Query         gi|254780427|ref|YP_003064840.1| hypothetical protein CLIBASIA_01560 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 171
No_of_seqs    112 out of 1735
Neff          7.0 
Searched_HMMs 39220
Date          Sun May 29 19:58:01 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780427.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK00016 putative metalloprote 100.0       0       0  300.1  18.7  153   10-170     1-157 (159)
  2 COG0319 Predicted metal-depend 100.0       0       0  294.1  17.0  152   10-171     2-153 (153)
  3 PRK13963 unkown domain/putativ 100.0       0       0  290.1  16.1  125   34-169   133-258 (258)
  4 TIGR00043 TIGR00043 conserved  100.0       0       0  294.2  11.9  109   55-163     1-123 (123)
  5 pfam02130 UPF0054 Uncharacteri 100.0 1.7E-40 4.2E-45  254.2  16.4  110   54-163    31-141 (141)
  6 pfam11350 DUF3152 Protein of u  72.9     5.2 0.00013   20.3   3.7   97   53-168    81-186 (189)
  7 cd04268 ZnMc_MMP_like Zinc-dep  71.3     5.1 0.00013   20.3   3.4   44   94-145    70-113 (165)
  8 cd04276 ZnMc_MMP_like_2 Zinc-d  69.1     9.5 0.00024   18.8   4.9   67   78-144    59-134 (197)
  9 COG5149 TOA1 Transcription ini  68.0       3 7.8E-05   21.6   1.7   27   62-88     30-56  (293)
 10 TIGR00232 tktlase_bact transke  66.7     3.2 8.1E-05   21.5   1.6   13  129-141    65-77  (675)
 11 pfam06262 DUF1025 Domain of un  64.2     6.9 0.00018   19.6   2.9   41  103-144    50-90  (96)
 12 smart00235 ZnMc Zinc-dependent  59.5     4.4 0.00011   20.7   1.2   17  129-145    89-105 (140)
 13 TIGR01120 rpiB ribose 5-phosph  55.6     7.1 0.00018   19.5   1.7   38   57-113    80-117 (143)
 14 cd04281 ZnMc_BMP1_TLD Zinc-dep  53.0     7.2 0.00018   19.5   1.4   17  128-144    89-105 (200)
 15 cd00203 ZnMc Zinc-dependent me  50.9     9.7 0.00025   18.7   1.8   21  125-145    95-115 (167)
 16 cd04280 ZnMc_astacin_like Zinc  50.7     8.9 0.00023   18.9   1.6   54   77-145    38-93  (180)
 17 cd04283 ZnMc_hatching_enzyme Z  49.7     8.9 0.00023   18.9   1.4   38  107-144    55-95  (182)
 18 cd04282 ZnMc_meprin Zinc-depen  49.0      10 0.00027   18.5   1.7   57   73-144    80-138 (230)
 19 cd04327 ZnMc_MMP_like_3 Zinc-d  48.8     5.7 0.00014   20.1   0.3   23  123-145    89-111 (198)
 20 pfam01400 Astacin Astacin (Pep  46.6     9.5 0.00024   18.8   1.2   17  128-144    82-98  (192)
 21 cd04278 ZnMc_MMP Zinc-dependen  46.3      15 0.00039   17.6   2.2  108   29-152    24-132 (157)
 22 pfam01457 Peptidase_M8 Leishma  45.4      16  0.0004   17.5   2.1   41   96-143   217-257 (569)
 23 pfam00413 Peptidase_M10 Matrix  43.2      27 0.00069   16.1   4.2  107   30-151    25-131 (158)
 24 smart00731 SprT SprT homologue  42.0      28 0.00072   16.0   7.2   81   65-151     5-88  (146)
 25 pfam04450 BSP Plant Basic Secr  36.7      34 0.00087   15.5   5.7   62  102-165    72-133 (200)
 26 KOG3714 consensus               32.0      17 0.00043   17.3   0.6   40  106-145   136-178 (411)
 27 KOG4584 consensus               30.9      38 0.00097   15.3   2.2   24  146-169    84-107 (348)
 28 cd00770 SerRS_core Seryl-tRNA   30.2      24 0.00062   16.4   1.1   51  118-170   137-199 (297)
 29 PTZ00337 surface protease GP63  29.6      28  0.0007   16.1   1.3   40   97-145   209-248 (567)
 30 COG0021 TktA Transketolase [Ca  29.2      46  0.0012   14.8   2.7   18   65-82    224-242 (663)
 31 pfam00587 tRNA-synt_2b tRNA sy  28.5      44  0.0011   14.9   2.2   33  136-170   113-145 (170)
 32 pfam07759 DUF1615 Protein of u  24.8      55  0.0014   14.3   2.6   72   68-144    98-177 (318)
 33 KOG3618 consensus               24.4      48  0.0012   14.7   1.8   24  117-140   221-244 (1318)
 34 TIGR03006 pepcterm_polyde poly  24.4      56  0.0014   14.3   2.5   55   98-165    52-111 (274)
 35 PRK05431 seryl-tRNA synthetase  21.5      64  0.0016   14.0   2.6   32  137-170   284-317 (422)
 36 PRK00912 ribonuclease P protei  20.4      68  0.0017   13.8   4.4   37   56-92     63-118 (237)
 37 pfam08328 ASL_C Adenylosuccina  20.2      43  0.0011   15.0   0.9   13  157-169    61-73  (115)

No 1  
>PRK00016 putative metalloprotease; Provisional
Probab=100.00  E-value=0  Score=300.11  Aligned_cols=153  Identities=42%  Similarity=0.647  Sum_probs=126.7

Q ss_pred             CEEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf             30588885485211113525799999999999974322014667438999985779999999998504898515663255
Q gi|254780427|r   10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA   89 (171)
Q Consensus        10 ~i~I~i~ie~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSFP~~   89 (171)
                      +|+|++.++...|...     ..+.+. ..+...+..  ......+||||.|||+++|++||++||++|+||||||||+.
T Consensus         1 ~m~i~i~~e~~~~~~~-----~~~~~~-~~~~~~~~~--~~~~~~~Elsi~~vd~~~i~~LN~~yr~kd~pTDVLSFp~~   72 (159)
T PRK00016          1 ILDIEIANETGQVSEE-----QFEKWL-ELLLFALDK--LGVQPEAELSIRLVDNAEIRELNLEYRGKDKPTDVLSFPME   72 (159)
T ss_pred             CEEEEEECCCCCCCHH-----HHHHHH-HHHHHHHHH--CCCCCCEEEEEEEECHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf             9059974577999768-----999999-999999997--59998817999998989999999999589999867874065


Q ss_pred             CCCC----CCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             6677----765653002046518888744666189899999999999899863888998899999999999999986888
Q gi|254780427|r   90 FASS----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN  165 (171)
Q Consensus        90 ~~~~----~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~~~~M~~~E~~iL~~l~i~  165 (171)
                      ....    ...+..+|||||||+++|.+||+++++++.+|++||+|||+|||+||||.+++++++|+++|+++|+++||+
T Consensus        73 ~~~~~~~~~~~~~~~LGDI~Is~e~i~~eA~e~~~s~~~el~~l~iHG~LHLlGYDH~~~~~~~~M~~~E~~iL~~lgi~  152 (159)
T PRK00016         73 EEPELEEPPGEEPPLLGDIVICPEVAEEQAEEQGHSLEAELAHLTVHGILHLLGYDHIEDEEAEEMEALEEEILAAFGLP  152 (159)
T ss_pred             CCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             66554445566765023489769999989998199999999999999999871788798689999999999999976999


Q ss_pred             CCCCC
Q ss_conf             86447
Q gi|254780427|r  166 DPYEV  170 (171)
Q Consensus       166 ~PY~~  170 (171)
                      |||-.
T Consensus       153 ~py~~  157 (159)
T PRK00016        153 DPYIA  157 (159)
T ss_pred             CCCCC
T ss_conf             98867


No 2  
>COG0319 Predicted metal-dependent hydrolase [General function prediction only]
Probab=100.00  E-value=0  Score=294.08  Aligned_cols=152  Identities=39%  Similarity=0.612  Sum_probs=126.0

Q ss_pred             CEEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf             30588885485211113525799999999999974322014667438999985779999999998504898515663255
Q gi|254780427|r   10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA   89 (171)
Q Consensus        10 ~i~I~i~ie~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSFP~~   89 (171)
                      +++|++..++  |.....    ....+.+++..++....   .+..|+||+|||+++|++||++||++|+||||||||+.
T Consensus         2 ~~~i~~~~~~--~~~~~~----~~~~~~~~~~~~l~~~~---~~~~elsv~~vdd~ei~eLN~~yR~kD~pTDVLSFp~~   72 (153)
T COG0319           2 MMDIEVSDED--GQVRLP----ELKQFEEWLAAALKPEK---ISTAELSVVLVDDAEIRELNLEYRGKDKPTDVLSFPYN   72 (153)
T ss_pred             CCCEEECCCC--CCCCCH----HHHHHHHHHHHHHHHCC---CCCCEEEEEEECHHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf             7530000277--763620----68999999999986504---88726899995779999999998089988745770588


Q ss_pred             CCCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             66777656530020465188887446661898999999999998998638889988999999999999999868888644
Q gi|254780427|r   90 FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE  169 (171)
Q Consensus        90 ~~~~~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~~~~M~~~E~~iL~~l~i~~PY~  169 (171)
                      +... ...+.+|||||||+++|.+||.++|+|+++|++||+|||+|||+||||.+++++++|+..|++||..+|+++||.
T Consensus        73 e~~~-~~~~~~LGDIvI~~~~~~~qA~e~g~s~~~e~~~l~vHG~LHLlGYDH~~~~e~~~M~~le~~iL~~l~~~~~~~  151 (153)
T COG0319          73 EPGE-AGEPPLLGDIVICPEVAEEQAKEQGHSLERELAHLTIHGILHLLGYDHEEDEEEEEMEELEEEILAALGLSDPYL  151 (153)
T ss_pred             CCCC-CCCCCCCEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             9877-777766500687589999999980998999999999999999716889992589999999999999828775454


Q ss_pred             CC
Q ss_conf             79
Q gi|254780427|r  170 VD  171 (171)
Q Consensus       170 ~~  171 (171)
                      .+
T Consensus       152 ~~  153 (153)
T COG0319         152 TA  153 (153)
T ss_pred             CC
T ss_conf             79


No 3  
>PRK13963 unkown domain/putative metalloprotease fusion protein; Provisional
Probab=100.00  E-value=0  Score=290.14  Aligned_cols=125  Identities=38%  Similarity=0.583  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHEEEEEHHHHHH
Q ss_conf             99999999974322014667438999985779999999998504898515663255667776565300204651888874
Q gi|254780427|r   34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI  113 (171)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSFP~~~~~~~~~~~~~LGDIvIs~~~i~~  113 (171)
                      ..+.+|+...+.       ...||+|+|||.+++|.||++||+||+||||||||+.+.+.    ...+||||||++++.+
T Consensus       133 ~~~~~W~~~al~-------~daelTvR~Vd~~E~r~LN~~YRgKDypTNVLSFp~~e~~~----~pllGDIVIC~pVV~r  201 (258)
T PRK13963        133 KLIAEWIEPALF-------ADAQLTVRFVGEEEGRTLNHGYRHKDYATNVLTFAYGEEPD----GPVVGDLVLCCPVVEK  201 (258)
T ss_pred             HHHHHHHHHHHC-------CCCEEEEEEECHHHHHHHHHHHCCCCCCCCEEEECCCCCCC----CCCEEEEEECHHHHHH
T ss_conf             999999999856-------79779999858599999999864999898457523888889----9853338962899999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             4666189899999999999899863888998-8999999999999999868888644
Q gi|254780427|r  114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE  169 (171)
Q Consensus       114 eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~-~~~~~~M~~~E~~iL~~l~i~~PY~  169 (171)
                      ||+++++++.+|++||+|||+|||+||||+. +.+++.|+.+|++||+++||+|||+
T Consensus       202 EA~EQgKsl~~H~AHLvVHG~LHLLGYDHe~~d~eA~~ME~lEi~iL~~LGi~nPYk  258 (258)
T PRK13963        202 EAREQGKPLVAHYAHLLVHGALHAQGYDHETDDEDAAEMEALETDILAKLGFPNPYR  258 (258)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             999848999999999999999996368888887999999999999999759999999


No 4  
>TIGR00043 TIGR00043 conserved hypothetical protein TIGR00043; InterPro: IPR002036   These, as yet, uncharacterised proteins are of 17 to 21 kDa. They contain a conserved region with three histidines at the C terminus.   The crystal structure of the protein from the hyperthermophilic bacteria Aquifex aeolicus has been determined. The overall fold consists of one central alpha-helix surrounded by a four-stranded beta-sheet and four other alpha-helices. Structure-based homology analysis reveals a good resemblance to the metal-dependent proteinases such as collagenases and gelatinases. However, experimental tests for collagenase and gelatinase-type function show no detectable activity under standard assay conditions ..
Probab=100.00  E-value=0  Score=294.22  Aligned_cols=109  Identities=47%  Similarity=0.758  Sum_probs=101.2

Q ss_pred             EEEEEEEECHHHHHHHHHHHHHCCCCCCEEEECCCCCCC----------CCCCC----CCHHEEEEEHHHHHHHHHHHCC
Q ss_conf             389999857799999999985048985156632556677----------76565----3002046518888744666189
Q gi|254780427|r   55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS----------DGCSS----LMLGDIVLAYEIIEIEANVLGK  120 (171)
Q Consensus        55 ~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSFP~~~~~~----------~~~~~----~~LGDIvIs~~~i~~eA~~~~~  120 (171)
                      ++|||+||||++||+||++||++|+||||||||+.+...          ....+    ..+||||||+++|.+||++||+
T Consensus         1 ~~~s~~f~D~~~i~~lN~~yR~~D~pTDVlSFp~~~~~~~~~~Ed~~~~~~~~~~def~~lGDivis~e~~~~~A~e~~~   80 (123)
T TIGR00043         1 IELSLLFVDDEEIQELNREYRDKDYPTDVLSFPYEEEEPFLEDEDEPDAGGFPEKDEFEVLGDIVISLEVAKEQAKEYGH   80 (123)
T ss_pred             CEEEEEEECCHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHCCC
T ss_conf             91368875748899998997157877743205767678888776643446787310245431122046899999987289


Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             8999999999998998638889988999999999999999868
Q gi|254780427|r  121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG  163 (171)
Q Consensus       121 ~~~~e~~~l~iHG~LHLlGydH~~~~~~~~M~~~E~~iL~~l~  163 (171)
                      ++.+||+||+|||+||||||||++++++++|+.+|.+||+.+|
T Consensus        81 ~~~~El~~l~vHG~LHLlGYDH~~~~e~~~M~~~e~~~L~~~g  123 (123)
T TIGR00043        81 SFERELAHLTVHGLLHLLGYDHEEEDEEKEMFALEEEILALLG  123 (123)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999998568999881789999999999998509


No 5  
>pfam02130 UPF0054 Uncharacterized protein family UPF0054.
Probab=100.00  E-value=1.7e-40  Score=254.20  Aligned_cols=110  Identities=50%  Similarity=0.774  Sum_probs=101.5

Q ss_pred             CEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC-CCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             4389999857799999999985048985156632556677765-653002046518888744666189899999999999
Q gi|254780427|r   54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC-SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH  132 (171)
Q Consensus        54 ~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSFP~~~~~~~~~-~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iH  132 (171)
                      .++|+|.|||+++|++||++||++|+||||||||+++...... ...+||||+||+++|.+||.++++++.+|++++++|
T Consensus        31 ~~~l~i~~~~~~~~~~LN~~~r~kd~~TDVLSFp~~~~~~~~~~~~~~lGdI~is~~~i~~~a~~~~~~~~~e~~~l~iH  110 (141)
T pfam02130        31 DFELSILFVDDEEIRELNREYRGKDKPTDVLSFPMDEPEEGDEPLLLLLGDIVISPETAAREAKEYGHSLERELAHLLVH  110 (141)
T ss_pred             CEEEEEEEECHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             95999999888999999999958999875577535567655667776315899819999999999386399999999999


Q ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             8998638889988999999999999999868
Q gi|254780427|r  133 GFLHLLGYDHVDDKDACVMEGLERSILEDLG  163 (171)
Q Consensus       133 G~LHLlGydH~~~~~~~~M~~~E~~iL~~l~  163 (171)
                      |+|||+||||+++.++++|+.+|+++|+.+|
T Consensus       111 G~LHLlGyDH~~~~~~~~M~~~E~~il~~~~  141 (141)
T pfam02130       111 GLLHLLGYDHEEDEEAEEMEALEEEILAKLG  141 (141)
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             9999827888986899999999999999666


No 6  
>pfam11350 DUF3152 Protein of unknown function (DUF3152). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=72.92  E-value=5.2  Score=20.28  Aligned_cols=97  Identities=18%  Similarity=0.139  Sum_probs=64.2

Q ss_pred             CCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             74389999857799999999985048985156632556677765653002046518888744666189899999999999
Q gi|254780427|r   53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH  132 (171)
Q Consensus        53 ~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSFP~~~~~~~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iH  132 (171)
                      ....+.|.|++-....+|-.   +-+  |+.-           .....-+.++|...+=.+-|..++-.+..+=.+++=|
T Consensus        81 g~~Df~i~Lasp~Tt~~lC~---gl~--t~~e-----------~SC~~~~~VviN~~RW~~ga~~f~gdl~~YR~y~INH  144 (189)
T pfam11350        81 GAPDFRISLASPGTTRELCA---GLD--TGGE-----------VSCYNGDRVVINEARWVRGAPPFEGDLGSYRQYVINH  144 (189)
T ss_pred             CCCCEEEEECCCCCHHHCCC---CCC--CCCE-----------EEECCCCEEEEEHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf             99988999778660743255---767--6877-----------8746999799878996536865365899999998703


Q ss_pred             HHHHHCCCCCCCH----HHHHHHHHHHHHHHHHCC-----CCCCC
Q ss_conf             8998638889988----999999999999999868-----88864
Q gi|254780427|r  133 GFLHLLGYDHVDD----KDACVMEGLERSILEDLG-----INDPY  168 (171)
Q Consensus       133 G~LHLlGydH~~~----~~~~~M~~~E~~iL~~l~-----i~~PY  168 (171)
                      -+=|-|||.|+.=    .-|-.|.   ++.+..-|     .+|||
T Consensus       145 EVGH~LG~~H~~Cp~~G~~APvMm---QQt~~l~gd~~~C~pN~W  186 (189)
T pfam11350       145 EVGHAIGYGHEPCPKPGELAPVMM---QQTFSLSNDGATCRFNPW  186 (189)
T ss_pred             HHHHHCCCCCCCCCCCCCCCCHHH---HHHHCCCCCCCCEECCCC
T ss_conf             232012557766998998372023---100135898661515889


No 7  
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=71.33  E-value=5.1  Score=20.35  Aligned_cols=44  Identities=20%  Similarity=0.198  Sum_probs=33.7

Q ss_pred             CCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf             7656530020465188887446661898999999999998998638889988
Q gi|254780427|r   94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD  145 (171)
Q Consensus        94 ~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~  145 (171)
                      +......++++.+....+.-        ..+++..+++|=+-|-||..|.-.
T Consensus        70 p~tgeI~~a~v~~~~~~~~~--------~~~~~~~v~~HEvGHtLGL~Hn~~  113 (165)
T cd04268          70 PLTGEILLARVYLYSSFVEY--------SGARLRNTAEHELGHALGLRHNFA  113 (165)
T ss_pred             CCCCEEEEEEEEEECHHHHH--------HHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99841885578762039999--------999999999998763505754453


No 8  
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=69.06  E-value=9.5  Score=18.76  Aligned_cols=67  Identities=18%  Similarity=0.190  Sum_probs=49.8

Q ss_pred             CCCCCEEEECCCCC---------CCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             89851566325566---------77765653002046518888744666189899999999999899863888998
Q gi|254780427|r   78 DKPTNVLSFPTAFA---------SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD  144 (171)
Q Consensus        78 d~~TDVLSFP~~~~---------~~~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~  144 (171)
                      |--.||+.|-....         .++-++..+-+||.+-..++..-...+..-..+-+..+++|-+=|-||..|.=
T Consensus        59 DiRyn~Irw~~s~~~~~ayGps~~dPrTGEIl~a~I~~~~~~~~~~~~~~~~~~~~~lr~~~aHEVGHtLGL~HNf  134 (197)
T cd04276          59 DIRYNVIRWIHSPNGGWAYGPSVVDPRTGEILKADVILYSGFLRQDQLWYEDLLAASLRYLLAHEVGHTLGLRHNF  134 (197)
T ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             7426689996379876666887579998667765788741776547999998999999999998764031653301


No 9  
>COG5149 TOA1 Transcription initiation factor IIA, large chain [Transcription]
Probab=68.03  E-value=3  Score=21.62  Aligned_cols=27  Identities=22%  Similarity=0.299  Sum_probs=25.5

Q ss_pred             ECHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             577999999999850489851566325
Q gi|254780427|r   62 TDSHRIETLNFEYRGIDKPTNVLSFPT   88 (171)
Q Consensus        62 ~dd~~i~~LN~~yr~kd~~TDVLSFP~   88 (171)
                      +||+..|+|-.-|..|=.+|||-+||-
T Consensus        30 vdd~tlrelqnlwq~kl~~t~vatf~w   56 (293)
T COG5149          30 VDDATLRELQNLWQSKLVATDVATFPW   56 (293)
T ss_pred             CCHHHHHHHHHHHHHHHHHHEEEECCH
T ss_conf             648999999999987543202211126


No 10 
>TIGR00232 tktlase_bact transketolase; InterPro: IPR005478     Transketolase (EC 2.2.1.1) (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor.    This group includes two proteins from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. ; GO: 0004802 transketolase activity.
Probab=66.67  E-value=3.2  Score=21.50  Aligned_cols=13  Identities=46%  Similarity=1.035  Sum_probs=8.4

Q ss_pred             HHHHHHHHHCCCC
Q ss_conf             9999899863888
Q gi|254780427|r  129 LIIHGFLHLLGYD  141 (171)
Q Consensus       129 l~iHG~LHLlGyd  141 (171)
                      +++=++|||.|||
T Consensus        65 mLlYSlLHL~GyD   77 (675)
T TIGR00232        65 MLLYSLLHLTGYD   77 (675)
T ss_pred             HHHHHHHHHHCCC
T ss_conf             9999999985036


No 11 
>pfam06262 DUF1025 Domain of unknown function (DUF1025). Family of bacterial protein with undetermined function.
Probab=64.24  E-value=6.9  Score=19.58  Aligned_cols=41  Identities=24%  Similarity=0.218  Sum_probs=33.5

Q ss_pred             EEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             046518888744666189899999999999899863888998
Q gi|254780427|r  103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD  144 (171)
Q Consensus       103 DIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~  144 (171)
                      =|+|=-.-+.+.|.+... +.+.+.+.++|-+-|.+|+|+..
T Consensus        50 ~I~lyR~pi~~~~~~~~e-L~~~V~~tviHEiaH~fG~dd~~   90 (96)
T pfam06262        50 RITLYRRPILDEWRDREE-LGELVRHVVIHEIGHHFGLSDDD   90 (96)
T ss_pred             EEEEEHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             998661689988489999-99999999999988770898889


No 12 
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=59.48  E-value=4.4  Score=20.67  Aligned_cols=17  Identities=29%  Similarity=0.415  Sum_probs=15.4

Q ss_pred             HHHHHHHHHCCCCCCCH
Q ss_conf             99998998638889988
Q gi|254780427|r  129 LIIHGFLHLLGYDHVDD  145 (171)
Q Consensus       129 l~iHG~LHLlGydH~~~  145 (171)
                      .++|=++|.||+.|+..
T Consensus        89 ~i~HEigHaLGl~He~~  105 (140)
T smart00235       89 VAAHELGHALGLYHEQS  105 (140)
T ss_pred             HHHHHHHHHCCCCCCCC
T ss_conf             24553453426655457


No 13 
>TIGR01120 rpiB ribose 5-phosphate isomerase B; InterPro: IPR004785   Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology . This entry represents the RpiB enzyme.; GO: 0004751 ribose-5-phosphate isomerase activity, 0006098 pentose-phosphate shunt.
Probab=55.61  E-value=7.1  Score=19.49  Aligned_cols=38  Identities=16%  Similarity=0.236  Sum_probs=29.2

Q ss_pred             EEEEEECHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHEEEEEHHHHHH
Q ss_conf             999985779999999998504898515663255667776565300204651888874
Q gi|254780427|r   57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI  113 (171)
Q Consensus        57 isi~l~dd~~i~~LN~~yr~kd~~TDVLSFP~~~~~~~~~~~~~LGDIvIs~~~i~~  113 (171)
                      |-=.+|.|++|.+|-+++    -.||||.|               |+=|+..+.+..
T Consensus        80 IRAalC~~~YmA~msRlH----NdaNVLcl---------------Gerv~G~elA~s  117 (143)
T TIGR01120        80 IRAALCLDEYMAKMSRLH----NDANVLCL---------------GERVVGVELAKS  117 (143)
T ss_pred             CEEEECCCHHHHHHHHHH----HHHHHHHH---------------CCEEHHHHHHHH
T ss_conf             056632652467863321----00220321---------------574015789999


No 14 
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.
Probab=52.98  E-value=7.2  Score=19.46  Aligned_cols=17  Identities=24%  Similarity=0.628  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHCCCCCCC
Q ss_conf             99999899863888998
Q gi|254780427|r  128 HLIIHGFLHLLGYDHVD  144 (171)
Q Consensus       128 ~l~iHG~LHLlGydH~~  144 (171)
                      -.++|=++|.||+-|+.
T Consensus        89 G~i~HEl~HalGf~HEq  105 (200)
T cd04281          89 GIVVHELGHVIGFWHEH  105 (200)
T ss_pred             CCHHHHHHHHHCCCCCC
T ss_conf             30299998875465543


No 15 
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=50.86  E-value=9.7  Score=18.70  Aligned_cols=21  Identities=33%  Similarity=0.444  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHCCCCCCCH
Q ss_conf             999999998998638889988
Q gi|254780427|r  125 HLVHLIIHGFLHLLGYDHVDD  145 (171)
Q Consensus       125 e~~~l~iHG~LHLlGydH~~~  145 (171)
                      +....++|=+.|.||+.|+..
T Consensus        95 ~~~gti~HElgHaLGf~He~s  115 (167)
T cd00203          95 EGAQTIAHELGHALGFYHDHD  115 (167)
T ss_pred             CCCCHHHHHHHHHHCCCCCCC
T ss_conf             554248999999848875556


No 16 
>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.
Probab=50.72  E-value=8.9  Score=18.92  Aligned_cols=54  Identities=13%  Similarity=0.252  Sum_probs=30.1

Q ss_pred             CCCCCCEEEECCCCCCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHCCCCCCCH
Q ss_conf             4898515663255667776565300204651888874466618989999--99999998998638889988
Q gi|254780427|r   77 IDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH--LVHLIIHGFLHLLGYDHVDD  145 (171)
Q Consensus        77 kd~~TDVLSFP~~~~~~~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e--~~~l~iHG~LHLlGydH~~~  145 (171)
                      ....+|-|.|-..    .       |    |...+-++.-.+..++...  -.-.++|=++|.||+-|+..
T Consensus        38 r~~~~~yi~f~~~----~-------g----C~S~vG~~~g~q~isl~~~C~~~g~i~HEl~HalGf~HE~~   93 (180)
T cd04280          38 RTTEKDYIRIVKG----S-------G----CWSYVGRVGGRQVVSLGSGCFSLGTIVHELMHALGFYHEQS   93 (180)
T ss_pred             CCCCCCEEEEECC----C-------C----EEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf             8998758999659----9-------7----13615701882368847886867633999998745655434


No 17 
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related  metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different  substrate specificities and cooperatively digest the chorion.
Probab=49.67  E-value=8.9  Score=18.94  Aligned_cols=38  Identities=21%  Similarity=0.376  Sum_probs=23.4

Q ss_pred             EHHHHHHHHHHHCCCHHHH---HHHHHHHHHHHHCCCCCCC
Q ss_conf             1888874466618989999---9999999899863888998
Q gi|254780427|r  107 AYEIIEIEANVLGKEFENH---LVHLIIHGFLHLLGYDHVD  144 (171)
Q Consensus       107 s~~~i~~eA~~~~~~~~~e---~~~l~iHG~LHLlGydH~~  144 (171)
                      |+..|-++.-.+..++...   ..-.++|=++|.||+-|+.
T Consensus        55 C~S~vGr~gg~Q~isl~~~gC~~~g~i~HEl~HalGf~HEq   95 (182)
T cd04283          55 CWSYIGRQGGRQTVSLQKQGCMYKGIIQHELLHALGFYHEQ   95 (182)
T ss_pred             EEECCCEECCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf             85405710981248868999787672078888884555544


No 18 
>cd04282 ZnMc_meprin Zinc-dependent metalloprotease, meprin_like subfamily. Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells.
Probab=48.96  E-value=10  Score=18.52  Aligned_cols=57  Identities=18%  Similarity=0.342  Sum_probs=34.7

Q ss_pred             HHHHCCCCCCEEEECCCCCCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHH--HHHHHHHHHHHCCCCCCC
Q ss_conf             985048985156632556677765653002046518888744666189899999--999999899863888998
Q gi|254780427|r   73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL--VHLIIHGFLHLLGYDHVD  144 (171)
Q Consensus        73 ~yr~kd~~TDVLSFP~~~~~~~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~--~~l~iHG~LHLlGydH~~  144 (171)
                      +|+-....+|-+.|-..    .       |    |+..|-++.-.+..++..-.  .-.++|-++|.||+-|+.
T Consensus        80 rF~~r~~e~~yi~~~~~----~-------G----C~S~VG~~gg~Q~vslg~gC~~~G~i~HEl~HaLGf~HEq  138 (230)
T cd04282          80 DFKPYEGESNYIFFFKG----S-------G----CWSMVGDQQGGQNLSIGAGCDYKATVEHEFLHALGFYHEQ  138 (230)
T ss_pred             EEEECCCCCCEEEEECC----C-------C----CCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf             14867898755999569----9-------5----1142265388056650788787766799999885566542


No 19 
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=48.78  E-value=5.7  Score=20.06  Aligned_cols=23  Identities=26%  Similarity=0.600  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf             99999999998998638889988
Q gi|254780427|r  123 ENHLVHLIIHGFLHLLGYDHVDD  145 (171)
Q Consensus       123 ~~e~~~l~iHG~LHLlGydH~~~  145 (171)
                      ..++...++|-+.|.||+.|+..
T Consensus        89 ~~~~~~~~~he~~h~~g~~he~~  111 (198)
T cd04327          89 DPEFSRVVLHEFGHALGFIHEHQ  111 (198)
T ss_pred             CCCCCEEHHHHHHHHHCCCCCCC
T ss_conf             53300100577676642600223


No 20 
>pfam01400 Astacin Astacin (Peptidase family M12A). The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis. Members of this family contain two conserved disulphide bridges, these are joined 1-4 and 2-3. Members of this family have an amino terminal propeptide which is cleaved to give the active protease domain. All other linked domains are found to the carboxyl terminus of this domain. This family includes: Astacin, a digestive enzyme from Crayfish. Meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain. Proteins involved in morphogenesis, and Tolloid from drosophila.
Probab=46.58  E-value=9.5  Score=18.77  Aligned_cols=17  Identities=35%  Similarity=0.620  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHCCCCCCC
Q ss_conf             99999899863888998
Q gi|254780427|r  128 HLIIHGFLHLLGYDHVD  144 (171)
Q Consensus       128 ~l~iHG~LHLlGydH~~  144 (171)
                      -.++|=++|.||+=|+.
T Consensus        82 g~i~HEl~HaLGf~HEh   98 (192)
T pfam01400        82 GIIVHELGHALGFWHEQ   98 (192)
T ss_pred             CCCHHHHHHHHCCCCCC
T ss_conf             70178888884555544


No 21 
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=46.28  E-value=15  Score=17.58  Aligned_cols=108  Identities=16%  Similarity=0.071  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHEEEEE
Q ss_conf             5799999999999974322-014667438999985779999999998504898515663255667776565300204651
Q gi|254780427|r   29 RTLCEVVFAKAVSNLISKG-YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLA  107 (171)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSFP~~~~~~~~~~~~~LGDIvIs  107 (171)
                      ......+|..|-...-... .........|.|.|.....     ...-.-|++.+||.+.....       ..-|+|-+.
T Consensus        24 r~~i~~Af~~Ws~v~~l~F~ev~~~~~AdI~i~f~~~~h-----~d~~~fDG~gg~lahA~~p~-------~~~G~ihfd   91 (157)
T cd04278          24 RRAIARAFRVWSDVTPLTFREVTSGQEADIRISFARGNH-----GDGYPFDGPGGTLAHAFFPG-------GIGGDIHFD   91 (157)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEECCCC-----CCCCCCCCCCCEEEEEECCC-------CCCCEEEEC
T ss_conf             999999999986647855598158887878999866766-----89888578888689875688-------866418877


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             888874466618989999999999989986388899889999999
Q gi|254780427|r  108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME  152 (171)
Q Consensus       108 ~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~~~~M~  152 (171)
                      .+--..  .. +-.-..-|..+++|-+=|.||-+|.... .-.|.
T Consensus        92 ~~e~w~--~~-~~~~~~~l~~va~HEIGHaLGL~Hs~~~-~siM~  132 (157)
T cd04278          92 DDEQWT--LG-SDSGGTDLFSVAAHEIGHALGLGHSSDP-DSIMY  132 (157)
T ss_pred             CCCCCC--CC-CCCCCCCHHHHHHHHHHHHCCCCCCCCC-CCEEC
T ss_conf             776621--26-7887601899999875654068888999-75333


No 22 
>pfam01457 Peptidase_M8 Leishmanolysin.
Probab=45.43  E-value=16  Score=17.53  Aligned_cols=41  Identities=17%  Similarity=0.261  Sum_probs=31.2

Q ss_pred             CCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             565300204651888874466618989999999999989986388899
Q gi|254780427|r   96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV  143 (171)
Q Consensus        96 ~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~  143 (171)
                      ......|-|=|++..+....       .+...+.++|-+.|.|||+..
T Consensus       217 dgRP~vG~iN~~P~~i~~~~-------~~~~vrv~aHEiaHALGFs~~  257 (569)
T pfam01457       217 DGRPAVGVINIPAANITSRY-------DQLVTRVVTHEIAHALGFSVT  257 (569)
T ss_pred             CCCEEEEEEEECHHHCCCCC-------CCEEEEHHHHHHHHHHCCCHH
T ss_conf             89805899841877764135-------541423898888888635898


No 23 
>pfam00413 Peptidase_M10 Matrixin. The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis.
Probab=43.15  E-value=27  Score=16.15  Aligned_cols=107  Identities=19%  Similarity=0.090  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHEEEEEHH
Q ss_conf             79999999999997432201466743899998577999999999850489851566325566777656530020465188
Q gi|254780427|r   30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYE  109 (171)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSFP~~~~~~~~~~~~~LGDIvIs~~  109 (171)
                      ..+..+|..|-...-............|.|.|.....-     ..-.-|++-.||.+.+..   ..    .-|||-+-.+
T Consensus        25 ~~i~~Af~~Ws~v~~l~F~ev~~~~adI~i~F~~~~h~-----d~~~fDg~gg~laha~~P---~~----~~G~ihfd~~   92 (158)
T pfam00413        25 RAIRRAFKVWSEVTPLTFTEVPEGTADIMIGFGRGEHG-----DGYPFDGPGGVLAHAFFP---GP----IGGDIHFDDD   92 (158)
T ss_pred             HHHHHHHHHHHHHCCCCEEECCCCCCCEEEEECCCCCC-----CCCCCCCCCCEEEECCCC---CC----CCCEEEECCC
T ss_conf             99999999998636854797778987789994467679-----988867989867751269---86----5733896578


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             887446661898999999999998998638889988999999
Q gi|254780427|r  110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM  151 (171)
Q Consensus       110 ~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~~~~M  151 (171)
                      .-..  .....+....+..+++|-+=|.||-+|..... -.|
T Consensus        93 e~w~--~~~~~~~g~~l~~va~HEIGHaLGL~Hs~~~~-siM  131 (158)
T pfam00413        93 EQWT--VGNESPEGTNLFLVAAHEIGHALGLGHSSDPD-AIM  131 (158)
T ss_pred             CCCC--CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC-CEE
T ss_conf             6530--58987665115566545402002668899986-677


No 24 
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=42.04  E-value=28  Score=16.04  Aligned_cols=81  Identities=15%  Similarity=0.171  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCC--HHEEEEEHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999999999850489851566325566777656530--0204651888874466-6189899999999999899863888
Q gi|254780427|r   65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM--LGDIVLAYEIIEIEAN-VLGKEFENHLVHLIIHGFLHLLGYD  141 (171)
Q Consensus        65 ~~i~~LN~~yr~kd~~TDVLSFP~~~~~~~~~~~~~--LGDIvIs~~~i~~eA~-~~~~~~~~e~~~l~iHG~LHLlGyd  141 (171)
                      +-+.++|.+|.+..-|-.=+.|-.-...  -.+...  -..|-+|+..+..... ....++..|++|+.+|-  .=-|+-
T Consensus         5 ~~~~~~~~~~F~~~f~~~~i~wn~Rl~t--taG~~~~~~~~I~ln~~ll~~~~~~~l~~tl~HElcH~~~~~--~~~~~~   80 (146)
T smart00731        5 QRLEDASLRVFGRKLPHPKVVWNKRLRK--TGGRCLLKSAEIRLNPKLLTENGRDRLRETLLHELCHAALYL--FGRGYG   80 (146)
T ss_pred             HHHHHHHHHHHCCCCCCCEEEECCHHHH--HHHHEECCCCEEEECHHHHHHCCHHHHHHHHHHHHHHHHHHH--HCCCCC
T ss_conf             9999999999589899958998704630--678100569889978999976748899987899999999999--779898


Q ss_pred             CCCHHHHHHH
Q ss_conf             9988999999
Q gi|254780427|r  142 HVDDKDACVM  151 (171)
Q Consensus       142 H~~~~~~~~M  151 (171)
                      |.  ++.+.+
T Consensus        81 Hg--~~fk~~   88 (146)
T smart00731       81 HG--DEWKRW   88 (146)
T ss_pred             CC--HHHHHH
T ss_conf             78--999999


No 25 
>pfam04450 BSP Plant Basic Secretory Protein. These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens.
Probab=36.69  E-value=34  Score=15.55  Aligned_cols=62  Identities=16%  Similarity=0.256  Sum_probs=44.7

Q ss_pred             HEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             2046518888744666189899999999999899863888998899999999999999986888
Q gi|254780427|r  102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN  165 (171)
Q Consensus       102 GDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~~~~M~~~E~~iL~~l~i~  165 (171)
                      -+|.+|+.++..-+.  +.....|+.=++.|.+-|+.-|+-......-.-+.+-+.+=-+.|+.
T Consensus        72 ~eIh~S~~yI~~~~~--~~d~~~Ei~Gvl~HE~~H~~Q~~~~g~~p~~liEGiAD~VRl~ag~~  133 (200)
T pfam04450        72 KEIHLSARYIEGYSA--EGDVKYEVTGVLYHELVHCWQWDGTGRAPGGLIEGIADYVRLKAGYA  133 (200)
T ss_pred             CEEEEEHHHHCCCCC--CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             279973788456666--67478999999998776642037988997358889999999974888


No 26 
>KOG3714 consensus
Probab=31.96  E-value=17  Score=17.30  Aligned_cols=40  Identities=18%  Similarity=0.216  Sum_probs=28.5

Q ss_pred             EEHHHHHHHHHH-HCCCHHHHHH--HHHHHHHHHHCCCCCCCH
Q ss_conf             518888744666-1898999999--999998998638889988
Q gi|254780427|r  106 LAYEIIEIEANV-LGKEFENHLV--HLIIHGFLHLLGYDHVDD  145 (171)
Q Consensus       106 Is~~~i~~eA~~-~~~~~~~e~~--~l~iHG~LHLlGydH~~~  145 (171)
                      -|+..|-+.... +..++-....  -.++|=++|.||+=|+..
T Consensus       136 gC~S~VGr~gg~~q~~sl~~~C~~~G~i~HEl~HaLGf~Hehs  178 (411)
T KOG3714         136 GCYSYVGRRGGGQQLLSLGDGCDRFGTIVHELMHALGFWHEHS  178 (411)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCC
T ss_conf             7313127778865321117874767610566776641310256


No 27 
>KOG4584 consensus
Probab=30.90  E-value=38  Score=15.29  Aligned_cols=24  Identities=29%  Similarity=0.427  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             999999999999999868888644
Q gi|254780427|r  146 KDACVMEGLERSILEDLGINDPYE  169 (171)
Q Consensus       146 ~~~~~M~~~E~~iL~~l~i~~PY~  169 (171)
                      .+...|.+.-+++|..+|+.+||+
T Consensus        84 ~~g~~Ll~lRE~~LrE~gF~Diy~  107 (348)
T KOG4584          84 PLGINLLRLREQILRELGFRDIYK  107 (348)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             504789999999999708963888


No 28 
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate.  Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=30.18  E-value=24  Score=16.39  Aligned_cols=51  Identities=18%  Similarity=0.317  Sum_probs=31.6

Q ss_pred             HCCCHHHHHHHH--HHHHHHHHCCCC----------CCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             189899999999--999899863888----------99889999999999999998688886447
Q gi|254780427|r  118 LGKEFENHLVHL--IIHGFLHLLGYD----------HVDDKDACVMEGLERSILEDLGINDPYEV  170 (171)
Q Consensus       118 ~~~~~~~e~~~l--~iHG~LHLlGyd----------H~~~~~~~~M~~~E~~iL~~l~i~~PY~~  170 (171)
                      ++.-+..|-.-.  =.||++.+-.|+          .+.+++.++|.....++|+.||+  ||++
T Consensus       137 ~s~cfR~Eags~G~d~~GL~RvhqF~kvE~~~~c~pe~s~~~~e~~~~~~e~~l~~L~l--pyrv  199 (297)
T cd00770         137 YSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEESWEELEELISNAEEILQELGL--PYRV  199 (297)
T ss_pred             CCCHHHHCCCCCCCCCCCEEEEEECCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCC--CEEE
T ss_conf             46341320377775555457887211003776168788999999999999999998155--0145


No 29 
>PTZ00337 surface protease GP63; Provisional
Probab=29.64  E-value=28  Score=16.09  Aligned_cols=40  Identities=18%  Similarity=0.228  Sum_probs=29.9

Q ss_pred             CCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf             6530020465188887446661898999999999998998638889988
Q gi|254780427|r   97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD  145 (171)
Q Consensus        97 ~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~  145 (171)
                      .....|=+=|.+.++..         .+...|.++|-+.|.|||+...-
T Consensus       209 gRP~vGv~N~~P~~i~~---------~~~~vRvaaHEiAHALGFs~~~m  248 (567)
T PTZ00337        209 GRPFAAAVNFDPRQIAV---------TNGYVRVAAHELGHALGFARDQF  248 (567)
T ss_pred             CCEEEEEEECCHHHCCC---------CCHHHHHHHHHHHHHHCCCHHHH
T ss_conf             98258997118132234---------40157899999988863688898


No 30 
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=29.20  E-value=46  Score=14.82  Aligned_cols=18  Identities=33%  Similarity=0.329  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHH-CCCCCC
Q ss_conf             999999999850-489851
Q gi|254780427|r   65 HRIETLNFEYRG-IDKPTN   82 (171)
Q Consensus        65 ~~i~~LN~~yr~-kd~~TD   82 (171)
                      +.|.+-=.+=+. .|+||=
T Consensus       224 e~I~~Ai~~Ak~~~dkPtl  242 (663)
T COG0021         224 EAIDKAIEEAKASTDKPTL  242 (663)
T ss_pred             HHHHHHHHHHHHCCCCCEE
T ss_conf             9999999999746799738


No 31 
>pfam00587 tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T). Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases.
Probab=28.53  E-value=44  Score=14.90  Aligned_cols=33  Identities=30%  Similarity=0.612  Sum_probs=21.6

Q ss_pred             HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             86388899889999999999999998688886447
Q gi|254780427|r  136 HLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV  170 (171)
Q Consensus       136 HLlGydH~~~~~~~~M~~~E~~iL~~l~i~~PY~~  170 (171)
                      |+.|-+.+....-.+|...-.++|+.+|+  ||+.
T Consensus       113 ~~~~~~e~s~~~~~e~~~~~~~~~~~lgl--~~~i  145 (170)
T pfam00587       113 EIFGTPEQSEEEDEELLKLAEEILQDLGL--PYRV  145 (170)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHHCCC--CEEE
T ss_conf             99967004299999999999999998799--6799


No 32 
>pfam07759 DUF1615 Protein of unknown function (DUF1615). This is a family of proteins of unknown function expressed by various bacterial species. Some members of this family are thought to be lipoproteins. Another member of this family is thought to be involved in photosynthesis.
Probab=24.84  E-value=55  Score=14.35  Aligned_cols=72  Identities=18%  Similarity=0.225  Sum_probs=43.8

Q ss_pred             HHHHHHHHHCCCCCCEEEECCCCCCCCCCCC-CCHHEEEEEHHHHHHHHHHHCCCHHHHHHHH-------HHHHHHHHCC
Q ss_conf             9999998504898515663255667776565-3002046518888744666189899999999-------9998998638
Q gi|254780427|r   68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSS-LMLGDIVLAYEIIEIEANVLGKEFENHLVHL-------IIHGFLHLLG  139 (171)
Q Consensus        68 ~~LN~~yr~kd~~TDVLSFP~~~~~~~~~~~-~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l-------~iHG~LHLlG  139 (171)
                      ++|+.-|+..=   ..  .|.........++ .-+|-.=+|...++..++.+.......+.+.       +-.|+-||||
T Consensus        98 kel~~ly~d~i---~~--~p~g~~l~g~~NPV~TgGpMQVSI~fAe~h~r~yp~~~~~siR~evftrrGG~yfG~a~LL~  172 (318)
T pfam07759        98 RDLSLLYDDFI---SA--VPLGKTLFGGLNPVTTGGPMQVSIAFAEQHAKGYPYPVDGSIRDEVFTRRGGVYFGIAHLLG  172 (318)
T ss_pred             HHHHHHHHHHH---HH--CCCHHHHHCCCCCCCCCCCCEEEHHHHHHCCCCCCCCCCCCHHHHHHHCCCCEEHHHHHHCC
T ss_conf             89999999999---74--72413453267875547774654699986341589988640899987306760110798807


Q ss_pred             CCCCC
Q ss_conf             88998
Q gi|254780427|r  140 YDHVD  144 (171)
Q Consensus       140 ydH~~  144 (171)
                      |-+.-
T Consensus       173 Ypa~Y  177 (318)
T pfam07759       173 YPADY  177 (318)
T ss_pred             CCCCC
T ss_conf             98888


No 33 
>KOG3618 consensus
Probab=24.44  E-value=48  Score=14.68  Aligned_cols=24  Identities=29%  Similarity=0.421  Sum_probs=17.1

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             618989999999999989986388
Q gi|254780427|r  117 VLGKEFENHLVHLIIHGFLHLLGY  140 (171)
Q Consensus       117 ~~~~~~~~e~~~l~iHG~LHLlGy  140 (171)
                      +.+-+-+.-+.+++.||+.||+|-
T Consensus       221 ~aG~~~~~l~~r~~lH~~vHliGV  244 (1318)
T KOG3618         221 GAGALHWELLSRGLLHGCVHLIGV  244 (1318)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             457244999999998621665556


No 34 
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily; InterPro: IPR014344   Members of this entry belong to the family of polysaccharide deacetylases. All are found in species that encode the PEP-CTERM/exosortase system and are predicted to act in protein sorting in a number of Gram-negative bacteria, they are also found near the gene coding region for the EpsH homologue that is the putative exosortase gene..
Probab=24.43  E-value=56  Score=14.30  Aligned_cols=55  Identities=24%  Similarity=0.305  Sum_probs=44.1

Q ss_pred             CCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC-----CHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             5300204651888874466618989999999999989986388899-----8899999999999999986888
Q gi|254780427|r   98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-----DDKDACVMEGLERSILEDLGIN  165 (171)
Q Consensus        98 ~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~-----~~~~~~~M~~~E~~iL~~l~i~  165 (171)
                      ...||=|+==+|.+.+.-.+.||-+.-|             ||+|+     +.+++..=-.+=.++|+.|+-.
T Consensus        52 FFtLGWvAERyP~LVr~Iv~~GHElASH-------------Gy~H~Rv~~qtp~~Fr~Di~rsK~lLEDl~G~  111 (274)
T TIGR03006        52 FFTLGWVAERYPELVRRIVAAGHELASH-------------GYGHERVTTQTPEEFRADIRRSKKLLEDLSGQ  111 (274)
T ss_pred             EEECCHHHHCCHHHHHHHHHCCCEEEEC-------------CCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             4240347540528899999719826532-------------41035554089879999999999997257886


No 35 
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=21.47  E-value=64  Score=13.96  Aligned_cols=32  Identities=25%  Similarity=0.490  Sum_probs=22.9

Q ss_pred             HCCCCCCC--HHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             63888998--89999999999999998688886447
Q gi|254780427|r  137 LLGYDHVD--DKDACVMEGLERSILEDLGINDPYEV  170 (171)
Q Consensus       137 LlGydH~~--~~~~~~M~~~E~~iL~~l~i~~PY~~  170 (171)
                      +..|-|.+  .+..+.|...+.++|..||+  ||++
T Consensus       284 ~f~~~~pe~S~~~~e~~~~~~e~i~~~L~l--pyrv  317 (422)
T PRK05431        284 LVKFTKPEDSYAELEELTGNAEEILQKLEL--PYRV  317 (422)
T ss_pred             EEEECCHHHHHHHHHHHHHHHHHHHHHCCC--CCCC
T ss_conf             335358677999999999999999987598--5023


No 36 
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=20.39  E-value=68  Score=13.82  Aligned_cols=37  Identities=14%  Similarity=0.237  Sum_probs=27.5

Q ss_pred             EEEEEEECHHHHHHHHHHHHH-------------------CCCCCCEEEECCCCCC
Q ss_conf             899998577999999999850-------------------4898515663255667
Q gi|254780427|r   56 ELSLVFTDSHRIETLNFEYRG-------------------IDKPTNVLSFPTAFAS   92 (171)
Q Consensus        56 eisi~l~dd~~i~~LN~~yr~-------------------kd~~TDVLSFP~~~~~   92 (171)
                      -+.|...|...++.|=.+||+                   .+---||||.|.....
T Consensus        63 gvei~~~dp~~~~~l~~k~r~~~dIv~V~g~~~~~nr~A~e~~~VDIL~~p~~~r~  118 (237)
T PRK00912         63 GVEIVEENPSKLRGLVGKFRKKVDVLIVHGGDEKVNRAACENPRVDILNHPYLNRK  118 (237)
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEECCCCCCC
T ss_conf             67997249788778899885248789994787288999872689878846543468


No 37 
>pfam08328 ASL_C Adenylosuccinate lyase C-terminal. This domain is found at the C-terminus of adenylosuccinate lyase(ASL; PurB in E. coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain pfam00206. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate.
Probab=20.21  E-value=43  Score=14.96  Aligned_cols=13  Identities=38%  Similarity=0.984  Sum_probs=8.0

Q ss_pred             HHHHHCCCCCCCC
Q ss_conf             9999868888644
Q gi|254780427|r  157 SILEDLGINDPYE  169 (171)
Q Consensus       157 ~iL~~l~i~~PY~  169 (171)
                      -+|.+.|++|||+
T Consensus        61 tiLR~~g~~~~YE   73 (115)
T pfam08328        61 TVMRRYGIPNPYE   73 (115)
T ss_pred             HHHHHCCCCCHHH
T ss_conf             9999819998999


Done!