HHsearch alignment for GI: 254780426 and conserved domain: cd04802
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=9.6e-12 Score=96.82 Aligned_cols=108 Identities=19% Similarity=0.314 Sum_probs=93.9
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECC
Q ss_conf 29998630103677897986598179984188664224102999998766223564322333457678851-56579717
Q gi|254780426|r 98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPS 176 (320)
Q Consensus 98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe 176 (320)
T Consensus 2 ~vvti~~~~tl~~a~~~m~~~~i~~l~V~d~~--~~vGivt~~Di~~~~~~~~~------~~~~~~v~~iM~~~~~tv~~ 73 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNE--KPVGIITERDLVKKVVSRNL------KPREVPVGEVMSTPLITIDP 73 (112)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEEECC--EEEEEEEECHHHHHHHHCCC------CCCCCCHHHHHCCCCEEECC
T ss_conf 97896891989999999997499879999899--99999982187888875479------81238999972348559947
Q ss_pred CCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHH
Q ss_conf 88512323432013565116540776620466758899
Q gi|254780426|r 177 SMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIV 214 (320)
Q Consensus 177 ~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIl 214 (320)
T Consensus 74 ~~~l~~a~~~m~~~~~~~lpVvd~-~~lvGiIt~~Dil 110 (112)
T cd04802 74 NASLNEAAKLMAKHGIKRLPVVDD-DELVGIVTTTDIV 110 (112)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEEC-CEEEEEEECHHHC
T ss_conf 986999999878719858999989-9999999806710