RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780426|ref|YP_003064839.1| hemolysin protein [Candidatus
Liberibacter asiaticus str. psy62]
(320 letters)
>gnl|CDD|31445 COG1253, TlyC, Hemolysins and related proteins containing CBS
domains [General function prediction only].
Length = 429
Score = 184 bits (469), Expect = 3e-47
Identities = 91/250 (36%), Positives = 141/250 (56%), Gaps = 14/250 (5%)
Query: 67 EGIFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVY 126
EG+ E E+E+ NN+L + +IM R I A++ TV E + + + G S +PVY
Sbjct: 186 EGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVY 245
Query: 127 KNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVPSSMLVSDLLTN 186
LDN G+VH++D++ + ++ L L++ LFVP ++ +SDLL
Sbjct: 246 DGDLDNIIGIVHVKDLLRAL---------LDGQSDLDLRVLVRPPLFVPETLSLSDLLEE 296
Query: 187 IQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSM-ISAVSDNTFIVDAR 245
+E R MA+V+DE+GG +GLV+ EDI+ ++ +I EH + I D+ ++VD R
Sbjct: 297 FREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDGWLVDGR 356
Query: 246 TDLEELAKIIGTDCNCLKGEQDVDSLGGLIFSVLDRIPARGEVVLEIPGFEIVILDADVR 305
LEEL +++G D L E+D D++ GL+ S+L RIP GE V I G +LD D R
Sbjct: 357 VPLEELEELLGID---LDEEEDYDTIAGLVLSLLGRIPKVGESV-VIGGLRFEVLDMDGR 412
Query: 306 CVRRVRIRRL 315
+ +V I RL
Sbjct: 413 RIDKVLIVRL 422
>gnl|CDD|34183 COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic
ion transport and metabolism].
Length = 423
Score = 124 bits (313), Expect = 3e-29
Identities = 66/252 (26%), Positives = 124/252 (49%), Gaps = 18/252 (7%)
Query: 67 EGIFSETEKEIFNNILRFRKIRIDDIMISR---VSINAVEDKATVYEAMLMFEKYGRSWM 123
EG ++ ++++ +L + + DIM+ R + I+ + + L+ + R +
Sbjct: 180 EGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQ-LLHSPHTR--I 236
Query: 124 PVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVPSSMLVSDL 183
P+Y++ LDN G++H+RD++ + K +I FVP +SD
Sbjct: 237 PLYRDDLDNIIGVLHVRDLLRL---LNEKNEFTKEDI----LRAADEPYFVPEGTPLSDQ 289
Query: 184 LTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVD 243
L Q ++ +ALV+DE+G GLV+ EDI+ ++ D T EH + + SD +FI+D
Sbjct: 290 LVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIPQSDGSFIID 349
Query: 244 ARTDLEELAKIIGTDCNCLKGEQDVDSLGGLIFSVLDRIPARGEVVLEIPGFEIVILDAD 303
++ +L + + + +D ++ GL+ L+ IP G+ V I G+ I IL
Sbjct: 350 GSANVRDLNRALDWNLPD----EDARTINGLVLEELEEIPEEGQAV-RIGGYRIDILKVQ 404
Query: 304 VRCVRRVRIRRL 315
+++V+I L
Sbjct: 405 ENRIKQVKITPL 416
>gnl|CDD|34182 COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic
ion transport and metabolism].
Length = 293
Score = 123 bits (310), Expect = 6e-29
Identities = 66/254 (25%), Positives = 126/254 (49%), Gaps = 15/254 (5%)
Query: 63 DASLEGIFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSW 122
D+ + ++ ++ +R+ DIMI R + ++ T+ E + + + S
Sbjct: 43 DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSR 102
Query: 123 MPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVPSSMLVSD 182
PV D+ G++ +D++ + M + ++ L++ + VP S V
Sbjct: 103 FPVISEDKDHVEGILLAKDLLPF---MRSDAEPFDI------KELLRPAVVVPESKRVDR 153
Query: 183 LLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSM-ISAVSDNTFI 241
LL + R MA+VIDE GG GLV+ EDI+ ++ DI E+ ++ I +S +T+
Sbjct: 154 LLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQLSRHTWR 213
Query: 242 VDARTDLEELAKIIGTDCNCLKGEQDVDSLGGLIFSVLDRIPARGEVVLEIPGFEIVILD 301
V A T++E+ + GT + +++VD++GGL+ +PARGE + +I G++ +
Sbjct: 214 VRALTEIEDFNEAFGTHFS----DEEVDTIGGLVMQAFGHLPARGEKI-DIGGYQFKVAR 268
Query: 302 ADVRCVRRVRIRRL 315
AD R V ++ +
Sbjct: 269 ADSRRVIQLHVTVP 282
>gnl|CDD|73090 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem
repeats of the cystathionine beta-synthase (CBS pair)
domains associated with the CorC_HlyC domain. CorC_HlyC
is a transporter associated domain. This small domain is
found in Na+/H+ antiporters, in proteins involved in
magnesium and cobalt efflux, and in association with
some proteins of unknown function. The function of the
CorC_HlyC domain is uncertain but it might be involved
in modulating transport of ion substrates. CBS is a
small domain originally identified in cystathionine
beta-synthase and subsequently found in a wide range of
different proteins. CBS domains usually come in tandem
repeats, which associate to form a so-called Bateman
domain or a CBS pair which is reflected in this model.
The interface between the two CBS domains forms a cleft
that is a potential ligand binding site. The CBS pair
coexists with a variety of other functional domains. It
has been proposed that the CBS domain may play a
regulatory role, although its exact function is unknown.
The second CBS domain in this CD is degenerate..
Length = 111
Score = 89.0 bits (221), Expect = 1e-18
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 9/116 (7%)
Query: 99 INAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINL 158
I A++ T+ E + + + G S PVY LDN G+VH++D++ ++
Sbjct: 3 IVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALA---------EG 53
Query: 159 NIQLSESNLIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIV 214
L +L++ LFVP S + DLL +++ R MA+V+DE+GGT GLV+ EDI+
Sbjct: 54 EEDLDLRDLLRPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDIL 109
>gnl|CDD|146225 pfam03471, CorC_HlyC, Transporter associated domain. This small
domain is found in a family of proteins with the
pfam01595 domain and two CBS domains with this domain
found at the C-terminus of the proteins, the domain is
also found at the C terminus of some Na+/H+ antiporters.
This domain is also found in CorC that is involved in
Magnesium and cobalt efflux. The function of this domain
is uncertain but might be involved in modulating
transport of ion substrates.
Length = 80
Score = 72.2 bits (178), Expect = 2e-13
Identities = 28/82 (34%), Positives = 52/82 (63%), Gaps = 5/82 (6%)
Query: 235 VSDNTFIVDARTDLEELAKIIGTDCNCLKGEQDVDSLGGLIFSVLDRIPARGE-VVLEIP 293
+ D +++VD R L++L +++G D L E+D D+L GL+ +L RIP G+ V +++
Sbjct: 3 LDDGSYLVDGRAPLDDLNELLGLD---LP-EEDYDTLAGLVLELLGRIPEVGDKVEVDLG 58
Query: 294 GFEIVILDADVRCVRRVRIRRL 315
G +L+ D R +++VR+ +L
Sbjct: 59 GLRFTVLEVDGRRIKKVRVTKL 80
>gnl|CDD|73081 cd02205, CBS_pair, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase)..
Length = 113
Score = 42.4 bits (99), Expect = 2e-04
Identities = 24/115 (20%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 102 VEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQ 161
V TV EA+ + ++G S +PV + G+V RD++ ++ ++
Sbjct: 6 VSPDDTVAEALRLMLEHGISGLPVV-DDDGRLVGIVTERDLLRALAEGGLDPLVTVGDV- 63
Query: 162 LSESNLIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV 216
+ ++++ V + + + E IR V+D+ G G+V+ DI+
Sbjct: 64 -----MTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILRA 113
Score = 37.8 bits (87), Expect = 0.004
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSK 228
++++ V V++ L + E I V+D+ G G+V+ D++ L +
Sbjct: 1 RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTV 60
Query: 229 KSMISAVSDNTFIVDARTDLEELAKII 255
+ ++ + V T LEE A+++
Sbjct: 61 GDV---MTRDVVTVSPDTSLEEAAELM 84
>gnl|CDD|144238 pfam00571, CBS, CBS domain. CBS domains are small intracellular
modules that pair together to form a stable globular
domain. This family represents a single CBS domain.
Pairs of these domains have been termed a Bateman
domain. CBS domains have been shown to bind ligands with
an adenosyl group such as AMP, ATP and S-AdoMet. CBS
domains are found attached to a wide range of other
protein domains suggesting that CBS domains may play a
regulatory role making proteins sensitive to adenosyl
carrying ligands. The region containing the CBS domains
in Cystathionine-beta synthase is involved in regulation
by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP.
The CBS domains from IMPDH and the chloride channel CLC2
bind ATP.
Length = 57
Score = 39.1 bits (92), Expect = 0.002
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 168 IKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMR 219
+++ VP + + L ++E+ I V+DE G G+V+ D++ L+
Sbjct: 6 TPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALLG 57
Score = 35.6 bits (83), Expect = 0.020
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 89 IDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISH 148
+ DIM V V ++ EA+ + + G S +PV G+V +RD++ +
Sbjct: 1 VKDIMTPDVVT--VPPDTSLEEALELMRENGISRLPVVDED-GKLVGIVTLRDLLRALLG 57
>gnl|CDD|73113 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem
repeats of the cystathionine beta-synthase (CBS pair)
domains in association with either the SpoIVFB domain
(sporulation protein, stage IV cell wall formation, F
locus, promoter-distal B) or the chloride channel
protein EriC. SpoIVFB is one of 4 proteins involved in
endospore formation; the others are SpoIVFA (sporulation
protein, stage IV cell wall formation, F locus,
promoter-proximal A), BofA (bypass-of-forespore A ), and
SpoIVB (sporulation protein, stage IV cell wall
formation, B locus). SpoIVFB is negatively regulated by
SpoIVFA and BofA and activated by SpoIVB. It is thought
that SpoIVFB, SpoIVFA, and BofA are located in the
mother-cell membrane that surrounds the forespore and
that SpoIVB is secreted from the forespore into the
space between the two where it activates SpoIVFB. EriC
is involved in inorganic ion transport and metabolism.
CBS is a small domain originally identified in
cystathionine beta-synthase and subsequently found in a
wide range of different proteins. CBS domains usually
come in tandem repeats, which associate to form a
so-called Bateman domain or a CBS pair which is
reflected in this model. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains. It has been proposed that the
CBS domain may play a regulatory role, although its
exact function is unknown..
Length = 114
Score = 37.8 bits (88), Expect = 0.004
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 63 DASLEGIFSETE-KEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRS 121
D L GI S + +EI + + + DIM + V + ++ +A+ FE
Sbjct: 33 DGRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVV--VYPEDSLEDALKKFEDSDYE 90
Query: 122 WMPVYKNSLDNPRGMVHMRDVISY 145
+PV + G++ D++S
Sbjct: 91 QLPVVDDDPGKLLGILSRSDLLSA 114
Score = 30.1 bits (68), Expect = 0.85
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVL 217
++++ +P +++LL I S V+D+ G G+VS +DI +L
Sbjct: 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREIL 49
>gnl|CDD|73129 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase)..
Length = 125
Score = 36.3 bits (84), Expect = 0.010
Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Query: 106 ATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSES 165
+ EA + + G +PV G++ D++ Y+ K N I L
Sbjct: 10 TPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGE-KFNKIKTGNGLEAI 68
Query: 166 N------LIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIV 214
N + +N++ + + D + E R+ V+D+ G G+V+ D++
Sbjct: 69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123
>gnl|CDD|73128 cd04630, CBS_pair_17, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase)..
Length = 114
Score = 35.9 bits (83), Expect = 0.017
Identities = 28/115 (24%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 101 AVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNI 160
++ ATV EA+ + +++G S + V K + G+V MRD+ + + A+ + + +
Sbjct: 5 TIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDI---LKKVVAEGRDPD-RV 60
Query: 161 QLSESNLIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS 215
+ E + K ++ V M + ++ + IR A V+ E+ G++S DI
Sbjct: 61 NVYEI-MTKPLISVSPDMDIKYCARLMERTNIRRAPVV-ENNELIGIISLTDIFL 113
>gnl|CDD|32729 COG2905, COG2905, Predicted signal-transduction protein containing
cAMP-binding and CBS domains [Signal transduction
mechanisms].
Length = 610
Score = 35.6 bits (82), Expect = 0.017
Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 101 AVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNI 160
+V+ ++EAMLM + +PV ++ P G++ + D++ S N+I L
Sbjct: 226 SVDRGDFLFEAMLMMLRNRIKHLPVTEDG--QPLGILTLTDILRLFSQ-----NSIVLVK 278
Query: 161 QLSESNLIKNI 171
+++ ++ I+ +
Sbjct: 279 RIARASSIEEL 289
>gnl|CDD|73093 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem
repeats of the cystathionine beta-synthase (CBS pair)
domains in the EriC CIC-type chloride channels in
bacteria and archaea. These ion channels are proteins
with a seemingly simple task of allowing the passive
flow of chloride ions across biological membranes.
CIC-type chloride channels come from all kingdoms of
life, have several gene families, and can be gated by
voltage. The members of the CIC-type chloride channel
are double-barreled: two proteins forming homodimers at
a broad interface formed by four helices from each
protein. The two pores are not found at this interface,
but are completely contained within each subunit, as
deduced from the mutational analyses, unlike many other
channels, in which four or five identical or
structurally related subunits jointly form one pore. CBS
is a small domain originally identified in cystathionine
beta-synthase and subsequently found in a wide range of
different proteins. CBS domains usually come in tandem
repeats, which associate to form a so-called Bateman
domain or a CBS pair which is reflected in this model.
The interface between the two CBS domains forms a cleft
that is a potential ligand binding site. The CBS pair
coexists with a variety of other functional domains. It
has been proposed that the CBS domain may play a
regulatory role, although its exact function is unknown.
Mutations of conserved residues within this domain in
CLC chloride channel family members have been associated
with classic Bartter syndrome, Osteopetrosis, Dent's
disease, idiopathic generalized epilepsy, and myotonia..
Length = 115
Score = 35.3 bits (81), Expect = 0.025
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 172 LFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSE 224
+ ++ + + + ES+ ALV+D GG G+++ D++ L D E
Sbjct: 4 PVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGE 56
>gnl|CDD|73098 cd04598, CBS_pair_GGDEF_assoc, This cd contains two tandem repeats
of the cystathionine beta-synthase (CBS pair) domains in
association with the GGDEF (DiGuanylate-Cyclase (DGC))
domain. The GGDEF domain has been suggested to be
homologous to the adenylyl cyclase catalytic domain and
is thought to be involved in regulating cell surface
adhesiveness in bacteria. CBS is a small domain
originally identified in cystathionine beta-synthase and
subsequently found in a wide range of different
proteins. CBS domains usually come in tandem repeats,
which associate to form a so-called Bateman domain or a
CBS pair which is reflected in this model. The interface
between the two CBS domains forms a cleft that is a
potential ligand binding site. The CBS pair coexists
with a variety of other functional domains. It has been
proposed that the CBS domain may play a regulatory role,
although its exact function is unknown..
Length = 119
Score = 35.1 bits (81), Expect = 0.027
Identities = 20/82 (24%), Positives = 38/82 (46%)
Query: 174 VPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMIS 233
V V+D+L + AL + + G GL+ E ++ +L + KK +
Sbjct: 6 VSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALMELLSTPYGRALYGKKPVSE 65
Query: 234 AVSDNTFIVDARTDLEELAKII 255
+ + IV+A T LEE++++
Sbjct: 66 VMDPDPLIVEADTPLEEVSRLA 87
>gnl|CDD|73142 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two
tandem repeats of the cystathionine beta-synthase (CBS
pair) domains associated with either the CAP_ED (cAMP
receptor protein effector domain) family of
transcription factors and the DUF294 domain or the PB1
(Phox and Bem1p) domain. Members of CAP_ED, include CAP
which binds cAMP, FNR (fumarate and nitrate reductase)
which uses an iron-sulfur cluster to sense oxygen, and
CooA a heme containing CO sensor. In all cases binding
of the effector leads to conformational changes and the
ability to activate transcription. DUF294 is a putative
nucleotidyltransferase with a conserved DxD motif. The
PB1 domain adopts a beta-grasp fold, similar to that
found in ubiquitin and Ras-binding domains. A motif,
variously termed OPR, PC and AID, represents the most
conserved region of the majority of PB1 domains, and is
necessary for PB1 domain function. This function is the
formation of PB1 domain heterodimers, although not all
PB1 domain pairs associate. CBS is a small domain
originally identified in cystathionine beta-synthase and
subsequently found in a wide range of different
proteins. CBS domains usually come in tandem repeats,
which associate to form a so-called Bateman domain or a
CBS pair which is reflected in this model. The interface
between the two CBS domains forms a cleft that is a
potential ligand binding site. The CBS pair coexists
with a variety of other functional domains. It has been
proposed that the CBS domain may play a regulatory role,
although its exact function is unknown..
Length = 111
Score = 35.1 bits (81), Expect = 0.028
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 89 IDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISY 145
+ ++M + + ATV+EA+L+ + G +PV + G++ D++
Sbjct: 59 VSEVMTAPPI--TIPPDATVFEALLLMLERGIHHLPVVDD--GRLVGVISATDLLRL 111
>gnl|CDD|32593 COG2524, COG2524, Predicted transcriptional regulator, contains
C-terminal CBS domains [Transcription].
Length = 294
Score = 33.3 bits (76), Expect = 0.090
Identities = 32/150 (21%), Positives = 71/150 (47%), Gaps = 15/150 (10%)
Query: 71 SETEKEIFNNILRFR---KIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYK 127
+T EI +I + K ++ ++M ++ V T+ EA +F + G PV
Sbjct: 153 DDTANEILIDISKMVSIPKEKVKNLMSKKLI--TVRPDDTLREAAKLFYEKGIRGAPVVD 210
Query: 128 NSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVPSSMLVSDLLTNI 187
+ D G++ + D+ I+ N NL+ ++S+ + KN++ + + D + +
Sbjct: 211 D--DKIVGIITLSDIAKAIA-------NGNLDAKVSDY-MRKNVITINEDEDIYDAIRLM 260
Query: 188 QESRIRMALVIDEHGGTDGLVSYEDIVSVL 217
++ + LV D +G G+++ DI++ +
Sbjct: 261 NKNNVGRLLVTDSNGKPVGIITRTDILTRI 290
>gnl|CDD|33866 COG4109, COG4109, Predicted transcriptional regulator containing
CBS domains [Transcription].
Length = 432
Score = 33.3 bits (76), Expect = 0.097
Identities = 37/173 (21%), Positives = 77/173 (44%), Gaps = 13/173 (7%)
Query: 47 KLMKLSHHKGIRLPRIDASLEGIFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKA 106
+++KL++ KG+ + + + K + N +++ I ++DIM + + +
Sbjct: 148 EVIKLANEKGLPVLSTSYDTFTVATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETD 207
Query: 107 TVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESN 166
TV + + + EK G S PV N G+V MRDV+ K + + ++
Sbjct: 208 TVEDWLDLVEKTGHSRFPVV-NRSMKVVGVVTMRDVLD-------KKPSTTIEKVMT--- 256
Query: 167 LIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMR 219
KN + V + V+ + + I M V+D + G+++ +D++ L
Sbjct: 257 --KNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM 307
>gnl|CDD|33251 COG3448, COG3448, CBS-domain-containing membrane protein [Signal
transduction mechanisms].
Length = 382
Score = 32.7 bits (74), Expect = 0.12
Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 22/163 (13%)
Query: 66 LEGIFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPV 125
LE + ETE + R ++ DIM SR + D ++ A + +++ +PV
Sbjct: 226 LERLLRETELQAL--RRRMGELTCADIM-SRDVVTVSTD-TSIDHARKLLQEHRIKALPV 281
Query: 126 YKNSLDNPR---GMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVPSSMLVSD 182
LD R G+V RD++ + + ++ +K I+ P + D
Sbjct: 282 ----LDEHRRLVGIVTQRDLLKHARPSPFQ------RLRFLRPPTVKGIMTTPVVTVRPD 331
Query: 183 -----LLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRD 220
L+ + + + V+D G G+VS D+++ L R+
Sbjct: 332 TPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRN 374
>gnl|CDD|73138 cd04640, CBS_pair_27, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase)..
Length = 126
Score = 31.7 bits (72), Expect = 0.27
Identities = 10/60 (16%), Positives = 27/60 (45%)
Query: 174 VPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMIS 233
+P+ + + L + + +R+ LV+D G+++ D++ E +S ++
Sbjct: 6 IPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELT 65
>gnl|CDD|73111 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem
repeats of the cystathionine beta-synthase (CBS pair)
domains in association with a PAS domain, a GGDEF
(DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain
downstream. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in signal
transduction. The GGDEF domain has been suggested to be
homologous to the adenylyl cyclase catalytic domain and
is thought to be involved in regulating cell surface
adhesiveness in bacteria. CBS is a small domain
originally identified in cystathionine beta-synthase and
subsequently found in a wide range of different
proteins. CBS domains usually come in tandem repeats,
which associate to form a so-called Bateman domain or a
CBS pair which is reflected in this model. The interface
between the two CBS domains forms a cleft that is a
potential ligand binding site. The CBS pair coexists
with a variety of other functional domains. It has been
proposed that the CBS domain may play a regulatory role,
although its exact function is unknown..
Length = 111
Score = 31.3 bits (71), Expect = 0.36
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 171 ILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS 215
+L VP+ + D ++E IR +V+D+ G GL+S D++
Sbjct: 66 LLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110
>gnl|CDD|73088 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two
tandem repeats of the cystathionine beta-synthase (CBS
pair) domains associated with the archaeal CAP_ED (cAMP
receptor protein effector domain) family of
transcription factors and the DUF294 domain. Members of
CAP_ED, include CAP which binds cAMP, FNR (fumarate and
nitrate reductase) which uses an iron-sulfur cluster to
sense oxygen, and CooA a heme containing CO sensor. In
all cases binding of the effector leads to
conformational changes and the ability to activate
transcription. DUF294 is a putative
nucleotidyltransferase with a conserved DxD motif. CBS
is a small domain originally identified in cystathionine
beta-synthase and subsequently found in a wide range of
different proteins. CBS domains usually come in tandem
repeats, which associate to form a so-called Bateman
domain or a CBS pair which is reflected in this model.
The interface between the two CBS domains forms a cleft
that is a potential ligand binding site. The CBS pair
coexists with a variety of other functional domains. It
has been proposed that the CBS domain may play a
regulatory role, although its exact function is
unknown..
Length = 110
Score = 30.9 bits (70), Expect = 0.46
Identities = 19/114 (16%), Positives = 47/114 (41%), Gaps = 10/114 (8%)
Query: 101 AVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNI 160
+ AT+ EA +F + PV + G+V + D+ I+
Sbjct: 5 TLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIA-------RGLELA 55
Query: 161 QLSESNLIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIV 214
++ + + K+++ + + D + + + + +V D+ G G+++ DI+
Sbjct: 56 KVKDV-MTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDIL 108
>gnl|CDD|30863 COG0517, COG0517, FOG: CBS domain [General function prediction
only].
Length = 117
Score = 30.5 bits (68), Expect = 0.69
Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 13/128 (10%)
Query: 89 IDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISH 148
+ DIM V V+ +V +A+L+ + G S +PV + G++ RD++ ++
Sbjct: 1 VKDIMTKDVIT--VKPDTSVRDALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAA 56
Query: 149 MYAKTNNINLNIQLSESNLIKNILFVPSSMLVSDLLTNIQES-RIRMALVIDEHGGT-DG 206
+ + + + K ++ V + + L + E +IR V+D+ GG G
Sbjct: 57 GGKRLLPV-------KEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVG 109
Query: 207 LVSYEDIV 214
+++ DI+
Sbjct: 110 IITLSDIL 117
Score = 29.7 bits (66), Expect = 1.1
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 48 LMKLSHHKGIRLPRIDAS-LEGIFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKA 106
L+ +S + +P +D L GI TE++I + K + + + V+
Sbjct: 22 LLLMSENGVSAVPVVDDGKLVGII--TERDILRALAAGGKRLLPVKEVMTKPVVTVDPDT 79
Query: 107 TVYEAM-LMFEKYGRSWMPVYKNSLDNPRGMVHMRDVI 143
+ EA+ LM E++ +PV + G++ + D++
Sbjct: 80 PLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117
>gnl|CDD|37390 KOG2179, KOG2179, KOG2179, Nucleotide excision repair complex
XPC-HR23B, subunit XPC/DPB11 [Replication, recombination
and repair].
Length = 669
Score = 30.0 bits (67), Expect = 0.99
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 3 SDFKINSSEHPKEKNEGIDLSPSISKTSVPAFWTRTIRALCKTWKLMKLSHHKGIR---- 58
++N+ K K PS S+ S AF ++ R L+ LS + IR
Sbjct: 112 DPVRLNALVRSKPKKIRKSFKPSSSRKS-QAFKNKSRRKTLHGLVLVCLSKYGKIRTNFL 170
Query: 59 -LPRIDASLEGIFSETEKE 76
D E + SE+E +
Sbjct: 171 RKNYADLKNENLISESELK 189
>gnl|CDD|73145 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase)..
Length = 122
Score = 29.4 bits (66), Expect = 1.3
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 187 IQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITS--EHHSKKSMISAVSD----NTF 240
++E RIR V++E G GL++ D++ + ++ E K V++ +
Sbjct: 19 MREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVL 78
Query: 241 IVDARTDLEELAKIIGTD-CNCLKGEQDVDSLGGLI 275
V T L E A+I+ + CL D +L G+I
Sbjct: 79 TVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGII 114
>gnl|CDD|143594 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransferase (GAT,
glutaminase) domain of glutamine-dependent NAD
synthetases (class 7 and 8 nitrilases).
Glutamine-dependent NAD synthetases are bifunctional
enzymes, which have an N-terminal GAT domain and a
C-terminal NAD+ synthetase domain. The GAT domain is a
glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to
L-glutamate and ammonia. The ammonia is used by the NAD+
synthetase domain in the ATP-dependent amidation of
nicotinic acid adenine dinucleotide. Glutamine
aminotransferases are categorized depending on their
active site residues into different unrelated classes.
This class of GAT domain belongs to a larger nitrilase
superfamily comprised of nitrile- or amide-hydrolyzing
enzymes and amide-condensing enzymes, which depend on a
Glu-Lys-Cys catalytic triad. This superfamily has been
classified in the literature based on global and
structure based sequence analysis into thirteen
different enzyme classes (referred to as 1-13), this
subgroup corresponds to classes 7 and 8. Members of this
superfamily generally form homomeric complexes, the
basic building block of which is a homodimer.
Mycobacterium tuberculosis glutamine-dependent NAD+
synthetase forms a homooctamer.
Length = 261
Score = 29.4 bits (67), Expect = 1.6
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 274 LIFS----VLDRIPARGEVVLEIPGFEIVILDADVRCVRRVRIR 313
L+F + D GE++ E P FE + D D+ +R R R
Sbjct: 209 LVFDGGSFIAD---NDGELLAEAPRFEEDLADVDLDRLRSERRR 249
>gnl|CDD|73121 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase)..
Length = 113
Score = 29.3 bits (66), Expect = 1.6
Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 102 VEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQ 161
V T+ EA + ++ +PV +N D G+V RD++ + A + +
Sbjct: 6 VSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIV-----VRAVAEGRDPDTT 58
Query: 162 LSESNLIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIV 214
+ + ++ V V + ++E ++R V+D+ G G+VS D+
Sbjct: 59 TVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLA 111
>gnl|CDD|72966 cd04494, BRCA2DBD_OB2, BRCA2DBD_OB2: A subfamily of OB folds
corresponding to the second OB fold (OB2) of the
800-amino acid C-terminal ssDNA binding domain (DBD) of
BRCA2 (breast cancer susceptibility gene 2) protein,
called BRCA2DBD. BRCA2 participates in homologous
recombination-mediated repair of double-strand DNA
breaks. It stimulates the displacement of Replication
protein A (RPA), the most abundant eukaryotic ssDNA
binding protein. It also facilitates filament formation.
Mutations that map throughout the BRCA2 protein are
associated with breast cancer susceptibility. BRCA2 is a
large nuclear protein and its most conserved region is
the C-terminal BRCA2DBD. BRCA2DBD binds ssDNA in vitro,
and is composed of five structural domains, three of
which are OB folds (OB1, OB2, and OB3). BRCA2DBD OB2 and
OB3 are arranged in tandem, and their mode of binding
can be considered qualitatively similar to two OB folds
of RPA1, DBD-A and DBD-B (the major DBDs of RPA)..
Length = 251
Score = 28.4 bits (63), Expect = 2.5
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 61 RIDASLEGIFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAM 112
R LE +FS+ ++E + R +R ++ ++D A +YEA+
Sbjct: 54 RQQKKLEALFSKIQEEFEKEEEDNNQRRPRSRTRTRQNVTDLQDGAELYEAL 105
>gnl|CDD|73087 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two
tandem repeats of the cystathionine beta-synthase (CBS
pair) domains associated with either the CAP_ED (cAMP
receptor protein effector domain) family of
transcription factors and the DUF294 domain or the PB1
(Phox and Bem1p) domain. Members of CAP_ED, include CAP
which binds cAMP, FNR (fumarate and nitrate reductase)
which uses an iron-sulfur cluster to sense oxygen, and
CooA a heme containing CO sensor. In all cases binding
of the effector leads to conformational changes and the
ability to activate transcription. DUF294 is a putative
nucleotidyltransferase with a conserved DxD motif. The
PB1 domain adopts a beta-grasp fold, similar to that
found in ubiquitin and Ras-binding domains. A motif,
variously termed OPR, PC and AID, represents the most
conserved region of the majority of PB1 domains, and is
necessary for PB1 domain function. This function is the
formation of PB1 domain heterodimers, although not all
PB1 domain pairs associate. CBS is a small domain
originally identified in cystathionine beta-synthase and
subsequently found in a wide range of different
proteins. CBS domains usually come in tandem repeats,
which associate to form a so-called Bateman domain or a
CBS pair which is reflected in this model. The interface
between the two CBS domains forms a cleft that is a
potential ligand binding site. The CBS pair coexists
with a variety of other functional domains. It has been
proposed that the CBS domain may play a regulatory role,
although its exact function is unknown..
Length = 113
Score = 28.6 bits (64), Expect = 2.6
Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 7/108 (6%)
Query: 107 TVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESN 166
TV EA + + S + V + G+ +D+ + ++ L E
Sbjct: 11 TVQEAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIA-----LRVVAQGLDPESTLVERV 63
Query: 167 LIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIV 214
+ N + S V + L + + + R V+D+ G GL+ +
Sbjct: 64 MTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLT 111
>gnl|CDD|37329 KOG2118, KOG2118, KOG2118, Predicted membrane protein, contains two
CBS domains [Function unknown].
Length = 498
Score = 28.1 bits (62), Expect = 3.2
Identities = 32/152 (21%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Query: 74 EKEIFNNILRFRKIRIDDIMISRVSINAVEDKAT-VYEAMLMFEKYGRSWMPVYKNSLDN 132
E I L + + ++M + A++ E + K+G S +PVY+ N
Sbjct: 191 ELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKN 250
Query: 133 PRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVPSSMLVSDLLTNIQESRI 192
G + + +++ + + + +SES L + VP +M + DLL Q+ +
Sbjct: 251 KIGGLLVMNLLRLL----QVEVPLE-PLPVSESAL-LRLPLVPENMPLLDLLNEFQKGKS 304
Query: 193 RMALVIDEHGGTDGLVSYEDIVSVLMRDITSE 224
MA+V + H D V + + +++++ E
Sbjct: 305 HMAVVRNGHV--DIFVLTLEDLEEVVKEVEDE 334
>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated
serine/threonine kinase-like proteins. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MAST kinase subfamily
includes MAST kinases, MAST-like (MASTL) kinases, and
fungal kinases with similarity to Saccharomyces
cerevisiae Rim15 and Schizosaccharomyces pombe cek1.
MAST kinases contain an N-terminal domain of unknown
function, a central catalytic domain, and a C-terminal
PDZ domain that mediates protein-protein interactions.
MASTL kinases carry only a catalytic domain which
contains a long insert relative to other kinases. The
fungal kinases in this subfamily harbor other domains in
addition to a central catalytic domain, which also
contains an insert relative to MAST kinases like MASTL.
Rim15 contains a C-terminal signal receiver (REC) domain
while cek1 contains an N-terminal PAS domain. MAST
kinases are cytoskeletal associated kinases of unknown
function that are also expressed at neuromuscular
junctions and postsynaptic densities. The fungal
proteins Rim15 and cek1 are involved in the regulation
of meiosis and mitosis, respectively.
Length = 265
Score = 28.0 bits (63), Expect = 3.2
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 66 LEGI---FSETEKEIFNNILRFRKIRIDDIMISRVSINAVED 104
L GI ET +EIF NIL + +D+ +S +I+ +
Sbjct: 195 LVGIPPFHGETPEEIFQNILNGKIEWPEDVEVSDEAIDLISK 236
>gnl|CDD|30495 COG0146, HyuB, N-methylhydantoinase B/acetone carboxylase, alpha
subunit [Amino acid transport and metabolism / Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 563
Score = 28.3 bits (63), Expect = 3.2
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 53 HHKGIRLPRIDASLEGIFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAM 112
+G+R+P + G F E I +R I D+ ++++ N
Sbjct: 144 FQEGLRIPPVKLVKNGEFREDILRILLRNVRTPDYNIGDLK-AQIAAN----LKGRRRVR 198
Query: 113 LMFEKYGR-SWMPVYKNSLDNPRGMVHMRDVISYIS 147
+ ++YG + K ++ V R VI +
Sbjct: 199 ELIDEYGLDTVEEAMKEVIEYAERAV--RAVIRKLP 232
>gnl|CDD|38870 KOG3666, KOG3666, KOG3666, Uncharacterized conserved protein
[Function unknown].
Length = 1141
Score = 28.1 bits (62), Expect = 3.4
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 72 ETEKEIFNNILRFRKIRIDDIMIS---RVSINAVED-KATVYEAMLMFEKYGRSWMPVYK 127
KE+ N + F+KI + D + + +NAV K+ V + ++ ++
Sbjct: 868 MLVKELQNFLSMFQKIILSDRTVQDTLKTLMNAVSPLKSIVANSNKIYFSAIAKTQKIWT 927
Query: 128 NSLD 131
L+
Sbjct: 928 ALLE 931
>gnl|CDD|73101 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains in the
inosine 5' monophosphate dehydrogenase (IMPDH) protein.
IMPDH is an essential enzyme that catalyzes the first
step unique to GTP synthesis, playing a key role in the
regulation of cell proliferation and differentiation.
CBS is a small domain originally identified in
cystathionine beta-synthase and subsequently found in a
wide range of different proteins. CBS domains usually
come in tandem repeats, which associate to form a
so-called Bateman domain or a CBS pair which is
reflected in this model. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains. It has been proposed that the
CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain in IMPDH have been
associated with retinitis pigmentosa..
Length = 110
Score = 28.1 bits (63), Expect = 3.6
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 102 VEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQ 161
V ATV EA+ + +YG S +PV + G+V RD + + + +L+
Sbjct: 7 VSPDATVAEALELMAEYGISGLPVVDDD-GKLVGIVTNRD-LRFET---------DLDKP 55
Query: 162 LSESNLIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIV 214
+SE +N+L + + L + E +I V+D+ G GL++ +DI
Sbjct: 56 VSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIE 108
>gnl|CDD|73140 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase)..
Length = 126
Score = 27.9 bits (62), Expect = 3.8
Identities = 19/129 (14%), Positives = 52/129 (40%), Gaps = 14/129 (10%)
Query: 98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVH---MRDV-------ISYIS 147
+ +++ V +A + K S +PV +D ++ D+ +
Sbjct: 2 KVVSIDSDERVLDAFKLMRKNNISGLPV----VDEKGKLIGNISASDLKGLLLSPDDLLL 57
Query: 148 HMYAKTNNINLNIQLSESNLIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGL 207
+ ++ S+ + ++ S + +++T + +++ V+DE G G+
Sbjct: 58 YRTITFKELSEKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGV 117
Query: 208 VSYEDIVSV 216
++ DI+S+
Sbjct: 118 ITLTDIISI 126
>gnl|CDD|144171 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain. This
family is involved in biosynthesis of guanosine
nucleotide. Members of this family contain a TIM barrel
structure. In the inosine monophosphate dehydrogenases 2
CBS domains pfam00571 are inserted in the TIM barrel.
This family is a member of the common phosphate binding
site TIM barrel family.
Length = 467
Score = 27.6 bits (62), Expect = 4.4
Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 30/163 (18%)
Query: 88 RIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNS-----LDNPRGMVHMRDV 142
R + I+ V TV EA+ + E+YG S +PV ++ L R + +
Sbjct: 83 RFESGFITDPVT--VSPDTTVAEALELKERYGISGVPVTEDGKLLGGLVGIRTSRDIDFL 140
Query: 143 ISYISHMYAKTNNINL--NIQLSESNLIKNILFVPSSMLVSDLLTNIQESRIRMALVIDE 200
M + + I L E+N I + E +I ++D+
Sbjct: 141 SKVSVVMTMTEDLVTAPEGITLEEANEI------------------LHEHKIEKLPIVDD 182
Query: 201 HGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISA---VSDNTF 240
G GL++ +DI S+ + ++ A D+
Sbjct: 183 DGELVGLITRKDIEKARDYPNASKDAQGRLLVGAAVGTRDDDL 225
>gnl|CDD|144473 pfam00888, Cullin, Cullin family.
Length = 605
Score = 27.6 bits (61), Expect = 5.0
Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 13/139 (9%)
Query: 125 VYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVPSSMLVSDLL 184
YK M + ++ Y++ Y K + +L +++ L+ LL
Sbjct: 73 YYKEWNKFSTSMKILNNIFMYLNRYYVKRKEVYEIYELGLDIWRESLFDPIKDKLIDALL 132
Query: 185 TNIQESR---------IRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMI--- 232
I++ R I+ L + G D L Y++ + TSE + K+S
Sbjct: 133 RLIEKERLGEIIDRSLIKNVLDMFVELGDDSLSVYKEDFEKPFLEATSEFYKKESSKFLQ 192
Query: 233 -SAVSDNTFIVDARTDLEE 250
++VS+ V+ R + EE
Sbjct: 193 ENSVSEYMKKVEERLEEEE 211
>gnl|CDD|73109 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats
of the cystathionine beta-synthase (CBS pair) domains
associated with the pyridoxal-phosphate (PALP) dependent
enzyme domain upstream. The vitamin B6 complex
comprises pyridoxine, pyridoxal, and pyridoxamine, as
well as the 5'-phosphate esters of pyridoxal (PALP) and
pyridoxamine, the last two being the biologically active
coenzyme derivatives. The members of the PALP family
are principally involved in the biosynthesis of amino
acids and amino acid-derived metabolites, but they are
also found in the biosynthetic pathways of amino sugars
and other amine-containing compounds. CBS is a small
domain originally identified in cystathionine
beta-synthase and subsequently found in a wide range of
different proteins. CBS domains usually come in tandem
repeats, which associate to form a so-called Bateman
domain or a CBS pair which is reflected in this model.
The interface between the two CBS domains forms a cleft
that is a potential ligand binding site. The CBS pair
coexists with a variety of other functional domains. It
has been proposed that the CBS domain may play a
regulatory role, although its exact function is
unknown..
Length = 110
Score = 27.4 bits (61), Expect = 5.5
Identities = 20/111 (18%), Positives = 44/111 (39%), Gaps = 13/111 (11%)
Query: 106 ATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSES 165
+ E M +YG S +PV + G + D++ + +L +
Sbjct: 13 SQAIERM---REYGVSQLPVVDD--GRVVGSIDESDLLD---ALIEGKAKFSLPV---RE 61
Query: 166 NLIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV 216
+ + + V + +L + R +A+V+DE G G+++ D++
Sbjct: 62 VMGEPLPTVDPDAPIEELSELLD--RGNVAVVVDEGGKFVGIITRADLLKY 110
>gnl|CDD|73123 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase)..
Length = 112
Score = 27.5 bits (61), Expect = 5.5
Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 10/114 (8%)
Query: 102 VEDKATVYE-AMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNI 160
V+ ++ E A LM E+ S V + + P G+V RD++ A I+L+
Sbjct: 6 VDPDTSIREAAKLMAEENVGS--VVVVDPDERPIGIVTERDIV------RAVAAGIDLDT 57
Query: 161 QLSESNLIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIV 214
+SE + ++++ V V++ ++++ IR LV+D+ G G++S D+V
Sbjct: 58 PVSEI-MTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLV 110
>gnl|CDD|99790 cd06193, siderophore_interacting, Siderophore interacting proteins
share the domain structure of the ferredoxin reductase
like family. Siderophores are produced in various
bacteria (and some plants) to extract iron from hosts.
Binding constants are high, so iron can be pilfered from
transferrin and lactoferrin for bacterial uptake,
contributing to pathogen virulence. Ferredoxin reductase
(FNR), an FAD and NAD(P) binding protein, was intially
identified as a chloroplast reductase activity,
catalyzing the electron transfer from reduced
iron-sulfur protein ferredoxin to NADP+ as the final
step in the electron transport mechanism of photosystem
I. FNR transfers electrons from reduced ferredoxin to
FAD (forming FADH2 via a semiquinone intermediate) and
then transfers a hydride ion to convert NADP+ to NADPH.
FNR has since been shown to utilize a variety of
electron acceptors and donors and has a variety of
physiological functions including nitrogen assimilation,
dinitrogen fixation, steroid hydroxylation, fatty acid
metabolism, oxygenase activity, and methane assimilation
in a variety of organisms. FNR has an NAD(P)-binding
sub-domain of the alpha/beta class and a discrete
(usually N-terminal) flavin sub-domain which vary in
orientation with respect to the NAD(P) binding domain.
The N-terminal moeity may contain a flavin prosthetic
group (as in flavoenzymes) or use flavin as a substrate.
Because flavins such as FAD can exist in oxidized,
semiquinone (one-electron reduced), or fully reduced
hydroquinone forms, FNR can interact with one and two
electron carriers. FNR has a strong preference for
NADP(H) vs NAD(H)..
Length = 235
Score = 27.2 bits (61), Expect = 5.6
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Query: 275 IFSVLDRIP--ARGEVVLEIPG-FEIVILDA----DVRCVRR 309
I ++L+ +P ARG ++E+P + L A +V + R
Sbjct: 135 IAAILEELPADARGTALIEVPDAADEQPLPAPAGVEVTWLHR 176
>gnl|CDD|36589 KOG1375, KOG1375, KOG1375, Beta tubulin [Cytoskeleton].
Length = 369
Score = 27.4 bits (60), Expect = 5.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 250 ELAKIIGTDCNCLKGEQDVDSLGG 273
E A+++ + C+CL+G Q SLGG
Sbjct: 63 EGAELVDSSCDCLQGFQLTHSLGG 86
>gnl|CDD|73122 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase)..
Length = 113
Score = 27.0 bits (60), Expect = 6.3
Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSK 228
++++ V V++ + E I +V+D+ G G+ S DIV + S +
Sbjct: 1 RDVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTP 60
Query: 229 KSMISAVSDNTFIVDARTDLEELAKII 255
S I ++ N V ++E ++
Sbjct: 61 VSEI--MTRNVITVTPDDTVDEAMALM 85
>gnl|CDD|73104 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem
repeats of the cystathionine beta-synthase (CBS pair)
domains associated with KpsF/GutQ domains in the API
[A5P (D-arabinose 5-phosphate) isomerase] protein.
These APIs catalyze the conversion of the pentose
pathway intermediate D-ribulose 5-phosphate into A5P, a
precursor of 3-deoxy-D-manno-octulosonate, which is an
integral carbohydrate component of various glycolipids
coating the surface of the outer membrane of
Gram-negative bacteria, including lipopolysaccharide and
many group 2 K-antigen capsules. CBS is a small domain
originally identified in cystathionine beta-synthase and
subsequently found in a wide range of different
proteins. CBS domains usually come in tandem repeats,
which associate to form a so-called Bateman domain or a
CBS pair which is reflected in this model. The
interface between the two CBS domains forms a cleft that
is a potential ligand binding site. The CBS pair
coexists with a variety of other functional domains. It
has been proposed that the CBS domain may play a
regulatory role, although its exact function is
unknown..
Length = 114
Score = 27.0 bits (60), Expect = 7.5
Identities = 9/43 (20%), Positives = 23/43 (53%)
Query: 174 VPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV 216
+ L ++ L ++E++I V+D++G G++ D++
Sbjct: 72 IDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLRA 114
>gnl|CDD|36975 KOG1764, KOG1764, KOG1764, 5'-AMP-activated protein kinase, gamma
subunit [Energy production and conversion].
Length = 381
Score = 26.9 bits (59), Expect = 7.6
Identities = 36/184 (19%), Positives = 71/184 (38%), Gaps = 14/184 (7%)
Query: 47 KLMKLSHHKGIRLPRID---ASLEGIFSETE--KEIFNNILRFRKIRIDDIMISRVSINA 101
++ L + R+P ID + I ++ K ++ N + +S + I
Sbjct: 176 AVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGT 235
Query: 102 VEDKA------TVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYI-SHMYAKTN 154
+ A V EA+ + + S +PV + G DVI Y +
Sbjct: 236 WSNIASISEDTPVIEALKIMSERRISALPVV-DENGKKVGNYSRFDVIHLAREGTYNNLD 294
Query: 155 NINLNIQLSESNLIKN-ILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDI 213
L+ LS + ++ + +++++ + R+ V+DE G G++S DI
Sbjct: 295 LSCLSEALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDI 354
Query: 214 VSVL 217
+S L
Sbjct: 355 LSYL 358
>gnl|CDD|73107 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two
tandem repeats of the cystathionine beta-synthase (CBS
pair) domain associated with the NTP (Nucleotidyl
transferase) domain downstream. CBS is a small domain
originally identified in cystathionine beta-synthase and
subsequently found in a wide range of different
proteins. CBS domains usually come in tandem repeats,
which associate to form a so-called Bateman domain or a
CBS pair which is reflected in this model. The interface
between the two CBS domains forms a cleft that is a
potential ligand binding site. The CBS pair coexists
with a variety of other functional domains. It has been
proposed that the CBS domain may play a regulatory role,
although its exact function is unknown..
Length = 113
Score = 27.0 bits (60), Expect = 7.7
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 168 IKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHS 227
IK +L P + ++ D L I ++ +R+ LV+DE+G G V+ DI L++ ++ +
Sbjct: 2 IKQLLVSPDASIL-DALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLSLD--- 57
Query: 228 KKSMISAVSDNTFIV-DARTDLEELAKI 254
+S V + I + EE+ +
Sbjct: 58 --DPVSEVMNRNPITAKVGSSREEILAL 83
>gnl|CDD|176919 cd08910, START_STARD2-like, Lipid-binding START domain of mammalian
STARD2 and related proteins. This subgroup includes the
steroidogenic acute regulatory protein (StAR)-related
lipid transfer (START) domains of STARD2 (also known as
phosphatidylcholine transfer protein/PC-TP) and related
proteins. It belongs to the START domain family, and in
turn to the SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
superfamily of proteins that bind hydrophobic ligands.
SRPBCC domains have a deep hydrophobic ligand-binding
pocket. STARD2 is a cytosolic phosphatidycholine
(PtdCho) transfer protein, which traffics PtdCho, the
most common class of phospholipids in eukaryotes,
between membranes. It represents a minimal START domain
structure. STARD2 plays roles in hepatic cholesterol
metabolism, in the development of atherosclerosis, and
may have a mitochondrial function.
Length = 207
Score = 26.7 bits (59), Expect = 7.9
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 82 LRFRKIRIDDIMISRVSINAVEDKATV-----YEAMLMFEKYGRSWMPVYKNSLDNPRGM 136
+ RKI + I+ S+ + +K V Y+ L E G+ V+ DNP GM
Sbjct: 122 VEGRKIWV--ILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGM 179
Query: 137 VHMRDVISYISHMYAKT 153
+ S++ + AK
Sbjct: 180 IP-----SWLINWAAKN 191
>gnl|CDD|36229 KOG1011, KOG1011, KOG1011, Neurotransmitter release regulator,
UNC-13 [Signal transduction mechanisms, Intracellular
trafficking, secretion, and vesicular transport].
Length = 1283
Score = 26.6 bits (58), Expect = 8.6
Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 183 LLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIV 242
L+ N+Q+ R+++ + + GG + D++ L + +S +SAV +F
Sbjct: 850 LMNNVQQLRVQLEKMFEAMGGKELDEEAGDVLKELQVKL----NSVLDELSAVFVTSFQP 905
Query: 243 DARTDLEELAKII----GTDCNCLKGEQDVDSLGGLIFSVLD 280
+ ++ I+ GT QD D++ + +LD
Sbjct: 906 HIHECVIQMGDILVQVKGTGLAKTSVAQDADAVLEPLMDLLD 947
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.136 0.389
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,790,637
Number of extensions: 198681
Number of successful extensions: 521
Number of sequences better than 10.0: 1
Number of HSP's gapped: 496
Number of HSP's successfully gapped: 71
Length of query: 320
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 226
Effective length of database: 4,232,491
Effective search space: 956542966
Effective search space used: 956542966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.1 bits)