BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780426|ref|YP_003064839.1| hemolysin protein [Candidatus
Liberibacter asiaticus str. psy62]
         (320 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780426|ref|YP_003064839.1| hemolysin protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 320

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/320 (100%), Positives = 320/320 (100%)

Query: 1   MMSDFKINSSEHPKEKNEGIDLSPSISKTSVPAFWTRTIRALCKTWKLMKLSHHKGIRLP 60
           MMSDFKINSSEHPKEKNEGIDLSPSISKTSVPAFWTRTIRALCKTWKLMKLSHHKGIRLP
Sbjct: 1   MMSDFKINSSEHPKEKNEGIDLSPSISKTSVPAFWTRTIRALCKTWKLMKLSHHKGIRLP 60

Query: 61  RIDASLEGIFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGR 120
           RIDASLEGIFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGR
Sbjct: 61  RIDASLEGIFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGR 120

Query: 121 SWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVPSSMLV 180
           SWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVPSSMLV
Sbjct: 121 SWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVPSSMLV 180

Query: 181 SDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTF 240
           SDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTF
Sbjct: 181 SDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTF 240

Query: 241 IVDARTDLEELAKIIGTDCNCLKGEQDVDSLGGLIFSVLDRIPARGEVVLEIPGFEIVIL 300
           IVDARTDLEELAKIIGTDCNCLKGEQDVDSLGGLIFSVLDRIPARGEVVLEIPGFEIVIL
Sbjct: 241 IVDARTDLEELAKIIGTDCNCLKGEQDVDSLGGLIFSVLDRIPARGEVVLEIPGFEIVIL 300

Query: 301 DADVRCVRRVRIRRLVHFKN 320
           DADVRCVRRVRIRRLVHFKN
Sbjct: 301 DADVRCVRRVRIRRLVHFKN 320


>gi|255764470|ref|YP_003064828.2| integral membrane protein TerC [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 523

 Score = 53.9 bits (128), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 110/248 (44%), Gaps = 16/248 (6%)

Query: 69  IFSETEKEIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKN 128
           I S+ EK++  ++L         IM  R  I  ++      +      + G S  PV + 
Sbjct: 286 IISDQEKDMVQSVLTLADRPAKSIMTPRTEIVWLDVNCVDEDLQWKILELGHSRFPVAQG 345

Query: 129 SLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVPSSMLVSDLLTNIQ 188
           SLD+  G+V  RD++  +          ++N + S    I+  L V  ++ V  L+  ++
Sbjct: 346 SLDSFIGIVSARDLLRDL------LEEGSMNFKRS----IRKPLVVHENISVLKLMERLR 395

Query: 189 ESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDL 248
           +S     +V+DE+G  +G+++  +I+  +  D   E   K   I+   D +  VD   D+
Sbjct: 396 KSSQTFVMVLDEYGVLEGMITPANILEAIAGDFPDEDDQKLD-ITVGDDGSLTVDGWIDV 454

Query: 249 EELAKIIGTDCNCLKGEQDVDSLGGLIFSVLDRIPARGEVVLEIP-GFEIVILDADVRCV 307
              +K+ G   N +  +    +L G I   L  +P   E+  E+   FEI+ L+     +
Sbjct: 455 RYASKLFG--VNLVDEDDRYSTLAGFILWRLGHLPQEKEIFTEMNLKFEIIRLEG--HNI 510

Query: 308 RRVRIRRL 315
            RV++  L
Sbjct: 511 DRVKVSGL 518


>gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate dehydrogenase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 493

 Score = 35.4 bits (80), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 14/140 (10%)

Query: 106 ATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSES 165
           AT+ +A+ + +KY  S +PV ++ +    G++  RDV                N Q +  
Sbjct: 109 ATLADALALMKKYSISGIPVVESDVGKLVGILTNRDV------------RFASNAQQAVG 156

Query: 166 NLI-KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIV-SVLMRDITS 223
            L+ +N++ V  ++ + +    + + RI   LV+D+ G   GL++ +DI  S L  + T 
Sbjct: 157 ELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERSQLNPNATK 216

Query: 224 EHHSKKSMISAVSDNTFIVD 243
           +   +  + +AVS    I D
Sbjct: 217 DSKGRLRVAAAVSVAKDIAD 236


>gi|254780301|ref|YP_003064714.1| dihydroorotase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 431

 Score = 22.7 bits (47), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 231 MISAVSDNTFIVDARTDLEELAKII 255
           M S V +NT I+D   D++E+  II
Sbjct: 1   MTSFVLNNTRIIDPSRDIDEVGAII 25


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.136    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,664
Number of Sequences: 1233
Number of extensions: 8469
Number of successful extensions: 29
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 10
length of query: 320
length of database: 328,796
effective HSP length: 74
effective length of query: 246
effective length of database: 237,554
effective search space: 58438284
effective search space used: 58438284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 38 (19.2 bits)