Query         gi|254780426|ref|YP_003064839.1| hemolysin protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 320
No_of_seqs    222 out of 3225
Neff          7.2 
Searched_HMMs 39220
Date          Sun May 29 16:08:47 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780426.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR03520 GldE gliding motilit 100.0       0       0  511.4  25.2  300    2-314   101-407 (408)
  2 PRK11573 hypothetical protein; 100.0       0       0  503.5  24.8  303    3-319    94-408 (413)
  3 COG1253 TlyC Hemolysins and re 100.0       0       0  476.3  23.6  302    4-319   113-426 (429)
  4 COG4536 CorB Putative Mg2+ and 100.0       0       0  448.5  23.4  306    2-319   104-420 (423)
  5 COG4535 CorC Putative Mg2+ and 100.0       0       0  421.1  21.8  262   41-317    22-284 (293)
  6 cd04590 CBS_pair_CorC_HlyC_ass  99.9 4.3E-26 1.1E-30  190.8   8.5  111   97-216     1-111 (111)
  7 KOG2118 consensus               99.8 6.9E-19 1.8E-23  143.6   6.8  231   14-252   125-367 (498)
  8 pfam03471 CorC_HlyC Transporte  99.7 1.4E-16 3.7E-21  128.4  10.5   78  234-315     2-80  (80)
  9 cd04596 CBS_pair_DRTGG_assoc T  99.7 7.3E-17 1.9E-21  130.3   8.4  106   97-216     2-108 (108)
 10 cd04639 CBS_pair_26 The CBS do  99.7 5.5E-16 1.4E-20  124.6  10.3  109   97-215     1-110 (111)
 11 cd04631 CBS_pair_18 The CBS do  99.7 9.5E-16 2.4E-20  123.1  10.3  119   98-216     2-125 (125)
 12 cd04610 CBS_pair_ParBc_assoc T  99.6 4.8E-15 1.2E-19  118.5   7.5  105   97-216     2-107 (107)
 13 cd04600 CBS_pair_HPP_assoc Thi  99.6 2.1E-14 5.4E-19  114.2  10.2  119   97-216     2-124 (124)
 14 COG3448 CBS-domain-containing   99.6   8E-14   2E-18  110.5  12.8  154   51-220   220-374 (382)
 15 cd04611 CBS_pair_PAS_GGDEF_DUF  99.6 2.4E-14 6.2E-19  113.8   9.7  109   97-215     1-110 (111)
 16 cd04635 CBS_pair_22 The CBS do  99.6 3.9E-14 9.8E-19  112.5  10.1  117   98-215     2-121 (122)
 17 cd04632 CBS_pair_19 The CBS do  99.6 3.5E-14 8.9E-19  112.8   9.7  119   97-216     1-128 (128)
 18 cd04588 CBS_pair_CAP-ED_DUF294  99.5 3.1E-14 7.8E-19  113.2   9.2  108   98-216     2-110 (110)
 19 cd04612 CBS_pair_SpoIVFB_EriC_  99.5 2.3E-14 5.9E-19  114.0   8.5  109   98-216     2-111 (111)
 20 cd04585 CBS_pair_ACT_assoc2 Th  99.5 4.6E-14 1.2E-18  112.0   9.8  117   98-216     2-122 (122)
 21 cd04643 CBS_pair_30 The CBS do  99.5 7.2E-14 1.8E-18  110.7  10.0  115   97-216     1-116 (116)
 22 cd04803 CBS_pair_15 The CBS do  99.5 9.2E-14 2.3E-18  110.0  10.3  116   99-215     3-121 (122)
 23 cd04613 CBS_pair_SpoIVFB_EriC_  99.5 6.1E-14 1.5E-18  111.2   8.9  112   97-216     1-114 (114)
 24 cd04594 CBS_pair_EriC_assoc_ar  99.5 6.3E-14 1.6E-18  111.1   8.8  101   99-216     3-104 (104)
 25 COG4109 Predicted transcriptio  99.5 9.2E-14 2.3E-18  110.1   9.3  131   74-218   170-306 (432)
 26 cd04642 CBS_pair_29 The CBS do  99.5 9.7E-14 2.5E-18  109.9   9.3  118   97-215     1-125 (126)
 27 TIGR01302 IMP_dehydrog inosine  99.5 1.2E-13 3.1E-18  109.3   8.7  177   51-254    44-244 (476)
 28 cd04624 CBS_pair_11 The CBS do  99.5 6.5E-14 1.6E-18  111.0   7.2  110   98-216     2-112 (112)
 29 cd04622 CBS_pair_9 The CBS dom  99.5 1.9E-13 4.8E-18  108.0   9.2  110   98-216     2-113 (113)
 30 cd04637 CBS_pair_24 The CBS do  99.5 3.5E-13   9E-18  106.2  10.1  117   97-215     1-121 (122)
 31 cd04627 CBS_pair_14 The CBS do  99.5 3.2E-13 8.1E-18  106.5   9.7  115   99-213     3-120 (123)
 32 cd04586 CBS_pair_BON_assoc Thi  99.5 2.5E-13 6.4E-18  107.2   9.0  118   97-216     2-135 (135)
 33 cd04633 CBS_pair_20 The CBS do  99.5 2.7E-13 6.9E-18  107.0   9.0  115   98-215     2-120 (121)
 34 cd04601 CBS_pair_IMPDH This cd  99.5 1.7E-13 4.4E-18  108.3   8.0  106   97-215     2-109 (110)
 35 cd04621 CBS_pair_8 The CBS dom  99.5 3.1E-13 7.9E-18  106.6   9.3  118   97-216     1-135 (135)
 36 cd04604 CBS_pair_KpsF_GutQ_ass  99.5 4.2E-13 1.1E-17  105.7   9.3  112   97-216     2-114 (114)
 37 cd04609 CBS_pair_PALP_assoc2 T  99.5 3.4E-13 8.6E-18  106.3   8.6  107   98-215     2-109 (110)
 38 cd04584 CBS_pair_ACT_assoc Thi  99.4 7.6E-13 1.9E-17  104.0   9.6  116   98-215     2-120 (121)
 39 cd04623 CBS_pair_10 The CBS do  99.4 6.2E-13 1.6E-17  104.6   9.0  111   98-216     2-113 (113)
 40 cd04636 CBS_pair_23 The CBS do  99.4   1E-12 2.6E-17  103.2  10.0  117   97-215     1-131 (132)
 41 cd04619 CBS_pair_6 The CBS dom  99.4   1E-12 2.6E-17  103.2  10.0  111   98-215     2-113 (114)
 42 cd04634 CBS_pair_21 The CBS do  99.4 5.7E-13 1.4E-17  104.9   8.7  116   97-215     1-142 (143)
 43 cd04629 CBS_pair_16 The CBS do  99.4 8.8E-13 2.2E-17  103.6   9.4  112   98-216     2-114 (114)
 44 cd04630 CBS_pair_17 The CBS do  99.4 1.1E-12 2.8E-17  102.9   9.8  111   98-215     2-113 (114)
 45 cd04638 CBS_pair_25 The CBS do  99.4 5.4E-13 1.4E-17  105.0   8.1  105   97-216     1-106 (106)
 46 cd04605 CBS_pair_MET2_assoc Th  99.4 3.5E-13 8.9E-18  106.2   7.1  107   97-215     2-109 (110)
 47 cd04626 CBS_pair_13 The CBS do  99.4 1.2E-12 3.2E-17  102.6   9.7  109   97-215     1-110 (111)
 48 cd04641 CBS_pair_28 The CBS do  99.4 9.3E-13 2.4E-17  103.4   9.0  112   97-215     1-119 (120)
 49 cd04615 CBS_pair_2 The CBS dom  99.4 1.9E-12 4.9E-17  101.4  10.6  109   99-215     3-112 (113)
 50 cd04625 CBS_pair_12 The CBS do  99.4 1.6E-12   4E-17  102.0  10.0  111   97-216     1-112 (112)
 51 COG2524 Predicted transcriptio  99.4 1.3E-12 3.3E-17  102.5   7.9  130   78-220   163-293 (294)
 52 cd04593 CBS_pair_EriC_assoc_ba  99.4 2.2E-12 5.7E-17  100.9   8.7  110   99-216     3-115 (115)
 53 cd04595 CBS_pair_DHH_polyA_Pol  99.4 1.5E-12 3.8E-17  102.1   7.6  107   97-215     2-109 (110)
 54 cd04587 CBS_pair_CAP-ED_DUF294  99.4 1.3E-12 3.2E-17  102.6   7.2  112   97-216     1-113 (113)
 55 cd04583 CBS_pair_ABC_OpuCA_ass  99.4 1.1E-12 2.9E-17  102.9   6.8  107   97-216     2-109 (109)
 56 cd04599 CBS_pair_GGDEF_assoc2   99.4 1.9E-12 4.8E-17  101.5   7.8  103   98-216     2-105 (105)
 57 cd04801 CBS_pair_M50_like This  99.4 3.8E-12 9.8E-17   99.4   9.1  108   98-215     2-113 (114)
 58 cd04602 CBS_pair_IMPDH_2 This   99.4 2.6E-12 6.5E-17  100.6   7.7  107   97-215     2-113 (114)
 59 cd04582 CBS_pair_ABC_OpuCA_ass  99.4 5.5E-12 1.4E-16   98.4   9.4  104   97-215     1-105 (106)
 60 cd04620 CBS_pair_7 The CBS dom  99.4 6.7E-12 1.7E-16   97.8   9.8  110   98-215     2-114 (115)
 61 cd04589 CBS_pair_CAP-ED_DUF294  99.3 1.4E-11 3.5E-16   95.8  10.3  108   98-215     2-110 (111)
 62 cd04802 CBS_pair_3 The CBS dom  99.3 9.6E-12 2.4E-16   96.8   9.1  108   98-214     2-110 (112)
 63 cd04607 CBS_pair_NTP_transfera  99.3 1.1E-11 2.7E-16   96.5   9.0  107  100-215     5-112 (113)
 64 cd04800 CBS_pair_CAP-ED_DUF294  99.3 1.1E-11 2.8E-16   96.4   8.3  108   98-215     2-110 (111)
 65 cd04606 CBS_pair_Mg_transporte  99.3 1.3E-11 3.2E-16   96.0   7.9  102  102-217     2-109 (109)
 66 PRK01862 putative voltage-gate  99.3 4.8E-11 1.2E-15   92.3   9.8  124   84-217   453-579 (583)
 67 cd04617 CBS_pair_4 The CBS dom  99.3 4.2E-11 1.1E-15   92.6   9.0  108   99-214     3-116 (118)
 68 cd04603 CBS_pair_KefB_assoc Th  99.2 5.2E-11 1.3E-15   92.0   9.0  108   98-215     2-110 (111)
 69 cd04614 CBS_pair_1 The CBS dom  99.2 2.4E-11 6.2E-16   94.2   6.6   94   98-215     2-95  (96)
 70 PRK07107 inositol-5-monophosph  99.2 6.5E-11 1.7E-15   91.4   8.7  166   55-248    63-240 (497)
 71 cd04591 CBS_pair_EriC_assoc_eu  99.2 1.6E-10 4.1E-15   88.8   9.2  100   97-215     2-104 (105)
 72 COG2239 MgtE Mg/Co/Ni transpor  99.2 3.6E-10 9.1E-15   86.5  10.6  135   68-218   113-253 (451)
 73 cd04598 CBS_pair_GGDEF_assoc T  99.1 3.5E-10 8.8E-15   86.6   8.6  112   98-215     2-118 (119)
 74 PRK11543 gutQ D-arabinose 5-ph  99.1 1.2E-10 2.9E-15   89.7   5.8  121   87-216   197-318 (321)
 75 cd04640 CBS_pair_27 The CBS do  99.1 3.8E-10 9.7E-15   86.3   8.2  109   99-214     3-124 (126)
 76 cd02205 CBS_pair The CBS domai  99.1 4.7E-10 1.2E-14   85.7   8.4  110   98-215     2-112 (113)
 77 PRK07807 inositol-5-monophosph  99.1 4.8E-10 1.2E-14   85.7   7.3  160   55-247    56-223 (479)
 78 PTZ00314 inosine-5'-monophosph  99.0 2.4E-09   6E-14   81.1   8.9  163   56-247    62-234 (499)
 79 cd04608 CBS_pair_PALP_assoc Th  99.0 1.1E-09 2.9E-14   83.3   6.8  113   97-217     2-124 (124)
 80 PRK05567 inositol-5'-monophosp  99.0 9.4E-10 2.4E-14   83.8   6.2  125   72-216    77-203 (486)
 81 PRK10892 D-arabinose 5-phospha  99.0 1.6E-09   4E-14   82.3   7.3  122   86-216   201-323 (326)
 82 COG3620 Predicted transcriptio  98.9 5.5E-09 1.4E-13   78.8   8.2  141   66-219    39-185 (187)
 83 KOG1764 consensus               98.8 1.5E-08 3.8E-13   75.9   6.1  136   86-222   225-363 (381)
 84 COG0517 FOG: CBS domain [Gener  98.7 9.8E-08 2.5E-12   70.6   8.9  113   90-214     2-117 (117)
 85 COG2905 Predicted signal-trans  98.7 6.6E-08 1.7E-12   71.7   7.9  124   83-217   145-269 (610)
 86 PRK10070 glycine betaine trans  98.7 1.9E-07   5E-12   68.6   9.9  133   75-220   262-395 (400)
 87 pfam00478 IMPDH IMP dehydrogen  98.6 1.6E-07 4.1E-12   69.1   6.4  149   72-248    72-220 (467)
 88 KOG0474 consensus               98.5 1.6E-07 4.1E-12   69.1   5.4  135   83-219   578-749 (762)
 89 TIGR01302 IMP_dehydrog inosine  98.4 3.9E-07   1E-11   66.6   5.3  188   85-299   150-394 (476)
 90 cd04592 CBS_pair_EriC_assoc_eu  98.4 2.2E-06 5.6E-11   61.7   7.9  106   97-203     1-120 (133)
 91 cd04617 CBS_pair_4 The CBS dom  98.2 7.6E-07 1.9E-11   64.7   3.2   50  170-219     2-51  (118)
 92 cd04629 CBS_pair_16 The CBS do  98.2 6.5E-06 1.7E-10   58.6   7.6   85  169-255     1-86  (114)
 93 cd04625 CBS_pair_12 The CBS do  98.2 2.3E-06 5.9E-11   61.6   5.2   67   74-144    41-111 (112)
 94 TIGR00393 kpsF sugar isomerase  98.2 1.1E-06 2.8E-11   63.7   3.3  135   52-208   135-271 (272)
 95 TIGR01137 cysta_beta cystathio  98.2 9.5E-06 2.4E-10   57.5   8.1  130   83-217   362-526 (527)
 96 cd04636 CBS_pair_23 The CBS do  98.2 5.2E-06 1.3E-10   59.3   6.7  113  169-284     1-114 (132)
 97 cd04593 CBS_pair_EriC_assoc_ba  98.2 8.8E-06 2.2E-10   57.7   7.5   49  170-218     2-50  (115)
 98 cd04622 CBS_pair_9 The CBS dom  98.2 1.7E-06 4.4E-11   62.4   3.7   60   82-144    53-112 (113)
 99 cd04587 CBS_pair_CAP-ED_DUF294  98.2 3.3E-06 8.4E-11   60.5   5.0   58   83-143    54-111 (113)
100 cd04619 CBS_pair_6 The CBS dom  98.1 2.3E-06 5.8E-11   61.6   4.1   69   73-144    41-113 (114)
101 cd04640 CBS_pair_27 The CBS do  98.1 2.9E-06 7.3E-11   60.9   4.5   47  170-216     2-48  (126)
102 cd04630 CBS_pair_17 The CBS do  98.1 3.7E-06 9.4E-11   60.2   5.1   67   74-144    43-113 (114)
103 cd04633 CBS_pair_20 The CBS do  98.1 4.2E-06 1.1E-10   59.9   5.2   49  169-218     1-49  (121)
104 cd04624 CBS_pair_11 The CBS do  98.1   1E-05 2.6E-10   57.4   7.2   83  169-255     1-83  (112)
105 cd04589 CBS_pair_CAP-ED_DUF294  98.1 3.4E-06 8.6E-11   60.5   4.7   55   86-144    56-110 (111)
106 cd04613 CBS_pair_SpoIVFB_EriC_  98.1 1.5E-05 3.7E-10   56.3   7.6   83  169-255     1-84  (114)
107 cd04623 CBS_pair_10 The CBS do  98.1 1.5E-05 3.9E-10   56.1   7.8   51  169-219     1-51  (113)
108 cd04586 CBS_pair_BON_assoc Thi  98.1 3.7E-06 9.4E-11   60.2   4.2   51  169-219     2-52  (135)
109 cd04626 CBS_pair_13 The CBS do  98.1 3.1E-06   8E-11   60.7   3.8   56   84-143    54-109 (111)
110 TIGR01186 proV glycine betaine  98.1   3E-05 7.6E-10   54.3   8.7  120   88-220   243-364 (372)
111 cd04602 CBS_pair_IMPDH_2 This   98.1 4.7E-06 1.2E-10   59.5   4.5   61   83-144    53-113 (114)
112 cd04637 CBS_pair_24 The CBS do  98.1 5.1E-06 1.3E-10   59.3   4.6   48  170-218     2-49  (122)
113 cd04621 CBS_pair_8 The CBS dom  98.1 3.1E-06   8E-11   60.7   3.5   47  171-217     3-49  (135)
114 cd04600 CBS_pair_HPP_assoc Thi  98.1 2.3E-05 5.9E-10   55.0   7.9   52  169-220     2-53  (124)
115 cd04803 CBS_pair_15 The CBS do  98.0 2.7E-05   7E-10   54.5   8.0   53  169-221     1-53  (122)
116 cd04615 CBS_pair_2 The CBS dom  98.0 2.2E-05 5.6E-10   55.1   7.4   49  170-218     2-50  (113)
117 cd04641 CBS_pair_28 The CBS do  98.0 2.5E-05 6.3E-10   54.8   7.6   57  169-225     1-57  (120)
118 cd04594 CBS_pair_EriC_assoc_ar  98.0 8.6E-06 2.2E-10   57.8   4.8   56   85-144    48-103 (104)
119 cd04598 CBS_pair_GGDEF_assoc T  98.0 1.8E-05 4.5E-10   55.8   6.2   85  169-255     1-87  (119)
120 cd04643 CBS_pair_30 The CBS do  98.0 2.9E-05 7.5E-10   54.3   7.2   50  170-219     2-51  (116)
121 cd04627 CBS_pair_14 The CBS do  98.0 4.4E-05 1.1E-09   53.2   8.1   51  169-219     1-52  (123)
122 cd04584 CBS_pair_ACT_assoc Thi  98.0 3.3E-05 8.4E-10   54.0   7.2   49  169-217     1-49  (121)
123 KOG1764 consensus               97.9 0.00011 2.9E-09   50.4   9.6  185   70-255   133-328 (381)
124 cd04595 CBS_pair_DHH_polyA_Pol  97.9 1.5E-05 3.7E-10   56.3   5.0   49  169-218     2-50  (110)
125 cd04604 CBS_pair_KpsF_GutQ_ass  97.9 1.2E-05   3E-10   56.9   4.5   83  170-255     3-85  (114)
126 PRK07107 inositol-5-monophosph  97.9 1.2E-05 3.2E-10   56.8   4.5   63   86-149   160-222 (497)
127 KOG0475 consensus               97.9 4.2E-05 1.1E-09   53.3   7.2  130   86-216   542-693 (696)
128 cd04632 CBS_pair_19 The CBS do  97.9 8.1E-06 2.1E-10   58.0   3.6   50  170-219     2-51  (128)
129 cd04608 CBS_pair_PALP_assoc Th  97.9 2.3E-05 5.9E-10   55.0   5.9   86  168-256     1-86  (124)
130 cd04800 CBS_pair_CAP-ED_DUF294  97.9 3.6E-05 9.2E-10   53.7   6.9   83  169-255     1-83  (111)
131 pfam00571 CBS CBS domain. CBS   97.9 1.3E-05 3.3E-10   56.6   4.5   49  170-218     8-56  (57)
132 cd04638 CBS_pair_25 The CBS do  97.9 1.1E-05 2.9E-10   57.1   4.1   46  170-215     2-47  (106)
133 cd04597 CBS_pair_DRTGG_assoc2   97.9 1.7E-05 4.5E-10   55.8   5.0   58  158-215    54-112 (113)
134 cd04801 CBS_pair_M50_like This  97.9 1.4E-05 3.5E-10   56.5   4.2   84  169-255     1-85  (114)
135 cd04588 CBS_pair_CAP-ED_DUF294  97.9 5.3E-05 1.3E-09   52.7   7.2   81  169-255     1-81  (110)
136 cd04802 CBS_pair_3 The CBS dom  97.9 1.2E-05 2.9E-10   57.0   3.6   57   83-143    54-110 (112)
137 cd04618 CBS_pair_5 The CBS dom  97.9 7.5E-05 1.9E-09   51.7   7.7   94   98-214     2-96  (98)
138 smart00116 CBS Domain in cysta  97.9 2.4E-05 6.2E-10   54.9   4.9   47  171-217     2-48  (49)
139 cd04585 CBS_pair_ACT_assoc2 Th  97.9 1.7E-05 4.2E-10   56.0   4.1   50  169-219     1-50  (122)
140 cd04620 CBS_pair_7 The CBS dom  97.9 7.4E-05 1.9E-09   51.7   7.3   50  169-218     1-50  (115)
141 cd04635 CBS_pair_22 The CBS do  97.9 7.1E-05 1.8E-09   51.8   7.2   49  169-217     1-49  (122)
142 cd04612 CBS_pair_SpoIVFB_EriC_  97.8 2.2E-05 5.6E-10   55.1   4.4   81  170-255     2-82  (111)
143 cd04611 CBS_pair_PAS_GGDEF_DUF  97.8 2.6E-05 6.6E-10   54.7   4.7   47  171-218     3-49  (111)
144 cd04631 CBS_pair_18 The CBS do  97.8 9.7E-05 2.5E-09   50.9   7.7   52  169-220     1-53  (125)
145 cd04583 CBS_pair_ABC_OpuCA_ass  97.8   6E-05 1.5E-09   52.3   6.5   50  168-217     1-50  (109)
146 cd04610 CBS_pair_ParBc_assoc T  97.8 1.3E-05 3.4E-10   56.6   3.1   45  169-214     2-46  (107)
147 cd04634 CBS_pair_21 The CBS do  97.8 2.2E-05 5.5E-10   55.2   4.2   49  169-218     1-49  (143)
148 cd04605 CBS_pair_MET2_assoc Th  97.8 3.6E-05 9.3E-10   53.7   4.9   50  169-218     2-51  (110)
149 cd04592 CBS_pair_EriC_assoc_eu  97.8 0.00013 3.2E-09   50.1   7.7   48  171-218     3-50  (133)
150 cd04596 CBS_pair_DRTGG_assoc T  97.8 2.1E-05 5.4E-10   55.2   3.5   47  169-215     2-48  (108)
151 cd04639 CBS_pair_26 The CBS do  97.8 0.00014 3.7E-09   49.8   7.6   50  170-219     2-51  (111)
152 cd04607 CBS_pair_NTP_transfera  97.8 0.00011 2.9E-09   50.5   7.0   82  170-255     3-84  (113)
153 cd04601 CBS_pair_IMPDH This cd  97.7 3.9E-05 9.9E-10   53.5   4.3   47  168-214     1-47  (110)
154 cd04609 CBS_pair_PALP_assoc2 T  97.7 0.00015 3.8E-09   49.7   7.1   82  170-256     2-84  (110)
155 KOG2550 consensus               97.7 6.6E-05 1.7E-09   52.0   5.2  125   72-215    98-225 (503)
156 PRK05326 potassium/proton anti  97.7 0.00082 2.1E-08   44.8  10.7  100  201-314   462-561 (563)
157 cd04599 CBS_pair_GGDEF_assoc2   97.7 3.5E-05   9E-10   53.8   3.4   55   85-143    49-103 (105)
158 cd04597 CBS_pair_DRTGG_assoc2   97.7 3.3E-05 8.3E-10   54.0   3.1   76   64-143    28-111 (113)
159 PRK10892 D-arabinose 5-phospha  97.7 6.2E-05 1.6E-09   52.2   4.4   55  164-218   204-261 (326)
160 cd04606 CBS_pair_Mg_transporte  97.7 5.7E-05 1.4E-09   52.4   4.2   58   84-144    50-107 (109)
161 cd04603 CBS_pair_KefB_assoc Th  97.6 3.9E-05 9.9E-10   53.5   2.6   47  170-216     2-48  (111)
162 pfam00571 CBS CBS domain. CBS   97.6  0.0001 2.6E-09   50.7   4.5   55   89-146     1-55  (57)
163 cd04582 CBS_pair_ABC_OpuCA_ass  97.5 0.00013 3.4E-09   50.0   4.8   48  170-217     2-49  (106)
164 smart00116 CBS Domain in cysta  97.5 0.00012 3.1E-09   50.2   4.6   48   98-146     1-48  (49)
165 cd04642 CBS_pair_29 The CBS do  97.5 0.00052 1.3E-08   46.2   7.5   49  170-218     2-50  (126)
166 PRK01862 putative voltage-gate  97.5 0.00062 1.6E-08   45.6   7.7   93  161-256   455-548 (583)
167 cd02205 CBS_pair The CBS domai  97.4 0.00075 1.9E-08   45.1   7.2   83  170-255     2-84  (113)
168 PRK11543 gutQ D-arabinose 5-ph  97.4 0.00017 4.4E-09   49.3   3.7   56  164-219   199-257 (321)
169 COG2905 Predicted signal-trans  97.3  0.0005 1.3E-08   46.2   5.3   71   73-147   197-270 (610)
170 cd04614 CBS_pair_1 The CBS dom  97.3 0.00024 6.1E-09   48.3   3.3   46  169-214     1-46  (96)
171 TIGR00400 mgtE magnesium trans  97.1  0.0043 1.1E-07   40.1   8.3  142   68-224   116-263 (460)
172 PRK05567 inositol-5'-monophosp  97.1 0.00037 9.3E-09   47.1   2.6   61   85-147   145-205 (486)
173 PRK07807 inositol-5-monophosph  97.0  0.0011 2.8E-08   44.0   4.6   58   85-145   146-203 (479)
174 pfam01595 DUF21 Domain of unkn  96.9  0.0018 4.7E-08   42.5   5.0   71    4-74    104-182 (182)
175 COG3448 CBS-domain-containing   96.9   0.001 2.6E-08   44.2   3.5   82  126-217   219-301 (382)
176 PTZ00314 inosine-5'-monophosph  96.9 0.00077   2E-08   45.0   2.8   60   84-146   155-214 (499)
177 TIGR03415 ABC_choXWV_ATP choli  96.8  0.0015 3.7E-08   43.2   4.1   52  166-219   330-381 (382)
178 cd04590 CBS_pair_CorC_HlyC_ass  96.7  0.0043 1.1E-07   40.1   5.8   81  170-256     2-83  (111)
179 COG4175 ProV ABC-type proline/  96.7  0.0015 3.8E-08   43.1   3.3  124   74-220   261-385 (386)
180 cd04591 CBS_pair_EriC_assoc_eu  96.6  0.0021 5.5E-08   42.1   3.7   50   91-144    55-104 (105)
181 COG3263 NhaP-type Na+/H+ and K  96.5  0.0098 2.5E-07   37.8   6.5   74  237-314   494-567 (574)
182 COG4109 Predicted transcriptio  96.3  0.0036 9.2E-08   40.6   3.2  118  162-289   188-318 (432)
183 COG2524 Predicted transcriptio  96.2  0.0068 1.7E-07   38.8   4.2   92  160-257   170-262 (294)
184 COG0517 FOG: CBS domain [Gener  96.1  0.0097 2.5E-07   37.8   4.7   52  169-221     7-58  (117)
185 pfam00478 IMPDH IMP dehydrogen  96.1   0.008   2E-07   38.4   4.0   61   86-147   140-200 (467)
186 PRK10070 glycine betaine trans  95.7   0.057 1.4E-06   32.8   7.2  125  122-256   234-364 (400)
187 TIGR01303 IMP_DH_rel_1 IMP deh  95.6   0.022 5.6E-07   35.5   4.6  108   97-218    96-204 (476)
188 COG2239 MgtE Mg/Co/Ni transpor  94.2   0.058 1.5E-06   32.7   3.6   46  169-214   140-190 (451)
189 PRK11573 hypothetical protein;  94.2    0.23 5.8E-06   28.8   6.7  124  160-287   185-319 (413)
190 COG3620 Predicted transcriptio  94.0    0.19   5E-06   29.3   6.1   55  164-219    67-122 (187)
191 TIGR03520 GldE gliding motilit  94.0     0.3 7.7E-06   28.0   7.0   59  160-218   189-251 (408)
192 TIGR01137 cysta_beta cystathio  93.1    0.13 3.4E-06   30.4   4.0   90  168-257   373-488 (527)
193 KOG2550 consensus               91.7    0.15 3.9E-06   29.9   2.8   69   70-145   158-226 (503)
194 TIGR00393 kpsF sugar isomerase  91.4    0.13 3.3E-06   30.5   2.1   85  164-250   157-246 (272)
195 TIGR01186 proV glycine betaine  90.5     0.5 1.3E-05   26.6   4.5  146   98-260   183-337 (372)
196 cd04618 CBS_pair_5 The CBS dom  88.7     0.2 5.1E-06   29.2   1.4   46  173-218     5-51  (98)
197 KOG0476 consensus               85.8     1.3 3.4E-05   23.8   4.2   62   85-148   586-648 (931)
198 COG1125 OpuBA ABC-type proline  85.1    0.93 2.4E-05   24.8   3.1   41  176-216   268-308 (309)
199 cd04381 RhoGap_RalBP1 RhoGap_R  82.3     1.8 4.7E-05   22.9   3.7   47  238-284    40-87  (182)
200 cd04389 RhoGAP_KIAA1688 RhoGAP  82.3     2.1 5.3E-05   22.6   3.9   14  246-259   146-159 (187)
201 cd04402 RhoGAP_ARHGAP20 RhoGAP  80.6     2.1 5.4E-05   22.5   3.5   11  246-256   143-153 (192)
202 cd04406 RhoGAP_myosin_IXA RhoG  77.9     3.5 8.8E-05   21.1   3.9   48  237-284    34-83  (186)
203 cd04392 RhoGAP_ARHGAP19 RhoGAP  75.6     4.1  0.0001   20.6   3.7   39   70-113     5-43  (208)
204 PRK13225 phosphoglycolate phos  75.4     2.8 7.2E-05   21.7   2.9  102   38-145    83-184 (273)
205 cd04407 RhoGAP_myosin_IXB RhoG  73.6     4.6 0.00012   20.3   3.6   48  237-284    34-83  (186)
206 cd04408 RhoGAP_GMIP RhoGAP_GMI  72.5     4.9 0.00013   20.1   3.5   16  244-259   155-170 (200)
207 cd04385 RhoGAP_ARAP RhoGAP_ARA  72.4       5 0.00013   20.0   3.6   15  269-283    70-84  (184)
208 cd04393 RhoGAP_FAM13A1a RhoGAP  69.1     7.7  0.0002   18.8   3.9   11  246-256   150-160 (189)
209 cd04400 RhoGAP_fBEM3 RhoGAP_fB  68.8     7.4 0.00019   18.9   3.8   49  237-285    42-95  (190)
210 cd04403 RhoGAP_ARHGAP27_15_12_  67.1     7.9  0.0002   18.7   3.6   16  268-283    70-85  (187)
211 cd04396 RhoGAP_fSAC7_BAG7 RhoG  66.7     8.5 0.00022   18.5   3.7   49  237-285    51-104 (225)
212 TIGR03279 cyano_FeS_chp putati  66.7     9.8 0.00025   18.1   4.6   79  191-278   348-431 (433)
213 COG2216 KdpB High-affinity K+   66.7     4.5 0.00011   20.3   2.3   37  106-144   413-449 (681)
214 cd04374 RhoGAP_Graf RhoGAP_Gra  66.4     7.5 0.00019   18.9   3.4   19  267-285    85-103 (203)
215 cd04373 RhoGAP_p190 RhoGAP_p19  66.3     6.4 0.00016   19.3   3.0   16  268-283    68-83  (185)
216 cd04398 RhoGAP_fRGD1 RhoGAP_fR  66.1     7.8  0.0002   18.8   3.4   13  271-283    76-88  (192)
217 cd04378 RhoGAP_GMIP_PARG1 RhoG  65.9     8.1 0.00021   18.7   3.5   15  245-259   158-172 (203)
218 cd04387 RhoGAP_Bcr RhoGAP_Bcr:  65.8     8.1 0.00021   18.7   3.5   15  245-259   146-160 (196)
219 TIGR01497 kdpB K+-transporting  65.6     3.4 8.6E-05   21.2   1.5   38  105-144   411-448 (675)
220 cd04386 RhoGAP_nadrin RhoGAP_n  65.5     8.3 0.00021   18.6   3.5   15  245-259   150-164 (203)
221 cd04395 RhoGAP_ARHGAP21 RhoGAP  65.4     8.7 0.00022   18.4   3.6   11  246-256   150-160 (196)
222 KOG4269 consensus               64.6     7.1 0.00018   19.1   3.0   50  236-285   938-992 (1112)
223 TIGR02475 CobW cobalamin biosy  64.4     2.7 6.9E-05   21.8   0.8   27  178-207    19-45  (349)
224 cd04404 RhoGAP-p50rhoGAP RhoGA  64.2     9.6 0.00025   18.2   3.6   10  247-256   152-161 (195)
225 cd00159 RhoGAP RhoGAP: GTPase-  62.6      10 0.00026   18.0   3.5   11  246-256   129-139 (169)
226 pfam04459 DUF512 Protein of un  62.5      12  0.0003   17.6   4.2   69  191-261   127-199 (205)
227 cd04383 RhoGAP_srGAP RhoGAP_sr  61.0      11 0.00027   17.9   3.4   11  246-256   149-159 (188)
228 cd04376 RhoGAP_ARHGAP6 RhoGAP_  60.6      12  0.0003   17.6   3.5   15  245-259   147-161 (206)
229 PRK06769 hypothetical protein;  58.5     7.4 0.00019   18.9   2.2   77  180-260    33-111 (175)
230 PRK04149 sat sulfate adenylylt  57.1      14 0.00037   17.0   3.8   24  189-214    95-118 (390)
231 cd04384 RhoGAP_CdGAP RhoGAP_Cd  56.6      14 0.00037   17.0   3.4   16  268-283    72-87  (195)
232 TIGR01818 ntrC nitrogen regula  56.3     6.8 0.00017   19.2   1.7   62  210-276   198-266 (471)
233 smart00324 RhoGAP GTPase-activ  54.1      16 0.00041   16.7   3.8   11  246-256   133-143 (174)
234 COG2015 Alkyl sulfatase and re  53.1     4.8 0.00012   20.2   0.5  126  167-300   138-277 (655)
235 TIGR01969 minD_arch cell divis  48.6     6.2 0.00016   19.4   0.5   50  174-223   140-197 (258)
236 PRK11230 glycolate oxidase sub  47.8      15 0.00037   17.0   2.3   70   51-125    62-146 (499)
237 cd04372 RhoGAP_chimaerin RhoGA  47.4      21 0.00052   16.0   3.1   12  245-256   147-158 (194)
238 pfam00620 RhoGAP RhoGAP domain  47.1      21 0.00053   16.0   3.5   16  268-283    53-68  (152)
239 KOG4270 consensus               44.8      22 0.00057   15.8   4.0   51  237-287   186-237 (577)
240 pfam11305 DUF3107 Protein of u  44.4      23 0.00058   15.7   3.1   50   49-108    17-66  (74)
241 pfam01268 FTHFS Formate--tetra  43.5      12 0.00029   17.7   1.2   39   56-94    139-179 (555)
242 PRK05800 cobU adenosylcobinami  40.8      20 0.00052   16.0   2.2   64  179-248   104-167 (170)
243 TIGR01193 bacteriocin_ABC ABC-  40.1      26 0.00065   15.4   2.6   31   55-85    345-375 (710)
244 COG0277 GlcD FAD/FMN-containin  39.2      20  0.0005   16.2   1.9   72   50-126    37-122 (459)
245 COG0523 Putative GTPases (G3E   38.7      12 0.00031   17.5   0.7   18  129-146   116-133 (323)
246 pfam05198 IF3_N Translation in  38.1      28 0.00072   15.1   2.7   24  193-216    13-36  (76)
247 cd00477 FTHFS Formyltetrahydro  35.6      24 0.00061   15.6   1.8   38   56-94    123-163 (524)
248 cd07178 terB_like_YebE telluri  35.5      31 0.00079   14.8   3.6   28   57-84      3-30  (95)
249 COG4360 APA2 ATP adenylyltrans  35.4      27  0.0007   15.2   2.1   35  182-216    96-130 (298)
250 PRK08942 D,D-heptose 1,7-bisph  35.2      27 0.00068   15.3   2.0   37  178-214    32-68  (181)
251 PRK13506 formate--tetrahydrofo  35.1      17 0.00044   16.5   1.0   19   76-94    175-193 (577)
252 pfam02283 CobU Cobinamide kina  34.4      32 0.00083   14.7   2.7   64  179-248   101-164 (166)
253 TIGR02194 GlrX_NrdH Glutaredox  32.7      29 0.00074   15.0   1.9   37   99-136    26-63  (72)
254 pfam04278 Tic22 Tic22-like fam  31.0      37 0.00094   14.4   3.5   91   97-218   137-232 (259)
255 PRK00028 infC translation init  29.5      39 0.00099   14.2   2.6   33  106-138    33-65  (175)
256 cd04409 RhoGAP_PARG1 RhoGAP_PA  29.4      39   0.001   14.2   3.4   15  245-259   166-180 (211)
257 pfam04391 DUF533 Protein of un  29.3      39   0.001   14.2   3.7   30   55-84     80-109 (187)
258 cd00544 CobU Adenosylcobinamid  28.3      41   0.001   14.1   2.5   64  179-248   104-167 (169)
259 TIGR02472 sucr_P_syn_N sucrose  26.2      12 0.00031   17.5  -1.0   59   50-128   164-222 (445)
260 pfam01565 FAD_binding_4 FAD bi  25.6      44  0.0011   13.8   1.8   69  237-307    62-135 (138)
261 pfam02743 Cache_1 Cache domain  25.6      40   0.001   14.1   1.6   25  180-204    41-65  (81)
262 PRK08053 sulfur carrier protei  24.8      47  0.0012   13.6   2.3   31  170-200     8-38  (66)
263 pfam09269 DUF1967 Domain of un  24.5      48  0.0012   13.6   5.1   56  232-298     2-67  (68)
264 cd00517 ATPS ATP-sulfurylase (  24.5      48  0.0012   13.6   2.3   10  110-119   146-155 (356)
265 PRK11537 putative GTP-binding   24.4      31 0.00079   14.8   0.8   12  131-142   124-135 (317)
266 cd07311 terB_like_1 tellurium   24.4      48  0.0012   13.6   3.3   68   42-113     8-79  (150)
267 TIGR02886 spore_II_AA anti-sig  24.0      49  0.0012   13.6   2.0   39   67-105    15-55  (106)
268 PRK10329 glutaredoxin-like pro  22.3      53  0.0013   13.3   1.7   37   99-136    28-64  (81)
269 PRK06193 hypothetical protein;  21.8      54  0.0014   13.3   1.7   55  198-253   156-210 (211)
270 COG2979 Uncharacterized protei  21.5      54  0.0014   13.2   3.6   30   56-85    113-142 (225)
271 cd03112 CobW_like The function  21.3      40   0.001   14.1   0.9   25  178-204    15-39  (158)
272 cd02930 DCR_FMN 2,4-dienoyl-Co  21.3      55  0.0014   13.2   2.7   17   54-70     76-92  (353)
273 TIGR00421 ubiX_pad polyprenyl   21.1      56  0.0014   13.2   1.6   62  169-233   113-179 (181)
274 PRK10975 TDP-fucosamine acetyl  20.9      44  0.0011   13.9   1.0   45  169-213   110-158 (231)
275 KOG2916 consensus               20.8      31  0.0008   14.8   0.3  102  101-209   157-265 (304)
276 TIGR03595 Obg_CgtA_exten Obg f  20.8      56  0.0014   13.1   5.4   56  232-298     3-68  (69)
277 PRK05446 imidazole glycerol-ph  20.5      57  0.0015   13.1   1.7   35  108-143    35-69  (354)
278 pfam02492 cobW CobW/HypB/UreG,  20.4      43  0.0011   13.9   0.9   15   69-83      8-22  (174)

No 1  
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=100.00  E-value=0  Score=511.35  Aligned_cols=300  Identities=22%  Similarity=0.390  Sum_probs=271.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHH---HHHHHHHHHHHH--HHHHHHHHCCCCCC-CCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             766799887655555544432035---687530268998--99998763378888-899999999997997689898999
Q gi|254780426|r    2 MSDFKINSSEHPKEKNEGIDLSPS---ISKTSVPAFWTR--TIRALCKTWKLMKL-SHHKGIRLPRIDASLEGIFSETEK   75 (320)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~p~---l~~i~~P~vw~~--~~~~~~~~~~~~~~-~~~eel~~l~~~~~~~G~i~~~E~   75 (320)
                      .+|..|++.+.....+-+....|.   +.++++|++|.+  .++.+++.++.... .++||++.+++.++++|.++ +|+
T Consensus       101 fGEiiPK~iA~~~~e~ia~~~a~~l~~~~~l~~Pl~~~l~~~~~~l~~~~g~~~~~~s~eel~~~i~~~~~~g~~~-eE~  179 (408)
T TIGR03520       101 FGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQKSNISVDQLSQALELTDEEDTTK-EEQ  179 (408)
T ss_pred             HHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCH-HHH
T ss_conf             4110106788769899999999999999999999999999999988651156789899999999998540348778-999


Q ss_pred             HHHHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCC
Q ss_conf             99998730477576413120012999863010367789798659817998418866422410299999876622356432
Q gi|254780426|r   76 EIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNN  155 (320)
Q Consensus        76 ~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~  155 (320)
                      +|++|+|+|++++|+|+||||+++++++.+++++++++.+.+++|||||||+++.|||+|++|+||++.+...       
T Consensus       180 ~~i~~vl~l~~~~v~eiMtPr~~v~~l~~~~~~~e~~~~~~~~~~SR~PV~~~~~D~iiGiv~~kDll~~~~~-------  252 (408)
T TIGR03520       180 KILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK-------  252 (408)
T ss_pred             HHHHHHHCCCCCEEHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEEHHHHHHHHHC-------
T ss_conf             9999982759989034235457958840644389999999857987222665898761799779899878736-------


Q ss_pred             CCCCCCCCHHHHCCCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCC
Q ss_conf             23334576788515657971788512323432013565116540776620466758899998742221000000001246
Q gi|254780426|r  156 INLNIQLSESNLIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAV  235 (320)
Q Consensus       156 ~~~~~~~~l~~~~r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~  235 (320)
                          .+..+.+++|||+|||+++++.++|++||+++.|||+|+||||++.|+||+|||+|+|||||.||+|.++..+.++
T Consensus       253 ----~~~~~~~~~r~~~~Vpe~~~~~~lL~~~~~~~~~~AiVvDEyG~~~GiVTlEDilEeivGei~DE~d~~~~~~~~~  328 (408)
T TIGR03520       253 ----KNFDWQSLLREPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKI  328 (408)
T ss_pred             ----CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEEC
T ss_conf             ----9998899863214899977889999999863874899998999878998889989999588868677665550873


Q ss_pred             CCCEEEEECCCCHHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHCCCCCCCCEEEEECCEEEEEEEECCCEEEEEEEEE
Q ss_conf             7733783045359999998288888777-746743179999998423473798899758959999995188789999996
Q gi|254780426|r  236 SDNTFIVDARTDLEELAKIIGTDCNCLK-GEQDVDSLGGLIFSVLDRIPARGEVVLEIPGFEIVILDADVRCVRRVRIRR  314 (320)
Q Consensus       236 ~~g~~~v~G~~~l~~l~~~l~~~l~~~~-~~~~~~Ti~G~i~~~l~~iP~~Ge~v~~~~g~~f~V~~~~~~rI~~v~v~~  314 (320)
                      ++|+|+++|+++++|+++.++++++..+ .+++|+|+|||+++++|++|++||++ .|+||+|+|++++++||.+|+|+.
T Consensus       329 ~~~~~~v~G~~~l~dl~~~l~~~~~~~~~~~~~~~Tl~G~il~~l~~iP~~ge~v-~~~~~~f~V~~~~~~rI~~V~vt~  407 (408)
T TIGR03520       329 DDNNYVFEGKTSLKDFYKILKLEEDMFDEVKGEAETLAGFLLEISGGFPKKGEKI-TFENFEFTIEAMDKKRIKQVKVTI  407 (408)
T ss_pred             CCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEE-EECCEEEEEEEEECCEEEEEEEEE
T ss_conf             7986999802699999998589988765657897708999999858689999999-999999999984078677999997


No 2  
>PRK11573 hypothetical protein; Provisional
Probab=100.00  E-value=0  Score=503.47  Aligned_cols=303  Identities=20%  Similarity=0.348  Sum_probs=265.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHHHHH--HHHHHHHHCCCCCC------CCHHHHHHHHHHHHHCCCCC
Q ss_conf             6679988765555554443203---5687530268998--99998763378888------89999999999799768989
Q gi|254780426|r    3 SDFKINSSEHPKEKNEGIDLSP---SISKTSVPAFWTR--TIRALCKTWKLMKL------SHHKGIRLPRIDASLEGIFS   71 (320)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~p---~l~~i~~P~vw~~--~~~~~~~~~~~~~~------~~~eel~~l~~~~~~~G~i~   71 (320)
                      +|..|++.+..++.+-+....+   .+.++++|++|..  .++.+++++|..+.      .++||++.++.++  +|.++
T Consensus        94 gEiiPK~la~~~~~~~a~~~a~~l~~~~~~~~Plv~~~~~~s~~l~rl~g~~~~~~~~~~~t~eEl~~lv~~~--~~~l~  171 (413)
T PRK11573         94 AEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGSLSKEELRTIVHES--RSQIS  171 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHC--CCCCC
T ss_conf             9784899999789999999999999999999889999999999777532667775445536899999766410--26678


Q ss_pred             HHHHHHHHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCC
Q ss_conf             89999999873047757641312001299986301036778979865981799841886642241029999987662235
Q gi|254780426|r   72 ETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYA  151 (320)
Q Consensus        72 ~~E~~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~  151 (320)
                      ++|++|++|+|+|++++|+||||||+++++++.+++++++++.+.+++|||||||+++.||++|++|+||++..+.....
T Consensus       172 ~~e~~mi~~il~l~~~~v~eiMtPR~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~iiGiv~~kdl~~~~~~~~~  251 (413)
T PRK11573        172 RRNQDMLLSVLDLEKVTVDDIMVPRNEIIGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAWRLMTEKKE  251 (413)
T ss_pred             HHHHHHHHHHHCCCCCEEHEEEEECCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEHHHHHHHHCCCC
T ss_conf             79999999872518989011862002268974789999999986633875425854788865999982577877642666


Q ss_pred             CCCCCCCCCCCCHHHHCCCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCH-HH
Q ss_conf             64322333457678851565797178851232343201356511654077662046675889999874222100000-00
Q gi|254780426|r  152 KTNNINLNIQLSESNLIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSK-KS  230 (320)
Q Consensus       152 ~~~~~~~~~~~~l~~~~r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~-~~  230 (320)
                             .....+...+++++|||+++++.++|..||+++.|||+|+||||++.|+||+|||+|+|||||.||+|.+ ..
T Consensus       252 -------~~~~~l~~~~~~~~fVpe~~~~~~lL~~~~~~~~h~AiVvDEyGg~~GiVTlEDilEeivGei~de~d~~~~~  324 (413)
T PRK11573        252 -------FTKETMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAE  324 (413)
T ss_pred             -------CCHHHHHHHCCCCEEECCCCHHHHHHHHHHHHCCEEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             -------8878887514787796898909999999884286379999489988899549999999838775556764330


Q ss_pred             CCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCEEEEEEEECCCEEEEE
Q ss_conf             01246773378304535999999828888877774674317999999842347379889975895999999518878999
Q gi|254780426|r  231 MISAVSDNTFIVDARTDLEELAKIIGTDCNCLKGEQDVDSLGGLIFSVLDRIPARGEVVLEIPGFEIVILDADVRCVRRV  310 (320)
Q Consensus       231 ~i~~~~~g~~~v~G~~~l~~l~~~l~~~l~~~~~~~~~~Ti~G~i~~~l~~iP~~Ge~v~~~~g~~f~V~~~~~~rI~~v  310 (320)
                      .+.+.++|+|+++|.++++|+++.||+++|    +++|+|+|||+++++|++|++|+++ .++||+|+|++++++||.+|
T Consensus       325 ~~~~~~dg~~~v~G~~~l~dl~~~l~~~lp----~~~~~Tl~G~il~~lg~iP~~Ge~v-~~~~~~f~V~~~~~~rI~~v  399 (413)
T PRK11573        325 EVTPQNDGSVIIDGTANVREINKAFNWHLP----EDDARTVNGVILEALEEIPVAGTRV-RIGEYDIDILDVQDNMIKQV  399 (413)
T ss_pred             CEEECCCCEEEEECCCCHHHHHHHHCCCCC----CCCCCCHHHHHHHHHCCCCCCCCEE-EECCEEEEEEEEECCEEEEE
T ss_conf             218878973999767799999998598999----9998628999999858689899999-99999999998307847699


Q ss_pred             EEEECCCCC
Q ss_conf             999634347
Q gi|254780426|r  311 RIRRLVHFK  319 (320)
Q Consensus       311 ~v~~l~~~~  319 (320)
                      +|+|+...+
T Consensus       400 ~i~~~~p~~  408 (413)
T PRK11573        400 KVTPVKPLR  408 (413)
T ss_pred             EEEECCCCC
T ss_conf             999789997


No 3  
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=100.00  E-value=0  Score=476.27  Aligned_cols=302  Identities=32%  Similarity=0.538  Sum_probs=261.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHHHH--HHHHHHHHHCCCCCC------CCHHHHHHHHHHHHHCCCCCH
Q ss_conf             679988765555554443203---568753026899--899998763378888------899999999997997689898
Q gi|254780426|r    4 DFKINSSEHPKEKNEGIDLSP---SISKTSVPAFWT--RTIRALCKTWKLMKL------SHHKGIRLPRIDASLEGIFSE   72 (320)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~p---~l~~i~~P~vw~--~~~~~~~~~~~~~~~------~~~eel~~l~~~~~~~G~i~~   72 (320)
                      +..|++.+.......+....|   .+.++++|++|.  +++++++++++....      .+.++++ ++.+|.++|.+++
T Consensus       113 El~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~  191 (429)
T COG1253         113 ELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILRLFGVEPVEEEALTSTEEELE-LVSESAEEGVLEE  191 (429)
T ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH-HHHCCCCCCCCCH
T ss_conf             151799998677999998889999999998589999999999999861888666432331167888-8640012686288


Q ss_pred             HHHHHHHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCC
Q ss_conf             99999998730477576413120012999863010367789798659817998418866422410299999876622356
Q gi|254780426|r   73 TEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAK  152 (320)
Q Consensus        73 ~E~~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~  152 (320)
                      +|+.|++|+|+|++++|+++||||+++++++.+.+.+++.+.+.+++|||+|||+++.||++|++|+||++.+...... 
T Consensus       192 ~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-  270 (429)
T COG1253         192 EEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-  270 (429)
T ss_pred             HHHHHHHHHHCCCCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEHHHHHHHHHCCCC-
T ss_conf             9999999650213756261760315579941899999999999758986587885799837888689999976431564-


Q ss_pred             CCCCCCCCCCCHHHHCCCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCC-HHHC
Q ss_conf             432233345767885156579717885123234320135651165407766204667588999987422210000-0000
Q gi|254780426|r  153 TNNINLNIQLSESNLIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHS-KKSM  231 (320)
Q Consensus       153 ~~~~~~~~~~~l~~~~r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~-~~~~  231 (320)
                              .......++||+||||++++.++|++||+++.|||+|+||||++.|+||+|||+|+|+|||.||+|. +++.
T Consensus       271 --------~~~~~~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~  342 (429)
T COG1253         271 --------DLDLRVLVRPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEED  342 (429)
T ss_pred             --------CCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCEEEEEEECCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             --------444200257871778989799999998863874999993789843326589999998487754345545642


Q ss_pred             CCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCEEEEEEEECCCEEEEEE
Q ss_conf             12467733783045359999998288888777746743179999998423473798899758959999995188789999
Q gi|254780426|r  232 ISAVSDNTFIVDARTDLEELAKIIGTDCNCLKGEQDVDSLGGLIFSVLDRIPARGEVVLEIPGFEIVILDADVRCVRRVR  311 (320)
Q Consensus       232 i~~~~~g~~~v~G~~~l~~l~~~l~~~l~~~~~~~~~~Ti~G~i~~~l~~iP~~Ge~v~~~~g~~f~V~~~~~~rI~~v~  311 (320)
                      +.++.+++|+++|.++++++++.+|+++   +.+++|+|+|||+++++|++|++|+.+ .+++|+|+|++++++||++|+
T Consensus       343 ~~~~~~~~~~v~G~~~l~e~~~~l~~~~---~~~~~~~Ti~G~v~~~lg~iP~~g~~~-~~~~~~~~V~~~~~~rI~~v~  418 (429)
T COG1253         343 IIQRDDDGWLVDGRVPLEELEELLGIDL---DEEEDYDTIAGLVLSLLGRIPKVGESV-VIGGLRFEVLDMDGRRIDKVL  418 (429)
T ss_pred             CEEECCCCEEEECCCCHHHHHHHHCCCC---CCCCCCCCHHHHHHHHCCCCCCCCCEE-EECCCEEEEEECCCCEEEEEE
T ss_conf             2686389679957315999998729887---546786449999999819989888879-974860899984476589999


Q ss_pred             EEECCCCC
Q ss_conf             99634347
Q gi|254780426|r  312 IRRLVHFK  319 (320)
Q Consensus       312 v~~l~~~~  319 (320)
                      |+|.....
T Consensus       419 i~~~~~~~  426 (429)
T COG1253         419 IVRLKDKP  426 (429)
T ss_pred             EEECCCCC
T ss_conf             99768888


No 4  
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=100.00  E-value=0  Score=448.53  Aligned_cols=306  Identities=23%  Similarity=0.397  Sum_probs=279.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHHHHHH--HHHHHHHCCCCCC------CCHHHHHHHHHHHHHCCCC
Q ss_conf             76679988765555554443203---56875302689989--9998763378888------8999999999979976898
Q gi|254780426|r    2 MSDFKINSSEHPKEKNEGIDLSP---SISKTSVPAFWTRT--IRALCKTWKLMKL------SHHKGIRLPRIDASLEGIF   70 (320)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~p---~l~~i~~P~vw~~~--~~~~~~~~~~~~~------~~~eel~~l~~~~~~~G~i   70 (320)
                      -++.-|++.++++...-+-..++   .+.+++.|++|+.+  ++.+++++|.+..      .+.||++.++++++.+|..
T Consensus       104 FaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~~~~~~~~~s~EElR~~v~~~~~e~~~  183 (423)
T COG4536         104 FAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLDQAVSQLSSKEELRTAVNESGSEGSV  183 (423)
T ss_pred             HHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             99762017765283654413457899999999999999999999999995768554664336789998999886133562


Q ss_pred             CHHHHHHHHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCC
Q ss_conf             98999999987304775764131200129998630103677897986598179984188664224102999998766223
Q gi|254780426|r   71 SETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMY  150 (320)
Q Consensus        71 ~~~E~~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~  150 (320)
                      .+.+++|+-++|+|.+.+|.|||+||++|.++|.+++.+++.+.+..+.|+|+|||+++.|||+|++|+||+++++.+..
T Consensus       184 ~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~  263 (423)
T COG4536         184 NKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKN  263 (423)
T ss_pred             CCCHHHHHHCCCCCCCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             31037877431153135544002132221553489989999999962887740014487467533431999999963458


Q ss_pred             CCCCCCCCCCCCCHHHHCCCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHH
Q ss_conf             56432233345767885156579717885123234320135651165407766204667588999987422210000000
Q gi|254780426|r  151 AKTNNINLNIQLSESNLIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKS  230 (320)
Q Consensus       151 ~~~~~~~~~~~~~l~~~~r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~  230 (320)
                      .       .....+...+++|+|||+++++.+.|..||+++.|+|+||||||.+.|+||+|||+|||||++.||+|...+
T Consensus       264 ~-------~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde~d~~~~  336 (423)
T COG4536         264 E-------FTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEHDTLAK  336 (423)
T ss_pred             C-------CCHHHHHHHHCCCEECCCCCCHHHHHHHHHHHCCEEEEEEECCCCEEEEEEHHHHHHHHHCCCCCCCCCCCC
T ss_conf             6-------407579987448745689992899999999725127999824676776646999999985433233664331


Q ss_pred             CCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCEEEEEEEECCCEEEEE
Q ss_conf             01246773378304535999999828888877774674317999999842347379889975895999999518878999
Q gi|254780426|r  231 MISAVSDNTFIVDARTDLEELAKIIGTDCNCLKGEQDVDSLGGLIFSVLDRIPARGEVVLEIPGFEIVILDADVRCVRRV  310 (320)
Q Consensus       231 ~i~~~~~g~~~v~G~~~l~~l~~~l~~~l~~~~~~~~~~Ti~G~i~~~l~~iP~~Ge~v~~~~g~~f~V~~~~~~rI~~v  310 (320)
                      .+.+.+||++++||+++++|+|+.|+|++|+    ++..|++|+++++++.||+.|..+ .+.||+|+|++++.|||++|
T Consensus       337 ev~~q~dgs~iidGs~~iRdlNr~l~W~Lp~----e~a~TinGLvle~le~IP~~~~~~-~i~~~~~~Il~~~~N~I~~v  411 (423)
T COG4536         337 EVIPQSDGSFIIDGSANVRDLNRALDWNLPD----EDARTINGLVLEELEEIPEEGQAV-RIGGYRIDILKVQENRIKQV  411 (423)
T ss_pred             CCCCCCCCCEEEECCCCHHHHHHHCCCCCCC----CCCHHHHHHHHHHHHHCCCCCEEE-EECCEEEEEEEHHCCCEEEE
T ss_conf             0023568748982887589988861988999----864347789999998589987189-99377999987210613168


Q ss_pred             EEEECCCCC
Q ss_conf             999634347
Q gi|254780426|r  311 RIRRLVHFK  319 (320)
Q Consensus       311 ~v~~l~~~~  319 (320)
                      +|.++...+
T Consensus       412 ri~~~~~~~  420 (423)
T COG4536         412 KITPLKALE  420 (423)
T ss_pred             EEEECCCCC
T ss_conf             877346557


No 5  
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=100.00  E-value=0  Score=421.09  Aligned_cols=262  Identities=25%  Similarity=0.455  Sum_probs=244.2

Q ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCC
Q ss_conf             98763378888899999999997997689898999999987304775764131200129998630103677897986598
Q gi|254780426|r   41 ALCKTWKLMKLSHHKGIRLPRIDASLEGIFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGR  120 (320)
Q Consensus        41 ~~~~~~~~~~~~~~eel~~l~~~~~~~G~i~~~E~~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~  120 (320)
                      ++.++|...+ .+++|+-.++..++..+.|+++...|+.+++++++++|+|||+||++++++..+.++++.+..+.++.|
T Consensus        22 L~~~~f~gEp-knr~eLl~liRdse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaH  100 (293)
T COG4535          22 LLSQLFHGEP-KNREELLELIRDSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAH  100 (293)
T ss_pred             HHHHHHCCCC-CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHEECCCCCCHHHHHHHHHHHCC
T ss_conf             9999836898-678999999987645346275689999888999875476611227782221013799999999998511


Q ss_pred             CEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCEEECCCCCHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             17998418866422410299999876622356432233345767885156579717885123234320135651165407
Q gi|254780426|r  121 SWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVPSSMLVSDLLTNIQESRIRMALVIDE  200 (320)
Q Consensus       121 sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE  200 (320)
                      |||||+.+++|+|.|++++||||+++...         ...+.+++++||+.+|||++.+..+|+.||.+|.|||+||||
T Consensus       101 SRfPVi~edkD~v~GIL~AKDLL~~~~~~---------~~~F~i~~lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDE  171 (293)
T COG4535         101 SRFPVISEDKDHVEGILLAKDLLPFMRSD---------AEPFDIKELLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE  171 (293)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCC---------CCCCCHHHHCCCCEECCCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             55871147700134454588788774078---------654638886155243466126999999998504726999822


Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHCCCH-HHCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             7662046675889999874222100000-000124677337830453599999982888887777467431799999984
Q gi|254780426|r  201 HGGTDGLVSYEDIVSVLMRDITSEHHSK-KSMISAVSDNTFIVDARTDLEELAKIIGTDCNCLKGEQDVDSLGGLIFSVL  279 (320)
Q Consensus       201 ~G~~~GiVTleDIle~ivGei~de~d~~-~~~i~~~~~g~~~v~G~~~l~~l~~~l~~~l~~~~~~~~~~Ti~G~i~~~l  279 (320)
                      ||++.|+||.|||||.|||+|.||||.+ ...|.++++++|.|.|.++|++||+.||.+++    +++|+|+||+++..+
T Consensus       172 fGgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~ls~~~~~vrALT~IedFN~~F~t~Fs----DeevDTIGGLVm~af  247 (293)
T COG4535         172 FGGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQLSRHTWRVRALTEIEDFNEAFGTHFS----DEEVDTIGGLVMQAF  247 (293)
T ss_pred             CCCEEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCC----HHHHHHHHHHHHHHH
T ss_conf             5772016779999999854331013505544467634772699844608998998668887----222121667999983


Q ss_pred             CCCCCCCCEEEEECCEEEEEEEECCCEEEEEEEEECCC
Q ss_conf             23473798899758959999995188789999996343
Q gi|254780426|r  280 DRIPARGEVVLEIPGFEIVILDADVRCVRRVRIRRLVH  317 (320)
Q Consensus       280 ~~iP~~Ge~v~~~~g~~f~V~~~~~~rI~~v~v~~l~~  317 (320)
                      ||+|+.||++ .++||.|+|..+|.|||-+++|+.+..
T Consensus       248 GhLP~RGE~i-~i~~~~FkV~~ADsRrv~~l~vt~~~~  284 (293)
T COG4535         248 GHLPARGEKI-DIGGYQFKVARADSRRVIQLHVTVPDD  284 (293)
T ss_pred             CCCCCCCCEE-EECCEEEEEEECCCCEEEEEEEECCCC
T ss_conf             6687778778-874637898604652279999765887


No 6  
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function.  The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.93  E-value=4.3e-26  Score=190.83  Aligned_cols=111  Identities=37%  Similarity=0.601  Sum_probs=102.5

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCEEECC
Q ss_conf             12999863010367789798659817998418866422410299999876622356432233345767885156579717
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVPS  176 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r~~~~Vpe  176 (320)
                      +++++++.++|++++++.+.+++|||||||+++.|+++|+++.||++.+.....         ....+..+++|++++|+
T Consensus         1 ~~v~~i~~~~s~~e~~~~~~~~~~sr~PV~~~~~~~ivGil~~kDll~~~~~~~---------~~~~~~~~~~~~~~v~~   71 (111)
T cd04590           1 TDIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE---------EDLDLRDLLRPPLFVPE   71 (111)
T ss_pred             CCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEHHHHHHHHCCC---------CCCCHHHHCCCCEECCH
T ss_conf             968999699999999999997799779999547887789999114456665278---------76407764044222255


Q ss_pred             CCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             8851232343201356511654077662046675889999
Q gi|254780426|r  177 SMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       177 ~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      ++++.++|..||+++.|+|+|+||||+++||||++||||+
T Consensus        72 ~~~l~~~l~~~~~~~~~~a~VvDe~G~~~GivT~~DilE~  111 (111)
T cd04590          72 STPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILEE  111 (111)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHCC
T ss_conf             6658899984355496799999699999999980485377


No 7  
>KOG2118 consensus
Probab=99.77  E-value=6.9e-19  Score=143.62  Aligned_cols=231  Identities=18%  Similarity=0.227  Sum_probs=162.0

Q ss_pred             CCCCCCCCCCH---HHHHHHHHHHHHHHHH--HHHHHCC-CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCE
Q ss_conf             55554443203---5687530268998999--9876337-8888899999999997997689898999999987304775
Q gi|254780426|r   14 KEKNEGIDLSP---SISKTSVPAFWTRTIR--ALCKTWK-LMKLSHHKGIRLPRIDASLEGIFSETEKEIFNNILRFRKI   87 (320)
Q Consensus        14 ~~~~~~~~~~p---~l~~i~~P~vw~~~~~--~~~~~~~-~~~~~~~eel~~l~~~~~~~G~i~~~E~~ii~~vl~l~~~   87 (320)
                      +.-..++...|   .+.-+++|+-|..+..  .+....+ +......+.+-.+.......|.+..+|..|+.++++|.++
T Consensus       125 ~gl~vga~~~~~~~i~~~l~~PI~~p~~~~d~~lg~~~~~~~~~~~l~~lv~~~~~e~~~g~~~~~e~~ii~g~l~l~ek  204 (498)
T KOG2118         125 YGLAVGANLVPLVRILSFLCLPIAYPFSKLDTALGLNLGEFLKRASLLALVQLVGNEAGKGDLTYDELTIITGALELTEK  204 (498)
T ss_pred             HCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             32301543100999999997168867424456540244211112779999998750013575524577887536899999


Q ss_pred             EEHHEEECCCEEEEEEECCCHH-HHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf             7641312001299986301036-778979865981799841886642241029999987662235643223334576788
Q gi|254780426|r   88 RIDDIMISRVSINAVEDKATVY-EAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESN  166 (320)
Q Consensus        88 ~v~diMtPr~~i~~i~~~~~~~-e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~  166 (320)
                      .+++||||-.++..++.+..+. +....+.++||||+|||+.+..+++|.+..+.++.+..... .     ......-..
T Consensus       205 ~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~-~-----~~~~~v~~~  278 (498)
T KOG2118         205 LVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEV-P-----LEPLPVSES  278 (498)
T ss_pred             HHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCCEEHHHHHHHHHHHCCCCC-C-----CCCCHHHHH
T ss_conf             9887306144430011002101788888876587600003666520000444331233204334-5-----663003455


Q ss_pred             HCCCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHH-----HCCCCCCCCEEE
Q ss_conf             515657971788512323432013565116540776620466758899998742221000000-----001246773378
Q gi|254780426|r  167 LIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKK-----SMISAVSDNTFI  241 (320)
Q Consensus       167 ~~r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~-----~~i~~~~~g~~~  241 (320)
                      ..++...+|+++++.+.+..||+.+.|||+|.. +....|++|++|+ +++++|+.||.|...     ..+....-+.|.
T Consensus       279 ~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~-~~~~~ev~de~d~~~~~~~~~~~~~~~~~~~~  356 (498)
T KOG2118         279 ALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL-EEVVKEVEDEEDKEEIKFETGIFTLRGIGDLD  356 (498)
T ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEC-CCCCEEEEECCCH-HHHHCCCCCCCCCCCCCCCCCCEEECCCCCCC
T ss_conf             412545688743088889998731213688824-8762444641414-54302133412454440113441340553124


Q ss_pred             EECCCCHHHHH
Q ss_conf             30453599999
Q gi|254780426|r  242 VDARTDLEELA  252 (320)
Q Consensus       242 v~G~~~l~~l~  252 (320)
                      ....+.+.+..
T Consensus       357 ~~~v~~~~~~~  367 (498)
T KOG2118         357 AGAVTDIDQLG  367 (498)
T ss_pred             CCCCCHHHHHC
T ss_conf             55332254523


No 8  
>pfam03471 CorC_HlyC Transporter associated domain. This small domain is found in a family of proteins with the pfam01595 domain and two CBS domains with this domain found at the C-terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.
Probab=99.70  E-value=1.4e-16  Score=128.41  Aligned_cols=78  Identities=33%  Similarity=0.739  Sum_probs=71.4

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEE-EEECCEEEEEEEECCCEEEEEEE
Q ss_conf             46773378304535999999828888877774674317999999842347379889-97589599999951887899999
Q gi|254780426|r  234 AVSDNTFIVDARTDLEELAKIIGTDCNCLKGEQDVDSLGGLIFSVLDRIPARGEVV-LEIPGFEIVILDADVRCVRRVRI  312 (320)
Q Consensus       234 ~~~~g~~~v~G~~~l~~l~~~l~~~l~~~~~~~~~~Ti~G~i~~~l~~iP~~Ge~v-~~~~g~~f~V~~~~~~rI~~v~v  312 (320)
                      ++++|+|+++|.++|+++++.|+++++.    ++|+|||||+++++|++|++||++ .++++|+|+|++++++||.+|+|
T Consensus         2 ~~~~~~~~v~G~~~l~dl~~~~~~~l~~----~~~~TigG~i~~~l~~iP~~ge~~~i~~~~~~f~V~~~~~~rI~~v~i   77 (80)
T pfam03471         2 KLDDGSYLVDGRAPLDDLNELLGLDLPE----EDYDTLAGLVLELLGRIPEVGDKVEVDLGGLRFTVLEVDGRRIKKVRV   77 (80)
T ss_pred             EECCCEEEEEECCCHHHHHHHHCCCCCC----CCCEEHHHHHHHHHCCCCCCCCEEEEEECCEEEEEEEEECCEEEEEEE
T ss_conf             8889889998026999999987979998----652059999999868699999889999799899999911798989999


Q ss_pred             EEC
Q ss_conf             963
Q gi|254780426|r  313 RRL  315 (320)
Q Consensus       313 ~~l  315 (320)
                      +++
T Consensus        78 ~~~   80 (80)
T pfam03471        78 TKL   80 (80)
T ss_pred             EEC
T ss_conf             989


No 9  
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.70  E-value=7.3e-17  Score=130.34  Aligned_cols=106  Identities=20%  Similarity=0.254  Sum_probs=95.2

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf             129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP  175 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp  175 (320)
                      .+++++..++|+.++++++.+++|+++||++++ ++++|+++.+|++..             .....+.++| +++.+++
T Consensus         2 ~dv~~l~p~~tv~~a~~lm~~~~~~~~PVvd~~-~~lvGivt~~Di~~~-------------~~~~~v~~iM~~~~~~v~   67 (108)
T cd04596           2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGK-------------DPDTTIEKVMTKNPITVN   67 (108)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEECCC-CEEEEEEEHHHHHHC-------------CCCCCHHHHEECCCCCCC
T ss_conf             988898999979999999998599889999689-909999997997517-------------988726785004762059


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             78851232343201356511654077662046675889999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      +++++.++++.|.+++.+.++|+||+|.++|+||.+||+++
T Consensus        68 ~~~~~~~~~~~m~~~~~~~lPVVde~~~lvGiIT~~Dil~A  108 (108)
T cd04596          68 PKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLKA  108 (108)
T ss_pred             CCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf             99889999999998498778999169959999997996319


No 10 
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.67  E-value=5.5e-16  Score=124.59  Aligned_cols=109  Identities=17%  Similarity=0.189  Sum_probs=97.3

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf             129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP  175 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp  175 (320)
                      +++.++..++|+.++.+.+.+++++++||.+++. +++|+++.+|++.++..+.         ...++.++| +++..++
T Consensus         1 T~~~Tv~p~~tl~~a~~~~~~~~~~~~PVvd~~g-~lvGivt~~di~~~l~~~~---------~~~~V~~vM~~~v~tv~   70 (111)
T cd04639           1 THFETLSPADTLDDAADALLATTQHEFPVVDGDG-HLVGLLTRDDLIRALAEGG---------PDAPVRGVMRRDFPTVS   70 (111)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEEECCC-CEEEEEEHHHHHHHHHCCC---------CCCCHHHHCCCCCEEEC
T ss_conf             9887929989799999999971997899993899-8899998999999987269---------99705763546987998


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             7885123234320135651165407766204667588999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      +++++.++++.|.+++.+.++|||++|.++|+||.+||+|
T Consensus        71 ~~~~l~~~~~~m~~~~~~~lpVVd~~g~lvGivT~~Di~E  110 (111)
T cd04639          71 PSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf             9994999999999589988989957992999999788544


No 11 
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.66  E-value=9.5e-16  Score=123.07  Aligned_cols=119  Identities=18%  Similarity=0.286  Sum_probs=100.8

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCC----CCCCCCCCCHHHHC-CCCE
Q ss_conf             299986301036778979865981799841886642241029999987662235643----22333457678851-5657
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTN----NINLNIQLSESNLI-KNIL  172 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~----~~~~~~~~~l~~~~-r~~~  172 (320)
                      ++++++.++|+.++++.+.+++++++||++++.++++|+++.+|++.++..+.....    ........++.++| +++.
T Consensus         2 ~vvtv~~~~tl~ea~~~m~~~~v~~~PVvd~~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~v~   81 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNVI   81 (125)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCHHHHCCCHHHCCCCHHHHCCCCCE
T ss_conf             97797990949999999998399889999799995999999999999873354310121011023217899995668988


Q ss_pred             EECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             97178851232343201356511654077662046675889999
Q gi|254780426|r  173 FVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       173 ~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      ++++++++.++++.|.+++.|.++|+|++|.+.||||..||+.+
T Consensus        82 tv~~~~~l~~a~~~m~~~~i~~lpVvd~~g~~~GiIt~~DilrA  125 (125)
T cd04631          82 TITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA  125 (125)
T ss_pred             EECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf             99799998999999986395099999589939999988997369


No 12 
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.58  E-value=4.8e-15  Score=118.45  Aligned_cols=105  Identities=19%  Similarity=0.330  Sum_probs=94.0

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf             129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP  175 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp  175 (320)
                      .+++++..++|+.++++.+.+++|+++||+++  ++++|+++.+|++..             ....++.++| +++++++
T Consensus         2 kdvvtv~~d~tv~ea~~~m~~~~~~~~pVvd~--~~lvGivt~~Dll~~-------------~~~~~v~~iM~~~~~tv~   66 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGK-------------DPDETVEEIMSKDLVVAV   66 (107)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEEEC--CEEEEEEEHHHHCCC-------------CCCCCHHHHCCCCCCCCC
T ss_conf             88099899295999999999759978999989--999998876453159-------------987726786057860169


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             78851232343201356511654077662046675889999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      +++++.++++.|.+++.+.++|+||.|.++||||..||+.+
T Consensus        67 ~~~~l~~a~~~m~~~~~~~lpVvde~g~lvGiiT~~Dilra  107 (107)
T cd04610          67 PEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIRS  107 (107)
T ss_pred             CCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf             99869999999998299689699239989999994784439


No 13 
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57  E-value=2.1e-14  Score=114.22  Aligned_cols=119  Identities=14%  Similarity=0.198  Sum_probs=99.6

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHCC-CCE
Q ss_conf             1299986301036778979865981799841886642241029999987662235643---223334576788515-657
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTN---NINLNIQLSESNLIK-NIL  172 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~---~~~~~~~~~l~~~~r-~~~  172 (320)
                      .+++++..++|+.++++.+.+++++++||.+++. +++|+++.+|++.+.........   .........+.++|. ++.
T Consensus         2 rdvvtv~~~~tl~~a~~~m~~~~~~~lpVvd~~g-~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~v~~iM~~~~~   80 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDR-RLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV   80 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCC-CEEEEEEHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHCCCCCE
T ss_conf             8969989939799999999972997899995698-088885699999877504653101222105578898995779986


Q ss_pred             EECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             97178851232343201356511654077662046675889999
Q gi|254780426|r  173 FVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       173 ~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      .+++++++.++++.|.+++.|..+|+|+.|.+.|+||..||+.+
T Consensus        81 ~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGiIt~~Dil~A  124 (124)
T cd04600          81 TVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA  124 (124)
T ss_pred             EECCCCCHHHHHHHHHHCCCEEEEEEECCCEEEEEEEHHHHHCC
T ss_conf             99898979999999997793499999579989999978997469


No 14 
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.57  E-value=8e-14  Score=110.45  Aligned_cols=154  Identities=16%  Similarity=0.253  Sum_probs=124.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             88999999999979976898989999999873047757641312001299986301036778979865981799841886
Q gi|254780426|r   51 LSHHKGIRLPRIDASLEGIFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSL  130 (320)
Q Consensus        51 ~~~~eel~~l~~~~~~~G~i~~~E~~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~  130 (320)
                      ..++||+..++.+         .|.+-+.+  ++.+.++.|||+  .+++++..+++++++++++.+|++.-+||.+++.
T Consensus       220 DIdrddLe~llr~---------~elqa~~R--~~~~LtcadIMS--rdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~  286 (382)
T COG3448         220 DIDRDDLERLLRE---------TELQALRR--RMGELTCADIMS--RDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHR  286 (382)
T ss_pred             CCCHHHHHHHHHH---------HHHHHHHH--HHCCCCHHHHCC--CCCEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             5788999999999---------99999999--856430888637--4535017767757999999976865045326666


Q ss_pred             CCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC-CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEE
Q ss_conf             642241029999987662235643223334576788515-6579717885123234320135651165407766204667
Q gi|254780426|r  131 DNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIK-NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVS  209 (320)
Q Consensus       131 d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r-~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVT  209 (320)
                       .++|+|..+|++.....  .............++.+|. |+..+-..+++.+++..|-.++.|...|+|+.|.++||||
T Consensus       287 -rl~GiVt~~dl~~~a~~--~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvs  363 (382)
T COG3448         287 -RLVGIVTQRDLLKHARP--SPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVS  363 (382)
T ss_pred             -CEEEEEEHHHHHHCCCC--CHHHHHHCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCEEEEEE
T ss_conf             -10032448877601685--667775315998634434576335358970888888761377313668868883888862


Q ss_pred             HHHHHHHHHHH
Q ss_conf             58899998742
Q gi|254780426|r  210 YEDIVSVLMRD  220 (320)
Q Consensus       210 leDIle~ivGe  220 (320)
                      ..|++-++...
T Consensus       364 QtDliaal~r~  374 (382)
T COG3448         364 QTDLIAALYRN  374 (382)
T ss_pred             HHHHHHHHHHH
T ss_conf             78899999999


No 15 
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains.  It has been proposed that the CB
Probab=99.56  E-value=2.4e-14  Score=113.81  Aligned_cols=109  Identities=23%  Similarity=0.328  Sum_probs=97.4

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf             129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP  175 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp  175 (320)
                      ++++++.+++|+.++.+.+.+++++++||.+++  +++|+++.+|++.++.....        ...++.++| +++.+++
T Consensus         1 t~vvTv~p~~tv~ea~~~m~~~~i~~~~V~~~~--~~vGiiT~~Di~~~~~~~~~--------~~~~v~~iM~~~~~tv~   70 (111)
T cd04611           1 TQILTCPPDTSLAEAASRMRERRISSIVVVDDG--RPLGIVTERDILRLLASGPD--------LQTPVGEVMSSPLLTVP   70 (111)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEEECC--EEEEEEEEHHHHHHHHHCCC--------CCCCHHHHHCCCCEEEE
T ss_conf             971998896979999999997199889999799--99999985598998742488--------77888997106833997


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             7885123234320135651165407766204667588999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      +++++.++++.|.+++.+.++|+||+|.++|+||..||+.
T Consensus        71 ~~~~~~~a~~~m~~~~i~~lpVvd~~~~~vGiiT~~Dilr  110 (111)
T cd04611          71 ADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             CCCCHHHHHHHHHHHCCEEEEEECCCCEEEEEEEHHHHHC
T ss_conf             8999999999999718739999946998999998568427


No 16 
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55  E-value=3.9e-14  Score=112.52  Aligned_cols=117  Identities=15%  Similarity=0.156  Sum_probs=96.7

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCC--CCCCCCCCCCCHHHHCC-CCEEE
Q ss_conf             2999863010367789798659817998418866422410299999876622356--43223334576788515-65797
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAK--TNNINLNIQLSESNLIK-NILFV  174 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~--~~~~~~~~~~~l~~~~r-~~~~V  174 (320)
                      +++++..++++.++++.+.+++++++||.+++. +++|+++.+|++.+.......  ...........+.++|. +++++
T Consensus         2 ~vitv~~d~~l~~a~~~m~~~~i~~lPVVd~~g-~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~v~~iM~~~~itv   80 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAG-ELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSV   80 (122)
T ss_pred             CCEEECCCCCHHHHHHHHHHHCCCEEEEEECCC-CEEEEEEHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHCCCCCEEE
T ss_conf             999968929799999999971994899991898-2999999899876554001200344314534689999686898799


Q ss_pred             CCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             17885123234320135651165407766204667588999
Q gi|254780426|r  175 PSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       175 pe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      ++++++.+++..|.+++.+..+|+|+.|.++||||..||+.
T Consensus        81 ~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiIt~~Dilr  121 (122)
T cd04635          81 TPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             CCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf             89693999999889809988989937998999999799636


No 17 
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55  E-value=3.5e-14  Score=112.79  Aligned_cols=119  Identities=16%  Similarity=0.285  Sum_probs=98.1

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCC------CCCCCCCCCHHHHC-C
Q ss_conf             1299986301036778979865981799841886642241029999987662235643------22333457678851-5
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTN------NINLNIQLSESNLI-K  169 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~------~~~~~~~~~l~~~~-r  169 (320)
                      .+++++..++++.++++++.+++++++||++++. +++|+++.+|++.++........      ........++.++| +
T Consensus         1 kdvvTv~~~~~l~~a~~lm~~~~i~~lPVvd~~g-~lvGiiT~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~iM~~   79 (128)
T cd04632           1 EDVITVREDDSVGKAINVLREHGISRLPVVDDNG-KLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS   79 (128)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-CEEEEEEHHHHHHHHHCCCHHCCHHHHCCHHHHHHCCCHHHHCCC
T ss_conf             9986989959299999999983997799996899-789999889999988532101011221001223406799996679


Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEE--ECCCCCEEEEEHHHHHHH
Q ss_conf             65797178851232343201356511654--077662046675889999
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVI--DEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVv--DE~G~~~GiVTleDIle~  216 (320)
                      +++++++++++.+++..|.+++.+..+|+  |+.|.++||||..||+.+
T Consensus        80 ~vitv~~~~~i~~a~~~M~~~~i~~lpVv~~dd~~~lvGIiT~~DilrA  128 (128)
T cd04632          80 PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA  128 (128)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf             9879999293999999999779978966847899989999996996469


No 18 
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain.  Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.55  E-value=3.1e-14  Score=113.16  Aligned_cols=108  Identities=18%  Similarity=0.302  Sum_probs=96.2

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECC
Q ss_conf             29998630103677897986598179984188664224102999998766223564322333457678851-56579717
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPS  176 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe  176 (320)
                      +++++..++++.|+.+.+.+++++++||.++  ++++|+++.+|++.++.....         ..++.++| ++++++++
T Consensus         2 ~vvtv~p~~sl~ea~~~m~~~~i~~~pVvd~--~~lvGiit~~Di~~~~~~~~~---------~~~V~~~M~~~~~tv~~   70 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLE---------LAKVKDVMTKDVITIDE   70 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHHHCCCEEEEEEC--CEEEEEEEHHHHHHHHHCCCC---------CCHHHHHCCCCCCEECC
T ss_conf             9479689498999999999709988999989--999999966898999873797---------78034520489729858


Q ss_pred             CCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             8851232343201356511654077662046675889999
Q gi|254780426|r  177 SMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       177 ~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      ++++.++++.|++++.+..+|+|+.|.++||||..||+.+
T Consensus        71 d~~l~~~~~~m~~~~v~~l~Vvd~~~~lvGIiT~~Dllka  110 (110)
T cd04588          71 DEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILRS  110 (110)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf             9969999999987799789999669999999982483468


No 19 
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC.  SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus).  SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB.  It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.55  E-value=2.3e-14  Score=113.95  Aligned_cols=109  Identities=19%  Similarity=0.245  Sum_probs=93.9

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECC
Q ss_conf             29998630103677897986598179984188664224102999998766223564322333457678851-56579717
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPS  176 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe  176 (320)
                      ++++++.++|+.++++.+.+++++++||.++  ++++|+++.+|++.+...+....        .....+| +++.++++
T Consensus         2 dvvtv~p~~tl~~a~~~m~~~~~~~lpVvd~--~~l~Givt~~di~~~~~~~~~~~--------~~v~~im~~~~~~v~~   71 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREAT--------VLVGDVMTRDPVTASP   71 (111)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHHCCCCCC--------CEEEEEECCCCCCCCC
T ss_conf             8499999295999999999719948999999--99999998999998775147777--------5699997079605299


Q ss_pred             CCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             8851232343201356511654077662046675889999
Q gi|254780426|r  177 SMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       177 ~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      ++++.+++..|++++.+..+|+|++|.+.|+||..||+.+
T Consensus        72 ~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GiiT~~DilrA  111 (111)
T cd04612          72 DETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLRA  111 (111)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf             9979999999997698199999689989999986886349


No 20 
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in  the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms.  They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.55  E-value=4.6e-14  Score=112.02  Aligned_cols=117  Identities=17%  Similarity=0.235  Sum_probs=98.6

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCC---CCCCCCCHHHHC-CCCEE
Q ss_conf             29998630103677897986598179984188664224102999998766223564322---333457678851-56579
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNI---NLNIQLSESNLI-KNILF  173 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~---~~~~~~~l~~~~-r~~~~  173 (320)
                      ++++++.++|+.++++.+.+++++++||.++  ++++|+++.+|++.++..........   .......+.++| +++++
T Consensus         2 dpvti~~~~tl~ea~~~m~~~~~~~lpVvd~--~~lvGiit~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~t   79 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPIT   79 (122)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHCCCCCEE
T ss_conf             9899689296999999999739988999989--99999998899998775046553335542120388999957789889


Q ss_pred             ECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             7178851232343201356511654077662046675889999
Q gi|254780426|r  174 VPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       174 Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      +++++++.+++..|.+++.+.++|+|+.|.+.|+||..||+.+
T Consensus        80 v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiiT~~DilkA  122 (122)
T cd04585          80 VSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFRA  122 (122)
T ss_pred             EECCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf             9388669999999987598789999589989999987897469


No 21 
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53  E-value=7.2e-14  Score=110.74  Aligned_cols=115  Identities=17%  Similarity=0.304  Sum_probs=95.4

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf             129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP  175 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp  175 (320)
                      .+++++..++|+.++++.+.+++||++||.+++. +++|+++.+|++.++......  .........+.++| +++.++.
T Consensus         1 k~Vvtv~~~~tl~~A~~~m~~~~i~~lPVvd~~g-klvGiit~~Di~~~~~~~~~~--~~~~~~~~~V~~iM~~~~~tv~   77 (116)
T cd04643           1 EEVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEG-KYVGTISLTDILWKLKGLENL--DLERLVDLKVIDVMNTDVPVII   77 (116)
T ss_pred             CCEEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-EEEEEEEHHHHHHHHHCCCCC--CHHHHCCCCHHHHHCCCCEEEE
T ss_conf             9769999949299999999974998798986999-499998899999987436532--2023116687795156988990


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             78851232343201356511654077662046675889999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      ++.++.+++..|.+++  +.+|+|+.|.++||||..|||.+
T Consensus        78 ~~~~i~~~~~~m~~~~--~lpVVD~~~~lvGIITr~DilkA  116 (116)
T cd04643          78 DDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILKA  116 (116)
T ss_pred             CCCCHHHHHHHHHHCC--EEEEEECCCEEEEEEEHHHHHCC
T ss_conf             7999999999998789--89999459999999992795579


No 22 
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53  E-value=9.2e-14  Score=110.04  Aligned_cols=116  Identities=13%  Similarity=0.265  Sum_probs=98.4

Q ss_pred             EEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCC--CCCCCCCCCHHHHC-CCCEEEC
Q ss_conf             99986301036778979865981799841886642241029999987662235643--22333457678851-5657971
Q gi|254780426|r   99 INAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTN--NINLNIQLSESNLI-KNILFVP  175 (320)
Q Consensus        99 i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~--~~~~~~~~~l~~~~-r~~~~Vp  175 (320)
                      ++++..++++.++++.+.+++++++||++++. +++|+++.+|++.++........  ........++.++| +++.+++
T Consensus         3 vvtv~~~~tl~~a~~~m~~~~i~~lpVvd~~~-~lvGiit~~Dil~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~   81 (122)
T cd04803           3 VVTLSEDDSLADAEELMREHRIRHLPVVNEDG-KLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLTVT   81 (122)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-CEEEEEEHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHCCCCCEEEC
T ss_conf             19998969999999999974997899990898-68889659999999984376420121025358899996689986998


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             7885123234320135651165407766204667588999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      +++++.++++.|.+++.+..+|+|+.|.++|+||..||+.
T Consensus        82 ~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGiiT~~Dilk  121 (122)
T cd04803          82 PDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHEEE
T ss_conf             9998999999998568509999947998999999515564


No 23 
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC.  SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus).  SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB.  It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.52  E-value=6.1e-14  Score=111.22  Aligned_cols=112  Identities=17%  Similarity=0.230  Sum_probs=96.3

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf             129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP  175 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp  175 (320)
                      .+++++..++++.++++.+.+++++++||++++. +++|+++.+|++.++.....       .....+.++| +++.++.
T Consensus         1 rdvvtv~~~~tl~ea~~~m~~~~~~~~pVvd~~~-~lvGiit~~Dl~~~l~~~~~-------~~~~~v~~im~~~~~~v~   72 (114)
T cd04613           1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDG-RLVGIVSLDDIREILFDPSL-------YDLVVASDIMTKPPVVVY   72 (114)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-EEEEEEEHHHHHHHHHHCCC-------CCCCEEEHHCCCCCEEEE
T ss_conf             9976958909899999999861997899992899-49999999999999970566-------557293120362965991


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEE-CCCCCEEEEEHHHHHHH
Q ss_conf             788512323432013565116540-77662046675889999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVID-EHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvD-E~G~~~GiVTleDIle~  216 (320)
                      +++++.++++.|++++.+..+||| |.|.++|+||..|||.+
T Consensus        73 ~~~~l~~a~~~m~~~~~~~lPVVd~~~g~lvGiit~~Dil~A  114 (114)
T cd04613          73 PEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLSA  114 (114)
T ss_pred             CCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf             367889999999975975999998999989999998995359


No 24 
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.52  E-value=6.3e-14  Score=111.10  Aligned_cols=101  Identities=21%  Similarity=0.283  Sum_probs=88.6

Q ss_pred             EEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECCC
Q ss_conf             9998630103677897986598179984188664224102999998766223564322333457678851-565797178
Q gi|254780426|r   99 INAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPSS  177 (320)
Q Consensus        99 i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe~  177 (320)
                      -+++.+++|+.++.++|.+++++++||++++  +++|+++.+|+...              ...++.++| +++.++.++
T Consensus         3 pVtV~pd~tV~eA~~lM~~~~i~~lPVvd~~--klvGIvt~rDi~~~--------------~~~~v~d~Mt~~v~tv~p~   66 (104)
T cd04594           3 DIKVKDYDKVYEAKRIMIENDLLSLPVVDYN--KFLGAVYLKDIENA--------------TYGDVVDYIVRGIPYVRLT   66 (104)
T ss_pred             CEEECCCCCHHHHHHHHHHHCCCEEEEEECC--EEEEEEEHHHHHHC--------------CCCCHHHEEECCCEEECCC
T ss_conf             8798999939999999998398878899899--99999997996524--------------6998445476398889998


Q ss_pred             CCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             851232343201356511654077662046675889999
Q gi|254780426|r  178 MLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       178 ~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      +++.++++.|.+++.+...|+|+ |.++||||+.||+++
T Consensus        67 ~~l~ea~~lM~~~~i~~lPVvd~-gklvGIIT~~Dil~A  104 (104)
T cd04594          67 STAEEAWEVMMKNKTRWCPVVDD-GKFKGIVTLDSILDA  104 (104)
T ss_pred             CCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHCC
T ss_conf             97999999999869787899989-999999996895378


No 25 
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.51  E-value=9.2e-14  Score=110.05  Aligned_cols=131  Identities=23%  Similarity=0.314  Sum_probs=116.2

Q ss_pred             HHHHHHHHHC-----CCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHH
Q ss_conf             9999998730-----47757641312001299986301036778979865981799841886642241029999987662
Q gi|254780426|r   74 EKEIFNNILR-----FRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISH  148 (320)
Q Consensus        74 E~~ii~~vl~-----l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~  148 (320)
                      -+.||++++.     =+=.+|.|||+|..+..++..+++++++.....+++||||||.+.+. .++|+|..||++.    
T Consensus       170 VAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~-kvvGvVt~rDv~~----  244 (432)
T COG4109         170 VATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSM-KVVGVVTMRDVLD----  244 (432)
T ss_pred             HHHHHHHHHHHHHHHHHEEEHHHHCCCCCCCEECCCCCCHHHHHHHHHHCCCCCCCEECCCC-EEEEEEEEHHHHC----
T ss_conf             99999899877666443255877446443432324645099999999971987341331442-6999998346444----


Q ss_pred             CCCCCCCCCCCCCCCHHHHCCC-CEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHH
Q ss_conf             2356432233345767885156-579717885123234320135651165407766204667588999987
Q gi|254780426|r  149 MYAKTNNINLNIQLSESNLIKN-ILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLM  218 (320)
Q Consensus       149 ~~~~~~~~~~~~~~~l~~~~r~-~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~iv  218 (320)
                               ..+..++...|.. |++|-..+++..+-+.|--+...|..|+|+.-.+.|+||..|+|+.+-
T Consensus       245 ---------~~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq  306 (432)
T COG4109         245 ---------KKPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             ---------CCCCCCHHHHHCCCCEEECCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHHHHHH
T ss_conf             ---------79986177774269755425226889988887645526568837861898988999999998


No 26 
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51  E-value=9.7e-14  Score=109.88  Aligned_cols=118  Identities=16%  Similarity=0.237  Sum_probs=93.0

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCC-------CCCCCCCHHHHCC
Q ss_conf             129998630103677897986598179984188664224102999998766223564322-------3334576788515
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNI-------NLNIQLSESNLIK  169 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~-------~~~~~~~l~~~~r  169 (320)
                      ++++++..++++.++++.+.+++++.+||.+++. +++|+++.+|+..............       ............+
T Consensus         1 s~Vitv~~~~~l~eA~~lm~~~~i~~lPVvd~~g-~lvGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
T cd04642           1 SKVVSIDSDERVLDAFKLMRKNNISGLPVVDEKG-KLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR   79 (126)
T ss_pred             CCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCC-EEEEEEEHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf             9579999959999999999980987899992899-099999989976555144303444455554203344234202447


Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             6579717885123234320135651165407766204667588999
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      +++.+++++++.++++.|.+++.|..+||||.|.++||||+.||+.
T Consensus        80 ~~itv~~~~~l~~~~~~m~~~~i~~lpVVD~~~~lvGIIs~~Dil~  125 (126)
T cd04642          80 PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf             9989999693999999999869749999989995999999289421


No 27 
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990    Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase     IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP .  Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH     IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=99.50  E-value=1.2e-13  Score=109.27  Aligned_cols=177  Identities=22%  Similarity=0.306  Sum_probs=137.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEE
Q ss_conf             889999999999799768989-----899999998730477576413120012999863010367789798659817998
Q gi|254780426|r   51 LSHHKGIRLPRIDASLEGIFS-----ETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPV  125 (320)
Q Consensus        51 ~~~~eel~~l~~~~~~~G~i~-----~~E~~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV  125 (320)
                      .+||.++..-++...-=|+|+     +.+.+++++|=++.     ..++-|.+.+++.++.|+.++.+++.++++|-+||
T Consensus        44 TVTE~~MAiAMA~~GGiGVIH~N~~~E~Qae~V~~VKr~e-----~g~i~redp~t~~P~~tv~~~~~l~~~~gisG~PV  118 (476)
T TIGR01302        44 TVTESRMAIAMAREGGIGVIHRNMSIERQAEEVKRVKRAE-----NGIISREDPVTISPETTVEDVLELMERKGISGIPV  118 (476)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC-----CCEEEECCCEEECCCCHHHHHHHHCCCCCCCEEEE
T ss_conf             2459999999985499479944799899999988752320-----66065148868479851899997322157654578


Q ss_pred             ECCCCC------CCCCCEEH---HHHHHHHHHCCCCCCCCCCCCCCC--HHHHCC---CCEEECCCCCHHHHHHHHHCCC
Q ss_conf             418866------42241029---999987662235643223334576--788515---6579717885123234320135
Q gi|254780426|r  126 YKNSLD------NPRGMVHM---RDVISYISHMYAKTNNINLNIQLS--ESNLIK---NILFVPSSMLVSDLLTNIQESR  191 (320)
Q Consensus       126 ~~~~~d------~iiGiv~~---kDll~~~~~~~~~~~~~~~~~~~~--l~~~~r---~~~~Vpe~~~l~~lL~~m~~~~  191 (320)
                      .++..+      +++|||+.   ||+..+.            +...+  +.++|.   .++.+|+...+.++++.|+++|
T Consensus       119 v~~G~~~g~ktGKLvGIiT~sqWrD~~f~~------------~~~~~daV~~~MT~~~~~iT~~e~i~~e~A~~~L~~~r  186 (476)
T TIGR01302       119 VEDGKDGGPKTGKLVGIITKSQWRDVRFVK------------DKGKKDAVSEVMTPREELITVPEGIDLEEALKVLHKHR  186 (476)
T ss_pred             EECCCCCCCCEEEEEEEEECCCEEECCCCC------------CCCCCCCEEECCCCCCCCEEECCCCCHHHHHHHHHHHC
T ss_conf             836889897100699998377225411010------------46883301011203764348416777899999988608


Q ss_pred             CCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCC---CCCEEEEECCCCH--HHHHHH
Q ss_conf             65116540776620466758899998742221000000001246---7733783045359--999998
Q gi|254780426|r  192 IRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAV---SDNTFIVDARTDL--EELAKI  254 (320)
Q Consensus       192 ~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~---~~g~~~v~G~~~l--~~l~~~  254 (320)
                      ..-++|||+.|.++||||+.||....      +    .|...+-   .+|.|+|-+.+.-  +|++|.
T Consensus       187 ~ekLpvVd~~~~lVgLiT~~Di~~~~------~----~P~A~kd~vG~~GrL~VgAAvg~r~~D~~R~  244 (476)
T TIGR01302       187 IEKLPVVDKDGELVGLITVKDIVKRR------E----FPHASKDTVGENGRLIVGAAVGTREDDLERA  244 (476)
T ss_pred             CCEEEEECCCCCEEEEEEHHHHHHHH------H----CCCCCCCCCCCCCEEEEEEEECCCCCCHHHH
T ss_conf             65047882789889998644788986------3----8887788748886089998846898618999


No 28 
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49  E-value=6.5e-14  Score=111.05  Aligned_cols=110  Identities=20%  Similarity=0.334  Sum_probs=96.9

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECC
Q ss_conf             29998630103677897986598179984188664224102999998766223564322333457678851-56579717
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPS  176 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe  176 (320)
                      ++++++.++++.++.+.+.+++++.+||++++. +++|+++.+|++.++..+..        ...++.++| ++++++++
T Consensus         2 ~vvtv~~~~tl~ea~~~m~~~~~~~~~Vvd~~~-~lvGiiT~~Di~~~~~~~~~--------~~~~v~~~m~~~~~tv~~   72 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDE-RPIGIVTERDIVRAVAAGID--------LDTPVSEIMTRDLVTVDP   72 (112)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-CEEEEEECCHHHHHHHCCCC--------CCCCEEEEECCCCEEECC
T ss_conf             978978939599999999862998899993998-29999982045889864874--------344204565167167879


Q ss_pred             CCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             8851232343201356511654077662046675889999
Q gi|254780426|r  177 SMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       177 ~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      ++++.+++..|.+++.+..+|+|+.|.++|+||..||+.|
T Consensus        73 ~~~l~~a~~~m~~~~~~~l~Vvd~~g~lvGiit~~Dilke  112 (112)
T cd04624          73 DEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVRE  112 (112)
T ss_pred             CCCHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHCCC
T ss_conf             9989999999997498399899899999999980772569


No 29 
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.49  E-value=1.9e-13  Score=108.01  Aligned_cols=110  Identities=21%  Similarity=0.318  Sum_probs=95.3

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHH-HHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf             2999863010367789798659817998418866422410299999-8766223564322333457678851-5657971
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVI-SYISHMYAKTNNINLNIQLSESNLI-KNILFVP  175 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll-~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp  175 (320)
                      ++++++.++|+.++++.+.+++++.+||.++  ++++|+++.+|++ ..+..+..       ....++.++| +++++++
T Consensus         2 ~~vti~~~~tl~~a~~~m~~~~~~~v~V~d~--~~~vGiiT~~Di~~~~~~~~~~-------~~~~~v~~iM~~~~i~v~   72 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRD-------PDTTTVGDVMTRGVVTVT   72 (113)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEECHHHHHHHHHCCCC-------HHHCCHHHHHCCCCEEEE
T ss_conf             9779689398999999999729988999989--9999999632788999973998-------200776786415767998


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             78851232343201356511654077662046675889999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      ++.++.++++.|++++.|..+|+|+.|.++|+||..||+.+
T Consensus        73 ~~~~l~~a~~~m~~~~i~~lpVvd~~~~~vGiIt~~Dilra  113 (113)
T cd04622          73 EDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLARA  113 (113)
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf             89987999999985796589999089989999997995477


No 30 
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48  E-value=3.5e-13  Score=106.21  Aligned_cols=117  Identities=19%  Similarity=0.278  Sum_probs=98.1

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHC-CCCE
Q ss_conf             1299986301036778979865981799841886642241029999987662235643---22333457678851-5657
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTN---NINLNIQLSESNLI-KNIL  172 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~---~~~~~~~~~l~~~~-r~~~  172 (320)
                      ++++++..++++.++++.+.+++++++||.+++  .++|+++.+|++.++........   ........++.++| +++.
T Consensus         1 T~viTv~p~~tl~~a~~~m~~~~i~~lpVvd~~--~lvGivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~iM~~~~i   78 (122)
T cd04637           1 TRVVTVEMDDRLEEVREIFEKHKFHHLLVVEDN--ELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI   78 (122)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEEECC--EEEEEEEHHHHHHHHHHCCCCCHHHHCCCHHHCCCHHHHCCCCCE
T ss_conf             974998896969999999987499889999899--999998889999875002453102211212306899994638983


Q ss_pred             EECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             9717885123234320135651165407766204667588999
Q gi|254780426|r  173 FVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       173 ~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      ++++++++.+++..|.+++.+..+|+|+.|.++||||..||+.
T Consensus        79 tv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~lvGiIT~~Diik  121 (122)
T cd04637          79 TVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             EECCCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHHC
T ss_conf             9999984999999999749308999968998999999688327


No 31 
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48  E-value=3.2e-13  Score=106.50  Aligned_cols=115  Identities=14%  Similarity=0.241  Sum_probs=94.6

Q ss_pred             EEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHH--HH-CCCCEEEC
Q ss_conf             9998630103677897986598179984188664224102999998766223564322333457678--85-15657971
Q gi|254780426|r   99 INAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSES--NL-IKNILFVP  175 (320)
Q Consensus        99 i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~--~~-~r~~~~Vp  175 (320)
                      .++++.++|+.++.+.+.+++++|+||.+++..+++|+++.+|++.++.................+.  .+ .+++..++
T Consensus         3 fi~v~~~~sl~~a~~lm~~~~i~rlpVvd~~~g~lvGIiT~~dil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~viti~   82 (123)
T cd04627           3 FIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISIN   82 (123)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHCCCCCCEEEC
T ss_conf             64848989299999999749977799995899949999997999999986376566144541120023323767717989


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHH
Q ss_conf             78851232343201356511654077662046675889
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDI  213 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDI  213 (320)
                      +++++.++++.|.+++.+-..|||+.|.++|++|..||
T Consensus        83 ~d~~l~~A~~lM~~~~i~~lpVVD~~g~lvGiiS~~Dl  120 (123)
T cd04627          83 GDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV  120 (123)
T ss_pred             CCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHE
T ss_conf             99959999999998098878698599969999892542


No 32 
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47  E-value=2.5e-13  Score=107.19  Aligned_cols=118  Identities=17%  Similarity=0.216  Sum_probs=96.3

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCC---------------CCCCCCC
Q ss_conf             1299986301036778979865981799841886642241029999987662235643---------------2233345
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTN---------------NINLNIQ  161 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~---------------~~~~~~~  161 (320)
                      ++++++..++|+.++.+.+.+++++++||.+++. +++|+++.+|++.....+.....               .......
T Consensus         2 ~~vitv~~~~tl~~a~~~m~~~~i~~lpVvd~~~-~lvGiit~~Dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDG-RLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG   80 (135)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEEECCC-EEEEEEEHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCCC
T ss_conf             9998999939399999999973996799990899-799999818976445415654114555430231034554304479


Q ss_pred             CCHHHHC-CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             7678851-565797178851232343201356511654077662046675889999
Q gi|254780426|r  162 LSESNLI-KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       162 ~~l~~~~-r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      .++.++| ++++++++++++.+++..|.+++.+..+|+|+ |.++|+||..||+.+
T Consensus        81 ~~V~~iM~~~~~~v~~~~~l~~~~~~m~~~~i~~lpVvd~-~~lvGiIt~~DilkA  135 (135)
T cd04586          81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRG-GRLVGIVSRADLLRA  135 (135)
T ss_pred             CCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHCC
T ss_conf             8989957899879959795999999999759609999999-999999997996459


No 33 
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47  E-value=2.7e-13  Score=106.96  Aligned_cols=115  Identities=20%  Similarity=0.274  Sum_probs=95.5

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCC---CCCCCCCHHHHC-CCCEE
Q ss_conf             29998630103677897986598179984188664224102999998766223564322---333457678851-56579
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNI---NLNIQLSESNLI-KNILF  173 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~---~~~~~~~l~~~~-r~~~~  173 (320)
                      ++++++.++|+.++.+.+.+++++++||.++  ++++|+++.+|++..+..........   .......+.++| +++++
T Consensus         2 ~vvtv~~~~tl~ea~~~m~~~~i~~lpVvd~--~~~vGiiT~~Di~~~l~~~~~~~~~~~~~~~~~~~~V~~iM~~~~~t   79 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVIT   79 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHHCCCEEEEEEC--CEEEEEEEHHHHHHHHHHCCCCCCCHHHCCCCCCCEEECCCCCCCEE
T ss_conf             9479799398999999999709988999989--99887875999999997446533201102451366855334379889


Q ss_pred             ECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             717885123234320135651165407766204667588999
Q gi|254780426|r  174 VPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       174 Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      +++++++.+++..|.+++.+..+|+|+ |.++||||..||+.
T Consensus        80 v~~~~~l~~~~~~m~~~~~~~lpVvd~-~~lvGIIT~~Dilr  120 (121)
T cd04633          80 IEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             EECCCCHHHHHHHHHHHCCEEEEEEEC-CEEEEEEEHHHHHC
T ss_conf             909898999999989719859999989-99999998346028


No 34 
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein.  IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.47  E-value=1.7e-13  Score=108.27  Aligned_cols=106  Identities=26%  Similarity=0.367  Sum_probs=91.0

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC--CCCEEE
Q ss_conf             129998630103677897986598179984188664224102999998766223564322333457678851--565797
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI--KNILFV  174 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~--r~~~~V  174 (320)
                      .+++++..++|+.++++.+.+++++++||++++. +++|+++.+|+....            ....++.++|  .+....
T Consensus         2 rdvvtv~~~~sl~~a~~~m~~~~~~~~pVvd~~~-~l~Giit~~Dl~~~~------------~~~~~v~~iM~~~~~~~~   68 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDG-KLVGIVTNRDLRFET------------DLDKPVSEVMTPENLLTT   68 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEEECCC-EEEEEEEHHHHHHHC------------CCCCCCEEEEECCCEEEE
T ss_conf             8898979939699999999984998899994899-698788776776505------------767860357705750870


Q ss_pred             CCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             17885123234320135651165407766204667588999
Q gi|254780426|r  175 PSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       175 pe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      ++++++.++++.|++++.+.++|+|+.|.++|+||+.||+.
T Consensus        69 ~~~~~~~~~~~~m~~~~i~~lpVvd~~~~lvGiIt~~Dilk  109 (110)
T cd04601          69 VEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHCC
T ss_conf             47687999999998668519999988999999999598437


No 35 
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.47  E-value=3.1e-13  Score=106.58  Aligned_cols=118  Identities=19%  Similarity=0.204  Sum_probs=96.6

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCC----------------CCCCC
Q ss_conf             12999863010367789798659817998418866422410299999876622356432----------------23334
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNN----------------INLNI  160 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~----------------~~~~~  160 (320)
                      .+++++..++++.++.+.+.+++++++||.+++. +++|+++.+|++.++.........                .....
T Consensus         1 kdVitv~p~~tl~ea~~~m~~~~i~~lpVvd~~g-~lvGivT~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (135)
T cd04621           1 EDIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNG-KPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV   79 (135)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-EEEEEEEHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCC
T ss_conf             9868989949799999999874997799995999-399999879988666314544310233333101002332101446


Q ss_pred             CCCHHHHCC-CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             576788515-65797178851232343201356511654077662046675889999
Q gi|254780426|r  161 QLSESNLIK-NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       161 ~~~l~~~~r-~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      ...+.++|+ +++.+++++++.++++.|.+++.+-.+|+|+ |.++||||..||+.|
T Consensus        80 ~~~v~diMt~~vitv~~d~~l~~a~~~M~~~~i~~lPVvd~-~~lvGiIt~~Dilre  135 (135)
T cd04621          80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICRE  135 (135)
T ss_pred             CCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHCCC
T ss_conf             88998938899889989893999999999719988999989-999999985881168


No 36 
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein.  These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.46  E-value=4.2e-13  Score=105.72  Aligned_cols=112  Identities=16%  Similarity=0.271  Sum_probs=98.1

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf             129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP  175 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp  175 (320)
                      .++..+..++|+.++++++.+++++.+||++++. +++|+++-+|+.+++..+...       ...++.++| +++.++.
T Consensus         2 ~~vp~V~~~~si~ea~~~m~~~~~~~v~Vvd~~~-~lvGiiT~~Dl~r~~~~~~~~-------~~~~v~~iM~~~~~tv~   73 (114)
T cd04604           2 DALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDG-RLVGIFTDGDLRRALEKGLDI-------LTLPVADVMTRNPKTID   73 (114)
T ss_pred             CCCCEECCCCCHHHHHHHHHHCCCCEEEEECCCC-EEEEEEEHHHHHHHHHCCCCC-------CCCCHHHHHCCCCEEEE
T ss_conf             9477889949399999999976997899997999-399999899999998716664-------56797474356758993


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             78851232343201356511654077662046675889999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      ++.++.+++..|++++.+..+|+|+.|.+.|+||..||+.+
T Consensus        74 ~~~~i~~a~~~m~~~~i~~lpVvd~~~~~vGiit~~DllkA  114 (114)
T cd04604          74 PDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLRA  114 (114)
T ss_pred             CCCCHHHHHHHHHHCCEEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf             89886999999987795799999899989999988995469


No 37 
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream.   The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives.  The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds.  CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.46  E-value=3.4e-13  Score=106.34  Aligned_cols=107  Identities=21%  Similarity=0.353  Sum_probs=90.1

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECC
Q ss_conf             29998630103677897986598179984188664224102999998766223564322333457678851-56579717
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPS  176 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe  176 (320)
                      +++++..++|+.++++++.+++++++||.++  ++++|+++.+|++.++..+...       ...++.++| +++..+++
T Consensus         2 dvvtv~p~~tl~~a~~~m~~~~i~~lpVvd~--~~lvGiit~~Di~~~~~~~~~~-------~~~~v~~iM~~~~~~v~~   72 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAK-------FSLPVREVMGEPLPTVDP   72 (110)
T ss_pred             CEEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHHCCCCC-------CCCEEEEEEECCCEEECC
T ss_conf             8069999497999999999819988999989--9999999999999998638764-------687698456759459789


Q ss_pred             CCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             885123234320135651165407766204667588999
Q gi|254780426|r  177 SMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       177 ~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      ++++.+++..|.+.  +.++|+||.|.+.||||..||+.
T Consensus        73 ~~~l~~~~~~~~~~--~~~~vV~~~g~lvGIvT~~Dil~  109 (110)
T cd04609          73 DAPIEELSELLDRG--NVAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             CCCHHHHHHHHHHC--CCCEEEECCCEEEEEEEHHHHHC
T ss_conf             89499999988767--98249961999999998368529


No 38 
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in  the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms.  They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.44  E-value=7.6e-13  Score=104.03  Aligned_cols=116  Identities=17%  Similarity=0.298  Sum_probs=95.5

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCC--CCCCCCCCCCCHHHHC-CCCEEE
Q ss_conf             2999863010367789798659817998418866422410299999876622356--4322333457678851-565797
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAK--TNNINLNIQLSESNLI-KNILFV  174 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~--~~~~~~~~~~~l~~~~-r~~~~V  174 (320)
                      +++++..++++.++++++.+++++++||.+++. +++|+++.+|++.+.......  ..........++.++| ++++++
T Consensus         2 ~vvtv~~~~sl~~a~~lm~~~~~~~lpVvd~~~-~lvGiit~~Di~~~~~~~~~~~~~~~~~~~~~~~V~~iM~~~~~tv   80 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEG-RLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVITV   80 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-CEEEEEEHHHHHHHHCCCCCHHHHHHCCCCCCCCHHHHCCCCCCEE
T ss_conf             988968929899999999972998899990899-3999965899875220122002444202514689999667998589


Q ss_pred             CCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             17885123234320135651165407766204667588999
Q gi|254780426|r  175 PSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       175 pe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      ++++++.++++.|.+++.+..+|+|+ |.++||||..||+.
T Consensus        81 ~~~~~l~~a~~~m~~~~i~~lpVvd~-~~lvGivt~~Dilr  120 (121)
T cd04584          81 HPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             CCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHC
T ss_conf             89995999999988669619999999-99999998226006


No 39 
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44  E-value=6.2e-13  Score=104.61  Aligned_cols=111  Identities=23%  Similarity=0.321  Sum_probs=96.2

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECC
Q ss_conf             29998630103677897986598179984188664224102999998766223564322333457678851-56579717
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPS  176 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe  176 (320)
                      ++++++.++|+.++.+.+.+++++.+||.+++ +.++|+++.+|++.++......      ....++.++| ++++++.+
T Consensus         2 ~vvti~~~~tl~ea~~~m~~~~~~~l~Vvd~~-~~l~Giit~~Di~~~~~~~~~~------~~~~~V~~iM~~~~~~v~~   74 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGAS------ALDTPVSEIMTRNVITVTP   74 (113)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CCEEEEEEHHHHHHHHHHCCCC------HHHCHHHHHCCCEEEEEEC
T ss_conf             97696893979999999997399889999089-8299999768999999864998------4664012312110289916


Q ss_pred             CCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             8851232343201356511654077662046675889999
Q gi|254780426|r  177 SMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       177 ~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      ++++.++++.|.+++.+..+|+|+ |.++|+||..||+.+
T Consensus        75 ~~~l~~a~~~m~~~~i~~lpV~d~-~~lvGiit~~Dllra  113 (113)
T cd04623          75 DDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVKA  113 (113)
T ss_pred             CCCHHHHHHHHHHCCCEEEEEEEC-CEEEEEEEHHHHHCC
T ss_conf             991999999999769259999999-999999997996469


No 40 
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44  E-value=1e-12  Score=103.24  Aligned_cols=117  Identities=20%  Similarity=0.239  Sum_probs=96.9

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCC-------------CCCCCCCCC
Q ss_conf             1299986301036778979865981799841886642241029999987662235643-------------223334576
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTN-------------NINLNIQLS  163 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~-------------~~~~~~~~~  163 (320)
                      .+++++..++|+.++++.+.+++++.+||.+++. .++|+++.+|++..+........             ........+
T Consensus         1 rdvvtv~~~~tl~ea~~~m~~~~~~~lpVvd~~~-~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (132)
T cd04636           1 KDVITVKKDDTLRDVVEILLTGKISGVPVVDNEG-RVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK   79 (132)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-CEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
T ss_conf             9987968919799999999972997899995999-399998889999998626762000000000000233310203899


Q ss_pred             HHHHC-CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             78851-56579717885123234320135651165407766204667588999
Q gi|254780426|r  164 ESNLI-KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       164 l~~~~-r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      +.++| ++++.+.++.++.+++..|.+++.|-.+|+|+ |.++||||..||+.
T Consensus        80 v~diMt~~~~tv~~~~~l~~a~~~m~~~~i~~lpVvd~-~~lvGiIt~~Dilr  131 (132)
T cd04636          80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             HHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHC
T ss_conf             99967899879999794999999999629878999989-99999999688234


No 41 
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44  E-value=1e-12  Score=103.16  Aligned_cols=111  Identities=14%  Similarity=0.226  Sum_probs=97.6

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECC
Q ss_conf             29998630103677897986598179984188664224102999998766223564322333457678851-56579717
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPS  176 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe  176 (320)
                      .++.++.++|+.|+.+.+.+++.+.+||++++. +++|+++-+|++.++......      ....+++++| ++++.+.+
T Consensus         2 rvitV~~~~ti~eA~~~M~~~~ig~l~Vvd~~g-~lvGIiTe~Di~r~~~~~~~~------~~~~~V~~vMt~~vitv~~   74 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHG-KLAGVLTKTDVVRQMGRCGGP------GCTAPVENVMTRAVVSCRP   74 (114)
T ss_pred             CEEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-EEEEEEEHHHHHHHHHHCCCC------CCCCCHHHHCCCCCEEECC
T ss_conf             312989869399999999874998899998999-599999949999998730798------6678999961589889999


Q ss_pred             CCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             885123234320135651165407766204667588999
Q gi|254780426|r  177 SMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       177 ~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      .+++.+++..|.+++.+-.+|+|+.|.++|+||..||+.
T Consensus        75 ~~~i~~a~~~M~~~~i~~lPVVD~~~~~vGiit~~Dilk  113 (114)
T cd04619          75 GDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHEEC
T ss_conf             890999999888769858899907995999999354542


No 42 
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44  E-value=5.7e-13  Score=104.86  Aligned_cols=116  Identities=15%  Similarity=0.245  Sum_probs=96.0

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCC-----------------------
Q ss_conf             129998630103677897986598179984188664224102999998766223564-----------------------
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKT-----------------------  153 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~-----------------------  153 (320)
                      .+++++..++++.++++.+.+++++++||.++  ++++|+++.+|++.++..+....                       
T Consensus         1 kdvvTv~~d~~l~ea~~~m~~~~i~~lPVvd~--~~lvGivT~~Dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (143)
T cd04634           1 KNPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE   78 (143)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEEEC--CEEEEEEEHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99889589398999999999749977999979--9999999869999887516755432356602332111232222667


Q ss_pred             --CCCCCCCCCCHHHHC-CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             --322333457678851-56579717885123234320135651165407766204667588999
Q gi|254780426|r  154 --NNINLNIQLSESNLI-KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       154 --~~~~~~~~~~l~~~~-r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                        .........++.++| ++++.+++++++.++.+.|.+++.+..+|+|+ |.++||||..|+++
T Consensus        79 ~~~~~~~~~~~~v~diM~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~-~~lvGIItr~Dilk  142 (143)
T cd04634          79 TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHHHCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHCCC
T ss_conf             77665432278989958889879989896999999999739888999989-99999999577308


No 43 
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43  E-value=8.8e-13  Score=103.62  Aligned_cols=112  Identities=18%  Similarity=0.180  Sum_probs=95.4

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC-CCEEECC
Q ss_conf             299986301036778979865981799841886642241029999987662235643223334576788515-6579717
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIK-NILFVPS  176 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r-~~~~Vpe  176 (320)
                      +++++..++|+.++++.+.+++++.+||.+++. +++|+++.+|++..+......     .....++.++|+ +++.+++
T Consensus         2 ~pvtv~~~~tl~~a~~~m~~~~~~~~pVvd~~~-~lvGiit~~Dll~~~~~~~~~-----~~~~~~v~~iM~~~~~tv~~   75 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNG-NLVGFLSEQDCLKQLLESSYH-----CDGVATVRDIMTTEVLTVSP   75 (114)
T ss_pred             CCEEECCCCCHHHHHHHHHHHCCCEEEEECCCC-EEEEEEEHHHHHHHHHHHHCC-----CCCCCEEHHHCCCCCEEEEC
T ss_conf             899979929999999999971997899994899-299999678999999775405-----88765918851468879957


Q ss_pred             CCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             8851232343201356511654077662046675889999
Q gi|254780426|r  177 SMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       177 ~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      ++++.+++..|.+++.+..+|+|+ |.++|+||..||+.+
T Consensus        76 ~~~~~~a~~~m~~~~~~~lpVvd~-g~lvGiIt~~DilrA  114 (114)
T cd04629          76 DDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLRA  114 (114)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHCC
T ss_conf             999999999988669839999989-999999997996339


No 44 
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43  E-value=1.1e-12  Score=102.94  Aligned_cols=111  Identities=23%  Similarity=0.308  Sum_probs=96.8

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECC
Q ss_conf             29998630103677897986598179984188664224102999998766223564322333457678851-56579717
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPS  176 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe  176 (320)
                      ++++++.++|+.++.+.|.+++.+++||.+++.+.++|+++.+|++..+......      ....++.++| ++++.+.+
T Consensus         2 dvitv~~~~tv~eA~~~M~~~~i~~v~V~~~~~~~~vGiiT~~Di~~~~~~~~~~------~~~~~V~~vMt~~v~tv~~   75 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRD------PDRVNVYEIMTKPLISVSP   75 (114)
T ss_pred             CEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEHHHHHHHHHCCCC------CCCCCHHHHCCCCEEEECC
T ss_conf             8499998293999999999829988999978996089999818989999846789------4444986827035499999


Q ss_pred             CCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             885123234320135651165407766204667588999
Q gi|254780426|r  177 SMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       177 ~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      .+++.+++..|.+++.+.++|+| .|.++|+||..||+.
T Consensus        76 d~~~~~a~~~m~~~~i~~lpVvd-~~~lvGiit~~Dil~  113 (114)
T cd04630          76 DMDIKYCARLMERTNIRRAPVVE-NNELIGIISLTDIFL  113 (114)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEEHHHHHC
T ss_conf             49499999999977972999999-999999997689647


No 45 
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43  E-value=5.4e-13  Score=105.01  Aligned_cols=105  Identities=23%  Similarity=0.259  Sum_probs=91.3

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf             129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP  175 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp  175 (320)
                      .+++++..++|++++++++.+++++.+||.+++. +++|+++.+|++...             ....+..+| ++++++.
T Consensus         1 kdvvtv~~~~tv~ea~~lm~~~~i~~lpVvd~~~-~lvGivT~~Dl~~~~-------------~~~~v~~iMt~~~~tv~   66 (106)
T cd04638           1 ENVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSG-ELVGIITRKDLLRNP-------------EEEQLALLMTRDPPTVS   66 (106)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEECCCC-EEEEEEEHHHHHHCC-------------CCCHHHHHHCCCCEECC
T ss_conf             9989999949699999999976999899993899-999998978964487-------------50244675358973679


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             78851232343201356511654077662046675889999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      +++++.++++.|.+++.+..+|+|+ |.++||||..||+.+
T Consensus        67 ~~~~~~~a~~~m~~~~i~~lpVvd~-~~lvGiIt~~DilkA  106 (106)
T cd04638          67 PDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVRA  106 (106)
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHCC
T ss_conf             9491999999998769759999999-999999997995359


No 46 
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine.  It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43  E-value=3.5e-13  Score=106.23  Aligned_cols=107  Identities=16%  Similarity=0.261  Sum_probs=95.0

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf             129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP  175 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp  175 (320)
                      .+++++..++++.++++.+.+++++++||.+++ ++++|+++.+|++..+....           ..+.++| +++++++
T Consensus         2 r~vvtv~~~~tv~~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~Di~~~~~~~~-----------~~v~~im~~~~~~~~   69 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDK-----------KSVEDIMTRNVITAT   69 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECHHHHHHHHCCC-----------CCHHHCEEECHHHHH
T ss_conf             899898993999999999997299889999799-91999996227888987079-----------763360430012014


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             7885123234320135651165407766204667588999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      +..++.++++.|++++.+..+|+|+.|.++|+||..||+.
T Consensus        70 ~~~~~~~a~~~m~~~~i~~lPVvD~~~~lvGiiT~~Di~k  109 (110)
T cd04605          70 PDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHCC
T ss_conf             6558999999999839619999918998999999377211


No 47 
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43  E-value=1.2e-12  Score=102.61  Aligned_cols=109  Identities=19%  Similarity=0.323  Sum_probs=95.2

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf             129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP  175 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp  175 (320)
                      +++.+++.++++.++++.+.+++++.+||++++. +++|+++.+|++.+.....        ....++.++| ++++++.
T Consensus         1 tdv~tv~~~~tl~eA~~~m~~~~~~~~~Vvd~~~-~l~GIiT~~Di~~~~~~~~--------~~~~~V~~iMt~~~itv~   71 (111)
T cd04626           1 TDFPTIDEDASIREALHEMLKYNTNEIIVKDNEE-KLKGVVTFTDILDLDLFES--------FLEKKVFNIVSQDVFYVN   71 (111)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEECCCC-EEEEEEEHHHHHHHHHCCC--------CCCCCHHHHCCCCCEEEC
T ss_conf             9973999629399999999984998899996999-7999999499999985268--------778888996069987999


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             7885123234320135651165407766204667588999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      ++.++.+++..|++++.+..+|+|+ |.++|+||..||++
T Consensus        72 ~~~~~~~a~~~M~~~~i~~LPVvd~-~klvGiit~~Dil~  110 (111)
T cd04626          72 EEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             CCCCHHHHHHHHHHHCCCEEEEEEC-CEEEEEEEHHHHCC
T ss_conf             9793999999999809988999999-99999999698148


No 48 
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43  E-value=9.3e-13  Score=103.44  Aligned_cols=112  Identities=15%  Similarity=0.224  Sum_probs=92.2

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-------C
Q ss_conf             129998630103677897986598179984188664224102999998766223564322333457678851-------5
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-------K  169 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-------r  169 (320)
                      .+++++.+++++.++++.+.++++|.+||.+++. +++|+++.+|++.....+.....      .......+       .
T Consensus         1 r~Vitv~pd~~l~da~~lm~~~~is~lPVVD~~g-~lvGiis~~Dl~~~~~~~~~~~~------~~~~~~~~~~~~~~~~   73 (120)
T cd04641           1 KNIATARPDTPLIDVLDMLVERRVSALPIVDENG-KVVDVYSRFDVINLAKEGAYNNL------DLTVGEALERRSQDFE   73 (120)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-CEEEEEEHHHHHHHHHCCCCCCC------CCCHHHHHHCCCCCCC
T ss_conf             9978989989999999999980986699987899-69899759999988751554434------4208776421555547


Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             6579717885123234320135651165407766204667588999
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      ++..+++++++.+++..|.+++.|..+||||.|.++|+||+.||+.
T Consensus        74 ~v~t~~~~~~l~~~~~~m~~~~i~rlpVVD~~~rlvGiIs~~Dilr  119 (120)
T cd04641          74 GVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf             8569899997999999999849857989989997999998688238


No 49 
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.42  E-value=1.9e-12  Score=101.37  Aligned_cols=109  Identities=17%  Similarity=0.229  Sum_probs=95.9

Q ss_pred             EEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECCC
Q ss_conf             9998630103677897986598179984188664224102999998766223564322333457678851-565797178
Q gi|254780426|r   99 INAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPSS  177 (320)
Q Consensus        99 i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe~  177 (320)
                      -.++..++++.++++.+.+++++.+||.+++. +++|+++.+|++.+......       ....++.++| +++.++.++
T Consensus         3 P~tv~~d~~l~~A~~~m~~~~~~~~pVvd~~~-~lvGivT~~Di~~~~~~~~~-------~~~~~v~~iMt~~~~ti~~~   74 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKK-RLVGIITRYDVLSYALESEE-------LKDAKVREVMNSPVITIDAN   74 (113)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-EEEEEEEHHHHHHHHHHCCC-------CCCCCHHHHCCCCCEEEECC
T ss_conf             95989969999999999973997899994899-79999995999999980798-------24589999275697899089


Q ss_pred             CCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             85123234320135651165407766204667588999
Q gi|254780426|r  178 MLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       178 ~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      +++.+++..|++++.+..+|+|+.|.++|+||..||+.
T Consensus        75 ~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dilr  112 (113)
T cd04615          75 DSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             CCHHHHHHHHHHHCCEEEEEECCCCEEEEEEEHHHHHC
T ss_conf             93999999999749948999979993999999688326


No 50 
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42  E-value=1.6e-12  Score=101.99  Aligned_cols=111  Identities=15%  Similarity=0.257  Sum_probs=96.7

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf             129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP  175 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp  175 (320)
                      ..++++.+++++.++.+.+.+++++.+||.+++  +++|+++-+|++..+......      ....+++++| +++..++
T Consensus         1 ~~V~Tv~pd~~l~eA~~~M~~~~i~~lvV~~~g--~lvGIiT~rDi~~~~~~~~~~------~~~~~V~~iMt~~~~tv~   72 (112)
T cd04625           1 DTIYTVAPETLLSEAVATMAEQDLGSLVVMERG--ELVGLLTFREVLQAMAQHGAG------VLDTTVRAIMNPEPIVAS   72 (112)
T ss_pred             CCEEEECCCCCHHHHHHHHHHCCCCEEEEEECC--EEEEEEEHHHHHHHHHHCCCC------CCCCCHHHHEECCCEEEC
T ss_conf             947998995979999999987499879995799--999999879999999970998------011708883348977998


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             78851232343201356511654077662046675889999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      +++++.++++.|.+++.+..+|+|+ |.++|+||..||+.+
T Consensus        73 ~~~~i~~a~~~M~~~~i~~lpVvd~-g~lvGiit~~Di~rA  112 (112)
T cd04625          73 PDDSIDEVRRLMVERHLRYLPVLDG-GTLLGVISFHDVAKA  112 (112)
T ss_pred             CCCHHHHHHHHHHHCCCEEEEEEEC-CEEEEEEEHHHHHCC
T ss_conf             9996999999768669769999999-999999997996359


No 51 
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.39  E-value=1.3e-12  Score=102.53  Aligned_cols=130  Identities=17%  Similarity=0.305  Sum_probs=116.8

Q ss_pred             HHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf             99873047757641312001299986301036778979865981799841886642241029999987662235643223
Q gi|254780426|r   78 FNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNIN  157 (320)
Q Consensus        78 i~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~  157 (320)
                      +..+..+.+.+|+++|++  .+.+++.++|+.++.+.+.++++.-.||.+++  +++|+++..|+..++.++..      
T Consensus       163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d--k~vGiit~~dI~~aia~g~~------  232 (294)
T COG2524         163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDDD--KIVGIITLSDIAKAIANGNL------  232 (294)
T ss_pred             EEEEEECCCCHHHHHCCC--CCEEECCCCCHHHHHHHHHHCCCCCCCEECCC--CEEEEEEHHHHHHHHHCCCC------
T ss_conf             743264573026662667--84676688639999999997286678510289--45899988999999976896------


Q ss_pred             CCCCCCHHHHCCC-CEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHH
Q ss_conf             3345767885156-57971788512323432013565116540776620466758899998742
Q gi|254780426|r  158 LNIQLSESNLIKN-ILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRD  220 (320)
Q Consensus       158 ~~~~~~l~~~~r~-~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGe  220 (320)
                         ...++++||+ ++.+.+++.++++++.|.+++....+|+|..|..+|++|..|||..|.|.
T Consensus       233 ---~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~~  293 (294)
T COG2524         233 ---DAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAGL  293 (294)
T ss_pred             ---CCCHHHHHCCCCCEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHCC
T ss_conf             ---5438887505770475730499999998763864699984699678788557888886436


No 52 
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.38  E-value=2.2e-12  Score=100.95  Aligned_cols=110  Identities=15%  Similarity=0.150  Sum_probs=94.0

Q ss_pred             EEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECCC
Q ss_conf             9998630103677897986598179984188664224102999998766223564322333457678851-565797178
Q gi|254780426|r   99 INAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPSS  177 (320)
Q Consensus        99 i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe~  177 (320)
                      ..++..++++.|+.+.+.+++++.+||.+++. .++|+++.+|++.++......       ....+.++| +++++++++
T Consensus         3 P~tV~~~~tv~ea~~~m~~~~~~~~pVvD~~g-~lvGIvT~~Dl~r~~~~~~~~-------~~~~v~~vmt~~~~tv~pd   74 (115)
T cd04593           3 PPVLSATTPLREAAEQLIESKHGSALVVDRDG-GVVGIITLPDLLRALEADEAG-------EPSAVDEVATPPLLTVHPD   74 (115)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-CEEEEEEHHHHHHHHHCCCCC-------CCCEEEEEECCCCEEECCC
T ss_conf             83889919999999999874998999994999-889998899999999738886-------6779454303896689999


Q ss_pred             CCHHHHHHHHHCCCCCCEEEEECC--CCCEEEEEHHHHHHH
Q ss_conf             851232343201356511654077--662046675889999
Q gi|254780426|r  178 MLVSDLLTNIQESRIRMALVIDEH--GGTDGLVSYEDIVSV  216 (320)
Q Consensus       178 ~~l~~lL~~m~~~~~~~aiVvDE~--G~~~GiVTleDIle~  216 (320)
                      .++.++++.|.+++.+...|+|+.  |.++|+||..||+.+
T Consensus        75 ~~l~~al~~M~~~~i~~LPVVd~~~~~~lvGiit~~Dil~A  115 (115)
T cd04593          75 EPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA  115 (115)
T ss_pred             CHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEHHHHHCC
T ss_conf             94999999999869988999978999989999997996569


No 53 
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38  E-value=1.5e-12  Score=102.15  Aligned_cols=107  Identities=22%  Similarity=0.381  Sum_probs=93.1

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf             129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP  175 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp  175 (320)
                      +.++++..++++.++.+.+.+++++.+||.+++  +++|+++.+|+...+..+.         .+.++.++| +++..+.
T Consensus         2 spV~ti~p~~tv~ea~~~m~~~~i~~lpVvd~~--~lvGivT~~Di~~~~~~~~---------~~~~v~~iM~~~~~tv~   70 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGG--RVVGIISRRDVEKALRHGL---------GHAPVKDYMSTDVVTVP   70 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEEECC--EEEEEEEHHHHHHHHHCCC---------CCCCCEEEEECCEEEEC
T ss_conf             898997995999999999997599889999899--9999997689887765376---------78812103253668866


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             7885123234320135651165407766204667588999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      +++++.+++..|.+++.+..+|+|+ |.++|+||..||+.
T Consensus        71 ~~~~i~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~Dilk  109 (110)
T cd04595          71 PDTPLSEVQELMVEHDIGRVPVVED-GRLVGIVTRTDLLR  109 (110)
T ss_pred             CCCCHHHHHHHHHHCCCEEEEEEEC-CEEEEEEEHHHEEC
T ss_conf             9993999999889749139999989-99999998415615


No 54 
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain.  Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.38  E-value=1.3e-12  Score=102.57  Aligned_cols=112  Identities=17%  Similarity=0.175  Sum_probs=93.5

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf             129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP  175 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp  175 (320)
                      ++.+++..++|+.++.+.+.+++++.+||.+++  +++|+++.+|++..+......      ....++.++| +++.+++
T Consensus         1 t~Pitv~p~~ti~ea~~~M~~~~i~~~~V~d~~--~l~GivT~~Dl~~~~~~~~~~------~~~~~v~~iMt~~~~tv~   72 (113)
T cd04587           1 TKPATVSPTTTVQEAAKLMREKRVSCVLVMDGN--KLVGIFTSKDIALRVVAQGLD------PESTLVERVMTPNPVCAT   72 (113)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEEECC--EEEEEEEEHHHHHHHHHCCCC------HHHCEEEEEECCCCEEEE
T ss_conf             989898994999999999997299889999899--999999845987899873998------320898866616846990


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             78851232343201356511654077662046675889999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      ++.++.+++..|.+++.+-.+|+|+.|.++|+||..||+.+
T Consensus        73 ~~~~l~~a~~~m~~~~i~~lpVvd~~~~~vGiit~~Dil~A  113 (113)
T cd04587          73 SDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTHA  113 (113)
T ss_pred             CCCCHHHHHHHHHHCCCEEEEEEECCCEEEEEEEHHHHHCC
T ss_conf             79999999999987794199999269989999984885278


No 55 
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown.  In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.38  E-value=1.1e-12  Score=102.85  Aligned_cols=107  Identities=16%  Similarity=0.212  Sum_probs=93.2

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf             129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP  175 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp  175 (320)
                      .+++++..++++.++++.+.+++++.+||++++. .++|+++.+|+.....            ...++.++| +++..+.
T Consensus         2 r~pitv~~~~tv~eal~~m~~~~~~~l~Vvd~~~-~lvGivt~~di~~~~~------------~~~~v~~im~~~~~tv~   68 (109)
T cd04583           2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDN-KLLGIVSLESLEQAYK------------EAKSLEDIMLEDVFTVQ   68 (109)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEEECCC-EEEEEEEHHHHHHCCC------------CCCEEEECCEEEEEEEC
T ss_conf             9899979939799999999973997899995899-8999998104343005------------89678751262028974


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             78851232343201356511654077662046675889999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      +++++.++++.|.+++.+..+|+|+.|.++|+||..||+++
T Consensus        69 ~~~~~~~a~~~m~~~~~~~lPVVd~~~~lvGiiT~~dll~t  109 (109)
T cd04583          69 PDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVDT  109 (109)
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf             89999999999985598388899649999999996882376


No 56 
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37  E-value=1.9e-12  Score=101.46  Aligned_cols=103  Identities=16%  Similarity=0.190  Sum_probs=90.3

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECC
Q ss_conf             29998630103677897986598179984188664224102999998766223564322333457678851-56579717
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPS  176 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe  176 (320)
                      +++++..++|+.++.+.|.+++++.+||.+++  +++|+++.+|+..+             .....+.++| ++++++++
T Consensus         2 d~vtv~p~~tv~ea~~lM~~~~i~~lpVv~~~--~lvGivT~~Dl~~~-------------~~~~~v~~iMt~~~itv~~   66 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDG--KLVGIITSRDVRRA-------------HPNRLVADAMTREVVTISP   66 (105)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEEECC--EEEEEEECHHHHCC-------------CCCCCHHHHCCCCCEEECC
T ss_conf             98996894989999999986399889999999--99899981053127-------------8887968850279899979


Q ss_pred             CCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             8851232343201356511654077662046675889999
Q gi|254780426|r  177 SMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       177 ~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      ++++.++++.|.+++.+..+|+|+ |.++|+||..||..|
T Consensus        67 ~~~l~~a~~~M~~~~i~~lpVvd~-g~lvGiiT~~Divre  105 (105)
T cd04599          67 EASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIALE  105 (105)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEECHHHCCC
T ss_conf             491999999779859979999989-999999994586158


No 57 
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50.  CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37  E-value=3.8e-12  Score=99.42  Aligned_cols=108  Identities=16%  Similarity=0.222  Sum_probs=91.5

Q ss_pred             EEEEEEECCCHHHHHHH-HHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC---CCCEE
Q ss_conf             29998630103677897-986598179984188664224102999998766223564322333457678851---56579
Q gi|254780426|r   98 SINAVEDKATVYEAMLM-FEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI---KNILF  173 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~-i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~---r~~~~  173 (320)
                      ++.+++.++|+.|+.+. +..+++++|||.+++. .++|+++..|+........         ....+.+++   +....
T Consensus         2 dv~tv~~~~tl~e~~~~~~~~~~~~~~pVvd~~g-~l~Givt~~dl~~~~~~~~---------~~~~v~~v~~~~~~~~~   71 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEG-RYVGIISLADLRAIPTSQW---------AQTTVIQVMTPAAKLVT   71 (114)
T ss_pred             CCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCC-EEEEEEEHHHHHHHHHHCC---------CCCCHHHHCCCCCCCEE
T ss_conf             9558499995999999998507966899987899-7999999999875454025---------68847782102778758


Q ss_pred             ECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             717885123234320135651165407766204667588999
Q gi|254780426|r  174 VPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       174 Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      +.+++++.++++.|.+++.+..+|||+.|.++|+||..||+.
T Consensus        72 v~~~~~l~~al~~m~~~~~~~LpVVd~~g~lvGiit~~Dilr  113 (114)
T cd04801          72 VLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             ECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf             999997999999999769867889947990999999788436


No 58 
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein.  IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.36  E-value=2.6e-12  Score=100.58  Aligned_cols=107  Identities=19%  Similarity=0.265  Sum_probs=89.1

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCC--CCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCC---C
Q ss_conf             129998630103677897986598179984188--66422410299999876622356432233345767885156---5
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNS--LDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKN---I  171 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~--~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r~---~  171 (320)
                      ++.+++..++|+.++++++.+++|+++||.++.  ...++|+++.+|+...            .....++.++|.+   +
T Consensus         2 ~dPvtv~p~~tv~ea~~lm~~~~~~~~pVvd~g~~~~klvGIvT~rDi~~~------------~~~~~~v~~iMt~~~~~   69 (114)
T cd04602           2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL------------TDSETPLSEVMTPREVL   69 (114)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEHHHHHHC------------CCCCCCCCCEEECCCEE
T ss_conf             889997998999999999997198779999657768969999997895235------------07676563516527668


Q ss_pred             EEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             79717885123234320135651165407766204667588999
Q gi|254780426|r  172 LFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       172 ~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      +..+++.++.++++.|.+++.+..+||||.|.++||||..||+.
T Consensus        70 i~~~~~~~l~ea~~~m~~~~i~~LPVVd~~g~LvGiIT~~Di~k  113 (114)
T cd04602          70 VVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             EEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEECHHHCC
T ss_conf             99479878999999999749667819978996999999244036


No 59 
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown.  In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.36  E-value=5.5e-12  Score=98.42  Aligned_cols=104  Identities=14%  Similarity=0.102  Sum_probs=91.2

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf             129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP  175 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp  175 (320)
                      ++.+++..++++.++++.+.+++++.+||++++. +++|+++.+|+....              .....++| +.+..++
T Consensus         1 t~pvtv~pd~~l~eA~~lm~~~~~~~l~VVd~~g-~l~Givt~~Dl~~~~--------------~~~v~d~m~~~~~tv~   65 (106)
T cd04582           1 TEPITVRPDDPLSDALGLMDDSDLRALTVVDADG-QPLGFVTRREAARAS--------------GGCCGDHAEPFKVTVS   65 (106)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-CEEEEEEHHHHHHHC--------------CCCHHHCCCCCCEEEC
T ss_conf             9983899989399999999973998799997999-789998999987630--------------8953451025766997


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             7885123234320135651165407766204667588999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      .+.++.++++.|.+++.+...|||+.|.++|+||..||+.
T Consensus        66 ~d~~l~~a~~~M~~~~i~~lPVVD~~grlvGivT~~Di~~  105 (106)
T cd04582          66 VDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf             9999999999999729876258989990999998688425


No 60 
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.36  E-value=6.7e-12  Score=97.85  Aligned_cols=110  Identities=19%  Similarity=0.213  Sum_probs=93.5

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECC
Q ss_conf             29998630103677897986598179984188664224102999998766223564322333457678851-56579717
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPS  176 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe  176 (320)
                      +.+++..++|+.++++.|.+++.+.+||.+++. +++|+++-+|+++.+..+..       ....++.++| +++.++.+
T Consensus         2 ~pitv~pd~tv~ea~~~M~~~~~~~~~vV~~~~-~lvGIvT~~Di~r~~~~~~~-------~~~~~v~~vMt~~~itv~~   73 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKG-RLLGIFTERDIVRLTAIGKD-------LSDLPIGEVMTQPVVTLQE   73 (115)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-EEEEEEEHHHHHHHHHCCCC-------CCCCCHHHHCCCCCEEECC
T ss_conf             699969919999999999983994699993799-29999986999999985998-------1348988963689679838


Q ss_pred             CC--CHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             88--5123234320135651165407766204667588999
Q gi|254780426|r  177 SM--LVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       177 ~~--~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      +.  .+.+++..|.+++.+-.+|+|+.|.++|+||..||+.
T Consensus        74 ~~~~~i~~a~~~M~~~~i~~lpVvd~~g~lvGiit~~Dilk  114 (115)
T cd04620          74 SEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             CCCCCHHHHHHHHHHCCEEEEEEECCCCEEEEEEEHHHCCC
T ss_conf             99726999999987559528999957997999999256232


No 61 
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain.  Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.34  E-value=1.4e-11  Score=95.81  Aligned_cols=108  Identities=15%  Similarity=0.181  Sum_probs=94.3

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECC
Q ss_conf             29998630103677897986598179984188664224102999998766223564322333457678851-56579717
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPS  176 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe  176 (320)
                      .+++++.++|+.++.+.+.+++.+.+||.+++  +.+|+++-+|+..++..+..       ....++.++| +++.++++
T Consensus         2 ~pvtv~~~~ti~ea~~~M~~~~i~~~vV~~~~--~~~GIvT~~Dl~~~~~~~~~-------~~~~~V~~vms~~~~ti~~   72 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDGD--PRLGIVTRTDLLDAVLLDGL-------PSSTPVGEIATFPLITVDP   72 (111)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEEECC--EEEEEEEHHHHHHHHHCCCC-------CCCCCHHHHCCCCCEEECC
T ss_conf             99899992989999999997099889997699--27999997998999982999-------6788999928799989999


Q ss_pred             CCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             885123234320135651165407766204667588999
Q gi|254780426|r  177 SMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       177 ~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      ++++.+++..|.+++.+..+|+|+ |.++|+||..|||.
T Consensus        73 ~~~~~~a~~~M~~~~i~~lpV~d~-~~~vGivt~~Dil~  110 (111)
T cd04589          73 DDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             CCCHHHHHHHHHHCCCEEEEEEEC-CEEEEEEEHHHHHC
T ss_conf             792999999999879808899989-99999999688228


No 62 
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33  E-value=9.6e-12  Score=96.82  Aligned_cols=108  Identities=19%  Similarity=0.314  Sum_probs=93.9

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECC
Q ss_conf             29998630103677897986598179984188664224102999998766223564322333457678851-56579717
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPS  176 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe  176 (320)
                      ++++++.++|+.++.+.+.+++++.+||.+++  +++|+++.+|++..+.....      .....++.++| +++.++++
T Consensus         2 ~vvti~~~~tl~~a~~~m~~~~i~~l~V~d~~--~~vGivt~~Di~~~~~~~~~------~~~~~~v~~iM~~~~~tv~~   73 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNE--KPVGIITERDLVKKVVSRNL------KPREVPVGEVMSTPLITIDP   73 (112)
T ss_pred             CCEEECCCCCHHHHHHHHHHHCCCEEEEEECC--EEEEEEEECHHHHHHHHCCC------CCCCCCHHHHHCCCCEEECC
T ss_conf             97896891989999999997499879999899--99999982187888875479------81238999972348559947


Q ss_pred             CCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHH
Q ss_conf             88512323432013565116540776620466758899
Q gi|254780426|r  177 SMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIV  214 (320)
Q Consensus       177 ~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIl  214 (320)
                      ++++.++++.|.+++.+..+|+|+ |.+.|+||..||+
T Consensus        74 ~~~l~~a~~~m~~~~~~~lpVvd~-~~lvGiIt~~Dil  110 (112)
T cd04802          74 NASLNEAAKLMAKHGIKRLPVVDD-DELVGIVTTTDIV  110 (112)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEEC-CEEEEEEECHHHC
T ss_conf             986999999878719858999989-9999999806710


No 63 
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream.  CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32  E-value=1.1e-11  Score=96.52  Aligned_cols=107  Identities=20%  Similarity=0.252  Sum_probs=95.2

Q ss_pred             EEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECCCC
Q ss_conf             998630103677897986598179984188664224102999998766223564322333457678851-5657971788
Q gi|254780426|r  100 NAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPSSM  178 (320)
Q Consensus       100 ~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe~~  178 (320)
                      +++..++|+.++++.+.++++..+||.+++. .++|+++-+|+.+++..+..        .+.++.++| +++.++.++.
T Consensus         5 i~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~-~l~GiiT~~Di~r~l~~~~~--------~~~~v~~im~~~~~~i~~~~   75 (113)
T cd04607           5 LLVSPDASILDALRKIDKNALRIVLVVDENG-RLLGTVTDGDIRRALLKGLS--------LDDPVSEVMNRNPITAKVGS   75 (113)
T ss_pred             EEECCCCCHHHHHHHHHHCCCCEEEEECCCC-EEEEEEECHHHHHHHHCCCC--------CCCCHHHHHCCEEEEEECCC
T ss_conf             8969949899999999875997899997999-59999987277668762898--------45615675212129998799


Q ss_pred             CHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             5123234320135651165407766204667588999
Q gi|254780426|r  179 LVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       179 ~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      ++.+++..|.+.+.+..+|+|+.|.++|++|..||+.
T Consensus        76 ~~~~a~~~m~~~~i~~lPVvd~~~~lvGiit~~Dll~  112 (113)
T cd04607          76 SREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             CHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf             8999999998779749999978994999999799308


No 64 
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain.  Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.30  E-value=1.1e-11  Score=96.38  Aligned_cols=108  Identities=19%  Similarity=0.211  Sum_probs=93.4

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECC
Q ss_conf             29998630103677897986598179984188664224102999998766223564322333457678851-56579717
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPS  176 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe  176 (320)
                      ++++++.++|+.++.+.+.+++++.+||.++  ++++|+++.+|++..+.....       ..+.++.++| +++.++++
T Consensus         2 ~~vtv~~~~tv~ea~~~m~~~~i~~v~V~~~--~~~vGiit~~Di~~~~~~~~~-------~~~~~v~~im~~~~~tv~~   72 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGL-------DPDTPVSEVMTAPPITIPP   72 (111)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEECHHHHHHHHCCC-------CCCCCHHHHCCCCCEEEEC
T ss_conf             9989789197999999999729998999989--999999995578899871679-------8566588851268179988


Q ss_pred             CCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             885123234320135651165407766204667588999
Q gi|254780426|r  177 SMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       177 ~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      ++++.+++..|.+++.+..+|+|+ |.+.|+||..||+.
T Consensus        73 ~~~l~~a~~~m~~~~i~~lpVvd~-~~lvGiit~~Dilk  110 (111)
T cd04800          73 DATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHEEC
T ss_conf             991999999998539958999989-99999998545736


No 65 
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE.  MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29  E-value=1.3e-11  Score=96.04  Aligned_cols=102  Identities=19%  Similarity=0.302  Sum_probs=88.8

Q ss_pred             EEECCCHHHHHHHHHHCC-----CCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC-CCEEEC
Q ss_conf             863010367789798659-----81799841886642241029999987662235643223334576788515-657971
Q gi|254780426|r  102 VEDKATVYEAMLMFEKYG-----RSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIK-NILFVP  175 (320)
Q Consensus       102 i~~~~~~~e~~~~i~~~~-----~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r-~~~~Vp  175 (320)
                      +..+.|++++++.++++.     .+.+||++++. +.+|+++.+|++..             .++.++.++|+ ++.+++
T Consensus         2 ~~~~~TV~eai~~lr~~~~~~~~~~~i~Vvd~~~-~l~G~vt~~dll~~-------------~~~~~v~~iM~~~~~~v~   67 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEG-RLLGVVSLRDLLLA-------------DPDTPVSDIMDTDVISVS   67 (109)
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCC-EEEEEEEHHHHHHC-------------CCCCCHHHHHCCCEEECC
T ss_conf             6998899999999985188856177999997999-79999986772241-------------888716663002136337


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHH
Q ss_conf             788512323432013565116540776620466758899998
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVL  217 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~i  217 (320)
                      +++++.++++.|.+++.+.++|||+.|.+.|+||..|+++.+
T Consensus        68 ~~~~~~~a~~~m~~~~~~~lPVVd~~~~lvGiIt~~Di~~~~  109 (109)
T cd04606          68 ADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDVI  109 (109)
T ss_pred             CCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEEEHHHHHHHC
T ss_conf             999899999999985276046898899799999968968449


No 66 
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.26  E-value=4.8e-11  Score=92.26  Aligned_cols=124  Identities=15%  Similarity=0.214  Sum_probs=105.2

Q ss_pred             CCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             47757641312001299986301036778979865981799841886642241029999987662235643223334576
Q gi|254780426|r   84 FRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLS  163 (320)
Q Consensus        84 l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~  163 (320)
                      +...+|+|+|.+  +...++.++++.|+.+.+.+++|+.+||.+++. ..+|+++.+|+...+.+..       ......
T Consensus       453 l~~~~v~dvm~~--~~~~v~~~~~l~e~~~~~~~~~~~~~~Vvd~~g-~l~Giv~l~dl~~~~~~~~-------~~~~~~  522 (583)
T PRK01862        453 LRTTQMRELIQP--AQTVVPLTASVADMTRVFLEYPVKYLYVTDDDG-RFRGAVALKDITSDLLDKR-------DTTDKT  522 (583)
T ss_pred             HHHCCHHHHCCC--CCCEECCCCCHHHHHHHHHHCCCEEEEEECCCC-EEEEEEEHHHHHHHHHCCC-------CCCCCC
T ss_conf             850809996387--882349999899999999847970799988999-7999978999887751635-------556460


Q ss_pred             HHHHCC-CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCC--CCEEEEEHHHHHHHH
Q ss_conf             788515-657971788512323432013565116540776--620466758899998
Q gi|254780426|r  164 ESNLIK-NILFVPSSMLVSDLLTNIQESRIRMALVIDEHG--GTDGLVSYEDIVSVL  217 (320)
Q Consensus       164 l~~~~r-~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G--~~~GiVTleDIle~i  217 (320)
                      ..++++ ++.++.+++++.++++.|.+.......|||+.+  .++|+||..|++.+-
T Consensus       523 ~~~~~~~~~~~l~~~~sL~~al~~f~~~~~~~LPVVd~~~~~~lvGiit~~dil~aY  579 (583)
T PRK01862        523 AADYAHTPFPLLTPDMPLRDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY  579 (583)
T ss_pred             HHHHHCCCCCEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEHHHHHHHH
T ss_conf             999817999578899989999999996699877899559998799997789999999


No 67 
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.25  E-value=4.2e-11  Score=92.60  Aligned_cols=108  Identities=14%  Similarity=0.135  Sum_probs=93.8

Q ss_pred             EEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC---CCEEEC
Q ss_conf             99986301036778979865981799841886642241029999987662235643223334576788515---657971
Q gi|254780426|r   99 INAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIK---NILFVP  175 (320)
Q Consensus        99 i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r---~~~~Vp  175 (320)
                      .+++..++++.+|.+.+.+++++.+||.+++. .++|+++-+|+++.+..+..       ....++.++|.   .+.++.
T Consensus         3 Pvtv~~~~si~eA~~~M~~~~ig~l~VVD~~~-~LvGIiT~rDl~r~~~~~~~-------~~~~pV~~iMT~~P~vvt~~   74 (118)
T cd04617           3 PVVVRENTSVYDAIVTLFLEDVGSLFVVDEDG-DLVGVVSRKDLLKASIGGAD-------LQKVPVGVIMTRMPNITTTT   74 (118)
T ss_pred             CEEECCCCCHHHHHHHHHHHCCCEEEEECCCC-CEEEEEEHHHHHHHHHCCCC-------CCCCCHHHHHCCCCCEEEEC
T ss_conf             97989969999999999983998799984999-59999878999999974898-------46782999857799719978


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCC---CCEEEEEHHHHH
Q ss_conf             788512323432013565116540776---620466758899
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHG---GTDGLVSYEDIV  214 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G---~~~GiVTleDIl  214 (320)
                      ++.++.++++.|.+++.+-..|||+.|   .++|+||..||+
T Consensus        75 pd~~v~~A~~~M~~~~i~~LPVVd~~~~~~~vvGiIT~~Di~  116 (118)
T cd04617          75 PEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNIT  116 (118)
T ss_pred             CCCCHHHHHHHHHHCCCCEECEEECCCCCEEEEEEEECCCEE
T ss_conf             999399999999982999856794399740899999775150


No 68 
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24  E-value=5.2e-11  Score=92.01  Aligned_cols=108  Identities=19%  Similarity=0.246  Sum_probs=92.6

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECC
Q ss_conf             29998630103677897986598179984188664224102999998766223564322333457678851-56579717
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPS  176 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe  176 (320)
                      +-++++.+.|+.++++.+.+.+++.+||++++. .++|+++..|++.......         ......++| .++..+.+
T Consensus         2 ~pvtv~~~~~L~~a~~~~~e~~~~~i~VVD~~~-k~vG~it~~Dll~~~~~~~---------~~~~V~d~m~~~v~~i~~   71 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEEN-KVLGQVTLSDLLEIGPNDY---------ETLKVCEVYIVPVPIVYC   71 (111)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-CEEEEEEHHHHHHHCHHHH---------HCCCHHHHHCCCCCCCCC
T ss_conf             446865999599999999876997689988999-6889988999864384455---------324387751567746389


Q ss_pred             CCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             885123234320135651165407766204667588999
Q gi|254780426|r  177 SMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       177 ~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      +.++.++++.|++.+.+...|||..|.+.|+||-.|||.
T Consensus        72 ~~~v~dalr~~~~~~~~~l~VVD~~grlvGiI~~rdlLr  110 (111)
T cd04603          72 DSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHC
T ss_conf             976899999987449988999938997999996255123


No 69 
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.22  E-value=2.4e-11  Score=94.18  Aligned_cols=94  Identities=18%  Similarity=0.288  Sum_probs=86.9

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCEEECCC
Q ss_conf             29998630103677897986598179984188664224102999998766223564322333457678851565797178
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVPSS  177 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r~~~~Vpe~  177 (320)
                      +++++..++++.++.+.+.+++++.+||++++. .++|+++-+|++.                       ..++++++++
T Consensus         2 dv~tv~~~~~v~~a~~~m~~~~i~~lpVvd~~g-~lvGIiT~rDli~-----------------------~~~~itv~~~   57 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDG-KLSGIITERDLIA-----------------------KSEVVTATKR   57 (96)
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCC-EEEEEEECHHHCC-----------------------CCCCEEECCC
T ss_conf             963908969899999999972998799998999-4999998888825-----------------------7788797998


Q ss_pred             CCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             85123234320135651165407766204667588999
Q gi|254780426|r  178 MLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       178 ~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      +++.++.+.|.+++.+..+|+|+.|.++||||..||+.
T Consensus        58 ~~v~eaa~lM~~~~I~~LPVvd~~~~lvGiit~~Dllk   95 (96)
T cd04614          58 TTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             CCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHCCC
T ss_conf             90999999999859988628989991999988798048


No 70 
>PRK07107 inositol-5-monophosphate dehydrogenase; Validated
Probab=99.22  E-value=6.5e-11  Score=91.36  Aligned_cols=166  Identities=14%  Similarity=0.156  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHCCC--CC-----HHHHHHHHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEEC
Q ss_conf             999999997997689--89-----89999999873047757641312001299986301036778979865981799841
Q gi|254780426|r   55 KGIRLPRIDASLEGI--FS-----ETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYK  127 (320)
Q Consensus        55 eel~~l~~~~~~~G~--i~-----~~E~~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~  127 (320)
                      -|-++-+..+.+.|.  |.     +++.++++.+=++..--+.       +-+++.+++++.++++++.+++||-+||.+
T Consensus        63 TE~~MAIamA~~GGiGVIH~Nmsie~Qa~~V~~VKr~esg~I~-------dPvti~p~~Tv~da~~l~~k~~~sg~PVvd  135 (497)
T PRK07107         63 SDDNMAIALAREGGLSFIFGSQSIESEAAMVRRVKNHKAGFVI-------SDSNLTPDNTLADVLDLKERTGHSTIAVTE  135 (497)
T ss_pred             CCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCC-------CCCCCCCCCCHHHHHHHHHHCCCCEEEEEE
T ss_conf             5099999999779979987999999999999999563567668-------981758986499999988871996234510


Q ss_pred             CC--CCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC---CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf             88--6642241029999987662235643223334576788515---657971788512323432013565116540776
Q gi|254780426|r  128 NS--LDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIK---NILFVPSSMLVSDLLTNIQESRIRMALVIDEHG  202 (320)
Q Consensus       128 ~~--~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r---~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G  202 (320)
                      +.  ..+++|+|+-+|+-..           ......++.++|.   .++++|+..++.++...|++++...++|||+.|
T Consensus       136 ~g~~~gkLvGIvT~RD~rf~-----------~~~~~~~V~~vMT~~~~Lvt~~~g~sl~eA~~lL~~~kiekLpvVd~~g  204 (497)
T PRK07107        136 DGTANGKLLGIVTSRDYRVS-----------RMSLDTKVKDFMTPFEKLVVAKVGITLKEANNIIWDHKLNTLPIIDKNQ  204 (497)
T ss_pred             CCCCCCEEEEEEECCEEECC-----------CCCCCCCHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCEEEECCCC
T ss_conf             37859879999846401111-----------3677776656406765427846889999999999863444302783799


Q ss_pred             CCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCCH
Q ss_conf             6204667588999987422210000000012467733783045359
Q gi|254780426|r  203 GTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDL  248 (320)
Q Consensus       203 ~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~l  248 (320)
                      .+.|++|..||....      ++    +...+-..|.++|-+.+..
T Consensus       205 ~L~gLiT~kDi~k~~------~~----P~a~~D~~grL~VgAAIg~  240 (497)
T PRK07107        205 HLVYMVFRKDYDSHK------EN----PLELLDSSKRYVVGAGINT  240 (497)
T ss_pred             CEEEEEEHHHHHHHH------HC----CCCCCCCCCCEEEEEECCC
T ss_conf             589999837888864------39----6311376788889996377


No 71 
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.18  E-value=1.6e-10  Score=88.79  Aligned_cols=100  Identities=15%  Similarity=0.232  Sum_probs=87.9

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCC--CCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEE
Q ss_conf             1299986301036778979865981799841886--64224102999998766223564322333457678851-56579
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSL--DNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILF  173 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~--d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~  173 (320)
                      ..++.+..+.+++++.+.+.+++|+.|||.++..  ..++|++..+|+...+.                  .+| +.|+.
T Consensus         2 ~~vv~~~~~~tv~~~~~ll~~~~~~g~PVv~~~~~~~~lvG~i~~~dl~~~l~------------------~~m~~~p~t   63 (105)
T cd04591           2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALK------------------NYIDPSPFT   63 (105)
T ss_pred             CCEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEHHHHHHHHH------------------HHCCCCCEE
T ss_conf             96899389989999999999779975858836887888999999999999999------------------758799839


Q ss_pred             ECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             717885123234320135651165407766204667588999
Q gi|254780426|r  174 VPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       174 Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      +++++++.++++.|++.+.+..+|+| .|.++|+||..|++.
T Consensus        64 v~~~~~l~~~~~lf~~~g~r~l~Vv~-~g~lvGiITr~Dl~~  104 (105)
T cd04591          64 VSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             ECCCCCHHHHHHHHHHHCCCEEEEEE-CCEEEEEEEHHHHHC
T ss_conf             89999599999999994995889957-999999999899534


No 72 
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.18  E-value=3.6e-10  Score=86.51  Aligned_cols=135  Identities=16%  Similarity=0.262  Sum_probs=116.7

Q ss_pred             CCCCHHHHHHHHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCC---CEEEEE--CCCCCCCCCCEEHHHH
Q ss_conf             89898999999987304775764131200129998630103677897986598---179984--1886642241029999
Q gi|254780426|r   68 GIFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGR---SWMPVY--KNSLDNPRGMVHMRDV  142 (320)
Q Consensus        68 G~i~~~E~~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~---sR~PV~--~~~~d~iiGiv~~kDl  142 (320)
                      ..++++++..++..+...+-+|..+|+  ++.+++..+.|+++++..+++.+.   +++.+|  +.+. .+.|++..+++
T Consensus       113 ~~l~~~~r~~v~~~l~y~e~taG~~Mt--~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~-~L~Gvvsl~~L  189 (451)
T COG2239         113 SLLDPEERARVRQLLSYPEDTAGRIMT--TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKG-KLLGVVSLRDL  189 (451)
T ss_pred             HHCCHHHHHHHHHHCCCCHHHHHCCCE--EEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCC-CEEEEEEHHHH
T ss_conf             818999999999865898344200013--025872067589999999997236756623799987766-46777569998


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCHHHHCCC-CEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHH
Q ss_conf             9876622356432233345767885156-579717885123234320135651165407766204667588999987
Q gi|254780426|r  143 ISYISHMYAKTNNINLNIQLSESNLIKN-ILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLM  218 (320)
Q Consensus       143 l~~~~~~~~~~~~~~~~~~~~l~~~~r~-~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~iv  218 (320)
                      +..             .+...+.++|.+ +.+|+..+...++-+.|++...-.+.|||+.|..+|+||.+|+++.+-
T Consensus       190 l~a-------------~~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~  253 (451)
T COG2239         190 LTA-------------EPDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIE  253 (451)
T ss_pred             HCC-------------CCHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCEECCEECCCCCEEEEEEHHHHHHHHH
T ss_conf             648-------------9576899872435624365578799999999828701535778984632554999999999


No 73 
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.13  E-value=3.5e-10  Score=86.62  Aligned_cols=112  Identities=17%  Similarity=0.265  Sum_probs=92.0

Q ss_pred             EEEEEEECCCHHHHHHHHHHC-CCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCC-CEEEC
Q ss_conf             299986301036778979865-9817998418866422410299999876622356432233345767885156-57971
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKY-GRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKN-ILFVP  175 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~-~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r~-~~~Vp  175 (320)
                      .+.++..++++.++.+.+.++ ..+.+||++++  .++|+++-+|++..+...+..    +.....++.++|.+ ++.|.
T Consensus         2 pv~tv~pd~t~~ev~~~f~~~~~i~~lpVvd~~--r~vGiisr~dl~~~~~~~~g~----~l~~~~pV~~~M~~~p~~v~   75 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDG--RPVGLIMREALMELLSTPYGR----ALYGKKPVSEVMDPDPLIVE   75 (119)
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECC--EEEEEEEHHHHHHHHCCCCCH----HHHCCCCHHHHCCCCCEEEC
T ss_conf             985749998499999999878996768998799--889999899999987074322----33038958997168987998


Q ss_pred             CCCCHHHHHHHHHCCCCCCE---EEEECCCCCEEEEEHHHHHH
Q ss_conf             78851232343201356511---65407766204667588999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMA---LVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~a---iVvDE~G~~~GiVTleDIle  215 (320)
                      +++++.++.+.|.++..+..   +||+|.|...||+|..|++.
T Consensus        76 ~~~~i~~~~~~~~~~~~~~l~~~ivV~~~g~~~Givt~~DLlr  118 (119)
T cd04598          76 ADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             CCCCHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEHHHHHC
T ss_conf             9896999999998569332578858957998999989899407


No 74 
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.11  E-value=1.2e-10  Score=89.74  Aligned_cols=121  Identities=19%  Similarity=0.228  Sum_probs=104.5

Q ss_pred             EEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf             57641312001299986301036778979865981799841886642241029999987662235643223334576788
Q gi|254780426|r   87 IRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESN  166 (320)
Q Consensus        87 ~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~  166 (320)
                      .+|+|+|.+-.++..++.++++.+++..+.+.++--.-|.+++. .++|+++--||-+.+.+...      .  +.++.+
T Consensus       197 ~~V~dlM~~~~~lP~v~~~~~l~dai~~ms~k~lG~v~Vvd~~~-kL~GIITDGDLRR~l~k~~~------L--~~~v~~  267 (321)
T PRK11543        197 NKVHHLMRRGDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQ-QVKGVFTDGDLRRWLVGGGA------L--TTPVNE  267 (321)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCC-CEEEEEECHHHHHHHHCCCC------H--HHHHHH
T ss_conf             99999973355789899998799999996648861799833775-06888744389999863785------6--768999


Q ss_pred             HC-CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             51-565797178851232343201356511654077662046675889999
Q gi|254780426|r  167 LI-KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       167 ~~-r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      +| +.|.++.+++.+.++++.|++++..-.+|+|+.|.++|+|.+.|++.+
T Consensus       268 vMT~nP~tI~~d~la~eAl~iM~~~kI~~LpVvd~~~k~vGiIhiHDLl~~  318 (321)
T PRK11543        268 AMTVGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             HHCCCCCEECCCCHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHC
T ss_conf             848999578998719999999998798689998589959999638978676


No 75 
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.11  E-value=3.8e-10  Score=86.33  Aligned_cols=109  Identities=19%  Similarity=0.229  Sum_probs=86.4

Q ss_pred             EEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHH-----HHHHCCCCCCCCCCCCCCCHHHHCCCCEE
Q ss_conf             9998630103677897986598179984188664224102999998-----76622356432233345767885156579
Q gi|254780426|r   99 INAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVIS-----YISHMYAKTNNINLNIQLSESNLIKNILF  173 (320)
Q Consensus        99 i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~-----~~~~~~~~~~~~~~~~~~~l~~~~r~~~~  173 (320)
                      -+++++++|+.++++.+.+++.+.+||.+++. +++|+++.+||+.     .......      ...+..+.++|+|...
T Consensus         3 Pvtv~~dtti~eA~~~M~~~~v~~l~VvD~~~-~lvGIiT~~Dl~~~~~~~~~~~~~~------~~~~l~V~dvMt~~~~   75 (126)
T cd04640           3 PIVIPADTSIDEALELMIKHGVRLLLVVDSDD-NFIGVITAVDLLGEEPIKRIQEGGI------SRSELTVADVMTPKED   75 (126)
T ss_pred             CEEECCCCCHHHHHHHHHHHCCCEEEEECCCC-CEEEEEECCCCCCCHHHHHHHHCCC------CHHHCCHHHCCCCCCC
T ss_conf             96968999599999999983976798987999-7999997630012156888864489------8255053133554520


Q ss_pred             EC-------CCCCHHHHHHHHHCCCCCCEEEEECCC-CCEEEEEHHHHH
Q ss_conf             71-------788512323432013565116540776-620466758899
Q gi|254780426|r  174 VP-------SSMLVSDLLTNIQESRIRMALVIDEHG-GTDGLVSYEDIV  214 (320)
Q Consensus       174 Vp-------e~~~l~~lL~~m~~~~~~~aiVvDE~G-~~~GiVTleDIl  214 (320)
                      +.       ++.++.+++..|++++.|-++|+|+.| .+.|++|..||.
T Consensus        76 ~~a~~~~~~~~a~v~d~~~~m~~~~~~hllVvd~~~~~l~GiiS~~DI~  124 (126)
T cd04640          76 LKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIA  124 (126)
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEHHHHC
T ss_conf             4630220003485999999999839808749989998898999879942


No 76 
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.10  E-value=4.7e-10  Score=85.71  Aligned_cols=110  Identities=22%  Similarity=0.307  Sum_probs=92.9

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHH-CCCCEEECC
Q ss_conf             2999863010367789798659817998418866422410299999876622356432233345767885-156579717
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNL-IKNILFVPS  176 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~-~r~~~~Vpe  176 (320)
                      ++++++.++++.++++.+.+++++.+||++++ ++++|+++.+|++..+.........       .+..+ .++++++.+
T Consensus         2 ~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~-~~~~G~it~~dl~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~   73 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLV-------TVGDVMTRDVVTVSP   73 (113)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCEEEEEECCC-CCEEEEEEHHHHHHHHHHCCCCCCC-------CEEEEEECCCEEEEE
T ss_conf             97796892989999999998398099999399-9599999889989887631574103-------304567505468973


Q ss_pred             CCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             885123234320135651165407766204667588999
Q gi|254780426|r  177 SMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       177 ~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      ++++.+++..|.+.+.+..+|+|+.|.+.|++|..|++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~Vvd~~~~~iG~vs~~di~~  112 (113)
T cd02205          74 DTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             CCHHHHHHHHHHHCCCEEEEEEECCCEEEEEEEHHHHHC
T ss_conf             211779999999849729999966997999998899746


No 77 
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=99.07  E-value=4.8e-10  Score=85.70  Aligned_cols=160  Identities=14%  Similarity=0.204  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHCCC--CC-----HHHHHHHHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEEC
Q ss_conf             999999997997689--89-----89999999873047757641312001299986301036778979865981799841
Q gi|254780426|r   55 KGIRLPRIDASLEGI--FS-----ETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYK  127 (320)
Q Consensus        55 eel~~l~~~~~~~G~--i~-----~~E~~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~  127 (320)
                      -|-++-+..+...|.  |+     +++.++++.+=+.      +-|.  .+-+++..+.++.++++++.+++|+-+||.+
T Consensus        56 TE~~MAIamA~~GGiGvIH~Nmsie~Qa~~V~kVK~~------~~~i--~~Pvti~pd~tv~d~~~l~~~~~~sg~pVv~  127 (479)
T PRK07807         56 AGRRMAETVARRGGLVVLPQDLPIDAVAETVAWVKSR------DLVF--DTPVTLAPDDTVSDALALIHKRAHGAVVVVD  127 (479)
T ss_pred             CCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCC------CCEE--CCCEEECCCCCHHHHHHHHHHHCCCCCCEEC
T ss_conf             7499999999779859987999999999999997113------7743--6998978987199999999983788874146


Q ss_pred             CCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC-CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEE
Q ss_conf             886642241029999987662235643223334576788515-6579717885123234320135651165407766204
Q gi|254780426|r  128 NSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIK-NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDG  206 (320)
Q Consensus       128 ~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r-~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~G  206 (320)
                      ++. .++|+|+-+|+- +.            ....++.++|+ +++++|+.+++.++...|++++....+|||+.|.+.|
T Consensus       128 ~~g-kLvGIvT~RDir-~~------------d~~~~v~~vMT~~lvt~~~g~sl~eA~~lL~~~kiekLpvVd~~~~L~g  193 (479)
T PRK07807        128 EEG-RPVGLVTEADCR-GV------------DRFTRVGDVMSTDLVTLPAGTDPRKAFDLLEAAPVKVAPVVDADGRLAG  193 (479)
T ss_pred             CCC-CEEEEEECHHHC-CC------------CCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCEEECCCCEEEE
T ss_conf             799-478898213411-47------------7777588862577366136678799999997535231137756992999


Q ss_pred             EEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCC
Q ss_conf             66758899998742221000000001246773378304535
Q gi|254780426|r  207 LVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTD  247 (320)
Q Consensus       207 iVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~  247 (320)
                      +||..||...      ..+    +... -.+|.++|-+.+.
T Consensus       194 LiT~kDi~k~------~~~----~~a~-D~~grL~VgAAVG  223 (479)
T PRK07807        194 VLTRTGALRA------TIY----TPAV-DAAGRLRVAAAVG  223 (479)
T ss_pred             EEEEEHHHHC------CCC----CCCC-CHHHCEEEEEEEC
T ss_conf             9996116454------468----8777-8223456788725


No 78 
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.01  E-value=2.4e-09  Score=81.14  Aligned_cols=163  Identities=18%  Similarity=0.236  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHCC--CCC-----HHHHHHHHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECC
Q ss_conf             9999999799768--989-----899999998730477576413120012999863010367789798659817998418
Q gi|254780426|r   56 GIRLPRIDASLEG--IFS-----ETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKN  128 (320)
Q Consensus        56 el~~l~~~~~~~G--~i~-----~~E~~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~  128 (320)
                      |-++-+..+...|  +|+     +++.++++.+=++.+-     |+  .+.+++.++.++.++++++.+++||-+||.++
T Consensus        62 e~~MAiamA~~GGiGVIHrn~sie~Q~~~V~~VKr~e~g-----~i--~dPit~~p~~ti~d~~~l~~~~~~sg~pVv~~  134 (499)
T PTZ00314         62 EHKMAIAMALMGGIGVIHNNCTVERQVEEVKKVKRFENG-----FI--MDPKSLSPEHTVSDVIEIKDKKGFSGIPITED  134 (499)
T ss_pred             CHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCC-----CC--CCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf             899999999779869987999999999999998763066-----20--69827389862999997567518863679863


Q ss_pred             C--CCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCC-CEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCE
Q ss_conf             8--66422410299999876622356432233345767885156-57971788512323432013565116540776620
Q gi|254780426|r  129 S--LDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKN-ILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTD  205 (320)
Q Consensus       129 ~--~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r~-~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~  205 (320)
                      +  ...++|+++-+|+.. .           .....++.++|.+ +++.++..++.++.+.|++++....+|||+.|.+.
T Consensus       135 g~~~gkL~GIvT~rD~~f-~-----------~d~~~~v~~vMt~~lvt~~~~isl~eA~~ll~~~kieklpvVd~~g~L~  202 (499)
T PTZ00314        135 GRPGGKLLGIVTSKDIDF-V-----------KDKSTPVSEIMTTDLVVGRYPITLEDANDVLNRSRKGVLPIVNDNGELV  202 (499)
T ss_pred             CCCCCEEEEEEECCCEEC-C-----------CCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCEE
T ss_conf             886886899983620232-3-----------0677588886156726725999999999999860331230665789589


Q ss_pred             EEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCC
Q ss_conf             466758899998742221000000001246773378304535
Q gi|254780426|r  206 GLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTD  247 (320)
Q Consensus       206 GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~  247 (320)
                      |++|..|+...-          ..+...+-.+|.++|-+.+.
T Consensus       203 glit~kDi~k~~----------~~P~a~~D~~grL~VgAAVg  234 (499)
T PTZ00314        203 ALVSRSDAVKNR----------DYPHASKDENKQLLVGAAIS  234 (499)
T ss_pred             EEEECCHHHHHH----------HCCCHHHHCCCCEEEEEEEC
T ss_conf             986303487753----------38712220138789999947


No 79 
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream.   The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives.  The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds.  CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.00  E-value=1.1e-09  Score=83.25  Aligned_cols=113  Identities=20%  Similarity=0.185  Sum_probs=85.7

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf             129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP  175 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp  175 (320)
                      ..++++..+.|++++.++|++++++++||.+++. +++|+++.+|++.++..+.....       .++.+.| ++...+.
T Consensus         2 ~~~vtv~p~~tv~~a~~~m~~~~i~~lPVvd~~g-~~~G~vt~~~ll~~~~~~~~~~~-------~~V~~vm~~~~~~v~   73 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESG-KILGMVTLGNLLSSLSSGKVQPS-------DPVSKALYKQFKRVN   73 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEECCCC-CEEEEEEHHHHHHHHHCCCCCCC-------CCHHHHHCCCCCCCC
T ss_conf             9997989989099999999984998568987999-68888879999999973899999-------828997446565147


Q ss_pred             CCCCHHH---------HHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHH
Q ss_conf             7885123---------23432013565116540776620466758899998
Q gi|254780426|r  176 SSMLVSD---------LLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVL  217 (320)
Q Consensus       176 e~~~l~~---------lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~i  217 (320)
                      .+.++..         .+..|..++...++++|+.|.+.||||.-|||..|
T Consensus        74 ~~~~l~~ls~~l~~~~~~lvv~~~~~~~~~v~~~~~k~vGIvTr~DLL~yl  124 (124)
T cd04608          74 KNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             CCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEHHHHHHHC
T ss_conf             998556731036732789999986025676277799899998679977039


No 80 
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=98.99  E-value=9.4e-10  Score=83.78  Aligned_cols=125  Identities=25%  Similarity=0.404  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCC
Q ss_conf             89999999873047757641312001299986301036778979865981799841886642241029999987662235
Q gi|254780426|r   72 ETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYA  151 (320)
Q Consensus        72 ~~E~~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~  151 (320)
                      +++.++++.+=+..+     -|+  .+.++++++.++.++.+++.+++|+-+||.+++. +++|+++.+|+- +.     
T Consensus        77 e~Q~~~V~~VKr~e~-----g~i--~~P~tl~P~~tv~d~~~l~~~~~~sg~PVv~~~~-kL~GiiT~rD~~-f~-----  142 (486)
T PRK05567         77 EEQAEEVRKVKRSES-----GVV--TDPVTVTPDTTLAEALALMARYGISGVPVVDEEG-KLVGIITNRDVR-FE-----  142 (486)
T ss_pred             HHHHHHHHHHHHHHC-----CCC--CCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCC-CEEEEEECCCEE-CC-----
T ss_conf             999999999975306-----713--7986768988899999999972878614876799-478886142011-00-----


Q ss_pred             CCCCCCCCCCCCHHHHCCC--CEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             6432233345767885156--5797178851232343201356511654077662046675889999
Q gi|254780426|r  152 KTNNINLNIQLSESNLIKN--ILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       152 ~~~~~~~~~~~~l~~~~r~--~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                            .....++.++|.+  .+++++..++.++.+.|++++...++|||+.|.+.|++|..|+...
T Consensus       143 ------~~~~~~V~~vMT~~~lvt~~~~is~~eA~~~l~~~kieklPvVd~~g~L~Glit~kDi~k~  203 (486)
T PRK05567        143 ------TDLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLLVVDDNGRLKGLITVKDIEKA  203 (486)
T ss_pred             ------CCCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCEEEEEEHHHHHHH
T ss_conf             ------2677654675345732892588999999999997313034277468968888776677765


No 81 
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.99  E-value=1.6e-09  Score=82.30  Aligned_cols=122  Identities=20%  Similarity=0.254  Sum_probs=104.5

Q ss_pred             CEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf             75764131200129998630103677897986598179984188664224102999998766223564322333457678
Q gi|254780426|r   86 KIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSES  165 (320)
Q Consensus        86 ~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~  165 (320)
                      -.+|+|+|.+..++..++.++++.+++..+.+.++--.-|++++. .++|+++--||-+++.....       .......
T Consensus       201 l~~V~dlM~~~~~lP~v~~~~~l~dai~~mt~k~lG~v~Vvd~~g-kL~GIiTDGDLRR~l~~~~~-------i~~~~~~  272 (326)
T PRK10892        201 LLRVSDIMHTGDEIPHVKKTASLRDALLEITRKNLGMTVICDDNM-MIEGIFTDGDLRRVFDMGVD-------LRQLSIA  272 (326)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCC-CEEEEEECHHHHHHHHHCCC-------CCCCCHH
T ss_conf             878999851376588537760299999987458934999985899-68999862689999870688-------3128799


Q ss_pred             HHC-CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             851-565797178851232343201356511654077662046675889999
Q gi|254780426|r  166 NLI-KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       166 ~~~-r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      ++| +.|.++.+++.+.++|..|++++..-.+|+|+ +.++|+|.+.|++.+
T Consensus       273 diMT~nP~tI~~d~la~eAL~iMe~~kIt~L~Vvd~-~k~vGIihihDll~~  323 (326)
T PRK10892        273 DVMTPGGIRVRPGILAVDALNLMQSRHITSVLVADG-DQLLGVLHMHDLLRA  323 (326)
T ss_pred             HHHCCCCCEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHC
T ss_conf             971899967899886999999998639818999889-999999767978676


No 82 
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.93  E-value=5.5e-09  Score=78.76  Aligned_cols=141  Identities=16%  Similarity=0.247  Sum_probs=104.3

Q ss_pred             HCCCCCHHHHH---HHHHHHCC--CCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHH
Q ss_conf             76898989999---99987304--77576413120012999863010367789798659817998418866422410299
Q gi|254780426|r   66 LEGIFSETEKE---IFNNILRF--RKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMR  140 (320)
Q Consensus        66 ~~G~i~~~E~~---ii~~vl~l--~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~k  140 (320)
                      +.|.+++.-+.   |+.-..+-  ...+++.+|+  ..++.+.+++++.++.+++..+|||.+||.++  |.++|-++-.
T Consensus        39 E~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~--spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~--~k~VGsItE~  114 (187)
T COG3620          39 EAGKVDPRLSTVKRILEALEEAEKTRITAKTIMH--SPVVSVSPDDSISDVVNLMRDKGISQLPVIEE--DKVVGSITEN  114 (187)
T ss_pred             HCCCCCCCHHHHHHHHHHHHHHHCCEEEHHHHCC--CCEEEECCHHHHHHHHHHHHHCCCCCCCEEEC--CEEEEEECHH
T ss_conf             6388793089999999999985466675766535--87058772466999999999759752754108--8645331498


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCHHHHCCC-CEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHH
Q ss_conf             999876622356432233345767885156-5797178851232343201356511654077662046675889999874
Q gi|254780426|r  141 DVISYISHMYAKTNNINLNIQLSESNLIKN-ILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMR  219 (320)
Q Consensus       141 Dll~~~~~~~~~~~~~~~~~~~~l~~~~r~-~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivG  219 (320)
                      ++...+.++...      -.....+.+|-+ -+.|.++.++.-.-..+..+.   |+.|-|.|.++||||..||+..+-|
T Consensus       115 ~iv~~~le~~e~------i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~---AVlV~e~G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         115 DIVRALLEGMES------IRSLRVREVMGEPFPTVSPDESLNVISQLLEEHP---AVLVVENGKVVGIITKADIMKLLAG  185 (187)
T ss_pred             HHHHHHHCCCCC------HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC---EEEEEECCCEEEEEEHHHHHHHHHC
T ss_conf             999997304221------2112189885588876799998799999984198---3899868936888759999998724


No 83 
>KOG1764 consensus
Probab=98.78  E-value=1.5e-08  Score=75.88  Aligned_cols=136  Identities=20%  Similarity=0.269  Sum_probs=81.0

Q ss_pred             CEEEHHEEECCC-EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCC-CCCCCC
Q ss_conf             757641312001-299986301036778979865981799841886642241029999987662235643223-334576
Q gi|254780426|r   86 KIRIDDIMISRV-SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNIN-LNIQLS  163 (320)
Q Consensus        86 ~~~v~diMtPr~-~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~-~~~~~~  163 (320)
                      .++..|.=++-- .+..+..+.++.++++.+...+.|-+||.+.+... +|+....|+......+........ ......
T Consensus       225 ~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~-v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~  303 (381)
T KOG1764         225 SKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKK-VGNYSRFDVIHLAREGTYNNLDLSCLSEALS  303 (381)
T ss_pred             HCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEECCCCCE-ECCEEEEHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf             188766404778777775178708999999987045744347577855-3215620012156427767777324213533


Q ss_pred             HHHHCC-CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHH
Q ss_conf             788515-65797178851232343201356511654077662046675889999874222
Q gi|254780426|r  164 ESNLIK-NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDIT  222 (320)
Q Consensus       164 l~~~~r-~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~  222 (320)
                      .+.... +++..-.+.++..++.+|..+++|-+.|||+.|.++|+||+.||+..++-.-.
T Consensus       304 ~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p~  363 (381)
T KOG1764         304 HRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTPS  363 (381)
T ss_pred             CCCCCCCCCEEEEECCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHHHHHCCC
T ss_conf             155456873798437749999999987386059998689867987558999999974737


No 84 
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.72  E-value=9.8e-08  Score=70.55  Aligned_cols=113  Identities=22%  Similarity=0.383  Sum_probs=95.9

Q ss_pred             HHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC
Q ss_conf             41312001299986301036778979865981799841886642241029999987662235643223334576788515
Q gi|254780426|r   90 DDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIK  169 (320)
Q Consensus        90 ~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r  169 (320)
                      .++|.  .+.+.+..+.++.++...+.+++++++||.+..  .++|+++.+|++.+.........        .+..++.
T Consensus         2 ~~~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~--~l~Giit~~di~~~~~~~~~~~~--------~v~~i~~   69 (117)
T COG0517           2 KDIMT--KDVITVKPDTSVRDALLLMSENGVSAVPVVDDG--KLVGIITERDILRALAAGGKRLL--------PVKEVMT   69 (117)
T ss_pred             CCCCC--CCCEEECCCCCHHHHHHHHHHCCCEEEEEEECC--EEEEEEEHHHHHHHHHCCCCCCC--------HHHHHHC
T ss_conf             65442--688089899819999999987493389974399--99999998999876641665533--------1788625


Q ss_pred             -CCEEECCCCCHHHHHHHHHC-CCCCCEEEEECCC-CCEEEEEHHHHH
Q ss_conf             -65797178851232343201-3565116540776-620466758899
Q gi|254780426|r  170 -NILFVPSSMLVSDLLTNIQE-SRIRMALVIDEHG-GTDGLVSYEDIV  214 (320)
Q Consensus       170 -~~~~Vpe~~~l~~lL~~m~~-~~~~~aiVvDE~G-~~~GiVTleDIl  214 (320)
                       ++..+.++.++.+++..|.+ .+.+..+|+|+.+ .++|++|..|++
T Consensus        70 ~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          70 KPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEHHHCC
T ss_conf             884677799889999999987267762569988988799898878749


No 85 
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.71  E-value=6.6e-08  Score=71.67  Aligned_cols=124  Identities=19%  Similarity=0.242  Sum_probs=100.4

Q ss_pred             CCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             04775764131200129998630103677897986598179984188664224102999998766223564322333457
Q gi|254780426|r   83 RFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQL  162 (320)
Q Consensus        83 ~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~  162 (320)
                      +|--.++.++|+  ...+.++..+++.++...+.+.|.|-+.+.+++. ...|||+-||+...+.....       +...
T Consensus       145 e~~~trv~~~~~--~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~-~~~GIvT~~dl~~~v~~~g~-------~~~~  214 (610)
T COG2905         145 EFILTRVGEVKT--LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSG-PLLGIVTRKDLRSRVIADGR-------SKTQ  214 (610)
T ss_pred             HHHHHHHHHHHC--CCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCC-CCCCEEEHHHHHHHHHHCCC-------CCCC
T ss_conf             588998777741--7875268657679999999960887289983798-74332422777899986589-------7423


Q ss_pred             CHHHHC-CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHH
Q ss_conf             678851-5657971788512323432013565116540776620466758899998
Q gi|254780426|r  163 SESNLI-KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVL  217 (320)
Q Consensus       163 ~l~~~~-r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~i  217 (320)
                      ++..+| .|++.|..+..+.+++-.|-++++|-.+|. |.|.+.|+||+.||+.-.
T Consensus       215 ~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~-e~gq~~Gilt~~dIl~l~  269 (610)
T COG2905         215 KVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVT-EDGQPLGILTLTDILRLF  269 (610)
T ss_pred             CHHHHHCCCCEEECCCCHHHHHHHHHHHHCCCEEEEE-CCCEEEEEEEHHHHHHHH
T ss_conf             3545414684454476569999999998077442361-189046776699999761


No 86 
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.70  E-value=1.9e-07  Score=68.59  Aligned_cols=133  Identities=17%  Similarity=0.179  Sum_probs=97.0

Q ss_pred             HHHHHHHHCCCCEEEHHEEECC-CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCC
Q ss_conf             9999987304775764131200-129998630103677897986598179984188664224102999998766223564
Q gi|254780426|r   75 KEIFNNILRFRKIRIDDIMISR-VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKT  153 (320)
Q Consensus        75 ~~ii~~vl~l~~~~v~diMtPr-~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~  153 (320)
                      ++.+.++=...-.+|++||.+- ..++.........++++.+.+++.+.+.|.+.+. .+.|++...++........   
T Consensus       262 ~~F~~~v~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~al~~m~~~~~~~~~vvd~~~-~~~G~v~~~~~~~~~~~~~---  337 (400)
T PRK10070        262 RTFFRGVDISQVFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGN-KFVGAVSIDSLKAALTQQQ---  337 (400)
T ss_pred             HHHHCCCCHHHCEEHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEECCCC-EEEEEEEHHHHHHHHHCCC---
T ss_conf             987554778770239896246875213148886999999999855986799986998-0889988999997763377---


Q ss_pred             CCCCCCCCCCHHHHCCCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHH
Q ss_conf             3223334576788515657971788512323432013565116540776620466758899998742
Q gi|254780426|r  154 NNINLNIQLSESNLIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRD  220 (320)
Q Consensus       154 ~~~~~~~~~~l~~~~r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGe  220 (320)
                              .....+.+.+..|++++++.+++..|.+.... ..|||+.|.+.|+||...++..|-.+
T Consensus       338 --------~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~-~~Vvd~~~~l~G~it~~~ll~~L~~~  395 (400)
T PRK10070        338 --------GLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             --------CHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC-EEEECCCCCEEEEEEHHHHHHHHHHC
T ss_conf             --------63667505884239999899999999728996-38987999199999879999998752


No 87 
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=98.57  E-value=1.6e-07  Score=69.12  Aligned_cols=149  Identities=21%  Similarity=0.273  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCC
Q ss_conf             89999999873047757641312001299986301036778979865981799841886642241029999987662235
Q gi|254780426|r   72 ETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYA  151 (320)
Q Consensus        72 ~~E~~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~  151 (320)
                      +++.++++.+=++.     ..|+  .+.+++.++.++.++.+++.+++|+-+||.+++. .+.|++..+|....-..   
T Consensus        72 e~Q~~~V~~VK~~e-----~g~i--~~Piti~p~~ti~~~~~l~~~~~~sg~pVv~~~~-~~~~i~~~~~~~~~~~~---  140 (467)
T pfam00478        72 EEQAEEVRKVKRFE-----SGFI--TDPVTVSPDTTVAEALELKERYGISGVPVTEDGK-LLGGLVGIRTSRDIDFL---  140 (467)
T ss_pred             HHHHHHHHHHHHCC-----CCCC--CCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCC-EEEEEEEEECCCCCCCC---
T ss_conf             99999999997433-----6821--7875369876599999998972878326820797-46899877624433445---


Q ss_pred             CCCCCCCCCCCCHHHHCCCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHC
Q ss_conf             64322333457678851565797178851232343201356511654077662046675889999874222100000000
Q gi|254780426|r  152 KTNNINLNIQLSESNLIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSM  231 (320)
Q Consensus       152 ~~~~~~~~~~~~l~~~~r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~  231 (320)
                             ...........+++.+++..++.++.+.|++++...++|||+.|.+.|++|..|+...      ..+    +.
T Consensus       141 -------~~~~~~~~~~~~lvt~~~~~~~~ea~~~l~~~kieklpvvd~~g~L~glit~kDi~k~------~~~----P~  203 (467)
T pfam00478       141 -------SKVSVVMTMTEDLVTAPEGITLEEANEILHEHKIEKLPIVDDDGELVGLITRKDIEKA------RDY----PN  203 (467)
T ss_pred             -------CCCCEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHCCEECCCCCEEEEEEHHHHHHH------HCC----CC
T ss_conf             -------4320110135542772488998999999997556415444678837888874346774------207----85


Q ss_pred             CCCCCCCEEEEECCCCH
Q ss_conf             12467733783045359
Q gi|254780426|r  232 ISAVSDNTFIVDARTDL  248 (320)
Q Consensus       232 i~~~~~g~~~v~G~~~l  248 (320)
                      ..+-..|.++|-+.+..
T Consensus       204 a~~D~~grL~VgAAVG~  220 (467)
T pfam00478       204 ASKDAQGRLLVGAAVGT  220 (467)
T ss_pred             CCCCCCCCEEEEEEECC
T ss_conf             22265677799998067


No 88 
>KOG0474 consensus
Probab=98.52  E-value=1.6e-07  Score=69.11  Aligned_cols=135  Identities=10%  Similarity=0.217  Sum_probs=104.0

Q ss_pred             CCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCC----CCCCCEEHHHHHHHHHHCCCCCC----
Q ss_conf             0477576413120012999863010367789798659817998418866----42241029999987662235643----
Q gi|254780426|r   83 RFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLD----NPRGMVHMRDVISYISHMYAKTN----  154 (320)
Q Consensus        83 ~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d----~iiGiv~~kDll~~~~~~~~~~~----  154 (320)
                      .+.+.+|+|+|.+  .+++++.-..+..+.+.++.+.|.-|||.++...    .+.|++..+.++..+.+..-...    
T Consensus       578 ~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~  655 (762)
T KOG0474         578 YMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST  655 (762)
T ss_pred             HHHHHHHHHHCCC--CEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             7653117664268--85887322109999999873476887523578876102366888999999998744542057665


Q ss_pred             -C--------------------------CCCCCCCCHHHHCCC-CEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEE
Q ss_conf             -2--------------------------233345767885156-579717885123234320135651165407766204
Q gi|254780426|r  155 -N--------------------------INLNIQLSESNLIKN-ILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDG  206 (320)
Q Consensus       155 -~--------------------------~~~~~~~~l~~~~r~-~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~G  206 (320)
                       .                          .+..--.++..++.| |+.||+++++..++..||+-..+-.+||+.-.+..|
T Consensus       656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~g  735 (762)
T KOG0474         656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVG  735 (762)
T ss_pred             CCCCHHHCCCHHHHHHCCCCHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEE
T ss_conf             67604303787776441785565541667686430553346999965474310578999999735015898517786366


Q ss_pred             EEEHHHHH-HHHHH
Q ss_conf             66758899-99874
Q gi|254780426|r  207 LVSYEDIV-SVLMR  219 (320)
Q Consensus       207 iVTleDIl-e~ivG  219 (320)
                      ++|..|+. +.+.|
T Consensus       736 ilTR~D~~~~~~l~  749 (762)
T KOG0474         736 ILTRKDLARYRILG  749 (762)
T ss_pred             EEEHHHHHHHHHHC
T ss_conf             77566434677732


No 89 
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990    Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase     IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP .  Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH     IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=98.42  E-value=3.9e-07  Score=66.59  Aligned_cols=188  Identities=15%  Similarity=0.245  Sum_probs=114.1

Q ss_pred             CCEE--EHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             7757--64131200129998630103677897986598179984188664224102999998766223564322333457
Q gi|254780426|r   85 RKIR--IDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQL  162 (320)
Q Consensus        85 ~~~~--v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~  162 (320)
                      ...+  |.++||||.++++.+.+-+++++.+.+.+++..++||.+++. +++|+|+.+|+.+....+.+..+..-.+.+.
T Consensus       150 ~~~~daV~~~MT~~~~~iT~~e~i~~e~A~~~L~~~r~ekLpvVd~~~-~lVgLiT~~Di~~~~~~P~A~kd~vG~~GrL  228 (476)
T TIGR01302       150 KGKKDAVSEVMTPREELITVPEGIDLEEALKVLHKHRIEKLPVVDKDG-ELVGLITVKDIVKRREFPHASKDTVGENGRL  228 (476)
T ss_pred             CCCCCCEEECCCCCCCCEEECCCCCHHHHHHHHHHHCCCEEEEECCCC-CEEEEEEHHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf             688330101120376434841677789999998860865047882789-8899986447889863888778874888608


Q ss_pred             C-----------------HHHHCCCCEEECC----CCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHH
Q ss_conf             6-----------------7885156579717----885123234320135651165407766204667588999987422
Q gi|254780426|r  163 S-----------------ESNLIKNILFVPS----SMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDI  221 (320)
Q Consensus       163 ~-----------------l~~~~r~~~~Vpe----~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei  221 (320)
                      .                 |.+-.=+++++--    +....+.++.+|+...++=+|.   |++.=-=--++|+++-+   
T Consensus       229 ~VgAAvg~r~~D~~R~~~L~~AGvDv~viDsshGhs~~vl~~ik~~k~~Yp~~~iia---GNVaT~~~a~~LI~AgA---  302 (476)
T TIGR01302       229 IVGAAVGTREDDLERAEALVEAGVDVIVIDSSHGHSIYVLDSIKKIKKTYPDLDIIA---GNVATAEQAKALIDAGA---  302 (476)
T ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEE---CCCCCHHHHHHHHHCCC---
T ss_conf             999884689861899999996596589981665453789999999986388057994---34411788988985288---


Q ss_pred             HHHCCCHHHCCCC--CCCCE-------------------------------EEEECCCCHH-HHHHHHCCCCCCCCCCCC
Q ss_conf             2100000000124--67733-------------------------------7830453599-999982888887777467
Q gi|254780426|r  222 TSEHHSKKSMISA--VSDNT-------------------------------FIVDARTDLE-ELAKIIGTDCNCLKGEQD  267 (320)
Q Consensus       222 ~de~d~~~~~i~~--~~~g~-------------------------------~~v~G~~~l~-~l~~~l~~~l~~~~~~~~  267 (320)
                          |     ..+  +++||                               .+.||.+.=. |+.+.|-+--+       
T Consensus       303 ----D-----g~rVGiGpGSICTTr~V~gVGvPQ~TAv~~Va~~A~~~Gi~VIADGGIr~SGDivKAlAaGA~-------  366 (476)
T TIGR01302       303 ----D-----GLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGAD-------  366 (476)
T ss_pred             ----C-----EEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCC-------
T ss_conf             ----8-----789836889811001565127626889999999997279909983775625589999981677-------


Q ss_pred             CCCHHHHHHHHHCCCCCCCCEEEEECCEEEEE
Q ss_conf             43179999998423473798899758959999
Q gi|254780426|r  268 VDSLGGLIFSVLDRIPARGEVVLEIPGFEIVI  299 (320)
Q Consensus       268 ~~Ti~G~i~~~l~~iP~~Ge~v~~~~g~~f~V  299 (320)
                      +-=||+|+-.--+   .+|+.++ .+|-+|++
T Consensus       367 aVMlGslLAGT~E---sPGe~~~-~nGrryK~  394 (476)
T TIGR01302       367 AVMLGSLLAGTTE---SPGEYYI-INGRRYKS  394 (476)
T ss_pred             EEHHCCCCCCCCC---CCCCEEE-ECCEEEEE
T ss_conf             2202342101633---8872699-66878987


No 90 
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually 
Probab=98.37  E-value=2.2e-06  Score=61.70  Aligned_cols=106  Identities=9%  Similarity=0.034  Sum_probs=72.4

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCC-C---CC----------C
Q ss_conf             12999863010367789798659817998418866422410299999876622356432233-3---45----------7
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINL-N---IQ----------L  162 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~-~---~~----------~  162 (320)
                      ++.+.+..++|+.|++++|.+.+.+..||.+++. .++|++...||..++............ .   ..          .
T Consensus         1 t~~vtV~p~ttv~EA~~lM~~~~~~~~~VVD~~~-~L~GIvt~gDi~R~~~~~~~~~~~~~~~~~~~~~~~vs~v~t~~~   79 (133)
T cd04592           1 TKYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDD-FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI   79 (133)
T ss_pred             CCEEEECCCCCHHHHHHHHHHHCCCEEEEECCCC-CEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEE
T ss_conf             9459989998599999999981886579983899-789997879999998762356456320001244432334564203


Q ss_pred             CHHHHCCCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf             67885156579717885123234320135651165407766
Q gi|254780426|r  163 SESNLIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGG  203 (320)
Q Consensus       163 ~l~~~~r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~  203 (320)
                      ....-.+.++.+++++++.++.+.|.+++.+-..||++.++
T Consensus        80 ~~~~~~~~~~tv~pd~~l~~a~~lM~~~~i~~LPVV~~~~~  120 (133)
T cd04592          80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGVD  120 (133)
T ss_pred             EECCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCEEECCCC
T ss_conf             62551100389789999999999999869885876707766


No 91 
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.24  E-value=7.6e-07  Score=64.70  Aligned_cols=50  Identities=22%  Similarity=0.311  Sum_probs=39.9

Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHH
Q ss_conf             65797178851232343201356511654077662046675889999874
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMR  219 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivG  219 (320)
                      ||+++++++++.+++..|.+++....+|||+.|.++||+|-.|++..+.+
T Consensus         2 pPvtv~~~~si~eA~~~M~~~~ig~l~VVD~~~~LvGIiT~rDl~r~~~~   51 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIG   51 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHHHHHHHC
T ss_conf             79798996999999999998399879998499959999878999999974


No 92 
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.22  E-value=6.5e-06  Score=58.61  Aligned_cols=85  Identities=19%  Similarity=0.323  Sum_probs=54.3

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHH-HCCCHHHCCCCCCCCEEEEECCCC
Q ss_conf             5657971788512323432013565116540776620466758899998742221-000000001246773378304535
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITS-EHHSKKSMISAVSDNTFIVDARTD  247 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~d-e~d~~~~~i~~~~~g~~~v~G~~~  247 (320)
                      |.|+++.+++++.++++.|.+++.+-++|+|+.|.++|++|..|++..+..+... .....-..+-  ...-..++...+
T Consensus         1 r~pvtv~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGiit~~Dll~~~~~~~~~~~~~~~v~~iM--~~~~~tv~~~~~   78 (114)
T cd04629           1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIM--TTEVLTVSPDDS   78 (114)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEEEHHHHHHHHHHHHCCCCCCCEEHHHC--CCCCEEEECCCC
T ss_conf             989997992999999999997199789999489929999967899999977540588765918851--468879957999


Q ss_pred             HHHHHHHH
Q ss_conf             99999982
Q gi|254780426|r  248 LEELAKII  255 (320)
Q Consensus       248 l~~l~~~l  255 (320)
                      +.+..+.+
T Consensus        79 ~~~a~~~m   86 (114)
T cd04629          79 IVDLAQLM   86 (114)
T ss_pred             HHHHHHHH
T ss_conf             99999998


No 93 
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.21  E-value=2.3e-06  Score=61.56  Aligned_cols=67  Identities=13%  Similarity=0.223  Sum_probs=51.1

Q ss_pred             HHHHHHHHH----CCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHH
Q ss_conf             999999873----04775764131200129998630103677897986598179984188664224102999998
Q gi|254780426|r   74 EKEIFNNIL----RFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVIS  144 (320)
Q Consensus        74 E~~ii~~vl----~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~  144 (320)
                      |+++++.+.    ++.+.+|+++|++  ++++++.++++.++.+.|.++++.++||.+++  +++|+++.+|+++
T Consensus        41 ~rDi~~~~~~~~~~~~~~~V~~iMt~--~~~tv~~~~~i~~a~~~M~~~~i~~lpVvd~g--~lvGiit~~Di~r  111 (112)
T cd04625          41 FREVLQAMAQHGAGVLDTTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLDGG--TLLGVISFHDVAK  111 (112)
T ss_pred             HHHHHHHHHHCCCCCCCCCHHHHEEC--CCEEECCCCHHHHHHHHHHHCCCEEEEEEECC--EEEEEEEHHHHHC
T ss_conf             79999999970998011708883348--97799899969999997686697699999999--9999999799635


No 94 
>TIGR00393 kpsF sugar isomerase, KpsF/GutQ family; InterPro: IPR004800 This is a family of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. The group includes GutQ, a protein of the glucitol operon and KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of Escherichia coli.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process.
Probab=98.20  E-value=1.1e-06  Score=63.71  Aligned_cols=135  Identities=13%  Similarity=0.206  Sum_probs=107.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             89999999999799768989899999998730477576413120012999863010367789798659817998418866
Q gi|254780426|r   52 SHHKGIRLPRIDASLEGIFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLD  131 (320)
Q Consensus        52 ~~~eel~~l~~~~~~~G~i~~~E~~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d  131 (320)
                      -++||...    ++-.|.|..   +++        .+|+|+|.-+.++..+-..+++.+++-.+.+.+-----||+++. 
T Consensus       135 F~~eDFA~----~HPGG~LG~---kLL--------~kV~dlm~t~d~lP~v~~tas~~DAL~e~~~~~LG~~~v~~~~~-  198 (272)
T TIGR00393       135 FSEEDFAK----FHPGGALGR---KLL--------VKVKDLMQTDDELPLVAPTASFKDALLEMSRKRLGLAVVCDENE-  198 (272)
T ss_pred             CCHHHHHC----CCCCHHHHH---HHH--------HHHHHHHCCCCCCCCEECCCCCEEEEEEEECCCCCEEEEEECCC-
T ss_conf             88424411----487046667---888--------87677640665678222367720210233137861799971555-


Q ss_pred             CCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCC-CEEEC-CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEE
Q ss_conf             422410299999876622356432233345767885156-57971-788512323432013565116540776620466
Q gi|254780426|r  132 NPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKN-ILFVP-SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLV  208 (320)
Q Consensus       132 ~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r~-~~~Vp-e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiV  208 (320)
                      .+.||++==|+-+.+.......      -+.+++++|.+ +..+. ....+.++++.|++++++.++|||+.|.+.|+|
T Consensus       199 ~~~Gv~tDGD~RR~l~~~g~~~------l~~~v~~~mT~~p~~~~n~~~~l~~A~~~l~~~kI~~~~vvdd~nkl~G~~  271 (272)
T TIGR00393       199 QLKGVFTDGDLRRVLALLGGGA------LKKEVKDFMTLGPKTLKNSDELLVEALEFLKKRKITSLVVVDDENKLLGVL  271 (272)
T ss_pred             CEEEEEECCHHHHHHHHHCCHH------CCCCHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEE
T ss_conf             2467871465999998816600------023122210688813401456899999998727942899983897178753


No 95 
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857    This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=98.20  E-value=9.5e-06  Score=57.52  Aligned_cols=130  Identities=23%  Similarity=0.314  Sum_probs=99.8

Q ss_pred             CCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEEC--------CCCCCCCCCEEHHHHHHHHHHCCCCCC
Q ss_conf             047757641312001299986301036778979865981799841--------886642241029999987662235643
Q gi|254780426|r   83 RFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYK--------NSLDNPRGMVHMRDVISYISHMYAKTN  154 (320)
Q Consensus        83 ~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~--------~~~d~iiGiv~~kDll~~~~~~~~~~~  154 (320)
                      .|.+.++++.-.|  .++.+..+.++.+++++++++||+.+||..        .+. .|.|.|..+.+|..+...++...
T Consensus       362 ~~~~~~v~~l~L~--~~v~~~~t~tv~~ai~iLre~GfdQ~PVv~pga~~P~veag-~v~G~v~l~~lL~~l~~~~a~~~  438 (527)
T TIGR01137       362 VFGNARVKDLHLP--ALVTVHPTETVGDAIEILREYGFDQLPVVKPGAAEPDVEAG-KVLGSVTLRELLSALFAKKAKLE  438 (527)
T ss_pred             HHCCCEEECCCCC--CCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-EEEEEEEHHHHHHHHHHCCCCCC
T ss_conf             4256364156688--73454676408999999997487307620778888972353-47887426778999984246755


Q ss_pred             CCCCCCCCCHHHHC---------------CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC------------CEEE
Q ss_conf             22333457678851---------------56579717885123234320135651165407766------------2046
Q gi|254780426|r  155 NINLNIQLSESNLI---------------KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGG------------TDGL  207 (320)
Q Consensus       155 ~~~~~~~~~l~~~~---------------r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~------------~~Gi  207 (320)
                      +.-...-...+.+-               .+-.-+-.+.++.+|-+.|..  .+.|+|++|.-.            +.||
T Consensus       439 D~v~Gkyldfk~~~~Fndvssynenk~~~~~~~~i~~~~~l~~L~~~le~--~~~a~V~~e~~pyhstGkssqrq~~~gv  516 (527)
T TIGR01137       439 DAVSGKYLDFKVMSRFNDVSSYNENKSKKKKFIQIGEGEKLADLSKFLEK--NSSAIVVEEGKPYHSTGKSSQRQMVIGV  516 (527)
T ss_pred             CCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHCC--CCCEEEEECCCCCCCCCCCCCCEEEEEE
T ss_conf             44343000344453210100010102467676544677518999998516--9618997078232125654243278986


Q ss_pred             EEHHHHHHHH
Q ss_conf             6758899998
Q gi|254780426|r  208 VSYEDIVSVL  217 (320)
Q Consensus       208 VTleDIle~i  217 (320)
                      ||.-|||.-|
T Consensus       517 VT~~DLL~fL  526 (527)
T TIGR01137       517 VTKIDLLSFL  526 (527)
T ss_pred             EEHHHHHHHC
T ss_conf             4412244312


No 96 
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.19  E-value=5.2e-06  Score=59.25  Aligned_cols=113  Identities=13%  Similarity=0.228  Sum_probs=64.6

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCCH
Q ss_conf             56579717885123234320135651165407766204667588999987422210000000012467733783045359
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDL  248 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~l  248 (320)
                      |.++.+++++++.++++.|++++.+.++|+|+.|.++|+||..|++..+........................-....++
T Consensus         1 rdvvtv~~~~tl~ea~~~m~~~~~~~lpVvd~~~~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (132)
T cd04636           1 KDVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV   80 (132)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCH
T ss_conf             99879689197999999999729978999959993999988899999986267620000000000002333102038999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCHHHHHHH-HHCCCCC
Q ss_conf             99999828888877774674317999999-8423473
Q gi|254780426|r  249 EELAKIIGTDCNCLKGEQDVDSLGGLIFS-VLDRIPA  284 (320)
Q Consensus       249 ~~l~~~l~~~l~~~~~~~~~~Ti~G~i~~-~l~~iP~  284 (320)
                      .++   +..+..+..++.....+.-++.+ .+.++|-
T Consensus        81 ~di---Mt~~~~tv~~~~~l~~a~~~m~~~~i~~lpV  114 (132)
T cd04636          81 EEI---MTKKVITVDEDTTIEDVARIMSKKNIKRLPV  114 (132)
T ss_pred             HHH---CCCCCEEECCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             996---7899879999794999999999629878999


No 97 
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.17  E-value=8.8e-06  Score=57.74  Aligned_cols=49  Identities=22%  Similarity=0.388  Sum_probs=39.6

Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHH
Q ss_conf             6579717885123234320135651165407766204667588999987
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLM  218 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~iv  218 (320)
                      ||++|++++++.++++.|.+++.+.++|+|+.|.++||||..|++..+.
T Consensus         2 pP~tV~~~~tv~ea~~~m~~~~~~~~pVvD~~g~lvGIvT~~Dl~r~~~   50 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALE   50 (115)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHH
T ss_conf             7838899199999999998749989999949998899988999999997


No 98 
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.16  E-value=1.7e-06  Score=62.39  Aligned_cols=60  Identities=18%  Similarity=0.252  Sum_probs=43.0

Q ss_pred             HCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHH
Q ss_conf             304775764131200129998630103677897986598179984188664224102999998
Q gi|254780426|r   82 LRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVIS  144 (320)
Q Consensus        82 l~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~  144 (320)
                      ..+...+|+++|++  ++++++.++++.++++.+.+++++++||.+++. +++|+++..|+++
T Consensus        53 ~~~~~~~v~~iM~~--~~i~v~~~~~l~~a~~~m~~~~i~~lpVvd~~~-~~vGiIt~~Dilr  112 (113)
T cd04622          53 RDPDTTTVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDG-RLVGIVSLGDLAR  112 (113)
T ss_pred             CCHHHCCHHHHHCC--CCEEEECCCCHHHHHHHHHHCCCCEEEEEECCC-EEEEEEEHHHHHC
T ss_conf             98200776786415--767998899879999999857965899990899-8999999799547


No 99 
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain.  Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.16  E-value=3.3e-06  Score=60.54  Aligned_cols=58  Identities=14%  Similarity=0.192  Sum_probs=31.9

Q ss_pred             CCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHH
Q ss_conf             0477576413120012999863010367789798659817998418866422410299999
Q gi|254780426|r   83 RFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVI  143 (320)
Q Consensus        83 ~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll  143 (320)
                      +..+.+|+++|++  ++.+++.++++.++++.+.+++++++||.+++. +++|+++..||+
T Consensus        54 ~~~~~~v~~iMt~--~~~tv~~~~~l~~a~~~m~~~~i~~lpVvd~~~-~~vGiit~~Dil  111 (113)
T cd04587          54 DPESTLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSG-QVVGLLDVTKLT  111 (113)
T ss_pred             CHHHCEEEEEECC--CCEEEECCCCHHHHHHHHHHCCCEEEEEEECCC-EEEEEEEHHHHH
T ss_conf             8320898866616--846990799999999999877941999992699-899999848852


No 100
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.15  E-value=2.3e-06  Score=61.59  Aligned_cols=69  Identities=14%  Similarity=0.312  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHC----CCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHH
Q ss_conf             99999998730----4775764131200129998630103677897986598179984188664224102999998
Q gi|254780426|r   73 TEKEIFNNILR----FRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVIS  144 (320)
Q Consensus        73 ~E~~ii~~vl~----l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~  144 (320)
                      .|++++..+..    ..+.+|+++||  .+++++..++++.++++.+.++++.++||++++. .++|+++..|+++
T Consensus        41 Te~Di~r~~~~~~~~~~~~~V~~vMt--~~vitv~~~~~i~~a~~~M~~~~i~~lPVVD~~~-~~vGiit~~Dilk  113 (114)
T cd04619          41 TKTDVVRQMGRCGGPGCTAPVENVMT--RAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENA-RPLGVLNARDALK  113 (114)
T ss_pred             EHHHHHHHHHHCCCCCCCCCHHHHCC--CCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCC-EEEEEEEHHHEEC
T ss_conf             94999999873079866789999615--8988999989099999988876985889990799-5999999354542


No 101
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.14  E-value=2.9e-06  Score=60.93  Aligned_cols=47  Identities=17%  Similarity=0.382  Sum_probs=39.1

Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             65797178851232343201356511654077662046675889999
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      .|+.|.+++++.++++.|++++....+|+|+.|.++||||..|++.+
T Consensus         2 ~Pvtv~~dtti~eA~~~M~~~~v~~l~VvD~~~~lvGIiT~~Dl~~~   48 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGE   48 (126)
T ss_pred             CCEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCC
T ss_conf             89696899959999999998397679898799979999976300121


No 102
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.14  E-value=3.7e-06  Score=60.23  Aligned_cols=67  Identities=15%  Similarity=0.330  Sum_probs=49.2

Q ss_pred             HHHHHHHHH----CCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHH
Q ss_conf             999999873----04775764131200129998630103677897986598179984188664224102999998
Q gi|254780426|r   74 EKEIFNNIL----RFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVIS  144 (320)
Q Consensus        74 E~~ii~~vl----~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~  144 (320)
                      +++++.+++    +..+.+|+++|++  .+.+++.++++.++++.+.+++..++||.+++  +++|+++.+|++.
T Consensus        43 ~~Di~~~~~~~~~~~~~~~V~~vMt~--~v~tv~~d~~~~~a~~~m~~~~i~~lpVvd~~--~lvGiit~~Dil~  113 (114)
T cd04630          43 MRDILKKVVAEGRDPDRVNVYEIMTK--PLISVSPDMDIKYCARLMERTNIRRAPVVENN--ELIGIISLTDIFL  113 (114)
T ss_pred             EHHHHHHHHHCCCCCCCCCHHHHCCC--CEEEECCCCCHHHHHHHHHHCCCCEEEEEECC--EEEEEEEHHHHHC
T ss_conf             18989999846789444498682703--54999994949999999997797299999999--9999997689647


No 103
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.14  E-value=4.2e-06  Score=59.86  Aligned_cols=49  Identities=27%  Similarity=0.285  Sum_probs=29.0

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHH
Q ss_conf             56579717885123234320135651165407766204667588999987
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLM  218 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~iv  218 (320)
                      ||++.+.+++++.++++.|++++.+-.+|+|+ |.++|++|..|++..+.
T Consensus         1 r~vvtv~~~~tl~ea~~~m~~~~i~~lpVvd~-~~~vGiiT~~Di~~~l~   49 (121)
T cd04633           1 KPVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALR   49 (121)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEEEC-CEEEEEEEHHHHHHHHH
T ss_conf             99479799398999999999709988999989-99887875999999997


No 104
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.14  E-value=1e-05  Score=57.37  Aligned_cols=83  Identities=18%  Similarity=0.293  Sum_probs=58.8

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCCH
Q ss_conf             56579717885123234320135651165407766204667588999987422210000000012467733783045359
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDL  248 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~l  248 (320)
                      ||++.+++++++.++++.|++++.+.++|+|+.|.++|++|..|++..+......    ..+-..-....-..++...++
T Consensus         1 r~vvtv~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~lvGiiT~~Di~~~~~~~~~~----~~~v~~~m~~~~~tv~~~~~l   76 (112)
T cd04624           1 RPVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGIDL----DTPVSEIMTRDLVTVDPDEPV   76 (112)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCHHHHHHHCCCCC----CCCEEEEECCCCEEECCCCCH
T ss_conf             9978978939599999999862998899993998299999820458898648743----442045651671678799989


Q ss_pred             HHHHHHH
Q ss_conf             9999982
Q gi|254780426|r  249 EELAKII  255 (320)
Q Consensus       249 ~~l~~~l  255 (320)
                      .+..+.+
T Consensus        77 ~~a~~~m   83 (112)
T cd04624          77 AEAAKLM   83 (112)
T ss_pred             HHHHHHH
T ss_conf             9999999


No 105
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain.  Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.14  E-value=3.4e-06  Score=60.46  Aligned_cols=55  Identities=15%  Similarity=0.302  Sum_probs=28.7

Q ss_pred             CEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHH
Q ss_conf             75764131200129998630103677897986598179984188664224102999998
Q gi|254780426|r   86 KIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVIS  144 (320)
Q Consensus        86 ~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~  144 (320)
                      +.+|+++|+  .++.+++.++++.++++.|.+++.+++||.+++  +++|+++.+||+.
T Consensus        56 ~~~V~~vms--~~~~ti~~~~~~~~a~~~M~~~~i~~lpV~d~~--~~vGivt~~Dil~  110 (111)
T cd04589          56 STPVGEIAT--FPLITVDPDDFLFNALLLMTRHRIHRVVVREGG--EVVGVLEQTDLLS  110 (111)
T ss_pred             CCCHHHHCC--CCCEEECCCCCHHHHHHHHHHCCCEEEEEEECC--EEEEEEEHHHHHC
T ss_conf             889999287--999899997929999999998798088999899--9999999688228


No 106
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC.  SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus).  SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB.  It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.11  E-value=1.5e-05  Score=56.32  Aligned_cols=83  Identities=23%  Similarity=0.347  Sum_probs=52.8

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCC-CCCEEEEECCCC
Q ss_conf             5657971788512323432013565116540776620466758899998742221000000001246-773378304535
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAV-SDNTFIVDARTD  247 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~-~~g~~~v~G~~~  247 (320)
                      |.++.+++++++.++++.|.+++.+..+|+|+.|.+.|+||..|++..+.-.-.    .....+... ...-..++-..+
T Consensus         1 rdvvtv~~~~tl~ea~~~m~~~~~~~~pVvd~~~~lvGiit~~Dl~~~l~~~~~----~~~~~v~~im~~~~~~v~~~~~   76 (114)
T cd04613           1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSL----YDLVVASDIMTKPPVVVYPEDS   76 (114)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHHHCCC----CCCCEEEHHCCCCCEEEECCCC
T ss_conf             997695890989999999986199789999289949999999999999970566----5572931203629659913678


Q ss_pred             HHHHHHHH
Q ss_conf             99999982
Q gi|254780426|r  248 LEELAKII  255 (320)
Q Consensus       248 l~~l~~~l  255 (320)
                      +.+..+.|
T Consensus        77 l~~a~~~m   84 (114)
T cd04613          77 LEDALKKF   84 (114)
T ss_pred             HHHHHHHH
T ss_conf             89999999


No 107
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.11  E-value=1.5e-05  Score=56.14  Aligned_cols=51  Identities=24%  Similarity=0.360  Sum_probs=28.6

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHH
Q ss_conf             565797178851232343201356511654077662046675889999874
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMR  219 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivG  219 (320)
                      |+++++++++++.++++.|.+++.+-++|+|+.|.+.|++|..|++..+..
T Consensus         1 r~vvti~~~~tl~ea~~~m~~~~~~~l~Vvd~~~~l~Giit~~Di~~~~~~   51 (113)
T cd04623           1 RDVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVAL   51 (113)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHH
T ss_conf             997696893979999999997399889999089829999976899999986


No 108
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.09  E-value=3.7e-06  Score=60.22  Aligned_cols=51  Identities=20%  Similarity=0.257  Sum_probs=36.6

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHH
Q ss_conf             565797178851232343201356511654077662046675889999874
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMR  219 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivG  219 (320)
                      ++++.+++++++.++++.|++++.+..+|+|+.|.+.|+||..|++..+..
T Consensus         2 ~~vitv~~~~tl~~a~~~m~~~~i~~lpVvd~~~~lvGiit~~Dil~~~~~   52 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAEL   52 (135)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCEEEEEEEHHHHHHHHHC
T ss_conf             999899993939999999997399679999089979999981897644541


No 109
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.09  E-value=3.1e-06  Score=60.67  Aligned_cols=56  Identities=20%  Similarity=0.357  Sum_probs=37.7

Q ss_pred             CCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHH
Q ss_conf             477576413120012999863010367789798659817998418866422410299999
Q gi|254780426|r   84 FRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVI  143 (320)
Q Consensus        84 l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll  143 (320)
                      ..+.+|+++|+  .++.++..++++.++++.|.+++.+|+||.+++  .++|+++.+|++
T Consensus        54 ~~~~~V~~iMt--~~~itv~~~~~~~~a~~~M~~~~i~~LPVvd~~--klvGiit~~Dil  109 (111)
T cd04626          54 FLEKKVFNIVS--QDVFYVNEEDTIDEALDIMREKQIGRLPVVDDN--KLIGVVRTKDIL  109 (111)
T ss_pred             CCCCCHHHHCC--CCCEEECCCCCHHHHHHHHHHHCCCEEEEEECC--EEEEEEEHHHHC
T ss_conf             77888899606--998799997939999999998099889999999--999999969814


No 110
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation.   Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=98.08  E-value=3e-05  Score=54.28  Aligned_cols=120  Identities=17%  Similarity=0.192  Sum_probs=98.1

Q ss_pred             EEHHEEECC-CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf             764131200-1299986301036778979865981799841886642241029999987662235643223334576788
Q gi|254780426|r   88 RIDDIMISR-VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESN  166 (320)
Q Consensus        88 ~v~diMtPr-~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~  166 (320)
                      +|++||.-. +..+...++.++..|++++++.+.+.+-|.+... ...|+|.+.++-.+....            ..+.+
T Consensus       243 ~~~~i~~~~~~~~i~~t~~~gp~~Al~Lm~~~~~~s~yvv~~~~-~l~G~v~~~~~~~a~~~~------------~~~~~  309 (372)
T TIGR01186       243 DAERIAKRMNTVPITKTADKGPRSALKLMRDERVDSLYVVDRQN-KLVGVVDVESIKQARKKA------------QSLQD  309 (372)
T ss_pred             CHHHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCC-EEEEEEEHHHHHHHHHHH------------HHHHH
T ss_conf             88999965277326865898878999999865971799997285-488778588999888787------------78999


Q ss_pred             HC-CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHH
Q ss_conf             51-5657971788512323432013565116540776620466758899998742
Q gi|254780426|r  167 LI-KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRD  220 (320)
Q Consensus       167 ~~-r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGe  220 (320)
                      ++ ..++.|++.+.+.+++..--+..+....||||.-...||||..-++..+-|.
T Consensus       310 ~l~~~~~tV~~~t~L~e~~~~v~~~~~~YvpVVDE~~~~~GIv~r~~L~~~l~d~  364 (372)
T TIGR01186       310 VLIDDILTVDEGTLLRELLRKVLKAGIKYVPVVDEDQRLVGIVTRASLVDALYDS  364 (372)
T ss_pred             HHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHCC
T ss_conf             8620011105876048999998507995666661456458676477899987166


No 111
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein.  IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.08  E-value=4.7e-06  Score=59.54  Aligned_cols=61  Identities=13%  Similarity=0.169  Sum_probs=42.9

Q ss_pred             CCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHH
Q ss_conf             04775764131200129998630103677897986598179984188664224102999998
Q gi|254780426|r   83 RFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVIS  144 (320)
Q Consensus        83 ~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~  144 (320)
                      .-.+.++.++||++...++.+.+.+++++.+.|.++++.++||.+++. +++|+++.+|+++
T Consensus        53 ~~~~~~v~~iMt~~~~~i~~~~~~~l~ea~~~m~~~~i~~LPVVd~~g-~LvGiIT~~Di~k  113 (114)
T cd04602          53 TDSETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDG-ELVALVTRSDLKK  113 (114)
T ss_pred             CCCCCCCCCEEECCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-EEEEEEECHHHCC
T ss_conf             076765635165276689947987899999999974966781997899-6999999244036


No 112
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.07  E-value=5.1e-06  Score=59.32  Aligned_cols=48  Identities=13%  Similarity=0.257  Sum_probs=30.4

Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHH
Q ss_conf             6579717885123234320135651165407766204667588999987
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLM  218 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~iv  218 (320)
                      +++.+.+++++.++++.|++++.+..+|+|+ |.++|+||..|++..+.
T Consensus         2 ~viTv~p~~tl~~a~~~m~~~~i~~lpVvd~-~~lvGivT~~Di~~~~~   49 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAIS   49 (122)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHH
T ss_conf             7499889696999999998749988999989-99999988899998750


No 113
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.07  E-value=3.1e-06  Score=60.69  Aligned_cols=47  Identities=17%  Similarity=0.387  Sum_probs=25.4

Q ss_pred             CEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHH
Q ss_conf             57971788512323432013565116540776620466758899998
Q gi|254780426|r  171 ILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVL  217 (320)
Q Consensus       171 ~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~i  217 (320)
                      ++.|++++++.++++.|.+++.+-++|+|+.|.++||||..||+..+
T Consensus         3 Vitv~p~~tl~ea~~~m~~~~i~~lpVvd~~g~lvGivT~~Dl~~~~   49 (135)
T cd04621           3 IATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAE   49 (135)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHH
T ss_conf             68989949799999999874997799995999399999879988666


No 114
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.07  E-value=2.3e-05  Score=54.99  Aligned_cols=52  Identities=17%  Similarity=0.303  Sum_probs=47.8

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHH
Q ss_conf             5657971788512323432013565116540776620466758899998742
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRD  220 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGe  220 (320)
                      |+++.+++++++.++++.|++++.+..+|+|+.|.++|++|..|++..+...
T Consensus         2 rdvvtv~~~~tl~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dll~~~~~~   53 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPD   53 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEHHHHHHHHHCC
T ss_conf             8969989939799999999972997899995698088885699999877504


No 115
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.05  E-value=2.7e-05  Score=54.52  Aligned_cols=53  Identities=21%  Similarity=0.358  Sum_probs=48.0

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHH
Q ss_conf             56579717885123234320135651165407766204667588999987422
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDI  221 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei  221 (320)
                      .|++.+++++++.++++.|.+++.+..+|+|+.|.++|+||..|++..+....
T Consensus         1 sPvvtv~~~~tl~~a~~~m~~~~i~~lpVvd~~~~lvGiit~~Dil~~~~~~~   53 (122)
T cd04803           1 SPVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSL   53 (122)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHCC
T ss_conf             99199989699999999999749978999908986888965999999998437


No 116
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.04  E-value=2.2e-05  Score=55.13  Aligned_cols=49  Identities=16%  Similarity=0.190  Sum_probs=39.6

Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHH
Q ss_conf             6579717885123234320135651165407766204667588999987
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLM  218 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~iv  218 (320)
                      +|+++++++++.++++.|.+++.+.++|+|+.|.+.|++|..|++..+.
T Consensus         2 ~P~tv~~d~~l~~A~~~m~~~~~~~~pVvd~~~~lvGivT~~Di~~~~~   50 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYAL   50 (113)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHH
T ss_conf             5959899699999999999739978999948997999999599999998


No 117
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.04  E-value=2.5e-05  Score=54.82  Aligned_cols=57  Identities=21%  Similarity=0.268  Sum_probs=50.0

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHC
Q ss_conf             565797178851232343201356511654077662046675889999874222100
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEH  225 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~  225 (320)
                      |+++++.+++++.++++.|.+++..-+.|||+.|.++|++|..|++..+.+...+..
T Consensus         1 r~Vitv~pd~~l~da~~lm~~~~is~lPVVD~~g~lvGiis~~Dl~~~~~~~~~~~~   57 (120)
T cd04641           1 KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNL   57 (120)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCC
T ss_conf             997898998999999999998098669998789969899759999988751554434


No 118
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.01  E-value=8.6e-06  Score=57.81  Aligned_cols=56  Identities=21%  Similarity=0.324  Sum_probs=46.5

Q ss_pred             CCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHH
Q ss_conf             775764131200129998630103677897986598179984188664224102999998
Q gi|254780426|r   85 RKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVIS  144 (320)
Q Consensus        85 ~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~  144 (320)
                      ...+++++|+  .++.++..+++++++++.|.++++.|+||.+++  +++|+++.+|++.
T Consensus        48 ~~~~v~d~Mt--~~v~tv~p~~~l~ea~~lM~~~~i~~lPVvd~g--klvGIIT~~Dil~  103 (104)
T cd04594          48 TYGDVVDYIV--RGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDDG--KFKGIVTLDSILD  103 (104)
T ss_pred             CCCCHHHEEE--CCCEEECCCCCHHHHHHHHHHCCCCEEEEEECC--EEEEEEEHHHHHC
T ss_conf             6998445476--398889998979999999998697878999899--9999999689537


No 119
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.00  E-value=1.8e-05  Score=55.76  Aligned_cols=85  Identities=22%  Similarity=0.358  Sum_probs=62.8

Q ss_pred             CCCEEECCCCCHHHHHHHHHCC-CCCCEEEEECCCCCEEEEEHHHHHHHHHHHHH-HHCCCHHHCCCCCCCCEEEEECCC
Q ss_conf             5657971788512323432013-56511654077662046675889999874222-100000000124677337830453
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQES-RIRMALVIDEHGGTDGLVSYEDIVSVLMRDIT-SEHHSKKSMISAVSDNTFIVDART  246 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~-~~~~aiVvDE~G~~~GiVTleDIle~ivGei~-de~d~~~~~i~~~~~g~~~v~G~~  246 (320)
                      ||+..+++++++.++++.|+++ ..+..+|+|+ |..+|+||..|+++.+.+.+. +.+.. .+--.-....-..++..+
T Consensus         1 rpv~tv~pd~t~~ev~~~f~~~~~i~~lpVvd~-~r~vGiisr~dl~~~~~~~~g~~l~~~-~pV~~~M~~~p~~v~~~~   78 (119)
T cd04598           1 RPAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRALYGK-KPVSEVMDPDPLIVEADT   78 (119)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEC-CEEEEEEEHHHHHHHHCCCCCHHHHCC-CCHHHHCCCCCEEECCCC
T ss_conf             998574999849999999987899676899879-988999989999998707432233038-958997168987998989


Q ss_pred             CHHHHHHHH
Q ss_conf             599999982
Q gi|254780426|r  247 DLEELAKII  255 (320)
Q Consensus       247 ~l~~l~~~l  255 (320)
                      +++++.+.+
T Consensus        79 ~i~~~~~~~   87 (119)
T cd04598          79 PLEEVSRLA   87 (119)
T ss_pred             CHHHHHHHH
T ss_conf             699999999


No 120
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.99  E-value=2.9e-05  Score=54.30  Aligned_cols=50  Identities=20%  Similarity=0.267  Sum_probs=46.8

Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHH
Q ss_conf             65797178851232343201356511654077662046675889999874
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMR  219 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivG  219 (320)
                      ++.++.++.++.++++.|++++.+-.+|+|+.|.++|+||..|++..+.+
T Consensus         2 ~Vvtv~~~~tl~~A~~~m~~~~i~~lPVvd~~gklvGiit~~Di~~~~~~   51 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKG   51 (116)
T ss_pred             CEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHHC
T ss_conf             76999994929999999997499879898699949999889999998743


No 121
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.99  E-value=4.4e-05  Score=53.17  Aligned_cols=51  Identities=22%  Similarity=0.306  Sum_probs=46.4

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEEC-CCCCEEEEEHHHHHHHHHH
Q ss_conf             56579717885123234320135651165407-7662046675889999874
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDE-HGGTDGLVSYEDIVSVLMR  219 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE-~G~~~GiVTleDIle~ivG  219 (320)
                      .|.+.|+++.++.++++.|.+++.|..+|+|+ .|.++||||..||++.+..
T Consensus         1 ~Pfi~v~~~~sl~~a~~lm~~~~i~rlpVvd~~~g~lvGIiT~~dil~~l~~   52 (123)
T cd04627           1 EPFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWE   52 (123)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEHHHHHHHHHH
T ss_conf             9964848989299999999749977799995899949999997999999986


No 122
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in  the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms.  They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.97  E-value=3.3e-05  Score=53.98  Aligned_cols=49  Identities=22%  Similarity=0.436  Sum_probs=39.3

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHH
Q ss_conf             5657971788512323432013565116540776620466758899998
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVL  217 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~i  217 (320)
                      |+++.|++++++.++++.|++++.+.++|+|+.|.+.|++|..|++...
T Consensus         1 r~vvtv~~~~sl~~a~~lm~~~~~~~lpVvd~~~~lvGiit~~Di~~~~   49 (121)
T cd04584           1 RDVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDAS   49 (121)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHH
T ss_conf             9988968929899999999972998899990899399996589987522


No 123
>KOG1764 consensus
Probab=97.95  E-value=0.00011  Score=50.45  Aligned_cols=185  Identities=15%  Similarity=0.126  Sum_probs=120.9

Q ss_pred             CCHHHHHHHHHHHCCCCEEE--HHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHH
Q ss_conf             89899999998730477576--4131200129998630103677897986598179984188664224102999998766
Q gi|254780426|r   70 FSETEKEIFNNILRFRKIRI--DDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYIS  147 (320)
Q Consensus        70 i~~~E~~ii~~vl~l~~~~v--~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~  147 (320)
                      ...+....+....-...+.+  ..-++++...+++....+.-++...+.++++.|+||.+...-++..++..+-++.++.
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~  212 (381)
T KOG1764         133 SSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLW  212 (381)
T ss_pred             CCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             75677765302201455124432104446774130786889997764235772475233656554211120999999998


Q ss_pred             HCCCCCCCCCCCCCCCHHHH----CCCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHH
Q ss_conf             22356432233345767885----15657971788512323432013565116540776620466758899998742221
Q gi|254780426|r  148 HMYAKTNNINLNIQLSESNL----IKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITS  223 (320)
Q Consensus       148 ~~~~~~~~~~~~~~~~l~~~----~r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~d  223 (320)
                      ....... ...-...++.++    ...+.++.+++++.++++.|..++..-..|||++|+.+|.++..|+.-.+...-.+
T Consensus       213 ~~~~~~~-~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~  291 (381)
T KOG1764         213 LNGRLLP-LPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYN  291 (381)
T ss_pred             HCCCCCC-CHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEECCCCCEECCEEEEHHHHHHHCCCCC
T ss_conf             5145644-224551887664047787777751787089999999870457443475778553215620012156427767


Q ss_pred             HCCCH---H-HCC-CCCCCCEEEEECCCCHHHHHHHH
Q ss_conf             00000---0-001-24677337830453599999982
Q gi|254780426|r  224 EHHSK---K-SMI-SAVSDNTFIVDARTDLEELAKII  255 (320)
Q Consensus       224 e~d~~---~-~~i-~~~~~g~~~v~G~~~l~~l~~~l  255 (320)
                      -.+..   + ... ....++.+.|.-.-++..+-+.+
T Consensus       292 ~~~~~~l~~~~~~~~~~~~~vvtc~~~ssL~~vi~~l  328 (381)
T KOG1764         292 NLDLSCLSEALSHRPIRFEGVVTCRPTSTLAEVIDKL  328 (381)
T ss_pred             CCCHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHH
T ss_conf             7773242135331554568737984377499999999


No 124
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.94  E-value=1.5e-05  Score=56.31  Aligned_cols=49  Identities=14%  Similarity=0.162  Sum_probs=32.2

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHH
Q ss_conf             56579717885123234320135651165407766204667588999987
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLM  218 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~iv  218 (320)
                      .|++.+++++++.++++.|.+++.+-++|+|. |.+.|++|..|++..+.
T Consensus         2 spV~ti~p~~tv~ea~~~m~~~~i~~lpVvd~-~~lvGivT~~Di~~~~~   50 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALR   50 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEEEC-CEEEEEEEHHHHHHHHH
T ss_conf             89899799599999999999759988999989-99999997689887765


No 125
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein.  These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.94  E-value=1.2e-05  Score=56.88  Aligned_cols=83  Identities=17%  Similarity=0.246  Sum_probs=51.4

Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCCHH
Q ss_conf             65797178851232343201356511654077662046675889999874222100000000124677337830453599
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDLE  249 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~l~  249 (320)
                      .+++|.+++++.+++..|.+++.+.++|+|+.|.+.|++|..||...+......... .-..+-  ...-+.+....++.
T Consensus         3 ~vp~V~~~~si~ea~~~m~~~~~~~v~Vvd~~~~lvGiiT~~Dl~r~~~~~~~~~~~-~v~~iM--~~~~~tv~~~~~i~   79 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLDILTL-PVADVM--TRNPKTIDPDALAA   79 (114)
T ss_pred             CCCEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHHCCCCCCCC-CHHHHH--CCCCEEEECCCCHH
T ss_conf             477889949399999999976997899997999399999899999998716664567-974743--56758993898869


Q ss_pred             HHHHHH
Q ss_conf             999982
Q gi|254780426|r  250 ELAKII  255 (320)
Q Consensus       250 ~l~~~l  255 (320)
                      +..+.+
T Consensus        80 ~a~~~m   85 (114)
T cd04604          80 EALELM   85 (114)
T ss_pred             HHHHHH
T ss_conf             999999


No 126
>PRK07107 inositol-5-monophosphate dehydrogenase; Validated
Probab=97.94  E-value=1.2e-05  Score=56.76  Aligned_cols=63  Identities=16%  Similarity=0.078  Sum_probs=57.2

Q ss_pred             CEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHC
Q ss_conf             7576413120012999863010367789798659817998418866422410299999876622
Q gi|254780426|r   86 KIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHM  149 (320)
Q Consensus        86 ~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~  149 (320)
                      +.+|+++|||+.++++.+...+++|+.+++.+++..++||.+++. +++|+++.||+.......
T Consensus       160 ~~~V~~vMT~~~~Lvt~~~g~sl~eA~~lL~~~kiekLpvVd~~g-~L~gLiT~kDi~k~~~~P  222 (497)
T PRK07107        160 DTKVKDFMTPFEKLVVAKVGITLKEANNIIWDHKLNTLPIIDKNQ-HLVYMVFRKDYDSHKENP  222 (497)
T ss_pred             CCCHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCEEEECCCC-CEEEEEEHHHHHHHHHCC
T ss_conf             776656406765427846889999999999863444302783799-589999837888864396


No 127
>KOG0475 consensus
Probab=97.94  E-value=4.2e-05  Score=53.31  Aligned_cols=130  Identities=12%  Similarity=0.141  Sum_probs=94.2

Q ss_pred             CEEEHHEEECCC-E--EEEEEE-CCCHHHHHHHHHHCCCCEEEEE-CCCCCCCCCCEEHHHHHHHHHHCCCCCC------
Q ss_conf             757641312001-2--999863-0103677897986598179984-1886642241029999987662235643------
Q gi|254780426|r   86 KIRIDDIMISRV-S--INAVED-KATVYEAMLMFEKYGRSWMPVY-KNSLDNPRGMVHMRDVISYISHMYAKTN------  154 (320)
Q Consensus        86 ~~~v~diMtPr~-~--i~~i~~-~~~~~e~~~~i~~~~~sR~PV~-~~~~d~iiGiv~~kDll~~~~~~~~~~~------  154 (320)
                      +.-+.++|-|+. +  ...+.. +.+++++...+.++.|+-|||. +++....+|++..+|+...+........      
T Consensus       542 ~t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~  621 (696)
T KOG0475         542 STLAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTS  621 (696)
T ss_pred             CCHHHHHHCHHCCCHHHEECCCCCEEHHHHHHHHHHCCCCCCEEEECCCCCEEEEEECHHHHHHHHHHHCCCCCCCEECC
T ss_conf             20334431310176222120556516899988886244278527971564226788715788898865300565413111


Q ss_pred             ----------CCCCCCCCCHHHHCCC-CEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             ----------2233345767885156-5797178851232343201356511654077662046675889999
Q gi|254780426|r  155 ----------NINLNIQLSESNLIKN-ILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       155 ----------~~~~~~~~~l~~~~r~-~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                                .........+++++.. |..|-..++...++..|++-... -+.|++.|...|+||-.|++..
T Consensus       622 ~~f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~-~~~v~~~G~l~Giitkkd~l~~  693 (696)
T KOG0475         622 IYFNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLR-QILVTKNGILLGIITKKDCLRH  693 (696)
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCE-EEEECCCCEEEEEEEHHHHHHH
T ss_conf             33678874345899987576320468760343458489999999861725-8998159826766534898886


No 128
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.94  E-value=8.1e-06  Score=57.97  Aligned_cols=50  Identities=26%  Similarity=0.444  Sum_probs=40.2

Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHH
Q ss_conf             65797178851232343201356511654077662046675889999874
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMR  219 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivG  219 (320)
                      .+++|++++++.+++..|++++.+-.+|+|+.|.+.|+||..|++..++.
T Consensus         2 dvvTv~~~~~l~~a~~lm~~~~i~~lPVvd~~g~lvGiiT~~Dl~~~~~~   51 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVR   51 (128)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHC
T ss_conf             98698995929999999998399779999689978999988999998853


No 129
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream.   The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives.  The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds.  CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.93  E-value=2.3e-05  Score=54.98  Aligned_cols=86  Identities=19%  Similarity=0.262  Sum_probs=63.5

Q ss_pred             CCCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCC
Q ss_conf             15657971788512323432013565116540776620466758899998742221000000001246773378304535
Q gi|254780426|r  168 IKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTD  247 (320)
Q Consensus       168 ~r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~  247 (320)
                      +.||+.|.++.++.++++.|++++..-..|+|+.|.+.|+||..|++..++..-....+.-..   -.....-.+....+
T Consensus         1 l~~~vtv~p~~tv~~a~~~m~~~~i~~lPVvd~~g~~~G~vt~~~ll~~~~~~~~~~~~~V~~---vm~~~~~~v~~~~~   77 (124)
T cd04608           1 LKAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSK---ALYKQFKRVNKNDT   77 (124)
T ss_pred             CCCCEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCHHH---HHCCCCCCCCCCCC
T ss_conf             999979899890999999999849985689879996888887999999997389999982899---74465651479985


Q ss_pred             HHHHHHHHC
Q ss_conf             999999828
Q gi|254780426|r  248 LEELAKIIG  256 (320)
Q Consensus       248 l~~l~~~l~  256 (320)
                      +..+.+.+.
T Consensus        78 l~~ls~~l~   86 (124)
T cd04608          78 LGKLSRILE   86 (124)
T ss_pred             HHHHHCCCC
T ss_conf             567310367


No 130
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain.  Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.93  E-value=3.6e-05  Score=53.72  Aligned_cols=83  Identities=13%  Similarity=0.215  Sum_probs=54.7

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCCH
Q ss_conf             56579717885123234320135651165407766204667588999987422210000000012467733783045359
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDL  248 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~l  248 (320)
                      |||+.+++++++.++++.|.+++.+-++|+|+ |.+.|++|..|++..+...-.+... .-..+  .....+.++...++
T Consensus         1 r~~vtv~~~~tv~ea~~~m~~~~i~~v~V~~~-~~~vGiit~~Di~~~~~~~~~~~~~-~v~~i--m~~~~~tv~~~~~l   76 (111)
T cd04800           1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGLDPDT-PVSEV--MTAPPITIPPDATV   76 (111)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEECHHHHHHHHCCCCCCC-CHHHH--CCCCCEEEECCCCH
T ss_conf             99989789197999999999729998999989-9999999955788998716798566-58885--12681799889919


Q ss_pred             HHHHHHH
Q ss_conf             9999982
Q gi|254780426|r  249 EELAKII  255 (320)
Q Consensus       249 ~~l~~~l  255 (320)
                      .+..+.+
T Consensus        77 ~~a~~~m   83 (111)
T cd04800          77 FEALLLM   83 (111)
T ss_pred             HHHHHHH
T ss_conf             9999999


No 131
>pfam00571 CBS CBS domain. CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP.
Probab=97.93  E-value=1.3e-05  Score=56.63  Aligned_cols=49  Identities=27%  Similarity=0.489  Sum_probs=43.5

Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHH
Q ss_conf             6579717885123234320135651165407766204667588999987
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLM  218 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~iv  218 (320)
                      ++.++++++++.+++..|++.+.+.++|+|+.|...|+||..|++..+.
T Consensus         8 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvit~~dl~~~~~   56 (57)
T pfam00571         8 DVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALL   56 (57)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHC
T ss_conf             9989979090999999998539957999927994999997899999866


No 132
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.92  E-value=1.1e-05  Score=57.05  Aligned_cols=46  Identities=20%  Similarity=0.398  Sum_probs=29.6

Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             6579717885123234320135651165407766204667588999
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      .+.++.+++++.++++.|++++.+-.+|+|+.|.++|+||..|++.
T Consensus         2 dvvtv~~~~tv~ea~~lm~~~~i~~lpVvd~~~~lvGivT~~Dl~~   47 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLR   47 (106)
T ss_pred             CCEEECCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEEEHHHHHH
T ss_conf             9899999496999999999769998999938999999989789644


No 133
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.92  E-value=1.7e-05  Score=55.79  Aligned_cols=58  Identities=17%  Similarity=0.344  Sum_probs=42.1

Q ss_pred             CCCCCCHHHHC-CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             33457678851-56579717885123234320135651165407766204667588999
Q gi|254780426|r  158 LNIQLSESNLI-KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       158 ~~~~~~l~~~~-r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      ......+++++ +++..+++++++.++++.|++++.+-..|||+.|.+.||||+.||-|
T Consensus        54 ~~v~~qV~DIm~~~~vti~~~~sl~eA~~lM~e~~i~~LPVVD~~g~l~GiIT~~DIAe  112 (113)
T cd04597          54 ADVHPRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             CCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf             15650566631378834199982999999999849987869889993999987787435


No 134
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50.  CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.90  E-value=1.4e-05  Score=56.50  Aligned_cols=84  Identities=17%  Similarity=0.298  Sum_probs=45.6

Q ss_pred             CCCEEECCCCCHHHHHHHH-HCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCC
Q ss_conf             5657971788512323432-013565116540776620466758899998742221000000001246773378304535
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNI-QESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTD  247 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m-~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~  247 (320)
                      |.+..||+++++.++++.| .+.+.+..+|+|+.|.+.|+||..|+......+-.   +..-..+.........+.-..+
T Consensus         1 Rdv~tv~~~~tl~e~~~~~~~~~~~~~~pVvd~~g~l~Givt~~dl~~~~~~~~~---~~~v~~v~~~~~~~~~v~~~~~   77 (114)
T cd04801           1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQWA---QTTVIQVMTPAAKLVTVLSEES   77 (114)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHHHHHHHCCC---CCCHHHHCCCCCCCEEECCCCC
T ss_conf             9955849999599999999850796689998789979999999998754540256---8847782102778758999997


Q ss_pred             HHHHHHHH
Q ss_conf             99999982
Q gi|254780426|r  248 LEELAKII  255 (320)
Q Consensus       248 l~~l~~~l  255 (320)
                      +.+.-+.|
T Consensus        78 l~~al~~m   85 (114)
T cd04801          78 LAEVLKLL   85 (114)
T ss_pred             HHHHHHHH
T ss_conf             99999999


No 135
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain.  Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.90  E-value=5.3e-05  Score=52.65  Aligned_cols=81  Identities=17%  Similarity=0.335  Sum_probs=53.4

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCCH
Q ss_conf             56579717885123234320135651165407766204667588999987422210000000012467733783045359
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDL  248 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~l  248 (320)
                      |++..+++++++.++++.|++++.+.++|+|+ |.+.|++|..|++..+......   ..-..+  ....-+.++...++
T Consensus         1 r~vvtv~p~~sl~ea~~~m~~~~i~~~pVvd~-~~lvGiit~~Di~~~~~~~~~~---~~V~~~--M~~~~~tv~~d~~l   74 (110)
T cd04588           1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLEL---AKVKDV--MTKDVITIDEDEQL   74 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEEEC-CEEEEEEEHHHHHHHHHCCCCC---CHHHHH--CCCCCCEECCCCCH
T ss_conf             99479689498999999999709988999989-9999999668989998737977---803452--04897298589969


Q ss_pred             HHHHHHH
Q ss_conf             9999982
Q gi|254780426|r  249 EELAKII  255 (320)
Q Consensus       249 ~~l~~~l  255 (320)
                      .+..+.|
T Consensus        75 ~~~~~~m   81 (110)
T cd04588          75 YDAIRLM   81 (110)
T ss_pred             HHHHHHH
T ss_conf             9999999


No 136
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.88  E-value=1.2e-05  Score=56.97  Aligned_cols=57  Identities=21%  Similarity=0.453  Sum_probs=40.1

Q ss_pred             CCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHH
Q ss_conf             0477576413120012999863010367789798659817998418866422410299999
Q gi|254780426|r   83 RFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVI  143 (320)
Q Consensus        83 ~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll  143 (320)
                      +..+.+|+++|++  ++.+++.++++.++++.+.++++.++||.+++  +++|+++..|++
T Consensus        54 ~~~~~~v~~iM~~--~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~~--~lvGiIt~~Dil  110 (112)
T cd04802          54 KPREVPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVDDD--ELVGIVTTTDIV  110 (112)
T ss_pred             CCCCCCHHHHHCC--CCEEECCCCHHHHHHHHHHHHCCCEEEEEECC--EEEEEEECHHHC
T ss_conf             8123899997234--85599479869999998787198589999899--999999806710


No 137
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.88  E-value=7.5e-05  Score=51.66  Aligned_cols=94  Identities=17%  Similarity=0.218  Sum_probs=83.5

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCEEECCC
Q ss_conf             29998630103677897986598179984188664224102999998766223564322333457678851565797178
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVPSS  177 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r~~~~Vpe~  177 (320)
                      .++.+|.+.++..+...+.++|+.--|+++....+.+|++++-|.+..+.                       .+.+.+.
T Consensus         2 kliV~D~~l~vk~Af~al~~ngi~~aplWds~~~~fvGmLt~~DfI~il~-----------------------lv~i~P~   58 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-----------------------LVSIHPE   58 (98)
T ss_pred             EEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEHHHHHHHHH-----------------------HEECCCC
T ss_conf             09999489758999999998692699987288767888864799998876-----------------------2444876


Q ss_pred             CCHHHHHHHHHCCCCCCEEEEECC-CCCEEEEEHHHHH
Q ss_conf             851232343201356511654077-6620466758899
Q gi|254780426|r  178 MLVSDLLTNIQESRIRMALVIDEH-GGTDGLVSYEDIV  214 (320)
Q Consensus       178 ~~l~~lL~~m~~~~~~~aiVvDE~-G~~~GiVTleDIl  214 (320)
                      .++.++.+.|.+++.|..+|+|.. |...-++|...++
T Consensus        59 ~sL~da~~~l~~~~ihrlPvid~~~~~~~~ilt~~~il   96 (98)
T cd04618          59 RSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRIL   96 (98)
T ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHEE
T ss_conf             12999999998678750521647999658999630201


No 138
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.86  E-value=2.4e-05  Score=54.86  Aligned_cols=47  Identities=30%  Similarity=0.466  Sum_probs=35.7

Q ss_pred             CEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHH
Q ss_conf             57971788512323432013565116540776620466758899998
Q gi|254780426|r  171 ILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVL  217 (320)
Q Consensus       171 ~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~i  217 (320)
                      +..+++++++.++++.|++++.+-.+|||+.|.++||||..||+..+
T Consensus         2 ~itv~~~~~v~~a~~~m~~~~i~~lPVVd~~~~lvGiit~~Dil~~l   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             CEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHHHHHH
T ss_conf             86999879299999999980998576998999199998879999864


No 139
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in  the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms.  They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.86  E-value=1.7e-05  Score=55.95  Aligned_cols=50  Identities=26%  Similarity=0.305  Sum_probs=34.7

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHH
Q ss_conf             565797178851232343201356511654077662046675889999874
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMR  219 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivG  219 (320)
                      |.|+++++++++.++++.|++++.+..+|+| .|.+.|+||..|++..+..
T Consensus         1 rdpvti~~~~tl~ea~~~m~~~~~~~lpVvd-~~~lvGiit~~Di~~~~~~   50 (122)
T cd04585           1 KNPITVTPDTSLMEALKLMKENSIRRLPVVD-RGKLVGIVTDRDLKLASPS   50 (122)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEEHHHHHHHHHC
T ss_conf             9989968929699999999973998899998-9999999988999987750


No 140
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.85  E-value=7.4e-05  Score=51.68  Aligned_cols=50  Identities=20%  Similarity=0.271  Sum_probs=42.5

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHH
Q ss_conf             56579717885123234320135651165407766204667588999987
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLM  218 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~iv  218 (320)
                      |.|+.+++++++.+++..|.+++..-++|||+.|.+.||+|-.|++..+.
T Consensus         1 r~pitv~pd~tv~ea~~~M~~~~~~~~~vV~~~~~lvGIvT~~Di~r~~~   50 (115)
T cd04620           1 RHPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTA   50 (115)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHH
T ss_conf             96999699199999999999839946999937992999998699999998


No 141
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.85  E-value=7.1e-05  Score=51.82  Aligned_cols=49  Identities=18%  Similarity=0.195  Sum_probs=42.9

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHH
Q ss_conf             5657971788512323432013565116540776620466758899998
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVL  217 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~i  217 (320)
                      |.++++.+++++.++++.|.+++..-.+|+|+.|.++|+||..|++...
T Consensus         1 r~vitv~~d~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiit~~Dll~~~   49 (122)
T cd04635           1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAG   49 (122)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEHHHHHHHH
T ss_conf             9999968929799999999971994899991898299999989987655


No 142
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC.  SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus).  SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB.  It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.84  E-value=2.2e-05  Score=55.14  Aligned_cols=81  Identities=20%  Similarity=0.281  Sum_probs=48.1

Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCCHH
Q ss_conf             65797178851232343201356511654077662046675889999874222100000000124677337830453599
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDLE  249 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~l~  249 (320)
                      .++++++++++.++++.|++++..-.+|+|+ |.+.|+||..|++..+..+-...    .....-....-..++...++.
T Consensus         2 dvvtv~p~~tl~~a~~~m~~~~~~~lpVvd~-~~l~Givt~~di~~~~~~~~~~~----~~v~~im~~~~~~v~~~~~l~   76 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREAT----VLVGDVMTRDPVTASPDETLR   76 (111)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHHCCCCCC----CEEEEEECCCCCCCCCCCCHH
T ss_conf             8499999295999999999719948999999-99999998999998775147777----569999707960529999799


Q ss_pred             HHHHHH
Q ss_conf             999982
Q gi|254780426|r  250 ELAKII  255 (320)
Q Consensus       250 ~l~~~l  255 (320)
                      +..+.|
T Consensus        77 ~a~~~m   82 (111)
T cd04612          77 DALKRM   82 (111)
T ss_pred             HHHHHH
T ss_conf             999999


No 143
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains.  It has been proposed that the CB
Probab=97.84  E-value=2.6e-05  Score=54.69  Aligned_cols=47  Identities=30%  Similarity=0.533  Sum_probs=23.0

Q ss_pred             CEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHH
Q ss_conf             579717885123234320135651165407766204667588999987
Q gi|254780426|r  171 ILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLM  218 (320)
Q Consensus       171 ~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~iv  218 (320)
                      ++.+++++++.++++.|++++.+..+|+|+ |+..|++|..|++..+.
T Consensus         3 vvTv~p~~tv~ea~~~m~~~~i~~~~V~~~-~~~vGiiT~~Di~~~~~   49 (111)
T cd04611           3 ILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLA   49 (111)
T ss_pred             CEEECCCCCHHHHHHHHHHHCCCEEEEEEC-CEEEEEEEEHHHHHHHH
T ss_conf             199889697999999999719988999979-99999998559899874


No 144
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.84  E-value=9.7e-05  Score=50.91  Aligned_cols=52  Identities=23%  Similarity=0.359  Sum_probs=44.0

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEEC-CCCCEEEEEHHHHHHHHHHH
Q ss_conf             56579717885123234320135651165407-76620466758899998742
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDE-HGGTDGLVSYEDIVSVLMRD  220 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE-~G~~~GiVTleDIle~ivGe  220 (320)
                      |+++++++++++.++++.|++++.+-++|+|+ .|.+.|++|..|++..+.+.
T Consensus         1 r~vvtv~~~~tl~ea~~~m~~~~v~~~PVvd~~~~~lvGiit~~Di~~~~~~~   53 (125)
T cd04631           1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGG   53 (125)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEHHHHHHHHHCC
T ss_conf             99779799094999999999839988999979999599999999999987335


No 145
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown.  In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.83  E-value=6e-05  Score=52.27  Aligned_cols=50  Identities=20%  Similarity=0.363  Sum_probs=44.4

Q ss_pred             CCCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHH
Q ss_conf             15657971788512323432013565116540776620466758899998
Q gi|254780426|r  168 IKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVL  217 (320)
Q Consensus       168 ~r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~i  217 (320)
                      +|.|+.+.+++++.++++.|++++.+.++|+|+.|.+.|+||..||....
T Consensus         1 ~r~pitv~~~~tv~eal~~m~~~~~~~l~Vvd~~~~lvGivt~~di~~~~   50 (109)
T cd04583           1 IKNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY   50 (109)
T ss_pred             CCCCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCEEEEEEEHHHHHHCC
T ss_conf             99899979939799999999973997899995899899999810434300


No 146
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.82  E-value=1.3e-05  Score=56.57  Aligned_cols=45  Identities=27%  Similarity=0.417  Sum_probs=28.3

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHH
Q ss_conf             5657971788512323432013565116540776620466758899
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIV  214 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIl  214 (320)
                      |+++.+++++++.++++.|++++.+-.+|+| .|.++|+||..|++
T Consensus         2 kdvvtv~~d~tv~ea~~~m~~~~~~~~pVvd-~~~lvGivt~~Dll   46 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVD-NGKVVGIVSARDLL   46 (107)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEEE-CCEEEEEEEHHHHC
T ss_conf             8809989929599999999975997899998-99999988764531


No 147
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.82  E-value=2.2e-05  Score=55.19  Aligned_cols=49  Identities=33%  Similarity=0.407  Sum_probs=35.9

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHH
Q ss_conf             56579717885123234320135651165407766204667588999987
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLM  218 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~iv  218 (320)
                      |.|+++.+++++.++++.|++++.+-++|+|+ |.++|+||..|++..+.
T Consensus         1 kdvvTv~~d~~l~ea~~~m~~~~i~~lPVvd~-~~lvGivT~~Dil~~~~   49 (143)
T cd04634           1 KNPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLV   49 (143)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEEEC-CEEEEEEEHHHHHHHHH
T ss_conf             99889589398999999999749977999979-99999998699998875


No 148
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine.  It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.79  E-value=3.6e-05  Score=53.70  Aligned_cols=50  Identities=20%  Similarity=0.298  Sum_probs=46.3

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHH
Q ss_conf             56579717885123234320135651165407766204667588999987
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLM  218 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~iv  218 (320)
                      |+++.+.+++++.++++.|++++.+.++|+|+.|.+.|++|..|++..+.
T Consensus         2 r~vvtv~~~~tv~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~Di~~~~~   51 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA   51 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEECHHHHHHHH
T ss_conf             89989899399999999999729988999979991999996227888987


No 149
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually 
Probab=97.79  E-value=0.00013  Score=50.15  Aligned_cols=48  Identities=19%  Similarity=0.333  Sum_probs=44.1

Q ss_pred             CEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHH
Q ss_conf             579717885123234320135651165407766204667588999987
Q gi|254780426|r  171 ILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLM  218 (320)
Q Consensus       171 ~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~iv  218 (320)
                      -+.|++++++.+++..|..++++.++|||+.|.++||||..||...+.
T Consensus         3 ~vtV~p~ttv~EA~~lM~~~~~~~~~VVD~~~~L~GIvt~gDi~R~~~   50 (133)
T cd04592           3 YIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLF   50 (133)
T ss_pred             EEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHHHHHHH
T ss_conf             599899985999999999818865799838997899978799999987


No 150
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.77  E-value=2.1e-05  Score=55.23  Aligned_cols=47  Identities=19%  Similarity=0.246  Sum_probs=40.5

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             56579717885123234320135651165407766204667588999
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                      ..+.|+.++.++.++++.|++++.+-.+|+|+.|.++|+||..|++.
T Consensus         2 ~dv~~l~p~~tv~~a~~lm~~~~~~~~PVvd~~~~lvGivt~~Di~~   48 (108)
T cd04596           2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAG   48 (108)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEEEHHHHHH
T ss_conf             98889899997999999999859988999968990999999799751


No 151
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.77  E-value=0.00014  Score=49.78  Aligned_cols=50  Identities=16%  Similarity=0.244  Sum_probs=37.3

Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHH
Q ss_conf             65797178851232343201356511654077662046675889999874
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMR  219 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivG  219 (320)
                      ....+++++++.++++.|.+.+.+..+|+|+.|.+.|+||..|++..+.+
T Consensus         2 ~~~Tv~p~~tl~~a~~~~~~~~~~~~PVvd~~g~lvGivt~~di~~~l~~   51 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAE   51 (111)
T ss_pred             CCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEHHHHHHHHHC
T ss_conf             88792998979999999997199789999389988999989999999872


No 152
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream.  CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.76  E-value=0.00011  Score=50.45  Aligned_cols=82  Identities=24%  Similarity=0.393  Sum_probs=52.9

Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCCHH
Q ss_conf             65797178851232343201356511654077662046675889999874222100000000124677337830453599
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDLE  249 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~l~  249 (320)
                      .|++|++++++.+++..|.+++...++|+|+.|.+.|++|-.|+...+.....-  +..-..+-  ...-..+....++.
T Consensus         3 kpi~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~l~GiiT~~Di~r~l~~~~~~--~~~v~~im--~~~~~~i~~~~~~~   78 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLSL--DDPVSEVM--NRNPITAKVGSSRE   78 (113)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEECHHHHHHHHCCCCC--CCCHHHHH--CCEEEEEECCCCHH
T ss_conf             688969949899999999875997899997999599999872776687628984--56156752--12129998799899


Q ss_pred             HHHHHH
Q ss_conf             999982
Q gi|254780426|r  250 ELAKII  255 (320)
Q Consensus       250 ~l~~~l  255 (320)
                      +..+.+
T Consensus        79 ~a~~~m   84 (113)
T cd04607          79 EILALM   84 (113)
T ss_pred             HHHHHH
T ss_conf             999999


No 153
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein.  IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.74  E-value=3.9e-05  Score=53.51  Aligned_cols=47  Identities=26%  Similarity=0.361  Sum_probs=37.9

Q ss_pred             CCCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHH
Q ss_conf             15657971788512323432013565116540776620466758899
Q gi|254780426|r  168 IKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIV  214 (320)
Q Consensus       168 ~r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIl  214 (320)
                      +|.|+.+++++++.++++.|.+++.+..+|+|+.|.+.|++|..|+.
T Consensus         1 irdvvtv~~~~sl~~a~~~m~~~~~~~~pVvd~~~~l~Giit~~Dl~   47 (110)
T cd04601           1 IRDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLR   47 (110)
T ss_pred             CCCCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCEEEEEEEHHHHH
T ss_conf             98898979939699999999984998899994899698788776776


No 154
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream.   The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives.  The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds.  CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.72  E-value=0.00015  Score=49.72  Aligned_cols=82  Identities=18%  Similarity=0.312  Sum_probs=59.7

Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCC-CCCCEEEEECCCCH
Q ss_conf             65797178851232343201356511654077662046675889999874222100000000124-67733783045359
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISA-VSDNTFIVDARTDL  248 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~-~~~g~~~v~G~~~l  248 (320)
                      .++.+.+++++.++++.|++++.+..+|+|+ |.++|+||..|++..+.+.-...   . ..+.. ....-..++-..++
T Consensus         2 dvvtv~p~~tl~~a~~~m~~~~i~~lpVvd~-~~lvGiit~~Di~~~~~~~~~~~---~-~~v~~iM~~~~~~v~~~~~l   76 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAKF---S-LPVREVMGEPLPTVDPDAPI   76 (110)
T ss_pred             CEEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHHCCCCCC---C-CEEEEEEECCCEEECCCCCH
T ss_conf             8069999497999999999819988999989-99999999999999986387646---8-76984567594597898949


Q ss_pred             HHHHHHHC
Q ss_conf             99999828
Q gi|254780426|r  249 EELAKIIG  256 (320)
Q Consensus       249 ~~l~~~l~  256 (320)
                      +++.+.|.
T Consensus        77 ~~~~~~~~   84 (110)
T cd04609          77 EELSELLD   84 (110)
T ss_pred             HHHHHHHH
T ss_conf             99999887


No 155
>KOG2550 consensus
Probab=97.72  E-value=6.6e-05  Score=52.00  Aligned_cols=125  Identities=17%  Similarity=0.208  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCC--CCCCCCCEEHHHHHHHHHHC
Q ss_conf             8999999987304775764131200129998630103677897986598179984188--66422410299999876622
Q gi|254780426|r   72 ETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNS--LDNPRGMVHMRDVISYISHM  149 (320)
Q Consensus        72 ~~E~~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~--~d~iiGiv~~kDll~~~~~~  149 (320)
                      +.+..++.++-.|..--+.       +-+.+.++.++.++++....++|+-+||.++.  ..+.+|+|+.+|+-.. .  
T Consensus        98 e~QA~~v~~vK~~~~g~~~-------dp~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~--  167 (503)
T KOG2550          98 EDQADMVRRVKNYENGFIN-------NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-E--  167 (503)
T ss_pred             HHHHHHHHHHHHHHCCCCC-------CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHH-H--
T ss_conf             8877888888875225456-------86203775431055652065663354211577546515777742023455-3--


Q ss_pred             CCCCCCCCCCCCCCHHHHCCC-CEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             356432233345767885156-579717885123234320135651165407766204667588999
Q gi|254780426|r  150 YAKTNNINLNIQLSESNLIKN-ILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       150 ~~~~~~~~~~~~~~l~~~~r~-~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
                               .....+.++|.+ ++..|....+.++=+.+++.+..-.+|||+.|+++-+++..|+..
T Consensus       168 ---------~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k  225 (503)
T KOG2550         168 ---------DNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMK  225 (503)
T ss_pred             ---------CCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCEEEEEEHHHHHH
T ss_conf             ---------4551124330344301444466778899987631486523436776233433345665


No 156
>PRK05326 potassium/proton antiporter; Reviewed
Probab=97.71  E-value=0.00082  Score=44.84  Aligned_cols=100  Identities=22%  Similarity=0.311  Sum_probs=74.5

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf             76620466758899998742221000000001246773378304535999999828888877774674317999999842
Q gi|254780426|r  201 HGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDLEELAKIIGTDCNCLKGEQDVDSLGGLIFSVLD  280 (320)
Q Consensus       201 ~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~l~~l~~~l~~~l~~~~~~~~~~Ti~G~i~~~l~  280 (320)
                      -|...=+++.++-.+++-.-    +... +.... .+|.|.++|..++.|+...+|.       ++.-.|++.|+..+++
T Consensus       462 ~gD~l~v~~~~~~~~~l~~~----f~~~-~~~~~-~~g~f~~~~~~~~~~l~~~yg~-------~~~~~tl~~~~~~~~~  528 (563)
T PRK05326        462 AGDVLLVLGRERDLPALDRL----FSQA-PPVAL-DRGDFILEGEAKLADLALIYGL-------RDKQQTLAELVQQRLG  528 (563)
T ss_pred             CCCEEEEEECCCCHHHHHHH----HCCC-CCCCC-CCCCEEECCCCCHHHHHHHHCC-------CCCCCCHHHHHHHHHC
T ss_conf             89999999567625688887----0797-76766-6871677687658999987288-------8667869999999838


Q ss_pred             CCCCCCCEEEEECCEEEEEEEECCCEEEEEEEEE
Q ss_conf             3473798899758959999995188789999996
Q gi|254780426|r  281 RIPARGEVVLEIPGFEIVILDADVRCVRRVRIRR  314 (320)
Q Consensus       281 ~iP~~Ge~v~~~~g~~f~V~~~~~~rI~~v~v~~  314 (320)
                      +-|..||++ .++++.+.|.+++++||.++-++-
T Consensus       529 ~~~~~gd~~-~~~~~~l~v~~~~~~~i~~vgl~~  561 (563)
T PRK05326        529 GAPVVGDQV-ELGGIIWTVAELDDGRVTKIGLRL  561 (563)
T ss_pred             CCCCCCCEE-EECCEEEEEEECCCCEEEEEEEEC
T ss_conf             999988865-657759999962299898998646


No 157
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.68  E-value=3.5e-05  Score=53.79  Aligned_cols=55  Identities=16%  Similarity=0.285  Sum_probs=37.1

Q ss_pred             CCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHH
Q ss_conf             77576413120012999863010367789798659817998418866422410299999
Q gi|254780426|r   85 RKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVI  143 (320)
Q Consensus        85 ~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll  143 (320)
                      .+..+.++|++  ++.+++.++++.++.+.|.++++.|+||.+++  +++|+++..|+.
T Consensus        49 ~~~~v~~iMt~--~~itv~~~~~l~~a~~~M~~~~i~~lpVvd~g--~lvGiiT~~Div  103 (105)
T cd04599          49 PNRLVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLRER--KLVGIITKGTIA  103 (105)
T ss_pred             CCCCHHHHCCC--CCEEECCCCCHHHHHHHHHHCCCCEEEEEECC--EEEEEEECHHHC
T ss_conf             88796885027--98999794919999997798599799999899--999999945861


No 158
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.67  E-value=3.3e-05  Score=54.02  Aligned_cols=76  Identities=16%  Similarity=0.241  Sum_probs=60.1

Q ss_pred             HHHCCCCCHHHHHHHHHHHCC--------CCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf             997689898999999987304--------775764131200129998630103677897986598179984188664224
Q gi|254780426|r   64 ASLEGIFSETEKEIFNNILRF--------RKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRG  135 (320)
Q Consensus        64 ~~~~G~i~~~E~~ii~~vl~l--------~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiG  135 (320)
                      ..+.|.++++-+-+++ -|.+        -.-+|+|+|+  .+++++..++|+.++++.|.+++..++||.+++. .++|
T Consensus        28 ~~r~G~~n~et~~vL~-~f~~~~P~li~~v~~qV~DIm~--~~~vti~~~~sl~eA~~lM~e~~i~~LPVVD~~g-~l~G  103 (113)
T cd04597          28 AARLGEPNPQTRYVLE-YLGIEPPILLADVHPRVRDVIN--RKPVTARPNDPLREALNLMHEHNIRTLPVVDDDG-TPAG  103 (113)
T ss_pred             EECCCCCCHHHHHHHH-HCCCCCCEECCCCCCHHHHHCC--CCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCC-EEEE
T ss_conf             7306899989999999-8499998002156505666313--7883419998299999999984998786988999-3999


Q ss_pred             CEEHHHHH
Q ss_conf             10299999
Q gi|254780426|r  136 MVHMRDVI  143 (320)
Q Consensus       136 iv~~kDll  143 (320)
                      +++.+||-
T Consensus       104 iIT~~DIA  111 (113)
T cd04597         104 IITLLDLA  111 (113)
T ss_pred             EEEHHHHH
T ss_conf             98778743


No 159
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.66  E-value=6.2e-05  Score=52.20  Aligned_cols=55  Identities=20%  Similarity=0.337  Sum_probs=48.8

Q ss_pred             HHHHCC---CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHH
Q ss_conf             788515---6579717885123234320135651165407766204667588999987
Q gi|254780426|r  164 ESNLIK---NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLM  218 (320)
Q Consensus       164 l~~~~r---~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~iv  218 (320)
                      ++++|+   +.++|++++++.+++..|-+.+..+++|+|+.|.+.||+|=-|+=..+-
T Consensus       204 V~dlM~~~~~lP~v~~~~~l~dai~~mt~k~lG~v~Vvd~~gkL~GIiTDGDLRR~l~  261 (326)
T PRK10892        204 VSDIMHTGDEIPHVKKTASLRDALLEITRKNLGMTVICDDNMMIEGIFTDGDLRRVFD  261 (326)
T ss_pred             HHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECHHHHHHHH
T ss_conf             9998513765885377602999999874589349999858996899986268999987


No 160
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE.  MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.66  E-value=5.7e-05  Score=52.45  Aligned_cols=58  Identities=26%  Similarity=0.336  Sum_probs=47.8

Q ss_pred             CCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHH
Q ss_conf             4775764131200129998630103677897986598179984188664224102999998
Q gi|254780426|r   84 FRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVIS  144 (320)
Q Consensus        84 l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~  144 (320)
                      -.+.+++++|++  +..+++.++++.++.+.+.+++++++||.+++. +++|+++..|++.
T Consensus        50 ~~~~~v~~iM~~--~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~~-~lvGiIt~~Di~~  107 (109)
T cd04606          50 DPDTPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEEG-RLVGIITVDDVID  107 (109)
T ss_pred             CCCCCHHHHHCC--CEEECCCCCCHHHHHHHHHHHCCCEEEEECCCC-EEEEEEEHHHHHH
T ss_conf             888716663002--136337999899999999985276046898899-7999999689684


No 161
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.59  E-value=3.9e-05  Score=53.52  Aligned_cols=47  Identities=21%  Similarity=0.319  Sum_probs=41.6

Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             65797178851232343201356511654077662046675889999
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      .|+++...+++.+++..|.+.+..-++||||.+..+|++|..|+++.
T Consensus         2 ~pvtv~~~~~L~~a~~~~~e~~~~~i~VVD~~~k~vG~it~~Dll~~   48 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEI   48 (111)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHH
T ss_conf             44686599959999999987699768998899968899889998643


No 162
>pfam00571 CBS CBS domain. CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP.
Probab=97.57  E-value=0.0001  Score=50.73  Aligned_cols=55  Identities=25%  Similarity=0.476  Sum_probs=49.8

Q ss_pred             EHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHH
Q ss_conf             6413120012999863010367789798659817998418866422410299999876
Q gi|254780426|r   89 IDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYI  146 (320)
Q Consensus        89 v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~  146 (320)
                      +.++|++  +..+++.++++.++++.+.+++++++||++++ +.++|+++.+|++.++
T Consensus         1 v~~im~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~-~~~~Gvit~~dl~~~~   55 (57)
T pfam00571         1 VKDIMTP--DVVTVPPDTSLEEALELMRENGISRLPVVDED-GKLVGIVTLRDLLRAL   55 (57)
T ss_pred             CCCCCCC--CCEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CEEEEEEEHHHHHHHH
T ss_conf             9422779--99899790909999999985399579999279-9499999789999986


No 163
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown.  In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.55  E-value=0.00013  Score=50.00  Aligned_cols=48  Identities=23%  Similarity=0.293  Sum_probs=42.2

Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHH
Q ss_conf             657971788512323432013565116540776620466758899998
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVL  217 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~i  217 (320)
                      +|+.+.+++++.++++.|++++.+-++|||+.|...|+||..|+....
T Consensus         2 ~pvtv~pd~~l~eA~~lm~~~~~~~l~VVd~~g~l~Givt~~Dl~~~~   49 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS   49 (106)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHC
T ss_conf             983899989399999999973998799997999789998999987630


No 164
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.54  E-value=0.00012  Score=50.24  Aligned_cols=48  Identities=25%  Similarity=0.406  Sum_probs=43.6

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHH
Q ss_conf             2999863010367789798659817998418866422410299999876
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYI  146 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~  146 (320)
                      +++++..++++.++.+.+.+++++++||.+++ ++++|+++.+|++.++
T Consensus         1 ~~itv~~~~~v~~a~~~m~~~~i~~lPVVd~~-~~lvGiit~~Dil~~l   48 (49)
T smart00116        1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKAL   48 (49)
T ss_pred             CCEEECCCCCHHHHHHHHHHHCCCEEEEECCC-CCEEEEEEHHHHHHHH
T ss_conf             98699987929999999998099857699899-9199998879999864


No 165
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.52  E-value=0.00052  Score=46.15  Aligned_cols=49  Identities=24%  Similarity=0.331  Sum_probs=43.1

Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHH
Q ss_conf             6579717885123234320135651165407766204667588999987
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLM  218 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~iv  218 (320)
                      +++.+.+++++.++++.|++++.+-.+|+|+.|.++|++|..|+.....
T Consensus         2 ~Vitv~~~~~l~eA~~lm~~~~i~~lPVvd~~g~lvGiis~~Dl~~~~~   50 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLL   50 (126)
T ss_pred             CEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHHHC
T ss_conf             5799999599999999999809878999928990999999899765551


No 166
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=97.49  E-value=0.00062  Score=45.65  Aligned_cols=93  Identities=18%  Similarity=0.211  Sum_probs=63.2

Q ss_pred             CCCHHHHCC-CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCE
Q ss_conf             576788515-6579717885123234320135651165407766204667588999987422210000000012467733
Q gi|254780426|r  161 QLSESNLIK-NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNT  239 (320)
Q Consensus       161 ~~~l~~~~r-~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~  239 (320)
                      ...+.++|+ ....+++++++.++.+.|.+.+.+-..|+|+.|...|+|+++|+...+..+-.. ....-.++...  .-
T Consensus       455 ~~~v~dvm~~~~~~v~~~~~l~e~~~~~~~~~~~~~~Vvd~~g~l~Giv~l~dl~~~~~~~~~~-~~~~~~~~~~~--~~  531 (583)
T PRK01862        455 TTQMRELIQPAQTVVPLTASVADMTRVFLEYPVKYLYVTDDDGRFRGAVALKDITSDLLDKRDT-TDKTAADYAHT--PF  531 (583)
T ss_pred             HCCHHHHCCCCCCEECCCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHHHHHHCCCCC-CCCCHHHHHCC--CC
T ss_conf             0809996387882349999899999999847970799988999799997899988775163555-64609998179--99


Q ss_pred             EEEECCCCHHHHHHHHC
Q ss_conf             78304535999999828
Q gi|254780426|r  240 FIVDARTDLEELAKIIG  256 (320)
Q Consensus       240 ~~v~G~~~l~~l~~~l~  256 (320)
                      -.+.-..++.+.-+.|.
T Consensus       532 ~~l~~~~sL~~al~~f~  548 (583)
T PRK01862        532 PLLTPDMPLRDALEHFM  548 (583)
T ss_pred             CEECCCCCHHHHHHHHH
T ss_conf             57889998999999999


No 167
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.41  E-value=0.00075  Score=45.09  Aligned_cols=83  Identities=22%  Similarity=0.294  Sum_probs=58.9

Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCCHH
Q ss_conf             65797178851232343201356511654077662046675889999874222100000000124677337830453599
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDLE  249 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~l~  249 (320)
                      ++.++++++++.+++..|++++.+.++|+|+.|.+.|++|..|++..+.....+....   .-.-.....+.+....++.
T Consensus         2 ~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~   78 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVT---VGDVMTRDVVTVSPDTSLE   78 (113)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHHHHHCCCCCCCC---EEEEEECCCEEEEECCHHH
T ss_conf             9779689298999999999839809999939995999998899898876315741033---0456750546897321177


Q ss_pred             HHHHHH
Q ss_conf             999982
Q gi|254780426|r  250 ELAKII  255 (320)
Q Consensus       250 ~l~~~l  255 (320)
                      +....+
T Consensus        79 ~~~~~~   84 (113)
T cd02205          79 EAAELM   84 (113)
T ss_pred             HHHHHH
T ss_conf             999999


No 168
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.39  E-value=0.00017  Score=49.26  Aligned_cols=56  Identities=18%  Similarity=0.262  Sum_probs=49.4

Q ss_pred             HHHHCCC---CEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHH
Q ss_conf             7885156---5797178851232343201356511654077662046675889999874
Q gi|254780426|r  164 ESNLIKN---ILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMR  219 (320)
Q Consensus       164 l~~~~r~---~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivG  219 (320)
                      +.++|++   .++|++++++.+++..|-+.+..+++|+|+.|.+.|++|--||=..+..
T Consensus       199 V~dlM~~~~~lP~v~~~~~l~dai~~ms~k~lG~v~Vvd~~~kL~GIITDGDLRR~l~k  257 (321)
T PRK11543        199 VHHLMRRGDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVKGVFTDGDLRRWLVG  257 (321)
T ss_pred             HHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCEEEEEECHHHHHHHHC
T ss_conf             99997335578989999879999999664886179983377506888744389999863


No 169
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.30  E-value=0.0005  Score=46.23  Aligned_cols=71  Identities=21%  Similarity=0.479  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHC---CCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHH
Q ss_conf             99999998730---4775764131200129998630103677897986598179984188664224102999998766
Q gi|254780426|r   73 TEKEIFNNILR---FRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYIS  147 (320)
Q Consensus        73 ~E~~ii~~vl~---l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~  147 (320)
                      ++++|..+++.   =...+|.++||  ..+.+++..+-+-|++-.|.+.+..|+||++++  +++|+++..|++....
T Consensus       197 T~~dl~~~v~~~g~~~~~~V~evmT--~p~~svd~~~~~feAml~m~r~~I~hl~V~e~g--q~~Gilt~~dIl~l~s  270 (610)
T COG2905         197 TRKDLRSRVIADGRSKTQKVSEVMT--SPVISVDRGDFLFEAMLMMLRNRIKHLPVTEDG--QPLGILTLTDILRLFS  270 (610)
T ss_pred             EHHHHHHHHHHCCCCCCCCHHHHHC--CCCEEECCCCHHHHHHHHHHHHCCCEEEEECCC--EEEEEEEHHHHHHHHC
T ss_conf             2277789998658974233545414--684454476569999999998077442361189--0467766999997617


No 170
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.26  E-value=0.00024  Score=48.34  Aligned_cols=46  Identities=15%  Similarity=0.315  Sum_probs=31.7

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHH
Q ss_conf             5657971788512323432013565116540776620466758899
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIV  214 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIl  214 (320)
                      |.++.|.+.+++.++++.|.+++....+|+|+.|.++||+|-.|++
T Consensus         1 rdv~tv~~~~~v~~a~~~m~~~~i~~lpVvd~~g~lvGIiT~rDli   46 (96)
T cd04614           1 RNVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLI   46 (96)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEECHHHC
T ss_conf             9963908969899999999972998799998999499999888882


No 171
>TIGR00400 mgtE magnesium transporter; InterPro: IPR006669    This is the MgtE family of magnesium transporters. All the archaebacterial and eukaryotic examples have two copies of the integral membrane region. This suggests that the eubacterial examples may act as dimers. Members of this family probably transport Mg^2+ or other divalent cations into the cell. The alignment contains two highly conserved aspartates that may be involved in cation binding.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport.
Probab=97.10  E-value=0.0043  Score=40.09  Aligned_cols=142  Identities=20%  Similarity=0.247  Sum_probs=109.3

Q ss_pred             CCCCHHHHHHHHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCC---CCEEEEE-CCCCCCCCCCEEHHHHH
Q ss_conf             8989899999998730477576413120012999863010367789798659---8179984-18866422410299999
Q gi|254780426|r   68 GIFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYG---RSWMPVY-KNSLDNPRGMVHMRDVI  143 (320)
Q Consensus        68 G~i~~~E~~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~---~sR~PV~-~~~~d~iiGiv~~kDll  143 (320)
                      .....+++..++..+.+..-++..+|+  .+.+++..+-+..+++..++...   -+-+..| .++..++.|++..+|++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  193 (460)
T TIGR00400       116 ASLSEEERKAVNLLLGYPPDSAGRILT--TEYVWLKEDYTVGDALDYLRRVAETAEDIYTLYVTNESKRLTGVLSLRDLI  193 (460)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCEEE--EEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHH
T ss_conf             642123567888873478532342000--000111210015788998888765542102457633410220001123333


Q ss_pred             HHHHHCCCCCCCCCCCCCCCHHHHCCC-CEEECCCCCHHH-HHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHH
Q ss_conf             876622356432233345767885156-579717885123-234320135651165407766204667588999987422
Q gi|254780426|r  144 SYISHMYAKTNNINLNIQLSESNLIKN-ILFVPSSMLVSD-LLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDI  221 (320)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~l~~~~r~-~~~Vpe~~~l~~-lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei  221 (320)
                      ..             .++..+.+++++ ..++.....-.+ +...+++...-...|+|+.|...|++|.+|+++.+..+-
T Consensus       194 ~~-------------~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~p~~~~~~~~~g~~~~dd~~~~~~~~~  260 (460)
T TIGR00400       194 LA-------------KPEEYLGDLLFPDGVSVDGLNDEEEDVARLIEKYDFLAVPVVDNEGRLVGIVTVDDILDVLEEEA  260 (460)
T ss_pred             HC-------------CCHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHHHHHHH
T ss_conf             03-------------50567766542100135204540467898876402102001316771687542346889887520


Q ss_pred             HHH
Q ss_conf             210
Q gi|254780426|r  222 TSE  224 (320)
Q Consensus       222 ~de  224 (320)
                      .++
T Consensus       261 ~~d  263 (460)
T TIGR00400       261 TED  263 (460)
T ss_pred             HHH
T ss_conf             023


No 172
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=97.07  E-value=0.00037  Score=47.13  Aligned_cols=61  Identities=13%  Similarity=0.206  Sum_probs=54.2

Q ss_pred             CCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHH
Q ss_conf             775764131200129998630103677897986598179984188664224102999998766
Q gi|254780426|r   85 RKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYIS  147 (320)
Q Consensus        85 ~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~  147 (320)
                      .+.+++++||| .++++...+.+++++.+++.+++..++||.+++. +++|+++.||+.+.-.
T Consensus       145 ~~~~V~~vMT~-~~lvt~~~~is~~eA~~~l~~~kieklPvVd~~g-~L~Glit~kDi~k~~~  205 (486)
T PRK05567        145 LSQPVSEVMTK-ERLVTVPEGTTLEEALELLHEHRIEKLLVVDDNG-RLKGLITVKDIEKAEE  205 (486)
T ss_pred             CCCCHHHHHCC-CCEEEECCCCCHHHHHHHHHHHHHCCCCEECCCC-CEEEEEEHHHHHHHHH
T ss_conf             77654675345-7328925889999999999973130342774689-6888877667776520


No 173
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=97.01  E-value=0.0011  Score=43.97  Aligned_cols=58  Identities=16%  Similarity=0.182  Sum_probs=52.3

Q ss_pred             CCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHH
Q ss_conf             7757641312001299986301036778979865981799841886642241029999987
Q gi|254780426|r   85 RKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISY  145 (320)
Q Consensus        85 ~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~  145 (320)
                      ...+++++|||  ++++.+...+++++.+++.+++...+||.+++. ++.|+++.||+.+.
T Consensus       146 ~~~~v~~vMT~--~lvt~~~g~sl~eA~~lL~~~kiekLpvVd~~~-~L~gLiT~kDi~k~  203 (479)
T PRK07807        146 RFTRVGDVMST--DLVTLPAGTDPRKAFDLLEAAPVKVAPVVDADG-RLAGVLTRTGALRA  203 (479)
T ss_pred             CCCCHHHHHCC--CCEEECCCCCHHHHHHHHHHCCCCCCEEECCCC-EEEEEEEEEHHHHC
T ss_conf             77758886257--736613667879999999753523113775699-29999996116454


No 174
>pfam01595 DUF21 Domain of unknown function DUF21. This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to hemolysin C from Brachyspira hyodysenteriae, which does not contain this domain. This domain is found in the N-terminus of the proteins adjacent to two intracellular CBS domains pfam00571.
Probab=96.90  E-value=0.0018  Score=42.53  Aligned_cols=71  Identities=14%  Similarity=0.230  Sum_probs=48.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHHHHH--HHHHHHHHCCCCC---CCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             679988765555554443203---5687530268998--9999876337888---889999999999799768989899
Q gi|254780426|r    4 DFKINSSEHPKEKNEGIDLSP---SISKTSVPAFWTR--TIRALCKTWKLMK---LSHHKGIRLPRIDASLEGIFSETE   74 (320)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~p---~l~~i~~P~vw~~--~~~~~~~~~~~~~---~~~~eel~~l~~~~~~~G~i~~~E   74 (320)
                      |..|++.+......-+....|   .+.++++|++|..  ..+.+.+.+|..+   ..++||++.++++|+++|.++++|
T Consensus       104 Ei~PK~ia~~~~~~~a~~~a~~~~~~~~l~~Pl~~~~~~i~~~i~~~~g~~~~~~~~s~eEl~~lv~~~~~~G~i~~~E  182 (182)
T pfam01595       104 EILPKTLARRNPERIALRVAPPLRVLMKLLYPLVWLLSKLSNLLLRLFGVKPEEPAVTEEELRALVDEGEEEGVIEEEE  182 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf             5879999998899999999999999999999999999999999998629998889999999999999999879989899


No 175
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=96.87  E-value=0.001  Score=44.19  Aligned_cols=82  Identities=18%  Similarity=0.308  Sum_probs=61.5

Q ss_pred             ECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf             4188664224102999998766223564322333457678851-565797178851232343201356511654077662
Q gi|254780426|r  126 YKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGT  204 (320)
Q Consensus       126 ~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~  204 (320)
                      .+=++|++--+++--.+-.+....          .+..-.++| |++..|++.+++.++..+|++++..-..|+||.-.+
T Consensus       219 lDIdrddLe~llr~~elqa~~R~~----------~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl  288 (382)
T COG3448         219 LDIDRDDLERLLRETELQALRRRM----------GELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRL  288 (382)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHHHH----------CCCCHHHHCCCCCEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCE
T ss_conf             157889999999999999999985----------6430888637453501776775799999997686504532666610


Q ss_pred             EEEEEHHHHHHHH
Q ss_conf             0466758899998
Q gi|254780426|r  205 DGLVSYEDIVSVL  217 (320)
Q Consensus       205 ~GiVTleDIle~i  217 (320)
                      +|+||+.|+++..
T Consensus       289 ~GiVt~~dl~~~a  301 (382)
T COG3448         289 VGIVTQRDLLKHA  301 (382)
T ss_pred             EEEEEHHHHHHCC
T ss_conf             0324488776016


No 176
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.87  E-value=0.00077  Score=45.02  Aligned_cols=60  Identities=12%  Similarity=0.163  Sum_probs=53.1

Q ss_pred             CCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHH
Q ss_conf             477576413120012999863010367789798659817998418866422410299999876
Q gi|254780426|r   84 FRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYI  146 (320)
Q Consensus        84 l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~  146 (320)
                      -.+.+|+++|||  ++++.+.+.+++++.+++.+++..++||.+++. +++|+++.||+.+.-
T Consensus       155 d~~~~v~~vMt~--~lvt~~~~isl~eA~~ll~~~kieklpvVd~~g-~L~glit~kDi~k~~  214 (499)
T PTZ00314        155 DKSTPVSEIMTT--DLVVGRYPITLEDANDVLNRSRKGVLPIVNDNG-ELVALVSRSDAVKNR  214 (499)
T ss_pred             CCCCCHHHHHCC--CCEEECCCCCHHHHHHHHHHHHHCCCEEECCCC-CEEEEEECCHHHHHH
T ss_conf             677588886156--726725999999999999860331230665789-589986303487753


No 177
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.85  E-value=0.0015  Score=43.18  Aligned_cols=52  Identities=17%  Similarity=0.290  Sum_probs=43.2

Q ss_pred             HHCCCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHH
Q ss_conf             851565797178851232343201356511654077662046675889999874
Q gi|254780426|r  166 NLIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMR  219 (320)
Q Consensus       166 ~~~r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivG  219 (320)
                      .+...+..+++.+++.+++..+.+....  +|||+.|.+.|+||..++++++.|
T Consensus       330 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~v~~~g~l~G~i~~~~~l~~l~g  381 (382)
T TIGR03415       330 SLEAAPTVINPDTLMRDVLAARHRTGGA--ILLVENGRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             HHCCCCCEECCCCCHHHHHHHHHHCCCC--EEEECCCEEEEEEEHHHHHHHHHC
T ss_conf             3125773338989399999999858998--099059959999868999998627


No 178
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function.  The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.73  E-value=0.0043  Score=40.14  Aligned_cols=81  Identities=19%  Similarity=0.238  Sum_probs=60.8

Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECC-CCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCCH
Q ss_conf             65797178851232343201356511654077-66204667588999987422210000000012467733783045359
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEH-GGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDL  248 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~-G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~l  248 (320)
                      .+.+++.++++.++++.|++.+....+|+|+. +.++|+|+..|++.....+      .....+.......+.++..+++
T Consensus         2 ~v~~i~~~~s~~e~~~~~~~~~~sr~PV~~~~~~~ivGil~~kDll~~~~~~------~~~~~~~~~~~~~~~v~~~~~l   75 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEG------EEDLDLRDLLRPPLFVPESTPL   75 (111)
T ss_pred             CEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEHHHHHHHHCC------CCCCCHHHHCCCCEECCHHHHH
T ss_conf             6899969999999999999779977999954788778999911445666527------8764077640442222556658


Q ss_pred             HHHHHHHC
Q ss_conf             99999828
Q gi|254780426|r  249 EELAKIIG  256 (320)
Q Consensus       249 ~~l~~~l~  256 (320)
                      .++-+.|.
T Consensus        76 ~~~l~~~~   83 (111)
T cd04590          76 DDLLEEMR   83 (111)
T ss_pred             HHHHHHHH
T ss_conf             89998435


No 179
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.70  E-value=0.0015  Score=43.12  Aligned_cols=124  Identities=22%  Similarity=0.321  Sum_probs=85.4

Q ss_pred             HHHHHHHHHCCCCEEEHHEEECCCEEEEEEE-CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCC
Q ss_conf             9999998730477576413120012999863-010367789798659817998418866422410299999876622356
Q gi|254780426|r   74 EKEIFNNILRFRKIRIDDIMISRVSINAVED-KATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAK  152 (320)
Q Consensus        74 E~~ii~~vl~l~~~~v~diMtPr~~i~~i~~-~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~  152 (320)
                      -++.++++=...=.++++||.+ .+...... ......+++.+...+-+-+-++. ...+.+|++..-++...       
T Consensus       261 V~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~-~~~~~~g~v~~~~~~~~-------  331 (386)
T COG4175         261 VRDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVD-RGNKFVGVVSIDSLVKA-------  331 (386)
T ss_pred             HHHHHHCCCHHHEEEHHHHHCC-CCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH-CCCCEEEEEECCCHHCC-------
T ss_conf             9999843775332238776314-54344455555631121233322411367774-25752558964620101-------


Q ss_pred             CCCCCCCCCCCHHHHCCCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHH
Q ss_conf             43223334576788515657971788512323432013565116540776620466758899998742
Q gi|254780426|r  153 TNNINLNIQLSESNLIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRD  220 (320)
Q Consensus       153 ~~~~~~~~~~~l~~~~r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGe  220 (320)
                                   ....++..++.++++.+.+...++...++| |+||.|..+|+++...++++|.+.
T Consensus       332 -------------~~~~~~~~v~~d~~~~~~~~~~~~~~~p~a-Vvde~~r~vG~i~~~~vl~aL~~~  385 (386)
T COG4175         332 -------------ALIDDVLTVDADTPLSEILARIRQAPCPVA-VVDEDGRYVGIISRGELLEALARI  385 (386)
T ss_pred             -------------CCCCCCCCCCCCCHHHHHHHHHHCCCCCEE-EECCCCCEEEEECHHHHHHHHHCC
T ss_conf             -------------014653356764248899998752898546-885788577786388999997458


No 180
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.63  E-value=0.0021  Score=42.10  Aligned_cols=50  Identities=16%  Similarity=0.286  Sum_probs=43.9

Q ss_pred             HEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHH
Q ss_conf             131200129998630103677897986598179984188664224102999998
Q gi|254780426|r   91 DIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVIS  144 (320)
Q Consensus        91 diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~  144 (320)
                      .+|.+  ...+++.++++.++.+.+.+.|..++||.+++  .++|+|+.||+++
T Consensus        55 ~~m~~--~p~tv~~~~~l~~~~~lf~~~g~r~l~Vv~~g--~lvGiITr~Dl~~  104 (105)
T cd04591          55 NYIDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVDEG--RLVGIITRKDLLK  104 (105)
T ss_pred             HHCCC--CCEEECCCCCHHHHHHHHHHHCCCEEEEEECC--EEEEEEEHHHHHC
T ss_conf             75879--98398999959999999999499588995799--9999999899534


No 181
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=96.53  E-value=0.0098  Score=37.78  Aligned_cols=74  Identities=20%  Similarity=0.341  Sum_probs=63.7

Q ss_pred             CCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCEEEEEEEECCCEEEEEEEEE
Q ss_conf             733783045359999998288888777746743179999998423473798899758959999995188789999996
Q gi|254780426|r  237 DNTFIVDARTDLEELAKIIGTDCNCLKGEQDVDSLGGLIFSVLDRIPARGEVVLEIPGFEIVILDADVRCVRRVRIRR  314 (320)
Q Consensus       237 ~g~~~v~G~~~l~~l~~~l~~~l~~~~~~~~~~Ti~G~i~~~l~~iP~~Ge~v~~~~g~~f~V~~~~~~rI~~v~v~~  314 (320)
                      -|.++++...+..++.-..+.+.-   +.+...|+++++..++|..|..||.+ +|+|+...|.+.+.+||.++-++-
T Consensus       494 fg~f~~e~~~~~~~~~~~yg~~~~---~~d~~~~~~~~i~~~lg~~~v~~Drv-~~~~l~~~v~~~~d~~it~ig~~~  567 (574)
T COG3263         494 FGDFILEPSAKAADVALAYGLGDG---YADKAQTLGELVTQLLGGAPVLGDRV-EFGGLIWTVAEKEDNRVTKIGVRV  567 (574)
T ss_pred             HCCHHCCCCHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHCCCCEEEEEE-EECCEEEEEEECCCCEEEEEEEEC
T ss_conf             121320722346679998579987---03665357788999837873220157-875679998532247344223422


No 182
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=96.30  E-value=0.0036  Score=40.62  Aligned_cols=118  Identities=18%  Similarity=0.305  Sum_probs=85.5

Q ss_pred             CCHHHHCCC---CEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCC-CCC
Q ss_conf             767885156---5797178851232343201356511654077662046675889999874222100000000124-677
Q gi|254780426|r  162 LSESNLIKN---ILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISA-VSD  237 (320)
Q Consensus       162 ~~l~~~~r~---~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~-~~~  237 (320)
                      ..+.++++|   ..|..++.++.+.++.-.+.+.....|+|++-.++|+||+.|++..-      ...    .+.+ ...
T Consensus       188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~------~~t----~ieKVMtk  257 (432)
T COG4109         188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKK------PST----TIEKVMTK  257 (432)
T ss_pred             EEHHHHCCCCCCCEECCCCCCHHHHHHHHHHCCCCCCCEECCCCEEEEEEEEHHHHCCC------CCC----CHHHHHCC
T ss_conf             55877446443432324645099999999971987341331442699999834644479------986----17777426


Q ss_pred             CEEEEECCCCHHHHHHHHCCCC-CCCCCCCCCCCHHHHH--------HHHHCCCCCCCCEE
Q ss_conf             3378304535999999828888-8777746743179999--------99842347379889
Q gi|254780426|r  238 NTFIVDARTDLEELAKIIGTDC-NCLKGEQDVDSLGGLI--------FSVLDRIPARGEVV  289 (320)
Q Consensus       238 g~~~v~G~~~l~~l~~~l~~~l-~~~~~~~~~~Ti~G~i--------~~~l~~iP~~Ge~v  289 (320)
                      +-+.+.+.+++-.+...+.|+- +-.|--.+-.|+.|.+        |...++-|++|+++
T Consensus       258 np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~qpqvget~  318 (432)
T COG4109         258 NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQPQVGETI  318 (432)
T ss_pred             CCEEECCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCH
T ss_conf             9755425226889988887645526568837861898988999999998751288655447


No 183
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=96.20  E-value=0.0068  Score=38.82  Aligned_cols=92  Identities=18%  Similarity=0.270  Sum_probs=69.8

Q ss_pred             CCCCHHHHC-CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCC
Q ss_conf             457678851-5657971788512323432013565116540776620466758899998742221000000001246773
Q gi|254780426|r  160 IQLSESNLI-KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDN  238 (320)
Q Consensus       160 ~~~~l~~~~-r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g  238 (320)
                      +..++..+| ++++.+-.++++.++-..|-+++.+-|.|+|.. .++|++|+.||..++.--  +. +..-..+-+  .+
T Consensus       170 Pk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~g--~~-~~kV~~~M~--k~  243 (294)
T COG2524         170 PKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIANG--NL-DAKVSDYMR--KN  243 (294)
T ss_pred             CCCHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCCCCEECCC-CEEEEEEHHHHHHHHHCC--CC-CCCHHHHHC--CC
T ss_conf             7302666266784676688639999999997286678510289-458999889999999768--96-543888750--57


Q ss_pred             EEEEECCCCHHHHHHHHCC
Q ss_conf             3783045359999998288
Q gi|254780426|r  239 TFIVDARTDLEELAKIIGT  257 (320)
Q Consensus       239 ~~~v~G~~~l~~l~~~l~~  257 (320)
                      .+.+++...|.|.-+.+..
T Consensus       244 vitI~eDe~i~dAir~M~~  262 (294)
T COG2524         244 VITINEDEDIYDAIRLMNK  262 (294)
T ss_pred             CCEECCCHHHHHHHHHHHH
T ss_conf             7047573049999999876


No 184
>COG0517 FOG: CBS domain [General function prediction only]
Probab=96.13  E-value=0.0097  Score=37.82  Aligned_cols=52  Identities=25%  Similarity=0.375  Sum_probs=39.6

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHH
Q ss_conf             56579717885123234320135651165407766204667588999987422
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDI  221 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei  221 (320)
                      +.+.++.+..++.+++..|.+++...+.|++. +...|++|..|++..+....
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~   58 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGG   58 (117)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCEEEEEEEC-CEEEEEEEHHHHHHHHHCCC
T ss_conf             68808989981999999998749338997439-99999999899987664166


No 185
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=96.07  E-value=0.008  Score=38.37  Aligned_cols=61  Identities=11%  Similarity=0.148  Sum_probs=53.7

Q ss_pred             CEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHH
Q ss_conf             75764131200129998630103677897986598179984188664224102999998766
Q gi|254780426|r   86 KIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYIS  147 (320)
Q Consensus        86 ~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~  147 (320)
                      ..++...|+|+.++++...+.+.+++.+++.+++...+||.+++. +++|+++.||+...-.
T Consensus       140 ~~~~~~~~~~~~~lvt~~~~~~~~ea~~~l~~~kieklpvvd~~g-~L~glit~kDi~k~~~  200 (467)
T pfam00478       140 LSKVSVVMTMTEDLVTAPEGITLEEANEILHEHKIEKLPIVDDDG-ELVGLITRKDIEKARD  200 (467)
T ss_pred             CCCCCEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHCCEECCCC-CEEEEEEHHHHHHHHC
T ss_conf             543201101355427724889989999999975564154446788-3788887434677420


No 186
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=95.74  E-value=0.057  Score=32.79  Aligned_cols=125  Identities=16%  Similarity=0.230  Sum_probs=71.0

Q ss_pred             EEEEECCCCCCCCCCEEHHHHHHHHHHCCCC--CCCCCCCCCCCHHHHCCC-CEEECC---CCCHHHHHHHHHCCCCCCE
Q ss_conf             7998418866422410299999876622356--432233345767885156-579717---8851232343201356511
Q gi|254780426|r  122 WMPVYKNSLDNPRGMVHMRDVISYISHMYAK--TNNINLNIQLSESNLIKN-ILFVPS---SMLVSDLLTNIQESRIRMA  195 (320)
Q Consensus       122 R~PV~~~~~d~iiGiv~~kDll~~~~~~~~~--~~~~~~~~~~~l~~~~r~-~~~Vpe---~~~l~~lL~~m~~~~~~~a  195 (320)
                      |+-|.++.  .|+-+=+..+++....+.+-.  ....+...-....++|++ +..+..   ......+++.|+.++...+
T Consensus       234 RIaVM~~G--~Ivq~GtpeeI~~~Pa~~yV~~F~~~v~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~al~~m~~~~~~~~  311 (400)
T PRK10070        234 RIAIMQNG--EVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYG  311 (400)
T ss_pred             EEEEEECC--EEEEECCHHHHHHCCCCHHHHHHHCCCCHHHCEEHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCEE
T ss_conf             99999898--8999728899986799868998755477877023989624687521314888699999999985598679


Q ss_pred             EEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCCHHHHHHHHC
Q ss_conf             6540776620466758899998742221000000001246773378304535999999828
Q gi|254780426|r  196 LVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDLEELAKIIG  256 (320)
Q Consensus       196 iVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~l~~l~~~l~  256 (320)
                      +|+|+.+.+.|+||.+++....-..     ..-.. +  ..+....++..+++.++-..+.
T Consensus       312 ~vvd~~~~~~G~v~~~~~~~~~~~~-----~~~~~-~--~~~~~~~v~~~~~l~~~~~~~~  364 (400)
T PRK10070        312 YVIERGNKFVGAVSIDSLKAALTQQ-----QGLDA-A--LIDAPLAVDAQTPLSELLSHVG  364 (400)
T ss_pred             EEECCCCEEEEEEEHHHHHHHHHCC-----CCHHH-H--HHCCCCCCCCCCCHHHHHHHHH
T ss_conf             9986998088998899999776337-----76366-7--5058842399998999999997


No 187
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein; InterPro: IPR005991    This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria..
Probab=95.58  E-value=0.022  Score=35.50  Aligned_cols=108  Identities=15%  Similarity=0.242  Sum_probs=89.3

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf             129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP  175 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp  175 (320)
                      ..-+.+.++.++.+++.++.+.-|.---|.+++. +.+|+|.-+|+...-             .-..+.+++ +..+.+|
T Consensus        96 dtP~~~~P~~~v~~a~~l~~krah~~~~v~~~~~-~P~G~v~~~~~~G~d-------------~ft~~~~~~~~~~~~~~  161 (476)
T TIGR01303        96 DTPITLAPHDTVADALALIHKRAHGAAVVVEEDG-KPVGVVTDKDLEGVD-------------RFTQVEEVMSTDLVTLP  161 (476)
T ss_pred             CCCEEECCCHHHHHHHHHHHHHCCCEEEEEECCC-CEEEEEECCCCCCHH-------------HHHHHHHHHHHHHEEEC
T ss_conf             3741654623389999987531143178981698-126788515310004-------------56788877754320203


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHH
Q ss_conf             7885123234320135651165407766204667588999987
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLM  218 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~iv  218 (320)
                      +...-.+++..+.+....+|.++|..|.+.|++|..--+.+-+
T Consensus       162 ~~~~P~~~f~~l~~~~~~~a~~~~~dG~l~G~l~r~Ga~ra~~  204 (476)
T TIGR01303       162 ADLEPREAFDLLEEASRKLAPVVDADGSLAGILTRTGALRATL  204 (476)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEC
T ss_conf             6788889999987410120111105772555441143000000


No 188
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=94.16  E-value=0.058  Score=32.74  Aligned_cols=46  Identities=30%  Similarity=0.515  Sum_probs=29.4

Q ss_pred             CCCEEECCCCCHHHHHHHHHC-----CCCCCEEEEECCCCCEEEEEHHHHH
Q ss_conf             565797178851232343201-----3565116540776620466758899
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQE-----SRIRMALVIDEHGGTDGLVSYEDIV  214 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~-----~~~~~aiVvDE~G~~~GiVTleDIl  214 (320)
                      .+-+.++++.++.+++..+|+     +..+...|+|+.+...|+|++.+++
T Consensus       140 ~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll  190 (451)
T COG2239         140 TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL  190 (451)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEHHHHH
T ss_conf             025872067589999999997236756623799987766467775699986


No 189
>PRK11573 hypothetical protein; Provisional
Probab=94.16  E-value=0.23  Score=28.81  Aligned_cols=124  Identities=7%  Similarity=0.098  Sum_probs=74.2

Q ss_pred             CCCCHHHHCCC---CEEECCCCCHHHHHHHHHCCCCCCEEEEECC-CCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCC
Q ss_conf             45767885156---5797178851232343201356511654077-6620466758899998742221000000001246
Q gi|254780426|r  160 IQLSESNLIKN---ILFVPSSMLVSDLLTNIQESRIRMALVIDEH-GGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAV  235 (320)
Q Consensus       160 ~~~~l~~~~r~---~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~-G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~  235 (320)
                      .+..++++|.|   +..++.+.++.++++.+.+.+....+|.++. .+++|++-..|++..+..    ..+.....+.+.
T Consensus       185 ~~~~v~eiMtPR~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~iiGiv~~kdl~~~~~~----~~~~~~~~l~~~  260 (413)
T PRK11573        185 EKVTVDDIMVPRNEIIGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAWRLMTE----KKEFTKETMLRA  260 (413)
T ss_pred             CCCEEHEEEEECCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEHHHHHHHHC----CCCCCHHHHHHH
T ss_conf             8989011862002268974789999999986633875425854788865999982577877642----666887888751


Q ss_pred             CCCEEEEECCCCHHHHHHHHCC---CCCC----CCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             7733783045359999998288---8887----77746743179999998423473798
Q gi|254780426|r  236 SDNTFIVDARTDLEELAKIIGT---DCNC----LKGEQDVDSLGGLIFSVLDRIPARGE  287 (320)
Q Consensus       236 ~~g~~~v~G~~~l~~l~~~l~~---~l~~----~~~~~~~~Ti~G~i~~~l~~iP~~Ge  287 (320)
                      ...-+.|+-.+++.++-+.|.-   ++..    .+.-...-|+-..+=+..|.+....+
T Consensus       261 ~~~~~fVpe~~~~~~lL~~~~~~~~h~AiVvDEyGg~~GiVTlEDilEeivGei~de~d  319 (413)
T PRK11573        261 ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMS  319 (413)
T ss_pred             CCCCEEECCCCHHHHHHHHHHHHCCEEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCC
T ss_conf             47877968989099999998842863799994899888995499999998387755567


No 190
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=94.04  E-value=0.19  Score=29.28  Aligned_cols=55  Identities=22%  Similarity=0.361  Sum_probs=47.9

Q ss_pred             HHHHC-CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHH
Q ss_conf             78851-565797178851232343201356511654077662046675889999874
Q gi|254780426|r  164 ESNLI-KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMR  219 (320)
Q Consensus       164 l~~~~-r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivG  219 (320)
                      ...+| +|++++.+..++.+++..|+..+..-..|+++ |.++|-||-.||...+.-
T Consensus        67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le  122 (187)
T COG3620          67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLE  122 (187)
T ss_pred             HHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCEEEC-CEEEEEECHHHHHHHHHC
T ss_conf             76653587058772466999999999759752754108-864533149899999730


No 191
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=93.97  E-value=0.3  Score=28.04  Aligned_cols=59  Identities=15%  Similarity=0.221  Sum_probs=49.5

Q ss_pred             CCCCHHHHCCC---CEEECCCCCHHHHHHHHHCCCCCCEEEEECC-CCCEEEEEHHHHHHHHH
Q ss_conf             45767885156---5797178851232343201356511654077-66204667588999987
Q gi|254780426|r  160 IQLSESNLIKN---ILFVPSSMLVSDLLTNIQESRIRMALVIDEH-GGTDGLVSYEDIVSVLM  218 (320)
Q Consensus       160 ~~~~l~~~~r~---~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~-G~~~GiVTleDIle~iv  218 (320)
                      .+...+++|.|   +.+++.++++.++++.+++.+....+|.++. ..+.|++...|++..+-
T Consensus       189 ~~~~v~eiMtPr~~v~~l~~~~~~~e~~~~~~~~~~SR~PV~~~~~D~iiGiv~~kDll~~~~  251 (408)
T TIGR03520       189 GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN  251 (408)
T ss_pred             CCCEEHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEEHHHHHHHHH
T ss_conf             998903423545795884064438999999985798722266589876179977989987873


No 192
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857    This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=93.11  E-value=0.13  Score=30.36  Aligned_cols=90  Identities=17%  Similarity=0.240  Sum_probs=65.4

Q ss_pred             CCCCEEECCCCCHHHHHHHHHCCCCCCEEEEE--------CCCCCEEEEEHHHHHHHHHHHHHHHCCC-H--HHCCCCCC
Q ss_conf             15657971788512323432013565116540--------7766204667588999987422210000-0--00012467
Q gi|254780426|r  168 IKNILFVPSSMLVSDLLTNIQESRIRMALVID--------EHGGTDGLVSYEDIVSVLMRDITSEHHS-K--KSMISAVS  236 (320)
Q Consensus       168 ~r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvD--------E~G~~~GiVTleDIle~ivGei~de~d~-~--~~~i~~~~  236 (320)
                      +.+++.+.++.++-++.+.+|+.+..-+.||+        |-|.+.|.||+..+|..++-.=....|. .  .-++..+.
T Consensus       373 L~~~v~~~~t~tv~~ai~iLre~GfdQ~PVv~pga~~P~veag~v~G~v~l~~lL~~l~~~~a~~~D~v~Gkyldfk~~~  452 (527)
T TIGR01137       373 LPALVTVHPTETVGDAIEILREYGFDQLPVVKPGAAEPDVEAGKVLGSVTLRELLSALFAKKAKLEDAVSGKYLDFKVMS  452 (527)
T ss_pred             CCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf             88734546764089999999974873076207788889723534788742677899998424675544343000344453


Q ss_pred             ---------------CCEEEEECCCCHHHHHHHHCC
Q ss_conf             ---------------733783045359999998288
Q gi|254780426|r  237 ---------------DNTFIVDARTDLEELAKIIGT  257 (320)
Q Consensus       237 ---------------~g~~~v~G~~~l~~l~~~l~~  257 (320)
                                     .--.-+.-..+|.++++.|+-
T Consensus       453 ~Fndvssynenk~~~~~~~~i~~~~~l~~L~~~le~  488 (527)
T TIGR01137       453 RFNDVSSYNENKSKKKKFIQIGEGEKLADLSKFLEK  488 (527)
T ss_pred             HHCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf             210100010102467676544677518999998516


No 193
>KOG2550 consensus
Probab=91.69  E-value=0.15  Score=29.95  Aligned_cols=69  Identities=14%  Similarity=0.206  Sum_probs=56.2

Q ss_pred             CCHHHHHHHHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHH
Q ss_conf             8989999999873047757641312001299986301036778979865981799841886642241029999987
Q gi|254780426|r   70 FSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISY  145 (320)
Q Consensus        70 i~~~E~~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~  145 (320)
                      +...+.+.+    .=..+.+.++|||+.  ++.+...+++++-+++.++.--++||.+++. +.+-++...||.+.
T Consensus       158 vtsrdi~f~----~~~~~~~~~vmt~~~--~~~~~gi~l~~~neiL~~~kkGkl~iv~~~g-elva~~~rtDl~k~  226 (503)
T KOG2550         158 ITSRDIQFL----EDNSLLVSDVMTKNP--VTGAQGITLKEANEILKKIKKGKLPVVDDKG-ELVAMLSRTDLMKN  226 (503)
T ss_pred             EEHHHHHHH----HCCCCHHHHHHCCCC--CCCCCCCCHHHHHHHHHHHHCCCCCEECCCC-CEEEEEEHHHHHHH
T ss_conf             742023455----345511243303443--0144446677889998763148652343677-62334333456650


No 194
>TIGR00393 kpsF sugar isomerase, KpsF/GutQ family; InterPro: IPR004800 This is a family of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. The group includes GutQ, a protein of the glucitol operon and KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of Escherichia coli.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process.
Probab=91.35  E-value=0.13  Score=30.46  Aligned_cols=85  Identities=16%  Similarity=0.239  Sum_probs=58.8

Q ss_pred             HHHHCC---CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH--HHHHHHHHHCCCHHHCCCCCCCC
Q ss_conf             788515---6579717885123234320135651165407766204667588999--98742221000000001246773
Q gi|254780426|r  164 ESNLIK---NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS--VLMRDITSEHHSKKSMISAVSDN  238 (320)
Q Consensus       164 l~~~~r---~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle--~ivGei~de~d~~~~~i~~~~~g  238 (320)
                      +.++||   .++.|-.++++.|+|-.|.+.+.-+|+|+|+.-.+.||+|=-||=.  ..+|--.  -..+-.++-..+.-
T Consensus       157 V~dlm~t~d~lP~v~~tas~~DAL~e~~~~~LG~~~v~~~~~~~~Gv~tDGD~RR~l~~~g~~~--l~~~v~~~mT~~p~  234 (272)
T TIGR00393       157 VKDLMQTDDELPLVAPTASFKDALLEMSRKRLGLAVVCDENEQLKGVFTDGDLRRVLALLGGGA--LKKEVKDFMTLGPK  234 (272)
T ss_pred             HHHHHCCCCCCCCEECCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCHHHHHHHHHCCHH--CCCCHHHHCCCCCE
T ss_conf             6776406656782223677202102331378617999715552467871465999998816600--02312221068881


Q ss_pred             EEEEECCCCHHH
Q ss_conf             378304535999
Q gi|254780426|r  239 TFIVDARTDLEE  250 (320)
Q Consensus       239 ~~~v~G~~~l~~  250 (320)
                      ++.-.+..-++-
T Consensus       235 ~~~n~~~~l~~A  246 (272)
T TIGR00393       235 TLKNSDELLVEA  246 (272)
T ss_pred             EEECHHHHHHHH
T ss_conf             340145689999


No 195
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation.   Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=90.48  E-value=0.5  Score=26.58  Aligned_cols=146  Identities=15%  Similarity=0.184  Sum_probs=86.3

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCC--CCCCCCCCCC--CHHHHC----C
Q ss_conf             2999863010367789798659817998418866422410299999876622356--4322333457--678851----5
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAK--TNNINLNIQL--SESNLI----K  169 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~--~~~~~~~~~~--~l~~~~----r  169 (320)
                      -|+++.+|.  +||+++--+     +-+..+.  +|+-+=+--++|.--.+.+-.  ....+.....  ...++.    +
T Consensus       183 TIvFitHDl--DEA~rigDR-----Ivilk~G--eiVQvGTPdeIL~NPaneyVe~F~~~~dl~qv~~P~~~~i~~~~~~  253 (372)
T TIGR01186       183 TIVFITHDL--DEALRIGDR-----IVILKAG--EIVQVGTPDEILRNPANEYVEEFIGKVDLSQVLSPDAERIAKRMNT  253 (372)
T ss_pred             EEEEEECCH--HHHHHHHHH-----HHHEECC--CEEEECCCHHHHCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHCCC
T ss_conf             089994176--788767513-----2011068--6788428468742880679998737511575238888999965277


Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCCHH
Q ss_conf             65797178851232343201356511654077662046675889999874222100000000124677337830453599
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDLE  249 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~l~  249 (320)
                      .++.+........||+.||..+..-..|||....+.|.|..+++=.+.--      +..-..  -..+.-+.|++.++|.
T Consensus       254 ~~i~~t~~~gp~~Al~Lm~~~~~~s~yvv~~~~~l~G~v~~~~~~~a~~~------~~~~~~--~l~~~~~tV~~~t~L~  325 (372)
T TIGR01186       254 VPITKTADKGPRSALKLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKK------AQSLQD--VLIDDILTVDEGTLLR  325 (372)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHHHHH------HHHHHH--HHHHCCCCCCCCCCHH
T ss_conf             32686589887899999986597179999728548877858899988878------778999--8620011105876048


Q ss_pred             HHHHHHC-CCCC
Q ss_conf             9999828-8888
Q gi|254780426|r  250 ELAKIIG-TDCN  260 (320)
Q Consensus       250 ~l~~~l~-~~l~  260 (320)
                      |+-+..+ ...+
T Consensus       326 e~~~~v~~~~~~  337 (372)
T TIGR01186       326 ELLRKVLKAGIK  337 (372)
T ss_pred             HHHHHHHHCCCC
T ss_conf             999998507995


No 196
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria.  The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair.  The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here.  It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=88.73  E-value=0.2  Score=29.18  Aligned_cols=46  Identities=20%  Similarity=0.302  Sum_probs=31.8

Q ss_pred             EECCCCCHHHHHHHHHCCCCCCEEEEE-CCCCCEEEEEHHHHHHHHH
Q ss_conf             971788512323432013565116540-7766204667588999987
Q gi|254780426|r  173 FVPSSMLVSDLLTNIQESRIRMALVID-EHGGTDGLVSYEDIVSVLM  218 (320)
Q Consensus       173 ~Vpe~~~l~~lL~~m~~~~~~~aiVvD-E~G~~~GiVTleDIle~iv  218 (320)
                      .+--..++..++..|..++...|++-| ..++++|++|..|.+..+-
T Consensus         5 V~D~~l~vk~Af~al~~ngi~~aplWds~~~~fvGmLt~~DfI~il~   51 (98)
T cd04618           5 VFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR   51 (98)
T ss_pred             EEECCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEHHHHHHHHH
T ss_conf             99489758999999998692699987288767888864799998876


No 197
>KOG0476 consensus
Probab=85.78  E-value=1.3  Score=23.78  Aligned_cols=62  Identities=13%  Similarity=0.198  Sum_probs=48.2

Q ss_pred             CCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECC-CCCCCCCCEEHHHHHHHHHH
Q ss_conf             77576413120012999863010367789798659817998418-86642241029999987662
Q gi|254780426|r   85 RKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKN-SLDNPRGMVHMRDVISYISH  148 (320)
Q Consensus        85 ~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~-~~d~iiGiv~~kDll~~~~~  148 (320)
                      ..+.|+++|+  ++|.++-.+.|+.|+.+.+..+...-||+.+. +.--.+|.|..+.|..++..
T Consensus       586 h~v~VE~iMV--~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~  648 (931)
T KOG0476         586 HTVKVEHIMV--TDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR  648 (931)
T ss_pred             EEEEEEEECC--CCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHH
T ss_conf             6887430012--45204533573999999997375320144358644233016379999999985


No 198
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=85.09  E-value=0.93  Score=24.81  Aligned_cols=41  Identities=22%  Similarity=0.319  Sum_probs=31.7

Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             78851232343201356511654077662046675889999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      ......+++..|-......+.|+|+.|...|.||..|++..
T Consensus       268 ~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         268 EGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE  308 (309)
T ss_pred             CCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHH
T ss_conf             10445899999986687246788799967658879987523


No 199
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=82.33  E-value=1.8  Score=22.89  Aligned_cols=47  Identities=15%  Similarity=0.196  Sum_probs=17.3

Q ss_pred             CEEEEECCCC-HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf             3378304535-9999998288888777746743179999998423473
Q gi|254780426|r  238 NTFIVDARTD-LEELAKIIGTDCNCLKGEQDVDSLGGLIFSVLDRIPA  284 (320)
Q Consensus       238 g~~~v~G~~~-l~~l~~~l~~~l~~~~~~~~~~Ti~G~i~~~l~~iP~  284 (320)
                      |-|+++|... ++++.+.|+-.-...-.+.+.+++||++-..|..+|+
T Consensus        40 GIFRisG~~~~i~~lk~~~d~~~~~~l~~~d~h~vA~lLK~fLReLPe   87 (182)
T cd04381          40 GIYKVSGIKSKVDELKAAYNRRESPNLEEYEPPTVASLLKQYLRELPE   87 (182)
T ss_pred             CEEECCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             704578979999999999806899980005789999999999984998


No 200
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=82.26  E-value=2.1  Score=22.55  Aligned_cols=14  Identities=21%  Similarity=0.425  Sum_probs=5.3

Q ss_pred             CCHHHHHHHHCCCC
Q ss_conf             35999999828888
Q gi|254780426|r  246 TDLEELAKIIGTDC  259 (320)
Q Consensus       246 ~~l~~l~~~l~~~l  259 (320)
                      |..+.+.-.||=++
T Consensus       146 M~~~NLAivf~P~L  159 (187)
T cd04389         146 MDVSNLAMVFAPNI  159 (187)
T ss_pred             CCHHHHHHHHCCHH
T ss_conf             98777699862430


No 201
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=80.64  E-value=2.1  Score=22.46  Aligned_cols=11  Identities=36%  Similarity=0.244  Sum_probs=4.1

Q ss_pred             CCHHHHHHHHC
Q ss_conf             35999999828
Q gi|254780426|r  246 TDLEELAKIIG  256 (320)
Q Consensus       246 ~~l~~l~~~l~  256 (320)
                      |....+.-.|+
T Consensus       143 M~~~NLAivf~  153 (192)
T cd04402         143 MDAFNLAVCIA  153 (192)
T ss_pred             CCHHHHHHHHH
T ss_conf             97899999961


No 202
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=77.91  E-value=3.5  Score=21.09  Aligned_cols=48  Identities=17%  Similarity=0.324  Sum_probs=18.0

Q ss_pred             CCEEEEECCCC-HHHHHHHHCCCCCC-CCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf             73378304535-99999982888887-77746743179999998423473
Q gi|254780426|r  237 DNTFIVDARTD-LEELAKIIGTDCNC-LKGEQDVDSLGGLIFSVLDRIPA  284 (320)
Q Consensus       237 ~g~~~v~G~~~-l~~l~~~l~~~l~~-~~~~~~~~Ti~G~i~~~l~~iP~  284 (320)
                      +|-|+++|... ++++.+.++.+... ...+.+++|+||++-..|..+|+
T Consensus        34 eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~v~~vaslLK~fLReLPe   83 (186)
T cd04406          34 EGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQWLRDLPN   83 (186)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             88044068799999999997259987886646789999999999984899


No 203
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=75.59  E-value=4.1  Score=20.63  Aligned_cols=39  Identities=3%  Similarity=0.118  Sum_probs=15.7

Q ss_pred             CCHHHHHHHHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHH
Q ss_conf             89899999998730477576413120012999863010367789
Q gi|254780426|r   70 FSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAML  113 (320)
Q Consensus        70 i~~~E~~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~  113 (320)
                      +++.--..|.+++++=++   .+.+  .-+.-++.+.+--+.++
T Consensus         5 ~~~~~~~~i~~~I~~le~---~l~~--EGIFRvsGs~~~i~~Lk   43 (208)
T cd04392           5 LTEEGIAQIYQLIEYLEK---NLRV--EGLFRKPGNSARQQELR   43 (208)
T ss_pred             CCHHHHHHHHHHHHHHHH---CCCC--CCCEECCCCHHHHHHHH
T ss_conf             767689999999999983---8997--28412788799999999


No 204
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=75.45  E-value=2.8  Score=21.68  Aligned_cols=102  Identities=11%  Similarity=0.012  Sum_probs=64.7

Q ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHH
Q ss_conf             99998763378888899999999997997689898999999987304775764131200129998630103677897986
Q gi|254780426|r   38 TIRALCKTWKLMKLSHHKGIRLPRIDASLEGIFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEK  117 (320)
Q Consensus        38 ~~~~~~~~~~~~~~~~~eel~~l~~~~~~~G~i~~~E~~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~  117 (320)
                      .++.+-.-||..+ .+++|++.+...++++ .+...+-.+.+=.|-|  ++|+.-|.  .++..+..=.-+.+++..+.+
T Consensus        83 I~NrLA~eFGY~P-i~~~dl~~LrnlsaRe-IIk~SgIs~~KiPflL--krVk~el~--~~i~~l~pf~GI~e~L~~L~~  156 (273)
T PRK13225         83 IANAHAPDFGYDP-IDERDYAQLRQWSSRT-IVRRAGLSPWQQARLL--QRVQRQLG--DCLPALQLFPGVADLLAQLRS  156 (273)
T ss_pred             HHHHHHHHCCCCC-CCHHHHHHHHCCCHHH-HHHHHCCCHHHHHHHH--HHHHHHHH--HHCCCCCCCCCHHHHHHHHHH
T ss_conf             9999899739899-9989999996478999-9998489877768999--99999998--404304567777999999997


Q ss_pred             CCCCEEEEECCCCCCCCCCEEHHHHHHH
Q ss_conf             5981799841886642241029999987
Q gi|254780426|r  118 YGRSWMPVYKNSLDNPRGMVHMRDVISY  145 (320)
Q Consensus       118 ~~~sR~PV~~~~~d~iiGiv~~kDll~~  145 (320)
                      .||..--|..++.+||.-++..-.|...
T Consensus       157 ~G~~LGIITSNs~~NV~~fL~~~~L~~l  184 (273)
T PRK13225        157 RSLCLGILSSNSRQNIEAFLQRQGLRSL  184 (273)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf             7967999706828899999986238988


No 205
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=73.63  E-value=4.6  Score=20.26  Aligned_cols=48  Identities=15%  Similarity=0.342  Sum_probs=18.0

Q ss_pred             CCEEEEECCCC-HHHHHHHHCCCCC-CCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf             73378304535-9999998288888-777746743179999998423473
Q gi|254780426|r  237 DNTFIVDARTD-LEELAKIIGTDCN-CLKGEQDVDSLGGLIFSVLDRIPA  284 (320)
Q Consensus       237 ~g~~~v~G~~~-l~~l~~~l~~~l~-~~~~~~~~~Ti~G~i~~~l~~iP~  284 (320)
                      +|-|+++|... ++.+.+.++.+-. ....+.+.+|+||++...|..+|+
T Consensus        34 eGIfR~~G~~~~i~~l~~~~~~~~~~~~~~~~~vh~va~lLK~fLReLpe   83 (186)
T cd04407          34 EGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQWLRELPE   83 (186)
T ss_pred             CCCEECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             99515898899999999998069865674558789999999999982898


No 206
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=72.50  E-value=4.9  Score=20.08  Aligned_cols=16  Identities=13%  Similarity=0.283  Sum_probs=7.1

Q ss_pred             CCCCHHHHHHHHCCCC
Q ss_conf             4535999999828888
Q gi|254780426|r  244 ARTDLEELAKIIGTDC  259 (320)
Q Consensus       244 G~~~l~~l~~~l~~~l  259 (320)
                      -.|....+.-.|+=.+
T Consensus       155 NkMt~~NLAivf~P~L  170 (200)
T cd04408         155 NKMSPNNLGIVFGPTL  170 (200)
T ss_pred             CCCCHHHHHHHHHHHH
T ss_conf             2798799999951050


No 207
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=72.44  E-value=5  Score=20.02  Aligned_cols=15  Identities=13%  Similarity=0.408  Sum_probs=5.3

Q ss_pred             CCHHHHHHHHHCCCC
Q ss_conf             317999999842347
Q gi|254780426|r  269 DSLGGLIFSVLDRIP  283 (320)
Q Consensus       269 ~Ti~G~i~~~l~~iP  283 (320)
                      +++||++...|..+|
T Consensus        70 h~va~lLK~flReLP   84 (184)
T cd04385          70 HDVADVLKRFLRDLP   84 (184)
T ss_pred             HHHHHHHHHHHHHCC
T ss_conf             899999999997099


No 208
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=69.12  E-value=7.7  Score=18.82  Aligned_cols=11  Identities=36%  Similarity=0.588  Sum_probs=3.8

Q ss_pred             CCHHHHHHHHC
Q ss_conf             35999999828
Q gi|254780426|r  246 TDLEELAKIIG  256 (320)
Q Consensus       246 ~~l~~l~~~l~  256 (320)
                      |....+.-.|+
T Consensus       150 M~~~NLAivfa  160 (189)
T cd04393         150 MTAENLAAVFG  160 (189)
T ss_pred             CCHHHHHHHHC
T ss_conf             98787399864


No 209
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=68.84  E-value=7.4  Score=18.91  Aligned_cols=49  Identities=18%  Similarity=0.342  Sum_probs=24.5

Q ss_pred             CCEEEEECCCC-HHHHHHHHCCCCCC----CCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf             73378304535-99999982888887----777467431799999984234737
Q gi|254780426|r  237 DNTFIVDARTD-LEELAKIIGTDCNC----LKGEQDVDSLGGLIFSVLDRIPAR  285 (320)
Q Consensus       237 ~g~~~v~G~~~-l~~l~~~l~~~l~~----~~~~~~~~Ti~G~i~~~l~~iP~~  285 (320)
                      +|-|+++|... ++++.+.|+.+.+.    .....+.+++||++-..|..+|+.
T Consensus        42 EGIFR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~~dvh~va~lLK~flReLPep   95 (190)
T cd04400          42 EGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHTVAGLLKLYLRELPTL   95 (190)
T ss_pred             CCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             741213786999999999985689988554434477799999999998619988


No 210
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=67.14  E-value=7.9  Score=18.74  Aligned_cols=16  Identities=13%  Similarity=0.409  Sum_probs=6.5

Q ss_pred             CCCHHHHHHHHHCCCC
Q ss_conf             4317999999842347
Q gi|254780426|r  268 VDSLGGLIFSVLDRIP  283 (320)
Q Consensus       268 ~~Ti~G~i~~~l~~iP  283 (320)
                      .+++||++...|..+|
T Consensus        70 ~h~va~lLK~fLReLP   85 (187)
T cd04403          70 IHVITGALKLFFRELP   85 (187)
T ss_pred             HHHHHHHHHHHHHHCC
T ss_conf             8999999999998589


No 211
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=66.74  E-value=8.5  Score=18.53  Aligned_cols=49  Identities=18%  Similarity=0.251  Sum_probs=22.2

Q ss_pred             CCEEEEECCCC-HHHHHHHHCCCCC----CCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf             73378304535-9999998288888----7777467431799999984234737
Q gi|254780426|r  237 DNTFIVDARTD-LEELAKIIGTDCN----CLKGEQDVDSLGGLIFSVLDRIPAR  285 (320)
Q Consensus       237 ~g~~~v~G~~~-l~~l~~~l~~~l~----~~~~~~~~~Ti~G~i~~~l~~iP~~  285 (320)
                      +|-|+++|... ++++.+.|+.+-.    ....+.+++++||++...|..+|++
T Consensus        51 EGIfRvsG~~~~I~~Lk~~fd~~~~~~~~~~~~~~~vh~vA~lLK~fLReLPeP  104 (225)
T cd04396          51 EGIFRVAGSSKRIRELQLIFSTPPDYGKSFDWDGYTVHDAASVLRRYLNNLPEP  104 (225)
T ss_pred             CCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             880268987999999999976686546677854387999999999999838986


No 212
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=66.71  E-value=9.8  Score=18.12  Aligned_cols=79  Identities=18%  Similarity=0.233  Sum_probs=46.2

Q ss_pred             CCCCEEEEECC-CC---CEEEEEHHHHHHHHHHHH-HHHCCCHHHCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCC
Q ss_conf             56511654077-66---204667588999987422-21000000001246773378304535999999828888877774
Q gi|254780426|r  191 RIRMALVIDEH-GG---TDGLVSYEDIVSVLMRDI-TSEHHSKKSMISAVSDNTFIVDARTDLEELAKIIGTDCNCLKGE  265 (320)
Q Consensus       191 ~~~~aiVvDE~-G~---~~GiVTleDIle~ivGei-~de~d~~~~~i~~~~~g~~~v~G~~~l~~l~~~l~~~l~~~~~~  265 (320)
                      ..++..|.++| |+   +.|++|=.||++++-|.. .|.-= -....-+.+++.|+  -.++++++.+.+|.....    
T Consensus       348 ~i~v~~I~N~fFG~~vtVtGLLTG~Dii~~L~~~~lgd~ll-iP~vmL~~g~~vfL--DD~t~~~l~~~L~~~V~v----  420 (433)
T TIGR03279       348 ELDLHGLASDYWGQEITVTGLLTGQDLIAGLKGKDLGDGLL-LPSVMLKHGELVFL--DDLTVEEVAEALGTPIRV----  420 (433)
T ss_pred             EEEEEEECCCCCCCCEEEEECCCHHHHHHHHCCCCCCCEEE-ECHHHHCCCCCEEC--CCCCHHHHHHHCCCCEEE----
T ss_conf             79999935688899833722533899999867998898699-62799468997378--989899999870997899----


Q ss_pred             CCCCCHHHHHHHH
Q ss_conf             6743179999998
Q gi|254780426|r  266 QDVDSLGGLIFSV  278 (320)
Q Consensus       266 ~~~~Ti~G~i~~~  278 (320)
                        +++-+.|+-..
T Consensus       421 --v~~~~d~v~~~  431 (433)
T TIGR03279       421 --VAGGADLLEHA  431 (433)
T ss_pred             --ECCHHHHHHHH
T ss_conf             --67899999997


No 213
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=66.70  E-value=4.5  Score=20.34  Aligned_cols=37  Identities=16%  Similarity=0.289  Sum_probs=28.8

Q ss_pred             CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHH
Q ss_conf             103677897986598179984188664224102999998
Q gi|254780426|r  106 ATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVIS  144 (320)
Q Consensus       106 ~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~  144 (320)
                      ..++.+.+.+.+.|-+-++||+++  .+.|++|.||+++
T Consensus       413 ~~l~~~~~~vs~~GGTPL~V~~~~--~~~GVI~LkDivK  449 (681)
T COG2216         413 EDLDAAVDEVSRLGGTPLVVVENG--RILGVIYLKDIVK  449 (681)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECC--EEEEEEEEHHHCC
T ss_conf             789999999985589744998899--9999998643135


No 214
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=66.38  E-value=7.5  Score=18.89  Aligned_cols=19  Identities=11%  Similarity=0.389  Sum_probs=8.7

Q ss_pred             CCCCHHHHHHHHHCCCCCC
Q ss_conf             7431799999984234737
Q gi|254780426|r  267 DVDSLGGLIFSVLDRIPAR  285 (320)
Q Consensus       267 ~~~Ti~G~i~~~l~~iP~~  285 (320)
                      +.+++||.+-..|..+|++
T Consensus        85 dvh~VAs~LK~yLReLPeP  103 (203)
T cd04374          85 EIKTITSALKTYLRNLPEP  103 (203)
T ss_pred             CHHHHHHHHHHHHHHCCCC
T ss_conf             5999999999999838986


No 215
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=66.29  E-value=6.4  Score=19.34  Aligned_cols=16  Identities=25%  Similarity=0.615  Sum_probs=6.4

Q ss_pred             CCCHHHHHHHHHCCCC
Q ss_conf             4317999999842347
Q gi|254780426|r  268 VDSLGGLIFSVLDRIP  283 (320)
Q Consensus       268 ~~Ti~G~i~~~l~~iP  283 (320)
                      ++|+||++-..|..+|
T Consensus        68 vh~va~lLK~fLReLP   83 (185)
T cd04373          68 VNAVAGALKSFFSELP   83 (185)
T ss_pred             HHHHHHHHHHHHHHCC
T ss_conf             9999999999998189


No 216
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=66.07  E-value=7.8  Score=18.77  Aligned_cols=13  Identities=15%  Similarity=0.429  Sum_probs=4.1

Q ss_pred             HHHHHHHHHCCCC
Q ss_conf             7999999842347
Q gi|254780426|r  271 LGGLIFSVLDRIP  283 (320)
Q Consensus       271 i~G~i~~~l~~iP  283 (320)
                      +||++...|..+|
T Consensus        76 va~lLK~flReLP   88 (192)
T cd04398          76 VASLLKLFFRELP   88 (192)
T ss_pred             HHHHHHHHHHHCC
T ss_conf             9999999998689


No 217
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=65.89  E-value=8.1  Score=18.68  Aligned_cols=15  Identities=13%  Similarity=0.308  Sum_probs=6.4

Q ss_pred             CCCHHHHHHHHCCCC
Q ss_conf             535999999828888
Q gi|254780426|r  245 RTDLEELAKIIGTDC  259 (320)
Q Consensus       245 ~~~l~~l~~~l~~~l  259 (320)
                      .|....+.-.|+=.+
T Consensus       158 kM~~~NLAivf~P~L  172 (203)
T cd04378         158 KMSPNNLGIVFGPTL  172 (203)
T ss_pred             CCCHHHHHHHHCCHH
T ss_conf             698798699971152


No 218
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of:  i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with  beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=65.85  E-value=8.1  Score=18.66  Aligned_cols=15  Identities=27%  Similarity=0.527  Sum_probs=5.9

Q ss_pred             CCCHHHHHHHHCCCC
Q ss_conf             535999999828888
Q gi|254780426|r  245 RTDLEELAKIIGTDC  259 (320)
Q Consensus       245 ~~~l~~l~~~l~~~l  259 (320)
                      .|+...+.-.||=.+
T Consensus       146 kMt~~NLAivfgP~L  160 (196)
T cd04387         146 KMSLHNLATVFGPTL  160 (196)
T ss_pred             CCCHHHHHHHHHHHC
T ss_conf             798999699983004


No 219
>TIGR01497 kdpB K+-transporting ATPase, B subunit; InterPro: IPR006391   These sequences describe the P-type ATPase subunit of the complex responsible for translocating potassium ions across biological membranes in microbes. In Escherichia coli and other species, this complex consists of the proteins KdpA, KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while KdpA is the potassium-ion translocating subunit . The function of KdpC is unclear, although it has been suggested to couple the ATPase subunit to the ion-translocating subunit , while KdpF serves to stabilize the complex . The potassium P-type ATPases have been characterised as Type IA based on a phylogenetic analysis which places this clade closest to the heavy-metal translocating ATPases (Type IB) . Others place this clade closer to the Na+/K+ antiporter type (Type IIC) based on physical characteristics . ; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016021 integral to membrane.
Probab=65.64  E-value=3.4  Score=21.15  Aligned_cols=38  Identities=18%  Similarity=0.279  Sum_probs=31.8

Q ss_pred             CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHH
Q ss_conf             0103677897986598179984188664224102999998
Q gi|254780426|r  105 KATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVIS  144 (320)
Q Consensus       105 ~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~  144 (320)
                      ...++++.+++.+.|=+=+-||.++  +|.|+++.||+.+
T Consensus       411 p~dlD~av~qVa~~GgTPLvVc~dn--~iyGVIyLKDiVK  448 (675)
T TIGR01497       411 PKDLDEAVDQVAKQGGTPLVVCVDN--KIYGVIYLKDIVK  448 (675)
T ss_pred             CHHHHHHHHHHHHCCCCCEEEEECC--EEEEEEEEECCCC
T ss_conf             8376788999873289847999757--7898898730137


No 220
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=65.46  E-value=8.3  Score=18.58  Aligned_cols=15  Identities=7%  Similarity=0.262  Sum_probs=6.4

Q ss_pred             CCCHHHHHHHHCCCC
Q ss_conf             535999999828888
Q gi|254780426|r  245 RTDLEELAKIIGTDC  259 (320)
Q Consensus       245 ~~~l~~l~~~l~~~l  259 (320)
                      .|....+.-.|+=.+
T Consensus       150 kM~~~NLAivf~P~L  164 (203)
T cd04386         150 KMSPSNIAIVLAPNL  164 (203)
T ss_pred             CCCHHHHHHHHCCCC
T ss_conf             575535377714530


No 221
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=65.37  E-value=8.7  Score=18.45  Aligned_cols=11  Identities=27%  Similarity=0.489  Sum_probs=3.8

Q ss_pred             CCHHHHHHHHC
Q ss_conf             35999999828
Q gi|254780426|r  246 TDLEELAKIIG  256 (320)
Q Consensus       246 ~~l~~l~~~l~  256 (320)
                      |....+.-.|+
T Consensus       150 M~~~NLaivf~  160 (196)
T cd04395         150 MEPRNLAIVFG  160 (196)
T ss_pred             CCHHHHHHHHC
T ss_conf             97567788833


No 222
>KOG4269 consensus
Probab=64.63  E-value=7.1  Score=19.05  Aligned_cols=50  Identities=18%  Similarity=0.407  Sum_probs=38.7

Q ss_pred             CCCEEEEECCC-CHHHHHHHHCCC----CCCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf             77337830453-599999982888----887777467431799999984234737
Q gi|254780426|r  236 SDNTFIVDART-DLEELAKIIGTD----CNCLKGEQDVDSLGGLIFSVLDRIPAR  285 (320)
Q Consensus       236 ~~g~~~v~G~~-~l~~l~~~l~~~----l~~~~~~~~~~Ti~G~i~~~l~~iP~~  285 (320)
                      ..|-|.++|.. .|..|.++|+-+    +.....+-+++||||++--+|..+|+.
T Consensus       938 EeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E~dVn~IaGlLKLYlR~LP~~  992 (1112)
T KOG4269         938 EEGIYRLSGSATDIKALKEQFDENVNKDILSMDSEMDVNAIAGLLKLYLRELPEP  992 (1112)
T ss_pred             HHCEEEECCCHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             2044773250778999999860124600332012003899888999999858840


No 223
>TIGR02475 CobW cobalamin biosynthesis protein CobW; InterPro: IPR012824   Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase .    There are at least two distinct cobalamin biosynthetic pathways in bacteria :  Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii.     Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans.   This entry represents CobW proteins, which are generally found proximal to the trimeric cobaltochelatase subunit CobN, an essential protein for vitamin B12 (cobalamin) biosynthesis . They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids.; GO: 0009236 cobalamin biosynthetic process.
Probab=64.36  E-value=2.7  Score=21.79  Aligned_cols=27  Identities=30%  Similarity=0.624  Sum_probs=16.9

Q ss_pred             CCHHHHHHHHHCCCCCCEEEEECCCCCEEE
Q ss_conf             851232343201356511654077662046
Q gi|254780426|r  178 MLVSDLLTNIQESRIRMALVIDEHGGTDGL  207 (320)
Q Consensus       178 ~~l~~lL~~m~~~~~~~aiVvDE~G~~~Gi  207 (320)
                      |-+-.+|+  -.++.++|++|||||.+ ||
T Consensus        19 TLiRhlL~--NA~GkRiAvIVNEFGd~-Gi   45 (349)
T TIGR02475        19 TLIRHLLE--NAEGKRIAVIVNEFGDL-GI   45 (349)
T ss_pred             HHHHHHHH--CCCCCEEEEEEECCCCC-CC
T ss_conf             99999971--74787699998525560-63


No 224
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=64.16  E-value=9.6  Score=18.18  Aligned_cols=10  Identities=30%  Similarity=0.451  Sum_probs=3.1

Q ss_pred             CHHHHHHHHC
Q ss_conf             5999999828
Q gi|254780426|r  247 DLEELAKIIG  256 (320)
Q Consensus       247 ~l~~l~~~l~  256 (320)
                      ....+.-.|+
T Consensus       152 ~~~NLAivf~  161 (195)
T cd04404         152 TNSNLAVVFG  161 (195)
T ss_pred             CHHHHHHHHC
T ss_conf             8888399861


No 225
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=62.59  E-value=10  Score=18.00  Aligned_cols=11  Identities=18%  Similarity=0.250  Sum_probs=3.6

Q ss_pred             CCHHHHHHHHC
Q ss_conf             35999999828
Q gi|254780426|r  246 TDLEELAKIIG  256 (320)
Q Consensus       246 ~~l~~l~~~l~  256 (320)
                      |....+.-.|+
T Consensus       129 M~~~nLa~vf~  139 (169)
T cd00159         129 MTASNLAIVFA  139 (169)
T ss_pred             CCHHHHHHHHH
T ss_conf             98899999984


No 226
>pfam04459 DUF512 Protein of unknown function (DUF512). Family of uncharacterized prokaryotic proteins.
Probab=62.54  E-value=12  Score=17.61  Aligned_cols=69  Identities=19%  Similarity=0.318  Sum_probs=38.6

Q ss_pred             CCCCEEEEECC-CC---CEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCCHHHHHHHHCCCCCC
Q ss_conf             56511654077-66---2046675889999874222100000000124677337830453599999982888887
Q gi|254780426|r  191 RIRMALVIDEH-GG---TDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDLEELAKIIGTDCNC  261 (320)
Q Consensus       191 ~~~~aiVvDE~-G~---~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~l~~l~~~l~~~l~~  261 (320)
                      ..++..|.++| |+   +.|++|-.||+++|-+.-.-+.=--....-+.+++.+ +| .++++++.+.+|.....
T Consensus       127 ~v~v~~v~N~fFG~~vtVaGLLTg~Dii~~L~~~~lgd~lliP~~ml~~~~~~f-LD-D~t~eel~~~lg~~v~v  199 (205)
T pfam04459       127 TVNVVAVKNDFFGETITVAGLLTGQDIIEELDGKELGDTLLLPGVMLKHGEEVF-LD-DMTVEELEEALGVPVIV  199 (205)
T ss_pred             EEEEEEECCCCCCCCEEEEEEEEHHHHHHHHCCCCCCCEEEECHHHHCCCCCEE-CC-CCCHHHHHHHHCCCEEE
T ss_conf             699999533665785358761015899999668888978995689957899756-89-99899999983997899


No 227
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=61.01  E-value=11  Score=17.86  Aligned_cols=11  Identities=36%  Similarity=0.329  Sum_probs=3.8

Q ss_pred             CCHHHHHHHHC
Q ss_conf             35999999828
Q gi|254780426|r  246 TDLEELAKIIG  256 (320)
Q Consensus       246 ~~l~~l~~~l~  256 (320)
                      |....+.-.|+
T Consensus       149 M~~~NLAivfa  159 (188)
T cd04383         149 MDPYNLAICFG  159 (188)
T ss_pred             CCHHHHHHHHH
T ss_conf             99788299882


No 228
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=60.61  E-value=12  Score=17.62  Aligned_cols=15  Identities=27%  Similarity=0.379  Sum_probs=6.1

Q ss_pred             CCCHHHHHHHHCCCC
Q ss_conf             535999999828888
Q gi|254780426|r  245 RTDLEELAKIIGTDC  259 (320)
Q Consensus       245 ~~~l~~l~~~l~~~l  259 (320)
                      .|....+.-.|+=.+
T Consensus       147 kM~~~NLAivf~P~L  161 (206)
T cd04376         147 KMTSLNLATIFGPNL  161 (206)
T ss_pred             CCCHHHHHHHHHHHH
T ss_conf             897288789645021


No 229
>PRK06769 hypothetical protein; Validated
Probab=58.51  E-value=7.4  Score=18.91  Aligned_cols=77  Identities=16%  Similarity=0.141  Sum_probs=48.8

Q ss_pred             HHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHH-HHHHHCC-CHHHCCCCCCCCEEEEECCCCHHHHHHHHCC
Q ss_conf             1232343201356511654077662046675889999874-2221000-0000012467733783045359999998288
Q gi|254780426|r  180 VSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMR-DITSEHH-SKKSMISAVSDNTFIVDARTDLEELAKIIGT  257 (320)
Q Consensus       180 l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivG-ei~de~d-~~~~~i~~~~~g~~~v~G~~~l~~l~~~l~~  257 (320)
                      +.+++..+++.+..+.+|-+..|---|+.|.+|+.+++-| .+.+-+- ..    ..-+.-.++=++.--+....+.+++
T Consensus        33 ~~~ai~~L~~~g~~i~vvTNQsgI~rG~~t~~d~~~~l~~~~id~iy~CPh----~~~~~c~cRKP~pGMi~~a~~~~~i  108 (175)
T PRK06769         33 TKASLQKLKAKNIKIFSFTNQPGIADGIATVADFVQELKGFGFDDIYVCPH----KHGDGCECRKPSTGMLLQAAEKHGL  108 (175)
T ss_pred             HHHHHHHHHHCCCEEEEEECCCHHCCCCCCHHHHHHHHCCCCCCEEEECCC----CCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf             899999999869959999688211368779999999974999898998899----9967898989987899999998098


Q ss_pred             CCC
Q ss_conf             888
Q gi|254780426|r  258 DCN  260 (320)
Q Consensus       258 ~l~  260 (320)
                      ++.
T Consensus       109 dl~  111 (175)
T PRK06769        109 DLT  111 (175)
T ss_pred             CHH
T ss_conf             666


No 230
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=57.09  E-value=14  Score=17.01  Aligned_cols=24  Identities=25%  Similarity=0.392  Sum_probs=11.2

Q ss_pred             CCCCCCEEEEECCCCCEEEEEHHHHH
Q ss_conf             13565116540776620466758899
Q gi|254780426|r  189 ESRIRMALVIDEHGGTDGLVSYEDIV  214 (320)
Q Consensus       189 ~~~~~~aiVvDE~G~~~GiVTleDIl  214 (320)
                      +.+..+|+ .+| |..+|+++.+|+.
T Consensus        95 ~~g~~vaL-~~e-g~~~ail~V~ei~  118 (390)
T PRK04149         95 KEGDEVAL-VYK-GEPYGVLEVEEIY  118 (390)
T ss_pred             CCCCEEEE-ECC-CCEEEEEEEEEEE
T ss_conf             88988998-069-9689999964542


No 231
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=56.63  E-value=14  Score=17.01  Aligned_cols=16  Identities=19%  Similarity=0.360  Sum_probs=6.2

Q ss_pred             CCCHHHHHHHHHCCCC
Q ss_conf             4317999999842347
Q gi|254780426|r  268 VDSLGGLIFSVLDRIP  283 (320)
Q Consensus       268 ~~Ti~G~i~~~l~~iP  283 (320)
                      .+++||++-..|..+|
T Consensus        72 vh~vA~lLK~fLReLP   87 (195)
T cd04384          72 IHSVSSLCKLYFRELP   87 (195)
T ss_pred             HHHHHHHHHHHHHHCC
T ss_conf             7999999999998589


No 232
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114   This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=56.27  E-value=6.8  Score=19.18  Aligned_cols=62  Identities=11%  Similarity=0.226  Sum_probs=43.1

Q ss_pred             HHHHHH-HHHHHHHHHCC----CHHHCCCCCCCCEEEEE--CCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             588999-98742221000----00000124677337830--453599999982888887777467431799999
Q gi|254780426|r  210 YEDIVS-VLMRDITSEHH----SKKSMISAVSDNTFIVD--ARTDLEELAKIIGTDCNCLKGEQDVDSLGGLIF  276 (320)
Q Consensus       210 leDIle-~ivGei~de~d----~~~~~i~~~~~g~~~v~--G~~~l~~l~~~l~~~l~~~~~~~~~~Ti~G~i~  276 (320)
                      ..|+|| ||||--.--|-    .....+.+-+-|+.-.|  |.||++-=-+.|.+-     .+++|.||||...
T Consensus       198 P~~L~ESELFGHEkGAFTGA~~~~~GRFEQA~GGTLFLDEIGDMPl~~QTRLLRVL-----~~G~f~rVGG~~p  266 (471)
T TIGR01818       198 PKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDLQTRLLRVL-----ADGEFYRVGGRTP  266 (471)
T ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCEECCCCCCCCHHHHHHHHHHH-----CCCCEEEECCCEE
T ss_conf             24665543214565300010255677725348882101021678776877798864-----0786577268202


No 233
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=54.11  E-value=16  Score=16.70  Aligned_cols=11  Identities=27%  Similarity=0.440  Sum_probs=4.3

Q ss_pred             CCHHHHHHHHC
Q ss_conf             35999999828
Q gi|254780426|r  246 TDLEELAKIIG  256 (320)
Q Consensus       246 ~~l~~l~~~l~  256 (320)
                      |....+.-.|+
T Consensus       133 M~~~nLa~vfa  143 (174)
T smart00324      133 MTARNLAIVFG  143 (174)
T ss_pred             CCHHHHHHHHH
T ss_conf             98899899984


No 234
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.12  E-value=4.8  Score=20.17  Aligned_cols=126  Identities=21%  Similarity=0.248  Sum_probs=63.4

Q ss_pred             HCCCCEEECCCCCH-HHHHHHHHCCCCCCEEE-----EECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEE
Q ss_conf             51565797178851-23234320135651165-----4077662046675889999874222100000000124677337
Q gi|254780426|r  167 LIKNILFVPSSMLV-SDLLTNIQESRIRMALV-----IDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTF  240 (320)
Q Consensus       167 ~~r~~~~Vpe~~~l-~~lL~~m~~~~~~~aiV-----vDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~  240 (320)
                      ++-+|++.|++..+ .++..+-+-.+--.|+|     .|-||++.|||+..|+=.-=|--|.-..--+ ..   +.++  
T Consensus       138 IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGkV~iiAP~GFme-~a---vaEN--  211 (655)
T COG2015         138 IVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSGKVQIIAPAGFME-EA---VAEN--  211 (655)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEECCCHHHCCCCCEEEECCHHHHH-HH---HHHH--
T ss_conf             99815678288999999999765889748999612542013771001578884667413764605789-99---9875--


Q ss_pred             EEECCCCHHHHHHHHCCCCCCCCCCCCCCCHHHH--------HHHHHCCCCCCCCEEEEECCEEEEEE
Q ss_conf             8304535999999828888877774674317999--------99984234737988997589599999
Q gi|254780426|r  241 IVDARTDLEELAKIIGTDCNCLKGEQDVDSLGGL--------IFSVLDRIPARGEVVLEIPGFEIVIL  300 (320)
Q Consensus       241 ~v~G~~~l~~l~~~l~~~l~~~~~~~~~~Ti~G~--------i~~~l~~iP~~Ge~v~~~~g~~f~V~  300 (320)
                      +..|..-.+.-.-++|.-||... .+.++-==|-        ++.-..-|-+.||.. .++|..|+-.
T Consensus       212 vlAGnaM~RRa~YqyG~~Lp~g~-~G~V~~giGk~la~G~vsLiaPT~~I~~~gE~~-~iDGV~~~Fq  277 (655)
T COG2015         212 VLAGNAMSRRAQYQYGTLLPPGA-QGQVGCGIGKTLATGEVSLIAPTKIIEETGETL-TIDGVEFEFQ  277 (655)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCEEEECCEEEEECCCCEE-EEECEEEEEE
T ss_conf             44105676666643123358886-675040103322468525645567862367258-8705078996


No 235
>TIGR01969 minD_arch cell division ATPase MinD; InterPro: IPR010224   Proper placement of the bacterial cell division site requires the site-specific inactivation of other potential division sites. In Escherichia coli, selection of the correct mid-cell site is mediated by the MinC, MinD and MinE proteins. Several members of this family are found in archaeal genomes but their function is uncharacterised. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins.    This entry represents the archaeal MinD family. The exact roles of the various archaeal MinD homologs are unknown. .
Probab=48.64  E-value=6.2  Score=19.43  Aligned_cols=50  Identities=14%  Similarity=0.193  Sum_probs=22.0

Q ss_pred             ECCCCCHHHHHHHH---HCCCC-CCEEEEECCCCCEEEEEHH---HHHHH-HHHHHHH
Q ss_conf             71788512323432---01356-5116540776620466758---89999-8742221
Q gi|254780426|r  174 VPSSMLVSDLLTNI---QESRI-RMALVIDEHGGTDGLVSYE---DIVSV-LMRDITS  223 (320)
Q Consensus       174 Vpe~~~l~~lL~~m---~~~~~-~~aiVvDE~G~~~GiVTle---DIle~-ivGei~d  223 (320)
                      =||-.++.|+|+.=   ++-+. =+.+|+|-+|...+=++.+   +|||. +.|.|++
T Consensus       140 NPEi~SItDaLK~k~va~~lGt~ilG~vlNRv~~~~tel~~~eiE~iLevPVl~~vPE  197 (258)
T TIGR01969       140 NPEISSITDALKVKIVAEKLGTAILGVVLNRVTRDKTELGREEIEAILEVPVLGVVPE  197 (258)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHCCCEEEEECC
T ss_conf             7654467778899999876088324689960236666378889998847973898569


No 236
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=47.82  E-value=15  Score=16.97  Aligned_cols=70  Identities=13%  Similarity=-0.015  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHCCCCE-EEHHEEECCCEEEEEEECCCHHHHHHHH
Q ss_conf             8899999999997997689--------------898999999987304775-7641312001299986301036778979
Q gi|254780426|r   51 LSHHKGIRLPRIDASLEGI--------------FSETEKEIFNNILRFRKI-RIDDIMISRVSINAVEDKATVYEAMLMF  115 (320)
Q Consensus        51 ~~~~eel~~l~~~~~~~G~--------------i~~~E~~ii~~vl~l~~~-~v~diMtPr~~i~~i~~~~~~~e~~~~i  115 (320)
                      ..+.||+..++....+.|.              -.+....+   ++++..+ ++.+| -|-...+.+.+.....++.+.+
T Consensus        62 P~s~eeV~~iv~~a~~~~ipvvprGggTgL~Gga~p~~~gI---vl~l~rmn~Ilei-d~~~~~v~VeaGv~~~~l~~~l  137 (499)
T PRK11230         62 PKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLEKGV---LLVMARFNRILDI-DPVGRRARVQPGVRNLAISQAA  137 (499)
T ss_pred             ECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEE---EEEECCCCCEEEE-ECCCCEEEEECCCCHHHHHHHH
T ss_conf             09999999999999987990999789832265812689829---9980012770688-2689979994581079999989


Q ss_pred             HHCCCCEEEE
Q ss_conf             8659817998
Q gi|254780426|r  116 EKYGRSWMPV  125 (320)
Q Consensus       116 ~~~~~sR~PV  125 (320)
                      .++|+. ||.
T Consensus       138 ~~~Gl~-~p~  146 (499)
T PRK11230        138 APHGLY-YAP  146 (499)
T ss_pred             HHCCCC-CCC
T ss_conf             866985-488


No 237
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=47.44  E-value=21  Score=16.02  Aligned_cols=12  Identities=25%  Similarity=0.576  Sum_probs=4.6

Q ss_pred             CCCHHHHHHHHC
Q ss_conf             535999999828
Q gi|254780426|r  245 RTDLEELAKIIG  256 (320)
Q Consensus       245 ~~~l~~l~~~l~  256 (320)
                      .|+...+.-.|+
T Consensus       147 kM~~~NLAivf~  158 (194)
T cd04372         147 KMNAENLGIVFG  158 (194)
T ss_pred             CCCHHHHHHHHH
T ss_conf             694999999988


No 238
>pfam00620 RhoGAP RhoGAP domain. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases.
Probab=47.11  E-value=21  Score=15.99  Aligned_cols=16  Identities=25%  Similarity=0.449  Sum_probs=5.5

Q ss_pred             CCCHHHHHHHHHCCCC
Q ss_conf             4317999999842347
Q gi|254780426|r  268 VDSLGGLIFSVLDRIP  283 (320)
Q Consensus       268 ~~Ti~G~i~~~l~~iP  283 (320)
                      .+++||++...|..+|
T Consensus        53 ~~~va~~LK~flreLp   68 (152)
T pfam00620        53 VHVVASLLKLFLRELP   68 (152)
T ss_pred             HHHHHHHHHHHHHHCC
T ss_conf             9899999999998599


No 239
>KOG4270 consensus
Probab=44.84  E-value=22  Score=15.76  Aligned_cols=51  Identities=20%  Similarity=0.261  Sum_probs=36.3

Q ss_pred             CCEEEEECCCC-HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             73378304535-9999998288888777746743179999998423473798
Q gi|254780426|r  237 DNTFIVDARTD-LEELAKIIGTDCNCLKGEQDVDSLGGLIFSVLDRIPARGE  287 (320)
Q Consensus       237 ~g~~~v~G~~~-l~~l~~~l~~~l~~~~~~~~~~Ti~G~i~~~l~~iP~~Ge  287 (320)
                      +|-|.+.|.-+ ++.+.++|+-..-.....-+++++||++-.+|..+|+.+=
T Consensus       186 EGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iDvH~~agllKayLRELPepvl  237 (577)
T KOG4270         186 EGLFRINGEASKVERLREALDCGVVPDQLYIDVHCLAGLLKAYLRELPEPVL  237 (577)
T ss_pred             CCEECCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             2111137872078999999728864663437788888999999986787677


No 240
>pfam11305 DUF3107 Protein of unknown function (DUF3107). Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=44.38  E-value=23  Score=15.72  Aligned_cols=50  Identities=12%  Similarity=0.128  Sum_probs=40.6

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEHHEEECCCEEEEEEECCCH
Q ss_conf             888899999999997997689898999999987304775764131200129998630103
Q gi|254780426|r   49 MKLSHHKGIRLPRIDASLEGIFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATV  108 (320)
Q Consensus        49 ~~~~~~eel~~l~~~~~~~G~i~~~E~~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~  108 (320)
                      ....+.+|+...+..+-..|.          .+|.|.|.+=+.+++|...+.++....+-
T Consensus        17 es~~s~~ev~~~v~~Al~~~~----------~~l~LtD~kGr~vlVpa~~iaYVEiG~~~   66 (74)
T pfam11305        17 ESAQSPEEVEALVAEALADGS----------GVLSLTDDKGRRVLVPAAALAYVEIGAEE   66 (74)
T ss_pred             ECCCCHHHHHHHHHHHHHCCC----------CEEEEEECCCCEEEEECCCEEEEEECCCC
T ss_conf             658999999999999984899----------76998938998999985528999976898


No 241
>pfam01268 FTHFS Formate--tetrahydrofolate ligase.
Probab=43.51  E-value=12  Score=17.66  Aligned_cols=39  Identities=8%  Similarity=0.159  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHCCC-CCHH-HHHHHHHHHCCCCEEEHHEEE
Q ss_conf             99999997997689-8989-999999873047757641312
Q gi|254780426|r   56 GIRLPRIDASLEGI-FSET-EKEIFNNILRFRKIRIDDIMI   94 (320)
Q Consensus        56 el~~l~~~~~~~G~-i~~~-E~~ii~~vl~l~~~~v~diMt   94 (320)
                      -+.++++..-.+|- ++-+ .+-..+++++++|+..|+|-+
T Consensus       139 LlaA~iDNhi~~gn~L~IDp~~I~w~Rv~DmNDR~LR~I~i  179 (555)
T pfam01268       139 LLAAAIDNHIYHGNELDIDPRRITWKRVLDMNDRALRNIVV  179 (555)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHEEE
T ss_conf             99999988885167678484413366642010344213023


No 242
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=40.80  E-value=20  Score=16.03  Aligned_cols=64  Identities=22%  Similarity=0.278  Sum_probs=45.1

Q ss_pred             CHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCCH
Q ss_conf             5123234320135651165407766204667588999987422210000000012467733783045359
Q gi|254780426|r  179 LVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDL  248 (320)
Q Consensus       179 ~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~l  248 (320)
                      .+..++..+++...++.+|-+|-|-  |+|-...+-.    .+.|.--.-++.+....|..|+|-..+|+
T Consensus       104 ~~~~ll~~l~~~~~~~ViVsnEVG~--Givp~~~~~R----~frd~lG~lNq~lA~~Ad~V~lvvaGip~  167 (170)
T PRK05800        104 EIEALLAALQRLPAKIILVSNEVGM--GIVPEYRLGR----RFRDIAGRLNQQLAAAADEVYLVVAGLPL  167 (170)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCC--CCCCCCHHHH----HHHHHHHHHHHHHHHHCCEEEEEECCCCE
T ss_conf             9999999998279978999778677--7889987999----99999999999999877988999578656


No 243
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.    Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=40.13  E-value=26  Score=15.39  Aligned_cols=31  Identities=10%  Similarity=0.159  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf             9999999979976898989999999873047
Q gi|254780426|r   55 KGIRLPRIDASLEGIFSETEKEIFNNILRFR   85 (320)
Q Consensus        55 eel~~l~~~~~~~G~i~~~E~~ii~~vl~l~   85 (320)
                      |=+++|-.|.+.-.-|+.+-.+.+++.|.+.
T Consensus       345 ETIKsL~sE~~~y~KId~~F~~yL~K~f~y~  375 (710)
T TIGR01193       345 ETIKSLTSEAERYKKIDSEFEDYLNKSFKYQ  375 (710)
T ss_pred             CEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             0010052366777666788888888887778


No 244
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=39.18  E-value=20  Score=16.16  Aligned_cols=72  Identities=13%  Similarity=0.046  Sum_probs=44.1

Q ss_pred             CCCCHHHHHHHHHHHHHCCC-C-------------CHHHHHHHHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHH
Q ss_conf             88899999999997997689-8-------------989999999873047757641312001299986301036778979
Q gi|254780426|r   50 KLSHHKGIRLPRIDASLEGI-F-------------SETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMF  115 (320)
Q Consensus        50 ~~~~~eel~~l~~~~~~~G~-i-------------~~~E~~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i  115 (320)
                      ...+++|+..++..+.+.|. +             .+.. .+   ++++..+.--.---|-...+.+.+..++.++.+.+
T Consensus        37 ~p~s~~ev~~iv~~a~~~~~~v~prG~gt~~~g~~~~~~-gv---vl~l~~mn~i~~iD~~~~~~~v~aGv~l~~l~~~l  112 (459)
T COG0277          37 FPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPDG-GV---VLDLSRLNRILEIDPEDGTATVQAGVTLEDLEKAL  112 (459)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC-EE---EEECHHCCCCEEECCCCCEEEECCCCCHHHHHHHH
T ss_conf             789999999999999975990899789977767735786-49---99863306865446889989985896889999999


Q ss_pred             HHCCCCEEEEE
Q ss_conf             86598179984
Q gi|254780426|r  116 EKYGRSWMPVY  126 (320)
Q Consensus       116 ~~~~~sR~PV~  126 (320)
                      ..+|+. +|+.
T Consensus       113 ~~~Gl~-~p~~  122 (459)
T COG0277         113 APHGLF-LPVD  122 (459)
T ss_pred             HHCCCC-CCCC
T ss_conf             976982-4888


No 245
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=38.69  E-value=12  Score=17.52  Aligned_cols=18  Identities=17%  Similarity=0.194  Sum_probs=12.1

Q ss_pred             CCCCCCCCEEHHHHHHHH
Q ss_conf             866422410299999876
Q gi|254780426|r  129 SLDNPRGMVHMRDVISYI  146 (320)
Q Consensus       129 ~~d~iiGiv~~kDll~~~  146 (320)
                      ..|-++.+|.++.+....
T Consensus       116 ~ld~vvtvVDa~~~~~~~  133 (323)
T COG0523         116 RLDGVVTVVDAAHFLEGL  133 (323)
T ss_pred             EECCEEEEEEHHHHHHHH
T ss_conf             413369998478865456


No 246
>pfam05198 IF3_N Translation initiation factor IF-3, N-terminal domain.
Probab=38.10  E-value=28  Score=15.09  Aligned_cols=24  Identities=33%  Similarity=0.479  Sum_probs=19.1

Q ss_pred             CCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             511654077662046675889999
Q gi|254780426|r  193 RMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       193 ~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      .-..|+|+.|.-.|+++.++-++.
T Consensus        13 ~~VrlI~~~G~~lGv~~~~eAl~~   36 (76)
T pfam05198        13 REVRLIDEDGEQLGVVSRAEALRL   36 (76)
T ss_pred             CEEEEECCCCCEECCEEHHHHHHH
T ss_conf             999998899929661769999999


No 247
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=35.57  E-value=24  Score=15.57  Aligned_cols=38  Identities=11%  Similarity=0.137  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHCCC---CCHHHHHHHHHHHCCCCEEEHHEEE
Q ss_conf             99999997997689---8989999999873047757641312
Q gi|254780426|r   56 GIRLPRIDASLEGI---FSETEKEIFNNILRFRKIRIDDIMI   94 (320)
Q Consensus        56 el~~l~~~~~~~G~---i~~~E~~ii~~vl~l~~~~v~diMt   94 (320)
                      -+.++++..-.+|.   |++ .+-..+++++++|+..|+|.+
T Consensus       123 LlaA~iDn~i~~gn~l~IDp-~~I~w~Rv~DmNDR~LR~I~v  163 (524)
T cd00477         123 LLAAAIDNHIHHGNRLDIDP-RRITWKRVLDVNDRALRKIVI  163 (524)
T ss_pred             HHHHHHHHHHHCCCCCCCCC-CEEEEEEECCCCHHHHHHEEE
T ss_conf             99999999886355448887-757998753561333312365


No 248
>cd07178 terB_like_YebE tellurium resistance terB-like protein, subgroup 3. This family includes several uncharacterized bacterial proteins including an Escherichia coli protein called YebE. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=35.51  E-value=31  Score=14.83  Aligned_cols=28  Identities=21%  Similarity=0.159  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf             9999997997689898999999987304
Q gi|254780426|r   57 IRLPRIDASLEGIFSETEKEIFNNILRF   84 (320)
Q Consensus        57 l~~l~~~~~~~G~i~~~E~~ii~~vl~l   84 (320)
                      |+.++..+...|.|+..|+..|.+-+.=
T Consensus         3 lrAMIaAAkADG~ID~~Er~~I~~~l~~   30 (95)
T cd07178           3 LRAMIAAAKADGHIDEAERARILGELGE   30 (95)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             9999999871699699999999999987


No 249
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=35.39  E-value=27  Score=15.20  Aligned_cols=35  Identities=14%  Similarity=0.221  Sum_probs=22.3

Q ss_pred             HHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             32343201356511654077662046675889999
Q gi|254780426|r  182 DLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       182 ~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
                      -+|..|.--..|..+|..||-.-.-.+|+.|..-+
T Consensus        96 ~llNKF~VVdeHlLiVTrefedQ~s~LTl~Df~ta  130 (298)
T COG4360          96 LLLNKFPVVDEHLLIVTREFEDQESALTLADFTTA  130 (298)
T ss_pred             HHHHCCCCCCCEEEEEEHHHHHCCCCCCHHHHHHH
T ss_conf             56516876664357864032201265788899999


No 250
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=35.25  E-value=27  Score=15.29  Aligned_cols=37  Identities=11%  Similarity=0.234  Sum_probs=32.6

Q ss_pred             CCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHH
Q ss_conf             8512323432013565116540776620466758899
Q gi|254780426|r  178 MLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIV  214 (320)
Q Consensus       178 ~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIl  214 (320)
                      ..+.++|..+++.+..+++|-+.-|---|..|.+|+-
T Consensus        32 ~g~~~al~~l~~~g~~~~ivTNQsGI~rG~~t~~~~~   68 (181)
T PRK08942         32 PGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLN   68 (181)
T ss_pred             CCHHHHHHHHHHCCCEEEEEECCHHHCCCCCCHHHHH
T ss_conf             7889999999987996999958713425867799999


No 251
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=35.10  E-value=17  Score=16.54  Aligned_cols=19  Identities=5%  Similarity=0.231  Sum_probs=14.9

Q ss_pred             HHHHHHHCCCCEEEHHEEE
Q ss_conf             9999873047757641312
Q gi|254780426|r   76 EIFNNILRFRKIRIDDIMI   94 (320)
Q Consensus        76 ~ii~~vl~l~~~~v~diMt   94 (320)
                      -..+++++++|+..|+|.+
T Consensus       175 I~w~Rv~DmNDR~LR~I~v  193 (577)
T PRK13506        175 ILWKRVVDHNDRALRMITV  193 (577)
T ss_pred             EEEEEEEECCCHHCCEEEE
T ss_conf             6777777653510030356


No 252
>pfam02283 CobU Cobinamide kinase / cobinamide phosphate guanyltransferase. This family is composed of a group of bifunctional cobalamin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape.
Probab=34.39  E-value=32  Score=14.71  Aligned_cols=64  Identities=22%  Similarity=0.283  Sum_probs=45.1

Q ss_pred             CHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCCH
Q ss_conf             5123234320135651165407766204667588999987422210000000012467733783045359
Q gi|254780426|r  179 LVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDL  248 (320)
Q Consensus       179 ~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~l  248 (320)
                      .+.+++..+++...++.+|-+|-|-  |+|-..-+-.    .+.|.--.-++.+...+|..|+|-..+|+
T Consensus       101 ~~~~ll~~l~~~~~~~ViVsnEvG~--Givp~~~~~R----~f~d~lG~lNq~lA~~ad~V~lvvaGipl  164 (166)
T pfam02283       101 EVDELLAALKARPAPVVLVSNEVGL--GIVPENALGR----RFRDLLGRLNQRLAAAADEVYLVVAGLPL  164 (166)
T ss_pred             HHHHHHHHHHCCCCCEEEEECCCCC--CCCCCCHHHH----HHHHHHHHHHHHHHHHCCEEEEEECCCCE
T ss_conf             9999999997489979999767678--8758987899----99999999999999878988999568444


No 253
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH; InterPro: IPR011909   Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system .    Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond.   Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed  that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro.    NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterised by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase .; GO: 0006118 electron transport, 0045454 cell redox homeostasis.
Probab=32.65  E-value=29  Score=15.04  Aligned_cols=37  Identities=16%  Similarity=0.157  Sum_probs=27.3

Q ss_pred             EEEEEECCCHHHHHHHHHHCCCCEEEEECC-CCCCCCCC
Q ss_conf             999863010367789798659817998418-86642241
Q gi|254780426|r   99 INAVEDKATVYEAMLMFEKYGRSWMPVYKN-SLDNPRGM  136 (320)
Q Consensus        99 i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~-~~d~iiGi  136 (320)
                      -..+|.+.. .|+++.+++-||.-.||... +.+.+.|+
T Consensus        26 Fe~inid~~-pea~d~vk~lGF~~~PVi~~~g~~~~SGF   63 (72)
T TIGR02194        26 FEEINIDEQ-PEAVDYVKALGFRQVPVIVAEGDESWSGF   63 (72)
T ss_pred             EEEEECCCC-HHHHHHHHHCCCEECCEEEECCCEEEECC
T ss_conf             157635888-43789998748630762676797002133


No 254
>pfam04278 Tic22 Tic22-like family. The preprotein translocation at the inner envelope membrane of chloroplasts so far involves five proteins: Tic110, Tic55, Tic40, Tic22 (this family) and Tic20. The molecular function of these proteins has not yet been established.
Probab=31.03  E-value=37  Score=14.36  Aligned_cols=91  Identities=20%  Similarity=0.282  Sum_probs=59.7

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCC-----CCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf             12999863010367789798659-----8179984188664224102999998766223564322333457678851565
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYG-----RSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNI  171 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~-----~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r~~  171 (320)
                      -...+++....++-|++.+.+.|     |.-.||+-.....  |++.++.                .+.        +-+
T Consensus       137 l~f~fvP~~~qv~~A~~ll~~~gq~~~~F~GVPlF~~~~g~--~~Lti~~----------------~n~--------~~i  190 (259)
T pfam04278       137 VAFRFVPDPKQVKNALELLKKNGQNVDGFRGVPVFQSRSGE--GYLTIQK----------------DNK--------QYI  190 (259)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCC--CEEEEEC----------------CCC--------EEE
T ss_conf             06996389899999999999709877789885568873886--2488952----------------991--------797


Q ss_pred             EEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHH
Q ss_conf             79717885123234320135651165407766204667588999987
Q gi|254780426|r  172 LFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLM  218 (320)
Q Consensus       172 ~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~iv  218 (320)
                      ++.-+...+...|+++++.+-.++.=+.     +=+++||+|++.+-
T Consensus       191 P~FF~Kedlq~~l~~~k~qqp~l~~~~~-----I~V~~Le~vi~~m~  232 (259)
T pfam04278       191 PVFFSKEDLQRMLDRAKRQQPDLAVSVK-----IEVGSLEDVLKKML  232 (259)
T ss_pred             EEEEEHHHHHHHHHHHHHHCCCCCCCCE-----EEEEEHHHHHHHHH
T ss_conf             5686379999999997775757678854-----99974999999986


No 255
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=29.52  E-value=39  Score=14.19  Aligned_cols=33  Identities=15%  Similarity=0.195  Sum_probs=18.5

Q ss_pred             CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEE
Q ss_conf             103677897986598179984188664224102
Q gi|254780426|r  106 ATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVH  138 (320)
Q Consensus       106 ~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~  138 (320)
                      .+..+|++...+.+..-+-|-.+..=-|.-++.
T Consensus        33 ~~~~eAl~~A~~~~LDLV~vs~~~~PPVcKi~d   65 (175)
T PRK00028         33 VSIREALRLAEEAGLDLVEISPNAKPPVCKIMD   65 (175)
T ss_pred             EEHHHHHHHHHHCCCCEEEECCCCCCCEEEEEH
T ss_conf             649999999998199489987899998689850


No 256
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=29.37  E-value=39  Score=14.18  Aligned_cols=15  Identities=20%  Similarity=0.337  Sum_probs=7.3

Q ss_pred             CCCHHHHHHHHCCCC
Q ss_conf             535999999828888
Q gi|254780426|r  245 RTDLEELAKIIGTDC  259 (320)
Q Consensus       245 ~~~l~~l~~~l~~~l  259 (320)
                      .|....+.-.||=.+
T Consensus       166 kM~~~NLAivfgP~L  180 (211)
T cd04409         166 KMSASNLGIIFGPTL  180 (211)
T ss_pred             CCCHHHHHHHHHHHC
T ss_conf             798899999972140


No 257
>pfam04391 DUF533 Protein of unknown function (DUF533). Some family members may be secreted or integral membrane proteins.
Probab=29.34  E-value=39  Score=14.17  Aligned_cols=30  Identities=20%  Similarity=0.115  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf             999999997997689898999999987304
Q gi|254780426|r   55 KGIRLPRIDASLEGIFSETEKEIFNNILRF   84 (320)
Q Consensus        55 eel~~l~~~~~~~G~i~~~E~~ii~~vl~l   84 (320)
                      -=|+.++..+...|.|+.+|+..|...+.=
T Consensus        80 ~llrAMIaAAkADG~ID~~Er~~I~~~l~~  109 (187)
T pfam04391        80 LLLRAMIAAAKADGHIDEEERARIEQELGE  109 (187)
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             999999999985599599999999999987


No 258
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=28.26  E-value=41  Score=14.05  Aligned_cols=64  Identities=20%  Similarity=0.285  Sum_probs=44.8

Q ss_pred             CHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCCH
Q ss_conf             5123234320135651165407766204667588999987422210000000012467733783045359
Q gi|254780426|r  179 LVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDL  248 (320)
Q Consensus       179 ~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~l  248 (320)
                      .+..++..+++...++.+|-+|-|-  |+|-..-+-..    +.|.--.-++.+.+..|..|++-..+|+
T Consensus       104 ~i~~l~~~l~~~~~~~ViVSnEVG~--givp~~~~~R~----f~d~lG~lNQ~iA~~ad~V~lvvaGipl  167 (169)
T cd00544         104 EIDALLAAVRNKPGTLILVSNEVGL--GVVPENALGRR----FRDELGRLNQRLAALADEVYLVVSGIPL  167 (169)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCC--CCCCCCHHHHH----HHHHHHHHHHHHHHHCCEEEEEECCCCE
T ss_conf             9999999997089979999658778--98899889999----9999999999999976988999568455


No 259
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain; InterPro: IPR012822    This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (IPR012821 from INTERPRO), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant sucrose phosphate synthase (SPS). At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase..
Probab=26.25  E-value=12  Score=17.52  Aligned_cols=59  Identities=12%  Similarity=0.119  Sum_probs=28.3

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECC
Q ss_conf             8889999999999799768989899999998730477576413120012999863010367789798659817998418
Q gi|254780426|r   50 KLSHHKGIRLPRIDASLEGIFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKN  128 (320)
Q Consensus        50 ~~~~~eel~~l~~~~~~~G~i~~~E~~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~  128 (320)
                      ....+++|...-..|.+   |+++|..+-.                 ..++..+..+-+++=......+.=.|.=|.-.
T Consensus       164 aPkP~~~IE~~f~is~R---I~AEE~tL~~-----------------AslvitST~QEi~~QY~~Y~~y~P~r~~VIPP  222 (445)
T TIGR02472       164 APKPPQEIEKQFNISRR---IEAEEETLAH-----------------ASLVITSTHQEIEEQYALYDSYDPERMEVIPP  222 (445)
T ss_pred             CCCCHHHHHHHHCCCCC---HHHHHHHHHH-----------------CCEEEEECCCEEHHHHCCCCCCCCCCCEECCC
T ss_conf             78877899986122641---4788999851-----------------47458614510321210147867021135178


No 260
>pfam01565 FAD_binding_4 FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyses the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidizes the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan.
Probab=25.58  E-value=44  Score=13.82  Aligned_cols=69  Identities=20%  Similarity=0.174  Sum_probs=40.8

Q ss_pred             CCEEEEECCCCHHHHHHHH---CCCCCCCCCCCCCCCHHHHHHHHHCC-C-CCCCCEEEEECCEEEEEEEECCCEE
Q ss_conf             7337830453599999982---88888777746743179999998423-4-7379889975895999999518878
Q gi|254780426|r  237 DNTFIVDARTDLEELAKII---GTDCNCLKGEQDVDSLGGLIFSVLDR-I-PARGEVVLEIPGFEIVILDADVRCV  307 (320)
Q Consensus       237 ~g~~~v~G~~~l~~l~~~l---~~~l~~~~~~~~~~Ti~G~i~~~l~~-i-P~~Ge~v~~~~g~~f~V~~~~~~rI  307 (320)
                      +....+.+.+++.++.+.+   |+-++..+.....-|+||++..--.- . ...|-.. + .=..++|+..||.-+
T Consensus        62 ~~~v~v~aG~~~~~l~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~G~~~~~~G~~~-d-~v~~~~vV~~~G~iv  135 (138)
T pfam01565        62 NGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSEKYGLTR-D-NVLSLEVVLADGEVV  135 (138)
T ss_pred             CCEEEEECCCCHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCHH-H-EEEEEEEECCCCCEE
T ss_conf             8489995780999999999972998863167667620312124896556745646488-7-489999996897199


No 261
>pfam02743 Cache_1 Cache domain.
Probab=25.58  E-value=40  Score=14.13  Aligned_cols=25  Identities=16%  Similarity=0.396  Sum_probs=11.7

Q ss_pred             HHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf             1232343201356511654077662
Q gi|254780426|r  180 VSDLLTNIQESRIRMALVIDEHGGT  204 (320)
Q Consensus       180 l~~lL~~m~~~~~~~aiVvDE~G~~  204 (320)
                      +.+.+..++-.+...++++|+.|.+
T Consensus        41 l~~~v~~~~~g~~Gy~flvd~~G~i   65 (81)
T pfam02743        41 LLKITKSIKLGKTGYAFIVDNNGKV   65 (81)
T ss_pred             HHHHHHHCCCCCCEEEEEECCCCCE
T ss_conf             9988874502896099999399999


No 262
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=24.77  E-value=47  Score=13.65  Aligned_cols=31  Identities=19%  Similarity=0.292  Sum_probs=25.1

Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             6579717885123234320135651165407
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDE  200 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE  200 (320)
                      .+.-+++..++.++|..+......+|+.++.
T Consensus         8 e~~e~~~~~tl~~Ll~~l~~~~~giAvAiN~   38 (66)
T PRK08053          8 QPMQCAAGQTVHELLEQLNQLQPGAALAINQ   38 (66)
T ss_pred             EEEECCCCCCHHHHHHHHCCCCCCEEEEECC
T ss_conf             8878689985999998727888858999889


No 263
>pfam09269 DUF1967 Domain of unknown function (DUF1967). Members of this family contain a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. They are predominantly found in the bacterial GTP-binding protein Obg, and are still functionally uncharacterized.
Probab=24.50  E-value=48  Score=13.61  Aligned_cols=56  Identities=29%  Similarity=0.392  Sum_probs=33.5

Q ss_pred             CCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCC----------CCCCCCEEEEECCEEEE
Q ss_conf             12467733783045359999998288888777746743179999998423----------47379889975895999
Q gi|254780426|r  232 ISAVSDNTFIVDARTDLEELAKIIGTDCNCLKGEQDVDSLGGLIFSVLDR----------IPARGEVVLEIPGFEIV  298 (320)
Q Consensus       232 i~~~~~g~~~v~G~~~l~~l~~~l~~~l~~~~~~~~~~Ti~G~i~~~l~~----------iP~~Ge~v~~~~g~~f~  298 (320)
                      +.+.++|.|.|.|.-. +.+-...+++-        .+.+. ++...|.+          =-+.||+| .+++++|+
T Consensus         2 I~~~~~g~f~V~G~~i-er~~~~t~~~~--------~ea~~-~f~~~L~~~Gv~~~L~~~G~k~GD~V-~Ig~~eFe   67 (68)
T pfam09269         2 IEREGDGVFVVEGPKI-ERLVKMTNFDN--------DESLR-RFARILKKLGVEDALRKAGAKDGDTV-RIGDFEFE   67 (68)
T ss_pred             EEEECCCEEEEECHHH-HHHHHHCCCCC--------HHHHH-HHHHHHHHCCHHHHHHHCCCCCCCEE-EEEEEEEE
T ss_conf             7990795599977389-99998778998--------99999-99999998897899997699997999-99127996


No 264
>cd00517 ATPS ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS).  This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS).  In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions.  In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies.  In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate.  ATP sulfurylase can be a monomer, a hom
Probab=24.45  E-value=48  Score=13.61  Aligned_cols=10  Identities=30%  Similarity=0.328  Sum_probs=3.2

Q ss_pred             HHHHHHHHCC
Q ss_conf             7789798659
Q gi|254780426|r  110 EAMLMFEKYG  119 (320)
Q Consensus       110 e~~~~i~~~~  119 (320)
                      +..+.+.+.|
T Consensus       146 e~r~~~~~~g  155 (356)
T cd00517         146 ELREEFKEKG  155 (356)
T ss_pred             HHHHHHHHCC
T ss_conf             9999998568


No 265
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=24.43  E-value=31  Score=14.83  Aligned_cols=12  Identities=17%  Similarity=0.163  Sum_probs=5.0

Q ss_pred             CCCCCCEEHHHH
Q ss_conf             642241029999
Q gi|254780426|r  131 DNPRGMVHMRDV  142 (320)
Q Consensus       131 d~iiGiv~~kDl  142 (320)
                      |.++.+|.+...
T Consensus       124 d~vVtvVDa~~~  135 (317)
T PRK11537        124 DGVIALVDAVHA  135 (317)
T ss_pred             CCEEEEEEHHHH
T ss_conf             655999866555


No 266
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=24.37  E-value=48  Score=13.60  Aligned_cols=68  Identities=13%  Similarity=0.150  Sum_probs=47.6

Q ss_pred             HHHHCCCCCCCCHHH----HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHH
Q ss_conf             876337888889999----999999799768989899999998730477576413120012999863010367789
Q gi|254780426|r   42 LCKTWKLMKLSHHKG----IRLPRIDASLEGIFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAML  113 (320)
Q Consensus        42 ~~~~~~~~~~~~~ee----l~~l~~~~~~~G~i~~~E~~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~  113 (320)
                      .-..||+....+.++    ++.++.-+...|+++++|++.+.+...--..+..-+|.-...    +.+.++.+...
T Consensus         8 f~~~~gf~~~p~~e~~~~Y~kall~~A~~Dg~~~~~E~~~~~g~~~a~g~~~d~veel~~~----~~De~l~~~~~   79 (150)
T cd07311           8 FQQTWGFDQIPTNQDKLAYLKALLVCAKGDGVISPEERDWAIGYAAARGGDADMVEELKEY----TADEDLEEVDF   79 (150)
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHC----CCCHHHHHHHH
T ss_conf             8886076668854789999999998742566668899999999999949999999998734----54111999984


No 267
>TIGR02886 spore_II_AA anti-sigma F factor antagonist; InterPro: IPR014237   This represents the anti-sigma F factor antagonist, also known as stage II sporulation protein AA. This protein is universally conserved in the endospore-forming bacteria, all of which belong to the Firmcutes.; GO: 0045152 antisigma factor binding, 0006355 regulation of transcription DNA-dependent, 0030435 sporulation.
Probab=24.00  E-value=49  Score=13.55  Aligned_cols=39  Identities=8%  Similarity=0.225  Sum_probs=30.6

Q ss_pred             CCCCCHHHHHHHHHHHC--CCCEEEHHEEECCCEEEEEEEC
Q ss_conf             68989899999998730--4775764131200129998630
Q gi|254780426|r   67 EGIFSETEKEIFNNILR--FRKIRIDDIMISRVSINAVEDK  105 (320)
Q Consensus        67 ~G~i~~~E~~ii~~vl~--l~~~~v~diMtPr~~i~~i~~~  105 (320)
                      .|.||+++++.+.+..+  +....++++-.=..++.++|++
T Consensus        15 ~GELDHH~aE~~R~~i~~~i~~~~~~~~ilnL~~vtFMDSS   55 (106)
T TIGR02886        15 SGELDHHTAEEVRRKIDDAIERRPIKHLILNLKNVTFMDSS   55 (106)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEC
T ss_conf             61004467899999999898507983689862776478651


No 268
>PRK10329 glutaredoxin-like protein; Provisional
Probab=22.27  E-value=53  Score=13.33  Aligned_cols=37  Identities=16%  Similarity=0.067  Sum_probs=25.0

Q ss_pred             EEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCC
Q ss_conf             99986301036778979865981799841886642241
Q gi|254780426|r   99 INAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGM  136 (320)
Q Consensus        99 i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGi  136 (320)
                      ...+|.+.. .++++.+...||...||...+.+...|+
T Consensus        28 y~~vdi~~d-pea~~~vk~~G~~q~PVV~~~~~~wsGF   64 (81)
T PRK10329         28 FEMINVDRV-PEAADTLRAQGFRQLPVVIAGDLSWSGF   64 (81)
T ss_pred             EEEEECCCC-HHHHHHHHHCCCCCCCEEEECCCEECCC
T ss_conf             299858999-9999999976985599899699544360


No 269
>PRK06193 hypothetical protein; Provisional
Probab=21.80  E-value=54  Score=13.27  Aligned_cols=55  Identities=20%  Similarity=0.080  Sum_probs=40.7

Q ss_pred             EECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCCHHHHHH
Q ss_conf             40776620466758899998742221000000001246773378304535999999
Q gi|254780426|r  198 IDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDLEELAK  253 (320)
Q Consensus       198 vDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~l~~l~~  253 (320)
                      ...-|.-.=+||..+.++++.|-..+. ..+.--+.+.+.|.|.+=|+++.+++.+
T Consensus       156 ~p~~G~N~VlVtHqvni~alTGi~P~~-eG~~vV~~P~g~g~f~vlg~i~P~~W~~  210 (211)
T PRK06193        156 PPAPGTNTVLVGHDDNFEAATGIYPVP-EGIAYVFEPDGGQPFKPLARIPPEEWAK  210 (211)
T ss_pred             CCCCCCEEEEEECCCCHHHHHCCCCCC-CCEEEEEEECCCCCCEEEEECCHHHHHH
T ss_conf             898997489996875187772877788-8729999547999924887548888532


No 270
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.55  E-value=54  Score=13.24  Aligned_cols=30  Identities=20%  Similarity=0.139  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf             999999979976898989999999873047
Q gi|254780426|r   56 GIRLPRIDASLEGIFSETEKEIFNNILRFR   85 (320)
Q Consensus        56 el~~l~~~~~~~G~i~~~E~~ii~~vl~l~   85 (320)
                      =|++|+..+...|.|++.|+.+|..-++.+
T Consensus       113 ll~AmIaAAkaDGhIDe~ERa~I~~~l~~s  142 (225)
T COG2979         113 LLRAMIAAAKADGHIDEKERARIMQKLQES  142 (225)
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf             999999998624776799999999999871


No 271
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=21.33  E-value=40  Score=14.14  Aligned_cols=25  Identities=24%  Similarity=0.482  Sum_probs=13.5

Q ss_pred             CCHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf             851232343201356511654077662
Q gi|254780426|r  178 MLVSDLLTNIQESRIRMALVIDEHGGT  204 (320)
Q Consensus       178 ~~l~~lL~~m~~~~~~~aiVvDE~G~~  204 (320)
                      +-+..+|+.  ....+.|++++|+|.+
T Consensus        15 Tll~~lL~~--~~~~~~avIvNEfG~~   39 (158)
T cd03112          15 TLLNHILTE--QHGRKIAVIENEFGEV   39 (158)
T ss_pred             HHHHHHHHC--CCCCCEEEEEECCCCC
T ss_conf             999999847--8899779997076554


No 272
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain.  DCR in E. coli  is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=21.25  E-value=55  Score=13.20  Aligned_cols=17  Identities=29%  Similarity=0.122  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHCCCC
Q ss_conf             99999999979976898
Q gi|254780426|r   54 HKGIRLPRIDASLEGIF   70 (320)
Q Consensus        54 ~eel~~l~~~~~~~G~i   70 (320)
                      -+.++.+++.-+++|..
T Consensus        76 i~~~k~l~~~vH~~G~~   92 (353)
T cd02930          76 AAGHRLITDAVHAEGGK   92 (353)
T ss_pred             HHHHHHHHHHHHHCCCE
T ss_conf             99999999999976997


No 273
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases; InterPro: IPR004507   This family contains flavoproteins, which are aromatic acid decarboxylases. An example is the Saccharomyces cerevisiae gene, PAD1 that encodes phenylacrylic acid decarboxylase. Mutations of this gene are viable and confer resistance to cinnamic acid. ; GO: 0016831 carboxy-lyase activity.
Probab=21.13  E-value=56  Score=13.19  Aligned_cols=62  Identities=13%  Similarity=0.235  Sum_probs=31.5

Q ss_pred             CCCEEECCCCCHHH-----HHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCC
Q ss_conf             56579717885123-----234320135651165407766204667588999987422210000000012
Q gi|254780426|r  169 KNILFVPSSMLVSD-----LLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMIS  233 (320)
Q Consensus       169 r~~~~Vpe~~~l~~-----lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~  233 (320)
                      |+.+.+|--+|+..     +|+.-+..-+=|=.|--=|-...   +++|++|.+||-+-|-+-.+.+.++
T Consensus       113 RkLvL~~REtPL~SiHLENmL~L~~~G~IIlPP~PaFY~rPk---S~~Dl~~~~VgR~LD~lGI~~d~f~  179 (181)
T TIGR00421       113 RKLVLVPRETPLNSIHLENMLRLSRMGAIILPPVPAFYNRPK---SVEDLIDFIVGRVLDQLGIENDLFR  179 (181)
T ss_pred             CCEEEECCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCC---CHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             424640367887515489999998279253279554447898---8788986779877776244378888


No 274
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=20.93  E-value=44  Score=13.86  Aligned_cols=45  Identities=13%  Similarity=0.191  Sum_probs=25.1

Q ss_pred             CCCEEECCCCCHHH-HH-H-HHHCCCCCC-EEEEECCCCCEEEEEHHHH
Q ss_conf             56579717885123-23-4-320135651-1654077662046675889
Q gi|254780426|r  169 KNILFVPSSMLVSD-LL-T-NIQESRIRM-ALVIDEHGGTDGLVSYEDI  213 (320)
Q Consensus       169 r~~~~Vpe~~~l~~-lL-~-~m~~~~~~~-aiVvDE~G~~~GiVTleDI  213 (320)
                      |.|.|-++...-.- .. + .-+..--|. .++.|+.|.++|.||+.++
T Consensus       110 r~P~~~~~~~~rfY~~Wie~aV~G~fD~~cLv~~~~~g~i~GFvtlr~l  158 (231)
T PRK10975        110 RAPWYAPDASGRFYAQWIENAVRGTFDHQCLILRDATGQIRGFVSLREL  158 (231)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEEEEC
T ss_conf             7987797898789999999984666585689998689977899999852


No 275
>KOG2916 consensus
Probab=20.84  E-value=31  Score=14.82  Aligned_cols=102  Identities=17%  Similarity=0.183  Sum_probs=53.9

Q ss_pred             EEEECCCHHHHHHHHHHCCCCEEEE-ECCCCC----CCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCEEEC
Q ss_conf             9863010367789798659817998-418866----42241029999987662235643223334576788515657971
Q gi|254780426|r  101 AVEDKATVYEAMLMFEKYGRSWMPV-YKNSLD----NPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVP  175 (320)
Q Consensus       101 ~i~~~~~~~e~~~~i~~~~~sR~PV-~~~~~d----~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r~~~~Vp  175 (320)
                      .++.+..+.+.+..-.+.+++-=|| .+.+.+    .--||.++|..+..-.+.....-++      .+ .++.||+||-
T Consensus       157 ~l~~~~~vk~~Llk~Irrrltpq~vKIRADIEv~Cf~yeGI~aIK~alk~a~~~~te~~pi------ki-~LIApPlYVl  229 (304)
T KOG2916         157 ELDLSEEVKEVLLKNIRRRLTPQTVKIRADIEVSCFGYEGIDAIKAALKAALNLSTEECPI------KI-KLIAPPLYVL  229 (304)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCE------EE-EEECCCEEEE
T ss_conf             6677778999999999875488655787325898606567999999999887279665745------89-9855864899


Q ss_pred             CCCCHHH--HHHHHHCCCCCCEEEEECCCCCEEEEE
Q ss_conf             7885123--234320135651165407766204667
Q gi|254780426|r  176 SSMLVSD--LLTNIQESRIRMALVIDEHGGTDGLVS  209 (320)
Q Consensus       176 e~~~l~~--lL~~m~~~~~~~aiVvDE~G~~~GiVT  209 (320)
                      -+.++.+  .+..+...=.++-..+-+|||+--+..
T Consensus       230 TT~tldK~~g~e~l~~Ai~~i~~~I~~~~G~~~V~~  265 (304)
T KOG2916         230 TTQTLDKTKGLEVLEEAIEVIISKIEEYGGTFTVIM  265 (304)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf             886302011199999999999998875097799985


No 276
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=20.77  E-value=56  Score=13.14  Aligned_cols=56  Identities=21%  Similarity=0.281  Sum_probs=33.0

Q ss_pred             CCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCC----------CCCCCCEEEEECCEEEE
Q ss_conf             12467733783045359999998288888777746743179999998423----------47379889975895999
Q gi|254780426|r  232 ISAVSDNTFIVDARTDLEELAKIIGTDCNCLKGEQDVDSLGGLIFSVLDR----------IPARGEVVLEIPGFEIV  298 (320)
Q Consensus       232 i~~~~~g~~~v~G~~~l~~l~~~l~~~l~~~~~~~~~~Ti~G~i~~~l~~----------iP~~Ge~v~~~~g~~f~  298 (320)
                      |.+.++|.|.|.|.- ++.+-...+++-        .+.+. ++...|.+          =-+.||+| .+++++|+
T Consensus         3 I~r~~dg~~~V~G~~-ier~~~~t~~~~--------~ea~~-rf~~~Lk~~Gv~~~L~~~G~k~GD~V-~I~~~eFe   68 (69)
T TIGR03595         3 IIRDEDGVFVVSGKK-IERWVAKTPFNN--------DENLR-RFARKLKKLGVEDALRKAGAKDGDTV-RIGDFEFE   68 (69)
T ss_pred             EEECCCCEEEEECCH-HHHHHHHCCCCC--------HHHHH-HHHHHHHHCCHHHHHHHCCCCCCCEE-EECCEEEE
T ss_conf             999789769997728-999998669999--------99999-99999998897899998699999999-99348996


No 277
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=20.46  E-value=57  Score=13.09  Aligned_cols=35  Identities=20%  Similarity=0.102  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHH
Q ss_conf             367789798659817998418866422410299999
Q gi|254780426|r  108 VYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVI  143 (320)
Q Consensus       108 ~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll  143 (320)
                      +.++++.+.+.||.-+-|..-+. ==.|+...+|+-
T Consensus        35 v~~aLk~L~~~GY~liVVTNQsG-IgrG~~t~ed~~   69 (354)
T PRK05446         35 VIPALLKLQKAGYKLVMVTNQDG-LGTDSFPQEDFD   69 (354)
T ss_pred             HHHHHHHHHHCCCEEEEEECCCC-CCCCCCCHHHHH
T ss_conf             89999999987998999948851-147988999999


No 278
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=20.37  E-value=43  Score=13.90  Aligned_cols=15  Identities=13%  Similarity=0.492  Sum_probs=5.7

Q ss_pred             CCCHHHHHHHHHHHC
Q ss_conf             989899999998730
Q gi|254780426|r   69 IFSETEKEIFNNILR   83 (320)
Q Consensus        69 ~i~~~E~~ii~~vl~   83 (320)
                      -+.+--..+++++++
T Consensus         8 FLGsGKTTll~~ll~   22 (174)
T pfam02492         8 FLGSGKTTLLEHLLR   22 (174)
T ss_pred             CCCCCHHHHHHHHHH
T ss_conf             887889999999998


Done!