HHsearch alignment for GI: 254780426 and conserved domain: cd04632
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=3.5e-14 Score=112.79 Aligned_cols=119 Identities=16% Similarity=0.285 Sum_probs=98.1
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCC------CCCCCCCCCHHHHC-C
Q ss_conf 1299986301036778979865981799841886642241029999987662235643------22333457678851-5
Q gi|254780426|r 97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTN------NINLNIQLSESNLI-K 169 (320)
Q Consensus 97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~------~~~~~~~~~l~~~~-r 169 (320)
T Consensus 1 kdvvTv~~~~~l~~a~~lm~~~~i~~lPVvd~~g-~lvGiiT~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~iM~~ 79 (128)
T cd04632 1 EDVITVREDDSVGKAINVLREHGISRLPVVDDNG-KLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS 79 (128)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-CEEEEEEHHHHHHHHHCCCHHCCHHHHCCHHHHHHCCCHHHHCCC
T ss_conf 9986989959299999999983997799996899-789999889999988532101011221001223406799996679
Q ss_pred CCEEECCCCCHHHHHHHHHCCCCCCEEEE--ECCCCCEEEEEHHHHHHH
Q ss_conf 65797178851232343201356511654--077662046675889999
Q gi|254780426|r 170 NILFVPSSMLVSDLLTNIQESRIRMALVI--DEHGGTDGLVSYEDIVSV 216 (320)
Q Consensus 170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVv--DE~G~~~GiVTleDIle~ 216 (320)
T Consensus 80 ~vitv~~~~~i~~a~~~M~~~~i~~lpVv~~dd~~~lvGIiT~~DilrA 128 (128)
T cd04632 80 PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA 128 (128)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 9879999293999999999779978966847899989999996996469