HHsearch alignment for GI: 254780426 and conserved domain: cd04641

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43  E-value=9.3e-13  Score=103.44  Aligned_cols=112  Identities=15%  Similarity=0.224  Sum_probs=92.2

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-------C
Q ss_conf             129998630103677897986598179984188664224102999998766223564322333457678851-------5
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-------K  169 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-------r  169 (320)
T Consensus         1 r~Vitv~pd~~l~da~~lm~~~~is~lPVVD~~g-~lvGiis~~Dl~~~~~~~~~~~~------~~~~~~~~~~~~~~~~   73 (120)
T cd04641           1 KNIATARPDTPLIDVLDMLVERRVSALPIVDENG-KVVDVYSRFDVINLAKEGAYNNL------DLTVGEALERRSQDFE   73 (120)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-CEEEEEEHHHHHHHHHCCCCCCC------CCCHHHHHHCCCCCCC
T ss_conf             9978989989999999999980986699987899-69899759999988751554434------4208776421555547


Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             6579717885123234320135651165407766204667588999
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
T Consensus        74 ~v~t~~~~~~l~~~~~~m~~~~i~rlpVVD~~~rlvGiIs~~Dilr  119 (120)
T cd04641          74 GVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf             8569899997999999999849857989989997999998688238