Query gi|254780427|ref|YP_003064840.1| hypothetical protein CLIBASIA_01560 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 171
No_of_seqs 112 out of 1735
Neff 7.0
Searched_HMMs 23785
Date Mon May 30 10:57:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780427.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xm5_A Hypothetical UPF0054 pr 100.0 0 0 292.4 17.7 153 6-171 1-153 (155)
2 1xax_A Hypothetical UPF0054 pr 100.0 0 0 290.3 16.4 153 6-171 1-153 (154)
3 1oz9_A Hypothetical protein AQ 100.0 1.8E-41 1.4E-45 258.7 17.2 146 1-163 1-147 (150)
4 1tvi_A Hypothetical UPF0054 pr 100.0 3E-42 0 263.2 11.5 112 53-171 52-167 (172)
5 1lml_A Leishmanolysin; metallo 79.5 0.75 3.2E-05 23.9 2.0 40 96-142 136-175 (478)
6 1xfi_A Unknown protein; struct 52.9 2.5 0.00011 20.9 0.2 54 111-170 69-122 (367)
7 3edh_A Bone morphogenetic prot 49.1 5.8 0.00025 18.7 1.5 18 128-145 89-106 (201)
8 3lqb_A Hatching enzyme, LOC792 46.6 7 0.00029 18.3 1.6 19 127-145 94-112 (199)
9 3lmc_A Peptidase, zinc-depende 42.5 17 0.0007 16.1 3.2 43 102-144 116-161 (210)
10 3lq0_A Proastacin; metallopept 41.9 6.8 0.00029 18.3 1.0 19 127-145 121-139 (235)
11 2x7m_A Archaemetzincin; metall 34.8 22 0.00093 15.4 3.2 40 102-144 118-157 (195)
12 1hv5_A Stromelysin 3; inhibiti 34.0 21 0.00089 15.5 2.5 42 101-146 92-133 (165)
13 1cge_A Fibroblast collagenase; 31.4 25 0.001 15.1 2.5 42 101-147 91-132 (168)
14 1rm8_A MMP-16, matrix metallop 30.3 24 0.001 15.2 2.3 46 100-147 93-138 (169)
15 1i76_A MMP-8;, neutrophil coll 28.9 25 0.0011 15.0 2.2 45 98-147 89-133 (163)
16 2w08_A Serum amyloid P-compone 27.9 29 0.0012 14.7 2.5 38 61-108 163-200 (204)
17 1hy7_A Stromelysin-1, MMP-3; m 26.0 31 0.0013 14.5 2.2 42 101-147 93-134 (173)
18 830c_A MMP-13, MMP-13; matrix 24.5 34 0.0014 14.3 2.4 43 100-147 92-134 (168)
19 2ovx_A Matrix metalloproteinas 23.1 36 0.0015 14.2 2.5 43 101-147 90-132 (159)
20 1qib_A Protein (gelatinase A); 21.5 32 0.0014 14.4 1.6 23 125-147 108-130 (161)
21 2jsd_A Matrix metalloproteinas 21.3 39 0.0017 13.9 2.2 43 100-147 87-129 (160)
22 1y93_A Macrophage metalloelast 20.7 38 0.0016 14.0 1.8 23 125-147 107-129 (159)
No 1
>1xm5_A Hypothetical UPF0054 protein YBEY; structural genomics, protein structure initiative, nysgxrc target T842, PFAM family UPF0054, PSI; 2.70A {Escherichia coli} SCOP: d.92.1.15
Probab=100.00 E-value=0 Score=292.37 Aligned_cols=153 Identities=39% Similarity=0.648 Sum_probs=128.7
Q ss_pred CCCCCEEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 13543058888548521111352579999999999997432201466743899998577999999999850489851566
Q gi|254780427|r 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 (171)
Q Consensus 6 ~~~~~i~I~i~ie~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLS 85 (171)
|+..++++++.|++..+ ++.... +.+|+..++... .+.++|||.|||+++|++||++||++|+||||||
T Consensus 1 m~~~~i~iq~~~~~~~~---~P~~~~----i~~~~~~~l~~~----~~~~evsi~~v~~~~m~~LN~~yr~kd~~TDVLS 69 (155)
T 1xm5_A 1 MSQVILDLQLACEDNSG---LPEESQ----FQTWLNAVIPQF----QEESEVTIRVVDTAESHSLNLTYRGKDKPTNVLS 69 (155)
T ss_dssp CCEEEEEEEECSSSCCS---CCCHHH----HHHHHHTTSHHH----HSEEEEEEEEECHHHHHHHHHHHHCCSSCCSEEE
T ss_pred CCCEEEEEEEECCCCCC---CCCHHH----HHHHHHHHHHHC----CCCEEEEEEEECHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 98359998764378768---889999----999999999846----9981799999897999999999948999985798
Q ss_pred ECCCCCCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 32556677765653002046518888744666189899999999999899863888998899999999999999986888
Q gi|254780427|r 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 (171)
Q Consensus 86 FP~~~~~~~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~~~~M~~~E~~iL~~l~i~ 165 (171)
||+... +..+...||||+||+++|.+||+++++++.+|++||+|||+|||+||||+++++++.|+++|+++|+++|++
T Consensus 70 Fp~~~~--~~~~~~~lGDI~I~~~~i~~~A~~~~~s~~~el~~l~iHG~LHLlGyDH~~~~~~~~M~~~E~~~L~~lg~~ 147 (155)
T 1xm5_A 70 FPFEVP--PGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYE 147 (155)
T ss_dssp EECCCC--SSCCCCEEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred EECCCC--CCCCCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 742025--676644445556649999999999199799999999999999973788898389999999999999986999
Q ss_pred CCCCCC
Q ss_conf 864479
Q gi|254780427|r 166 DPYEVD 171 (171)
Q Consensus 166 ~PY~~~ 171 (171)
|||-.+
T Consensus 148 nPY~~~ 153 (155)
T 1xm5_A 148 DPYIAE 153 (155)
T ss_dssp CSCCC-
T ss_pred CCCCCC
T ss_conf 987655
No 2
>1xax_A Hypothetical UPF0054 protein HI0004; structural genomics, MMP, hydrolase, protein structure initiative, S2F, structure 2 function project; NMR {Haemophilus influenzae}
Probab=100.00 E-value=0 Score=290.35 Aligned_cols=153 Identities=37% Similarity=0.620 Sum_probs=127.6
Q ss_pred CCCCCEEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 13543058888548521111352579999999999997432201466743899998577999999999850489851566
Q gi|254780427|r 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 (171)
Q Consensus 6 ~~~~~i~I~i~ie~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLS 85 (171)
|+..++++++.+++. . .++... .+.+|+..++... ...++|||.|||+++|++||++|||+|+||||||
T Consensus 1 m~~~~~dlqi~~~~~--~-~lp~~~----~i~~~i~~~l~~~----~~~~ev~i~~v~~~~m~~LN~~~r~kd~~TDVLS 69 (154)
T 1xax_A 1 MGSVLVDLQIATENI--E-GLPTEE----QIVQWATGAVQPE----GNEVEMTVRIVDEAESHELNLTYRGKDRPTNVLS 69 (154)
T ss_dssp --CEEEEEEECCSSC--S-SCCTHH----HHHHHHHHHHSSS----CCCEEEEEEECCHHHHHHHHHHHTCCCSSCSEEE
T ss_pred CCCEEEEEEEECCCC--C-CCCCHH----HHHHHHHHHHHHH----CCCEEEEEEEECHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 982699976534786--5-898999----9999999999860----9976999999888999999999938999983888
Q ss_pred ECCCCCCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 32556677765653002046518888744666189899999999999899863888998899999999999999986888
Q gi|254780427|r 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 (171)
Q Consensus 86 FP~~~~~~~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~~~~M~~~E~~iL~~l~i~ 165 (171)
||+.... .....+||||+||+++|.+||.++++++.+|+.+|+|||+|||+||||.+++++..|+++|+++|+++||+
T Consensus 70 Fp~~~~~--~~~~~~lGdI~I~~~~i~~~a~~~~~~~~~el~~l~iHGlLHLlGyDH~~~~~~~~M~~~E~~iL~~l~i~ 147 (154)
T 1xax_A 70 FPFECPD--EVELPLLGDLVICRQVVEREASEQEKPLMAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFD 147 (154)
T ss_dssp ECCCCSS--CCCCCCCBEEEECHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCCCCTTTHHHHHHHHHHHHHTTTTC-
T ss_pred ECCCCCC--CCCCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 6356887--53312355645529999999999399999999999999999973788898589999999999999986999
Q ss_pred CCCCCC
Q ss_conf 864479
Q gi|254780427|r 166 DPYEVD 171 (171)
Q Consensus 166 ~PY~~~ 171 (171)
|||-++
T Consensus 148 ~Py~~~ 153 (154)
T 1xax_A 148 DPYLAE 153 (154)
T ss_dssp ------
T ss_pred CCCCCC
T ss_conf 988767
No 3
>1oz9_A Hypothetical protein AQ_1354; matrix metalloproteinase type fold, structural genomics, BSGC structure funded by NIH; 1.89A {Aquifex aeolicus} SCOP: d.92.1.15
Probab=100.00 E-value=1.8e-41 Score=258.69 Aligned_cols=146 Identities=34% Similarity=0.471 Sum_probs=114.4
Q ss_pred CCCCCCCCCCEEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCC
Q ss_conf 99642135430588885485211113525799999999999974322014667438999985779999999998504898
Q gi|254780427|r 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 (171)
Q Consensus 1 m~~kK~~~~~i~I~i~ie~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eisi~l~dd~~i~~LN~~yr~kd~~ 80 (171)
|+..| .....|.+......|.. ..+.+++..++...+. +.++|||.|||+++|++||++|||+|+|
T Consensus 1 m~~~~--~~~~~i~~~~~~~~i~~---------~~l~k~~~~~l~~~~~---~~~~v~i~~v~d~~i~~LN~~yr~~d~~ 66 (150)
T 1oz9_A 1 MSSTK--RQKNRVLVKLKKRKVRK---------DKIEKWAELALSALGL---NNVELSVYITDDQEIRELNKTYRKKDKP 66 (150)
T ss_dssp ---------CCEEEEEESSCSSCH---------HHHHHHHHHHHHHTTC---CSEEEEEEEECHHHHHHHHHHHHSCCSC
T ss_pred CCCCC--CCCCEEEEEHHHCCCCH---------HHHHHHHHHHHHHCCC---CCEEEEEEEECHHHHHHHHHHHHCCCCC
T ss_conf 97541--21356765055434699---------9999999999998499---9738999998879999999999679998
Q ss_pred CCEEEECCCCCCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHHHH
Q ss_conf 51566325566777656530020465188887446661898999999999998998638889988-99999999999999
Q gi|254780427|r 81 TNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD-KDACVMEGLERSIL 159 (171)
Q Consensus 81 TDVLSFP~~~~~~~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~-~~~~~M~~~E~~iL 159 (171)
|||||||+.+.. ....++|||+||+++|.+||.++++++.+|+++|+|||+|||+||||+++ ++++.|+.+|+++|
T Consensus 67 TDVLSFp~~~~~---~~~~~lGdI~Is~~~i~~~A~~~~~~~~~el~~l~iHGlLHLlGyDH~~~~~~~~~M~~~E~~iL 143 (150)
T 1oz9_A 67 TDVLSFPMGEEF---GGYKILGDVVISQDTAERQARELGHSLEEEVKRLIVHGIVHLLGYDHEKGGEEEKKFRELENYVL 143 (150)
T ss_dssp CSEEEEECCCEE---TTEEEEEEEEEEHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCC---CCCCCCCCEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 755774365554---44422455002499999999990999999999999999999807888999899999999999999
Q ss_pred HHCC
Q ss_conf 9868
Q gi|254780427|r 160 EDLG 163 (171)
Q Consensus 160 ~~l~ 163 (171)
+++.
T Consensus 144 ~~l~ 147 (150)
T 1oz9_A 144 SKLS 147 (150)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9975
No 4
>1tvi_A Hypothetical UPF0054 protein TM1509; alpha + beta, mixed 4-stranded beta sheet, four helix bundle, structural genomics; NMR {Thermotoga maritima} SCOP: d.92.1.15
Probab=100.00 E-value=3e-42 Score=263.15 Aligned_cols=112 Identities=33% Similarity=0.560 Sum_probs=104.2
Q ss_pred CCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 74389999857799999999985048985156632556677765653002046518888744666189899999999999
Q gi|254780427|r 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 (171)
Q Consensus 53 ~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSFP~~~~~~~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iH 132 (171)
+.++|||.|||+++|++||++||++|+||||||||+.+ ..++|||+||+++|.+||.++++++.+|+++|+||
T Consensus 52 ~~~~vsi~fv~~~~i~~LN~~yr~k~~~TDVLSFp~~~-------~~~lGdI~Is~e~i~~~A~~~~~s~~~el~~l~iH 124 (172)
T 1tvi_A 52 GDVHVNVILVSEDEIKELNQQFRGQDRPTDVLTFPLME-------EDVYGEIYVCPLIVEENAREFNNTFEKELLEVVIH 124 (172)
T ss_dssp SCCCCEEEECCHHHHHHHHHTTTCCCCCCSEECCCCCS-------SSCCSEEEECHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCEEEEEEEECHHHHHHHHHHHHCCCCCCCEEEECCCC-------CCCCCEEEECHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 87699999988899999999995799998678857865-------21388499869999999999099899999999999
Q ss_pred HHHHHCCCCCCC-HHHHHHHHHHHHHHHHHC---CCCCCCCCC
Q ss_conf 899863888998-899999999999999986---888864479
Q gi|254780427|r 133 GFLHLLGYDHVD-DKDACVMEGLERSILEDL---GINDPYEVD 171 (171)
Q Consensus 133 G~LHLlGydH~~-~~~~~~M~~~E~~iL~~l---~i~~PY~~~ 171 (171)
|+|||+||||++ +++++.|+.+|+++|+++ +++|||.+.
T Consensus 125 GlLHLlGyDH~~~~~~~~~M~~~E~~il~~i~~e~~~nPy~~~ 167 (172)
T 1tvi_A 125 GILHLAGYDHEFEDKNSKEMFEKQKKYVEEVWGEWRSNPSEDS 167 (172)
T ss_dssp HHHHHHSCSSCCTTSCCHHHHHHHHHHHHHHHHHHTTSCSCSC
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9999648899998789999999999999999840788866678
No 5
>1lml_A Leishmanolysin; metalloprotease, glycoprotein; 1.86A {Leishmania major} SCOP: d.92.1.3
Probab=79.47 E-value=0.75 Score=23.88 Aligned_cols=40 Identities=18% Similarity=0.339 Sum_probs=30.5
Q ss_pred CCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 56530020465188887446661898999999999998998638889
Q gi|254780427|r 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 (171)
Q Consensus 96 ~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH 142 (171)
...+..|=|.|++..+... ..+.+..+++|-++|.|||..
T Consensus 136 ~~RPi~G~i~~n~~~~~~~-------~~~~~~~~~~HEi~H~LGfs~ 175 (478)
T 1lml_A 136 DGHPAVGVINIPAANIASR-------YDQLVTRVVTHEMAHALGFSG 175 (478)
T ss_dssp TSCEEEEEEECCGGGCCCS-------CCHHHHHHHHHHHHHHTTCSH
T ss_pred CCCCEEEEEECCHHHCCCC-------CCHHHHHHHHHHHHHHHCCCH
T ss_conf 7896621564177566863-------006899999999988742583
No 6
>1xfi_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2G17340, center for eukaryotic structural genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1 PDB: 2q40_A
Probab=52.93 E-value=2.5 Score=20.86 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=29.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 874466618989999999999989986388899889999999999999998688886447
Q gi|254780427|r 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 (171)
Q Consensus 111 i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~~~~M~~~E~~iL~~l~i~~PY~~ 170 (171)
+.+.|..+...+..++..+-.|.. .|.-. .....|...-++.|..+|++|||+.
T Consensus 69 a~~ra~~f~~~~~~~l~~l~~~p~----~~g~~--~~~~~l~~~re~~lr~~G~~DPY~~ 122 (367)
T 1xfi_A 69 APARAEKFAERYAGILEDLKKDPE----SHGGP--PDGILLCRLREQVLRELGFRDIFKK 122 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTT----GGGCS--CCHHHHHHHHHHHHHHTTCSCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC----CCCCC--CHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 899999999999999999974877----66762--0788899999999996699994789
No 7
>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} PDB: 3edg_A 3edi_A
Probab=49.10 E-value=5.8 Score=18.72 Aligned_cols=18 Identities=22% Similarity=0.575 Sum_probs=16.0
Q ss_pred HHHHHHHHHHCCCCCCCH
Q ss_conf 999998998638889988
Q gi|254780427|r 128 HLIIHGFLHLLGYDHVDD 145 (171)
Q Consensus 128 ~l~iHG~LHLlGydH~~~ 145 (171)
-.++|=++|.||+-|+..
T Consensus 89 g~i~HEl~HaLGf~HEh~ 106 (201)
T 3edh_A 89 GIVVHELGHVVGFWHEHT 106 (201)
T ss_dssp HHHHHHHHHHHTBCCGGG
T ss_pred CCHHHHHHHHHCCCCCCC
T ss_conf 603888888754633325
No 8
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio}
Probab=46.58 E-value=7 Score=18.27 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHCCCCCCCH
Q ss_conf 9999998998638889988
Q gi|254780427|r 127 VHLIIHGFLHLLGYDHVDD 145 (171)
Q Consensus 127 ~~l~iHG~LHLlGydH~~~ 145 (171)
...++|=++|.||+-|+..
T Consensus 94 ~gti~HEl~HAlGf~HEh~ 112 (199)
T 3lqb_A 94 SGIAQHELNHALGFYHEQS 112 (199)
T ss_dssp HHHHHHHHHHHHTCCCGGG
T ss_pred CCHHHHHHHHHHCCCCCCC
T ss_conf 5448999999856886121
No 9
>3lmc_A Peptidase, zinc-dependent; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Methanocorpusculum labreanum}
Probab=42.47 E-value=17 Score=16.08 Aligned_cols=43 Identities=21% Similarity=0.263 Sum_probs=28.8
Q ss_pred HEEEEEHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 204651888874466---6189899999999999899863888998
Q gi|254780427|r 102 GDIVLAYEIIEIEAN---VLGKEFENHLVHLIIHGFLHLLGYDHVD 144 (171)
Q Consensus 102 GDIvIs~~~i~~eA~---~~~~~~~~e~~~l~iHG~LHLlGydH~~ 144 (171)
|=-|+|.-+...+-- .....+.+-++..++|.+-|++|-+|=.
T Consensus 116 ~vaVvS~~RL~~~fyg~~~~~~l~~~Rv~Kea~HElGHlfGL~HC~ 161 (210)
T 3lmc_A 116 GVAIVSPHRLQNEFYGKYADDSALIDRIVKEGAHEIGHLFGLGHCD 161 (210)
T ss_dssp TEEEECGGGTSGGGGTCCCCHHHHHHHHHHHHHHHHHHHTTCCCCS
T ss_pred CEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 8899982433765457764157899999999999889872898889
No 10
>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, Z disulfide bond, hydrolase, metal-binding, metalloprotease,; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A
Probab=41.86 E-value=6.8 Score=18.35 Aligned_cols=19 Identities=26% Similarity=0.604 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHCCCCCCCH
Q ss_conf 9999998998638889988
Q gi|254780427|r 127 VHLIIHGFLHLLGYDHVDD 145 (171)
Q Consensus 127 ~~l~iHG~LHLlGydH~~~ 145 (171)
.-.++|=++|.||+-|+..
T Consensus 121 ~g~i~HEl~HaLGf~HEqs 139 (235)
T 3lq0_A 121 HGTILHALMHAIGFYHEHT 139 (235)
T ss_dssp HHHHHHHHHHHHHBCCGGG
T ss_pred CCHHHHHHHHHHCCCCHHH
T ss_conf 5579999999856851431
No 11
>2x7m_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.50A {Methanopyrus kandleri}
Probab=34.83 E-value=22 Score=15.37 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=28.4
Q ss_pred HEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 2046518888744666189899999999999899863888998
Q gi|254780427|r 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 (171)
Q Consensus 102 GDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~ 144 (171)
|--++|.-+...... .-+.+.++..++|-+-|++|-+|=.
T Consensus 118 ~vaVVS~~RL~~~~~---~l~l~Rv~Kea~HElGHlfGL~HC~ 157 (195)
T 2x7m_A 118 REAVVSVARLLDPDP---ELYLERVVKELTHELGHTFGLGHCP 157 (195)
T ss_dssp SEEEEECTTTCCSSH---HHHHHHHHHHHHHHHHHHTTCCCCS
T ss_pred CEEEEEECCCCCCCH---HHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 879998001589767---7999999999999989871876789
No 12
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Probab=34.03 E-value=21 Score=15.49 Aligned_cols=42 Identities=26% Similarity=0.449 Sum_probs=27.7
Q ss_pred HHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 0204651888874466618989999999999989986388899889
Q gi|254780427|r 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 (171)
Q Consensus 101 LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~ 146 (171)
-++|.+............+. .+..+++|-+=|.||.+|..+.
T Consensus 92 ~~~i~~~~~~~~~~~~~~~~----~~~~~~~HEiGHaLGL~H~~~~ 133 (165)
T 1hv5_A 92 EGDVHFDYDETWTIGDNQGT----DLLQVAAHEFGHVLGLQHTTAA 133 (165)
T ss_dssp SEEEEEETTSCEESSCSSSE----EHHHHHHHHHHHHTTCCCCSCT
T ss_pred CEEEEECCCCCCCCCCCCCC----CHHHHHHHHHHHHCCCCCCCCC
T ss_conf 20587115411334776573----3633223442012046878998
No 13
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A*
Probab=31.44 E-value=25 Score=15.09 Aligned_cols=42 Identities=24% Similarity=0.173 Sum_probs=25.8
Q ss_pred HHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 02046518888744666189899999999999899863888998899
Q gi|254780427|r 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 (171)
Q Consensus 101 LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~ 147 (171)
-|+|.+-...... .-.....+..+++|-+-|.||-+|..+..
T Consensus 91 ~~~i~~~~~~~~~-----~~~~~~~~~~v~~HEiGHaLGL~H~~~~~ 132 (168)
T 1cge_A 91 GGDAHFDEDERWT-----NNFREYNLHRVAAHELGHSLGLSHSTDIG 132 (168)
T ss_dssp TTCEEEETTSCCB-----SSSSSCBHHHHHHHHHHHHTTCCCCSCTT
T ss_pred EEEEECCCCCCCC-----CCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 1059801310125-----56430257888987651111689989987
No 14
>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type - matrix metalloproteinase, batimastat, hydroxamate inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo sapiens} SCOP: d.92.1.11
Probab=30.31 E-value=24 Score=15.17 Aligned_cols=46 Identities=24% Similarity=0.266 Sum_probs=27.3
Q ss_pred CHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 002046518888744666189899999999999899863888998899
Q gi|254780427|r 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 (171)
Q Consensus 100 ~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~ 147 (171)
.-||+.+.......... .. .-...+..+++|-+-|.||.+|..+..
T Consensus 93 ~~~~~~~~~~~~~~~~~-~~-~~~~~~~~v~~HEiGHaLGL~H~~~~~ 138 (169)
T 1rm8_A 93 IGGDTHFDSDEPWTLGN-PN-HDGNDLFLVAVHELGHALGLEHSNDPT 138 (169)
T ss_dssp TTTCEEEETTSCEESSC-CS-SSSEEHHHHHHHHHHHHHTCCCCSCTT
T ss_pred CCCCEEEECCCCCCCCC-CC-CCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 45535650222123345-57-876217677777777651678899998
No 15
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ...
Probab=28.94 E-value=25 Score=15.04 Aligned_cols=45 Identities=24% Similarity=0.194 Sum_probs=28.2
Q ss_pred CCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 53002046518888744666189899999999999899863888998899
Q gi|254780427|r 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 (171)
Q Consensus 98 ~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~ 147 (171)
....|||.+-.+.-.. .. .....+...++|-+-|.||-+|..+..
T Consensus 89 ~~~~~~i~~~~~~~~~----~~-~~~~~~~~v~~HEIGHaLGL~H~~~~~ 133 (163)
T 1i76_A 89 QGIGGDAHFDAEETWT----NT-SANYNLFLVAAHEFGHSLGLAHSSDPG 133 (163)
T ss_dssp STTTTCEEEETTSCCB----SS-SSSCBHHHHHHHHHHHHHTBCCCSCTT
T ss_pred CCEEEEEECCHHHCCC----CC-CCCCEEEEEEEEECCCEECCCCCCCCC
T ss_conf 7440058546443445----45-666325788632001100456789998
No 16
>2w08_A Serum amyloid P-component; glycoprotein, polymorphism, metal-binding, TAU, lectin, calcium, secreted, alzheimers; HET: NAG TPO; 1.70A {Homo sapiens} PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A* 3d5o_A*
Probab=27.89 E-value=29 Score=14.68 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=25.7
Q ss_pred EECHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHEEEEEH
Q ss_conf 857799999999985048985156632556677765653002046518
Q gi|254780427|r 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAY 108 (171)
Q Consensus 61 l~dd~~i~~LN~~yr~kd~~TDVLSFP~~~~~~~~~~~~~LGDIvIs~ 108 (171)
-.+.+||++| |.+...+-||++|+... ....|.|++.|
T Consensus 163 ~Ls~~EI~~l---y~~~~~~g~v~~W~~~~-------~~~~g~v~~~p 200 (204)
T 2w08_A 163 VLPPENILSA---YQGTPLPANILDWQALN-------YEIRGYVIIKP 200 (204)
T ss_dssp CCCHHHHHHH---HHTCCCCCSSEEGGGBC-------EEEESSCEEEE
T ss_pred CCCHHHHHHH---HHCCCCCCCEECHHHCE-------EEEECEEEEEC
T ss_conf 7999999999---82899998891623365-------77507599821
No 17
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrolase; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 1ciz_A* 1caq_A* ...
Probab=25.98 E-value=31 Score=14.55 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=25.2
Q ss_pred HHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 02046518888744666189899999999999899863888998899
Q gi|254780427|r 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 (171)
Q Consensus 101 LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~ 147 (171)
.|++.+.......... . ...+..+++|-+=|.||.+|..+..
T Consensus 93 ~~~~~~~~~~~~~~~~--~---~~~~~~v~~HEiGHALGL~H~~~~~ 134 (173)
T 1hy7_A 93 NGDAHFDDDEQWTKDT--T---GTNLFLVAAHEIGHSLGLFHSANTE 134 (173)
T ss_dssp TTCEEEETTSCEESSS--S---SEEHHHHHHHHHHHHHTBCCCSCTT
T ss_pred CCEEECCCCCCCCCCC--C---CCCHHHEEHHHHCCCCCCCCCCCCC
T ss_conf 1337503532233344--3---3213210023323213678899987
No 18
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 3elm_A* 3i7g_A* 3i7i_A* 2ow9_A* 2ozr_A* 2d1n_A* 1fls_A* 1fm1_A* 1ztq_A* 2e2d_A 2pjt_A* 1cxv_A*
Probab=24.49 E-value=34 Score=14.31 Aligned_cols=43 Identities=26% Similarity=0.245 Sum_probs=25.6
Q ss_pred CHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 002046518888744666189899999999999899863888998899
Q gi|254780427|r 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 (171)
Q Consensus 100 ~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~ 147 (171)
.-|+|.+-...-... ... ...+..+++|-+-|.||-+|..+..
T Consensus 92 ~~~~i~~~~~~~~~~--~~~---~~~~~~v~~HEiGHaLGL~H~~~~~ 134 (168)
T 830c_A 92 YGGDAHFDDDETWTS--SSK---GYNLFLVAAHEFGHSLGLDHSKDPG 134 (168)
T ss_dssp TTTCEEEETTSCEES--SSS---SEEHHHHHHHHHHHHTTBCCCSCTT
T ss_pred CCCEEECCCCCCCCC--CCC---CCEEEEEEEEECCCCCCCCCCCCCC
T ss_conf 243276245311222--578---8557888643114455878889998
No 19
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP- 9) (92 kDa type IV collagenase) (92...; hydrolase, S1-prime pocket; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Probab=23.10 E-value=36 Score=14.15 Aligned_cols=43 Identities=26% Similarity=0.280 Sum_probs=25.8
Q ss_pred HHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 02046518888744666189899999999999899863888998899
Q gi|254780427|r 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 (171)
Q Consensus 101 LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~ 147 (171)
.|++.+-...........+ ..+...++|-+=|.||-+|....+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~----~~~~~v~~HEiGHaLGL~H~~~~~ 132 (159)
T 2ovx_A 90 QGDAHFDDDELWSLGKGQG----YSLFLVAAHQFGHALGLDHSSVPE 132 (159)
T ss_dssp TTCEEEETTSCEECSSSSS----EEHHHHHHHHHHHHTTCCCCSCTT
T ss_pred CCCEEECCCCCCCCCCCCC----CCHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 3530103320222466646----313344545504200588999986
No 20
>1qib_A Protein (gelatinase A); inhibitor, matrixin, matrix metalloproteinase-2 (MMP-2), metzincin, hydrolase; 2.80A {Homo sapiens} SCOP: d.92.1.11 PDB: 1hov_A*
Probab=21.54 E-value=32 Score=14.44 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 99999999899863888998899
Q gi|254780427|r 125 HLVHLIIHGFLHLLGYDHVDDKD 147 (171)
Q Consensus 125 e~~~l~iHG~LHLlGydH~~~~~ 147 (171)
.+..+++|-+=|.||..|..+.+
T Consensus 108 ~~~~~~~HEiGHaLGL~H~~~~~ 130 (161)
T 1qib_A 108 SLFLVAAHEFGHAMGLEHSQDPG 130 (161)
T ss_dssp EHHHHHHHHHHHHHTCCCCSCTT
T ss_pred CEEEEEEEECCCCCCCCCCCCCC
T ss_conf 21355312104234788899987
No 21
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}
Probab=21.33 E-value=39 Score=13.94 Aligned_cols=43 Identities=23% Similarity=0.179 Sum_probs=26.5
Q ss_pred CHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 002046518888744666189899999999999899863888998899
Q gi|254780427|r 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 (171)
Q Consensus 100 ~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~ 147 (171)
..||+.+....... .. .....+..+++|-+=|.||.+|..+..
T Consensus 87 ~~~~~~~~~~~~~~--~~---~~~~~~~~v~~HEiGHaLGL~H~~~~~ 129 (160)
T 2jsd_A 87 LGGDTHFDNAEKWT--MG---TNGFNLFTVAAHEFGHALGLAHSTDPS 129 (160)
T ss_dssp STTCEEEETTSCEE--SS---SSSEEHHHHHHHHHHHHHTCCCCCCTT
T ss_pred CCCEEEECCCCCCC--CC---CCCCEEEEEEEEECCCCCCCCCCCCCC
T ss_conf 04406743400233--46---777314677611001100568899998
No 22
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase-inhibitor), acetohydroxamic acid, hydrolase; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* 3f1a_A* 3lka_A* 2wo9_A* 2wo8_A* ...
Probab=20.65 E-value=38 Score=14.02 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 99999999899863888998899
Q gi|254780427|r 125 HLVHLIIHGFLHLLGYDHVDDKD 147 (171)
Q Consensus 125 e~~~l~iHG~LHLlGydH~~~~~ 147 (171)
.+...++|-+=|.||.+|..+.+
T Consensus 107 ~~~~v~~HEiGHaLGL~H~~~~~ 129 (159)
T 1y93_A 107 NLFLTAVHEIGHSLGLGHSSDPK 129 (159)
T ss_dssp EHHHHHHHHHHHHTTCCCCSCTT
T ss_pred CHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 26555477665540788899998
Done!