BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780426|ref|YP_003064839.1| hemolysin protein [Candidatus Liberibacter asiaticus str. psy62] (320 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780426|ref|YP_003064839.1| hemolysin protein [Candidatus Liberibacter asiaticus str. psy62] Length = 320 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/320 (100%), Positives = 320/320 (100%) Query: 1 MMSDFKINSSEHPKEKNEGIDLSPSISKTSVPAFWTRTIRALCKTWKLMKLSHHKGIRLP 60 MMSDFKINSSEHPKEKNEGIDLSPSISKTSVPAFWTRTIRALCKTWKLMKLSHHKGIRLP Sbjct: 1 MMSDFKINSSEHPKEKNEGIDLSPSISKTSVPAFWTRTIRALCKTWKLMKLSHHKGIRLP 60 Query: 61 RIDASLEGIFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGR 120 RIDASLEGIFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGR Sbjct: 61 RIDASLEGIFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGR 120 Query: 121 SWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVPSSMLV 180 SWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVPSSMLV Sbjct: 121 SWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVPSSMLV 180 Query: 181 SDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTF 240 SDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTF Sbjct: 181 SDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTF 240 Query: 241 IVDARTDLEELAKIIGTDCNCLKGEQDVDSLGGLIFSVLDRIPARGEVVLEIPGFEIVIL 300 IVDARTDLEELAKIIGTDCNCLKGEQDVDSLGGLIFSVLDRIPARGEVVLEIPGFEIVIL Sbjct: 241 IVDARTDLEELAKIIGTDCNCLKGEQDVDSLGGLIFSVLDRIPARGEVVLEIPGFEIVIL 300 Query: 301 DADVRCVRRVRIRRLVHFKN 320 DADVRCVRRVRIRRLVHFKN Sbjct: 301 DADVRCVRRVRIRRLVHFKN 320 >gi|255764470|ref|YP_003064828.2| integral membrane protein TerC [Candidatus Liberibacter asiaticus str. psy62] Length = 523 Score = 53.9 bits (128), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 59/248 (23%), Positives = 110/248 (44%), Gaps = 16/248 (6%) Query: 69 IFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKN 128 I S+ EK++ ++L IM R I ++ + + G S PV + Sbjct: 286 IISDQEKDMVQSVLTLADRPAKSIMTPRTEIVWLDVNCVDEDLQWKILELGHSRFPVAQG 345 Query: 129 SLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVPSSMLVSDLLTNIQ 188 SLD+ G+V RD++ + ++N + S I+ L V ++ V L+ ++ Sbjct: 346 SLDSFIGIVSARDLLRDL------LEEGSMNFKRS----IRKPLVVHENISVLKLMERLR 395 Query: 189 ESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDL 248 +S +V+DE+G +G+++ +I+ + D E K I+ D + VD D+ Sbjct: 396 KSSQTFVMVLDEYGVLEGMITPANILEAIAGDFPDEDDQKLD-ITVGDDGSLTVDGWIDV 454 Query: 249 EELAKIIGTDCNCLKGEQDVDSLGGLIFSVLDRIPARGEVVLEIP-GFEIVILDADVRCV 307 +K+ G N + + +L G I L +P E+ E+ FEI+ L+ + Sbjct: 455 RYASKLFG--VNLVDEDDRYSTLAGFILWRLGHLPQEKEIFTEMNLKFEIIRLEG--HNI 510 Query: 308 RRVRIRRL 315 RV++ L Sbjct: 511 DRVKVSGL 518 >gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 493 Score = 35.4 bits (80), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 14/140 (10%) Query: 106 ATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSES 165 AT+ +A+ + +KY S +PV ++ + G++ RDV N Q + Sbjct: 109 ATLADALALMKKYSISGIPVVESDVGKLVGILTNRDV------------RFASNAQQAVG 156 Query: 166 NLI-KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIV-SVLMRDITS 223 L+ +N++ V ++ + + + + RI LV+D+ G GL++ +DI S L + T Sbjct: 157 ELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERSQLNPNATK 216 Query: 224 EHHSKKSMISAVSDNTFIVD 243 + + + +AVS I D Sbjct: 217 DSKGRLRVAAAVSVAKDIAD 236 >gi|254780301|ref|YP_003064714.1| dihydroorotase [Candidatus Liberibacter asiaticus str. psy62] Length = 431 Score = 22.7 bits (47), Expect = 7.8, Method: Compositional matrix adjust. Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 231 MISAVSDNTFIVDARTDLEELAKII 255 M S V +NT I+D D++E+ II Sbjct: 1 MTSFVLNNTRIIDPSRDIDEVGAII 25 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.136 0.389 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 202,664 Number of Sequences: 1233 Number of extensions: 8469 Number of successful extensions: 29 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 10 length of query: 320 length of database: 328,796 effective HSP length: 74 effective length of query: 246 effective length of database: 237,554 effective search space: 58438284 effective search space used: 58438284 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 38 (19.2 bits)