BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780427|ref|YP_003064840.1| hypothetical protein CLIBASIA_01560 [Candidatus Liberibacter asiaticus str. psy62] (171 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254780427|ref|YP_003064840.1| hypothetical protein CLIBASIA_01560 [Candidatus Liberibacter asiaticus str. psy62] gi|254040104|gb|ACT56900.1| hypothetical protein CLIBASIA_01560 [Candidatus Liberibacter asiaticus str. psy62] Length = 171 Score = 179 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 171/171 (100%), Positives = 171/171 (100%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV Sbjct: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK Sbjct: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD Sbjct: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 >gi|222147353|ref|YP_002548310.1| hypothetical protein Avi_0440 [Agrobacterium vitis S4] gi|254803905|sp|B9JZJ4|RRMF_AGRVS RecName: Full=Probable rRNA maturation factor gi|221734343|gb|ACM35306.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 167 Score = 164 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 73/161 (45%), Positives = 96/161 (59%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + +LD+QIA+E W DE L L + A + ++G E+SLVFT I Sbjct: 1 MKKLDVQIAIEADGWPDEAELEALSTRILDHAADFIAAEGQPFAPMPAEVSLVFTGDTEI 60 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 + +N E+RG DKPTNVLSFP MLGDIV+A + +E EA L K +HL Sbjct: 61 QAINSEWRGQDKPTNVLSFPAYPIEPGDKPGPMLGDIVIARQTVEREAAELEKTITDHLT 120 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL++HGFLHL GYDH+ + +A MEGLE IL LG++DPY Sbjct: 121 HLMVHGFLHLFGYDHMTEDEAEEMEGLETRILAGLGLSDPY 161 >gi|15964160|ref|NP_384513.1| hypothetical protein SMc01113 [Sinorhizobium meliloti 1021] gi|307301305|ref|ZP_07581067.1| protein of unknown function UPF0054 [Sinorhizobium meliloti BL225C] gi|307317976|ref|ZP_07597413.1| protein of unknown function UPF0054 [Sinorhizobium meliloti AK83] gi|26006908|sp|Q92SI5|RRMF_RHIME RecName: Full=Probable rRNA maturation factor gi|15073336|emb|CAC41844.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306896378|gb|EFN27127.1| protein of unknown function UPF0054 [Sinorhizobium meliloti AK83] gi|306903761|gb|EFN34348.1| protein of unknown function UPF0054 [Sinorhizobium meliloti BL225C] Length = 168 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 77/164 (46%), Positives = 98/164 (59%), Gaps = 1/164 (0%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKG-YFVKENIVELSLVFTDSHR 66 + LD+QI+VE W E L++ CE V A L + + ELSLVFTD Sbjct: 1 MTALDIQISVEAGDWPPEDELQSFCERVLEAAADFLAREENQPLPAQAAELSLVFTDDQS 60 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I +N E+RG DK TNVLSFP + MLGDIV+A+E + EA L K F+ HL Sbjct: 61 IRAINAEWRGQDKATNVLSFPAFPVTPGRMPGPMLGDIVVAHETLRREAAELEKPFDAHL 120 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HL++HGFLHL GYDH++D +A MEGLE IL LG++DPY Sbjct: 121 THLLVHGFLHLFGYDHIEDDEAERMEGLETRILARLGLSDPYGD 164 >gi|150395270|ref|YP_001325737.1| hypothetical protein Smed_0042 [Sinorhizobium medicae WSM419] gi|166227780|sp|A6U5H2|RRMF_SINMW RecName: Full=Probable rRNA maturation factor gi|150026785|gb|ABR58902.1| protein of unknown function UPF0054 [Sinorhizobium medicae WSM419] Length = 168 Score = 159 bits (403), Expect = 9e-38, Method: Composition-based stats. Identities = 78/164 (47%), Positives = 100/164 (60%), Gaps = 1/164 (0%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKG-YFVKENIVELSLVFTDSHR 66 + LD+QI+VE W E L++ EVV A L + + ELSLVFTD Sbjct: 1 MTALDIQISVEAGDWPPEDELQSFSEVVLEAAADFLAREERQPLSAEAAELSLVFTDDQS 60 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I+ +N E+RG DKPTNVLSFP + LMLGDIV+A+E + EA L K F+ HL Sbjct: 61 IKAINAEWRGQDKPTNVLSFPAFPVTPGKMPGLMLGDIVVAHETLRREAAELEKPFDAHL 120 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HL++HGFLHL GYDH++D +A ME LE IL LG++DPY Sbjct: 121 THLLVHGFLHLFGYDHIEDDEAERMERLETRILARLGLSDPYGD 164 >gi|227820630|ref|YP_002824600.1| hypothetical protein NGR_c00430 [Sinorhizobium fredii NGR234] gi|254799468|sp|C3MF10|RRMF_RHISN RecName: Full=Probable rRNA maturation factor gi|227339629|gb|ACP23847.1| conserved hypothetical protein [Sinorhizobium fredii NGR234] Length = 173 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 77/164 (46%), Positives = 101/164 (61%), Gaps = 1/164 (0%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGY-FVKENIVELSLVFTDSHR 66 + LD+QI+VE W E L+ L + V+ LI++ ++ ELSLVFTD Sbjct: 1 MTALDIQISVEEGDWPSEDELQGLSTRILDVTVAFLIAEEKQPFPDDPPELSLVFTDDQS 60 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I +N E+R DKPTNVLSFP + MLGDI++AYE +E EA + K FE HL Sbjct: 61 IREINAEWRNQDKPTNVLSFPAFPVTPGNMPGPMLGDIIVAYETLEREAAEMEKPFEEHL 120 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HL++HGFLHL GYDH++D +A MEGLE IL LG++DPY Sbjct: 121 THLLVHGFLHLFGYDHIEDDEAERMEGLETRILARLGLSDPYGD 164 >gi|222084695|ref|YP_002543224.1| hypothetical protein Arad_0658 [Agrobacterium radiobacter K84] gi|221722143|gb|ACM25299.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 169 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 75/162 (46%), Positives = 99/162 (61%), Gaps = 1/162 (0%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLIS-KGYFVKENIVELSLVFTDSHR 66 + LD+QI+VE W E L+ L E V A + L + + +E+SLVFTD Sbjct: 2 MAELDIQISVEEGDWPSEDVLQALAERVLGVAAAYLKKNEKQPFPKTALEVSLVFTDDAA 61 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I +N E+R DK TNVLSFP G MLGDI++A E +E EA L K F++HL Sbjct: 62 IREINAEWREQDKATNVLSFPAFPLVPGGKPGPMLGDIIIARETVEREAVELEKSFDDHL 121 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL++HGFLHL GYDH+++ +A MEGLE IL LG++DPY Sbjct: 122 THLMVHGFLHLFGYDHMNNSEAERMEGLETRILAGLGLSDPY 163 >gi|241202783|ref|YP_002973879.1| hypothetical protein Rleg_0029 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856673|gb|ACS54340.1| protein of unknown function UPF0054 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 171 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 79/163 (48%), Positives = 102/163 (62%), Gaps = 1/163 (0%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI-SKGYFVKENIVELSLVFTDSHR 66 + LD+QI+VE+ W E L + CE V AV L S+ E+SLVFTD Sbjct: 1 MAELDIQISVEDIGWPGEETLLSFCERVLGAAVVYLSDSEKQPFPTLPPEVSLVFTDDAS 60 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I+ +N E+RG DK TNVLSFP MLGDI++A E +E EA L K F++HL Sbjct: 61 IQDINAEWRGKDKATNVLSFPAFPVQPGKMPGPMLGDIIIARETLEREAAELEKSFDDHL 120 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HGFLHLLGYDH++ +A +MEGLE IL LG++DPYE Sbjct: 121 THLLVHGFLHLLGYDHMNSAEAEIMEGLETRILAQLGLSDPYE 163 >gi|153008092|ref|YP_001369307.1| hypothetical protein Oant_0756 [Ochrobactrum anthropi ATCC 49188] gi|166228855|sp|A6WWX4|RRMF_OCHA4 RecName: Full=Probable rRNA maturation factor gi|151559980|gb|ABS13478.1| protein of unknown function UPF0054 [Ochrobactrum anthropi ATCC 49188] Length = 162 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 81/165 (49%), Positives = 97/165 (58%), Gaps = 5/165 (3%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ + + I VE W DE L L A +NL +K ELS+VFTD Sbjct: 1 MSNNAIHIDIMVEAGNWPDETALEGLVRKSVEAAWANL-----GLKSAASELSVVFTDDA 55 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 I+TLN E+RG DKPTNVLSFP + MLGDI++A E +E EA GK ENH Sbjct: 56 SIQTLNAEWRGKDKPTNVLSFPAFPVKAGAQPGPMLGDIIIARETVEREAREEGKPLENH 115 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 L HL++HGFLHLLGYDH D +A VMEG ER IL L I DPY V Sbjct: 116 LAHLVVHGFLHLLGYDHETDAEAEVMEGREREILHALAIPDPYAV 160 >gi|116250162|ref|YP_766000.1| hypothetical protein RL0393 [Rhizobium leguminosarum bv. viciae 3841] gi|145558823|sp|Q1MMB8|RRMF_RHIL3 RecName: Full=Probable rRNA maturation factor gi|115254810|emb|CAK05884.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 171 Score = 154 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 78/163 (47%), Positives = 101/163 (61%), Gaps = 1/163 (0%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNL-ISKGYFVKENIVELSLVFTDSHR 66 + LD+QI+VE+ W E L + CE V A L S+ E+SLVFTD Sbjct: 1 MAELDIQISVEDIGWPGEETLLSFCERVLGAAAVYLRDSEKQPFPTMAPEVSLVFTDDAS 60 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I+ +N E+RG DK TNVLSFP MLGDI++A E +E EA L K F++HL Sbjct: 61 IQDINAEWRGKDKATNVLSFPAFPVQPGKMPGPMLGDIIIARETLEREAAELEKSFDDHL 120 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HGFLHLLGYDH++ +A +MEGLE IL LG++DPYE Sbjct: 121 THLLVHGFLHLLGYDHMNSAEAEIMEGLETRILAQLGLSDPYE 163 >gi|209547629|ref|YP_002279546.1| hypothetical protein Rleg2_0017 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226701630|sp|B5ZMX9|RRMF_RHILW RecName: Full=Probable rRNA maturation factor gi|209533385|gb|ACI53320.1| protein of unknown function UPF0054 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 171 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 77/163 (47%), Positives = 101/163 (61%), Gaps = 1/163 (0%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNL-ISKGYFVKENIVELSLVFTDSHR 66 + LD+QI+V++ W E L + CE V AV L S+ E+SLVFTD Sbjct: 1 MAELDIQISVDDIGWPGEETLLSFCERVLGAAVIYLRDSEKQPFPTMPPEVSLVFTDDAS 60 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I+ +N E+RG DK TNVLSFP MLGDI++A E +E E L K F++HL Sbjct: 61 IQDINAEWRGKDKATNVLSFPAFPVRPGKMPGPMLGDIIIARETVERETIELEKSFDDHL 120 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HGFLHLLGYDH++ +A +MEGLE IL LG++DPYE Sbjct: 121 THLLVHGFLHLLGYDHMNSDEAEIMEGLETRILAQLGLSDPYE 163 >gi|86356031|ref|YP_467923.1| hypothetical protein RHE_CH00374 [Rhizobium etli CFN 42] gi|123513247|sp|Q2KD90|RRMF_RHIEC RecName: Full=Probable rRNA maturation factor gi|86280133|gb|ABC89196.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 171 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 77/163 (47%), Positives = 103/163 (63%), Gaps = 1/163 (0%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVF-AKAVSNLISKGYFVKENIVELSLVFTDSHR 66 + LD+QI++E+ W E L CE V A A+ ++ + E+SLVFTD Sbjct: 1 MAELDIQISIEDIGWPGEETLLVFCERVLGAAAIYLRDNEKQPFPKMPPEVSLVFTDDAS 60 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I+ +N E+RG DKPTNVLSFP MLGDI++A E +E EA L K F++HL Sbjct: 61 IQDINAEWRGKDKPTNVLSFPAFPVQRGKVPGPMLGDIIIARETVEREAQELEKSFDDHL 120 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HGFLHLLGYDH+++ +A MEGLE IL LG++DPYE Sbjct: 121 THLLVHGFLHLLGYDHMNNAEAETMEGLETRILAQLGLSDPYE 163 >gi|306843573|ref|ZP_07476174.1| conserved hypothetical protein [Brucella sp. BO1] gi|306276264|gb|EFM57964.1| conserved hypothetical protein [Brucella sp. BO1] Length = 195 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 80/160 (50%), Positives = 96/160 (60%), Gaps = 5/160 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I +E W DE L +L A A +NL +K ELS+VFTD I+ L Sbjct: 33 IHIDIMIEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDASIQLL 87 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+RG DKPTNVLSFP + MLGDIV+A E +E EA GK ENHL HL+ Sbjct: 88 NGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLV 147 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +HGFLHLLGYDH D++A VME ER IL L I DPY V Sbjct: 148 VHGFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYAV 187 >gi|190890044|ref|YP_001976586.1| hypothetical protein RHECIAT_CH0000414 [Rhizobium etli CIAT 652] gi|238692546|sp|B3PZB4|RRMF_RHIE6 RecName: Full=Probable rRNA maturation factor gi|190695323|gb|ACE89408.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 171 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 77/163 (47%), Positives = 101/163 (61%), Gaps = 1/163 (0%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNL-ISKGYFVKENIVELSLVFTDSHR 66 + LD+QI++EN W +E L C V A L S+ E+SLVFTD Sbjct: 1 MAELDIQISIENIGWPEEETLLAFCGRVLGAAAVYLRDSEKQPFPTMPPEVSLVFTDDAS 60 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I+ +N E+RG DK TNVLSFP MLGDI++A E +E EA+ L K F++HL Sbjct: 61 IQDINAEWRGKDKATNVLSFPAFPVQPGKMPGPMLGDIIIARETVEREAHELEKSFDDHL 120 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HGFLHLLGYDH++ +A +MEGLE IL LG++DPYE Sbjct: 121 THLLVHGFLHLLGYDHMNSAEAEIMEGLETRILAQLGLSDPYE 163 >gi|306837707|ref|ZP_07470576.1| conserved hypothetical protein [Brucella sp. NF 2653] gi|306407265|gb|EFM63475.1| conserved hypothetical protein [Brucella sp. NF 2653] Length = 195 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 79/160 (49%), Positives = 96/160 (60%), Gaps = 5/160 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I +E W DE L +L A A +NL +K ELS+VFTD I+ L Sbjct: 33 IHIDIMIEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDASIQLL 87 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+RG DKPTNVLSFP + +LGDIV+A E +E EA GK ENHL HL+ Sbjct: 88 NGEWRGKDKPTNVLSFPAFPVKAGSQPGPLLGDIVIARETVEREAKEEGKPIENHLSHLV 147 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +HGFLHLLGYDH D++A VME ER IL L I DPY V Sbjct: 148 VHGFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYAV 187 >gi|189025205|ref|YP_001935973.1| Diacyglycerol kinase [Brucella abortus S19] gi|237816495|ref|ZP_04595488.1| conserved hypothetical protein [Brucella abortus str. 2308 A] gi|189020777|gb|ACD73499.1| Diacyglycerol kinase [Brucella abortus S19] gi|237788562|gb|EEP62777.1| conserved hypothetical protein [Brucella abortus str. 2308 A] Length = 190 Score = 150 bits (379), Expect = 5e-35, Method: Composition-based stats. Identities = 80/160 (50%), Positives = 96/160 (60%), Gaps = 5/160 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I +E W DE L +L A A +NL +K ELS+VFTD I+ L Sbjct: 28 IHIDIMIEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDASIQLL 82 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+RG DKPTNVLSFP + MLGDIV+A E +E EA GK ENHL HL+ Sbjct: 83 NGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLV 142 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +HGFLHLLGYDH D++A VME ER IL L I DPY V Sbjct: 143 VHGFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYAV 182 >gi|327188595|gb|EGE55805.1| hypothetical protein RHECNPAF_850041 [Rhizobium etli CNPAF512] Length = 171 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 77/163 (47%), Positives = 101/163 (61%), Gaps = 1/163 (0%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNL-ISKGYFVKENIVELSLVFTDSHR 66 + LD+QI++EN W +E L C V A L S+ E+SLVFTD Sbjct: 1 MAELDIQISIENIGWPEEETLLAFCGHVLGAAAVYLRDSEKQPFPTLPPEVSLVFTDDAS 60 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I+ +N E+RG DK TNVLSFP MLGDI++A E +E EA+ L K F++HL Sbjct: 61 IQDINAEWRGKDKATNVLSFPAFPVQPGKMPGPMLGDIIIARETVEREAHELEKSFDDHL 120 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HGFLHLLGYDH++ +A +MEGLE IL LG++DPYE Sbjct: 121 THLLVHGFLHLLGYDHMNSAEAEIMEGLETRILAQLGLSDPYE 163 >gi|239833204|ref|ZP_04681533.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301] gi|239825471|gb|EEQ97039.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301] Length = 162 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 81/165 (49%), Positives = 98/165 (59%), Gaps = 5/165 (3%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ + + I +E W +E L L A SNL +K ELS+VFTD Sbjct: 1 MSNNAIHIDIMIEAGNWQEENALEGLVRKSVEAAWSNL-----GLKSAASELSVVFTDDA 55 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 I+TLN E+RG DKPTNVLSFP + MLGDI++A E +E EA GK ENH Sbjct: 56 SIQTLNAEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIIIARETVEREALEEGKPLENH 115 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 LVHL++HGFLHLLGYDH D +A VMEG ER IL L I DPY V Sbjct: 116 LVHLVVHGFLHLLGYDHETDAEAEVMEGREREILHALAIPDPYAV 160 >gi|17988257|ref|NP_540891.1| diacyglycerol kinase [Brucella melitensis bv. 1 str. 16M] gi|161620064|ref|YP_001593951.1| hypothetical protein BCAN_A2198 [Brucella canis ATCC 23365] gi|163844169|ref|YP_001628574.1| hypothetical protein BSUIS_A1993 [Brucella suis ATCC 23445] gi|225626522|ref|ZP_03784561.1| conserved hypothetical protein [Brucella ceti str. Cudo] gi|225853581|ref|YP_002733814.1| hypothetical protein BMEA_A2215 [Brucella melitensis ATCC 23457] gi|254690287|ref|ZP_05153541.1| Diacyglycerol kinase [Brucella abortus bv. 6 str. 870] gi|254694775|ref|ZP_05156603.1| Diacyglycerol kinase [Brucella abortus bv. 3 str. Tulya] gi|254696403|ref|ZP_05158231.1| Diacyglycerol kinase [Brucella abortus bv. 2 str. 86/8/59] gi|254700785|ref|ZP_05162613.1| Diacyglycerol kinase [Brucella suis bv. 5 str. 513] gi|254705154|ref|ZP_05166982.1| Diacyglycerol kinase [Brucella suis bv. 3 str. 686] gi|254707329|ref|ZP_05169157.1| Diacyglycerol kinase [Brucella pinnipedialis M163/99/10] gi|254709130|ref|ZP_05170941.1| Diacyglycerol kinase [Brucella pinnipedialis B2/94] gi|254713445|ref|ZP_05175256.1| Diacyglycerol kinase [Brucella ceti M644/93/1] gi|254716199|ref|ZP_05178010.1| Diacyglycerol kinase [Brucella ceti M13/05/1] gi|254731316|ref|ZP_05189894.1| Diacyglycerol kinase [Brucella abortus bv. 4 str. 292] gi|256030655|ref|ZP_05444269.1| Diacyglycerol kinase [Brucella pinnipedialis M292/94/1] gi|256045759|ref|ZP_05448637.1| Diacyglycerol kinase [Brucella melitensis bv. 1 str. Rev.1] gi|256060116|ref|ZP_05450298.1| Diacyglycerol kinase [Brucella neotomae 5K33] gi|256112478|ref|ZP_05453399.1| Diacyglycerol kinase [Brucella melitensis bv. 3 str. Ether] gi|256158657|ref|ZP_05456540.1| Diacyglycerol kinase [Brucella ceti M490/95/1] gi|256254061|ref|ZP_05459597.1| Diacyglycerol kinase [Brucella ceti B1/94] gi|256258540|ref|ZP_05464076.1| Diacyglycerol kinase [Brucella abortus bv. 9 str. C68] gi|260169559|ref|ZP_05756370.1| Diacyglycerol kinase [Brucella sp. F5/99] gi|260755827|ref|ZP_05868175.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260759050|ref|ZP_05871398.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260760775|ref|ZP_05873118.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260884852|ref|ZP_05896466.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|261215102|ref|ZP_05929383.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|261217973|ref|ZP_05932254.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261221202|ref|ZP_05935483.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261314811|ref|ZP_05954008.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261316630|ref|ZP_05955827.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261321177|ref|ZP_05960374.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261324093|ref|ZP_05963290.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261751294|ref|ZP_05995003.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261755859|ref|ZP_05999568.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|265987702|ref|ZP_06100259.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|265992176|ref|ZP_06104733.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|265993914|ref|ZP_06106471.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|265997163|ref|ZP_06109720.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|294851380|ref|ZP_06792053.1| metalloprotease [Brucella sp. NVSL 07-0026] gi|54040443|sp|P67133|RRMF_BRUSU RecName: Full=Probable rRNA maturation factor gi|54042632|sp|P67132|RRMF_BRUME RecName: Full=Probable rRNA maturation factor gi|145572768|sp|Q57AA9|RRMF_BRUAB RecName: Full=Probable rRNA maturation factor gi|145572769|sp|Q2YQS6|RRMF_BRUA2 RecName: Full=Probable rRNA maturation factor gi|189039424|sp|B0CK02|RRMF_BRUSI RecName: Full=Probable rRNA maturation factor gi|189039776|sp|A9M9Y5|RRMF_BRUC2 RecName: Full=Probable rRNA maturation factor gi|254801689|sp|C0RG38|RRMF_BRUMB RecName: Full=Probable rRNA maturation factor gi|17984025|gb|AAL53155.1| diacyglycerol kinase [Brucella melitensis bv. 1 str. 16M] gi|161336875|gb|ABX63180.1| conserved hypothetical protein [Brucella canis ATCC 23365] gi|163674892|gb|ABY39003.1| conserved hypothetical protein [Brucella suis ATCC 23445] gi|225618179|gb|EEH15222.1| conserved hypothetical protein [Brucella ceti str. Cudo] gi|225641946|gb|ACO01860.1| conserved hypothetical protein [Brucella melitensis ATCC 23457] gi|260669368|gb|EEX56308.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260671207|gb|EEX58028.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675935|gb|EEX62756.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260874380|gb|EEX81449.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|260916709|gb|EEX83570.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|260919786|gb|EEX86439.1| conserved hypothetical protein [Brucella ceti B1/94] gi|260923062|gb|EEX89630.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261293867|gb|EEX97363.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261295853|gb|EEX99349.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261300073|gb|EEY03570.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261303837|gb|EEY07334.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261741047|gb|EEY28973.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261745612|gb|EEY33538.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|262551631|gb|EEZ07621.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|262764895|gb|EEZ10816.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263003242|gb|EEZ15535.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|264659899|gb|EEZ30160.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|294819969|gb|EFG36968.1| metalloprotease [Brucella sp. NVSL 07-0026] gi|326410154|gb|ADZ67219.1| diacylglycerol kinase [Brucella melitensis M28] gi|326539872|gb|ADZ88087.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 168 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 80/165 (48%), Positives = 98/165 (59%), Gaps = 5/165 (3%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ + + I +E W DE L +L A A +NL +K ELS+VFTD Sbjct: 1 MSDNAIHIDIMIEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDA 55 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 I+ LN E+RG DKPTNVLSFP + MLGDIV+A E +E EA GK ENH Sbjct: 56 SIQLLNGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENH 115 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 L HL++HGFLHLLGYDH D++A VME ER IL L I DPY V Sbjct: 116 LSHLVVHGFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYAV 160 >gi|254718193|ref|ZP_05180004.1| Diacyglycerol kinase [Brucella sp. 83/13] gi|265983151|ref|ZP_06095886.1| conserved hypothetical protein [Brucella sp. 83/13] gi|264661743|gb|EEZ32004.1| conserved hypothetical protein [Brucella sp. 83/13] Length = 168 Score = 149 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 79/165 (47%), Positives = 98/165 (59%), Gaps = 5/165 (3%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ + + I +E W DE L +L A A +NL +K ELS+VFTD Sbjct: 1 MSDNAIHIDIMIEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDA 55 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 I+ LN E+RG DKPTNVLSFP + +LGDIV+A E +E EA GK ENH Sbjct: 56 SIQLLNGEWRGKDKPTNVLSFPAFPVKAGSQPGPLLGDIVIARETVEREAKEEGKPIENH 115 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 L HL++HGFLHLLGYDH D++A VME ER IL L I DPY V Sbjct: 116 LSHLVVHGFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYAV 160 >gi|299133382|ref|ZP_07026577.1| protein of unknown function UPF0054 [Afipia sp. 1NLS2] gi|298593519|gb|EFI53719.1| protein of unknown function UPF0054 [Afipia sp. 1NLS2] Length = 164 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 71/155 (45%), Positives = 86/155 (55%), Gaps = 5/155 (3%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 + + W + + + A A S + E++++ TD RI LN E Sbjct: 8 DVLIAADCWQAQADAEAVIQRAIAAAAS-----FVELPAEDTEVAVMLTDDARIRELNKE 62 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 +R DK TNVLSFP A LMLGDI +AYE EA GK F+NHL HL IHG Sbjct: 63 WRDQDKATNVLSFPAAQPPGATPQPLMLGDIAIAYETTRFEAETEGKPFQNHLSHLAIHG 122 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 FLHLLGYDH+DD +A MEGLER IL LGI DPY Sbjct: 123 FLHLLGYDHLDDDEAEEMEGLERDILAKLGIADPY 157 >gi|254562379|ref|YP_003069474.1| metalloprotease [Methylobacterium extorquens DM4] gi|254269657|emb|CAX25629.1| putative metalloprotease [Methylobacterium extorquens DM4] Length = 161 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 88/160 (55%), Gaps = 4/160 (2%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++ IAVE+A W I E +AV ++ VE+S++ D ++ LN Sbjct: 5 EIDIAVEDARWEQAIP---ELEAFTLRAVEAGLAILPDSAAGPVEVSVLLADDATVQELN 61 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +R DKPTNVLSFP A S + LGD+VLAY+ + E+ K FE+H HL++ Sbjct: 62 RTWRNKDKPTNVLSFPAAEQPSQPGVARPLGDVVLAYDTLVRESAEQSKPFEHHFAHLLV 121 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYEV 170 HG LHLLG DH + +A ME LE + L LG+ +PY+ Sbjct: 122 HGTLHLLGQDHETGEAEADAMEALEVAALRALGVPNPYDD 161 >gi|163852621|ref|YP_001640664.1| hypothetical protein Mext_3206 [Methylobacterium extorquens PA1] gi|163664226|gb|ABY31593.1| protein of unknown function UPF0054 [Methylobacterium extorquens PA1] Length = 161 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 88/160 (55%), Gaps = 4/160 (2%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++ IAVE+A W I E +AV ++ VE+S++ D ++ LN Sbjct: 5 EIDIAVEDARWEQAIP---ELEAFTLRAVEAGLAILPDSAAGPVEVSVLLADDATVQELN 61 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +R DKPTNVLSFP A S + LGD+VLAY+ + E+ K FE+H HL++ Sbjct: 62 RTWRNKDKPTNVLSFPAAEQPSQPGLARPLGDVVLAYDTLVRESAEQSKPFEHHFAHLLV 121 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYEV 170 HG LHLLG DH + +A ME LE + L LG+ +PY+ Sbjct: 122 HGTLHLLGQDHETGEAEADAMEALEVAALRALGVPNPYDD 161 >gi|188582642|ref|YP_001926087.1| hypothetical protein Mpop_3401 [Methylobacterium populi BJ001] gi|179346140|gb|ACB81552.1| protein of unknown function UPF0054 [Methylobacterium populi BJ001] Length = 161 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 88/160 (55%), Gaps = 4/160 (2%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++ IAVE+A W + E +AV ++ VE+S++ D ++TLN Sbjct: 5 EIDIAVEDARWEQAVP---DLEAFTLRAVEAGLAILPDSAAGPVEVSVLLADDATVQTLN 61 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +R DKPTNVLSFP A + LGD+VLAY+ + E+ K FE+H HL++ Sbjct: 62 RTWRNKDKPTNVLSFPAADGPLQPGMARPLGDVVLAYDTLLRESAEQSKPFEHHFAHLLV 121 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYEV 170 HG LHLLG DH + +A ME LE + L LGI +PY+ Sbjct: 122 HGTLHLLGQDHETGEAEADAMEALEVAALRTLGIPNPYDD 161 >gi|62290993|ref|YP_222786.1| hypothetical protein BruAb1_2129 [Brucella abortus bv. 1 str. 9-941] gi|260546256|ref|ZP_05821996.1| diacylglycerol kinase [Brucella abortus NCTC 8038] gi|260563055|ref|ZP_05833541.1| diacylglycerol kinase [Brucella melitensis bv. 1 str. 16M] gi|260567377|ref|ZP_05837847.1| diacylglycerol kinase [Brucella suis bv. 4 str. 40] gi|261759087|ref|ZP_06002796.1| diacylglycerol kinase [Brucella sp. F5/99] gi|265999239|ref|ZP_05465467.2| diacylglycerol kinase [Brucella melitensis bv. 2 str. 63/9] gi|297247379|ref|ZP_06931097.1| diacylglycerol kinase [Brucella abortus bv. 5 str. B3196] gi|62197125|gb|AAX75425.1| conserved hypothetical protein TIGR00043 [Brucella abortus bv. 1 str. 9-941] gi|260096363|gb|EEW80239.1| diacylglycerol kinase [Brucella abortus NCTC 8038] gi|260153071|gb|EEW88163.1| diacylglycerol kinase [Brucella melitensis bv. 1 str. 16M] gi|260156895|gb|EEW91975.1| diacylglycerol kinase [Brucella suis bv. 4 str. 40] gi|261739071|gb|EEY27067.1| diacylglycerol kinase [Brucella sp. F5/99] gi|263092809|gb|EEZ16984.1| diacylglycerol kinase [Brucella melitensis bv. 2 str. 63/9] gi|297174548|gb|EFH33895.1| diacylglycerol kinase [Brucella abortus bv. 5 str. B3196] Length = 171 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 80/160 (50%), Positives = 96/160 (60%), Gaps = 5/160 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I +E W DE L +L A A +NL +K ELS+VFTD I+ L Sbjct: 9 IHIDIMIEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDASIQLL 63 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+RG DKPTNVLSFP + MLGDIV+A E +E EA GK ENHL HL+ Sbjct: 64 NGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLV 123 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +HGFLHLLGYDH D++A VME ER IL L I DPY V Sbjct: 124 VHGFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYAV 163 >gi|218531462|ref|YP_002422278.1| hypothetical protein Mchl_3530 [Methylobacterium chloromethanicum CM4] gi|218523765|gb|ACK84350.1| protein of unknown function UPF0054 [Methylobacterium chloromethanicum CM4] Length = 161 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 61/160 (38%), Positives = 87/160 (54%), Gaps = 4/160 (2%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++ IAVE+A W I E +AV ++ VE+S++ D ++ LN Sbjct: 5 EIDIAVEDARWEQAIP---ELEAFTLRAVEAGLAILPDSAAGPVEVSVLLADDATVQALN 61 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +R DKPTNVLSFP A + LGD+VLAY+ + E+ K FE+H HL++ Sbjct: 62 RTWRNKDKPTNVLSFPAAEQPFQPGVARPLGDVVLAYDTLVRESAEQSKPFEHHFAHLLV 121 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYEV 170 HG LHLLG DH + +A ME LE + L LG+ +PY+ Sbjct: 122 HGTLHLLGQDHETGEAEADAMEALEVAALRALGVPNPYDD 161 >gi|240139954|ref|YP_002964431.1| putative metalloprotease [Methylobacterium extorquens AM1] gi|240009928|gb|ACS41154.1| putative metalloprotease [Methylobacterium extorquens AM1] Length = 161 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 88/160 (55%), Gaps = 4/160 (2%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++ IAVE+A W I E +AV ++ VE+S++ D ++ LN Sbjct: 5 EIDIAVEDARWEQAIP---ELEAFTLRAVEAGLAILPDSAAGPVEVSVLLADDATVQALN 61 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +R DKPTNVLSFP A S + LGD+VLAY+ + E+ K FE+H HL++ Sbjct: 62 RTWRNKDKPTNVLSFPAAEQPSQPGLARPLGDVVLAYDTLVRESAEQSKPFEHHFAHLLV 121 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYEV 170 HG LHLLG DH + +A ME LE + L LG+ +PY+ Sbjct: 122 HGTLHLLGQDHETGEAEADAMEALEVAALRALGVPNPYDD 161 >gi|260461991|ref|ZP_05810236.1| protein of unknown function UPF0054 [Mesorhizobium opportunistum WSM2075] gi|259032238|gb|EEW33504.1| protein of unknown function UPF0054 [Mesorhizobium opportunistum WSM2075] Length = 166 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 72/157 (45%), Positives = 91/157 (57%), Gaps = 6/157 (3%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++ I++E W E L L + A A + + G ELS+VF+D I TLN Sbjct: 15 EIDISIEAGDWPAEASLARLVDRAVAVAFAETGAAG------QSELSIVFSDDAHIRTLN 68 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 ++RG DKPTNVLSFP DG MLGDIVLA E + EA + K ENH+ HL+I Sbjct: 69 ADWRGKDKPTNVLSFPAFPHVKDGPLPPMLGDIVLAAETVAREAALEDKPLENHITHLVI 128 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HG LHL+GYDH D +A ME +ER+ L L I DPY Sbjct: 129 HGLLHLMGYDHETDTEAEAMEAVERAALARLAIPDPY 165 >gi|209883672|ref|YP_002287529.1| putative metalloprotease [Oligotropha carboxidovorans OM5] gi|209871868|gb|ACI91664.1| putative metalloprotease [Oligotropha carboxidovorans OM5] Length = 167 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 69/158 (43%), Positives = 88/158 (55%), Gaps = 8/158 (5%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 + + W E ++ + A A + + + EL+++ TD I LN E Sbjct: 8 DVLIAADCWKAEAEAESIVQNAIATAATFVT-----LPAEATELAVMLTDDASIRDLNRE 62 Query: 74 YRGIDKPTNVLSFPTAFASSDGCS---SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 +RG DKPTNVLSFP A + LMLGDI +AYE EA K F +HL HL Sbjct: 63 WRGQDKPTNVLSFPAAPLPGNTTQDGVPLMLGDIAIAYETTRREAETDAKPFPHHLSHLA 122 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HGFLHLLGYDH++D +A VME LER IL LGI DPY Sbjct: 123 VHGFLHLLGYDHIEDSEAEVMEELERRILAKLGIADPY 160 >gi|254503442|ref|ZP_05115593.1| conserved hypothetical protein TIGR00043, putative [Labrenzia alexandrii DFL-11] gi|222439513|gb|EEE46192.1| conserved hypothetical protein TIGR00043, putative [Labrenzia alexandrii DFL-11] Length = 173 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 72/156 (46%), Positives = 89/156 (57%), Gaps = 5/156 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + IAVE W DE L L + A A+ + E+SL+FT+ I+ LN Sbjct: 13 IDIAVEAGDWPDETALIKLAQTAIAAALKGADLEVL----EKAEVSLLFTNDEGIQKLNH 68 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 ++R DKPTNVLSFP D L LGDIV AYE + EA LG EF NHL HL +H Sbjct: 69 QWRDKDKPTNVLSFPGNDPQDDVYGPL-LGDIVFAYETVAKEAEELGIEFNNHLTHLTVH 127 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 G LHL YDH + +A +ME LE +IL LGI+DPY Sbjct: 128 GLLHLFDYDHQEKDEAELMESLETAILAGLGIDDPY 163 >gi|306842736|ref|ZP_07475378.1| conserved hypothetical protein [Brucella sp. BO2] gi|306287080|gb|EFM58585.1| conserved hypothetical protein [Brucella sp. BO2] Length = 158 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 79/154 (51%), Positives = 93/154 (60%), Gaps = 5/154 (3%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 +E W DE L +L A A +NL +K ELS+VFTD I+ LN E+RG Sbjct: 2 IEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDASIQVLNGEWRG 56 Query: 77 IDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 DKPTNVLSFP + MLGDIV+A E +E EA GK ENHL HL++HGFLH Sbjct: 57 KDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLVVHGFLH 116 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 LLGYDH D++A VME ER IL L I DPY V Sbjct: 117 LLGYDHETDEEAEVMEAREREILHALAIPDPYAV 150 >gi|23503004|ref|NP_699131.1| hypothetical protein BR2156 [Brucella suis 1330] gi|82700902|ref|YP_415476.1| hypothetical protein BAB1_2156 [Brucella melitensis biovar Abortus 2308] gi|148560239|ref|YP_001259950.1| hypothetical protein BOV_2068 [Brucella ovis ATCC 25840] gi|256370551|ref|YP_003108062.1| metal-dependent hydrolase [Brucella microti CCM 4915] gi|23349044|gb|AAN31046.1| conserved hypothetical protein TIGR00043 [Brucella suis 1330] gi|82617003|emb|CAJ12112.1| Protein of unknown function UPF0054 [Brucella melitensis biovar Abortus 2308] gi|148371496|gb|ABQ61475.1| conserved hypothetical protein TIGR00043 [Brucella ovis ATCC 25840] gi|256000714|gb|ACU49113.1| metal-dependent hydrolase [Brucella microti CCM 4915] Length = 158 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 79/154 (51%), Positives = 93/154 (60%), Gaps = 5/154 (3%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 +E W DE L +L A A +NL +K ELS+VFTD I+ LN E+RG Sbjct: 2 IEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDASIQLLNGEWRG 56 Query: 77 IDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 DKPTNVLSFP + MLGDIV+A E +E EA GK ENHL HL++HGFLH Sbjct: 57 KDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLVVHGFLH 116 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 LLGYDH D++A VME ER IL L I DPY V Sbjct: 117 LLGYDHETDEEAEVMEAREREILHALAIPDPYAV 150 >gi|328545926|ref|YP_004306035.1| metalloprotease [polymorphum gilvum SL003B-26A1] gi|326415666|gb|ADZ72729.1| Putative metalloprotease [Polymorphum gilvum SL003B-26A1] Length = 178 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 72/161 (44%), Positives = 87/161 (54%), Gaps = 5/161 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L + +AVE W D L L A A N + ELSLVF D I L Sbjct: 16 LQIDLAVEAGDWPDGARLEDLTRAAVAAAFRNAPLRTLPGS----ELSLVFLDDDGIRAL 71 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R DKPTNVLSF + + G MLGDIVL+ + + EA G F +H HL+ Sbjct: 72 NRSWRNKDKPTNVLSF-SGGDAVGGRYGPMLGDIVLSSDTLAREAKEQGISFCDHFSHLV 130 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHL GYDH + +A +MEGLER IL DLGI DPY D Sbjct: 131 VHGLLHLFGYDHQIEAEAEIMEGLERRILADLGIADPYAGD 171 >gi|316931569|ref|YP_004106551.1| hypothetical protein Rpdx1_0174 [Rhodopseudomonas palustris DX-1] gi|315599283|gb|ADU41818.1| protein of unknown function UPF0054 [Rhodopseudomonas palustris DX-1] Length = 167 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 ++ +E W E + A + + EL+++ TD I LN Sbjct: 10 EVVIEADCWQAESSAEAVVLRAIETAAEAIDAGTGG-----AELAVMLTDDEHIRALNAS 64 Query: 74 YRGIDKPTNVLSFPT-AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +RG DKPTNVLSFP + MLGDI +AY+ + EA+ GK F +HL HL +H Sbjct: 65 FRGKDKPTNVLSFPAAQPEVQPDGAPRMLGDIAIAYQTVRREADDEGKPFGHHLSHLAVH 124 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 GFLHL+GYDH D+ A ME ER+IL LGI DPY Sbjct: 125 GFLHLVGYDHETDQQADEMEDAERTILARLGIPDPY 160 >gi|27375904|ref|NP_767433.1| hypothetical protein bll0793 [Bradyrhizobium japonicum USDA 110] gi|46577464|sp|Q89W99|RRMF_BRAJA RecName: Full=Probable rRNA maturation factor gi|27349042|dbj|BAC46058.1| bll0793 [Bradyrhizobium japonicum USDA 110] Length = 183 Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats. Identities = 70/172 (40%), Positives = 93/172 (54%), Gaps = 10/172 (5%) Query: 2 SVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVF 61 ++ NLP ++ V W E + + A A ++ E++++ Sbjct: 14 TMSHPNLPM--TEVLVVADCWQREPDSEAVIQRAVAAAAESVDEDVA-----EAEVAVML 66 Query: 62 TDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 TD I TLN +RGIDKPTNVLSFP +G + MLGDI +AYE + EA+ Sbjct: 67 TDDAGIRTLNSNWRGIDKPTNVLSFPALQPEGEWKEGDAPRMLGDIAIAYETMRREADEE 126 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 K F++HL HL +HGFLHL+GYDH +D DA ME LE IL LGI DPY Sbjct: 127 KKPFDHHLSHLAVHGFLHLIGYDHENDDDAEEMEALETQILAHLGIPDPYAD 178 >gi|56708799|ref|YP_164840.1| hypothetical protein SPOA0008 [Ruegeria pomeroyi DSS-3] gi|59799077|sp|Q5LLL4|RRMF_SILPO RecName: Full=Probable rRNA maturation factor gi|56680484|gb|AAV97149.1| conserved hypothetical protein TIGR00043 [Ruegeria pomeroyi DSS-3] Length = 165 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 20/173 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L + +E+ W L L + + ++ + + + E+SL+ D RI L Sbjct: 1 MTLDLTLEDPRW---TILPPLADRAISATLAQM-----GLDPELCEISLLGCDDARITAL 52 Query: 71 NFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N E+R PTNVLS+P D ++ LGDI +A++ + EA+ Sbjct: 53 NAEFREKPSPTNVLSWPAEDLAAETPGGTPLAPEPDFTGAVPLGDIAIAFDTCQREADAA 112 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK +H+ HLI+HG LHLLGYDH+ D+DA +MEGLE IL +LGI+DPY ++ Sbjct: 113 GKPIADHVTHLIVHGLLHLLGYDHIRDEDATLMEGLETRILGNLGIDDPYTME 165 >gi|288942384|ref|YP_003444624.1| hypothetical protein Alvin_2683 [Allochromatium vinosum DSM 180] gi|288897756|gb|ADC63592.1| protein of unknown function UPF0054 [Allochromatium vinosum DSM 180] Length = 178 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 65/165 (39%), Positives = 86/165 (52%), Gaps = 10/165 (6%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+A E+A L E A++ + + EL++ D + Sbjct: 5 LELDLQVATEDADHP----LPPRFERWVRAALAQVDPP---FQRARAELTIRLVDPDESQ 57 Query: 69 TLNFEYRGIDKPTNVLSFPTAFAS---SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN +YRG DKPTNVLSFP +D +LGD+V+ E++ EA GK E H Sbjct: 58 ALNLQYRGRDKPTNVLSFPFEAPPGLDADDPIHDLLGDLVICTEVVRREALEQGKTPEAH 117 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 H+++HG LHLL YDHV D +A VME LE +IL LG PYE Sbjct: 118 WAHMVVHGVLHLLDYDHVTDAEAAVMETLETAILGGLGFPPPYED 162 >gi|260431175|ref|ZP_05785146.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415003|gb|EEX08262.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] Length = 164 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 67/172 (38%), Positives = 96/172 (55%), Gaps = 20/172 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++L+I+VE++ W L L + ++ L + ++ E+S++ D RI L Sbjct: 1 MNLEISVEDSRWQR---LEELSRRAVSATLAYL-----RMNPDLCEVSILGCDDSRIAEL 52 Query: 71 NFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N E+RG PTNVLS+P D ++LGDI ++Y+ EAN Sbjct: 53 NNEFRGKPAPTNVLSWPAEDLAPEEPGATPPLPEPDFTGEIVLGDIAISYDTCLREANEA 112 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 GK ++H+VHLI+HG LHLLGYDHV D DA +MEG E IL LGI++PY V Sbjct: 113 GKSMDDHVVHLIVHGVLHLLGYDHVRDPDATLMEGCEIEILGKLGIDNPYNV 164 >gi|23015403|ref|ZP_00055180.1| COG0319: Predicted metal-dependent hydrolase [Magnetospirillum magnetotacticum MS-1] Length = 164 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 62/161 (38%), Positives = 91/161 (56%), Gaps = 7/161 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+ + ++ W D + ++ + E +VELS+V D ++ L Sbjct: 5 IDIAVDIQYPAWTDVLPDAE----ARCGRLAATALGAVDLPEGVVELSIVLADDATVQGL 60 Query: 71 NFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 N ++RG D+PTNVLSF + A + L+LGD++LAYE EA GK +H Sbjct: 61 NRDWRGKDQPTNVLSFASLDDEDAPLVPGAPLLLGDVILAYETCAAEAKDQGKTLADHFG 120 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL++HG LHLLGYDH+DD++A ME LE ++L LGI DPY Sbjct: 121 HLVVHGVLHLLGYDHMDDEEAAEMESLETTLLAALGIADPY 161 >gi|315122127|ref|YP_004062616.1| hypothetical protein CKC_01885 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495529|gb|ADR52128.1| hypothetical protein CKC_01885 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 163 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 112/166 (67%), Positives = 136/166 (81%), Gaps = 3/166 (1%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 +N P+L+L IAVE+ LWG++ L LCEVV AKA+S L SK F E+ +E+S VFTDS+ Sbjct: 1 MNPPKLNLHIAVESELWGEDFDLSVLCEVVLAKAISFLTSKKDFSLED-IEVSFVFTDSN 59 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 RI+ LN +YRGIDKPTNVLSFP+ +S S MLGDIVLAYE++E EANVLGK+F++H Sbjct: 60 RIKELNAQYRGIDKPTNVLSFPSVLSSE--YSGAMLGDIVLAYEVMEAEANVLGKKFKDH 117 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 LVHLIIHGFLHLL YDHVDD+DA +MEGLERSIL DLGI+DPYE+D Sbjct: 118 LVHLIIHGFLHLLRYDHVDDEDARLMEGLERSILADLGIDDPYELD 163 >gi|126735011|ref|ZP_01750757.1| hypothetical protein RCCS2_14079 [Roseobacter sp. CCS2] gi|126715566|gb|EBA12431.1| hypothetical protein RCCS2_14079 [Roseobacter sp. CCS2] Length = 166 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 62/171 (36%), Positives = 89/171 (52%), Gaps = 18/171 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + VE+ WGD + L ++ A+ L + E+S++ D RI L Sbjct: 1 MTVDCVVEDPRWGD---INALAQIATDAALERLGLESSVF-----EISVLACDDARIAVL 52 Query: 71 NFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 N +RG KPTNVLS+P+ + LGDI +A++ EA GK Sbjct: 53 NEGFRGKPKPTNVLSWPSDERAAAIDGEMPLAPRPGPDNELGDIAIAFDTCTREAAEAGK 112 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++H +HL++HG LHLLG+DH D+DA +MEGLE IL LGI DPY + Sbjct: 113 TMQDHTIHLLVHGTLHLLGFDHERDRDATLMEGLETEILGKLGIPDPYRDE 163 >gi|159043564|ref|YP_001532358.1| hypothetical protein Dshi_1015 [Dinoroseobacter shibae DFL 12] gi|189038542|sp|A8LSE3|RRMF_DINSH RecName: Full=Probable rRNA maturation factor gi|157911324|gb|ABV92757.1| protein of unknown function UPF0054 [Dinoroseobacter shibae DFL 12] Length = 181 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 63/170 (37%), Positives = 84/170 (49%), Gaps = 18/170 (10%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++IA E+A W D + L L + L + E+S++ D RI TLN Sbjct: 14 TVEIATEDAAW-DALDLEALAGRAVDATLVAL-----DLPPAAFEVSILACDDARIATLN 67 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLML------------GDIVLAYEIIEIEANVLG 119 E+RG PTNVLS+P + D GD+ LA+ EA G Sbjct: 68 GEFRGKPTPTNVLSWPAEDRAPDTPGGAPHLPDPGDPMAAELGDLALAHGTCAREAAEAG 127 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 K +H+ HLI+HG LHLLG+DH D DA MEGLE IL+ L + +PYE Sbjct: 128 KPLADHVTHLIVHGTLHLLGFDHETDADAARMEGLEVKILQTLNMANPYE 177 >gi|323138530|ref|ZP_08073598.1| protein of unknown function UPF0054 [Methylocystis sp. ATCC 49242] gi|322396164|gb|EFX98697.1| protein of unknown function UPF0054 [Methylocystis sp. ATCC 49242] Length = 172 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 64/157 (40%), Positives = 83/157 (52%), Gaps = 7/157 (4%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 D+ I + W L L + +++ +K ELS+ F D I LN Sbjct: 4 DIDILISTPAWESFEGLEALAQDCVRASLAESGAKLA----PGCELSVNFCDDAEIRELN 59 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 E+RG DKPTNVLSFPT + +LGDIV+AYE + EA K +H H++I Sbjct: 60 AEWRGKDKPTNVLSFPT---PGTLANRPLLGDIVIAYETVAREAGEQAKTLRDHTAHMVI 116 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HGFLHL+GYDH +A ME LER I LG+ DPY Sbjct: 117 HGFLHLIGYDHETSAEAETMEALERRIAAGLGLRDPY 153 >gi|84687997|ref|ZP_01015860.1| hypothetical protein 1099457000237_RB2654_18208 [Maritimibacter alkaliphilus HTCC2654] gi|84663978|gb|EAQ10479.1| hypothetical protein RB2654_18208 [Rhodobacterales bacterium HTCC2654] Length = 162 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 63/165 (38%), Positives = 87/165 (52%), Gaps = 15/165 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ W + L L E A ++ L G E++L+ D RI L Sbjct: 1 MIVDVVYEDDRWV-ALGLEALAETACAATLAKLGIAG-------AEIALLACDDDRIAAL 52 Query: 71 NFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 N E+R PTNVLS+P+ + LGDI +AY+ EA GK Sbjct: 53 NTEFRDKPTPTNVLSWPSEERGADQPGGDPYPPEDMELGDIAIAYDTCAREAAEAGKPMV 112 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +H+ HL++HG LHLLGYDH+DDKDA +MEGLE IL +G+ DPY Sbjct: 113 DHVTHLVVHGTLHLLGYDHIDDKDAALMEGLETEILGKMGLADPY 157 >gi|152985334|ref|YP_001346512.1| putative metalloprotease [Pseudomonas aeruginosa PA7] gi|150960492|gb|ABR82517.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 168 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 61/163 (37%), Positives = 79/163 (48%), Gaps = 14/163 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+A + A E R CE+ + EL++ D Sbjct: 11 LELDLQVASDAADLPSEAQFRAWCELALRQRA-------------ESELTIRLVDEAEGL 57 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVLSFP + +LGD+V+ ++ EA K + H H Sbjct: 58 ELNSTYRHKDYATNVLSFPAD-VPEEFLDIPLLGDLVICAPVVAREAREQHKPLQAHWAH 116 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 L+IHG LHLLGYDH+DD +A ME LER +L +LG DPY D Sbjct: 117 LVIHGCLHLLGYDHIDDAEAEEMETLERELLAELGHPDPYACD 159 >gi|308050554|ref|YP_003914120.1| hypothetical protein Fbal_2844 [Ferrimonas balearica DSM 9799] gi|307632744|gb|ADN77046.1| protein of unknown function UPF0054 [Ferrimonas balearica DSM 9799] Length = 148 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 64/161 (39%), Positives = 86/161 (53%), Gaps = 15/161 (9%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVE + L + + A EL++ TD + Sbjct: 1 MELDLQLAVEADNLPSQAQLESWAALALA-------------DRPDAELTIRITDEAESQ 47 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN +YRG DKPTNVLSFP + G +LGD+V+ ++ EA K +H H Sbjct: 48 QLNRDYRGKDKPTNVLSFPFE--APPGIELPLLGDLVICAAVVAREAVEQEKAPMDHWAH 105 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 ++IHG LHL+GYDH+DD+DA ME LER +L LGI DPY+ Sbjct: 106 MVIHGCLHLIGYDHIDDEDAEEMESLERQLLAQLGIADPYQ 146 >gi|99080031|ref|YP_612185.1| hypothetical protein TM1040_0190 [Ruegeria sp. TM1040] gi|99036311|gb|ABF62923.1| protein of unknown function UPF0054 [Ruegeria sp. TM1040] Length = 194 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 63/174 (36%), Positives = 92/174 (52%), Gaps = 18/174 (10%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 R+ L + +E+A W D L + + ++ L +++ E++++ D RI Sbjct: 24 RMILDVVIEDARW-DAAALEKQAQEAVSATLAYL-----ELEDEDWEVTVLGCDDARIAD 77 Query: 70 LNFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANV 117 LN E+R KPTNVLS+P D LGDI ++Y+ EAN+ Sbjct: 78 LNAEFREKPKPTNVLSWPAQELAAAQDGGQPTPPEVDFMGDAALGDIAISYDTCVKEANL 137 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K E+H+ HL++HG LHLLGYDH+ D DA +ME LE IL LGI DPY ++ Sbjct: 138 AHKSREDHVRHLLVHGTLHLLGYDHIRDGDATIMETLEVGILGKLGIPDPYIIE 191 >gi|89053194|ref|YP_508645.1| hypothetical protein Jann_0703 [Jannaschia sp. CCS1] gi|122499500|sp|Q28UJ2|RRMF_JANSC RecName: Full=Probable rRNA maturation factor gi|88862743|gb|ABD53620.1| protein of unknown function UPF0054 [Jannaschia sp. CCS1] Length = 160 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 14/166 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ I ++ W D + L L + +++L + + LS++ D RI TL Sbjct: 1 MEIDILIDAPHW-DALDLCGLAQSACVATLTDL-----SLDPDDFALSILACDDARIATL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLML--------GDIVLAYEIIEIEANVLGKEF 122 N ++RG PTNVLS+P+ + + ++ GD+ LA+E EA GK Sbjct: 55 NTQFRGKPTPTNVLSWPSEDRAPETPGAMPHLSDLAAELGDLALAFETCAREAADGGKPL 114 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +H+ HLI+HG LH LG+DH D DA +ME LE IL LG+ DPY Sbjct: 115 PDHISHLIVHGLLHCLGFDHETDADADLMERLETRILARLGVPDPY 160 >gi|146337217|ref|YP_001202265.1| putative metal-dependent hydrolase [Bradyrhizobium sp. ORS278] gi|146190023|emb|CAL74015.1| conserved hypothetical protein; putative metal-dependent hydrolase [Bradyrhizobium sp. ORS278] Length = 180 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 65/160 (40%), Positives = 86/160 (53%), Gaps = 8/160 (5%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 ++ V W D+ + + A + + E++++ TD I TLN Sbjct: 21 EVIVAADCWQDQPDAEDVIQRAIIAAAEMVDADVG-----DAEIAVMLTDDGGIRTLNSN 75 Query: 74 YRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 +RGIDKPTNVLSFP + D + MLGDI +AYE + EA+ K F +HL HL Sbjct: 76 WRGIDKPTNVLSFPALQPTGPRGDEDAPRMLGDIAIAYETMRREADEEQKPFAHHLSHLT 135 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +HGFLHL+GYDH D +A ME LE IL LGI DPY Sbjct: 136 VHGFLHLIGYDHETDDEAEEMEALETEILAHLGIPDPYAD 175 >gi|154245756|ref|YP_001416714.1| hypothetical protein Xaut_1812 [Xanthobacter autotrophicus Py2] gi|154159841|gb|ABS67057.1| protein of unknown function UPF0054 [Xanthobacter autotrophicus Py2] Length = 176 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 65/156 (41%), Positives = 85/156 (54%), Gaps = 4/156 (2%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + + VE W EV+ +A ++ E+++ TD RI LN Sbjct: 20 IDVLVEADGWSA----LPDAEVICVRAAQAALAACGDEVPEPCEVAITLTDDARIRVLNR 75 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 E+RG DK TNVLSFP D + LGDI++A E + EA K +HL HL++H Sbjct: 76 EWRGKDKATNVLSFPQPDLPDDVDAPQPLGDIIVALETLTGEARAEDKTAGHHLAHLVVH 135 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 G LHLLGYDH+DD +A ME LER IL LGI+DPY Sbjct: 136 GTLHLLGYDHIDDTEAEEMEALERRILAGLGIDDPY 171 >gi|86136019|ref|ZP_01054598.1| hypothetical protein MED193_17889 [Roseobacter sp. MED193] gi|85826893|gb|EAQ47089.1| hypothetical protein MED193_17889 [Roseobacter sp. MED193] Length = 170 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 66/173 (38%), Positives = 92/173 (53%), Gaps = 18/173 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L+I +E++ W E L L A+ + + + E++L+ D +I L Sbjct: 1 MALEITIEDSRWQ-EAGLEALAHQAVGAALGH-----FGLDPEDCEIALLACDDDQIAGL 54 Query: 71 NFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N E+R PTNVLS+P +D + LGDI +AY+ EA+ Sbjct: 55 NAEFREKPVPTNVLSWPAEDLAASEPGGQPAVPEADFTGEIPLGDIAIAYDTCLREADAA 114 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K +HL HLI+HG LHLLGYDH+ D DA VMEGLE IL +LG++DPY VD Sbjct: 115 NKPLADHLRHLIVHGVLHLLGYDHISDLDATVMEGLEVEILGNLGLDDPYTVD 167 >gi|115522233|ref|YP_779144.1| hypothetical protein RPE_0204 [Rhodopseudomonas palustris BisA53] gi|122298061|sp|Q07V70|RRMF_RHOP5 RecName: Full=Probable rRNA maturation factor gi|115516180|gb|ABJ04164.1| protein of unknown function UPF0054 [Rhodopseudomonas palustris BisA53] Length = 172 Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 88/159 (55%), Gaps = 7/159 (4%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 ++ + W E + A + + ++ EL+++ +D + TLN Sbjct: 9 EVLIVADCWQAESEAEAVVLRAIEAAAAMVDAETA-----DAELAVMLSDDAGVRTLNAN 63 Query: 74 YRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +RG+DKPTNVLSFP S+ + MLGDI +AYE EA+ GK F++HL HL + Sbjct: 64 WRGLDKPTNVLSFPALQPSATMPDDAPRMLGDIAIAYETTRREADDEGKPFDHHLSHLAV 123 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HGFLHL+GYDH + +A ME LER IL LG+ DPY Sbjct: 124 HGFLHLVGYDHETESEAEAMEQLERRILAQLGVPDPYAD 162 >gi|92115656|ref|YP_575385.1| hypothetical protein Nham_0023 [Nitrobacter hamburgensis X14] gi|122418988|sp|Q1QS72|RRMF_NITHX RecName: Full=Probable rRNA maturation factor gi|91798550|gb|ABE60925.1| protein of unknown function UPF0054 [Nitrobacter hamburgensis X14] Length = 190 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 84/158 (53%), Gaps = 8/158 (5%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 ++ V W E + A + EL+++ TD I TLN Sbjct: 31 EVLVVAECWRAEAGAEAIIHRAVETAAGMV-----DTDTGDAELAIMLTDDAGIRTLNAN 85 Query: 74 YRGIDKPTNVLSFPTAFA---SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 +RGIDKPTNVLSFP S + MLGDI +AYE + EA K F++HL HL Sbjct: 86 WRGIDKPTNVLSFPALQPTGAPSPDDAPRMLGDIAIAYETLRREACDEHKPFDHHLSHLT 145 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHGFLHL+GYDH D++A ME LER IL LGI DPY Sbjct: 146 IHGFLHLIGYDHETDEEAGEMENLERKILARLGIPDPY 183 >gi|254475005|ref|ZP_05088391.1| diacyglycerol kinase [Ruegeria sp. R11] gi|214029248|gb|EEB70083.1| diacyglycerol kinase [Ruegeria sp. R11] Length = 189 Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 67/173 (38%), Positives = 90/173 (52%), Gaps = 18/173 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L I++E W E L L +S+ + + E+S++ D RI L Sbjct: 14 MGLDISIEEDRWL-ETDLEPLVIEATEAVLSH-----FRLDPEACEISVLACDDARIAVL 67 Query: 71 NFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N ++R KPTNVLS+P +D + LGDI +AYE EA Sbjct: 68 NEDFRQKAKPTNVLSWPAEELAAEEPGGTPMAPEADFTGEIPLGDIAIAYETCAREAQEA 127 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK +HL HLI+HG LHLLGYDH+ D DA +MEGLE IL +GI+DPY V+ Sbjct: 128 GKPLADHLRHLIVHGLLHLLGYDHIRDPDATLMEGLEVEILGKMGIDDPYTVE 180 >gi|75674215|ref|YP_316636.1| hypothetical protein Nwi_0016 [Nitrobacter winogradskyi Nb-255] gi|123614405|sp|Q3SWQ7|RRMF_NITWN RecName: Full=Probable rRNA maturation factor gi|74419085|gb|ABA03284.1| Protein of unknown function [Nitrobacter winogradskyi Nb-255] Length = 190 Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 83/158 (52%), Gaps = 8/158 (5%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 +I V W E + A A + EL+++ TD I TLN Sbjct: 31 EILVVADCWRAEAGAEAVIHRAIATAAGMVDK-----DTGDAELAIMLTDDAGIRTLNAN 85 Query: 74 YRGIDKPTNVLSFPTAFAS---SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 +RG+DKPTNVLSFP + MLGDI +AYE + EA K F++HL HL Sbjct: 86 WRGLDKPTNVLSFPALQPTGPCLPDDPPRMLGDIAIAYETLRREAGDERKTFDHHLSHLA 145 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HGFLHL+GYDH D +A ME LER IL LGI DPY Sbjct: 146 VHGFLHLIGYDHETDGEAEEMESLERQILAQLGIPDPY 183 >gi|224827049|ref|ZP_03700146.1| protein of unknown function UPF0054 [Lutiella nitroferrum 2002] gi|224600715|gb|EEG06901.1| protein of unknown function UPF0054 [Lutiella nitroferrum 2002] Length = 168 Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 54/163 (33%), Positives = 69/163 (42%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 L L I + A L+ V ++SL+ + Sbjct: 17 LELTLDIRSDAADLPRAADLQRWARAALQADVQK------------AQISLLLVEGEEGR 64 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN +YRG D TNVLSF + L GD+VL ++ EA H H Sbjct: 65 ALNRDYRGKDYATNVLSFALNEGETLPGMPLF-GDLVLCVPVVAREAAEQDTPLAAHYAH 123 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 L +HG LHL GYDH DD +A VME LE +IL LG DPY + Sbjct: 124 LTVHGMLHLQGYDHEDDDEAEVMEALETAILAKLGYPDPYAAE 166 >gi|91974722|ref|YP_567381.1| hypothetical protein RPD_0240 [Rhodopseudomonas palustris BisB5] gi|123735849|sp|Q13EK9|RRMF_RHOPS RecName: Full=Probable rRNA maturation factor gi|91681178|gb|ABE37480.1| protein of unknown function UPF0054 [Rhodopseudomonas palustris BisB5] Length = 195 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 65/163 (39%), Positives = 86/163 (52%), Gaps = 11/163 (6%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 ++ + W E ++ A + + + EL+++ TD + LN Sbjct: 33 EVVIAADCWQAEASAESVVLRAIEAAATMIDA-----DTGDAELAVMLTDDDGVRALNAS 87 Query: 74 YRGIDKPTNVLSFPTAFAS------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 YRGIDKPTNVLSFP G + MLGDI +AY+ + EA+ GK F +HL Sbjct: 88 YRGIDKPTNVLSFPAPQPDYQDACQDSGGAPQMLGDIAIAYQTVRREADDEGKPFAHHLS 147 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HL +HGFLHL+GYDH D +A ME ERSIL LGI DPY Sbjct: 148 HLAVHGFLHLVGYDHETDAEAETMESTERSILAGLGIPDPYAD 190 >gi|170747071|ref|YP_001753331.1| hypothetical protein Mrad2831_0637 [Methylobacterium radiotolerans JCM 2831] gi|170653593|gb|ACB22648.1| protein of unknown function UPF0054 [Methylobacterium radiotolerans JCM 2831] Length = 159 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 90/158 (56%), Gaps = 4/158 (2%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++ +AVE+A W + E + +AV ++ + VE+S++ TD + LN Sbjct: 4 EIDLAVEDARWETAV---ADLEALVTRAVEAGLAVAPEKPDGPVEVSVLLTDDAAVRELN 60 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +RG DKPTNVLSFP A +++ LGD+VLAYE + E+ K +NHL HL++ Sbjct: 61 RTWRGKDKPTNVLSFPAAPQPRHAGTAVPLGDVVLAYETLVRESAEQSKPLQNHLAHLLV 120 Query: 132 HGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPY 168 HG LH LG DH + +A ME LE + L LGI DPY Sbjct: 121 HGTLHCLGQDHEIGETEADAMEALEVAALATLGIPDPY 158 >gi|121601777|ref|YP_989494.1| hypothetical protein BARBAKC583_1245 [Bartonella bacilliformis KC583] gi|145572753|sp|A1UU41|RRMF_BARBK RecName: Full=Probable rRNA maturation factor gi|120613954|gb|ABM44555.1| conserved hypothetical protein TIGR00043 [Bartonella bacilliformis KC583] Length = 158 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 69/159 (43%), Positives = 94/159 (59%), Gaps = 5/159 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + + +ENA WGDE L T+ E + L + + ELSL+FT++ R+ Sbjct: 1 MISINMTIENAEWGDEKILYTITEKALIATIDRL-----SLTQVTSELSLLFTNNMRMAQ 55 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N ++R +KPTNVLSFP + MLGDIVLA E I EA GK F +HL H+ Sbjct: 56 INTQWRNKNKPTNVLSFPAFPLKAGQNPGPMLGDIVLARETIVYEAEEEGKSFHDHLTHM 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 I+HG LHLLGYDH D +A ME LE+ IL+ + I +PY Sbjct: 116 IVHGILHLLGYDHETDDEAYQMEELEKEILQKIAIKNPY 154 >gi|302185145|ref|ZP_07261818.1| putative metalloprotease [Pseudomonas syringae pv. syringae 642] Length = 166 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 86/164 (52%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQ+A E + DE R CE+ + + EL++ D Sbjct: 1 MLELDLQVASETSA-PDEAQFRLWCEMGLRQ------------RSADSELTIRLVDESEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R + TNVLSFP D +LGD+V+ ++ EA GK + H Sbjct: 48 RELNHTWRHKNYATNVLSFPAD-VPDDMLDIPLLGDLVICVPVVNREAVEQGKSVDAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 107 HMVIHGCLHLLGYDHIDDEEADEMEALERTLLEELGYPDPYADD 150 >gi|304393796|ref|ZP_07375721.1| putative metalloprotease [Ahrensia sp. R2A130] gi|303293995|gb|EFL88370.1| putative metalloprotease [Ahrensia sp. R2A130] Length = 172 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 66/161 (40%), Positives = 89/161 (55%), Gaps = 6/161 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + +E WGDE L TL E A A +++ E S +FT+ + Sbjct: 1 MIAFDLTIEGGEWGDEAALATLIERTLATAAPHIVD----GLPEDAETSFLFTNDEAVRV 56 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN ++RG DKPTNVLSF G + +LGDI +A E + EA K F+NHL H+ Sbjct: 57 LNRDWRGQDKPTNVLSFAANEG--GGPVTPLLGDIAIAQETVAREAEEQAKSFDNHLTHM 114 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 I+HG LHL+G+DH +D +A ME LER IL DL + DPY Sbjct: 115 IVHGLLHLIGHDHENDTEADEMEALERRILADLSMADPYAD 155 >gi|304395672|ref|ZP_07377555.1| protein of unknown function UPF0054 [Pantoea sp. aB] gi|304356966|gb|EFM21330.1| protein of unknown function UPF0054 [Pantoea sp. aB] Length = 157 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 89/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A EN + +L + AV+ + E+++ D Sbjct: 1 MSEVILDLQVACENTA---NLPDESLFHRWLSAAVTPFQPES--------EVTVRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA GK E H Sbjct: 50 ESHELNLTYRGKDKPTNVLSFPFE--APPGIELPLLGDLIICRQVVEQEAAEQGKSVEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A MEGLE I+ LG DPY + Sbjct: 108 WAHMVVHGTLHLLGYDHIEDDEADEMEGLETEIMLALGYPDPYISE 153 >gi|293397292|ref|ZP_06641564.1| metal-dependent hydrolase [Serratia odorifera DSM 4582] gi|291420210|gb|EFE93467.1| metal-dependent hydrolase [Serratia odorifera DSM 4582] Length = 157 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQIA E+A L E F + + ++ + + E+++ D Sbjct: 1 MSQVILDLQIACEHAN-----GLPD--EAAFQRWLEGVLPQF----QAEAEVTIRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA GK E H Sbjct: 50 ESHQLNLTYRGKDKPTNVLSFPFE--APPGIELPLLGDLIICRQVVEQEAVEQGKALEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I++ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMQGLGYQDPYLAE 153 >gi|171473045|sp|A6V0C7|RRMF_PSEA7 RecName: Full=Probable rRNA maturation factor Length = 160 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 61/163 (37%), Positives = 79/163 (48%), Gaps = 14/163 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+A + A E R CE+ + EL++ D Sbjct: 3 LELDLQVASDAADLPSEAQFRAWCELALRQRA-------------ESELTIRLVDEAEGL 49 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVLSFP + +LGD+V+ ++ EA K + H H Sbjct: 50 ELNSTYRHKDYATNVLSFPAD-VPEEFLDIPLLGDLVICAPVVAREAREQHKPLQAHWAH 108 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 L+IHG LHLLGYDH+DD +A ME LER +L +LG DPY D Sbjct: 109 LVIHGCLHLLGYDHIDDAEAEEMETLERELLAELGHPDPYACD 151 >gi|90420540|ref|ZP_01228447.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] gi|90335268|gb|EAS49021.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] Length = 203 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 60/163 (36%), Positives = 89/163 (54%), Gaps = 6/163 (3%) Query: 11 LDLQIAVENALWGDEI--HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 L + + VE+ W D + + F+ A + L G V E+SL D + Sbjct: 18 LTVALTVEDPRWDDAGLGDIPAMAAETFSVAAARLGLPGDLVS----EISLTLADDETVR 73 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +N E+R DKPTN+LSFP A + +LGD+++A+E + EA+ K F +H H Sbjct: 74 AVNAEWRNKDKPTNILSFPMADLAPGERPGPLLGDLLVAFETVAREADEEAKAFADHFRH 133 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 L++HGFLHL+G DH+ D +A ME E +IL + GI DPY + Sbjct: 134 LLVHGFLHLMGLDHMVDTEADDMEAAEIAILAEFGIADPYGDE 176 >gi|226943046|ref|YP_002798119.1| putative metalloprotease [Azotobacter vinelandii DJ] gi|259710170|sp|C1DMW4|RRMF_AZOVD RecName: Full=Probable rRNA maturation factor gi|226717973|gb|ACO77144.1| conserved hypothetical protein [Azotobacter vinelandii DJ] Length = 162 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 61/164 (37%), Positives = 82/164 (50%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQ+A L E R CE+ + + EL++ D Sbjct: 1 MLELDLQVASVRPL-PAEDDFRRWCELALRQ------------RSADSELTIRLVDEEEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R D PTNVLSFP +LGD+V+ ++E EA K + H Sbjct: 48 RELNRTWRHKDYPTNVLSFPA-EVPEGLLDIPLLGDLVICVPVVEREAAEQDKAADAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL+IHG LHLLGYDH++D +A ME LER +L +LG DPY+ D Sbjct: 107 HLVIHGCLHLLGYDHIEDAEAEEMESLERDLLAELGYPDPYDGD 150 >gi|254486624|ref|ZP_05099829.1| conserved hypothetical protein TIGR00043 [Roseobacter sp. GAI101] gi|214043493|gb|EEB84131.1| conserved hypothetical protein TIGR00043 [Roseobacter sp. GAI101] Length = 171 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 65/171 (38%), Positives = 90/171 (52%), Gaps = 18/171 (10%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L I E+ W + L TL E + +L + ++ E++++ D RI LN Sbjct: 4 LDIVEEDPRWA-ALDLETLAESALITTLKHLN-----LDPDVSEITILACDDARIADLNA 57 Query: 73 EYRGIDKPTNVLSFPTAFA------------SSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 ++RG PTNVLS+P ++D L LGDI ++Y+ EA GK Sbjct: 58 DFRGKPTPTNVLSWPADERGAAQDGGLPLTVTADFDGMLELGDIAISYDTCAKEARAAGK 117 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +H+ HLIIHG LHLLGYDH D DA +MEG+E IL LG++DPY D Sbjct: 118 SMTDHVTHLIIHGTLHLLGYDHDRDADATLMEGIEVEILGKLGLDDPYRED 168 >gi|292493859|ref|YP_003529298.1| hypothetical protein Nhal_3899 [Nitrosococcus halophilus Nc4] gi|291582454|gb|ADE16911.1| protein of unknown function UPF0054 [Nitrosococcus halophilus Nc4] Length = 153 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 8/159 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + V+ A+ I L+ + + N + E+++ D + L Sbjct: 1 MSIAVQVQYAVSRTGIPLQVDFQRWVEAVLVN--------QSKEGEVTIRIADEAEVAEL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N+ YR + TNVLSFP ++ +LGD+V+ ++ EA KE H HL+ Sbjct: 53 NWRYRYKEGATNVLSFPFELSAPLPFQISLLGDLVICAPVVAREALEHAKEERAHWAHLV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLG+DH + +A ME +E +IL+ LG +PYE Sbjct: 113 VHGVLHLLGFDHQQEAEAQQMEAMEITILKSLGYPNPYE 151 >gi|256821543|ref|YP_003145506.1| hypothetical protein Kkor_0317 [Kangiella koreensis DSM 16069] gi|256795082|gb|ACV25738.1| protein of unknown function UPF0054 [Kangiella koreensis DSM 16069] Length = 169 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 58/160 (36%), Positives = 87/160 (54%), Gaps = 3/160 (1%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A +++ DEI ++ F + + E+++ + + L Sbjct: 9 LDLQVACDSSTVPDEIDIKQWLATAFEVEAAKFGRAKTLAQ--PFEMTVRVVEQAESQAL 66 Query: 71 NFEYRGIDKPTNVLSFPTAFAS-SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 N +YRG D PTNVLSFP +G +LGD+ + E++E EA KE +H H+ Sbjct: 67 NNDYRGKDNPTNVLSFPFEMPEGIEGLELSILGDLAICAEVVEQEAAEQKKELRSHWTHM 126 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 ++HG LHLLGYDH+ D +A ME LE IL LG+ +PY+ Sbjct: 127 VVHGGLHLLGYDHIKDNEALEMESLEIEILAQLGVENPYQ 166 >gi|89069598|ref|ZP_01156937.1| hypothetical protein OG2516_13526 [Oceanicola granulosus HTCC2516] gi|89044796|gb|EAR50896.1| hypothetical protein OG2516_13526 [Oceanicola granulosus HTCC2516] Length = 163 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 88/167 (52%), Gaps = 15/167 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + VE A W + + L L E A + L + ++ E++L+ D RI L Sbjct: 1 MSVDVIVEEARW-EAVGLAALAEPAVAATLERL-----GLDPDLYEVTLLGCDDARIAAL 54 Query: 71 NFEYRGIDKPTNVLSFPTAF---------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 N ++RG PTNVLS+P+ + LGDI +AYE EA+ GK Sbjct: 55 NGDFRGKPAPTNVLSWPSEERGARIAGETPLPPEPTDPELGDIAIAYETCAREASEAGKP 114 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E H HLI+HG LHLLGYDH D DA +MEGLE IL LG+ DPY Sbjct: 115 LETHATHLIVHGTLHLLGYDHERDGDATLMEGLEVEILGKLGLPDPY 161 >gi|114561894|ref|YP_749407.1| putative metalloprotease [Shewanella frigidimarina NCIMB 400] gi|122300720|sp|Q087J6|RRMF_SHEFN RecName: Full=Probable rRNA maturation factor gi|114333187|gb|ABI70569.1| protein of unknown function UPF0054 [Shewanella frigidimarina NCIMB 400] Length = 156 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 63/169 (37%), Positives = 90/169 (53%), Gaps = 15/169 (8%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 MS + ++L LDLQIAV+N + T + + +VEL++ Sbjct: 1 MSQQGISL-DLDLQIAVDNPRLPTQAEFETWVRAAIGQT------------KPVVELTIR 47 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 D + LN YRG DKPTNVLSFP + +LGD+V+ ++E EA K Sbjct: 48 IVDIAESQQLNSTYRGKDKPTNVLSFPFE--APPEVELPLLGDLVICAPVVEQEAIEQNK 105 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 H H++IHG LHLLGYDH+ D++A ME LE ++E LG ++PY+ Sbjct: 106 PLIAHWAHMVIHGSLHLLGYDHIIDEEADEMESLETQLVEGLGFDNPYK 154 >gi|163739045|ref|ZP_02146458.1| hypothetical protein RGBS107_09406 [Phaeobacter gallaeciensis BS107] gi|161387850|gb|EDQ12206.1| hypothetical protein RGBS107_09406 [Phaeobacter gallaeciensis BS107] Length = 176 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 68/173 (39%), Positives = 90/173 (52%), Gaps = 18/173 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L I++E+ W D L T + + + + + ELSL+ D RI L Sbjct: 1 MTLDISIEDTRWQD-ADLTTHAVQAIHAVLGH-----FGLDADDCELSLLACDDARIMEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N E+R KPTNVLS+P +D + LGDI +AYE EA Sbjct: 55 NTEFRQKAKPTNVLSWPAEDLSSEEAGDEPLLPEADFTGEIPLGDIAIAYETCAREAEDA 114 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK +HL HLI+HG LHLLGYDH+ D DA +ME LE IL +GI+DPY +D Sbjct: 115 GKSLADHLRHLIVHGVLHLLGYDHIRDPDATLMERLEVQILGKMGIDDPYTLD 167 >gi|163741714|ref|ZP_02149104.1| hypothetical protein RG210_04075 [Phaeobacter gallaeciensis 2.10] gi|161384887|gb|EDQ09266.1| hypothetical protein RG210_04075 [Phaeobacter gallaeciensis 2.10] Length = 176 Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 68/173 (39%), Positives = 90/173 (52%), Gaps = 18/173 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L I++E+ W D L T + + + + + ELSL+ D RI L Sbjct: 1 MTLDISIEDTRWQD-ADLTTHAVQAIHAVLGH-----FGLDADDCELSLLACDDARIMEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N E+R KPTNVLS+P +D + LGDI +AYE EA Sbjct: 55 NTEFRQKAKPTNVLSWPVEDLSSEEAGDEPLLPEADFTGEIPLGDIAIAYETCAREAEDA 114 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK +HL HLI+HG LHLLGYDH+ D DA +ME LE IL +GI+DPY +D Sbjct: 115 GKSLADHLRHLIVHGVLHLLGYDHIRDPDATLMERLEVQILGKMGIDDPYTLD 167 >gi|119477444|ref|ZP_01617635.1| hypothetical protein GP2143_00682 [marine gamma proteobacterium HTCC2143] gi|119449370|gb|EAW30609.1| hypothetical protein GP2143_00682 [marine gamma proteobacterium HTCC2143] Length = 166 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 59/165 (35%), Positives = 80/165 (48%), Gaps = 14/165 (8%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + +DLQIA E+ + A + VEL++ D Sbjct: 1 MTTVAVDLQIASEDDDHPPPASFEQWVQAAVA------------SHQENVELTVRIVDEE 48 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 + LN YRGI+KPTNVLSFP D +LGD+++ ++ EA K H Sbjct: 49 ESQYLNDRYRGINKPTNVLSFPADL--PDHIDIPLLGDLIICAPVVAQEAKAQNKPCLCH 106 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 H+++HG LHLLGYDH+DD DA ME LE IL L I +PY + Sbjct: 107 WAHMVVHGTLHLLGYDHIDDHDAEEMEALEVKILASLEIANPYSI 151 >gi|308186035|ref|YP_003930166.1| metalloprotease [Pantoea vagans C9-1] gi|308056545|gb|ADO08717.1| Putative metalloprotease [Pantoea vagans C9-1] Length = 157 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 88/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A +N ++ + AV+ + E+++ D Sbjct: 1 MSEVILDLQVACDNTA---DLPDEGQFHRWLSAAVTPFQPES--------EVTVRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA GK E H Sbjct: 50 ESHELNLTYRGKDKPTNVLSFPFE--APPGIELPLLGDLIICRQVVEQEAAEQGKSVEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A MEGLE I+ LG DPY + Sbjct: 108 WAHMVVHGTLHLLGYDHIEDDEADEMEGLETEIMLALGYPDPYISE 153 >gi|163797132|ref|ZP_02191087.1| hypothetical protein BAL199_11501 [alpha proteobacterium BAL199] gi|159177648|gb|EDP62201.1| hypothetical protein BAL199_11501 [alpha proteobacterium BAL199] Length = 182 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 89/157 (56%), Gaps = 8/157 (5%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 DL + V++ W + E V KAV + ++ VELS+V D + LN Sbjct: 22 DLMVRVDHTDWRALLDDP---ETVVEKAVLAALDA---LEPEAVELSVVLADDAAVRALN 75 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 ++RG D PTNVLSFP AF G L GD++LA E ++ EA GK +HL HL++ Sbjct: 76 RDHRGKDAPTNVLSFPPAFVPPAGPRPL--GDVILALETVQREAVEQGKATVDHLRHLVV 133 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HG LHL GYDH + DA ME LER+IL LG+ DPY Sbjct: 134 HGVLHLSGYDHETESDAEEMEDLERTILAGLGVADPY 170 >gi|307942737|ref|ZP_07658082.1| putative metalloprotease [Roseibium sp. TrichSKD4] gi|307773533|gb|EFO32749.1| putative metalloprotease [Roseibium sp. TrichSKD4] Length = 171 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 68/159 (42%), Positives = 89/159 (55%), Gaps = 6/159 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L + +++E WG L+ LCE A+ ++ ELS+V TD I+ L Sbjct: 10 LTIDLSIEAGDWGPLEPLKKLCERAVAETLA-----SGLFVVPHSELSVVLTDDASIKVL 64 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R DKPTNVLSFP + + L LGDIV+A E + EA+ +G EF HL HL Sbjct: 65 NNNWRQKDKPTNVLSFPGSDPDDERYGPL-LGDIVVALETVTREADEMGIEFPAHLTHLF 123 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHL YDH D ++A VME ER I+ LG DPYE Sbjct: 124 VHGLLHLFDYDHQDLEEAEVMERKERQIMRCLGYEDPYE 162 >gi|85714183|ref|ZP_01045172.1| hypothetical protein NB311A_08503 [Nitrobacter sp. Nb-311A] gi|85699309|gb|EAQ37177.1| hypothetical protein NB311A_08503 [Nitrobacter sp. Nb-311A] Length = 190 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 83/158 (52%), Gaps = 8/158 (5%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 +I V W E + A + EL+++ TD I TLN Sbjct: 31 EILVVADCWRAEADAEAIIHHAIETAAGMVDE-----DTGDAELAIMLTDDAGIHTLNAN 85 Query: 74 YRGIDKPTNVLSFPTAFA---SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 +RGIDKPTNVLSFP S G MLGDI +AYE + EA+ K F +HL HL Sbjct: 86 WRGIDKPTNVLSFPALQPTGPSLPGDPPRMLGDIAIAYETLRREADNEHKPFSHHLSHLA 145 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHGFLHL+GYDH D DA ME LER IL LGI DPY Sbjct: 146 IHGFLHLIGYDHETDADAVEMENLERKILAQLGIPDPY 183 >gi|15599177|ref|NP_252671.1| metalloprotease [Pseudomonas aeruginosa PAO1] gi|107103500|ref|ZP_01367418.1| hypothetical protein PaerPA_01004570 [Pseudomonas aeruginosa PACS2] gi|116052021|ref|YP_789136.1| putative metalloprotease [Pseudomonas aeruginosa UCBPP-PA14] gi|254236875|ref|ZP_04930198.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254242668|ref|ZP_04935990.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296387490|ref|ZP_06876965.1| putative metalloprotease [Pseudomonas aeruginosa PAb1] gi|313109422|ref|ZP_07795382.1| hypothetical protein PA39016_001790022 [Pseudomonas aeruginosa 39016] gi|26006910|sp|Q9HX37|RRMF_PSEAE RecName: Full=Probable rRNA maturation factor gi|122261168|sp|Q02SF0|RRMF_PSEAB RecName: Full=Probable rRNA maturation factor gi|9950173|gb|AAG07369.1|AE004816_5 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115587242|gb|ABJ13257.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126168806|gb|EAZ54317.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126196046|gb|EAZ60109.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|310881884|gb|EFQ40478.1| hypothetical protein PA39016_001790022 [Pseudomonas aeruginosa 39016] Length = 160 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 60/163 (36%), Positives = 77/163 (47%), Gaps = 14/163 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+A E R CE+ + EL++ D Sbjct: 3 LELDLQVASAAPDLPSEAQFRAWCELALRQ-------------RPESELTIRLVDEAEGL 49 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVLSFP + +LGD+V+ ++ EA K + H H Sbjct: 50 ELNSTYRHKDYATNVLSFPAD-VPDELLDIPLLGDLVICAPVVAREALEQRKPLQAHWAH 108 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 L+IHG LHLLGYDH+DD +A ME LER +L +LG DPY D Sbjct: 109 LVIHGCLHLLGYDHIDDAEAEEMETLERELLAELGHPDPYACD 151 >gi|83854732|ref|ZP_00948262.1| hypothetical protein NAS141_08391 [Sulfitobacter sp. NAS-14.1] gi|83842575|gb|EAP81742.1| hypothetical protein NAS141_08391 [Sulfitobacter sp. NAS-14.1] Length = 174 Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats. Identities = 61/171 (35%), Positives = 88/171 (51%), Gaps = 18/171 (10%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L + E+ W + L TLC A+++L + + E++++ D I TLN Sbjct: 4 LDVIEEDPRWAG-LDLDTLCPRAMRAALAHL-----SLDADTAEVTVLACDDAHIATLNA 57 Query: 73 EYRGIDKPTNVLSFPTAFA------------SSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 ++R PTNVLS+P + + L LGDI ++Y+ EA G+ Sbjct: 58 DFRDKPTPTNVLSWPAEERGAVRDGELPLPVTPGFDNMLELGDIAISYDTCHAEAEAAGR 117 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +H+ HLI+HG LHLLGYDH D DA +ME LE IL LG++DPY D Sbjct: 118 PMADHVTHLIVHGLLHLLGYDHERDGDATLMERLEVEILGKLGLDDPYRDD 168 >gi|121997682|ref|YP_001002469.1| hypothetical protein Hhal_0891 [Halorhodospira halophila SL1] gi|145558843|sp|A1WVF5|RRMF_HALHL RecName: Full=Probable rRNA maturation factor gi|121589087|gb|ABM61667.1| protein of unknown function UPF0054 [Halorhodospira halophila SL1] Length = 154 Score = 137 bits (344), Expect = 7e-31, Method: Composition-based stats. Identities = 52/131 (39%), Positives = 70/131 (53%), Gaps = 1/131 (0%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS-SDGCSS 98 V + + EL++ D LN +YRG DKPTNVLSFP ++ Sbjct: 22 VQAWLEPVFEAHGRGGELTVRIVDEDESRALNRDYRGRDKPTNVLSFPCELPPGLPAEAA 81 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +LGD+V+ ++ EA GK +H H+++HG LHLLGYDH D A ME ER I Sbjct: 82 QILGDLVVCAPVVAREAAEQGKPEADHWAHMLVHGALHLLGYDHEDPAQAERMEAEERRI 141 Query: 159 LEDLGINDPYE 169 L LG+ DPY+ Sbjct: 142 LAALGVPDPYQ 152 >gi|209966241|ref|YP_002299156.1| hypothetical protein RC1_2976 [Rhodospirillum centenum SW] gi|209959707|gb|ACJ00344.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 226 Score = 137 bits (344), Expect = 7e-31, Method: Composition-based stats. Identities = 70/189 (37%), Positives = 94/189 (49%), Gaps = 35/189 (18%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++ +AVE+ W E L E + A +++G V + ELS+V D + TLN Sbjct: 16 EIFVAVESGGW--ETDLPD-AETLVLTAAEAALARGEGVPDGPAELSVVLADDATVRTLN 72 Query: 72 FEYRGIDKPTNVLSF---------------------------PTAFASSD-----GCSSL 99 +YRG D+PTNVLSF P + D + Sbjct: 73 RDYRGKDRPTNVLSFALYADGDDADTPPEGLEVEQDGPEGDIPGDDDAEDSLAQGDAPPV 132 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGD++LAYE + EA K +HL HL++HG LHLLGYDH+ D DA ME LE IL Sbjct: 133 LLGDVILAYETVVREAGEQNKPLADHLTHLVVHGVLHLLGYDHITDPDAERMERLETEIL 192 Query: 160 EDLGINDPY 168 LGI+DPY Sbjct: 193 AGLGISDPY 201 >gi|254511649|ref|ZP_05123716.1| conserved hypothetical protein TIGR00043 [Rhodobacteraceae bacterium KLH11] gi|221535360|gb|EEE38348.1| conserved hypothetical protein TIGR00043 [Rhodobacteraceae bacterium KLH11] Length = 164 Score = 137 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 61/172 (35%), Positives = 88/172 (51%), Gaps = 20/172 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++L++ +E+ W L L A+ + ++ ++ E+SL+ + RI L Sbjct: 1 MNLEVTLEDDRWQA---LEPLARHAIAEVLGYC-----GLEADLCEISLLGCNDARIAIL 52 Query: 71 NFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N E+R PTNVLS+P D + LGDI ++Y+ EA Sbjct: 53 NAEFRETPTPTNVLSWPAEDLAADLPGDKPRQPKPDFTGEIALGDIAISYDTCAREAAEA 112 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 GK H+ HLI+HG LHLLGYDH+ D DA +ME +E IL LGI+DPY V Sbjct: 113 GKPMGAHVTHLIVHGALHLLGYDHIRDPDATLMEAVEVEILGKLGIDDPYNV 164 >gi|91792174|ref|YP_561825.1| putative metalloprotease [Shewanella denitrificans OS217] gi|123061206|sp|Q12R24|RRMF_SHEDO RecName: Full=Probable rRNA maturation factor gi|91714176|gb|ABE54102.1| protein of unknown function UPF0054 [Shewanella denitrificans OS217] Length = 153 Score = 137 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 86/159 (54%), Gaps = 14/159 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIAV++ + T + + EL++ + ++L Sbjct: 7 LDLQIAVDSNQLPSQADFETWVRTALGNTL------------DTAELTIRLVEIAESQSL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YRG DKPTNVLSFP + G +LGD+V+ ++E EA K + H H++ Sbjct: 55 NHDYRGKDKPTNVLSFPFE--APPGMELPLLGDLVICVAVVEQEALEQNKPLQAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 IHG LHLLGYDH+ D++A ME LE ++E LG ++PY+ Sbjct: 113 IHGCLHLLGYDHIIDQEAEEMESLETQLIEGLGFSNPYK 151 >gi|295687477|ref|YP_003591170.1| hypothetical protein Cseg_0020 [Caulobacter segnis ATCC 21756] gi|295429380|gb|ADG08552.1| protein of unknown function UPF0054 [Caulobacter segnis ATCC 21756] Length = 157 Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 10/161 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I +E+ W E + +A ++ ++ + ++ T+ ++ L Sbjct: 3 ITVDIEIEDEAWTKAA---EDAEALVWRAAQAVLDAHEDIEGQG--IVILLTNDDTVQGL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N ++R D TNVLSFP+ +GDI LAY + EA GK +HL HL+ Sbjct: 58 NRDFRQKDYATNVLSFPSPPNPEG-----QIGDIALAYGVCAREAEEQGKPLAHHLQHLV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HG LHLLGYDH D +A ME LER IL L + DPY D Sbjct: 113 AHGVLHLLGYDHESDDEAEAMEALEREILAGLDVPDPYASD 153 >gi|320539650|ref|ZP_08039314.1| putative conserved protein [Serratia symbiotica str. Tucson] gi|320030262|gb|EFW12277.1| putative conserved protein [Serratia symbiotica str. Tucson] Length = 157 Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 91/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQIA E++ +L E F + + ++ + + E+++ D Sbjct: 1 MSQVILDLQIACEDSN-----NLPD--ETAFQRWLEAVLLQF----QEEAEVTVRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + G + +LGD+++ +++E EA GK E H Sbjct: 50 ESNELNLTYRGKDKPTNVLSFPFE--APPGIALPLLGDLIICRQVVEQEAAEQGKTSEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D A ME LE I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDAAEEMESLETEIMHGLGYPDPYLAE 153 >gi|49080770|gb|AAT50056.1| PA3982 [synthetic construct] Length = 161 Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats. Identities = 59/163 (36%), Positives = 77/163 (47%), Gaps = 14/163 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+A E R CE+ + EL++ D Sbjct: 3 LELDLQVASAAPDLPSEAQFRAWCELALRQ-------------RPESELTIRLVDEAEGL 49 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TN+LSFP + +LGD+V+ ++ EA K + H H Sbjct: 50 ELNSTYRHKDYATNLLSFPAD-VPDELLDIPLLGDLVICAPVVAREALEQRKPLQAHWAH 108 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 L+IHG LHLLGYDH+DD +A ME LER +L +LG DPY D Sbjct: 109 LVIHGCLHLLGYDHIDDAEAEEMETLERELLAELGHPDPYACD 151 >gi|16124310|ref|NP_418874.1| hypothetical protein CC_0054 [Caulobacter crescentus CB15] gi|221232991|ref|YP_002515427.1| metal-dependent hydrolase [Caulobacter crescentus NA1000] gi|26006909|sp|Q9AC14|RRMF_CAUCR RecName: Full=Probable rRNA maturation factor gi|254799469|sp|B8GX09|RRMF_CAUCN RecName: Full=Probable rRNA maturation factor gi|13421148|gb|AAK22042.1| conserved hypothetical protein [Caulobacter crescentus CB15] gi|220962163|gb|ACL93519.1| predicted metal-dependent hydrolase [Caulobacter crescentus NA1000] Length = 157 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 10/161 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I +E+ W E + +A ++ ++ + ++ TD ++ L Sbjct: 3 ITVDIEIEDEAWTTA---EADAEALVWRAAQAVLDAHEDIEGQG--IVILLTDDDSVQAL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N ++R D TNVLSFP+ +GDI LAY + EA GK +HL HL+ Sbjct: 58 NRDFRKKDYATNVLSFPSPPNPEG-----QIGDIALAYGVCAREAAEQGKPLAHHLQHLV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HG LHLLGYDH D +A ME LER IL L + DPY D Sbjct: 113 AHGVLHLLGYDHERDDEAEAMEALEREILAGLDVPDPYASD 153 >gi|83941255|ref|ZP_00953717.1| hypothetical protein EE36_03463 [Sulfitobacter sp. EE-36] gi|83847075|gb|EAP84950.1| hypothetical protein EE36_03463 [Sulfitobacter sp. EE-36] Length = 174 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 60/171 (35%), Positives = 87/171 (50%), Gaps = 18/171 (10%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L + E+ W + L TLC +++L + + E++++ D I TLN Sbjct: 4 LDVIEEDPRWAG-LDLDTLCPRAMRATLAHL-----SLDADTAEVTVLACDDAHIATLNA 57 Query: 73 EYRGIDKPTNVLSFPTAFA------------SSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 ++R PTNVLS+P + + L LGDI ++Y+ EA G+ Sbjct: 58 DFRDKPTPTNVLSWPAEERGAARDGELPLPVTPGFDNMLELGDIAISYDTCHAEAEAAGR 117 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +H+ HLI+HG LHLLGYDH D DA +ME LE IL LG++DPY D Sbjct: 118 PMADHVTHLIVHGLLHLLGYDHERDGDATLMERLEVEILGKLGLDDPYRDD 168 >gi|94501474|ref|ZP_01307993.1| hypothetical protein RED65_05912 [Oceanobacter sp. RED65] gi|94426439|gb|EAT11428.1| hypothetical protein RED65_05912 [Oceanobacter sp. RED65] Length = 154 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 62/165 (37%), Positives = 92/165 (55%), Gaps = 14/165 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + +D+QIA+E GD + T + A+++L ELS+ D+ Sbjct: 1 MIDVDVQIAIE----GDNLPTPTQLQSWVTAALASLRP--------EAELSIRLVDNSES 48 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 ++LN EYRG DKPTNVLSFP + + ++GD+V+ + ++ EA K E+H Sbjct: 49 QSLNHEYRGKDKPTNVLSFPFEIPPELAEIENFTLIGDLVICHPVVCQEAAEQKKPLEHH 108 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 H++IHG LHLLGYDH+++ +A ME LE IL L I DPY + Sbjct: 109 YAHMVIHGCLHLLGYDHINEDEAEEMERLETDILATLNIPDPYII 153 >gi|110834797|ref|YP_693656.1| hypothetical protein ABO_1936 [Alcanivorax borkumensis SK2] gi|123345401|sp|Q0VN64|RRMF_ALCBS RecName: Full=Probable rRNA maturation factor gi|110647908|emb|CAL17384.1| conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 175 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 61/168 (36%), Positives = 82/168 (48%), Gaps = 13/168 (7%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 + + P +D+Q A + DE HL A + +++L Sbjct: 1 MNGIPTPTVDIQWASDAPDAPDETHLCEWVRHAAIAAGGVV-----------GDITLRIV 49 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGK 120 D I TLN +YR D PTNVLSFP +G ++GDI++ ++ EAN K Sbjct: 50 DEEEIRTLNRDYRDKDAPTNVLSFPFEMPEGLPEGAMDPLVGDIIICAAVVRREANEQHK 109 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H H++ HG LHLLGYDH+DD DA VME LE L +LG DPY Sbjct: 110 PLVAHWAHMVTHGVLHLLGYDHIDDDDAIVMETLEIRALGELGFPDPY 157 >gi|114319557|ref|YP_741240.1| hypothetical protein Mlg_0396 [Alkalilimnicola ehrlichii MLHE-1] gi|122312505|sp|Q0ABN7|RRMF_ALHEH RecName: Full=Probable rRNA maturation factor gi|114225951|gb|ABI55750.1| protein of unknown function UPF0054 [Alkalilimnicola ehrlichii MLHE-1] Length = 166 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 65/171 (38%), Positives = 86/171 (50%), Gaps = 7/171 (4%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M+ + P LDL++ W + E F + VS ++ G L++ Sbjct: 1 MTAAVNDAPALDLEVQYV-VAWRAGLP----PEAAFRRWVSAALAAGG--HTGPAALAVR 53 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 D LN +YRG D PTNVLSFP LGD+V+ ++E EA GK Sbjct: 54 VVDKAEGRRLNHDYRGRDYPTNVLSFPFEAPPGLDEPLPELGDLVICAPVVEREAREQGK 113 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +H HL++HG LHLLGYDH ++A MEGLER IL LGI DPY +D Sbjct: 114 PEADHWAHLVVHGVLHLLGYDHEAAEEAEAMEGLERRILAGLGIADPYRLD 164 >gi|319405108|emb|CBI78712.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 158 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 68/159 (42%), Positives = 93/159 (58%), Gaps = 5/159 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + I +E+A W DE L + + + +L + E ELSL+FTD R+ Sbjct: 1 MIAIDITIESAKWNDEEMLYNITDKALVTTLQHL-----SLNEITSELSLLFTDDTRMAQ 55 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N ++R +KPTNVLSFP + LMLGDIV+A E + EA K F++HL H+ Sbjct: 56 INAQWRHHNKPTNVLSFPAFPLKAGQNPRLMLGDIVIAQETVMREAEEERKSFQDHLTHI 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IIHG LHLLGYDH + +A ME LE+ IL+ L I DPY Sbjct: 116 IIHGILHLLGYDHETNNEANQMEKLEKEILQKLSIKDPY 154 >gi|163752488|ref|ZP_02159677.1| hypothetical protein KT99_21054 [Shewanella benthica KT99] gi|161327632|gb|EDP98827.1| hypothetical protein KT99_21054 [Shewanella benthica KT99] Length = 158 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 15/170 (8%) Query: 1 MSVKKVNL-PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSL 59 MS+ NL LDLQ+A +N + + + N EL++ Sbjct: 1 MSLNHNNLELDLDLQVATDNERLPSQEDFELWVRIALRDTM------------NQAELTI 48 Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 D +TLN YRG DKPTNVLSFP + +LGD+++ ++E EA Sbjct: 49 RIVDEAESQTLNSSYRGKDKPTNVLSFPFE--APPEIDIPLLGDLIICAPVVEFEAKQQN 106 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 K ++H H+++HG LHLLGYDH+ D +A ME LE ++E LG N+PY+ Sbjct: 107 KSLQSHWAHMVVHGCLHLLGYDHIQDAEAEEMESLETQLIESLGFNNPYK 156 >gi|188534466|ref|YP_001908263.1| Conserved hypothetical protein (UPF0054) [Erwinia tasmaniensis Et1/99] gi|238689711|sp|B2VBL6|RRMF_ERWT9 RecName: Full=Probable rRNA maturation factor gi|188029508|emb|CAO97385.1| Conserved hypothetical protein (UPF0054) [Erwinia tasmaniensis Et1/99] Length = 155 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 89/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A EN E L E F + + ++ + + E+++ D Sbjct: 1 MSGVILDLQLACEN-----EQGLP--AETDFQRWLEAVLPQF----QPESEVTIRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YR DKPTNVLSFP + G +LGD+++ +++E EA GK E H Sbjct: 50 ESRELNHTYRSKDKPTNVLSFPFE--APPGIELPLLGDLIICRQVVEQEAVEQGKTREAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVIHGSLHLLGYDHIEDDEAEEMESLETEIMLALGYPDPYISE 153 >gi|70732739|ref|YP_262502.1| putative metalloprotease [Pseudomonas fluorescens Pf-5] gi|123652712|sp|Q4K5I1|RRMF_PSEF5 RecName: Full=Probable rRNA maturation factor gi|68347038|gb|AAY94644.1| conserved hypothetical protein TIGR00043 [Pseudomonas fluorescens Pf-5] Length = 152 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 84/164 (51%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQ A + DE R CE+ + + EL++ D Sbjct: 1 MLELDLQRASQQPAPSDE-QFRQWCELALRQRTA------------DSELTIRLVDEAEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R D TNVLSFP + +LGD+V+ ++E EA GKE + H Sbjct: 48 RELNHTWRHKDYATNVLSFPAD-VPDELLDIPLLGDLVICIAVVEREAAEQGKELQAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL+IHG LHLLGYDH+DD +A ME LER++L +LG DPY D Sbjct: 107 HLVIHGCLHLLGYDHIDDDEAEEMEALERTLLAELGHPDPYADD 150 >gi|120555651|ref|YP_960002.1| hypothetical protein Maqu_2740 [Marinobacter aquaeolei VT8] gi|145572774|sp|A1U496|RRMF_MARAV RecName: Full=Probable rRNA maturation factor gi|120325500|gb|ABM19815.1| protein of unknown function UPF0054 [Marinobacter aquaeolei VT8] Length = 157 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 15/166 (9%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ +DLQ+A + + E + EN E+++ D+ Sbjct: 1 MSKVTVDLQMAFDGTGVPSKTLFEAWAEAAWQ-------------GENPTEVTIRIVDND 47 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN +YRG DKPTNVLSFP + G + + GD+V+ ++E EA K+ H Sbjct: 48 ESRELNHQYRGKDKPTNVLSFPFE--APAGITVPLAGDLVICAPVVEQEAREQNKDAVAH 105 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHL GYDH++ +A VME LE +L LG +PYE + Sbjct: 106 WAHMVVHGMLHLQGYDHIEVNEAEVMEALEIRLLAQLGFANPYEAE 151 >gi|303250397|ref|ZP_07336595.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252249|ref|ZP_07534146.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650723|gb|EFL80881.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860171|gb|EFM92187.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 163 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 88/166 (53%), Gaps = 8/166 (4%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P +DLQIA EN + + +A+++ F E+++ D Sbjct: 1 MTTPIIDLQIAAEN---SENLPSLAQFTQWVQRALAHEAQTEDF---PETEITIRIVDEA 54 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP +G +LGD+++ +++E EA E+H Sbjct: 55 ESHELNLTYRGKDKPTNVLSFPFEV--PEGIELPLLGDLIICRQVVEKEAQEQQISLESH 112 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL IHG LHLLGYDH++D +A MEGLE I++ LG DPY + Sbjct: 113 WAHLAIHGTLHLLGYDHIEDAEAEEMEGLETEIMQSLGFEDPYISE 158 >gi|311280445|ref|YP_003942676.1| hypothetical protein Entcl_3146 [Enterobacter cloacae SCF1] gi|308749640|gb|ADO49392.1| protein of unknown function UPF0054 [Enterobacter cloacae SCF1] Length = 155 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A EN E L E F + + +I + + E+++ D Sbjct: 1 MSAVILDLQLACEN-----EAGLPQ--EAQFQRWLDAVIPQF----QEESEVTVRLVDDA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DK TNVLSFP + G +LGD+++ +++E EA GK E H Sbjct: 50 ESHELNLTYRGKDKSTNVLSFPFE--APPGMEMPLLGDLIICRQVVEREAEEQGKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG +DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMLALGYDDPYIAE 153 >gi|90421994|ref|YP_530364.1| hypothetical protein RPC_0470 [Rhodopseudomonas palustris BisB18] gi|122477512|sp|Q21C41|RRMF_RHOPB RecName: Full=Probable rRNA maturation factor gi|90104008|gb|ABD86045.1| protein of unknown function UPF0054 [Rhodopseudomonas palustris BisB18] Length = 168 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 84/159 (52%), Gaps = 7/159 (4%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 ++ + W E + + EL+++ TD ++TLN Sbjct: 10 EVLIVADCWQAEAEAEAIVLRAI-----EAAAAMTDADTADAELAVMLTDDAGVQTLNAN 64 Query: 74 YRGIDKPTNVLSFPT--AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +RGIDKPTNVLSFP + + MLGDI +AY+ EA+ GK F++HL HL + Sbjct: 65 WRGIDKPTNVLSFPALQPEGDAPDDAPKMLGDIAIAYQTTRREADDEGKPFDHHLSHLAV 124 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HGFLHL+GYDH D +A ME LER IL LG+ DPY Sbjct: 125 HGFLHLVGYDHEKDAEAEAMESLEREILAQLGVPDPYAD 163 >gi|312963221|ref|ZP_07777705.1| metalloprotease [Pseudomonas fluorescens WH6] gi|311282487|gb|EFQ61084.1| metalloprotease [Pseudomonas fluorescens WH6] Length = 152 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 59/163 (36%), Positives = 81/163 (49%), Gaps = 14/163 (8%) Query: 10 RLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 L+L + +E+ E R C + + + EL++ D Sbjct: 1 MLELDLQLESTKPAPSEARFREWCALALRQRTA------------DSELTIRLVDEPEGR 48 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN +R D TNVLSFP + +LGD+V+ ++E EA GK E H H Sbjct: 49 ELNRTWRQKDYATNVLSFPAD-VPDELLDIPLLGDLVICVAVVEREAKEQGKALEAHWAH 107 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 L+IHG LHLLGYDH+DD +A ME LER++L +LG DPY D Sbjct: 108 LVIHGCLHLLGYDHIDDDEAEEMEALERTLLAELGHPDPYADD 150 >gi|146279876|ref|YP_001170034.1| hypothetical protein Rsph17025_3874 [Rhodobacter sphaeroides ATCC 17025] gi|145558117|gb|ABP72729.1| hypothetical protein Rsph17025_3874 [Rhodobacter sphaeroides ATCC 17025] Length = 167 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 61/169 (36%), Positives = 82/169 (48%), Gaps = 19/169 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + +E+ W +E+ L L + L + L ++ D RI LN Sbjct: 5 VDTVIEDGRW-EELDLPALATRAAEATFAGLDLRPEGFI-----LVVMGCDDARIAELNG 58 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCS-------------SLMLGDIVLAYEIIEIEANVLG 119 +R KPTNVLS+P+ +SD LGDI +AYE EA G Sbjct: 59 TFRQKGKPTNVLSWPSEERASDEAGVAPEPPEPGEPEDPEHLGDIAIAYETCAREAAEQG 118 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K +H+ HL++HG LHLLGYDHVD+ DA +ME E IL LG+ DPY Sbjct: 119 KPVPDHVTHLLVHGILHLLGYDHVDEADADLMEATETRILAGLGVPDPY 167 >gi|145572763|sp|Q1GK93|RRMF_SILST RecName: Full=Probable rRNA maturation factor Length = 170 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 91/173 (52%), Gaps = 18/173 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L + +E+A W D L + + ++ L +++ E++++ D RI L Sbjct: 1 MILDVVIEDARW-DAAALEKQAQEAVSATLAYL-----ELEDEDWEVTVLGCDDARIADL 54 Query: 71 NFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N E+R KPTNVLS+P D LGDI ++Y+ EAN+ Sbjct: 55 NAEFREKPKPTNVLSWPAQELAAAQDGGQPTPPEVDFMGDAALGDIAISYDTCVKEANLA 114 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K E+H+ HL++HG LHLLGYDH+ D DA +ME LE IL LGI DPY ++ Sbjct: 115 HKSREDHVRHLLVHGTLHLLGYDHIRDGDATIMETLEVGILGKLGIPDPYIIE 167 >gi|157376605|ref|YP_001475205.1| putative metalloprotease [Shewanella sediminis HAW-EB3] gi|189040151|sp|A8FZ04|RRMF_SHESH RecName: Full=Probable rRNA maturation factor gi|157318979|gb|ABV38077.1| protein of unknown function UPF0054 [Shewanella sediminis HAW-EB3] Length = 158 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 57/159 (35%), Positives = 86/159 (54%), Gaps = 14/159 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A+EN+ + + K ++ EL++ D + L Sbjct: 12 LDLQLAIENSQLPSKQNFELWVRTALPKTMAE------------AELTIRIVDEAESQEL 59 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP + +LGD+++ ++E+EA K + H H++ Sbjct: 60 NSTYRGKDKPTNVLSFPFE--APPEIEIPLLGDLIICAPVVELEALQQNKPLQAHWAHMV 117 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D +A ME LE ++E LG N+PY+ Sbjct: 118 VHGCLHLLGYDHINDAEAEEMESLETQLVESLGFNNPYK 156 >gi|254521495|ref|ZP_05133550.1| conserved hypothetical protein TIGR00043 [Stenotrophomonas sp. SKA14] gi|219719086|gb|EED37611.1| conserved hypothetical protein TIGR00043 [Stenotrophomonas sp. SKA14] Length = 156 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 61/163 (37%), Positives = 82/163 (50%), Gaps = 10/163 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L +AV AL + A A+ I +L++ D+ ++L Sbjct: 1 MRLDVAVNYALPRTGLPAAVSFRKWVAAALKGRIR--------EADLAIRVVDAKEGQSL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N YRG D TNVLSFP G +LGD+V+ ++ EA+ GK H H Sbjct: 53 NRHYRGKDYATNVLSFPAELPEGLPKGVKFPLLGDLVICAPVVAREADEQGKALNAHYAH 112 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 L +HG LHLLG+DH DDK+A ME LER IL +LGI DPY + Sbjct: 113 LTVHGVLHLLGWDHEDDKEAEAMEQLEREILAELGIADPYAGE 155 >gi|226331002|ref|ZP_03806520.1| hypothetical protein PROPEN_04932 [Proteus penneri ATCC 35198] gi|225201797|gb|EEG84151.1| hypothetical protein PROPEN_04932 [Proteus penneri ATCC 35198] Length = 155 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 64/166 (38%), Positives = 91/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A EN L T E F + ++ + V E+++ D Sbjct: 1 MSEVILDLQVASENTQ-----GLPT--EAQFMTWLEAVLPQFQPVS----EVTIRIVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + +LGD+++ +++E EA K E H Sbjct: 50 ESHELNLTYRGKDKPTNVLSFPFE--APPEVELPLLGDLIICRQVVEKEATEQSKTVEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH++D +A MEGLE IL++LG DPY ++ Sbjct: 108 WAHMVIHGCLHLLGYDHIEDDEAEEMEGLETEILQNLGYADPYLIE 153 >gi|253990621|ref|YP_003041977.1| metalloprotease [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782071|emb|CAQ85235.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 155 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQIA EN+ E E +F + + ++ + + E+++ D Sbjct: 1 MSSVILDLQIACENSQNLPE-------ETLFQRWLDGVLPQF----QPESEVTIRIVDET 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + +LGD+++ +++E EA K E H Sbjct: 50 ESHDLNLTYRGKDKPTNVLSFPFE--APPEVDLPLLGDLIICRQVVEKEAEEQQKTVEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH+ D +A ME LE I++ LG +DPY + Sbjct: 108 WAHMVVHGCLHLLGYDHIADDEAEEMESLETEIMQKLGYSDPYLAE 153 >gi|229592785|ref|YP_002874904.1| putative metalloprotease [Pseudomonas fluorescens SBW25] gi|259647080|sp|C3K2K8|RRMF_PSEFS RecName: Full=Probable rRNA maturation factor gi|229364651|emb|CAY52573.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 164 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 84/164 (51%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQ+A E E R C + + + EL++ D Sbjct: 1 MLELDLQLATEAPA-PSEAQFREWCALALRQRTA------------DSELTIRLVDEPEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R D TNVLSFP + +LGD+V+ E++E EA GKE E H Sbjct: 48 RELNHTWRQKDYATNVLSFPAD-VPDELLDIPLLGDLVICVEVVEREAKEQGKELEAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL+IHG LHLLGYDH+DD +A ME LE+++L +LG DPY D Sbjct: 107 HLVIHGCLHLLGYDHIDDDEAEEMETLEQTLLAELGHPDPYADD 150 >gi|197106913|ref|YP_002132290.1| hypothetical protein PHZ_c3452 [Phenylobacterium zucineum HLK1] gi|196480333|gb|ACG79861.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 154 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 59/161 (36%), Positives = 79/161 (49%), Gaps = 13/161 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D+++ E+ W + AKA G ++L+ D + Sbjct: 1 MIDIEV--EDPAWTAALPDAEALVRAAAKAALASEGAGGEG------VTLLLADDAAVRE 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +RG D TNVLSFP LGD+ LA + EA GK +HL HL Sbjct: 53 LNARFRGKDSATNVLSFPA-----PPNPERHLGDVALACGVCAREAAEQGKPLAHHLQHL 107 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 ++HG LHLLGYDH+ + +A MEGLER IL LG+ DPY V Sbjct: 108 VVHGVLHLLGYDHMREDEAEAMEGLERDILAGLGVPDPYAV 148 >gi|84515223|ref|ZP_01002585.1| hypothetical protein SKA53_01156 [Loktanella vestfoldensis SKA53] gi|84510506|gb|EAQ06961.1| hypothetical protein SKA53_01156 [Loktanella vestfoldensis SKA53] Length = 164 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 16/170 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + VE+ W + + L + L ++ ++ E++++ D RI L Sbjct: 1 MSVDVVVEDLRWA-AVDIDALAQQASDAVFDRL-----GLEPSVFEIAVLACDDARIAAL 54 Query: 71 NFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 N ++RG PTNVLS+P+ D LGDI +AY+ EA G Sbjct: 55 NADFRGKPAPTNVLSWPSDERAPAVAGEMPLPPDPVMDTELGDIAIAYDTCLREAEAAGS 114 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +F +H +HL++HG LHLLG+DH D DA +MEGLE IL +G+++PY Sbjct: 115 QFIHHCLHLLVHGTLHLLGFDHERDLDATLMEGLEVEILGKMGVDNPYRD 164 >gi|114706888|ref|ZP_01439788.1| hypothetical protein FP2506_18769 [Fulvimarina pelagi HTCC2506] gi|114537836|gb|EAU40960.1| hypothetical protein FP2506_18769 [Fulvimarina pelagi HTCC2506] Length = 188 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 86/159 (54%), Gaps = 3/159 (1%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 L ++VE+ W + E + + + F K ELS+ +D + +N Sbjct: 20 SLALSVEDDRWEAALGNP---EAFVTATLDAVARRFEFSKPFASELSVTLSDDETVREIN 76 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 ++R DKPTNVLSFP +LGD++LAYE EA K F NH HL++ Sbjct: 77 GQWREKDKPTNVLSFPMVDLEPGERPGPLLGDLILAYETCAREAAGEAKPFVNHARHLLV 136 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HGFLH LGYDH++D +A ME LE SIL LGI DPY+V Sbjct: 137 HGFLHCLGYDHIEDDEAEEMEALETSILAGLGIPDPYDV 175 >gi|294142166|ref|YP_003558144.1| hypothetical protein SVI_3395 [Shewanella violacea DSS12] gi|293328635|dbj|BAJ03366.1| conserved hypothetical protein [Shewanella violacea DSS12] Length = 158 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 86/170 (50%), Gaps = 15/170 (8%) Query: 1 MSVKKVNL-PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSL 59 MS+ NL LDLQIA++N ++ EL++ Sbjct: 1 MSLNHKNLELELDLQIAIDNKSLPSREDFELWVHSALRDTMTQ------------AELTI 48 Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 D +TLN YRG DKPTNVLSFP + +LGD+V+ ++E EA Sbjct: 49 RIVDKAESQTLNSSYRGKDKPTNVLSFPFE--APPEIDIPLLGDLVICAPVVEFEAKQQN 106 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 K + H H+++HG LHLLGYDH+ D +A ME LE ++E LG N+PY+ Sbjct: 107 KSLKAHWAHMVVHGCLHLLGYDHIQDAEAEEMESLETQLIEKLGFNNPYK 156 >gi|197284345|ref|YP_002150217.1| metalloprotease [Proteus mirabilis HI4320] gi|227358511|ref|ZP_03842836.1| metal-dependent hydrolase [Proteus mirabilis ATCC 29906] gi|238693170|sp|B4EV26|RRMF_PROMH RecName: Full=Probable rRNA maturation factor gi|194681832|emb|CAR41113.1| conserved hypothetical protein [Proteus mirabilis HI4320] gi|227161222|gb|EEI46296.1| metal-dependent hydrolase [Proteus mirabilis ATCC 29906] Length = 155 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 88/167 (52%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A EN E T E V + I E+++ D Sbjct: 1 MSEVILDLQVATENTQGLPSEAQFITWLEAVL------------PQFQPISEVTIRIVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG D+PTNVLSFP + +LGD+++ +++E EA+ K E Sbjct: 49 AESHELNLTYRGKDRPTNVLSFPFE--APPEVELPLLGDLIICRQVVEKEADEQNKTVEE 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H++IHG LHLLGYDH++D +A MEGLE IL+ LG DPY ++ Sbjct: 107 HWAHMVIHGCLHLLGYDHIEDDEAEEMEGLETEILQKLGYEDPYLIE 153 >gi|114798379|ref|YP_758839.1| hypothetical protein HNE_0105 [Hyphomonas neptunium ATCC 15444] gi|123129252|sp|Q0C604|RRMF_HYPNA RecName: Full=Probable rRNA maturation factor gi|114738553|gb|ABI76678.1| conserved hypothetical protein TIGR00043 [Hyphomonas neptunium ATCC 15444] Length = 150 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 59/162 (36%), Positives = 82/162 (50%), Gaps = 12/162 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + VE+ W L LC F A Y ++L+ D+H + Sbjct: 1 MISFDLIVEDDSWAALGDLEALCRKAFDAA-------EYVAPVEEGNIALLLADNHVLHQ 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN ++R DKPT+VLSFP+ LGDI +A+ + +A + GK + HLVHL Sbjct: 54 LNLDFRSKDKPTDVLSFPS-----LPMDRPFLGDIAVAWGVSASDAKIQGKPLDAHLVHL 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG+LHLLG+DH D +A ME LE L L I +PY D Sbjct: 109 LIHGYLHLLGFDHETDDEAAEMEALEIKALASLDIANPYRND 150 >gi|192359229|ref|YP_001982117.1| hypothetical protein CJA_1637 [Cellvibrio japonicus Ueda107] gi|254800588|sp|B3PER3|RRMF_CELJU RecName: Full=Probable rRNA maturation factor gi|190685394|gb|ACE83072.1| hypothetical protein CJA_1637 [Cellvibrio japonicus Ueda107] Length = 177 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 13/164 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ ++D++I + E H+R + + E+S+ D+ Sbjct: 1 MSKYQIDIEINSASQQLPSEEHIRQWISTALD-----------SQQLDEAEVSVYIVDTD 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN EYR D TNVLSFP +LGD+V+ ++E EA+ K + H Sbjct: 50 EGRDLNREYRERDYATNVLSFPADI--PPEVEIPLLGDLVVCAPVVEHEADEQHKPLDAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 H++IHG LHLLGYDH+D+ +A ME LE +L LG DPY+ Sbjct: 108 WAHMLIHGSLHLLGYDHIDNDEAETMEALETQLLARLGYADPYD 151 >gi|157369460|ref|YP_001477449.1| hypothetical protein Spro_1217 [Serratia proteamaculans 568] gi|166977828|sp|A8GB31|RRMF_SERP5 RecName: Full=Probable rRNA maturation factor gi|157321224|gb|ABV40321.1| protein of unknown function UPF0054 [Serratia proteamaculans 568] Length = 157 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 90/167 (53%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A +N+ D E F + + ++ + + E+++ D Sbjct: 1 MSQVILDLQLACADNSGLPD--------EATFQRWLEGVLPQF----QEEAEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG+DKPTNVLSFP + G +LGD+++ +++E EA K E Sbjct: 49 AESNELNLTYRGMDKPTNVLSFPFE--APPGIELPLLGDLIICRQVVEREAAEQDKALEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMHGLGYPDPYLAE 153 >gi|148555304|ref|YP_001262886.1| hypothetical protein Swit_2389 [Sphingomonas wittichii RW1] gi|166228577|sp|A5V8Y2|RRMF_SPHWW RecName: Full=Probable rRNA maturation factor gi|148500494|gb|ABQ68748.1| protein of unknown function UPF0054 [Sphingomonas wittichii RW1] Length = 169 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 61/165 (36%), Positives = 82/165 (49%), Gaps = 7/165 (4%) Query: 13 LQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +++AV+ W D L A+ + E+S+ TD + LN Sbjct: 2 IEVAVQAEPDWADGTDWERLAIEAVTAAMRTTPHAAMLDAAYMAEVSIRLTDDDEVHALN 61 Query: 72 FEYRGIDKPTNVLSFPT------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +YR DKPTNVLSFP + ++LGDI+LA + EA G H Sbjct: 62 RQYRQKDKPTNVLSFPMVQDDLIEGLDNSDDGEVLLGDIILARGVCVREAAEKGVPTAEH 121 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HLI+HG LHLLGYDH++D +A ME LER L LGI+DPY + Sbjct: 122 ATHLIVHGTLHLLGYDHIEDDEAEAMEDLERVALATLGIDDPYAI 166 >gi|291616692|ref|YP_003519434.1| YbeY [Pantoea ananatis LMG 20103] gi|291151722|gb|ADD76306.1| YbeY [Pantoea ananatis LMG 20103] gi|327393117|dbj|BAK10539.1| hypothetical UPF0054 protein YbeY [Pantoea ananatis AJ13355] Length = 157 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 88/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E D + + + AV+ + E+++ D Sbjct: 1 MSDVILDLQLACEQT---DNLPTESQFQRWLEAAVTPFQPES--------EVTIRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA GK E H Sbjct: 50 ESHELNLTYRGKDKPTNVLSFPFE--APPGIELPLLGDLIICRQVVEQEAQEQGKTPEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH++D +A MEG+E I+ LG DPY + Sbjct: 108 WAHMVIHGTLHLLGYDHIEDSEAEEMEGIETEIMLALGYPDPYISE 153 >gi|167643996|ref|YP_001681659.1| hypothetical protein Caul_0023 [Caulobacter sp. K31] gi|189030198|sp|B0T157|RRMF_CAUSK RecName: Full=Probable rRNA maturation factor gi|167346426|gb|ABZ69161.1| protein of unknown function UPF0054 [Caulobacter sp. K31] Length = 162 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 82/158 (51%), Gaps = 6/158 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L + I +E+ W E + +A ++ ++ + + ++ D ++TL Sbjct: 3 LTVDIEIEDEAWTKA---EPEVEALVWRAAQAVLDAHEDIEGHG--IVILLADDDSVQTL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N ++R D TNVLSFP+ S +GDI LA+ + + EA GK +HL HL+ Sbjct: 58 NRDFRQKDYATNVLSFPS-VTSPGANPEGQIGDIALAFGVCQREAAEQGKSLAHHLQHLV 116 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HG LHLLGYDH DD DA ME ER IL L I DPY Sbjct: 117 AHGVLHLLGYDHQDDADAEAMEAFEREILAGLDIPDPY 154 >gi|307249902|ref|ZP_07531876.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858091|gb|EFM90173.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 163 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 88/166 (53%), Gaps = 8/166 (4%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P +DLQIA EN + + +A+++ F E+++ D Sbjct: 1 MTTPIIDLQIAAEN---SENLPSLEQFTQWVQRALAHEAQTEDF---PETEITIRIVDEA 54 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP +G +LGD+++ +++E EA E+H Sbjct: 55 ESHELNLTYRGKDKPTNVLSFPFEV--PEGIELPLLGDLIICRQVVEKEAQEQQISLESH 112 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL IHG LHLLGYDH++D +A MEGLE I++ LG DPY + Sbjct: 113 WTHLAIHGTLHLLGYDHIEDAEAEEMEGLETEIMQSLGFEDPYISE 158 >gi|32033745|ref|ZP_00134040.1| COG0319: Predicted metal-dependent hydrolase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208174|ref|YP_001053399.1| putative metalloprotease [Actinobacillus pleuropneumoniae L20] gi|165976112|ref|YP_001651705.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150005|ref|YP_001968530.1| hypothetical protein APP7_0736 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263336|ref|ZP_07544954.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|171855089|sp|A3N058|RRMF_ACTP2 RecName: Full=Probable rRNA maturation factor gi|238692332|sp|B3GXC9|RRMF_ACTP7 RecName: Full=Probable rRNA maturation factor gi|126096966|gb|ABN73794.1| hypothetical protein APL_0694 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876213|gb|ABY69261.1| hypothetical protein APJL_0692 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915136|gb|ACE61388.1| hypothetical protein APP7_0736 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871398|gb|EFN03124.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 163 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 88/166 (53%), Gaps = 8/166 (4%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P +DLQIA EN + + +A+++ F E+++ D Sbjct: 1 MTTPIIDLQIAAEN---SENLPSLAQFTQWVQRALAHEAQTEDF---PETEITIRIVDEA 54 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP +G +LGD+++ +++E EA E+H Sbjct: 55 ESYELNLTYRGKDKPTNVLSFPFEV--PEGIELPLLGDLIICRQVVEKEAQEQQISLESH 112 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL IHG LHLLGYDH++D +A MEGLE I++ LG DPY + Sbjct: 113 WAHLAIHGTLHLLGYDHIEDAEAEEMEGLETEIMQSLGFEDPYISE 158 >gi|154254050|ref|YP_001414874.1| hypothetical protein Plav_3619 [Parvibaculum lavamentivorans DS-1] gi|171769693|sp|A7HZ84|RRMF_PARL1 RecName: Full=Probable rRNA maturation factor gi|154158000|gb|ABS65217.1| protein of unknown function UPF0054 [Parvibaculum lavamentivorans DS-1] Length = 185 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 86/168 (51%), Gaps = 15/168 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L++++ E W +A + + + EL +V D + L Sbjct: 22 LEIEVLREAGDWESSTD------ETVRRAAEHAYAVARG--DESAELCIVLGDDALVAKL 73 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSS-------LMLGDIVLAYEIIEIEANVLGKEFE 123 N YRG + PTNVLSFP A G +LGD+VLA E I EA K+F Sbjct: 74 NKAYRGKEGPTNVLSFPAAEMPDTGAPEAVFGGATPLLGDVVLARETIAREALDQNKKFA 133 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HL HL +HG LHLLG+DH++D DA ME LER ILEDLGI DPY D Sbjct: 134 DHLSHLTVHGVLHLLGHDHMEDVDADEMEALERDILEDLGIADPYGAD 181 >gi|319786434|ref|YP_004145909.1| hypothetical protein Psesu_0825 [Pseudoxanthomonas suwonensis 11-1] gi|317464946|gb|ADV26678.1| protein of unknown function UPF0054 [Pseudoxanthomonas suwonensis 11-1] Length = 163 Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 59/168 (35%), Positives = 81/168 (48%), Gaps = 10/168 (5%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + + L +AV A+ + A A++ I +L++ D+ Sbjct: 1 MTKGPVRLDVAVSYAVPRAGVPAAQSFRKWVAAALAGRIR--------EADLAIRIVDAP 52 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + LN YRG D TNVLSFP G +LGD+V+ ++ EA GK Sbjct: 53 EGQALNRHYRGKDYATNVLSFPAEMPEGLPKGIKFPLLGDLVICAPVVAREAAEQGKPLA 112 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H HL +HG LHLLG+DH DDK+A ME LER IL LG+ DPY + Sbjct: 113 AHYAHLTVHGTLHLLGWDHEDDKEAEAMEQLEREILAGLGLPDPYAAE 160 >gi|254467206|ref|ZP_05080617.1| conserved hypothetical protein TIGR00043 [Rhodobacterales bacterium Y4I] gi|206688114|gb|EDZ48596.1| conserved hypothetical protein TIGR00043 [Rhodobacterales bacterium Y4I] Length = 170 Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 18/173 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L I +E+A W E + + + + E+SL+ D I L Sbjct: 1 MTLDITIEDARWQQAGLEPLAEEA------VAAVLAHFGLDAEMCEISLLGCDDAEIAGL 54 Query: 71 NFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N E+R PTNVLS+P D + LGDI ++Y EA+ Sbjct: 55 NAEFREKPVPTNVLSWPAEERAADTDGGTPVPPEPDFTGEIPLGDIAISYGTCAREASEA 114 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 G+ +H HLI+HG LHLLGYDH+ D+DA +MEG+E IL +GI +PY V+ Sbjct: 115 GRTLADHARHLIVHGTLHLLGYDHIRDRDAALMEGIEVLILGKMGIANPYIVE 167 >gi|307545981|ref|YP_003898460.1| hypothetical protein HELO_3391 [Halomonas elongata DSM 2581] gi|307218005|emb|CBV43275.1| K07042 [Halomonas elongata DSM 2581] Length = 171 Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 61/160 (38%), Positives = 87/160 (54%), Gaps = 12/160 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P +D Q+A+E + L V ++ E EL++ F D+ Sbjct: 5 PDIDRQVALEVEDLPRQADLEAWVTGVLSR----------HPDETRHELTIRFVDAEESR 54 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN +YR D+PTNVLSFP S + +LGD+V+ + ++ EA K +H H Sbjct: 55 HLNRDYRDRDRPTNVLSFPFE--SPPTVALPLLGDLVICHPVVVDEAETQHKSLLDHYAH 112 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +++HG LHLLGYDH++D +A VME LER IL +LGI DPY Sbjct: 113 MVVHGTLHLLGYDHIEDDEAEVMEALEREILAELGIADPY 152 >gi|149377494|ref|ZP_01895235.1| predicted metal-dependent hydrolase [Marinobacter algicola DG893] gi|149358186|gb|EDM46667.1| predicted metal-dependent hydrolase [Marinobacter algicola DG893] Length = 157 Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 15/166 (9%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ +DLQ AVE +++ + + EN E+++ S Sbjct: 1 MSELTVDLQRAVEAPGVPEDVEFERWARAAW-------------LGENPSEVTIRIVASD 47 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN +YRG PTNVLSFP + G + + GD+++ ++E EA K + H Sbjct: 48 ESADLNSQYRGKSGPTNVLSFPFE--APAGITVPLAGDLIICAPVVEKEATEQQKTLKEH 105 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHL GYDH++D DA VME LE +L LG ++PYE + Sbjct: 106 WAHMVVHGMLHLQGYDHIEDNDAEVMEALEIRLLGQLGFSNPYETE 151 >gi|307245551|ref|ZP_07527638.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254505|ref|ZP_07536341.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258964|ref|ZP_07540695.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853610|gb|EFM85828.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862555|gb|EFM94513.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866988|gb|EFM98845.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 163 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 87/166 (52%), Gaps = 8/166 (4%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P +DLQIA EN + + +A+++ F E+++ D Sbjct: 1 MTTPIIDLQIAAEN---SENLPSLAQFTQWVQRALAHEAQTEDF---PETEITIRIVDEA 54 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DK TNVLSFP +G +LGD+++ +++E EA E+H Sbjct: 55 ESHELNLTYRGKDKSTNVLSFPFEV--PEGIELPLLGDLIICRQVVEKEAQEQQISLESH 112 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL IHG LHLLGYDH++D +A MEGLE I++ LG DPY + Sbjct: 113 WAHLAIHGTLHLLGYDHIEDAEAEEMEGLETEIMQSLGFEDPYISE 158 >gi|300722330|ref|YP_003711615.1| putative metal-dependent hydrolase [Xenorhabdus nematophila ATCC 19061] gi|297628832|emb|CBJ89410.1| putative metal-dependent hydrolase [Xenorhabdus nematophila ATCC 19061] Length = 155 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 92/166 (55%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQIA EN E E +F + + ++ + + E+++ D Sbjct: 1 MSSVILDLQIACENPKGLPE-------EALFQRWLEGVLPQF----QAESEVTIRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVL+FP S +LGD+++ +++E EA K E H Sbjct: 50 ESHDLNLTYRGKDKPTNVLTFPFE--SPPEIELPLLGDLIICRQVVEKEAEEQQKTVEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH+D+ +A ME LE IL+ +G +DPY+++ Sbjct: 108 WAHMVVHGSLHLLGYDHIDNDEAEEMEFLETEILKKMGYSDPYQIE 153 >gi|163757741|ref|ZP_02164830.1| hypothetical protein HPDFL43_20062 [Hoeflea phototrophica DFL-43] gi|162285243|gb|EDQ35525.1| hypothetical protein HPDFL43_20062 [Hoeflea phototrophica DFL-43] Length = 171 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 67/163 (41%), Positives = 91/163 (55%), Gaps = 1/163 (0%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI-SKGYFVKENIVELSLVFTDSHRI 67 P L +A+E WGDE + L + A ++L ++ E+SLV D + Sbjct: 5 PLFSLALALEAGEWGDEARIEALAQTALEAAAADLTRNEAQPFPSEPPEVSLVLADDAMM 64 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 +N E+R KPTNVLSFP + MLGDI+LA E IE EA LGK + H+ Sbjct: 65 TGINSEWRAQAKPTNVLSFPAFPLTPGAMPGPMLGDIILARETIEREAGDLGKPVDEHIT 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HL++HGFLHL GYDH+ ++DA ME +E IL L ++DPY Sbjct: 125 HLVVHGFLHLFGYDHIQNEDAEKMEAIETRILTSLNLSDPYGD 167 >gi|319408020|emb|CBI81674.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 158 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 89/159 (55%), Gaps = 5/159 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + I +E++ W +E L + + +L + + ELSL+FT+ I Sbjct: 1 MITIDITIEDSEWDNEDVLYDITTKALTTTMHHL-----SLNQVTSELSLLFTNDDHIAQ 55 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N ++R +KPTNVLSFP MLGDI++A E I EA GK F++HL H+ Sbjct: 56 INAQWRSQNKPTNVLSFPAFPLKVGQNPKPMLGDIIIARETIMREAKEEGKSFQDHLTHM 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 I+HG LHLLGY+H + +A ME LER IL L I +PY Sbjct: 116 IVHGLLHLLGYNHETNDEANQMEMLEREILSKLSIKNPY 154 >gi|127513853|ref|YP_001095050.1| putative metalloprotease [Shewanella loihica PV-4] gi|171855250|sp|A3QH43|RRMF_SHELP RecName: Full=Probable rRNA maturation factor gi|126639148|gb|ABO24791.1| protein of unknown function UPF0054 [Shewanella loihica PV-4] Length = 157 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 14/161 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+A + + + + + E+++ D + Sbjct: 9 LHLDLQVATQAEQLPSQEEFESWVRLALGNVM------------PEAEMTIRLVDEAESQ 56 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YRG DKPTNVLSFP S +LGD+V+ ++E EA + GK H H Sbjct: 57 QLNHTYRGKDKPTNVLSFPFE--SPPEVELPLLGDLVICVPVVEQEAEIQGKSLTAHWAH 114 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +++HG LHLLGYDH+ D +A ME LE ++E LG +PY+ Sbjct: 115 MVVHGCLHLLGYDHIIDSEAEEMESLETQLIESLGFPNPYK 155 >gi|260597075|ref|YP_003209646.1| metal-binding heat shock protein [Cronobacter turicensis z3032] gi|260216252|emb|CBA29173.1| Putative metalloprotease ESA_02677 [Cronobacter turicensis z3032] Length = 155 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 87/167 (52%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E+ DE +T V + E+++ D Sbjct: 1 MSQVILDLQVACEDTSGLPDEAQFQTWLNAVV------------PQFQEESEVTVRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG+DKPTNVLSFP + G +LGD+++ +++E EA K Sbjct: 49 AESHDLNLTYRGMDKPTNVLSFPFE--APPGIEMPLLGDLIICRQVVEREAREQEKPLAA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A MEG+E I+ LG +DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMEGIETEIMLALGFDDPYIAE 153 >gi|259415656|ref|ZP_05739577.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] gi|259348886|gb|EEW60648.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] Length = 170 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 66/173 (38%), Positives = 90/173 (52%), Gaps = 18/173 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L + +E+A W D L EV A ++ L + + E++++ D RI L Sbjct: 1 MILDVVIEDARW-DAAALNKQAEVAVAATLAYL-----ELLDEDWEVTVLGCDDARIADL 54 Query: 71 NFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N E+R KPTNVLS+P D LGDI ++YE EA + Sbjct: 55 NAEFREKPKPTNVLSWPAQELAAAQEGGQPAPPEVDFMGDAALGDIAISYETCMKEAEIA 114 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K E+H+ HL++HG LHLLGYDH+ D DA VME LE IL LGI DPY ++ Sbjct: 115 QKPPEDHIRHLLVHGTLHLLGYDHIRDGDATVMETLEVGILGKLGIPDPYIIE 167 >gi|194365130|ref|YP_002027740.1| putative metalloprotease [Stenotrophomonas maltophilia R551-3] gi|238693470|sp|B4SQK2|RRMF_STRM5 RecName: Full=Probable rRNA maturation factor gi|194347934|gb|ACF51057.1| protein of unknown function UPF0054 [Stenotrophomonas maltophilia R551-3] Length = 161 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 56/138 (40%), Positives = 75/138 (54%), Gaps = 6/138 (4%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--S 93 F K V+ + +L++ D+ ++LN YRG D TNVLSFP Sbjct: 27 FRKWVAAALKGRI----READLAIRVVDAKEGQSLNRHYRGKDYATNVLSFPADVPEGLP 82 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 G +LGD+V+ ++ EA+ GK H HL +HG LHLLG+DH DDK+A ME Sbjct: 83 KGVKFPLLGDLVICAPVVAREADEQGKALNAHYAHLTVHGVLHLLGWDHEDDKEAEAMEQ 142 Query: 154 LERSILEDLGINDPYEVD 171 LER IL +LGI DPY + Sbjct: 143 LEREILAELGIADPYAGE 160 >gi|270263721|ref|ZP_06191990.1| putative metalloprotease YbeY [Serratia odorifera 4Rx13] gi|270042605|gb|EFA15700.1| putative metalloprotease YbeY [Serratia odorifera 4Rx13] Length = 157 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 88/167 (52%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQIA ++ D E F + + ++ + + E+++ D Sbjct: 1 MSQVILDLQIACADSNGLPD--------EATFQRWLEGVLPQF----QEEAEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA K E Sbjct: 49 AESNELNLTYRGKDKPTNVLSFPFE--APPGIELPLLGDLIICRQVVEQEAVEQDKALEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMHGLGYPDPYLAE 153 >gi|319403638|emb|CBI77223.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 158 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 67/159 (42%), Positives = 91/159 (57%), Gaps = 5/159 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + I +E+A W +E L + E + +L + E ELSL+FTD + Sbjct: 1 MISIDITIESAKWNNEKMLYNITEKALVTTLQHL-----SLNEITSELSLLFTDDTHMAQ 55 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N +R +KPTNVLSFP + LMLGDIV+A E + EA K F++HL H+ Sbjct: 56 INARWRNHNKPTNVLSFPAFPLKAGQNPKLMLGDIVIAQETVMREAEEEKKSFQDHLTHI 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IIHG LHLLGYDH + +A ME LE+ IL+ L I DPY Sbjct: 116 IIHGILHLLGYDHETNDEANQMEKLEKEILQKLTIKDPY 154 >gi|218508193|ref|ZP_03506071.1| hypothetical protein RetlB5_11662 [Rhizobium etli Brasil 5] Length = 156 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 90/148 (60%), Gaps = 1/148 (0%) Query: 23 GDEIHLRTLCEVVFAKAVSNL-ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 +E L C V A L S+ E+SLVFTD I+ +N E+RG DK T Sbjct: 1 PEEETLLAFCGRVLGAAAVYLRDSEKQPFPTMPPEVSLVFTDDASIQDINAEWRGKDKAT 60 Query: 82 NVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 NVLSFP MLGDI++A E +E EA+ L K F++HL HL++HGFLHLLGYD Sbjct: 61 NVLSFPAFPVQPGKMPGPMLGDIIIARETVEREAHELEKSFDDHLTHLLVHGFLHLLGYD 120 Query: 142 HVDDKDACVMEGLERSILEDLGINDPYE 169 H++ +A +MEGLE IL LG++DPYE Sbjct: 121 HMNSAEAEIMEGLETRILAQLGLSDPYE 148 >gi|50120256|ref|YP_049423.1| putative metalloprotease [Pectobacterium atrosepticum SCRI1043] gi|59799108|sp|Q6D7K8|RRMF_ERWCT RecName: Full=Probable rRNA maturation factor gi|49610782|emb|CAG74227.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 159 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 88/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQIA E A E E F + + ++ + V E+++ D Sbjct: 1 MSQVILDLQIASEQAQGLPE-------EKDFQRWLEGVLPQFQEVS----EVTIRIVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + +LGD+++ +++E EA K E H Sbjct: 50 ESRDLNNTYRGKDKPTNVLSFPFE--APPEVELPLLGDLIICRQVVEREAVEQEKTVEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDSEAEEMEALETEIMQSMGYADPYLAE 153 >gi|254448604|ref|ZP_05062063.1| hypothetical protein GP5015_1989 [gamma proteobacterium HTCC5015] gi|198261793|gb|EDY86079.1| hypothetical protein GP5015_1989 [gamma proteobacterium HTCC5015] Length = 155 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 66/162 (40%), Positives = 86/162 (53%), Gaps = 10/162 (6%) Query: 9 PRLDLQIAVENALW-GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 +LD+ +V+ A W E +R A++ S G V +EL L Sbjct: 3 LQLDIDPSVQGARWLPSEADVREWTSATL-AAITRSFSAGVEVSFKWLELEL-------S 54 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 ++LN +YRG D PTNVLSFP DG L LGDI + ++E EA GK H Sbjct: 55 QSLNCDYRGKDSPTNVLSFPMQMPPIDGELEL-LGDIAICPAVVEREAGEQGKPLRAHWA 113 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 H+++HG LHL GYDH++D +A ME LER IL LGI DPY Sbjct: 114 HMVVHGMLHLCGYDHIEDTEALEMEALERDILASLGIEDPYR 155 >gi|117617448|ref|YP_857734.1| hypothetical protein AHA_3243 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|145558811|sp|A0KN83|RRMF_AERHH RecName: Full=Probable rRNA maturation factor gi|117558855|gb|ABK35803.1| conserved hypothetical protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 154 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 53/135 (39%), Positives = 75/135 (55%), Gaps = 2/135 (1%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 + + + E+++ D LN YRG DKPTNVLSFP + G Sbjct: 20 EAQLQGWLDGTILGFQQEAEVTVRIVDEAESNELNLTYRGKDKPTNVLSFPFE--APPGL 77 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 +LGD+V+ +++E EA GK H H+++HG LHLLGYDH++D +A ME LER Sbjct: 78 ELPLLGDLVICRQVVEREAAEQGKPLMAHWAHMVVHGSLHLLGYDHIEDDEAEEMETLER 137 Query: 157 SILEDLGINDPYEVD 171 I+++LG DPY D Sbjct: 138 DIMQELGFADPYLND 152 >gi|303252387|ref|ZP_07338553.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247668|ref|ZP_07529709.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648846|gb|EFL79036.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855836|gb|EFM87998.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 163 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 88/166 (53%), Gaps = 8/166 (4%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P +DLQIA EN + + +A+++ F E+++ D Sbjct: 1 MTTPIIDLQIAAEN---SENLPSLAQFTQWVQRALAHEAQTEDF---PETEITIRIVDEA 54 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP +G +LGD+++ +++E EA E+H Sbjct: 55 ESYELNLTYRGKDKPTNVLSFPFEV--PEGIELPLLGDLIICRQVVEKEAQEQQISLESH 112 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL IHG LHLLGYDH++D +A MEGLE I++ LG DPY + Sbjct: 113 WAHLAIHGTLHLLGYDHIEDVEAEEMEGLETEIMQSLGFEDPYISE 158 >gi|227327388|ref|ZP_03831412.1| putative metalloprotease [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 159 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 88/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQIA E A E E F + + ++ + V E+++ D Sbjct: 1 MSQVILDLQIASEQAQGLPE-------EKDFQRWLEGVLPQFQEVS----EVTIRIVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + +LGD+++ +++E EA K E H Sbjct: 50 ESRDLNNTYRGKDKPTNVLSFPFE--APPEVELPLLGDLIICRQVVEREAAEQEKTVEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDSEAEEMEALETEIMQGMGYADPYLAE 153 >gi|322514461|ref|ZP_08067501.1| metal-dependent hydrolase [Actinobacillus ureae ATCC 25976] gi|322119624|gb|EFX91692.1| metal-dependent hydrolase [Actinobacillus ureae ATCC 25976] Length = 163 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 87/166 (52%), Gaps = 8/166 (4%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P +DLQIA EN + + +A+++ F E+++ D Sbjct: 1 MTTPIIDLQIAAEN---SENLPSLEQFTQWVQRALAHKAQTEDF---PETEITIRIVDEA 54 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP +G +LGD+++ ++E EA E+H Sbjct: 55 ESHELNLTYRGKDKPTNVLSFPFEV--PEGIELPLLGDLIICRHVVEKEAQEQQISLESH 112 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL IHG LHLLGYDH++D +A MEGLE I++ LG DPY + Sbjct: 113 WAHLAIHGTLHLLGYDHIEDAEAEEMEGLETEIMQSLGFEDPYISE 158 >gi|218889735|ref|YP_002438599.1| putative metalloprotease [Pseudomonas aeruginosa LESB58] gi|226696066|sp|B7V9D4|RRMF_PSEA8 RecName: Full=Probable rRNA maturation factor gi|218769958|emb|CAW25720.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58] Length = 160 Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 60/163 (36%), Positives = 77/163 (47%), Gaps = 14/163 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+A E R CE+ + EL++ D Sbjct: 3 LELDLQVASAAPDLPSEAQFRAWCELALRQ-------------RPESELTIRLVDEAEGL 49 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVLSF A + +LGD+V+ ++ EA K + H H Sbjct: 50 ELNSTYRHKDYATNVLSF-LADVPDELLDIPLLGDLVICAPVVAREALEQRKPLQAHWAH 108 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 L+IHG LHLLGYDH+DD +A ME LER +L +LG DPY D Sbjct: 109 LVIHGCLHLLGYDHIDDAEAEEMETLERELLAELGHPDPYACD 151 >gi|300113053|ref|YP_003759628.1| hypothetical protein Nwat_0337 [Nitrosococcus watsonii C-113] gi|299538990|gb|ADJ27307.1| protein of unknown function UPF0054 [Nitrosococcus watsonii C-113] Length = 153 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 8/159 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + ++ A+ L+ + A+ N + E+++ TD + L Sbjct: 1 MSIAVQIQYAVPRINAPLQADFQRWVEAALLN--------QSKAGEVTIRVTDENEAAEL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YR + TN+LSFP S +LGD+++ ++ EA K+ ++H HL+ Sbjct: 53 NRRYRRKEGATNILSFPFEIPSCVPFDIPLLGDLIICAPVVAREALEQAKKEQDHWAHLV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLG+DH + +A ME LE +ILE LG +DPYE Sbjct: 113 VHGVLHLLGFDHQQEVEAQQMEALEVTILESLGYSDPYE 151 >gi|227114978|ref|ZP_03828634.1| putative metalloprotease [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 159 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 57/166 (34%), Positives = 87/166 (52%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQIA E E E F + + ++ + + E+++ D Sbjct: 1 MSQVILDLQIASEQTQGLPE-------EKDFQRWLEGVLPQFQEIS----EVTIRIVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + +LGD+++ +++E E+ K E H Sbjct: 50 ESRDLNNTYRGKDKPTNVLSFPFE--APPEVELPLLGDLIICRQVVERESAEQEKTVEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDSEAEEMEALETEIMQSMGYADPYLAE 153 >gi|152979599|ref|YP_001345228.1| putative metalloprotease [Actinobacillus succinogenes 130Z] gi|171704389|sp|A6VQP6|RRMF_ACTSZ RecName: Full=Probable rRNA maturation factor gi|150841322|gb|ABR75293.1| protein of unknown function UPF0054 [Actinobacillus succinogenes 130Z] Length = 156 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 57/166 (34%), Positives = 80/166 (48%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + +DLQI E+ + AV E+++ D Sbjct: 2 MKGVIIDLQIVSED---QTNLPTPEQFTQWATAAVRAEAL--------EPEITIRIVDEA 50 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG D+PTNVLSFP + +LGD+V+ +++E EA GK H Sbjct: 51 ESHDLNLTYRGKDRPTNVLSFPFE--CPEEVELPLLGDLVICRQVVEREAEQQGKPLPAH 108 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ +LG DPY D Sbjct: 109 WAHMVVHGCLHLLGYDHIEDDEAVEMESLETQIMTELGFEDPYSYD 154 >gi|319898346|ref|YP_004158439.1| hypothetical protein BARCL_0168 [Bartonella clarridgeiae 73] gi|319402310|emb|CBI75849.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 158 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 67/159 (42%), Positives = 93/159 (58%), Gaps = 5/159 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + + +E+A WGDE L + E + +L + E ELSL+FTD + Sbjct: 1 MIAIDMTIESAKWGDEKMLYNITEKALTTTLQHL-----SLNEVRSELSLLFTDDKHMAQ 55 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N ++R +K TNVLSFP+ + LMLGDI++A E I EA K F++HL H+ Sbjct: 56 INAQWRHQNKSTNVLSFPSFPLKAGQNPGLMLGDIIIAQETIMREAEEEKKSFQDHLTHI 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IIHG LHLLGY+H + +A ME LER IL+ L I DPY Sbjct: 116 IIHGILHLLGYNHETNDEANQMEKLEREILQKLSIKDPY 154 >gi|145298101|ref|YP_001140942.1| hypothetical protein ASA_1072 [Aeromonas salmonicida subsp. salmonicida A449] gi|166228140|sp|A4SJX2|RRMF_AERS4 RecName: Full=Probable rRNA maturation factor gi|142850873|gb|ABO89194.1| conserved hypothetical protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 154 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 53/135 (39%), Positives = 75/135 (55%), Gaps = 2/135 (1%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 + + + E+++ D LN YRG DKPTNVLSFP + G Sbjct: 20 EAQLQGWLDGTILGFQEEAEVTVRIVDEAESRELNLTYRGKDKPTNVLSFPFE--APPGM 77 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 +LGD+V+ +++E EA K E H H+++HG LHLLGYDH++D +A ME LER Sbjct: 78 ELPLLGDLVICRQVVEQEATEQNKPLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEQLER 137 Query: 157 SILEDLGINDPYEVD 171 I+++LG DPY D Sbjct: 138 DIMQELGFADPYLND 152 >gi|253687589|ref|YP_003016779.1| hypothetical protein PC1_1195 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259645749|sp|C6DBX6|RRMF_PECCP RecName: Full=Probable rRNA maturation factor gi|251754167|gb|ACT12243.1| protein of unknown function UPF0054 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 159 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 88/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQIA E A E E F + + ++ + V E+++ D Sbjct: 1 MSQVILDLQIASEQAQGLPE-------EKDFQRWLEGVLPQFQEVS----EVTIRIVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + +LGD+++ +++E EA K E H Sbjct: 50 ESRDLNNTYRGKDKPTNVLSFPFE--APPEVELPLLGDLIICRQVVEQEAAEQEKTVEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDSEAEEMEALETEIMQSMGYADPYLAE 153 >gi|261822379|ref|YP_003260485.1| metalloprotease [Pectobacterium wasabiae WPP163] gi|261606392|gb|ACX88878.1| protein of unknown function UPF0054 [Pectobacterium wasabiae WPP163] Length = 159 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 88/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQIA E A E E F + + ++ + V E+++ D Sbjct: 1 MSQVILDLQIASEQAQGLPE-------EKDFQRWLEGVLPQFQEVS----EVTIRIVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + +LGD+++ +++E EA K E H Sbjct: 50 ESRDLNNTYRGKDKPTNVLSFPFE--APPEVELPLLGDLIICRQVVEREAAEQEKTVEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDSEAEEMEALETEIMQSMGYTDPYLAE 153 >gi|85705230|ref|ZP_01036329.1| hypothetical protein ROS217_17217 [Roseovarius sp. 217] gi|85670103|gb|EAQ24965.1| hypothetical protein ROS217_17217 [Roseovarius sp. 217] Length = 162 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 80/165 (48%), Gaps = 16/165 (9%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 + +E+ W L L E + +L + E+S++ D RI LN + Sbjct: 4 DVVIEDDRWQ-AAGLEHLAERAARATLEHL-----SLDPEAWEISVLGCDDARIAALNED 57 Query: 74 YRGIDKPTNVLSFPTAFAS----------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 +R +PTNVLS+P+ LGDI +A+E EA K Sbjct: 58 FRDKPQPTNVLSWPSEERGAEAAGVRPGLPVSGPDPELGDIAIAWETCLREAAEGDKSLA 117 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +H+ HLI+H LHLLGYDH+ D+DA +ME E IL LG++DPY Sbjct: 118 DHVTHLIVHAVLHLLGYDHLRDQDATLMETTEVEILGKLGVSDPY 162 >gi|156934830|ref|YP_001438746.1| putative metalloprotease [Cronobacter sakazakii ATCC BAA-894] gi|166228427|sp|A7MQS7|RRMF_ENTS8 RecName: Full=Probable rRNA maturation factor gi|156533084|gb|ABU77910.1| hypothetical protein ESA_02677 [Cronobacter sakazakii ATCC BAA-894] Length = 155 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 88/167 (52%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVENA-LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E+ DE +T V + E+++ D Sbjct: 1 MSQVILDLQVACEDTTGLPDEAQFQTWLNAVV------------PQFQEESEVTVRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG+DKPTNVLSFP + G +LGD+++ +++E EA K E Sbjct: 49 AESHDLNLTYRGMDKPTNVLSFPFE--APPGIDMPLLGDLIICRQVVEREAREQEKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A MEG+E I+ LG +DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMEGIETEIMLALGFDDPYIAE 153 >gi|254295427|ref|YP_003061450.1| hypothetical protein Hbal_3085 [Hirschia baltica ATCC 49814] gi|254043958|gb|ACT60753.1| protein of unknown function UPF0054 [Hirschia baltica ATCC 49814] Length = 161 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 60/165 (36%), Positives = 91/165 (55%), Gaps = 10/165 (6%) Query: 7 NLPRLDLQIAVENALWGDEIHL-RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 N L + + +E+ W + + E A G + ++ T+ Sbjct: 4 NPVILSVDLRIEDDGWSVALDDCEAIIETALEAAAQKTGESGL--------VEVLLTNDA 55 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 ++TLN ++RG DKPT+VLSFP AS G LGD+ L ++ + +++ LG++F H Sbjct: 56 EMQTLNAQWRGKDKPTDVLSFPAEGASMPGMQ-TFLGDLALGLDVAKADSDKLGRDFRLH 114 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 ++HL++HGFLHLLGYDH+ D +A MEGLE IL LG+ DPY Sbjct: 115 VMHLLVHGFLHLLGYDHMSDDEANTMEGLEAQILAPLGLPDPYGD 159 >gi|190573586|ref|YP_001971431.1| putative metalloprotease [Stenotrophomonas maltophilia K279a] gi|229553943|sp|B2FJ87|RRMF_STRMK RecName: Full=Probable rRNA maturation factor gi|190011508|emb|CAQ45126.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a] Length = 161 Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats. Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 10/161 (6%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L +A+ AL + A A+ I +L++ D+ ++LN Sbjct: 8 LDVAISYALPRAGLPAAVSFRRWVAAALKGRIR--------EADLAIRVVDAKEGQSLNR 59 Query: 73 EYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 YRG D TNVLSFP G +LGD+V+ ++ EA+ GK H HL Sbjct: 60 HYRGKDYATNVLSFPAEVPEGLPKGVKFPLLGDLVICAPVVAREADEQGKALNAHYAHLT 119 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLG+DH DDK+A ME LER IL +LGI+DPY + Sbjct: 120 VHGVLHLLGWDHEDDKEAEAMEQLEREILAELGIDDPYAGE 160 >gi|15602910|ref|NP_245982.1| putative metalloprotease [Pasteurella multocida subsp. multocida str. Pm70] gi|13431990|sp|P57900|RRMF_PASMU RecName: Full=Probable rRNA maturation factor gi|12721379|gb|AAK03129.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 158 Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 87/166 (52%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + +DLQ+ EN D + + +A+ S VE+++ D Sbjct: 1 MKQVIIDLQLVCENT---DNLPSEAQIQAWANRAIQPEFS--------DVEMTVRIVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP D +LGD+V+ +++E EA GK H Sbjct: 50 ESHDLNLTYRGKDKPTNVLSFPFE--CPDEVELSLLGDLVICRQVVEKEAEEQGKPLMAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A MEGLE I++ LG +DPY + Sbjct: 108 WAHMVVHGCLHLLGYDHIEDAEAEEMEGLETEIMQSLGFDDPYLSE 153 >gi|307256716|ref|ZP_07538495.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307261160|ref|ZP_07542836.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306864764|gb|EFM96668.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306869142|gb|EFN00943.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 163 Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 87/166 (52%), Gaps = 8/166 (4%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P +DLQIA EN + + +A+++ F E+++ D Sbjct: 1 MTTPIIDLQIAAEN---SENLPSLAQFTQWVQRALAHEAQTEDF---PETEITIRIVDEA 54 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DK TNVLSFP +G +LGD+++ +++E EA E+H Sbjct: 55 ESHELNLTYRGKDKSTNVLSFPFEV--PEGIELPLLGDLIICRQVVEKEAQEQQISLESH 112 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL IHG LHLLGYDH++D +A MEGLE I++ LG DPY + Sbjct: 113 WAHLAIHGTLHLLGYDHIEDVEAEEMEGLETEIMQSLGFEDPYISE 158 >gi|300692458|ref|YP_003753453.1| metalloprotease [Ralstonia solanacearum PSI07] gi|299079518|emb|CBJ52196.1| Putative metalloprotease [Ralstonia solanacearum PSI07] Length = 255 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 73/161 (45%), Gaps = 10/161 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L L + V++ DE+ K + I+ F +L++ F T Sbjct: 104 MLTLDLTVQHG---DELKAAARKACPKQKDIEAWIAPALFAD---AQLNVRFVGEEEGRT 157 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D TNVL+F + D + DIVL ++E EA GK H HL Sbjct: 158 LNRTYRDKDYATNVLTFSYSETEDD----PVSADIVLCCPVVEKEAKDQGKPLRAHYAHL 213 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 I+HG LH GYDH D +A MEGLE +L LG DPY Sbjct: 214 IVHGALHAQGYDHEDPAEAKEMEGLETEVLAGLGFPDPYAD 254 >gi|325920327|ref|ZP_08182264.1| hypothetical protein TIGR00043 [Xanthomonas gardneri ATCC 19865] gi|325549189|gb|EGD20106.1| hypothetical protein TIGR00043 [Xanthomonas gardneri ATCC 19865] Length = 166 Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats. Identities = 64/173 (36%), Positives = 84/173 (48%), Gaps = 10/173 (5%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M V + + L +AV AL + A A+ I +L++ Sbjct: 1 MLVFPMTKGPIRLDVAVSYALPRAGLPSAVSFRKWVAAALKGRIR--------EADLAVR 52 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVL 118 D +LN YRG D TNVLSFP G +LGD+V+ ++ EA Sbjct: 53 IVDEKEGCSLNHHYRGKDYATNVLSFPAELPEGLPKGVKMPLLGDLVICAPVVAREAAEQ 112 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK +H HL +HG LHLLG+DH DDK+A ME LER IL DLGI+DPY + Sbjct: 113 GKSLASHYAHLTVHGTLHLLGWDHADDKEADAMEQLEREILADLGIDDPYAGE 165 >gi|319406554|emb|CBI80196.1| conserved hypothetical protein [Bartonella sp. 1-1C] Length = 158 Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats. Identities = 67/159 (42%), Positives = 91/159 (57%), Gaps = 5/159 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + I +E+A W +E L + E + +L + E ELSL+FTD + Sbjct: 1 MVSIDITIESAKWNNEKMLYNITEKALVTTLQHL-----SLNEITSELSLLFTDDTHMAQ 55 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N +R +KPTNVLSFP + LMLGDIV+A E + EA K F++HL H+ Sbjct: 56 INARWRNHNKPTNVLSFPAFPLKAGQNPKLMLGDIVIAQETVMREAEEEKKSFQDHLTHI 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IIHG LHLLGYDH + +A ME LE+ IL+ L I DPY Sbjct: 116 IIHGILHLLGYDHETNDEANQMEKLEKEILQKLTIKDPY 154 >gi|118590491|ref|ZP_01547893.1| hypothetical protein SIAM614_02911 [Stappia aggregata IAM 12614] gi|118436954|gb|EAV43593.1| hypothetical protein SIAM614_02911 [Stappia aggregata IAM 12614] Length = 189 Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 88/158 (55%), Gaps = 5/158 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + +++E W E L + A A + + E+SL+FTD I LN Sbjct: 29 IDLSIEAGDWPAEAQLEAITAKAVAAAFAGADLEVL----EGTEVSLLFTDDASIRQLNA 84 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 ++R DK TNVLSFP + D L LGDIV AYE + EA LG EF +HL HL +H Sbjct: 85 KWRDKDKATNVLSFPGSDPQGDVYGPL-LGDIVFAYETVAAEAADLGIEFSDHLTHLTVH 143 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 G LHL YDH + ++A +ME LE++IL LGI+DPY Sbjct: 144 GLLHLFDYDHQESEEAELMESLEKAILASLGIDDPYAD 181 >gi|294676667|ref|YP_003577282.1| hypothetical protein RCAP_rcc01117 [Rhodobacter capsulatus SB 1003] gi|294475487|gb|ADE84875.1| protein of unknown function UPF0054 [Rhodobacter capsulatus SB 1003] Length = 170 Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats. Identities = 62/171 (36%), Positives = 86/171 (50%), Gaps = 19/171 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + +E A W I L L E V+ ++ + E+SL+ D RI LN Sbjct: 6 VDCLIEEAAWQG-IDLAGLSER-----VARIVLTDQELDPEAWEISLIGCDDARIADLNA 59 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLML-------------GDIVLAYEIIEIEANVLG 119 E+RG PTNVLS+P +++ GDI ++Y+ EA G Sbjct: 60 EFRGKPTPTNVLSWPAQDLAAEDDGEEPYFPEPFVPGERDSLGDIAISYQTCLREAEAAG 119 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 K +H+ HL+IHG LHLLGYDH+ D DA +ME +E IL LGI +PYE+ Sbjct: 120 KSVHDHVTHLVIHGVLHLLGYDHIRDADAQLMESIEVRILAALGIANPYEI 170 >gi|212712960|ref|ZP_03321088.1| hypothetical protein PROVALCAL_04058 [Providencia alcalifaciens DSM 30120] gi|212684438|gb|EEB43966.1| hypothetical protein PROVALCAL_04058 [Providencia alcalifaciens DSM 30120] Length = 155 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 64/166 (38%), Positives = 92/166 (55%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQIA EN L T E +F + V+ ++ K + E+++ D Sbjct: 1 MSDVILDLQIASENTA-----GLPT--EAMFQRWVNAVLPKF----QAESEVTIRVVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + +LGD+++ +++E EA K E H Sbjct: 50 ESHELNLTYRGKDKPTNVLSFPFE--APPEVELPLLGDLIICRQVVEQEAAEQQKSEEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A MEGLE IL ++G DPY + Sbjct: 108 WAHMVVHGCLHLLGYDHIEDDEAEEMEGLETEILAEMGYADPYLAE 153 >gi|254361290|ref|ZP_04977433.1| possible metal-dependent hydrolase [Mannheimia haemolytica PHL213] gi|261493920|ref|ZP_05990429.1| putative metal-dependent hydrolase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496864|ref|ZP_05993233.1| putative metal-dependent hydrolase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092786|gb|EDN73829.1| possible metal-dependent hydrolase [Mannheimia haemolytica PHL213] gi|261307481|gb|EEY08815.1| putative metal-dependent hydrolase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310423|gb|EEY11617.1| putative metal-dependent hydrolase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 160 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 87/166 (52%), Gaps = 8/166 (4%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + +DLQIA EN + + KA++ F E+++ D Sbjct: 1 MENLYIDLQIACENT---ENLPSEQQFYTWVQKALAVEAKTDDF---PESEITIRIVDEA 54 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + +G +LGD+V+ +++E EA G E+H Sbjct: 55 ESHELNLTYRGKDKPTNVLSFPFE--APEGIEMPLLGDLVICRQVMEKEAEEQGISAESH 112 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL IHG LHLLGYDH+++ +A ME LE I++ LG DPY + Sbjct: 113 WAHLAIHGTLHLLGYDHIEEDEAVEMESLETEIMQSLGYEDPYLSE 158 >gi|290476184|ref|YP_003469084.1| putative metal-dependent hydrolase [Xenorhabdus bovienii SS-2004] gi|289175517|emb|CBJ82320.1| putative metal-dependent hydrolase [Xenorhabdus bovienii SS-2004] Length = 155 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 +N LDLQIA EN L E +F + + +++ + + E+++ D Sbjct: 1 MNSVILDLQIACENPE-----GLPD--EALFQRWLESILPQF----QAESEVTIRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + +LGD+++ +++E EA K E H Sbjct: 50 ESHDLNLTYRGKDKPTNVLSFPFE--APPEVELPLLGDLIICRQVVEQEAEEQQKTVEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH++D +A ME LE IL+ +G DPY + Sbjct: 108 WAHMVIHGSLHLLGYDHIEDDEAEEMESLETEILQKMGYADPYLAE 153 >gi|271499715|ref|YP_003332740.1| hypothetical protein Dd586_1151 [Dickeya dadantii Ech586] gi|270343270|gb|ACZ76035.1| protein of unknown function UPF0054 [Dickeya dadantii Ech586] Length = 161 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 87/167 (52%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQIA EN+ E + E V ++ E+++ D Sbjct: 1 MSQVILDLQIASENSHGLPSEADFQRWLEAVL------------PQFQDEAEVTIRVVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP + +LGD+++ +++E EA GK E Sbjct: 49 EESHHLNLTYRGKDKPTNVLSFPFE--APPEVELPLLGDLIICRQVVEQEAVEQGKSEEE 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDSEAEEMEALETEIMQSMGYADPYLAE 153 >gi|85058787|ref|YP_454489.1| hypothetical protein SG0809 [Sodalis glossinidius str. 'morsitans'] gi|123519813|sp|Q2NUU1|RRMF_SODGM RecName: Full=Probable rRNA maturation factor gi|84779307|dbj|BAE74084.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 156 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 89/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A + A L E F + + ++ + + E+++ D Sbjct: 1 MSDVILDLQLACDEAR-----GLP--AEADFLRWLQGVLP----LFRDCAEVTVRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG D+PTNVLSFP + +LGD+V+ ++++E EA K E H Sbjct: 50 ESHELNMTYRGKDRPTNVLSFPFE--APPEVELPLLGDLVICHQVVEREAQQQEKALEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH+ D++A ME LE I++ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIQDEEALEMESLETEIMQKLGYPDPYLAE 153 >gi|88798162|ref|ZP_01113748.1| hypothetical protein MED297_12927 [Reinekea sp. MED297] gi|88778938|gb|EAR10127.1| hypothetical protein MED297_12927 [Reinekea sp. MED297] Length = 163 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 60/168 (35%), Positives = 84/168 (50%), Gaps = 14/168 (8%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + LDLQIA + E R + + VE+S+ + Sbjct: 1 MTELTLDLQIATDAENIPAEASFRQWVSAALS------------GYDREVEMSIRVVSAE 48 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + LN YRG DKPTNVLSFP +D +LGD+V+ ++E EA K Sbjct: 49 ESQDLNATYRGKDKPTNVLSFPFEAPPGVADAGIDRLLGDLVICAPVVEEEAQAQRKHLS 108 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +H H+++HG LHLLGYDH++D +A ME ER+IL L I DPY+ + Sbjct: 109 HHWAHMVVHGTLHLLGYDHIEDDEAEQMEQAERTILAALSIPDPYQGE 156 >gi|240849890|ref|YP_002971278.1| hypothetical protein Bgr_02340 [Bartonella grahamii as4aup] gi|240267013|gb|ACS50601.1| hypothetical protein Bgr_02340 [Bartonella grahamii as4aup] Length = 163 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 89/159 (55%), Gaps = 5/159 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + I V++ W DE L + E + ++ E+SL+FTD + Sbjct: 1 MIIIDIMVKSGGWNDEKMLYNITEKALMTTMHHVSLANVVS-----EISLLFTDDKHMAQ 55 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N ++R +K TNVLSFP + MLGDI++A E + +EA GK F++HL H+ Sbjct: 56 INAQWRNKNKSTNVLSFPAFPLKAGNPPGPMLGDIIIARETVVLEAEKQGKTFQDHLTHM 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 I+HG LHLLGYDH D +A ME LER IL+ L I DPY Sbjct: 116 IVHGILHLLGYDHETDNEAYQMEKLEREILQKLSIKDPY 154 >gi|21231768|ref|NP_637685.1| putative metalloprotease [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768106|ref|YP_242868.1| putative metalloprotease [Xanthomonas campestris pv. campestris str. 8004] gi|188991236|ref|YP_001903246.1| putative metalloprotease [Xanthomonas campestris pv. campestris str. B100] gi|26006927|sp|Q8P8B2|RRMF_XANCP RecName: Full=Probable rRNA maturation factor gi|81305917|sp|Q4UVS5|RRMF_XANC8 RecName: Full=Probable rRNA maturation factor gi|229554360|sp|B0RRV9|RRMF_XANCB RecName: Full=Probable rRNA maturation factor gi|21113476|gb|AAM41609.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573438|gb|AAY48848.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] gi|167732996|emb|CAP51194.1| Conserved hypothetical protein [Xanthomonas campestris pv. campestris] Length = 161 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 56/138 (40%), Positives = 73/138 (52%), Gaps = 6/138 (4%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--S 93 F K V+ + +L++ D +LN YRG D TNVLSFP Sbjct: 27 FRKWVAAALKGRI----READLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAEMPQGLP 82 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 G +LGD+V+ ++ EA GK H HL +HG LHLLG+DH DDK+A ME Sbjct: 83 KGVKMPLLGDLVICAPVVAREAAEQGKSLSAHYAHLTVHGTLHLLGWDHEDDKEADAMEQ 142 Query: 154 LERSILEDLGINDPYEVD 171 LER IL +LGI+DPY + Sbjct: 143 LEREILAELGIDDPYAGE 160 >gi|110681055|ref|YP_684062.1| hypothetical protein RD1_3919 [Roseobacter denitrificans OCh 114] gi|122972520|sp|Q161G7|RRMF_ROSDO RecName: Full=Probable rRNA maturation factor gi|109457171|gb|ABG33376.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 166 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 65/172 (37%), Positives = 88/172 (51%), Gaps = 18/172 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+ I +E+ W + L L V IS + E+S + D RI L Sbjct: 1 MDIDILIEDDRWA-AMDLDVLVRDVLRA-----ISDTLTLDLAAAEVSYLACDDARIALL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------------DGCSSLMLGDIVLAYEIIEIEANVL 118 N ++R TNVLS+P A + D +L LGD+ +AYE E EA L Sbjct: 55 NADFREKATATNVLSWPAADLAPVVAGAVPTTPTVDVTGALTLGDVAIAYETCEREAADL 114 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 GK H+ HLI+HG LHLLGYDH+ D DA +M+G+E IL +G +DPY V Sbjct: 115 GKPLAEHVTHLIVHGTLHLLGYDHIRDSDAALMQGVEAKILGKMGFDDPYMV 166 >gi|283834042|ref|ZP_06353783.1| putative metalloprotease YbeY [Citrobacter youngae ATCC 29220] gi|291070183|gb|EFE08292.1| putative metalloprotease YbeY [Citrobacter youngae ATCC 29220] Length = 157 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E+ + + + + + E+++ D Sbjct: 1 MSQVILDLQLACEDE---SGLPTESQFQGWLDAVIPQF--------QEESEVTIRLVDDA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DK TNVLSFP + G +LGD+++ +++E EA GK E H Sbjct: 50 ESHELNLTYRGKDKSTNVLSFPFE--APPGIEMPLLGDLIICRQVVEKEAQEQGKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMLALGYEDPYIAE 153 >gi|71280897|ref|YP_270242.1| hypothetical protein CPS_3574 [Colwellia psychrerythraea 34H] gi|123631588|sp|Q47Y78|RRMF_COLP3 RecName: Full=Probable rRNA maturation factor gi|71146637|gb|AAZ27110.1| conserved hypothetical protein TIGR00043 [Colwellia psychrerythraea 34H] Length = 155 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 10/158 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQ+A ++ + ++ A++ + S EL++ ++ + L Sbjct: 5 IDLQVAC----TPTKLPTKEQFQLWVDTALAEVSSS----PNQDFELTIRLVNNEESQQL 56 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YR DKPTNVLSFP DG +LGD+++ E+++ EA K H HL+ Sbjct: 57 NKQYRDKDKPTNVLSFPFEV--PDGIELNLLGDLIICIEVMKQEAQEQNKALFEHWAHLV 114 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHG LHL+G+DH+ D +A ME +E +ILE LGI++PY Sbjct: 115 IHGCLHLVGFDHISDTEALEMESIEITILEKLGISNPY 152 >gi|163867520|ref|YP_001608719.1| hypothetical protein Btr_0248 [Bartonella tribocorum CIP 105476] gi|189039700|sp|A9IMW1|RRMF_BART1 RecName: Full=Probable rRNA maturation factor gi|161017166|emb|CAK00724.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 163 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 66/159 (41%), Positives = 95/159 (59%), Gaps = 5/159 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + I V++A W DE L + E A+ ++ ++ + E+SL+FTD + Sbjct: 1 MIIIDIMVKDAGWNDEKMLYNITEKALTTAMHHV-----SLENVVSEISLLFTDDEHMAK 55 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N ++RG +K TNVLSFP + MLGDI++A E + +EA GK F++HL H+ Sbjct: 56 INAQWRGKNKSTNVLSFPAFPIKAGNPPGPMLGDIIIARETVVLEAEKQGKTFQDHLTHM 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 I+HG LHLLGYDH D +A ME LER IL+ L I DPY Sbjct: 116 IVHGILHLLGYDHETDDEAHQMEKLEREILQKLSIKDPY 154 >gi|254427071|ref|ZP_05040778.1| conserved hypothetical protein TIGR00043, putative [Alcanivorax sp. DG881] gi|196193240|gb|EDX88199.1| conserved hypothetical protein TIGR00043, putative [Alcanivorax sp. DG881] Length = 175 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 60/168 (35%), Positives = 82/168 (48%), Gaps = 13/168 (7%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 + + P +D+Q A + DE HL A + +++L Sbjct: 1 MNGIPTPTVDIQWASDAPDAPDEPHLCEWVRHAAIAAGGVV-----------GDITLRIV 49 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGK 120 D I TLN +YR D TNVLSFP +G +LGDI++ ++ EA+ K Sbjct: 50 DEDEIRTLNRDYRDKDATTNVLSFPFDMPEGLPEGAVEPLLGDIIICDAVVCREASEQHK 109 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 + H H++ HG LHLLGYDH+DD DA VME LE L +LG DPY Sbjct: 110 PLDAHWAHMVTHGVLHLLGYDHIDDDDALVMETLEIRALGELGFPDPY 157 >gi|329847362|ref|ZP_08262390.1| uncharacterized protein family UPF0054 family protein [Asticcacaulis biprosthecum C19] gi|328842425|gb|EGF91994.1| uncharacterized protein family UPF0054 family protein [Asticcacaulis biprosthecum C19] Length = 160 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 83/159 (52%), Gaps = 7/159 (4%) Query: 13 LQIAVENALWGDEI-HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 + I +E W D + + E A+ + + ++ ++ D ++ LN Sbjct: 5 IDIEIEEDGWLDALPDAVDVVETAVTAALKAVN------FTDQADVVVLLCDDAEMKRLN 58 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 EYR DK TNVLSFP + LGD+ L + EA GK +NH++HL + Sbjct: 59 AEYRNKDKATNVLSFPAPKSMQIKGVLDHLGDMALGLQTCVREAREQGKTLKNHVLHLSV 118 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HG LHLLGYDH+ D +A ME LERSIL++LG+ DPY Sbjct: 119 HGTLHLLGYDHLHDAEAETMENLERSILKNLGVADPYAD 157 >gi|220935458|ref|YP_002514357.1| metal-dependent hydrolase [Thioalkalivibrio sp. HL-EbGR7] gi|219996768|gb|ACL73370.1| metal-dependent hydrolase [Thioalkalivibrio sp. HL-EbGR7] Length = 149 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 74/158 (46%), Gaps = 14/158 (8%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++Q+A E A E L + E+ + + D LN Sbjct: 6 EIQLASEAADIPVEASLERWAAAAWQ------------GDEDEASVVIRVVDEAESAELN 53 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR PTNVLSFP + + LGD+V+ ++ EA GK E H H++I Sbjct: 54 GTYRHKQGPTNVLSFPFE--APPEFAEGHLGDLVICAPVVLREAAEQGKTAEAHWAHMVI 111 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HG LHL G+DH++D +A ME LE+ IL LG +PYE Sbjct: 112 HGMLHLQGHDHIEDAEAARMEALEKEILSGLGYENPYE 149 >gi|152969255|ref|YP_001334364.1| putative metalloprotease [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580847|ref|YP_002239693.1| conserved hypothetical protein TIGR00043 [Klebsiella pneumoniae 342] gi|238893719|ref|YP_002918453.1| putative metalloprotease [Klebsiella pneumoniae NTUH-K2044] gi|262041256|ref|ZP_06014467.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288936535|ref|YP_003440594.1| hypothetical protein Kvar_3682 [Klebsiella variicola At-22] gi|290510409|ref|ZP_06549779.1| metalloprotease [Klebsiella sp. 1_1_55] gi|330005962|ref|ZP_08305446.1| translation metalloprotein YbeY [Klebsiella sp. MS 92-3] gi|167016753|sp|A6T6B3|RRMF_KLEP7 RecName: Full=Probable rRNA maturation factor gi|226701661|sp|B5XZQ2|RRMF_KLEP3 RecName: Full=Probable rRNA maturation factor gi|150954104|gb|ABR76134.1| hypothetical protein KPN_00684 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569905|gb|ACI11681.1| conserved hypothetical protein TIGR00043 [Klebsiella pneumoniae 342] gi|238546035|dbj|BAH62386.1| hypothetical protein KP1_1641 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041372|gb|EEW42432.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288891244|gb|ADC59562.1| protein of unknown function UPF0054 [Klebsiella variicola At-22] gi|289777125|gb|EFD85123.1| metalloprotease [Klebsiella sp. 1_1_55] gi|328536034|gb|EGF62440.1| translation metalloprotein YbeY [Klebsiella sp. MS 92-3] Length = 157 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 64/166 (38%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E L E +F + V +I + EL++ D Sbjct: 1 MSQVILDLQLACEETS-----GLPD--EALFQRWVDAVIPPF----QEESELTIRLVDVA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA+ GK E H Sbjct: 50 ESHELNLTYRGKDKPTNVLSFPFE--APPGIEMPLLGDLIICRQVVEQEASEQGKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A MEGLE I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMEGLETEIMLALGYEDPYISE 153 >gi|58582392|ref|YP_201408.1| putative metalloprotease [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624266|ref|YP_451638.1| putative metalloprotease [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|62901406|sp|Q5GZ48|RRMF_XANOR RecName: Full=Probable rRNA maturation factor gi|123521734|sp|Q2P263|RRMF_XANOM RecName: Full=Probable rRNA maturation factor gi|58426986|gb|AAW76023.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368206|dbj|BAE69364.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 161 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 62/168 (36%), Positives = 81/168 (48%), Gaps = 10/168 (5%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + + L +AV AL + A A+ I +L++ D Sbjct: 1 MTKGPIRLDVAVSYALPRAGLPSAVSFRKWVAAALKGRIR--------EADLAVRLVDEK 52 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 +LN YRG D TNVLSFP G +LGD+V+ ++ EA GK Sbjct: 53 EGCSLNHHYRGKDYATNVLSFPAELPEGLPKGIKMPLLGDLVICAPVVAREAAEQGKSLA 112 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H HL +HG LHLLG+DH DDK+A ME LER IL DLGI+DPY + Sbjct: 113 AHYAHLTVHGTLHLLGWDHDDDKEADAMEQLEREILADLGIDDPYAGE 160 >gi|88860581|ref|ZP_01135219.1| hypothetical protein PTD2_16192 [Pseudoalteromonas tunicata D2] gi|88817779|gb|EAR27596.1| hypothetical protein PTD2_16192 [Pseudoalteromonas tunicata D2] Length = 152 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQIA E + + + EL++ D Sbjct: 1 MTELDLQIASEFKDLPSFEQFQLWAHSTLD------------LFKEESELTIRIADEAES 48 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 + LN +YRG +KPTNVLSFP + G ++GD+++ +++ EA K F +H Sbjct: 49 QQLNNDYRGKNKPTNVLSFPFE--APPGIELPLVGDLIICPQVVYQEALEQEKSFHDHFA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLG+DH++ +DA ME E+ IL LGI+DPY D Sbjct: 107 HMVVHGCLHLLGFDHIEAEDAEEMESNEKEILAKLGISDPYRDD 150 >gi|159184274|ref|NP_353390.2| hypothetical protein Atu0358 [Agrobacterium tumefaciens str. C58] gi|26006905|sp|Q8UID9|RRMF_AGRT5 RecName: Full=Probable rRNA maturation factor gi|159139601|gb|AAK86175.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 168 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 78/162 (48%), Positives = 97/162 (59%), Gaps = 1/162 (0%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKG-YFVKENIVELSLVFTDSHR 66 + LD+QI+VE W E +L V AV L + + VELSLVFTD Sbjct: 1 MAALDIQISVEAEGWSSEENLAAFATKVLNAAVDFLKREEEQPFPKMPVELSLVFTDDEN 60 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I +N E+R DK TNVLSFP G MLGDIV+A E +E EA L K FE+HL Sbjct: 61 IREINAEWRDKDKATNVLSFPAFPLEPGGMPGPMLGDIVIARETVEREALELDKSFEDHL 120 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL++HGFLHL GYDH+D+++A ME LE IL LG++DPY Sbjct: 121 THLLVHGFLHLFGYDHMDEEEAEEMESLETRILAVLGLSDPY 162 >gi|77163774|ref|YP_342299.1| hypothetical protein Noc_0239 [Nitrosococcus oceani ATCC 19707] gi|123595149|sp|Q3JEH7|RRMF_NITOC RecName: Full=Probable rRNA maturation factor gi|76882088|gb|ABA56769.1| Protein of unknown function UPF0054 [Nitrosococcus oceani ATCC 19707] Length = 153 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 8/159 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + ++ A+ + L+ A+ N + E+++ L Sbjct: 1 MSITVHIQYAVPKASVPLQADFLRWVKAALVN--------QSKAGEITIRVASESEAAQL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N+ YR + TN+LSFP S +LGD+V+ ++ EA K+ + H HL+ Sbjct: 53 NWRYRHKEGATNILSFPFEVPSCVSLDVPLLGDLVICAPVVAREALEQTKKEQAHWAHLV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLG+DH + +A ME LE +ILE LG DPYE Sbjct: 113 VHGVLHLLGFDHQQEVEAQQMESLEVTILESLGYPDPYE 151 >gi|52425735|ref|YP_088872.1| putative metalloprotease [Mannheimia succiniciproducens MBEL55E] gi|59799096|sp|Q65RX3|RRMF_MANSM RecName: Full=Probable rRNA maturation factor gi|52307787|gb|AAU38287.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 156 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 63/166 (37%), Positives = 89/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + +DLQIA E+ +L TL + F +N + +F E+++ D Sbjct: 2 MKTVTIDLQIASEDQS-----NLPTLEQ--FTLWATNAVRAEHF----EPEITIRIVDEA 50 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LNF YRG D+PTNVLSFP + +LGD+V+ +++E EA GK H Sbjct: 51 ESHELNFTYRGKDRPTNVLSFPFE--CPEEVELPLLGDLVICRQVVEREAQEQGKPLTAH 108 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG DPY D Sbjct: 109 WAHMVVHGSLHLLGYDHIEDDEAVEMESLETEIMTGLGFEDPYSYD 154 >gi|251790530|ref|YP_003005251.1| putative metalloprotease [Dickeya zeae Ech1591] gi|247539151|gb|ACT07772.1| protein of unknown function UPF0054 [Dickeya zeae Ech1591] Length = 161 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 91/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQIA E + + L + E F + + ++ + V E+++ D Sbjct: 1 MSQVILDLQIASEQS-----LGLPS--EADFQRWLEAVLPQFQEV----AEVTIRVVDEE 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + +LGD+++ +++E EA GK E H Sbjct: 50 ESHHLNLTYRGKDKPTNVLSFPFE--APPEVELPLLGDLIICRQVVEQEAVEQGKSTEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDSEAEEMEALETEIMQSMGYADPYLAE 153 >gi|242238552|ref|YP_002986733.1| metalloprotease [Dickeya dadantii Ech703] gi|242130609|gb|ACS84911.1| protein of unknown function UPF0054 [Dickeya dadantii Ech703] Length = 161 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 88/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQIA N D + E F + + ++ + V E+++ D Sbjct: 1 MSQVILDLQIACAN---QDGLP----AESTFQRWLEAVLPQFQEV----AEVTVRLVDEE 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + +LGD+++ +++E EA K E H Sbjct: 50 ESHHLNLTYRGKDKPTNVLSFPFE--APPEVELPLLGDLIICRQVVEQEAAEQEKTTEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 108 WAHMVVHGCLHLLGYDHIEDSEAEEMEALETEIMQGMGYADPYLSE 153 >gi|119470864|ref|ZP_01613475.1| hypothetical protein ATW7_05976 [Alteromonadales bacterium TW-7] gi|119446091|gb|EAW27370.1| hypothetical protein ATW7_05976 [Alteromonadales bacterium TW-7] Length = 152 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 58/162 (35%), Positives = 86/162 (53%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA E E + ++ + EL++V +D + + Sbjct: 4 ELDLQIACEFDNLPSEAQFALWADKALSQ------------YRDESELTIVISDEAQSQQ 51 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG +KPTNVLSF F + G ++GD+V+ I+ EA K F +H H+ Sbjct: 52 LNNDYRGKNKPTNVLSF--EFEAPPGIELPLVGDLVICPAIVLAEAVEQEKSFHDHFAHM 109 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLG+DH+ +DA ME +E+ +L +L I DPY + Sbjct: 110 VIHGCLHLLGFDHIKSEDALQMESIEKQLLAELNIADPYRDE 151 >gi|183598129|ref|ZP_02959622.1| hypothetical protein PROSTU_01494 [Providencia stuartii ATCC 25827] gi|188020288|gb|EDU58328.1| hypothetical protein PROSTU_01494 [Providencia stuartii ATCC 25827] Length = 155 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 87/166 (52%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E L E +F + + ++ K E+++ D Sbjct: 1 MSEVILDLQLACEET-----TGLPD--EALFQRWLEAVLPKFQPQS----EVTIRIVDEE 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + +LGD+++ +++E EA K E H Sbjct: 50 ESHHLNLTYRGKDKPTNVLSFPFE--APPEVELPLLGDLIICRQVVEQEAIEQQKSAEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE IL +LG DPY + Sbjct: 108 WAHMVVHGCLHLLGYDHIEDDEAEEMESLETEILAELGYADPYLAE 153 >gi|49473879|ref|YP_031921.1| hypothetical protein BQ02120 [Bartonella quintana str. Toulouse] gi|59799034|sp|Q6G0N3|RRMF_BARQU RecName: Full=Probable rRNA maturation factor gi|49239382|emb|CAF25715.1| hypothetical protein BQ02120 [Bartonella quintana str. Toulouse] Length = 158 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 66/159 (41%), Positives = 96/159 (60%), Gaps = 5/159 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + I VE+A W +E L + E +++L ++ + E+SL+FTD + Sbjct: 1 MITIDITVESARWNNEKMLYDITEKALKTTMNHL-----SLENVVSEISLLFTDDKHMAQ 55 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N ++R +K TNVLSFP + LMLGDI++A E + +EA GK F++HL H+ Sbjct: 56 INAQWRNKNKSTNVLSFPALPLKAGDPPGLMLGDIIIAQETVVLEAKKEGKSFQDHLTHM 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 I+HG LHLLGY+H + +AC ME LER IL L INDPY Sbjct: 116 IVHGILHLLGYNHETNDEACQMEELEREILLKLSINDPY 154 >gi|258544939|ref|ZP_05705173.1| metalloprotease [Cardiobacterium hominis ATCC 15826] gi|258519859|gb|EEV88718.1| metalloprotease [Cardiobacterium hominis ATCC 15826] Length = 161 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 81/158 (51%), Gaps = 8/158 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L + E + + A + E +EL++ D+ ++ L Sbjct: 3 LTIDYQTEELGNDERFPSEKRLQRWLETA------RATLAIEEALELTIRLVDNDEMQEL 56 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N EYRG D PTNVLSFP + + +LGD+V+A ++ EA K E H H++ Sbjct: 57 NREYRGKDYPTNVLSFPCDWDLPE--EPRLLGDVVIAAAVVNREAKEQKKTMEAHWAHIV 114 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHGFLHLLGYDH++D DA ME ER+IL LG DPY Sbjct: 115 IHGFLHLLGYDHIEDADAEKMENTERNILAQLGYADPY 152 >gi|285018848|ref|YP_003376559.1| hypothetical protein XALc_2084 [Xanthomonas albilineans GPE PC73] gi|283474066|emb|CBA16567.1| hypothetical protein XALc_2084 [Xanthomonas albilineans] Length = 161 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 55/140 (39%), Positives = 72/140 (51%), Gaps = 6/140 (4%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS- 92 F K V+ + +L++ D LN YRG D TNVLSFP Sbjct: 25 TSFRKWVAVALKGRI----READLAIRLVDQREGRALNQHYRGKDYATNVLSFPAELPDG 80 Query: 93 -SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 G +LGD+V+ ++ EA GK H HL +HG LHLLG+DH DDK+A M Sbjct: 81 LPKGIRLPLLGDLVICAPVVAREAAEQGKPLNAHYAHLTVHGVLHLLGWDHEDDKEAEAM 140 Query: 152 EGLERSILEDLGINDPYEVD 171 E LER IL +LG++DPY + Sbjct: 141 EQLERQILGELGLSDPYAGE 160 >gi|325291792|ref|YP_004277656.1| hypothetical protein AGROH133_03547 [Agrobacterium sp. H13-3] gi|325059645|gb|ADY63336.1| hypothetical protein AGROH133_03547 [Agrobacterium sp. H13-3] Length = 168 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 77/162 (47%), Positives = 95/162 (58%), Gaps = 1/162 (0%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKG-YFVKENIVELSLVFTDSHR 66 + LD+QI+VE W E L AV L + + VELSLVFTD Sbjct: 1 MTALDIQISVEAEGWSSEEDLLAFATKALDAAVDFLKREENQPFPKMPVELSLVFTDDEN 60 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I +N E+R DK TNVLSFP G MLGDIV+A E +E EA L K FE+HL Sbjct: 61 IREINAEWRDKDKATNVLSFPAFPLEPGGMPGPMLGDIVIARETVEREALELEKSFEDHL 120 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL++HGFLHL GYDH+D+++A ME LE IL LG++DPY Sbjct: 121 THLLVHGFLHLFGYDHMDEEEAEEMESLETRILAVLGLSDPY 162 >gi|307130058|ref|YP_003882074.1| hypothetical protein Dda3937_02469 [Dickeya dadantii 3937] gi|306527587|gb|ADM97517.1| conserved protein [Dickeya dadantii 3937] Length = 161 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 85/167 (50%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQIA EN E + E V + + E+++ D Sbjct: 1 MSQVILDLQIASENNSGLPSEADFQRWLEAVL------------PQFQEVAEVTIRVVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YR DKPTNVLSFP + +LGD+++ +++E EA GK E Sbjct: 49 EESHHLNLTYRCKDKPTNVLSFPFE--APPEVELPLLGDLIICRQVVEQEAVEQGKSAEE 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDSEAEEMEALETEIMQSMGYADPYLAE 153 >gi|71909141|ref|YP_286728.1| hypothetical protein Daro_3529 [Dechloromonas aromatica RCB] gi|123626555|sp|Q47A73|RRMF_DECAR RecName: Full=Probable rRNA maturation factor gi|71848762|gb|AAZ48258.1| Protein of unknown function UPF0054 [Dechloromonas aromatica RCB] Length = 149 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 71/170 (41%), Gaps = 21/170 (12%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M N L +Q A E+++ Sbjct: 1 MKNAPSNRLNLSVQYACNREGLPLRADFVRWARAALV---------------GGGEVTIR 45 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 D+ ++LN EYRG D TNVLSFP +++GD+V+ ++ EA K Sbjct: 46 LVDADEGQSLNKEYRGKDYATNVLSFPYD------TEPVVMGDLVVCPSVVSKEAAEQNK 99 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 E H HL +HG LHL G+DH +D DA ME ER IL +G DPY V Sbjct: 100 PLEAHYAHLTVHGMLHLQGWDHDNDDDAQAMEDEEREILAAMGYPDPYAV 149 >gi|37197841|dbj|BAC93679.1| predicted metal-dependent hydrolase [Vibrio vulnificus YJ016] Length = 250 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 59/168 (35%), Positives = 87/168 (51%), Gaps = 13/168 (7%) Query: 4 KKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTD 63 K LDLQ+AVE+ + + + K + + E+++ D Sbjct: 94 KPHMAIELDLQLAVED---QNGLPSAQDFQTWLDKTIPPFQPQ--------AEVTIRIVD 142 Query: 64 SHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 S LN +YRG DKPTNVLSFP + G +LGD+V+ +++E EA K Sbjct: 143 SQESHQLNHDYRGKDKPTNVLSFPFE--APPGMEMDLLGDLVICRQVVEQEAIEQDKPLM 200 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 201 AHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGFTDPYLAE 248 >gi|288959690|ref|YP_003450031.1| metal-dependent hydrolase [Azospirillum sp. B510] gi|288911998|dbj|BAI73487.1| metal-dependent hydrolase [Azospirillum sp. B510] Length = 168 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 84/160 (52%), Gaps = 9/160 (5%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 D+ ++ E W + ++ Y +E ELS+V D + LN Sbjct: 6 DITVSREAGDWAGDAEWLAERAA------LAALAATYDDEEGPAELSVVLADDALVHQLN 59 Query: 72 FEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +YRG DKPTNVLSF + +MLGD++LA+E + EA+ GK E+HL H Sbjct: 60 RDYRGKDKPTNVLSFALTEAEEPEPEEGMPVMLGDVILAFETVVREASEQGKSLEDHLTH 119 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 L++HG LHLLGYDH D +A ME LE +L GI DPY Sbjct: 120 LVMHGVLHLLGYDHETDDEAEEMEALETRLLASFGIADPY 159 >gi|166711740|ref|ZP_02242947.1| hypothetical protein Xoryp_09845 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 161 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 62/168 (36%), Positives = 82/168 (48%), Gaps = 10/168 (5%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + + L +AV AL + A A+ I +L++ D Sbjct: 1 MTKGPIRLDVAVSYALPRAGLPSAVSFRKWVAAALKGRIR--------EADLAVRVVDEK 52 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 +LN+ YRG D TNVLSFP G +LGD+V+ ++ EA GK Sbjct: 53 EGCSLNYHYRGKDYATNVLSFPAELPEGLPKGIKMPLLGDLVICAPVVAREAAEQGKSLA 112 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H HL +HG LHLLG+DH DDK+A ME LER IL DLGI+DPY + Sbjct: 113 AHYAHLTVHGTLHLLGWDHDDDKEADAMEQLEREILADLGIDDPYAGE 160 >gi|37525277|ref|NP_928621.1| putative metalloprotease [Photorhabdus luminescens subsp. laumondii TTO1] gi|46577360|sp|Q7N748|RRMF_PHOLL RecName: Full=Probable rRNA maturation factor gi|36784704|emb|CAE13604.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 155 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQIA E++ + E +F + ++ + ++ E+++ D Sbjct: 1 MSSVILDLQIACEHSQGLPK-------ETLFQHWLDGVLPQF----QSESEVTIRIVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG +KPTNVLSFP + +LGD+++ +++E EA K E H Sbjct: 50 ESHDLNLTYRGKNKPTNVLSFPFE--APPEIDLPLLGDLIICRQVVEKEAEEQQKTIEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I++ LG DPY + Sbjct: 108 WAHMVVHGCLHLLGYDHIEDDEAEEMESLETEIMQKLGYADPYLAE 153 >gi|325524865|gb|EGD02813.1| putative metalloprotease fusion protein [Burkholderia sp. TJI49] Length = 258 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 77/161 (47%), Gaps = 11/161 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L+L ++V+ DEI + K ++ I F +L++ F T Sbjct: 108 ELELDLSVQYG---DEITSEVRKTLPKRKLIAEWIEPALFAS---AQLTVRFVGEEEGRT 161 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D PTNVL+F A ++GD+VL ++E EA GK H HL Sbjct: 162 LNAGYRHKDYPTNVLTFAYDAAPDG----TVIGDLVLCCPVVEKEAREQGKPLAAHYAHL 217 Query: 130 IIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 ++HG LH GYDH D+DA ME LE IL LG +PY Sbjct: 218 LVHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYR 258 >gi|56550970|ref|YP_161809.1| hypothetical protein ZMO0074 [Zymomonas mobilis subsp. mobilis ZM4] gi|241761440|ref|ZP_04759528.1| protein of unknown function UPF0054 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753355|ref|YP_003226248.1| hypothetical protein Za10_1119 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|59799005|sp|Q5NRF6|RRMF_ZYMMO RecName: Full=Probable rRNA maturation factor gi|56542544|gb|AAV88698.1| protein of unknown function UPF0054 [Zymomonas mobilis subsp. mobilis ZM4] gi|241374347|gb|EER63844.1| protein of unknown function UPF0054 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552718|gb|ACV75664.1| protein of unknown function UPF0054 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 176 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 64/167 (38%), Positives = 92/167 (55%), Gaps = 7/167 (4%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + ++ + + LW ++ + L + +AVS S K+ E+S+ F+D+ + Sbjct: 1 MITVEADI-SDLWPEQSNWEALAQTACQQAVSVSASDFLLAKDYETEISVCFSDNDTVHA 59 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIVLAYEIIEIEANVLGKEFE 123 LN +R D+PTNVLSFP A S +LGDI+LA+++ + EA G E Sbjct: 60 LNKTWRDKDRPTNVLSFPMMEAEELAEIKNRVGSECLLGDIILAFDVAKKEALEKGISLE 119 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 NH+ HLI HG LHLLGYDH+ D +A +ME LER L L I DPY Sbjct: 120 NHVTHLITHGTLHLLGYDHILDNEAEIMEDLERKALAQLDIPDPYSD 166 >gi|325914749|ref|ZP_08177087.1| hypothetical protein TIGR00043 [Xanthomonas vesicatoria ATCC 35937] gi|325539026|gb|EGD10684.1| hypothetical protein TIGR00043 [Xanthomonas vesicatoria ATCC 35937] Length = 161 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 57/138 (41%), Positives = 72/138 (52%), Gaps = 6/138 (4%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--S 93 F K V+ + +L++ D +LN YRG D TNVLSFP Sbjct: 27 FRKWVAAALKGRI----READLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAELPEGLP 82 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 G +LGD+V+ ++ EA GK H HL +HG LHLLG+DH DDK+A ME Sbjct: 83 KGIKMPLLGDLVICAPVVAREAAEQGKSLAAHYAHLTVHGTLHLLGWDHEDDKEADAMEQ 142 Query: 154 LERSILEDLGINDPYEVD 171 LER IL DLGI DPY + Sbjct: 143 LEREILADLGIEDPYAGE 160 >gi|237730636|ref|ZP_04561117.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226906175|gb|EEH92093.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 155 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E+ + + + + + E+++ D Sbjct: 1 MSQVILDLQLACEDE---SGLPTESQFQGWLDAVIPQF--------QEESEVTIRLVDDA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DK TNVLSFP + G +LGD+++ +++E EA GK E H Sbjct: 50 ESHDLNLTYRGKDKSTNVLSFPFE--APPGIEMSLLGDLIICRQVVEKEAQEQGKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMLALGYEDPYIAE 153 >gi|260913090|ref|ZP_05919572.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] gi|260632677|gb|EEX50846.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] Length = 156 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 63/166 (37%), Positives = 88/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + +DLQIA EN + + + +AV +S VE+++ D Sbjct: 1 MKQVIIDLQIATENT---ENLPTEAQIQEWANRAVQPELS--------DVEMTVRIVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LNF YRG DKPTNVLSFP D +LGD+V+ +++E EA GK H Sbjct: 50 ESHDLNFTYRGKDKPTNVLSFPFE--CPDEVELGLLGDLVICRQVVEKEAEEQGKPLMAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I++ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMENLETEIMQSLGFEDPYLSE 153 >gi|268590391|ref|ZP_06124612.1| putative metalloprotease [Providencia rettgeri DSM 1131] gi|291314304|gb|EFE54757.1| putative metalloprotease [Providencia rettgeri DSM 1131] Length = 155 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 63/166 (37%), Positives = 91/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQIA EN L + E F + ++ ++ K + E+++ D Sbjct: 1 MSDIILDLQIACENPN-----GLPSEAE--FQRWLAAVLPKFQALS----EVTIRVVDEQ 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + +LGD+++ +++E EA K E H Sbjct: 50 ESHHLNLTYRGKDKPTNVLSFPFE--APPEIELPLLGDLIICRQVVEQEAIDQQKTAEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A MEGLE IL +LG DPY + Sbjct: 108 WAHMVVHGCLHLLGYDHIEDDEAEEMEGLETEILAELGYEDPYLAE 153 >gi|83648012|ref|YP_436447.1| metal-dependent hydrolase [Hahella chejuensis KCTC 2396] gi|123531265|sp|Q2SBF2|RRMF_HAHCH RecName: Full=Probable rRNA maturation factor gi|83636055|gb|ABC32022.1| predicted metal-dependent hydrolase [Hahella chejuensis KCTC 2396] Length = 156 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 78/157 (49%), Gaps = 15/157 (9%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 D+QIA E A E L + + E+++ D+ LN Sbjct: 6 DIQIASEEADLPSEEQLILWAQAALRET-------------GDREVTIRIVDAEESRELN 52 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +YRG DKPTNVLSFP + G + +LGD+V+ ++ EA K H H++I Sbjct: 53 AQYRGKDKPTNVLSFPFE--NPPGLTLPLLGDLVICAPVVFNEAVEQQKTAAAHWAHMVI 110 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HG LHL GYDH+ D++A VME LE ++ LG PY Sbjct: 111 HGMLHLQGYDHIIDEEAEVMESLETELVTSLGFPPPY 147 >gi|289671363|ref|ZP_06492438.1| putative metalloprotease [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 161 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 57/138 (41%), Positives = 73/138 (52%), Gaps = 6/138 (4%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--S 93 F K V+ + +L++ D +LN YRG D TNVLSFP Sbjct: 27 FRKWVAAALKGRI----READLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAELPKGLP 82 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 G +LGD+V+ ++ EA GK H HL +HG LHLLG+DH DDK+A ME Sbjct: 83 QGIKMPLLGDLVICAPVVAREAAEQGKSLAAHYAHLTVHGTLHLLGWDHEDDKEADAMEQ 142 Query: 154 LERSILEDLGINDPYEVD 171 LER IL DLGI+DPY + Sbjct: 143 LEREILADLGIDDPYAGE 160 >gi|167585514|ref|ZP_02377902.1| hypothetical protein BuboB_09264 [Burkholderia ubonensis Bu] Length = 259 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 56/159 (35%), Positives = 77/159 (48%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L +AV+ DEI K ++ I+ F +L++ F +LN Sbjct: 111 ELDLAVQYG---DEITGDVRKACPKRKLIAEWIAPALFAD---AQLTVRFVGEEEGRSLN 164 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D PTNVL+F A ++GD+VL ++E EA GK + H HL++ Sbjct: 165 DSYRHKDYPTNVLTFAYDEAPDG----TVIGDLVLCCPVVEKEAREQGKPLDAHYAHLLV 220 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH D+DA ME LE IL LG +PY Sbjct: 221 HGVLHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYR 259 >gi|254251465|ref|ZP_04944783.1| hypothetical protein BDAG_00652 [Burkholderia dolosa AUO158] gi|124894074|gb|EAY67954.1| hypothetical protein BDAG_00652 [Burkholderia dolosa AUO158] Length = 270 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 59/162 (36%), Positives = 79/162 (48%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ I F + +L++ F Sbjct: 121 PELDLSV-----QYGDEIAPDVRKTLPKRKLIAEWIEPALF---SSAQLTVRFVGEEEGR 172 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 TLN YR D PTNVL+F A ++GD+VL ++E EA GK + H H Sbjct: 173 TLNAGYRHKDYPTNVLTFAYDPAPDG----TVIGDLVLCCPVVEKEAQEQGKPLDAHYAH 228 Query: 129 LIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH D+DA ME LE IL LG +PY Sbjct: 229 LLVHGVLHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYR 270 >gi|212636646|ref|YP_002313171.1| putative metalloprotease [Shewanella piezotolerans WP3] gi|226706243|sp|B8CSF8|RRMF_SHEPW RecName: Full=Probable rRNA maturation factor gi|212558130|gb|ACJ30584.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 156 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 14/163 (8%) Query: 7 NLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 LDLQ+AVE G E+ E+ A+ + + + EL++ D Sbjct: 6 TSVELDLQVAVE----GVELPSVQEMELWVKTALRDSMDQ--------AELTIRIVDVAE 53 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + LN YRG DKPTNVLSFP + G +LGD+V+ +++ EA K H Sbjct: 54 SQMLNSTYRGKDKPTNVLSFPFE--APPGIELPLLGDLVVCAAVVKQEAIDQNKPLNAHW 111 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 H+++HG LHLLGYDH++D +A ME LE ++E LG N+PY+ Sbjct: 112 AHMVVHGCLHLLGYDHIEDIEAEEMESLETQLIESLGYNNPYQ 154 >gi|296103384|ref|YP_003613530.1| putative metalloprotease [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057843|gb|ADF62581.1| putative metalloprotease [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295096598|emb|CBK85688.1| conserved hypothetical protein TIGR00043 [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 155 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 88/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E+ E E F K + +I + + E+++ D Sbjct: 1 MSQVILDLQLACEDNSGMPE-------EAQFQKWLDAVIPQF----QEESEVTIRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA K E H Sbjct: 50 ESHELNLTYRGKDKPTNVLSFPFE--APPGIEMPLLGDLIICRQVVEQEAKEQQKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMLALGYEDPYIAE 153 >gi|315634775|ref|ZP_07890057.1| metal-dependent hydrolase [Aggregatibacter segnis ATCC 33393] gi|315476327|gb|EFU67077.1| metal-dependent hydrolase [Aggregatibacter segnis ATCC 33393] Length = 154 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 82/166 (49%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + +DLQIA E + E AV + + VE+++ D Sbjct: 1 MGKMIIDLQIACEQE---SGLPTAEQIEQWATAAVQ--------PQSDEVEMTVRIVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG D+PTNVLSFP D +LGD+V+ +++E EA K H Sbjct: 50 ESHELNLNYRGKDRPTNVLSFPFE--CPDEVELPLLGDLVICRQVVEREAQEQDKPVMAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMESLEAQIMTGLGFADPYLSE 153 >gi|289665628|ref|ZP_06487209.1| putative metalloprotease [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 161 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 57/138 (41%), Positives = 73/138 (52%), Gaps = 6/138 (4%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--S 93 F K V+ + +L++ D +LN YRG D TNVLSFP Sbjct: 27 FRKWVAAALKGRI----READLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAKLPEGLP 82 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 G +LGD+V+ ++ EA GK H HL +HG LHLLG+DH DDK+A ME Sbjct: 83 KGIKMPLLGDLVICAPVVAREAAEQGKSLAAHYAHLTVHGTLHLLGWDHEDDKEADAMEQ 142 Query: 154 LERSILEDLGINDPYEVD 171 LER IL DLGI+DPY + Sbjct: 143 LEREILADLGIDDPYAGE 160 >gi|170728027|ref|YP_001762053.1| putative metalloprotease [Shewanella woodyi ATCC 51908] gi|238688644|sp|B1KDV6|RRMF_SHEWM RecName: Full=Probable rRNA maturation factor gi|169813374|gb|ACA87958.1| protein of unknown function UPF0054 [Shewanella woodyi ATCC 51908] Length = 158 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 55/159 (34%), Positives = 82/159 (51%), Gaps = 14/159 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA +N + ++ EL++ D+ + L Sbjct: 12 LDLQIATDNKQLPTQQDFELWVRTALRNTMTE------------AELTVRVVDAEESQAL 59 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP + +LGD+++ ++E EA K + H H++ Sbjct: 60 NSTYRGKDKPTNVLSFPFE--APAEIELPLLGDLIICASVVEHEAIQQNKPLQAHWAHMV 117 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D +A ME +E ++E LG N+PY+ Sbjct: 118 VHGCLHLLGYDHINDIEAEEMESIETQLIESLGFNNPYK 156 >gi|49475036|ref|YP_033077.1| hypothetical protein BH02240 [Bartonella henselae str. Houston-1] gi|59799036|sp|Q6G4V8|RRMF_BARHE RecName: Full=Probable rRNA maturation factor gi|49237841|emb|CAF27036.1| hypothetical protein BH02240 [Bartonella henselae str. Houston-1] Length = 158 Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 92/159 (57%), Gaps = 5/159 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + I VE+ W DE L + E + +L ++ + E+SL+FTD + Sbjct: 1 MITIDILVESDGWNDEKMLYNITEKALKTIMHHL-----SLENVVSEISLLFTDDKHMAQ 55 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N ++RG +K TNVLSFP MLGDI++A E + +EA K F++HL H+ Sbjct: 56 INAQWRGKNKSTNVLSFPAFPLKVGDSPGPMLGDIIIARETVVLEAENEAKSFQDHLTHM 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 I+HG LHLLGY+H +++A ME LER IL+ L I DPY Sbjct: 116 IVHGILHLLGYNHETNEEASHMEELERKILQKLSIKDPY 154 >gi|77359990|ref|YP_339565.1| hypothetical protein PSHAa1044 [Pseudoalteromonas haloplanktis TAC125] gi|123589178|sp|Q3IK77|RRMF_PSEHT RecName: Full=Probable rRNA maturation factor gi|76874901|emb|CAI86122.1| conserved protein of unknown function [Pseudoalteromonas haloplanktis TAC125] Length = 152 Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats. Identities = 58/162 (35%), Positives = 86/162 (53%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA E E + ++ + EL++V +D + + Sbjct: 4 ELDLQIACEFDNLPSEAQFALWADKALSQ------------YRDESELTIVISDEAQSQQ 51 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG +KPTNVLSF F + G ++GD+V+ I+ EA K F +H H+ Sbjct: 52 LNNDYRGKNKPTNVLSF--EFEAPPGIDIPLVGDLVICPAIVLAEAIEQEKSFHDHFAHM 109 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLG+DH+ +DA ME +E+ +L +L I DPY + Sbjct: 110 VIHGCLHLLGFDHIKSEDAFEMESIEKQLLAELNIADPYRDE 151 >gi|134296888|ref|YP_001120623.1| unkown domain/putative metalloprotease fusion protein [Burkholderia vietnamiensis G4] gi|134140045|gb|ABO55788.1| protein of unknown function UPF0054 [Burkholderia vietnamiensis G4] Length = 258 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 76/161 (47%), Gaps = 11/161 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L+ +++V+ DEI + K ++ I F +L++ F T Sbjct: 108 ELEFELSVQYG---DEITAELRKTLPKRKLIAEWIEPALFAS---AQLTVRFVGEEEGRT 161 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D PTNVL+F A ++GD+VL ++E EA K H HL Sbjct: 162 LNAGYRHKDYPTNVLTFAYDPAPDG----TVIGDLVLCCPVVEKEAREQNKPLAAHYAHL 217 Query: 130 IIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 ++HG LH GYDH D DA ME LE IL LG +PY+ Sbjct: 218 LVHGALHAQGYDHETSDADAAEMEALEIDILAKLGFPNPYQ 258 >gi|21243197|ref|NP_642779.1| metalloprotease [Xanthomonas axonopodis pv. citri str. 306] gi|294624980|ref|ZP_06703631.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664274|ref|ZP_06729644.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|26006928|sp|Q8PJR6|RRMF_XANAC RecName: Full=Probable rRNA maturation factor gi|21108723|gb|AAM37315.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] gi|292600702|gb|EFF44788.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605946|gb|EFF49227.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 161 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 57/138 (41%), Positives = 73/138 (52%), Gaps = 6/138 (4%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--S 93 F K V+ + +L++ D +LN YRG D TNVLSFP Sbjct: 27 FRKWVAAALKGRI----READLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAELPEGLP 82 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 G +LGD+V+ ++ EA GK H HL +HG LHLLG+DH DDK+A ME Sbjct: 83 KGIKMPLLGDLVICAPVVAREAAEQGKSLAAHYAHLTVHGTLHLLGWDHEDDKEAEAMEQ 142 Query: 154 LERSILEDLGINDPYEVD 171 LER IL DLGI+DPY + Sbjct: 143 LEREILADLGIDDPYAGE 160 >gi|103487640|ref|YP_617201.1| hypothetical protein Sala_2159 [Sphingopyxis alaskensis RB2256] gi|123078201|sp|Q1GR54|RRMF_SPHAL RecName: Full=Probable rRNA maturation factor gi|98977717|gb|ABF53868.1| protein of unknown function UPF0054 [Sphingopyxis alaskensis RB2256] Length = 168 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 60/155 (38%), Positives = 78/155 (50%), Gaps = 6/155 (3%) Query: 22 WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 W D + A A + +VE+++ TD + TLN ++RG DKPT Sbjct: 12 WPDALDWAARAAEAVAAAFAITPFAALADAAPLVEVAVRLTDDAEVHTLNRDFRGRDKPT 71 Query: 82 NVLSFP------TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 NVLSFP ++ ++LGDIVLA E EA+ G H HLI+HG L Sbjct: 72 NVLSFPQVQNDLLESLANSDDGEILLGDIVLARETCAREADEKGVSLAAHATHLIVHGAL 131 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HL+GYDH+DD A ME LE L LGI +PY Sbjct: 132 HLVGYDHMDDVSAAAMEALEVKALASLGIANPYAD 166 >gi|16759620|ref|NP_455237.1| metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142607|ref|NP_805949.1| metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62179266|ref|YP_215683.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615113|ref|YP_001589078.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168231684|ref|ZP_02656742.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236656|ref|ZP_02661714.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240518|ref|ZP_02665450.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264398|ref|ZP_02686371.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168820206|ref|ZP_02832206.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443004|ref|YP_002039912.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448551|ref|YP_002044703.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470785|ref|ZP_03076769.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734762|ref|YP_002113779.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197251252|ref|YP_002145645.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262278|ref|ZP_03162352.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200390340|ref|ZP_03216951.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930535|ref|ZP_03221465.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|213425076|ref|ZP_03357826.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213608001|ref|ZP_03368827.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647867|ref|ZP_03377920.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|224582503|ref|YP_002636301.1| metalloprotease [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911618|ref|ZP_04655455.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825601|ref|ZP_06544787.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|26006915|sp|Q8Z8G6|RRMF_SALTI RecName: Full=Probable rRNA maturation factor YbeY gi|75484424|sp|Q57RQ9|RRMF_SALCH RecName: Full=Probable rRNA maturation factor YbeY gi|189041075|sp|A9MUI2|RRMF_SALPB RecName: Full=Probable rRNA maturation factor YbeY gi|226704002|sp|B5EZB0|RRMF_SALA4 RecName: Full=Probable rRNA maturation factor YbeY gi|238690245|sp|B4TB72|RRMF_SALHS RecName: Full=Probable rRNA maturation factor YbeY gi|238693560|sp|B4SYM8|RRMF_SALNS RecName: Full=Probable rRNA maturation factor YbeY gi|238693645|sp|B4TPY8|RRMF_SALSV RecName: Full=Probable rRNA maturation factor YbeY gi|254807367|sp|C0PW97|RRMF_SALPC RecName: Full=Probable rRNA maturation factor YbeY gi|25331411|pir||AI0583 conserved hypothetical protein STY0714 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501912|emb|CAD05139.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138238|gb|AAO69809.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62126899|gb|AAX64602.1| putative metal-dependent hydrolase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364477|gb|ABX68245.1| hypothetical protein SPAB_02880 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401667|gb|ACF61889.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406855|gb|ACF67074.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457149|gb|EDX45988.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710264|gb|ACF89485.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197214955|gb|ACH52352.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240533|gb|EDY23153.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290423|gb|EDY29779.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199602785|gb|EDZ01331.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320469|gb|EDZ05672.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205334140|gb|EDZ20904.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340341|gb|EDZ27105.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343173|gb|EDZ29937.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347119|gb|EDZ33750.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224467030|gb|ACN44860.1| hypothetical protein SPC_0685 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320084941|emb|CBY94730.1| putative metalloprotease ybeY [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322613206|gb|EFY10149.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621274|gb|EFY18131.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623694|gb|EFY20532.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628966|gb|EFY25745.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631688|gb|EFY28442.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637576|gb|EFY34278.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641916|gb|EFY38546.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646760|gb|EFY43266.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651461|gb|EFY47841.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653088|gb|EFY49422.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658809|gb|EFY55064.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664922|gb|EFY61115.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668924|gb|EFY65076.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670570|gb|EFY66703.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675311|gb|EFY71387.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682218|gb|EFY78243.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684953|gb|EFY80950.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713732|gb|EFZ05303.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323193989|gb|EFZ79191.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197919|gb|EFZ83041.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202034|gb|EFZ87094.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207167|gb|EFZ92120.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210926|gb|EFZ95789.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214306|gb|EFZ99057.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219289|gb|EGA03780.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225500|gb|EGA09730.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231059|gb|EGA15175.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234109|gb|EGA18198.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238196|gb|EGA22254.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242570|gb|EGA26594.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248453|gb|EGA32387.1| metal-binding heat shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251332|gb|EGA35204.1| metal-binding heat shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323262139|gb|EGA45701.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264849|gb|EGA48350.1| metal-binding heat shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272314|gb|EGA55721.1| metal-binding heat shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 157 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 88/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A EN L E F + + +I + + E+++ D Sbjct: 1 MSQVILDLQLACEN-----HAGLPD--EAQFQRWLDGVIPQF----QEEAEVTIRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA K E H Sbjct: 50 ESHDLNLTYRGKDKPTNVLSFPFE--APPGIEMPLLGDLIICRQVVEQEAQEQSKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH+DD +A ME LE I+ +G DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPYIAE 153 >gi|310766986|gb|ADP11936.1| conserved uncharacterized protein YbeY [Erwinia sp. Ejp617] Length = 155 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 86/166 (51%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + LDLQ+A E L T E F + + ++ + + E+++ D Sbjct: 1 MTQVILDLQLAC-----KSEQGLPT--EADFQRWLEAVLPQF----QPESEVTIRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA K E H Sbjct: 50 ESHQLNHTYRGKDKPTNVLSFPFE--APPGIELPLLGDLIICRQVVEQEAAEQEKVLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH+ D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVIHGSLHLLGYDHIVDDEAEEMESLETEIMLALGYPDPYISE 153 >gi|56414203|ref|YP_151278.1| metalloprotease [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363127|ref|YP_002142764.1| metalloprotease [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|62901210|sp|Q5PLS8|RRMF_SALPA RecName: Full=Probable rRNA maturation factor YbeY gi|238689934|sp|B5BCD3|RRMF_SALPK RecName: Full=Probable rRNA maturation factor YbeY gi|56128460|gb|AAV77966.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094604|emb|CAR60125.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 157 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 88/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A EN L E F + + +I + + E+++ D Sbjct: 1 MSQVILDLQLACEN-----HAGLPD--EAQFQRWLDGVIPQF----QEEAEVTIRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA K E H Sbjct: 50 ESHDLNLTYRGKDKPTNVLSFPFE--APPGIEMPLLGDLIICRQVVEQEAQEQSKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH+DD +A ME LE I+ +G DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPYIAE 153 >gi|331005427|ref|ZP_08328807.1| A heat shock protein involved in translation [gamma proteobacterium IMCC1989] gi|330420760|gb|EGG95046.1| A heat shock protein involved in translation [gamma proteobacterium IMCC1989] Length = 177 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 12 DLQIAVENALWG---DEIHLRTLCEVVFAKAVSNLISKGYFVKENI----VELSLVFTDS 64 D+ ++ D + A+++ G + EL++ D Sbjct: 9 DVDAIIDRQNASSSADYLPNEDDLVRWVNTALTHPQVFGGVLLNKPSLVQAELTIRLVDE 68 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + LN +YR DKPTNVLSFP D +LGD+++ ++ EA K ++ Sbjct: 69 PESQQLNNDYRQKDKPTNVLSFPADL--PDIVDLPLLGDLIICAPVVIKEAEEQQKPLQS 126 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 H H+++HG LHLLGYDH+D+ DA +ME +E +L +GI PY V Sbjct: 127 HWAHMVVHGTLHLLGYDHIDENDANIMEAIETDVLAAMGIACPYTV 172 >gi|167550793|ref|ZP_02344549.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168465846|ref|ZP_02699728.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631609|gb|EDX50129.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205324293|gb|EDZ12132.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 157 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 88/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 +N LDLQ+A EN L E F + + +I + + E+++ D Sbjct: 1 MNQVILDLQLACEN-----HAGLPD--EAQFQRWLDGVIPQF----QEEAEVTIRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA K E H Sbjct: 50 ESHDLNLTYRGKDKPTNVLSFPFE--APPGIEMPLLGDLIICRQVVEQEAQEQSKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH+DD +A ME LE I+ +G DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPYIAE 153 >gi|163734561|ref|ZP_02142000.1| hypothetical protein RLO149_14078 [Roseobacter litoralis Och 149] gi|161392054|gb|EDQ16384.1| hypothetical protein RLO149_14078 [Roseobacter litoralis Och 149] Length = 166 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 59/172 (34%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+ + +E+ W + L L S + E+S + D RI L Sbjct: 1 MDIDVLIEDDRWS-ALDLDVLVLEALRAT-----SVTLNLDLEAAEVSYLACDDARITLL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------------DGCSSLMLGDIVLAYEIIEIEANVL 118 N ++R TNVLS+P + D L LGD+ +AYE EA L Sbjct: 55 NADFREKTTATNVLSWPAVDLAPVIAGAVPAPPTADLTGVLALGDVAIAYETCLREATDL 114 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 K +H+ HLI+HG LHLLGYDH+ D DA +M+G+E IL +G++DPY V Sbjct: 115 RKPLADHVTHLIVHGTLHLLGYDHIRDPDATLMQGVEAKILGKMGLDDPYMV 166 >gi|260582082|ref|ZP_05849877.1| metal-dependent hydrolase [Haemophilus influenzae NT127] gi|260094972|gb|EEW78865.1| metal-dependent hydrolase [Haemophilus influenzae NT127] Length = 154 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 83/167 (49%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + +DLQIA EN E + + N VE+++ D Sbjct: 1 MGSVLVDLQIATENIEGLPTEEQIVQWATGAVQ------------PEGNEVEMTVRIVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + LN YRG D+PTNVLSFP D +LGD+V+ +++E EA K Sbjct: 49 AESQELNLTYRGKDRPTNVLSFPFE--CPDEVELPLLGDLVICRQVVEREAAEQEKPLMA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I++ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFADPYLAE 153 >gi|119504407|ref|ZP_01626487.1| Predicted metal-dependent hydrolase [marine gamma proteobacterium HTCC2080] gi|119459915|gb|EAW41010.1| Predicted metal-dependent hydrolase [marine gamma proteobacterium HTCC2080] Length = 163 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 52/141 (36%), Positives = 71/141 (50%), Gaps = 2/141 (1%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 + + F + V+ S ELS+ +++ + LN +R PTNVLSFP Sbjct: 13 IEAPEDESFKRWVNATCSMLGADPTAQPELSIRISNTDEMTQLNQRFRNRSGPTNVLSFP 72 Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 ++ C +LGDIV+ ++ EA GK H HL +HG LHLLGYDH D Sbjct: 73 ADISAEIPCE--LLGDIVICSPLVWKEAQEQGKPPICHWAHLTVHGVLHLLGYDHETDDA 130 Query: 148 ACVMEGLERSILEDLGINDPY 168 A ME LE IL+ G +DPY Sbjct: 131 AQNMEALETQILQQFGCSDPY 151 >gi|261341272|ref|ZP_05969130.1| putative metalloprotease [Enterobacter cancerogenus ATCC 35316] gi|288316577|gb|EFC55515.1| putative metalloprotease [Enterobacter cancerogenus ATCC 35316] Length = 155 Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 86/167 (51%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVENALW-GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E+ DE +T + V + E+++ D Sbjct: 1 MSQVILDLQLACEDNSGMPDEAQFQTWLDAVI------------PQFQEESEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA K + Sbjct: 49 AESHELNLTYRGKDKPTNVLSFPFE--APPGMEMPLLGDLIICRQVVEQEAKEQQKPLDA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH+DD +A ME LE I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIDDDEAEEMESLETEIMLALGYEDPYIAE 153 >gi|332532465|ref|ZP_08408343.1| A heat shock protein involved in translation, predicted protease [Pseudoalteromonas haloplanktis ANT/505] gi|332038108|gb|EGI74555.1| A heat shock protein involved in translation, predicted protease [Pseudoalteromonas haloplanktis ANT/505] Length = 152 Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats. Identities = 59/162 (36%), Positives = 85/162 (52%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA E E + ++ + ELS+V +D + + Sbjct: 4 ELDLQIACEFDNLPSEEQFALWADKALSQ------------YRDESELSIVISDEAQSQQ 51 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG +KPTNVLSF F + G ++GD+++ I+ EA K F +H H+ Sbjct: 52 LNNDYRGKNKPTNVLSF--EFEAPPGIDIPLVGDLIICPAIVLAEAIEQEKSFHDHFAHM 109 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLG+DH+ DA ME +E+ +L +L I DPY D Sbjct: 110 VIHGCLHLLGFDHIKSDDALEMESIEKQLLAELNIADPYRDD 151 >gi|78067492|ref|YP_370261.1| putative metalloprotease [Burkholderia sp. 383] gi|77968237|gb|ABB09617.1| protein of unknown function UPF0054 [Burkholderia sp. 383] Length = 258 Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats. Identities = 59/162 (36%), Positives = 79/162 (48%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ I F +L++ F Sbjct: 109 PELDLSV-----QYGDEITSDVRKTLPKRKLIAEWIEPALFAS---AQLTVRFVGEEEGR 160 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 TLN YR D PTNVL+F A ++GD+VL ++E EA+ GK H H Sbjct: 161 TLNAGYRHKDYPTNVLTFAYDAAPDG----TVIGDLVLCCPVVEKEAHEQGKPLTAHYAH 216 Query: 129 LIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH D+DA ME LE IL LG +PY+ Sbjct: 217 LLVHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYQ 258 >gi|149914113|ref|ZP_01902645.1| S-adenosylmethionine synthetase [Roseobacter sp. AzwK-3b] gi|149812397|gb|EDM72228.1| S-adenosylmethionine synthetase [Roseobacter sp. AzwK-3b] Length = 165 Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 84/164 (51%), Gaps = 19/164 (11%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 E+ W + L L E A+++L + + E++++ D RI LN ++R Sbjct: 8 EDDRWQT-LDLPGLAETAARAALTHL-----GLAPDAWEIAILACDDARIAALNADFRDK 61 Query: 78 DKPTNVLSFPTAFASSDGCS-------------SLMLGDIVLAYEIIEIEANVLGKEFEN 124 PTNVLS+P + D LGDI +A++ + EA GK + Sbjct: 62 PVPTNVLSWPETDLAPDTPGARPEAPAQAGDDAPTPLGDIAIAWDTCQREAEAAGKPLPD 121 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H+ HLI+H LHLLGYDH+ D+DA +ME E +IL LG+ DPY Sbjct: 122 HVTHLIVHAVLHLLGYDHIRDQDATLMETTEVAILGKLGVPDPY 165 >gi|312797210|ref|YP_004030132.1| hypothetical protein [Burkholderia rhizoxinica HKI 454] gi|312168985|emb|CBW75988.1| Hypothetical metal-binding protein [Burkholderia rhizoxinica HKI 454] Length = 157 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 50/132 (37%), Positives = 67/132 (50%), Gaps = 7/132 (5%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 ++ + F EL++ F D LN YRG D PTNVL+F + ++ Sbjct: 29 RARIAGWVRAALFA---PAELTIRFVDEQEGRALNRSYRGKDYPTNVLTFAYGESDNE-- 83 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 + GD+VL ++E EA K + H HLI+HG LH GYDH DD+ A ME +E Sbjct: 84 --PVSGDLVLCCPVVESEAREQHKPLDAHYAHLIVHGVLHAQGYDHEDDEQAREMESIET 141 Query: 157 SILEDLGINDPY 168 IL LG DPY Sbjct: 142 DILARLGYPDPY 153 >gi|259909114|ref|YP_002649470.1| hypothetical protein YbeY [Erwinia pyrifoliae Ep1/96] gi|224964736|emb|CAX56253.1| conserved uncharacterized protein YbeY [Erwinia pyrifoliae Ep1/96] gi|283479141|emb|CAY75057.1| putative metalloprotease ybeY [Erwinia pyrifoliae DSM 12163] Length = 155 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 86/166 (51%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + LDLQ+A E L T E F + + ++ + + E+++ D Sbjct: 1 MTQVILDLQLAC-----KSEQGLPT--EGDFQRWLEAVLPQF----QPESEVTIRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA K E H Sbjct: 50 ESHQLNHTYRGKDKPTNVLSFPFE--APPGIELPLLGDLIICRQVVEQEAAEQEKVLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH+ D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVIHGSLHLLGYDHIVDDEAEEMESLETEIMLALGYPDPYISE 153 >gi|198244509|ref|YP_002214657.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205351953|ref|YP_002225754.1| metalloprotease [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856133|ref|YP_002242784.1| metalloprotease [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|226704003|sp|B5FNB0|RRMF_SALDC RecName: Full=Probable rRNA maturation factor YbeY gi|226704004|sp|B5QWB9|RRMF_SALEP RecName: Full=Probable rRNA maturation factor YbeY gi|226704005|sp|B5R815|RRMF_SALG2 RecName: Full=Probable rRNA maturation factor YbeY gi|197939025|gb|ACH76358.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205271734|emb|CAR36568.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206707936|emb|CAR32225.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326622412|gb|EGE28757.1| Putative metalloprotease ybeY [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626992|gb|EGE33335.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 157 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 88/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A EN L E F + + +I + + E+++ D Sbjct: 1 MSQVILDLQLACEN-----HAGLPD--EAQFQRWLDGVIPQF----QEEAEVTIRLVDET 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA K E H Sbjct: 50 ESHDLNLTYRGKDKPTNVLSFPFE--APPGIEMPLLGDLIICRQVVEQEAQEQSKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH+DD +A ME LE I+ +G DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPYIAE 153 >gi|300024988|ref|YP_003757599.1| hypothetical protein Hden_3487 [Hyphomicrobium denitrificans ATCC 51888] gi|299526809|gb|ADJ25278.1| protein of unknown function UPF0054 [Hyphomicrobium denitrificans ATCC 51888] Length = 171 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 9/158 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ + ++ W L + +++ + +++ + +E L Sbjct: 13 IEVDVVEDDGDWSSLPDAPDLIARA-----AAAVAQELGDSDGSGLVAVALSSDASVEVL 67 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N ++RG KPTNVLSFP + D +GD++LA E + EA+ G E+HL HL+ Sbjct: 68 NGQFRGKPKPTNVLSFPAGEGAPDD----FIGDVILAAETVRREADEQGVSPEHHLQHLV 123 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHL G+DH+ +A ME +E SIL LG+ +PY Sbjct: 124 VHGILHLFGFDHMSADEAEHMEAIEISILSKLGVANPY 161 >gi|123443202|ref|YP_001007176.1| putative metalloprotease [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332160872|ref|YP_004297449.1| putative metalloprotease [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|145572776|sp|A1JQ74|RRMF_YERE8 RecName: Full=Probable rRNA maturation factor gi|122090163|emb|CAL13026.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318604775|emb|CBY26273.1| metal-dependent hydrolase [Yersinia enterocolitica subsp. palearctica Y11] gi|325665102|gb|ADZ41746.1| putative metalloprotease [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863404|emb|CBX73526.1| putative metalloprotease YE2987 [Yersinia enterocolitica W22703] Length = 157 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQIA ++ E + E V + + E+++ D Sbjct: 1 MSQVILDLQIACADSQGLPTEADFQHWLEAVL------------PQFQEVSEVTIRVVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP + +LGD+++ +++E EA K Sbjct: 49 AESHELNLTYRGKDKPTNVLSFPFE--APPEIELPLLGDLIICRQVVEQEAVEQEKALLA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH+ D +A ME +E I++ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIVDDEAEEMESIETEIMQSLGYPDPYISE 153 >gi|301168606|emb|CBW28195.1| conserved protein [Haemophilus influenzae 10810] Length = 154 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 83/167 (49%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + +DLQIA EN E + + N VE+++ D Sbjct: 1 MGSVLVDLQIATENIEGLPTEEQIVQWATAAIQ------------PEGNEVEMTVRIVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG D+PTNVLSFP D +LGD+V+ +++E EA K Sbjct: 49 AESHELNLTYRGKDRPTNVLSFPFE--CPDEVELPLLGDLVICRQVVEREAAEQEKPLMA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I++ LG +DPY + Sbjct: 107 HWAHMVVHGCLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYLAE 153 >gi|254490268|ref|ZP_05103457.1| conserved hypothetical protein TIGR00043, putative [Methylophaga thiooxidans DMS010] gi|224464401|gb|EEF80661.1| conserved hypothetical protein TIGR00043, putative [Methylophaga thiooxydans DMS010] Length = 155 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 56/137 (40%), Positives = 73/137 (53%), Gaps = 6/137 (4%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E F + ++ E ELS+ D LN +YRG PTNVLSFP S Sbjct: 18 EAAFQRWAEAALATV----EEDCELSIRLVDEDESAELNSQYRGKTGPTNVLSFPFD--S 71 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 +LGD+V+ I+E EA K E+H H++IHG LHLLGYDH++D +A ME Sbjct: 72 DIALEPTLLGDLVICVPIVEKEAQQQDKIAEHHWAHMVIHGCLHLLGYDHIEDDEAEEME 131 Query: 153 GLERSILEDLGINDPYE 169 LE IL + I +PYE Sbjct: 132 TLEIQILHKMNITNPYE 148 >gi|145630707|ref|ZP_01786486.1| hypothetical protein CGSHi22421_02154 [Haemophilus influenzae R3021] gi|144983833|gb|EDJ91283.1| hypothetical protein CGSHi22421_02154 [Haemophilus influenzae R3021] Length = 154 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 84/167 (50%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + +DLQIA EN E + + N VE+++ D Sbjct: 1 MGSVLVDLQIATENIEGLPTEEQIVQWATGAVQ------------PEGNEVEMTVRIVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + LN YRG D+PTNVLSFP D +LGD+V+ +++E EA K Sbjct: 49 AESQELNLTYRGKDRPTNVLSFPFE--CPDEVELPLLGDLVICRQVVEREAAEQEKPLMA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I++ LG +DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYLAE 153 >gi|301155988|emb|CBW15458.1| conserved protein [Haemophilus parainfluenzae T3T1] Length = 154 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 82/167 (49%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + +DLQ+A EN E + + + VE+++ D Sbjct: 1 MGNMIIDLQLASENTEGLPSEAQILQWATAAVQ------------PESDNVEMTVRIVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG D+PTNVLSFP D +LGD+V+ +++E EA K Sbjct: 49 AESHDLNLTYRGKDRPTNVLSFPFE--CPDEVELPLLGDLVICRQVVEREAIEQEKPLMA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+I+HG LHLLGYDH+DD +A ME LE I++ LG DPY + Sbjct: 107 HWAHMIVHGSLHLLGYDHIDDDEAEEMESLETEIMQGLGFADPYLSE 153 >gi|119386401|ref|YP_917456.1| hypothetical protein Pden_3693 [Paracoccus denitrificans PD1222] gi|145558815|sp|A1B8B6|RRMF_PARDP RecName: Full=Probable rRNA maturation factor gi|119376996|gb|ABL71760.1| protein of unknown function UPF0054 [Paracoccus denitrificans PD1222] Length = 174 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 64/163 (39%), Positives = 86/163 (52%), Gaps = 15/163 (9%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I +E+ W D L + E A+AV + F ++ ++ D RI LN Sbjct: 15 VDIVLEDDRWED-ADLPAMAERA-ARAVGEWLGLDAF------QVVVMGCDDARIAALNA 66 Query: 73 EYRGIDKPTNVLSFPTAFAS-------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 E+RG KPTNVLS+P + + LGDI ++Y+ EA GK F +H Sbjct: 67 EFRGKPKPTNVLSWPAVEFEAREPGAHPEPPGAEELGDIAISYDTCLREAEAQGKPFADH 126 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL++H LHL GYDH+DD+DA ME ERSIL LGI DPY Sbjct: 127 ATHLLVHAMLHLAGYDHIDDEDAETMEDAERSILGKLGIPDPY 169 >gi|300715841|ref|YP_003740644.1| conserved uncharacterized protein YbeY [Erwinia billingiae Eb661] gi|299061677|emb|CAX58793.1| conserved uncharacterized protein YbeY [Erwinia billingiae Eb661] Length = 157 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 57/166 (34%), Positives = 87/166 (52%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E L E F + + ++ + + E+++ D Sbjct: 1 MSTVILDLQLACE-----KPAGLP--AESDFRRWLEAVLPQF----QEESEVTVRVVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA K H Sbjct: 50 ESHELNHTYRGKDKPTNVLSFPFE--APPGIELPLLGDLIICRQVVEKEAAEQEKPVLAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME +E I+ LG +DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEADEMESIETEIMLALGYDDPYISE 153 >gi|157962956|ref|YP_001502990.1| putative metalloprotease [Shewanella pealeana ATCC 700345] gi|189039823|sp|A8H7B8|RRMF_SHEPA RecName: Full=Probable rRNA maturation factor gi|157847956|gb|ABV88455.1| protein of unknown function UPF0054 [Shewanella pealeana ATCC 700345] Length = 156 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 82/159 (51%), Gaps = 14/159 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LD+Q+AVE + L + +S EL++ D + L Sbjct: 10 LDVQVAVEGFELPSQAELELWVKTALRDTMSE------------AELTIRIVDVEESQEL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP + G +LGD+V+ ++E EA K H H++ Sbjct: 58 NMTYRGKDKPTNVLSFPFE--APPGIELPLLGDLVICAAVVEQEAIDQNKPLLAHWAHMV 115 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D +A ME LE ++E LG +PY+ Sbjct: 116 VHGCLHLLGYDHIEDVEAEEMESLETQLIESLGYINPYK 154 >gi|167625136|ref|YP_001675430.1| putative metalloprotease [Shewanella halifaxensis HAW-EB4] gi|189039845|sp|B0TR40|RRMF_SHEHH RecName: Full=Probable rRNA maturation factor gi|167355158|gb|ABZ77771.1| protein of unknown function UPF0054 [Shewanella halifaxensis HAW-EB4] Length = 156 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 82/159 (51%), Gaps = 14/159 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIAVE + L + +S EL++ D + L Sbjct: 10 LDLQIAVEGFELPSQAELELWVKTALRDTMSE------------AELTIRIVDVEESQEL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP + G +LGD+V+ +++ EA K H H++ Sbjct: 58 NSTYRGKDKPTNVLSFPFE--APPGIELPLLGDLVICAAVVKQEAMDQNKPLIAHWAHMV 115 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH+DD +A ME LE ++E LG +PY+ Sbjct: 116 VHGCLHLLGYDHIDDSEAEEMESLETHLIESLGYINPYK 154 >gi|323495443|ref|ZP_08100520.1| metal-binding heat shock protein [Vibrio brasiliensis LMG 20546] gi|323310366|gb|EGA63553.1| metal-binding heat shock protein [Vibrio brasiliensis LMG 20546] Length = 154 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 88/163 (53%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVE+ D + ++ + AV+ + E+++ D Sbjct: 3 IELDLQLAVESE---DGLPSLEDIQLWLSSAVTKFQPQ--------AEVTVRIVDEQESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN +YRG DKPTNVLSFP + G +LGD+++ +++E EA K H H Sbjct: 52 QLNHDYRGKDKPTNVLSFPFE--APPGMEIDLLGDLIICRQVVEREAIEQNKPLMAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGFEDPYLAE 152 >gi|312882699|ref|ZP_07742436.1| putative metalloprotease [Vibrio caribbenthicus ATCC BAA-2122] gi|309369660|gb|EFP97175.1| putative metalloprotease [Vibrio caribbenthicus ATCC BAA-2122] Length = 154 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 89/161 (55%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIAVEN ++ + ++ + E+++ D + L Sbjct: 5 LDLQIAVEND---KDLPTYEDILLWLDSTLAKF--------KPQAEVTVRVVDEPESQEL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YRG DKPTNVLSFP + G +LGD+V+ +++E EA K +H H++ Sbjct: 54 NHDYRGKDKPTNVLSFPFE--APPGIDIDLLGDLVICKQVVEREAIEQNKPLISHWAHMV 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH++D++A ME LE I++ +G +DPY + Sbjct: 112 VHGCLHLLGYDHIEDQEAEEMESLETEIMKSMGYSDPYITE 152 >gi|68248555|ref|YP_247667.1| putative metalloprotease [Haemophilus influenzae 86-028NP] gi|148827164|ref|YP_001291917.1| putative metalloprotease [Haemophilus influenzae PittGG] gi|81337018|sp|Q4QPP0|RRMF_HAEI8 RecName: Full=Probable rRNA maturation factor gi|166228383|sp|A5UFH8|RRMF_HAEIG RecName: Full=Probable rRNA maturation factor gi|68056754|gb|AAX87007.1| conserved hypothetical protein [Haemophilus influenzae 86-028NP] gi|148718406|gb|ABQ99533.1| hypothetical protein CGSHiGG_02480 [Haemophilus influenzae PittGG] gi|309972862|gb|ADO96063.1| Conserved hypothetical protein [Haemophilus influenzae R2846] Length = 154 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 83/167 (49%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + +DLQIA EN E + + N VE+++ D Sbjct: 1 MGSVLVDLQIATENIEGLPTEEQIVQWATGAVQ------------PEGNEVEMTVRIVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG D+PTNVLSFP D +LGD+V+ +++E EA K Sbjct: 49 AESHELNLTYRGKDRPTNVLSFPFE--CPDEVELPLLGDLVICRQVVEREAAEQEKPLMA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I++ LG +DPY + Sbjct: 107 HWAHMVVHGCLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYLAE 153 >gi|206559302|ref|YP_002230063.1| unkown domain/putative metalloprotease fusion protein [Burkholderia cenocepacia J2315] gi|198035340|emb|CAR51215.1| conserved hypothetical protein [Burkholderia cenocepacia J2315] Length = 258 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 56/160 (35%), Positives = 80/160 (50%), Gaps = 11/160 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L+L ++V+ DEI + K ++ + F +L++ F + TL Sbjct: 109 LELDLSVQYG---DEITSDVRKTLPKRKLIAEWLEPALFAS---AQLTVRFVGENEGRTL 162 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YR D PTNVL+F A ++GD+VL ++E EA+ GK H HL+ Sbjct: 163 NAGYRHKDYPTNVLTFAYDAAPDG----TVIGDLVLCCPVVEKEAHDQGKPLMAHYAHLL 218 Query: 131 IHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 +HG LH GYDH D+DA ME LE IL LG +PY+ Sbjct: 219 VHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYQ 258 >gi|16764045|ref|NP_459660.1| metalloprotease [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167990678|ref|ZP_02571778.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|17865774|sp|O87574|RRMF_SALTY RecName: Full=Probable rRNA maturation factor YbeY gi|16419182|gb|AAL19619.1| putative metal-dependent hydrolase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205330884|gb|EDZ17648.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261245940|emb|CBG23742.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992404|gb|ACY87289.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157268|emb|CBW16756.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911700|dbj|BAJ35674.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226248|gb|EFX51299.1| metal-dependent hydrolase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128985|gb|ADX16415.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987612|gb|AEF06595.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 157 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 88/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A EN L E F + + +I + + E+++ D Sbjct: 1 MSQVILDLQLACEN-----HAGLPD--EAQFQRWLDGVIPQF----QEEAEVTIRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA K E H Sbjct: 50 ESHDLNLTYRGKDKPTNVLSFPFE--APAGIEMPLLGDLIICRQVVEQEAQEQSKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH+DD +A ME LE I+ +G DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPYIAE 153 >gi|147673894|ref|YP_001216433.1| putative metalloprotease [Vibrio cholerae O395] gi|153827447|ref|ZP_01980114.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|153831226|ref|ZP_01983893.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|183179697|ref|ZP_02957908.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|262168626|ref|ZP_06036321.1| predicted metal-dependent hydrolase [Vibrio cholerae RC27] gi|172047421|sp|A5F2X4|RRMF_VIBC3 RecName: Full=Probable rRNA maturation factor gi|146315777|gb|ABQ20316.1| conserved hypothetical protein [Vibrio cholerae O395] gi|148873296|gb|EDL71431.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|149738624|gb|EDM52977.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|183013108|gb|EDT88408.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|227012777|gb|ACP08987.1| conserved hypothetical protein [Vibrio cholerae O395] gi|262022744|gb|EEY41450.1| predicted metal-dependent hydrolase [Vibrio cholerae RC27] Length = 154 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN E L + E +S+ + E+++ D Sbjct: 3 IELDLQLAVEN-----EHGLPSEAEFAL------WLSRTITPFQPQAEVTVRIVDEAESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YRG DKPTNVLSFP + G +LGD+V+ +++E EA K + H H Sbjct: 52 ALNLNYRGKDKPTNVLSFPFE--APPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAE 152 >gi|170703554|ref|ZP_02894307.1| protein of unknown function UPF0054 [Burkholderia ambifaria IOP40-10] gi|170131542|gb|EDT00117.1| protein of unknown function UPF0054 [Burkholderia ambifaria IOP40-10] Length = 261 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 79/161 (49%), Gaps = 11/161 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L+L ++V+ DEI K ++ I F + +L++ F T Sbjct: 111 ELELDLSVQYG---DEITGDVRKACPKRKLIAEWIEPALF---SSAQLTVRFVGEEEGRT 164 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D PTNVL+F A ++GD+VL ++E EA GK H HL Sbjct: 165 LNDGYRHKDYPTNVLTFAYDPAPDG----TVIGDLVLCCPVVEKEAQEQGKPLAAHYAHL 220 Query: 130 IIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 ++HG LH GYDH ++DA ME LE +IL LG +PY+ Sbjct: 221 LVHGALHAQGYDHETSEEDAAEMEALEVAILAKLGFPNPYQ 261 >gi|241662039|ref|YP_002980399.1| unkown domain/ metalloprotease fusion protein [Ralstonia pickettii 12D] gi|240864066|gb|ACS61727.1| protein of unknown function UPF0054 [Ralstonia pickettii 12D] Length = 270 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 76/161 (47%), Gaps = 10/161 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L L + V+ DE+ + + + I+ F +L++ F T Sbjct: 119 MLTLDLTVQYG---DELKAAARKALPKERDIEAWIAPALFAD---AQLNVRFVGEEEGRT 172 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG D TNVL+F A ++ D + DIVL ++E EA K H HL Sbjct: 173 LNRTYRGKDYATNVLTFSYAESAED----PVSADIVLCCAVVEKEAKEQKKPLTAHYAHL 228 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 I+HG LH GYDH D DA MEG+E IL DLG DPY Sbjct: 229 IVHGALHAQGYDHEDAADAKEMEGIETEILRDLGFADPYAD 269 >gi|292487619|ref|YP_003530491.1| putative metalloprotease ybeY [Erwinia amylovora CFBP1430] gi|292898857|ref|YP_003538226.1| hypothetical protein EAM_1139 [Erwinia amylovora ATCC 49946] gi|291198705|emb|CBJ45814.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946] gi|291553038|emb|CBA20083.1| putative metalloprotease ybeY [Erwinia amylovora CFBP1430] gi|312171726|emb|CBX79984.1| putative metalloprotease ybeY [Erwinia amylovora ATCC BAA-2158] Length = 155 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 83/167 (49%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + LDLQ+A E+ E + E V ++ E+++ D Sbjct: 1 MTQVILDLQLACESQQGLPTEADFQRWLEAVL------------PQFQSESEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG +KPTNVLSFP + G +LGD+++ +++E EA K E Sbjct: 49 AESHHLNHTYRGKEKPTNVLSFPFE--APPGIELPLLGDLIICRQVVEHEAAEQEKALEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H++IHG LHLLGYDH+ D +A ME LE I+ LG DPY + Sbjct: 107 HWAHMVIHGSLHLLGYDHIVDDEAEEMESLETEIMLALGYPDPYISE 153 >gi|319774955|ref|YP_004137443.1| hypothetical protein HICON_02870 [Haemophilus influenzae F3047] gi|329123148|ref|ZP_08251718.1| metal-dependent hydrolase [Haemophilus aegyptius ATCC 11116] gi|317449546|emb|CBY85750.1| conserved protein [Haemophilus influenzae F3047] gi|327471703|gb|EGF17145.1| metal-dependent hydrolase [Haemophilus aegyptius ATCC 11116] Length = 154 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 84/167 (50%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + +DLQIA EN E + V + N VE+++ D Sbjct: 1 MGSVLVDLQIATENIEGLPTEEQIVQWATVAIQ------------PEGNEVEMTVRIVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG D+PTNVLSFP D +LGD+V+ +++E EA K Sbjct: 49 AESHELNLTYRGKDRPTNVLSFPFE--CPDEVELPLLGDLVICRQVVEREAAEQEKPLMA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I++ LG +DPY + Sbjct: 107 HWAHMVVHGCLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYLAE 153 >gi|88705748|ref|ZP_01103458.1| Protein of unknown function, UPF0054 [Congregibacter litoralis KT71] gi|88700261|gb|EAQ97370.1| Protein of unknown function, UPF0054 [Congregibacter litoralis KT71] Length = 163 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 76/162 (46%), Gaps = 9/162 (5%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L L + E ++ + +A ++ G E +L D ++ Sbjct: 1 MLTLDVF-------RETVEKSPDDQTLLRAAETALTVGSPAAHGHWEAALRIVDEAEMQQ 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YR + PTNVLSFP + + +LGDIV+ +++ EA GK H H+ Sbjct: 54 LNAQYRARNTPTNVLSFPADLPADVTLN--LLGDIVICAPVVKKEATNQGKPLAAHWDHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLG+DH D +A ME LE L LG PY D Sbjct: 112 LVHGVLHLLGFDHESDAEATHMESLETQALATLGWPCPYNAD 153 >gi|251791997|ref|YP_003006717.1| putative metalloprotease [Aggregatibacter aphrophilus NJ8700] gi|247533384|gb|ACS96630.1| putative metalloprotease in flp 5' region [Aggregatibacter aphrophilus NJ8700] Length = 154 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 85/166 (51%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + +DLQIA E E L T + + + + + VE+++ D Sbjct: 1 MGKMIIDLQIACEQ-----ETGLPTAEQ------IEQWATVAVQPQTDEVEMTVRIVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG D+PTNVLSFP D +LGD+V+ +++E EA GK H Sbjct: 50 ESHALNLNYRGKDRPTNVLSFPFE--CPDEVELPLLGDLVICRQVVEREAQEQGKPLMAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMESLETQIMIGLGFVDPYLSE 153 >gi|189351456|ref|YP_001947084.1| unkown domain/putative metalloprotease fusion protein [Burkholderia multivorans ATCC 17616] gi|189335478|dbj|BAG44548.1| conserved hypothetical protein [Burkholderia multivorans ATCC 17616] Length = 258 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L ++V+ DEI + K ++ + F ++++ F TLN Sbjct: 110 ELDLSVQYG---DEITSEVRKTLPKRKLIAEWLEPALFA---NAQITVRFVGETEGRTLN 163 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D PTNVL+F A ++GD+VL ++E EA K H HL++ Sbjct: 164 AGYRHKDYPTNVLTFAYDPAPDG----TVIGDLVLCCPVVEKEAREQDKPLAAHYAHLLV 219 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH D+DA ME LE IL LG +PY Sbjct: 220 HGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYR 258 >gi|187927509|ref|YP_001897996.1| unkown domain/putative metalloprotease fusion protein [Ralstonia pickettii 12J] gi|309779789|ref|ZP_07674544.1| hypothetical protein HMPREF1004_01138 [Ralstonia sp. 5_7_47FAA] gi|187724399|gb|ACD25564.1| protein of unknown function UPF0054 [Ralstonia pickettii 12J] gi|308921366|gb|EFP67008.1| hypothetical protein HMPREF1004_01138 [Ralstonia sp. 5_7_47FAA] Length = 270 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 76/161 (47%), Gaps = 10/161 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L L + V+ DE+ + + + I+ F +L++ F T Sbjct: 119 MLTLDLTVQYG---DELKAAARKALPKERDIEGWIAPALFAD---AQLNVRFVGEEEGRT 172 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG D TNVL+F A ++ D + DIVL ++E EA K H HL Sbjct: 173 LNRTYRGKDYATNVLTFSYAESAED----PVSADIVLCCTVVEKEAKEQKKPLLAHYAHL 228 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 I+HG LH GYDH D DA MEG+E IL DLG DPY Sbjct: 229 IVHGALHAQGYDHEDAADAKEMEGIETEILRDLGFADPYAD 269 >gi|237810909|ref|YP_002895360.1| putative conserved hypothetical protein [Burkholderia pseudomallei MSHR346] gi|237506403|gb|ACQ98721.1| putative conserved hypothetical protein [Burkholderia pseudomallei MSHR346] Length = 274 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L +AV+ DEI + K ++ + F + + ++ F + LN Sbjct: 126 ELDLAVQYG---DEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGRALN 179 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D TNVL+F + + D+VL ++E EA GK H HL++ Sbjct: 180 HSYRHKDYATNVLTFAYGEEPDG----VTVADLVLCCPVVEKEAREQGKTLVAHYAHLLV 235 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 236 HGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 274 >gi|167718180|ref|ZP_02401416.1| hypothetical protein BpseD_04113 [Burkholderia pseudomallei DM98] gi|167901393|ref|ZP_02488598.1| hypothetical protein BpseN_03886 [Burkholderia pseudomallei NCTC 13177] Length = 273 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L +AV+ DEI + K ++ + F + + ++ F + LN Sbjct: 125 ELDLAVQYG---DEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGRALN 178 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D TNVL+F + + D+VL ++E EA GK H HL++ Sbjct: 179 HSYRHKDYATNVLTFAYGEEPDG----VTVADLVLCCPVVEKEAREQGKTLVAHYAHLLV 234 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 235 HGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 273 >gi|161504168|ref|YP_001571280.1| putative metalloprotease [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189041074|sp|A9MKB9|RRMF_SALAR RecName: Full=Probable rRNA maturation factor YbeY gi|160865515|gb|ABX22138.1| hypothetical protein SARI_02274 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 155 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 86/167 (51%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A EN + DE + + V + E+++ D Sbjct: 1 MSQVILDLQLACENHSGLPDEAQFQRWLDGVI------------PQFQEASEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA K E Sbjct: 49 AESHDLNLTYRGKDKPTNVLSFPFE--APPGIEMPLLGDLIICRQVVEQEAQEQDKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH+DD +A ME LE I+ +G DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPYIAE 153 >gi|134279773|ref|ZP_01766485.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 305] gi|254181743|ref|ZP_04888340.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 1655] gi|134248973|gb|EBA49055.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 305] gi|184212281|gb|EDU09324.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 1655] Length = 271 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L +AV+ DEI + K ++ + F + + ++ F + LN Sbjct: 123 ELDLAVQYG---DEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGRALN 176 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D TNVL+F + + D+VL ++E EA GK H HL++ Sbjct: 177 HSYRHKDYATNVLTFAYGEEPDG----VTVADLVLCCPVVEKEAREQGKTLVAHYAHLLV 232 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 233 HGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 271 >gi|126219079|gb|ABN82585.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 668] Length = 274 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L +AV+ DEI + K ++ + F + + ++ F + LN Sbjct: 126 ELDLAVQYG---DEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGRALN 179 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D TNVL+F + + D+VL ++E EA GK H HL++ Sbjct: 180 HSYRHKDYATNVLTFAYGEEPDG----VTVADLVLCCPVVEKEAREQGKTLVAHYAHLLV 235 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 236 HGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 274 >gi|228993242|ref|YP_001057758.2| unkown domain/putative metalloprotease fusion protein [Burkholderia pseudomallei 668] Length = 273 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L +AV+ DEI + K ++ + F + + ++ F + LN Sbjct: 125 ELDLAVQYG---DEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGRALN 178 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D TNVL+F + + D+VL ++E EA GK H HL++ Sbjct: 179 HSYRHKDYATNVLTFAYGEEPDG----VTVADLVLCCPVVEKEAREQGKTLVAHYAHLLV 234 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 235 HGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 273 >gi|217420118|ref|ZP_03451624.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 576] gi|242316823|ref|ZP_04815839.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 1106b] gi|52208729|emb|CAH34665.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] gi|126226010|gb|ABN89550.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 1106a] gi|217397422|gb|EEC37438.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 576] gi|242140062|gb|EES26464.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 1106b] Length = 271 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L +AV+ DEI + K ++ + F + + ++ F + LN Sbjct: 123 ELDLAVQYG---DEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGRALN 176 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D TNVL+F + + D+VL ++E EA GK H HL++ Sbjct: 177 HSYRHKDYATNVLTFAYGEEPDG----VTVADLVLCCPVVEKEAREQGKTLVAHYAHLLV 232 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 233 HGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 271 >gi|167814343|ref|ZP_02446023.1| hypothetical protein Bpse9_04323 [Burkholderia pseudomallei 91] gi|167844394|ref|ZP_02469902.1| hypothetical protein BpseB_03824 [Burkholderia pseudomallei B7210] gi|167892907|ref|ZP_02480309.1| hypothetical protein Bpse7_04011 [Burkholderia pseudomallei 7894] gi|167909622|ref|ZP_02496713.1| hypothetical protein Bpse112_03959 [Burkholderia pseudomallei 112] gi|167917637|ref|ZP_02504728.1| hypothetical protein BpseBC_03726 [Burkholderia pseudomallei BCC215] gi|229269498|ref|YP_107301.2| unkown domain/putative metalloprotease fusion protein [Burkholderia pseudomallei K96243] gi|229335614|ref|YP_001065003.2| putative metalloprotease [Burkholderia pseudomallei 1106a] gi|254187673|ref|ZP_04894185.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei Pasteur 52237] gi|254196964|ref|ZP_04903388.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei S13] gi|254296215|ref|ZP_04963672.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 406e] gi|157806091|gb|EDO83261.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 406e] gi|157935353|gb|EDO91023.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei Pasteur 52237] gi|169653707|gb|EDS86400.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei S13] Length = 270 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L +AV+ DEI + K ++ + F + + ++ F + LN Sbjct: 122 ELDLAVQYG---DEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGRALN 175 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D TNVL+F + + D+VL ++E EA GK H HL++ Sbjct: 176 HSYRHKDYATNVLTFAYGEEPDG----VTVADLVLCCPVVEKEAREQGKTLVAHYAHLLV 231 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 232 HGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 270 >gi|326796265|ref|YP_004314085.1| metalloprotease ybeY [Marinomonas mediterranea MMB-1] gi|326547029|gb|ADZ92249.1| metalloprotease ybeY [Marinomonas mediterranea MMB-1] Length = 155 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 82/164 (50%), Gaps = 14/164 (8%) Query: 6 VNLPRLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + LDLQIA E N E K + E+++ D Sbjct: 1 MQNVDLDLQIATEENDGLPSHKEFEFWAESALPK-----------DHDTCYEMTIRLVDE 49 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 +TLN EYRG +KPTNVLSFP DG +LGD+V+ +++E EA K+ + Sbjct: 50 EESQTLNNEYRGKNKPTNVLSFPFEV--PDGVELPLLGDLVICRQVVEREARDQKKDLNH 107 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H H+++HG LHL GYDH+ D +A ME LE IL L I DPY Sbjct: 108 HWCHMVVHGILHLRGYDHIKDDEAEEMEALETQILATLNIPDPY 151 >gi|121729827|ref|ZP_01682260.1| conserved hypothetical protein [Vibrio cholerae V52] gi|229512947|ref|ZP_04402413.1| hypothetical protein VCB_000590 [Vibrio cholerae TMA 21] gi|121628431|gb|EAX60925.1| conserved hypothetical protein [Vibrio cholerae V52] gi|229349840|gb|EEO14794.1| hypothetical protein VCB_000590 [Vibrio cholerae TMA 21] Length = 154 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 60/163 (36%), Positives = 88/163 (53%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN E L + E +++ + E+++ D Sbjct: 3 IELDLQLAVEN-----EHGLPSEAEFAL------WLTRTITPFQPQAEVTVRIVDEAESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YRG DKPTNVLSFP + G +LGD+V+ +++E EA K + H H Sbjct: 52 ALNLNYRGKDKPTNVLSFPFE--APPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAE 152 >gi|145629144|ref|ZP_01784943.1| hypothetical protein CGSHi22121_10090 [Haemophilus influenzae 22.1-21] gi|145633443|ref|ZP_01789173.1| hypothetical protein CGSHi3655_04405 [Haemophilus influenzae 3655] gi|145639708|ref|ZP_01795311.1| hypothetical protein CGSHiII_09331 [Haemophilus influenzae PittII] gi|148825715|ref|YP_001290468.1| putative metalloprotease [Haemophilus influenzae PittEE] gi|166229102|sp|A5UBD4|RRMF_HAEIE RecName: Full=Probable rRNA maturation factor gi|144978647|gb|EDJ88370.1| hypothetical protein CGSHi22121_10090 [Haemophilus influenzae 22.1-21] gi|144986006|gb|EDJ92608.1| hypothetical protein CGSHi3655_04405 [Haemophilus influenzae 3655] gi|145271265|gb|EDK11179.1| hypothetical protein CGSHiII_09331 [Haemophilus influenzae PittII] gi|148715875|gb|ABQ98085.1| hypothetical protein CGSHiEE_03300 [Haemophilus influenzae PittEE] gi|309750677|gb|ADO80661.1| Conserved hypothetical protein [Haemophilus influenzae R2866] Length = 154 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 83/167 (49%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + +DLQIA EN E + + N VE+++ D Sbjct: 1 MGSVLVDLQIATENIEGLPTEEQIVQWATAAIQ------------PEGNEVEMTVRIVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG D+PTNVLSFP D +LGD+V+ +++E EA K Sbjct: 49 AESHELNLTYRGKDRPTNVLSFPFE--CPDEVELPLLGDLVICRQVVEREAAEQEKPLMA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I++ LG +DPY + Sbjct: 107 HWAHMVVHGGLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYLAE 153 >gi|254435169|ref|ZP_05048676.1| conserved hypothetical protein TIGR00043 [Nitrosococcus oceani AFC27] gi|207088280|gb|EDZ65552.1| conserved hypothetical protein TIGR00043 [Nitrosococcus oceani AFC27] Length = 143 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 66/134 (49%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 + + E+++ LN+ YR + TN+LSFP S Sbjct: 8 LQADFLRWVKAALVNQSKAGEITIRVASESEAAQLNWRYRHKEGATNILSFPFEVPSCVS 67 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 +LGD+V+ ++ EA K+ + H HL++HG LHLLG+DH + +A ME LE Sbjct: 68 LDVPLLGDLVICAPVVAREALEQTKKEQAHWAHLVVHGVLHLLGFDHQQEVEAQQMESLE 127 Query: 156 RSILEDLGINDPYE 169 +ILE LG DPYE Sbjct: 128 VTILESLGYPDPYE 141 >gi|17545248|ref|NP_518650.1| metalloprotease [Ralstonia solanacearum GMI1000] gi|17427539|emb|CAD14057.1| hypothetical protein RSc0529 [Ralstonia solanacearum GMI1000] Length = 255 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 74/161 (45%), Gaps = 10/161 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L L + V++ D + + K + I+ F +L++ F D T Sbjct: 104 MLTLDLTVQHG---DALKAAARKALPKQKDIEAWIAPALFAD---AQLNVRFVDEEEGRT 157 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG D TNVL+F A D + DIVL ++E EA GK H HL Sbjct: 158 LNHTYRGKDYATNVLTFSYAETEDD----PVAADIVLCCPVVEQEAKDQGKPLRAHYAHL 213 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 I+HG LH GYDH D A MEG+E +L LG DPY Sbjct: 214 IVHGALHAQGYDHEDPAQAEEMEGIETEVLAGLGFPDPYAD 254 >gi|254247271|ref|ZP_04940592.1| hypothetical protein BCPG_02058 [Burkholderia cenocepacia PC184] gi|124872047|gb|EAY63763.1| hypothetical protein BCPG_02058 [Burkholderia cenocepacia PC184] Length = 270 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 57/160 (35%), Positives = 80/160 (50%), Gaps = 11/160 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L+L ++V+ DEI + K ++ I F +L++ F + TL Sbjct: 121 LELDLSVQYG---DEITSDVRKTLPKRKLIAEWIEPALFAS---AQLTVRFVGENEGRTL 174 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YR D PTNVL+F A ++GD+VL ++E EA+ GK H HL+ Sbjct: 175 NAGYRHKDYPTNVLTFAYDAAPDG----TVIGDLVLCCPVVEKEAHDQGKPLAAHYAHLL 230 Query: 131 IHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 +HG LH GYDH D+DA ME LE IL LG +PY+ Sbjct: 231 VHGALHAQGYDHETNDEDAAEMEALEVDILAKLGFPNPYQ 270 >gi|107023630|ref|YP_621957.1| unkown domain/ metalloprotease fusion protein [Burkholderia cenocepacia AU 1054] gi|116690715|ref|YP_836338.1| putative metalloprotease [Burkholderia cenocepacia HI2424] gi|170734058|ref|YP_001766005.1| unkown domain/putative metalloprotease fusion protein [Burkholderia cenocepacia MC0-3] gi|105893819|gb|ABF76984.1| protein of unknown function UPF0054 [Burkholderia cenocepacia AU 1054] gi|116648804|gb|ABK09445.1| protein of unknown function UPF0054 [Burkholderia cenocepacia HI2424] gi|169817300|gb|ACA91883.1| protein of unknown function UPF0054 [Burkholderia cenocepacia MC0-3] Length = 258 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 57/160 (35%), Positives = 80/160 (50%), Gaps = 11/160 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L+L ++V+ DEI + K ++ I F +L++ F + TL Sbjct: 109 LELDLSVQYG---DEITSDVRKTLPKRKLIAEWIEPALFAS---AQLTVRFVGENEGRTL 162 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YR D PTNVL+F A ++GD+VL ++E EA+ GK H HL+ Sbjct: 163 NAGYRHKDYPTNVLTFAYDAAPDG----TVIGDLVLCCPVVEKEAHDQGKPLAAHYAHLL 218 Query: 131 IHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 +HG LH GYDH D+DA ME LE IL LG +PY+ Sbjct: 219 VHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYQ 258 >gi|262172030|ref|ZP_06039708.1| predicted metal-dependent hydrolase [Vibrio mimicus MB-451] gi|261893106|gb|EEY39092.1| predicted metal-dependent hydrolase [Vibrio mimicus MB-451] Length = 154 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVE+ + + ++ + E+++ D Sbjct: 3 IELDLQLAVEDEN---GLPTEADFAQWLTRTITPFQPQ--------AEVTIRIVDEEESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YRG DKPTNVLSFP + G +LGD+V+ +++E EA K + H H Sbjct: 52 ALNLNYRGKDKPTNVLSFPFE--APPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETKIMQEMGFTDPYLAE 152 >gi|78048198|ref|YP_364373.1| putative metalloprotease [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925033|ref|ZP_08186455.1| hypothetical protein TIGR00043 [Xanthomonas perforans 91-118] gi|123730288|sp|Q3BS90|RRMF_XANC5 RecName: Full=Probable rRNA maturation factor gi|78036628|emb|CAJ24319.1| conserved hypothetical protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544545|gb|EGD15906.1| hypothetical protein TIGR00043 [Xanthomonas perforans 91-118] Length = 161 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 57/138 (41%), Positives = 73/138 (52%), Gaps = 6/138 (4%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--S 93 F K V+ + +L++ D +LN YRG D TNVLSFP Sbjct: 27 FRKWVAAALKGRI----READLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAELPEGLP 82 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 G +LGD+V+ ++ EA GK H HL +HG LHLLG+DH DDK+A ME Sbjct: 83 KGIKMPLLGDLVICAPVVAREAAEQGKLLAAHYAHLTVHGTLHLLGWDHEDDKEAEAMEQ 142 Query: 154 LERSILEDLGINDPYEVD 171 LER IL DLGI+DPY + Sbjct: 143 LEREILADLGIDDPYAGE 160 >gi|163747523|ref|ZP_02154873.1| hypothetical protein OIHEL45_01040 [Oceanibulbus indolifex HEL-45] gi|161379201|gb|EDQ03620.1| hypothetical protein OIHEL45_01040 [Oceanibulbus indolifex HEL-45] Length = 181 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 86/170 (50%), Gaps = 18/170 (10%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 D I +E+ W + + L L + +L + E++L+ D RI LN Sbjct: 14 DFDIVIEDDRW-EAVDLERLAHAAAQATLGHL-----GLDAETAEMTLLACDDARIAVLN 67 Query: 72 FEYRGIDKPTNVLSFPTAFA------------SSDGCSSLMLGDIVLAYEIIEIEANVLG 119 ++RG + TNVLS+P + L LGDI +AYE EA+ Sbjct: 68 EDFRGKARATNVLSWPAEERGAAAPGGDPLPVAPGIDGMLELGDIAMAYETCAAEASAAA 127 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 K H+ HLI+HG LHLLGYDH +D DA +MEGLER IL +G +DPY+ Sbjct: 128 KPLNAHVTHLIVHGLLHLLGYDHENDPDAMLMEGLEREILGKMGYDDPYK 177 >gi|167835504|ref|ZP_02462387.1| hypothetical protein Bpse38_03366 [Burkholderia thailandensis MSMB43] Length = 268 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L +AV+ DEI + K ++ + F + + ++ F + LN Sbjct: 120 ELDLAVQYG---DEIGDAQRKPLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGRALN 173 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D TNVL+F + + D+VL I+E EA GK H HL++ Sbjct: 174 HSYRHKDYATNVLTFAYGEEPDG----VTVADLVLCCPIVEKEAREQGKTLVAHYAHLLV 229 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 230 HGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 268 >gi|229846922|ref|ZP_04467028.1| putative metalloprotease [Haemophilus influenzae 7P49H1] gi|229810006|gb|EEP45726.1| putative metalloprotease [Haemophilus influenzae 7P49H1] Length = 154 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 83/167 (49%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + +DLQIA EN E + + N VE+++ D Sbjct: 1 MGSVLVDLQIATENIEGLPTEEQIVQWATGAVQ------------PEGNEVEMTVRIVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG D+PTNVLSFP D +LGD+V+ +++E EA K Sbjct: 49 AESHELNLTYRGKDRPTNVLSFPFE--CPDEVELPLLGDLVICRQVVEREAVEQDKPLMA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I++ LG +DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYLAE 153 >gi|297581339|ref|ZP_06943263.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297534655|gb|EFH73492.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 154 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 62/163 (38%), Positives = 88/163 (53%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN E L + E +S+ + E+++ D Sbjct: 3 IELDLQLAVEN-----EHGLPSEAEFAL------WLSRTITPFQPQAEVTIRIVDEAESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YRG DKPTNVLSFP + G +LGD+V+ +++E EA K + H H Sbjct: 52 ALNLNYRGKDKPTNVLSFPFE--APPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++D+G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQDMGFTDPYLAE 152 >gi|229523248|ref|ZP_04412655.1| hypothetical protein VIF_000104 [Vibrio cholerae TM 11079-80] gi|262190519|ref|ZP_06048763.1| predicted metal-dependent hydrolase [Vibrio cholerae CT 5369-93] gi|229339611|gb|EEO04626.1| hypothetical protein VIF_000104 [Vibrio cholerae TM 11079-80] gi|262033592|gb|EEY52086.1| predicted metal-dependent hydrolase [Vibrio cholerae CT 5369-93] Length = 154 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 60/163 (36%), Positives = 88/163 (53%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN E L + E +++ + E+++ D Sbjct: 3 IELDLQLAVEN-----EHGLPSEAEFAL------WLTRTITPFQPQAEVTIRIVDEAESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YRG DKPTNVLSFP + G +LGD+V+ +++E EA K + H H Sbjct: 52 ALNLNYRGKDKPTNVLSFPFE--APPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAE 152 >gi|261343535|ref|ZP_05971180.1| putative metalloprotease [Providencia rustigianii DSM 4541] gi|282568684|gb|EFB74219.1| putative metalloprotease [Providencia rustigianii DSM 4541] Length = 155 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 63/166 (37%), Positives = 91/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQIA EN L + E +F V+ ++ K + E+++ D Sbjct: 1 MSDVILDLQIASENIE-----GLPS--EAMFQHWVNAVLPKF----QAESEVTIRIVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + +LGD+++ +++E EA K E H Sbjct: 50 ESHDLNLTYRGKDKPTNVLSFPFE--APPEIELPLLGDLIICRQVVEKEATEQQKSEEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A MEGLE IL ++G DPY + Sbjct: 108 WAHMVVHGCLHLLGYDHIEDDEAEEMEGLETEILAEMGYADPYLAE 153 >gi|92114457|ref|YP_574385.1| hypothetical protein Csal_2336 [Chromohalobacter salexigens DSM 3043] gi|122419590|sp|Q1QV22|RRMF_CHRSD RecName: Full=Probable rRNA maturation factor gi|91797547|gb|ABE59686.1| protein of unknown function UPF0054 [Chromohalobacter salexigens DSM 3043] Length = 154 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 86/162 (53%), Gaps = 14/162 (8%) Query: 9 PRLDLQIAVEN--ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 P +D Q+A+E L + L V A+ + ELS+ F + Sbjct: 3 PDIDRQVALETATELLPTQADLEAWVGAVLAR----------HPDTDRHELSVRFVTADE 52 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + LN +YRG DKPTNVLSFP + G +LGD+ + + ++ EA GK +H Sbjct: 53 SQALNRDYRGKDKPTNVLSFPFE--APPGLPLALLGDLAICHAVVVDEAAEQGKPLAHHY 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H++IHG LHLLGYDH+DD++A ME LER +L I DPY Sbjct: 111 AHMVIHGTLHLLGYDHIDDREAEEMEALERELLAHFAIGDPY 152 >gi|83746118|ref|ZP_00943173.1| Hypothetical Metal-Binding Protein [Ralstonia solanacearum UW551] gi|207742382|ref|YP_002258774.1| hypothetical protein RSIPO_00569 [Ralstonia solanacearum IPO1609] gi|83727301|gb|EAP74424.1| Hypothetical Metal-Binding Protein [Ralstonia solanacearum UW551] gi|206593772|emb|CAQ60699.1| hypothetical protein RSIPO_00569 [Ralstonia solanacearum IPO1609] Length = 254 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 76/164 (46%), Gaps = 10/164 (6%) Query: 7 NLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 + L L + V++ D + K + I+ F +L++ F D Sbjct: 100 DAEMLTLDLTVQHG---DALKAAARKACPKQKDIEAWIAPALFAD---AQLNVRFVDEEE 153 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 TLN YRG D TNVL+F A D + D+VL ++E EA K H Sbjct: 154 GRTLNRTYRGKDYATNVLTFSYAETEHD----PVSADVVLCCPVVEKEAKDQDKPLRAHY 209 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HLI+HG LH GYDH + +A MEG+E ++L +LG DPY Sbjct: 210 AHLIVHGALHAQGYDHENPAEAKEMEGIETAVLAELGFPDPYAD 253 >gi|152996922|ref|YP_001341757.1| hypothetical protein Mmwyl1_2911 [Marinomonas sp. MWYL1] gi|189039860|sp|A6VZE3|RRMF_MARMS RecName: Full=Probable rRNA maturation factor gi|150837846|gb|ABR71822.1| protein of unknown function UPF0054 [Marinomonas sp. MWYL1] Length = 154 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 83/166 (50%), Gaps = 15/166 (9%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + LDLQIA E A E R E + + E+++ D Sbjct: 1 MAYLELDLQIATEETANLPSEADFRLWVEKALPEV------------DEEFEVTIRIVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN EYRG DKPTNVLSFP + G +LGD+V+ +I+ EA KE + Sbjct: 49 EESHALNHEYRGKDKPTNVLSFPFE--APPGLELPLLGDLVICAQIVAKEAAEQNKELFH 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 H H+ IHG LHL GYDH++D +A ME +E +L L I+DPY + Sbjct: 107 HWAHMTIHGILHLRGYDHINDDEADEMESIETELLASLSISDPYLI 152 >gi|229845426|ref|ZP_04465556.1| putative metalloprotease [Haemophilus influenzae 6P18H1] gi|319896426|ref|YP_004134619.1| hypothetical protein HIBPF00040 [Haemophilus influenzae F3031] gi|229811622|gb|EEP47321.1| putative metalloprotease [Haemophilus influenzae 6P18H1] gi|317431928|emb|CBY80274.1| conserved protein [Haemophilus influenzae F3031] Length = 154 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 83/167 (49%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + +DLQIA EN E + + N VE+++ D Sbjct: 1 MGSVLVDLQIATENIEGLPTEEQIVQWATGAVQ------------PEGNEVEMTVRIVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG D+PTNVLSFP D +LGD+V+ +++E EA K Sbjct: 49 AESHELNLTYRGKDRPTNVLSFPFE--CPDEVELPLLGDLVICRQVVEREAAEQEKPLMA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I++ LG +DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYLAE 153 >gi|229529945|ref|ZP_04419335.1| hypothetical protein VCG_003049 [Vibrio cholerae 12129(1)] gi|229333719|gb|EEN99205.1| hypothetical protein VCG_003049 [Vibrio cholerae 12129(1)] gi|327483684|gb|AEA78091.1| metal-dependent hydrolase [Vibrio cholerae LMA3894-4] Length = 154 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN E L + E +++ + E+++ D Sbjct: 3 IELDLQLAVEN-----EHGLPSEAEFAL------WLTRTITPFQPQAEVTVRIVDEAESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YRG DKPTNVLSFP + G +LGD+V+ +++E EA K + H H Sbjct: 52 ALNLNYRGKDKPTNVLSFPFE--APPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++D+G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQDMGFTDPYLAE 152 >gi|126666979|ref|ZP_01737955.1| predicted metal-dependent hydrolase [Marinobacter sp. ELB17] gi|126628695|gb|EAZ99316.1| predicted metal-dependent hydrolase [Marinobacter sp. ELB17] Length = 158 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 60/164 (36%), Positives = 86/164 (52%), Gaps = 15/164 (9%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 +N LDLQ+ + A E R ++ + + E+++ D Sbjct: 1 MNFVTLDLQLVSDAANIPSEDQFRQWSQLAWQ-------------GDEPTEVTIRIVDES 47 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 ++ LNF+YRG DKPTNVLSFP + G L+ GD+V+ I+ EA K+ H Sbjct: 48 EMQALNFQYRGKDKPTNVLSFPFE--APAGIQILLAGDLVICAPIVAQEAREQYKDTHAH 105 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 H+IIHG LHL YDH+DD +A MEGLE +L +GI +PY+ Sbjct: 106 WAHMIIHGMLHLQSYDHIDDNEAEEMEGLEIRLLAQIGITNPYD 149 >gi|149202104|ref|ZP_01879077.1| hypothetical protein RTM1035_12293 [Roseovarius sp. TM1035] gi|149144202|gb|EDM32233.1| hypothetical protein RTM1035_12293 [Roseovarius sp. TM1035] Length = 162 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 16/165 (9%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 + +E+ W L L E + +L + E+S++ D RI LN + Sbjct: 4 DVVIEDDRWQAAA-LEDLAERAARATLEHLA-----MDPEDWEISILACDDARIAVLNED 57 Query: 74 YRGIDKPTNVLSFPTAFASSD----------GCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 +R +PTNVLS+P+ +++ LGDI +A++ EA K Sbjct: 58 FRDKPQPTNVLSWPSEERAAEVSGVRPAPPMPSPDPELGDIAIAWDTCVREAAEGEKPLA 117 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +H+ HLI+H LHLLGYDHV D+DA +ME E IL LG++DPY Sbjct: 118 DHVTHLIVHAVLHLLGYDHVRDQDATLMETTEVEILGKLGVSDPY 162 >gi|226196767|ref|ZP_03792347.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei Pakistan 9] gi|225931298|gb|EEH27305.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei Pakistan 9] Length = 274 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L +AV+ DEI + K ++ + F + + ++ F + LN Sbjct: 126 ELDLAVQYG---DEIGDAQRKSLPKRKVIAEWLEPAIF---SDTQFTVRFVGADEGRALN 179 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D TNVL+F + + D+VL ++E EA GK H HL++ Sbjct: 180 HSYRHKDYATNVLTFAYGEEPDG----VTVADLVLCCPVVEKEAREQGKTLVAHYAHLLV 235 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 236 HGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 274 >gi|167822819|ref|ZP_02454290.1| hypothetical protein Bpseu9_04036 [Burkholderia pseudomallei 9] Length = 273 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L +AV+ DEI + K ++ + F + + ++ F + LN Sbjct: 125 ELDLAVQYG---DEIGDAQRKSLPKRKVIAEWLEPAIF---SDTQFTVRFVGADEGRALN 178 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D TNVL+F + + D+VL ++E EA GK H HL++ Sbjct: 179 HSYRHKDYATNVLTFAYGEEPDG----VTVADLVLCCPVVEKEAREQGKTLVAHYAHLLV 234 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 235 HGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 273 >gi|238562536|ref|ZP_00440243.2| putative conserved hypothetical protein [Burkholderia mallei GB8 horse 4] gi|251767812|ref|ZP_02268483.2| conserved hypothetical protein TIGR00043 [Burkholderia mallei PRL-20] gi|254177000|ref|ZP_04883657.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei ATCC 10399] gi|254203741|ref|ZP_04910101.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei FMH] gi|254260739|ref|ZP_04951793.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 1710a] gi|254360231|ref|ZP_04976501.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei 2002721280] gi|76578267|gb|ABA47742.1| conserved hypothetical protein TIGR00043, putative [Burkholderia pseudomallei 1710b] gi|121228785|gb|ABM51303.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei SAVP1] gi|124294661|gb|ABN03930.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei NCTC 10229] gi|126243959|gb|ABO07052.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei NCTC 10247] gi|147745253|gb|EDK52333.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei FMH] gi|148029471|gb|EDK87376.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei 2002721280] gi|160698041|gb|EDP88011.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei ATCC 10399] gi|238522405|gb|EEP85849.1| putative conserved hypothetical protein [Burkholderia mallei GB8 horse 4] gi|243061633|gb|EES43819.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei PRL-20] gi|254219428|gb|EET08812.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 1710a] Length = 271 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L +AV+ DEI + K ++ + F + + ++ F + LN Sbjct: 123 ELDLAVQYG---DEIGDAQRKSLPKRKVIAEWLEPAIF---SDTQFTVRFVGADEGRALN 176 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D TNVL+F + + D+VL ++E EA GK H HL++ Sbjct: 177 HSYRHKDYATNVLTFAYGEEPDG----VTVADLVLCCPVVEKEAREQGKTLVAHYAHLLV 232 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 233 HGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 271 >gi|53724679|ref|YP_102057.1| unkown domain/metalloprotease fusion protein [Burkholderia mallei ATCC 23344] gi|228969302|ref|YP_332300.2| unkown domain/putative metalloprotease fusion protein [Burkholderia pseudomallei 1710b] gi|229008326|ref|YP_994019.2| unkown domain/putative metalloprotease fusion protein [Burkholderia mallei SAVP1] gi|229027669|ref|YP_001081961.2| unkown domain/putative metalloprotease fusion protein [Burkholderia mallei NCTC 10247] gi|229780993|ref|YP_001028317.2| unkown domain/putative metalloprotease fusion protein [Burkholderia mallei NCTC 10229] gi|254208717|ref|ZP_04915065.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei JHU] gi|52428102|gb|AAU48695.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei ATCC 23344] gi|147750593|gb|EDK57662.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei JHU] Length = 270 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L +AV+ DEI + K ++ + F + + ++ F + LN Sbjct: 122 ELDLAVQYG---DEIGDAQRKSLPKRKVIAEWLEPAIF---SDTQFTVRFVGADEGRALN 175 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D TNVL+F + + D+VL ++E EA GK H HL++ Sbjct: 176 HSYRHKDYATNVLTFAYGEEPDG----VTVADLVLCCPVVEKEAREQGKTLVAHYAHLLV 231 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 232 HGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 270 >gi|329911493|ref|ZP_08275544.1| A heat shock protein involved in translation, putative protease [Oxalobacteraceae bacterium IMCC9480] gi|327545865|gb|EGF30976.1| A heat shock protein involved in translation, putative protease [Oxalobacteraceae bacterium IMCC9480] Length = 154 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 44/116 (37%), Positives = 63/116 (54%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 EL++ F DS TLN +YR D TNVL+F D + D++L ++++ Sbjct: 38 PAELTVRFVDSDEGRTLNRDYRSKDYATNVLTFAYNDGEEDPNDDITRADLILCTDVLQA 97 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 EA GK H HL++HG +H GYDH D+ +A ME LE +L LG +PY+ Sbjct: 98 EALAQGKPLLAHAAHLVVHGVMHAQGYDHEDEVEADEMEALEIEVLAKLGFGNPYQ 153 >gi|258621977|ref|ZP_05717006.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258627066|ref|ZP_05721862.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258580584|gb|EEW05537.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258585730|gb|EEW10450.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 154 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 57/163 (34%), Positives = 85/163 (52%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN + + ++ + E+++ D Sbjct: 3 IELDLQLAVENEN---GLPTEADFAQWLTRTITPFQPQ--------AEVTIRIVDEKESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YRG DKPTNVLSFP + G +LGD+V+ +++E EA K + H H Sbjct: 52 ALNLNYRGKDKPTNVLSFPFE--APPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAE 152 >gi|153213843|ref|ZP_01949049.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124115677|gb|EAY34497.1| conserved hypothetical protein [Vibrio cholerae 1587] Length = 154 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 60/163 (36%), Positives = 88/163 (53%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN E L + E +++ + E+++ D Sbjct: 3 IELDLQLAVEN-----EHGLPSEAEFAL------WLTRTITPFQAQAEVTVRIVDEAESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YRG DKPTNVLSFP + G +LGD+V+ +++E EA K + H H Sbjct: 52 ALNLNYRGKDKPTNVLSFPFE--APPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAE 152 >gi|167579898|ref|ZP_02372772.1| hypothetical protein BthaT_17231 [Burkholderia thailandensis TXDOH] gi|167617971|ref|ZP_02386602.1| hypothetical protein BthaB_16811 [Burkholderia thailandensis Bt4] Length = 265 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L +AV+ DEI + K ++ + F + + ++ F + TLN Sbjct: 117 ELDLAVQYG---DEIGDAQRRSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGRTLN 170 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D TNVL+F + + D+VL ++E EA GK H HL++ Sbjct: 171 HSYRHKDYATNVLTFAYGEEPDG----VTVADLVLCCPVVEKEAREQGKTLVAHYAHLLV 226 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 227 HGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 265 >gi|257140192|ref|ZP_05588454.1| unkown domain/putative metalloprotease fusion protein [Burkholderia thailandensis E264] Length = 265 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L +AV+ DEI + K ++ + F + + ++ F + TLN Sbjct: 117 ELDLAVQYG---DEIGDAQRRSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGRTLN 170 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D TNVL+F + + D+VL ++E EA GK H HL++ Sbjct: 171 HSYRHKDYATNVLTFAYGEEPDG----VTVADLVLCCPVVEKEAREQGKTLVAHYAHLLV 226 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 227 HGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 265 >gi|284159397|ref|YP_441146.3| hypothetical protein BTH_I0589 [Burkholderia thailandensis E264] gi|123537980|sp|Q2T103|RRMF_BURTA RecName: Full=Probable rRNA maturation factor gi|83655057|gb|ABC39120.1| conserved hypothetical protein TIGR00043, putative [Burkholderia thailandensis E264] Length = 437 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L +AV+ DEI + K ++ + F + + ++ F + TLN Sbjct: 289 ELDLAVQYG---DEIGDAQRRSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGRTLN 342 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D TNVL+F + + D+VL ++E EA GK H HL++ Sbjct: 343 HSYRHKDYATNVLTFAYGEEPDG----VTVADLVLCCPVVEKEAREQGKTLVAHYAHLLV 398 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 399 HGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 437 >gi|16271980|ref|NP_438177.1| putative metalloprotease [Haemophilus influenzae Rd KW20] gi|145636793|ref|ZP_01792459.1| hypothetical protein CGSHiHH_06750 [Haemophilus influenzae PittHH] gi|145641868|ref|ZP_01797443.1| hypothetical protein CGSHiR3021_01322 [Haemophilus influenzae R3021] gi|260580692|ref|ZP_05848519.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|2495567|sp|P71335|RRMF_HAEIN RecName: Full=Probable rRNA maturation factor gi|60593985|pdb|1XAX|A Chain A, Nmr Structure Of Hi0004, A Putative Essential Gene Product From Haemophilus Influenzae gi|1572948|gb|AAC21683.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|145270091|gb|EDK10028.1| hypothetical protein CGSHiHH_06750 [Haemophilus influenzae PittHH] gi|145273490|gb|EDK13361.1| hypothetical protein CGSHiR3021_01322 [Haemophilus influenzae 22.4-21] gi|260092754|gb|EEW76690.1| conserved hypothetical protein [Haemophilus influenzae RdAW] Length = 154 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 84/167 (50%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + +DLQIA EN E + + N VE+++ D Sbjct: 1 MGSVLVDLQIATENIEGLPTEEQIVQWATGAVQ------------PEGNEVEMTVRIVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG D+PTNVLSFP D +LGD+V+ +++E EA+ K Sbjct: 49 AESHELNLTYRGKDRPTNVLSFPFE--CPDEVELPLLGDLVICRQVVEREASEQEKPLMA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I++ LG +DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYLAE 153 >gi|56476161|ref|YP_157750.1| hypothetical protein ebA1336 [Aromatoleum aromaticum EbN1] gi|62901202|sp|Q5P762|RRMF_AROAE RecName: Full=Probable rRNA maturation factor gi|56312204|emb|CAI06849.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 154 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 61/146 (41%), Gaps = 9/146 (6%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 I + + E+++ LN +YRG D TN Sbjct: 17 QRAIGAENRARSPTSALIRRWALAAL---RGDAEMTVRLVGEAEGRRLNRDYRGKDYATN 73 Query: 83 VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 VL+F + + GD+VL ++ EA GK E H HLI+HG LHL G+DH Sbjct: 74 VLTFVYDES------ERLAGDLVLCVPVVAREAAEQGKPLEAHFAHLIVHGMLHLQGFDH 127 Query: 143 VDDKDACVMEGLERSILEDLGINDPY 168 +A ME LE +L LG +PY Sbjct: 128 EAPDEAEEMETLETRVLATLGYPNPY 153 >gi|300705109|ref|YP_003746712.1| metalloprotease [Ralstonia solanacearum CFBP2957] gi|299072773|emb|CBJ44128.1| Putative metalloprotease [Ralstonia solanacearum CFBP2957] Length = 254 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 77/164 (46%), Gaps = 10/164 (6%) Query: 7 NLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 + L L + V++ D + K + I+ F +L++ F D Sbjct: 100 DAEMLTLDLTVQHG---DALKGAARKACPKQKDIEAWIAPALFAD---AQLNVRFVDEEE 153 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 TLN YRG D TNVL+F A D + D+VL ++E EA GK H Sbjct: 154 GRTLNRTYRGKDYATNVLTFSYAETEHD----PVSADVVLCCPVVEKEAKDQGKPLRAHY 209 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HLI+HG LH GYDH + +A MEG+E ++L +LG DPY Sbjct: 210 AHLIVHGALHAQGYDHENPAEAKEMEGIETAVLTELGFPDPYPD 253 >gi|315497216|ref|YP_004086020.1| hypothetical protein Astex_0168 [Asticcacaulis excentricus CB 48] gi|315415228|gb|ADU11869.1| protein of unknown function UPF0054 [Asticcacaulis excentricus CB 48] Length = 156 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 58/156 (37%), Positives = 79/156 (50%), Gaps = 10/156 (6%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I VE+ W + + V A+ Y + ++L ++ TD ++ LN Sbjct: 8 IDIEVEHDNWTEALP---EVSAVVTGAIEATF--AYLGAKEQLDLVVLLTDDAEMKALNK 62 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 E+R + PTNVLSFP LGDI +E EA K + H+ HL +H Sbjct: 63 EFRQKNAPTNVLSFPA-----PDMMHPHLGDIAFGFETCVREAKEQKKTLKAHVAHLSVH 117 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 G LHLLGYDH++D +A ME LER IL LGI DPY Sbjct: 118 GALHLLGYDHINDPEAEEMEDLERKILHGLGIADPY 153 >gi|161523783|ref|YP_001578795.1| fused unkown domain/putative metalloprotease [Burkholderia multivorans ATCC 17616] gi|221200107|ref|ZP_03573150.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] gi|221206740|ref|ZP_03579752.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221211287|ref|ZP_03584266.1| conserved hypothetical protein [Burkholderia multivorans CGD1] gi|160341212|gb|ABX14298.1| protein of unknown function UPF0054 [Burkholderia multivorans ATCC 17616] gi|221168648|gb|EEE01116.1| conserved hypothetical protein [Burkholderia multivorans CGD1] gi|221173395|gb|EEE05830.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221180346|gb|EEE12750.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] Length = 237 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L ++V+ DEI + K ++ + F ++++ F TLN Sbjct: 89 ELDLSVQYG---DEITSEVRKTLPKRKLIAEWLEPALFA---NAQITVRFVGETEGRTLN 142 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D PTNVL+F A ++GD+VL ++E EA K H HL++ Sbjct: 143 AGYRHKDYPTNVLTFAYDPAPDG----TVIGDLVLCCPVVEKEAREQDKPLAAHYAHLLV 198 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH D+DA ME LE IL LG +PY Sbjct: 199 HGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYR 237 >gi|114571574|ref|YP_758254.1| hypothetical protein Mmar10_3035 [Maricaulis maris MCS10] gi|122314893|sp|Q0AK77|RRMF_MARMM RecName: Full=Probable rRNA maturation factor gi|114342036|gb|ABI67316.1| protein of unknown function UPF0054 [Maricaulis maris MCS10] Length = 160 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 55/159 (34%), Positives = 80/159 (50%), Gaps = 11/159 (6%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + + VE+ W L E + A L + V ++++ + ++N Sbjct: 4 VDLIVEDDAWSSLAGKTRLVEEAISAACKELPDRTPGV------VAILLGGDEGVASMNA 57 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 ++RG TNVLSFP + + LGDI LA+ +I+ EA +HL HLIIH Sbjct: 58 QFRGKAGATNVLSFPAGEHADN-----HLGDIALAHGVIQREAEDRDIALADHLRHLIIH 112 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GFLHL G+DH D +A VME +ER L LG+ DPY + Sbjct: 113 GFLHLQGFDHQQDDEAEVMEAIERRALARLGVADPYPNE 151 >gi|320157149|ref|YP_004189528.1| metal-dependent hydrolase [Vibrio vulnificus MO6-24/O] gi|319932461|gb|ADV87325.1| metal-dependent hydrolase [Vibrio vulnificus MO6-24/O] Length = 154 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVE+ + + + K + + E+++ DS Sbjct: 3 IELDLQLAVED---QNGLPSAQDFQTWLDKTIPPFQPQ--------AEVTIRIVDSQESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN +YRG DKPTNVLSFP + G +LGD+V+ +++E EA K H H Sbjct: 52 QLNHDYRGKDKPTNVLSFPFE--APPGMEMDLLGDLVICRQVVEQEAIEQDKPLMAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGFTDPYLAE 152 >gi|229047214|ref|NP_933708.2| putative metalloprotease [Vibrio vulnificus YJ016] gi|46577353|sp|Q7MN02|RRMF_VIBVY RecName: Full=Probable rRNA maturation factor Length = 154 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVE+ + + + K + + E+++ DS Sbjct: 3 IELDLQLAVED---QNGLPSAQDFQTWLDKTIPPFQPQ--------AEVTIRIVDSQESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN +YRG DKPTNVLSFP + G +LGD+V+ +++E EA K H H Sbjct: 52 QLNHDYRGKDKPTNVLSFPFE--APPGMEMDLLGDLVICRQVVEQEAIEQDKPLMAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGFTDPYLAE 152 >gi|171321299|ref|ZP_02910261.1| protein of unknown function UPF0054 [Burkholderia ambifaria MEX-5] gi|171093426|gb|EDT38609.1| protein of unknown function UPF0054 [Burkholderia ambifaria MEX-5] Length = 261 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 79/161 (49%), Gaps = 11/161 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L+ ++V+ DEI K ++ I F + +L++ F T Sbjct: 111 ELEFDLSVQYG---DEITGDVRKACPKRKLIAEWIEPALF---SSAQLTVRFVGEEEGRT 164 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D PTNVL+F A ++GD+VL ++E EA+ GK H HL Sbjct: 165 LNDGYRHKDYPTNVLTFAYDPAPDG----TVIGDLVLCCPVVEKEAHEQGKPLAAHYAHL 220 Query: 130 IIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 ++HG LH GYDH D+DA ME LE +IL LG +PY+ Sbjct: 221 LVHGALHAQGYDHETSDEDAAEMEALEVAILAKLGFPNPYQ 261 >gi|238028584|ref|YP_002912815.1| unkown domain/putative metalloprotease fusion protein [Burkholderia glumae BGR1] gi|237877778|gb|ACR30111.1| Hypothetical protein bglu_1g30480 [Burkholderia glumae BGR1] Length = 272 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L++ V+ DEI + K ++ +S +L++ F LN Sbjct: 124 ELELVVQYG---DEITTAQRKTLPKRKLIAEWLSTSLSAD---AQLTVRFVGEQEGRELN 177 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D PTNVL+F A +GD+V+ ++E EA K H HL++ Sbjct: 178 RGYRKKDYPTNVLTFAYDAAPDG----TTIGDLVICCPVVEKEAAEQDKPLLAHYAHLLV 233 Query: 132 HGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH ++DA ME LE IL LG +PY+ Sbjct: 234 HGALHAQGYDHERSEEDAAEMEALETDILAKLGFPNPYQ 272 >gi|325578691|ref|ZP_08148767.1| metal-dependent hydrolase [Haemophilus parainfluenzae ATCC 33392] gi|325159730|gb|EGC71861.1| metal-dependent hydrolase [Haemophilus parainfluenzae ATCC 33392] Length = 154 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + +DLQ+A EN E + + + VE+++ D Sbjct: 1 MGNMIIDLQLACENTEGLPSEEQILQWATAAVQ------------PESDNVEMTVRIVDK 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG D+PTNVLSFP D +LGD+V+ +++E EA K Sbjct: 49 AESHDLNLTYRGKDRPTNVLSFPFE--CPDEVELPLLGDLVICRQVVEREAIEQEKPLMA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+I+HG LHLLGYDH++D +A ME LE I++ LG DPY + Sbjct: 107 HWAHMIVHGSLHLLGYDHIEDDEAEEMESLETEIMQGLGFADPYLSE 153 >gi|207727982|ref|YP_002256376.1| hypothetical protein RSMK04405 [Ralstonia solanacearum MolK2] gi|206591225|emb|CAQ56837.1| hypothetical protein RSMK04405 [Ralstonia solanacearum MolK2] Length = 254 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 76/164 (46%), Gaps = 10/164 (6%) Query: 7 NLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 + L L + V++ D + K + I+ F +L++ F D Sbjct: 100 DAEMLTLDLTVQHG---DALKAAARKACPKQKDIEAWIAPALFAD---AQLNVRFVDEEE 153 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 TLN YRG D TNVL+F A D + D+VL ++E EA K H Sbjct: 154 GRTLNRTYRGKDYATNVLTFSYAETEHD----PVSADVVLCCPVVEKEAKDQDKPLRAHY 209 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HLI+HG LH GYDH + +A MEG+E ++L +LG DPY Sbjct: 210 AHLIVHGALHAQGYDHENPAEAKEMEGIETAVLAELGFPDPYAD 253 >gi|253999827|ref|YP_003051890.1| hypothetical protein Msip34_2121 [Methylovorus sp. SIP3-4] gi|253986506|gb|ACT51363.1| protein of unknown function UPF0054 [Methylovorus sp. SIP3-4] Length = 155 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 56/166 (33%), Positives = 77/166 (46%), Gaps = 21/166 (12%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + +D+Q+A E A + +F K + EL+L D Sbjct: 1 MPRLAMDVQVASEAANIP--------ADKLFRKWARATLRV-------DTELALRIVDED 45 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN +YRG D TNVL+FP ++GDI+L ++ EA GK E H Sbjct: 46 EGRALNRDYRGKDYATNVLTFPLTEE------PHLMGDIILCAPVVAREAAEQGKPIEAH 99 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL +HG LHL GYDH + A +MEGLE I+ LG +DPY + Sbjct: 100 YAHLTVHGVLHLHGYDHETEPQAELMEGLETEIVTKLGYSDPYAAE 145 >gi|172061653|ref|YP_001809305.1| unkown domain/putative metalloprotease fusion protein [Burkholderia ambifaria MC40-6] gi|171994170|gb|ACB65089.1| protein of unknown function UPF0054 [Burkholderia ambifaria MC40-6] Length = 261 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 54/161 (33%), Positives = 77/161 (47%), Gaps = 11/161 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L+ ++V+ DEI K ++ I F + +L++ F T Sbjct: 111 ELEFDLSVQYG---DEITGDVRKACPKRKLIAEWIEPALF---SSAQLTVRFVGEEEGRT 164 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D PTNVL+F ++GD+VL ++E EA GK H HL Sbjct: 165 LNDGYRHKDYPTNVLTFAYDPLPDG----TVIGDLVLCCPVVEKEAQEQGKPLAAHYAHL 220 Query: 130 IIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 ++HG LH GYDH ++DA ME LE +IL LG +PY+ Sbjct: 221 LVHGALHAQGYDHETSEEDAAEMEALEVAILAKLGFPNPYQ 261 >gi|89092051|ref|ZP_01165006.1| hypothetical protein MED92_07786 [Oceanospirillum sp. MED92] gi|89083786|gb|EAR63003.1| hypothetical protein MED92_07786 [Oceanospirillum sp. MED92] Length = 151 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 53/160 (33%), Positives = 78/160 (48%), Gaps = 15/160 (9%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 D+Q VE E + E ++ + E+ + + LN Sbjct: 6 DIQFEVE-GNLPSESDFQRWVEAALSE------------FRDEGEICIRVVSPEESQELN 52 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR DKPTNVLSFP +G +LGD+++ E++ EA+ K +H H+++ Sbjct: 53 HTYRDKDKPTNVLSFPFDI--PEGIPIQLLGDLIICAEVVVTEASEQNKALFDHWAHMVV 110 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HG LHL+G+DH+ D +A ME LER IL L I DPY + Sbjct: 111 HGCLHLIGFDHIKDDEAEEMENLERQILASLDIADPYRDE 150 >gi|238897293|ref|YP_002922970.1| putative metal-dependent hydrolase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259585969|sp|C4K8I5|RRMF_HAMD5 RecName: Full=Probable rRNA maturation factor gi|229465048|gb|ACQ66822.1| putative metal-dependent hydrolase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 151 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 59/164 (35%), Positives = 87/164 (53%), Gaps = 13/164 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 +N LDLQIA + + ++ + A+S + E+++ D Sbjct: 1 MNQIILDLQIACVDNQ---GLPNENDFQLWLSSAISPF--------KKNAEVTIRLVDEI 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LNF+YR IDKPTNVLSFP F S +LGD+++ +I+E EA + K H Sbjct: 50 ESRQLNFQYRQIDKPTNVLSFP--FISPVQVPLPLLGDLIICRQIVEKEAVLQKKALWAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 H+++HG LHLLGYDH+ + DA ME +E I+ LG +PY+ Sbjct: 108 WAHMVVHGALHLLGYDHILNDDAKKMESIETEIMMYLGYPNPYD 151 >gi|238786073|ref|ZP_04630031.1| metalloprotease [Yersinia bercovieri ATCC 43970] gi|238713012|gb|EEQ05066.1| metalloprotease [Yersinia bercovieri ATCC 43970] Length = 154 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 55/162 (33%), Positives = 79/162 (48%), Gaps = 15/162 (9%) Query: 11 LDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA + E + E V + + E+++ D Sbjct: 3 LDLQIACANSQGLPTEADFQQWLEAVL------------PQFQEVSEVTIRLVDEAESHQ 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DK TNVLSFP + +LGD+++ +++E EA K H H+ Sbjct: 51 LNLTYRGKDKSTNVLSFPFE--APPEIELPLLGDLIICRQVVEQEAVEQEKALFAHWAHM 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH+ D +A ME +E I++ LG DPY + Sbjct: 109 VVHGSLHLLGYDHIVDDEAEEMESIETEIMQSLGYPDPYISE 150 >gi|330818259|ref|YP_004361964.1| hypothetical protein bgla_1g34050 [Burkholderia gladioli BSR3] gi|327370652|gb|AEA62008.1| hypothetical protein bgla_1g34050 [Burkholderia gladioli BSR3] Length = 269 Score = 127 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L++ V+ DEI ++ K ++ +S F + +L++ F LN Sbjct: 121 ELELVVQYG---DEIAASQRKKLPKPKLIAEWLSTALF---SDAQLTVRFVGEKEGRELN 174 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D PTNVL+F A +GD+VL ++E EA K H HL++ Sbjct: 175 GGYRKKDYPTNVLTFAYDQAPDG----TTIGDLVLCCPVVEKEAGEQDKTLVAHYAHLLV 230 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPY 168 HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 231 HGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPY 268 >gi|85713015|ref|ZP_01044053.1| Predicted metal-dependent hydrolase [Idiomarina baltica OS145] gi|85693184|gb|EAQ31144.1| Predicted metal-dependent hydrolase [Idiomarina baltica OS145] Length = 156 Score = 127 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 82/157 (52%), Gaps = 10/157 (6%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 Q+A E A E+ + E+ A++ EL++ D +LN E Sbjct: 8 QVACETA---SELPQQADIELWVETALALA-----GYDNTEAELTVRVVDPAEGRSLNHE 59 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 +R D TNVLSFP + +LGD+V+ +++E EA+ K +H H++IHG Sbjct: 60 FRSKDYATNVLSFPFE--APIEMPIPLLGDLVICAQVVEREADEQQKPLMHHWTHMVIHG 117 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 LHLLGYDH++D +A ME +E+ L L I DPY++ Sbjct: 118 TLHLLGYDHIEDAEAEHMERIEKDALARLDIPDPYQI 154 >gi|167568853|ref|ZP_02361727.1| hypothetical protein BoklC_03336 [Burkholderia oklahomensis C6786] Length = 262 Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L +AV+ DE+ + K ++ + F + + ++ F + LN Sbjct: 114 ELDLAVQYG---DEVGDAQRRSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGRALN 167 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D TNVL+F + + D+VL ++E EA GK H HL++ Sbjct: 168 NSYRHKDYATNVLTFAYGEEPDG----VTVADLVLCCPVVEKEAREQGKTLVAHYAHLLV 223 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH D+DA ME LE IL LG +PY Sbjct: 224 HGALHAQGYDHERGDEDAAEMEALEIDILAKLGFPNPYR 262 >gi|167561618|ref|ZP_02354534.1| hypothetical protein BoklE_03576 [Burkholderia oklahomensis EO147] Length = 262 Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L +AV+ DE+ + K ++ + F + + ++ F + LN Sbjct: 114 ELDLAVQYG---DEVGDAQRRSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGRALN 167 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D TNVL+F + + D+VL ++E EA GK H HL++ Sbjct: 168 NSYRHKDYATNVLTFAYGEEPDG----VTVADLVLCCPVVEKEAREQGKTLVAHYAHLLV 223 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH D+DA ME LE IL LG +PY Sbjct: 224 HGALHAQGYDHERGDEDAAEMEALEIDILAKLGFPNPYR 262 >gi|115352799|ref|YP_774638.1| unkown domain/putative metalloprotease fusion protein [Burkholderia ambifaria AMMD] gi|115282787|gb|ABI88304.1| protein of unknown function UPF0054 [Burkholderia ambifaria AMMD] Length = 261 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 49/134 (36%), Positives = 68/134 (50%), Gaps = 8/134 (5%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 K ++ I F + +L++ F TLN YR D PTNVL+F Sbjct: 135 RKLIAEWIEPALF---SSAQLTVRFVGEEEGRTLNDGYRHKDYPTNVLTFAYDPLPDG-- 189 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLE 155 ++GD+VL ++E EA GK H HL++HG LH GYDH ++DA ME LE Sbjct: 190 --TVIGDLVLCCPVVEKEAQEQGKPLAAHYAHLLVHGALHAQGYDHETSEEDAAEMEALE 247 Query: 156 RSILEDLGINDPYE 169 +IL LG +PY+ Sbjct: 248 VAILAKLGFPNPYQ 261 >gi|27363747|ref|NP_759275.1| metal-binding heat shock protein [Vibrio vulnificus CMCP6] gi|29428187|sp|Q8DFE6|RRMF_VIBVU RecName: Full=Probable rRNA maturation factor gi|27359863|gb|AAO08802.1| predicted metal-dependent hydrolase [Vibrio vulnificus CMCP6] Length = 154 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVE+ + + + K + + E+++ DS Sbjct: 3 IELDLQLAVED---QNGLPSAQDFQTWLDKTIPPFQPQ--------AEVTIRIVDSQESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN +YRG DKPTNVLSFP + G +LGD+V+ +++E EA K H H Sbjct: 52 QLNHDYRGKDKPTNVLSFPFE--APPGMEMDLLGDLVICRQVVEQEAIDQDKPLMAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGFTDPYLAE 152 >gi|260767224|ref|ZP_05876165.1| predicted metal-dependent hydrolase [Vibrio furnissii CIP 102972] gi|260617732|gb|EEX42910.1| predicted metal-dependent hydrolase [Vibrio furnissii CIP 102972] gi|315180849|gb|ADT87763.1| hypothetical protein vfu_A02642 [Vibrio furnissii NCTC 11218] Length = 154 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 11/162 (6%) Query: 11 LDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + +++ ++ A D + R A+ + E+++ D Sbjct: 1 MSIELDLQLAAASEDGLPTREQFATWLQTAIVPFQPQ--------AEVTIRIVDEPESHQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN EYRG DK TNVLSFP + G +LGD+V+ +++E EA K H H+ Sbjct: 53 LNLEYRGKDKSTNVLSFPFE--APPGIEMDLLGDLVICRQVVEREAVEQNKPLLAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQTMGFEDPYLAE 152 >gi|87119368|ref|ZP_01075266.1| hypothetical protein MED121_13900 [Marinomonas sp. MED121] gi|86165759|gb|EAQ67026.1| hypothetical protein MED121_13900 [Marinomonas sp. MED121] Length = 154 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 57/166 (34%), Positives = 83/166 (50%), Gaps = 15/166 (9%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A ++ E + + EL++ D Sbjct: 1 MDNLDLDLQLASQDTKGLPSEADFMQWIQPAL------------PQNDTCFELTVRIVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + LN +YRG DK TNVLSFP DG +LGD+V+ +++E EA K+ + Sbjct: 49 EESQNLNHQYRGKDKSTNVLSFPFEV--PDGIELPLLGDLVICRQVVEKEAVEQNKKLFH 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 H H++IHG LHL G+DH+ + DA ME LE SIL L I +PY + Sbjct: 107 HWAHMVIHGTLHLRGFDHIKEDDAQEMESLEISILGQLDIPNPYLI 152 >gi|304320424|ref|YP_003854067.1| hypothetical protein PB2503_04252 [Parvularcula bermudensis HTCC2503] gi|303299326|gb|ADM08925.1| hypothetical protein PB2503_04252 [Parvularcula bermudensis HTCC2503] Length = 158 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 58/164 (35%), Positives = 81/164 (49%), Gaps = 12/164 (7%) Query: 10 RLDLQIAVENALWGDEI--HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + +++ W + L C + + + ++L TD + Sbjct: 1 MITVELQTVCPDWPQDQGHPLAERCAAILGAEMPEVSGV----------IALRLTDDTEL 50 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 + LN +RG D PTNVLSFP S+ L LGDI +AY + EA + HL Sbjct: 51 QALNKSFRGKDTPTNVLSFPADPFSTPPGEDLFLGDIAIAYGVCAREAEARAFPLDRHLA 110 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HLI+HGFLHLLGYDH D DA VME LE ++++ LG +PY D Sbjct: 111 HLILHGFLHLLGYDHQSDADAAVMEDLEATLMDRLGYGNPYAGD 154 >gi|145558836|sp|Q39D49|RRMF_BURS3 RecName: Full=Probable rRNA maturation factor Length = 172 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 59/162 (36%), Positives = 79/162 (48%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ I F +L++ F Sbjct: 23 PELDLSV-----QYGDEITSDVRKTLPKRKLIAEWIEPALFAS---AQLTVRFVGEEEGR 74 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 TLN YR D PTNVL+F A ++GD+VL ++E EA+ GK H H Sbjct: 75 TLNAGYRHKDYPTNVLTFAYDAAPDG----TVIGDLVLCCPVVEKEAHEQGKPLTAHYAH 130 Query: 129 LIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH D+DA ME LE IL LG +PY+ Sbjct: 131 LLVHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYQ 172 >gi|262165202|ref|ZP_06032939.1| predicted metal-dependent hydrolase [Vibrio mimicus VM223] gi|262024918|gb|EEY43586.1| predicted metal-dependent hydrolase [Vibrio mimicus VM223] Length = 154 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVE+ + + ++ + E+++ D Sbjct: 3 IELDLQLAVEDEN---GLPTEADFAQWLTRTITPFQPQ--------AEVTIRIVDEEESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YRG DKPTNVLSFP + G +LGD+V+ +++E EA K + H H Sbjct: 52 ALNLNYRGKDKPTNVLSFPFE--APPGMEMDLLGDLVICRQVVEHEAIEQNKPLQAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAE 152 >gi|229525570|ref|ZP_04414975.1| hypothetical protein VCA_003202 [Vibrio cholerae bv. albensis VL426] gi|229339151|gb|EEO04168.1| hypothetical protein VCA_003202 [Vibrio cholerae bv. albensis VL426] Length = 154 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 60/163 (36%), Positives = 87/163 (53%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN E L + E + + + E+++ D Sbjct: 3 IELDLQLAVEN-----EHGLPSEAEFAL------WLIRTITPFQPQAEVTIRIVDEAESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YRG DKPTNVLSFP + G +LGD+V+ +++E EA K + H H Sbjct: 52 ALNLNYRGKDKPTNVLSFPFE--TPPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAE 152 >gi|254285630|ref|ZP_04960594.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|150424492|gb|EDN16429.1| conserved hypothetical protein [Vibrio cholerae AM-19226] Length = 154 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN E L + E +++ + E+++ D Sbjct: 3 IELDLQLAVEN-----EHGLPSEAEFAL------WLTRTITPFQTQAEVTIRIVDEAESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YRG DKPTNVLSFP + G + +LGD+V+ +++E EA K + H H Sbjct: 52 ALNLNYRGKDKPTNVLSFPFE--APPGMAMDLLGDLVICRQVVEREAIEQNKPLQAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++D+G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQDMGFTDPYLAE 152 >gi|90416862|ref|ZP_01224791.1| hypothetical protein GB2207_06363 [marine gamma proteobacterium HTCC2207] gi|90331209|gb|EAS46453.1| hypothetical protein GB2207_06363 [marine gamma proteobacterium HTCC2207] Length = 164 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 14/160 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+Q A + DE ++ + + ELS+ D Sbjct: 5 IDIQKACASEDSPDEDSIKRWLGAAIR------------DERDECELSIRIVDEQESADF 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG TNVLSFP + + +LGD+V+ ++ EA+ K + H H++ Sbjct: 53 NQRYRGKSGATNVLSFPFDAVTPEPLP--ILGDLVICAPVVIREASDQQKTVDAHWAHIV 110 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 IHG LHLLGYDH++D+DA MEGLE I+ L PY + Sbjct: 111 IHGVLHLLGYDHIEDQDAEQMEGLETEIMLKLDFPAPYRI 150 >gi|51595458|ref|YP_069649.1| metalloprotease [Yersinia pseudotuberculosis IP 32953] gi|153949147|ref|YP_001401879.1| metalloprotease [Yersinia pseudotuberculosis IP 31758] gi|186894489|ref|YP_001871601.1| putative metalloprotease [Yersinia pseudotuberculosis PB1/+] gi|59799101|sp|Q66DD5|RRMF_YERPS RecName: Full=Probable rRNA maturation factor gi|166988546|sp|A7FKV1|RRMF_YERP3 RecName: Full=Probable rRNA maturation factor gi|238691434|sp|B2K894|RRMF_YERPB RecName: Full=Probable rRNA maturation factor gi|51588740|emb|CAH20351.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|152960642|gb|ABS48103.1| conserved hypothetical protein TIGR00043 [Yersinia pseudotuberculosis IP 31758] gi|186697515|gb|ACC88144.1| protein of unknown function UPF0054 [Yersinia pseudotuberculosis PB1/+] Length = 157 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQIA ++ E + E V + + + E+++ D Sbjct: 1 MSQVILDLQIACADSQGLPTEGDFQRWLEAVL------------PLFQPVSEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DK TNVLSFP + +LGD+++ +++E EA K Sbjct: 49 AESHDLNLTYRGKDKSTNVLSFPFE--APPEIELPLLGDLIICRQVVEKEAIEQEKALLA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH+DD +A ME +E I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIDDDEAEEMELIETEIMHGLGYPDPYISE 153 >gi|217979026|ref|YP_002363173.1| protein of unknown function UPF0054 [Methylocella silvestris BL2] gi|254801577|sp|B8ETG9|RRMF_METSB RecName: Full=Probable rRNA maturation factor gi|217504402|gb|ACK51811.1| protein of unknown function UPF0054 [Methylocella silvestris BL2] Length = 176 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 74/157 (47%), Positives = 94/157 (59%), Gaps = 7/157 (4%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + IAVE W TL E V + +S +K E+S+VF D I LN Sbjct: 5 IDIAVEAEAWESFEDPATLAETVIVQTISQSGAKLA----AEAEISIVFCDDAFIADLNR 60 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 ++RG+DKPTNVLSFP+ + +LGDIV+AYE E EA GK F +H+ HLI H Sbjct: 61 KWRGVDKPTNVLSFPSGG---PIAVTPVLGDIVIAYETTEREAQEAGKPFRDHVAHLIAH 117 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 GFLHL+GYDH+ DA ME LERS+L LGI+DPY+ Sbjct: 118 GFLHLIGYDHLAAADAEAMEALERSVLARLGIDDPYQ 154 >gi|304413111|ref|ZP_07394584.1| hypothetical protein REG_0098 [Candidatus Regiella insecticola LSR1] gi|304283954|gb|EFL92347.1| hypothetical protein REG_0098 [Candidatus Regiella insecticola LSR1] Length = 177 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 81/159 (50%), Gaps = 13/159 (8%) Query: 11 LDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQI N E + + E + + F + E+++ D Sbjct: 29 LDLQIVCTHNKKLPTEANFNSWLEAI----------QVKFQSLSEAEMTIRLVDEAESRQ 78 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LNF YR DKPTNVLSFP+ + + LGD+V+ +++E EA K H H+ Sbjct: 79 LNFIYRDKDKPTNVLSFPSTL--PEEINLPWLGDLVICRQVVEREAVEQNKTLLAHWAHM 136 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH+ D++A ME LE IL+ LG D Y Sbjct: 137 VVHGTLHLLGYDHITDEEAQEMESLETDILQTLGYPDAY 175 >gi|315127053|ref|YP_004069056.1| hypothetical protein PSM_A1982 [Pseudoalteromonas sp. SM9913] gi|315015567|gb|ADT68905.1| hypothetical protein PSM_A1982 [Pseudoalteromonas sp. SM9913] Length = 152 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 58/162 (35%), Positives = 86/162 (53%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA E + V ++ + EL++V +D + + Sbjct: 4 ELDLQIACEFDNLPSLEQFAMWADKVLSQ------------YRDESELTIVISDEAQSQQ 51 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG +KPTNVLSF F + G ++GD+++ I+ EA K F +H H+ Sbjct: 52 LNNDYRGKNKPTNVLSF--EFEAPPGIDIPLVGDLIICPAIVLAEAQEQEKSFHDHFAHM 109 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLG+DH+ +DA ME +E+ +L +L I DPY D Sbjct: 110 VIHGCLHLLGFDHIKSEDALEMESIEKQLLAELNIADPYRDD 151 >gi|313201801|ref|YP_004040459.1| hypothetical protein MPQ_2072 [Methylovorus sp. MP688] gi|312441117|gb|ADQ85223.1| conserved hypothetical protein [Methylovorus sp. MP688] Length = 150 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 76/161 (47%), Gaps = 21/161 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+Q+A E A + +F K + EL+L D L Sbjct: 1 MDVQVASEAANIP--------ADKLFRKWARATLRV-------DTELALRIVDEDEGRAL 45 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YRG D TNVL+FP ++GDI+L ++ EA GK E H HL Sbjct: 46 NRDYRGKDYATNVLTFPLTEE------PHLMGDIILCAPVVAREAAEQGKPIEAHYAHLT 99 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHL GYDH + A +MEGLE I+ LG +DPY + Sbjct: 100 VHGVLHLHGYDHETEPQAELMEGLETEIVTKLGYSDPYAAE 140 >gi|170718769|ref|YP_001783953.1| hypothetical protein HSM_0615 [Haemophilus somnus 2336] gi|238688012|sp|B0US54|RRMF_HAES2 RecName: Full=Probable rRNA maturation factor gi|168826898|gb|ACA32269.1| protein of unknown function UPF0054 [Haemophilus somnus 2336] Length = 154 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 85/166 (51%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + +DLQIA E+A + ++ A+ + + E+++ D Sbjct: 1 MKNVIIDLQIASEDAT---NLPSVEQIQLWANAAIRA--------ENSQPEMTVRIVDEE 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP D ++GD+V+ +++E EA K H Sbjct: 50 ESHHLNLTYRGKDKPTNVLSFPFE--CPDEIELPLIGDLVICRQVVEREATEQEKPLMAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+I+HG LHLLGYDH++D +A ME LE I+ LG DPY ++ Sbjct: 108 WAHMIVHGSLHLLGYDHIEDDEAEEMERLETEIMLSLGFTDPYIIE 153 >gi|15640976|ref|NP_230607.1| putative metalloprotease [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591013|ref|ZP_01678330.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|153820004|ref|ZP_01972671.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153823312|ref|ZP_01975979.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227081134|ref|YP_002809685.1| hypothetical protein VCM66_0916 [Vibrio cholerae M66-2] gi|229505440|ref|ZP_04394950.1| hypothetical protein VCF_000648 [Vibrio cholerae BX 330286] gi|229510890|ref|ZP_04400369.1| hypothetical protein VCE_002297 [Vibrio cholerae B33] gi|229518011|ref|ZP_04407455.1| hypothetical protein VCC_002035 [Vibrio cholerae RC9] gi|229608459|ref|YP_002879107.1| metalloprotease [Vibrio cholerae MJ-1236] gi|254848091|ref|ZP_05237441.1| metalloprotease [Vibrio cholerae MO10] gi|255744743|ref|ZP_05418694.1| predicted metal-dependent hydrolase [Vibrio cholera CIRS 101] gi|262161123|ref|ZP_06030234.1| predicted metal-dependent hydrolase [Vibrio cholerae INDRE 91/1] gi|298498924|ref|ZP_07008731.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|26006919|sp|Q9KTE2|RRMF_VIBCH RecName: Full=Probable rRNA maturation factor gi|254807269|sp|C3LTK8|RRMF_VIBCM RecName: Full=Probable rRNA maturation factor gi|9655419|gb|AAF94122.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547123|gb|EAX57255.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|126509455|gb|EAZ72049.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126519176|gb|EAZ76399.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227009022|gb|ACP05234.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|229344726|gb|EEO09700.1| hypothetical protein VCC_002035 [Vibrio cholerae RC9] gi|229350855|gb|EEO15796.1| hypothetical protein VCE_002297 [Vibrio cholerae B33] gi|229357663|gb|EEO22580.1| hypothetical protein VCF_000648 [Vibrio cholerae BX 330286] gi|229371114|gb|ACQ61537.1| hypothetical protein VCD_003377 [Vibrio cholerae MJ-1236] gi|254843796|gb|EET22210.1| metalloprotease [Vibrio cholerae MO10] gi|255737774|gb|EET93168.1| predicted metal-dependent hydrolase [Vibrio cholera CIRS 101] gi|262028873|gb|EEY47526.1| predicted metal-dependent hydrolase [Vibrio cholerae INDRE 91/1] gi|297543257|gb|EFH79307.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 154 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 60/163 (36%), Positives = 88/163 (53%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN E L + E +++ + E+++ D Sbjct: 3 IELDLQLAVEN-----EHGLPSEAEFAL------WLTRTITPFQAQAEVTVRIVDEAESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YRG DKPTNVLSFP + G +LGD+V+ +++E EA K + H H Sbjct: 52 ALNLNYRGKDKPTNVLSFPFE--APSGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAE 152 >gi|254482458|ref|ZP_05095697.1| conserved hypothetical protein TIGR00043, putative [marine gamma proteobacterium HTCC2148] gi|214037149|gb|EEB77817.1| conserved hypothetical protein TIGR00043, putative [marine gamma proteobacterium HTCC2148] Length = 159 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 16/164 (9%) Query: 11 LDLQIAVEN---ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 ++LQ+ ++N DE +R V + + E+S+ D + Sbjct: 1 MNLQVDIQNASGESAPDEEDIRGWISTVLS-----------GRRSADTEISVRLVDIEEM 49 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN YR PTNVLSFP+ +LGDIV+ ++ EA K + H Sbjct: 50 TKLNQGYRDKSGPTNVLSFPSDLPP--ELDLPLLGDIVICAPVVCDEAKSQQKILQAHWA 107 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+ +HG LHLLGYDH+++ +A ME LE IL L PY+ + Sbjct: 108 HMTVHGTLHLLGYDHIEEDEALAMEALETEILTSLNYPCPYQGE 151 >gi|218658441|ref|ZP_03514371.1| hypothetical protein RetlI_01597 [Rhizobium etli IE4771] Length = 127 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 62/116 (53%), Positives = 80/116 (68%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 E+SLVFTD I+ +N E+RG DK TNVLSFP MLGDI++A E +E Sbjct: 4 PPEVSLVFTDDASIQDINAEWRGKDKATNVLSFPAFPVKPGKMPGPMLGDIIIARETVER 63 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 EA+ L K ++HL HL++HGFLHLLGYDH++ +A +MEGLE IL LG++DPYE Sbjct: 64 EAHELEKSLDDHLTHLLVHGFLHLLGYDHMNSTEAEIMEGLETRILAQLGLSDPYE 119 >gi|33152458|ref|NP_873811.1| putative metalloprotease [Haemophilus ducreyi 35000HP] gi|46577397|sp|Q7VLN5|RRMF_HAEDU RecName: Full=Probable rRNA maturation factor gi|33148681|gb|AAP96200.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 158 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 85/164 (51%), Gaps = 8/164 (4%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 P +DLQIA EN+ + A++ + + EL++ D Sbjct: 2 NPIIDLQIASENSQ---GLPSAQQFSDWVKHALTY---EAQTSNIPLTELTIRIVDEAES 55 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN YRG DKPTNVLSFP +G +LGD+++ +I+E EA + H Sbjct: 56 HHLNLTYRGKDKPTNVLSFPFEV--PEGIELPLLGDLIICRQIVEKEALEQKISLDAHWA 113 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL IHG LHLLGYDH+D+ +A MEGLE I++ LG DPY + Sbjct: 114 HLTIHGTLHLLGYDHIDEHEAEQMEGLESDIMQQLGFQDPYLAE 157 >gi|262402696|ref|ZP_06079257.1| predicted metal-dependent hydrolase [Vibrio sp. RC586] gi|262351478|gb|EEZ00611.1| predicted metal-dependent hydrolase [Vibrio sp. RC586] Length = 154 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 57/163 (34%), Positives = 85/163 (52%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN + + ++ + E+++ D Sbjct: 3 IELDLQLAVENEN---GLPTEADFAQWLTRTITPFQPQ--------AEVTIRIVDEKESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YRG DKPTNVLSFP + G +LGD+V+ +++E EA K + H H Sbjct: 52 MLNLNYRGKDKPTNVLSFPFE--APPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAE 152 >gi|310815236|ref|YP_003963200.1| Putative metalloprotease [Ketogulonicigenium vulgare Y25] gi|308753971|gb|ADO41900.1| Putative metalloprotease [Ketogulonicigenium vulgare Y25] Length = 165 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 17/170 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ +E W ++ + +E+SL+ + RI L Sbjct: 1 MNVDCLIEETRWHA-------VDLDALAVKAAAGVAARLQLPADLEISLLACNDARIAEL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFAS----------SDGCSSLMLGDIVLAYEIIEIEANVLGK 120 N ++RG KPTNVLS+P+ +GDI +A+E EA+ GK Sbjct: 54 NADFRGKPKPTNVLSWPSEERGARTAGDMPMLPQAGDDPEIGDIAIAFETCAREADEGGK 113 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 + H+ HL++HG LHLLG+DH D+DA +MEGLE IL +GI DPY Sbjct: 114 ALDVHVTHLLVHGCLHLLGFDHERDEDAALMEGLETEILGKMGIADPYSD 163 >gi|332306416|ref|YP_004434267.1| hypothetical protein Glaag_2054 [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173745|gb|AEE22999.1| protein of unknown function UPF0054 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 152 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 56/159 (35%), Positives = 81/159 (50%), Gaps = 13/159 (8%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 DLQIA + + + V A + + E+++ D + LN Sbjct: 6 DLQIASDALNLPKTDDFQRWLDAVLAN-----------QQLSNQEITVRIVDKEESQDLN 54 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YRG DKPTNVLSFP + G S +LGD+V+ ++ EA K +H H+I+ Sbjct: 55 HTYRGKDKPTNVLSFPFE--APPGLSLNLLGDLVVCASVVADEAKEQHKALAHHWAHMIV 112 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HG LHLLG+DH+ D +A ME +E IL+ I+DPY+ Sbjct: 113 HGALHLLGFDHITDDEAQQMEAVEVIILKQFSIDDPYQD 151 >gi|260774883|ref|ZP_05883784.1| predicted metal-dependent hydrolase [Vibrio coralliilyticus ATCC BAA-450] gi|260609138|gb|EEX35296.1| predicted metal-dependent hydrolase [Vibrio coralliilyticus ATCC BAA-450] Length = 156 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 57/163 (34%), Positives = 85/163 (52%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVE+ + + AV+ + E+++ D Sbjct: 3 IELDLQLAVEDE---KGLPSSEDVHLWLTSAVAKFQPQ--------AEVTVRIVDEQESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN +YRG DKPTNVLSFP + G +LGD+++ +++E EA+ K H H Sbjct: 52 QLNHDYRGKDKPTNVLSFPFE--APPGIEMDLLGDLIICRQVVEQEADQQSKPLMAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I+ +G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMLGMGFEDPYIAE 152 >gi|254461073|ref|ZP_05074489.1| conserved hypothetical protein TIGR00043 [Rhodobacterales bacterium HTCC2083] gi|206677662|gb|EDZ42149.1| conserved hypothetical protein TIGR00043 [Rhodobacteraceae bacterium HTCC2083] Length = 162 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 81/163 (49%), Gaps = 16/163 (9%) Query: 16 AVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYR 75 +E++ W + L TL E K ++ L + + E++++ D RI LN E+R Sbjct: 6 IIEDSRWQT-VDLATLAETAARKTLTQL-----DLDPTVFEIAILACDDTRIAELNTEFR 59 Query: 76 GIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 PTNVLS+P+ LGDI ++Y+ EA K +H Sbjct: 60 DKPTPTNVLSWPSDERASDIDGARPEKPVLPMDAELGDIAISYDTCAREAQSANKPLTDH 119 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HLIIHG LHLLGYDH+ D DA +ME E IL LG++ PY Sbjct: 120 TTHLIIHGVLHLLGYDHIRDLDATLMEQTEVLILGTLGVDTPY 162 >gi|71276466|ref|ZP_00652742.1| Protein of unknown function UPF0054 [Xylella fastidiosa Dixon] gi|71898875|ref|ZP_00681042.1| Protein of unknown function UPF0054 [Xylella fastidiosa Ann-1] gi|71162782|gb|EAO12508.1| Protein of unknown function UPF0054 [Xylella fastidiosa Dixon] gi|71731287|gb|EAO33351.1| Protein of unknown function UPF0054 [Xylella fastidiosa Ann-1] Length = 213 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 75/161 (46%), Gaps = 10/161 (6%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L + + L ++ A + I K +L++ D LN+ Sbjct: 60 LNVGISYGLPRTKLPAAVSFRKWVAATLQGRIRK--------ADLAIRIVDEKEGRALNY 111 Query: 73 EYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 YR D TNVLSFP +LGDIV+ +I EA GK H HL Sbjct: 112 HYRNKDYATNVLSFPAQLPEPFPKALKIPLLGDIVMCAPVIAREATEQGKSLSAHYAHLT 171 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLG++H D ++A ME LER IL +LGI+DPY + Sbjct: 172 VHGTLHLLGWNHEDHQEADAMEQLEREILANLGISDPYLGE 212 >gi|332285329|ref|YP_004417240.1| hypothetical protein PT7_2076 [Pusillimonas sp. T7-7] gi|330429282|gb|AEC20616.1| hypothetical protein PT7_2076 [Pusillimonas sp. T7-7] Length = 164 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 11/162 (6%) Query: 11 LDLQIAV---ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 L +Q A+ E W LR + + + G + L+L D+ Sbjct: 7 LTVQYAIPAAELPRWR----LRRWVQHALSGVLKAEAEAGAPGRFRAAALALRLVDADEG 62 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN E+R D TNVL+F + GDIVL ++ EA K +H Sbjct: 63 RRLNREFRHKDYATNVLTFEYGIDPEG----VASGDIVLCLPVLYREAAEQKKSILDHAA 118 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL +HG LH LGYDH++ ++A ME LE +IL +G DPY+ Sbjct: 119 HLTVHGVLHALGYDHIEPEEATDMEELETAILAKMGFADPYQ 160 >gi|113460492|ref|YP_718555.1| metal-dependent hydrolase [Haemophilus somnus 129PT] gi|123327121|sp|Q0I1E6|RRMF_HAES1 RecName: Full=Probable rRNA maturation factor gi|112822535|gb|ABI24624.1| conserved hypothetical protein [Haemophilus somnus 129PT] Length = 154 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 57/166 (34%), Positives = 84/166 (50%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + +DLQIA E+ + ++ A+ + + E+++ D Sbjct: 1 MKNVIIDLQIASED---VTNLPSVEQIQLWANAAIRA--------ENSQPEMTVRIVDEE 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP D ++GD+V+ +++E EA K H Sbjct: 50 ESHHLNLTYRGKDKPTNVLSFPFE--CPDEIELPLIGDLVICRQVVEREATEQEKPLMAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+I+HG LHLLGYDH++D +A ME LE I+ LG DPY ++ Sbjct: 108 WAHMIVHGSLHLLGYDHIEDDEAEEMERLETEIMLSLGFTDPYIIE 153 >gi|71902417|ref|ZP_00684373.1| Protein of unknown function UPF0054 [Xylella fastidiosa Ann-1] gi|71727855|gb|EAO30096.1| Protein of unknown function UPF0054 [Xylella fastidiosa Ann-1] Length = 213 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 75/161 (46%), Gaps = 10/161 (6%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L + + L ++ A + I K +L++ D LN+ Sbjct: 60 LNVGISYGLPRTKLPAAVSFRKWVAATLQGRIRK--------ADLAIRIVDEKEGRALNY 111 Query: 73 EYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 YR D TNVLSFP +LGDIV+ +I EA GK H HL Sbjct: 112 HYRNKDYATNVLSFPAQLPEPFPKALKIPLLGDIVMCAPVIAREATEQGKSLSAHYAHLT 171 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLG++H D ++A ME LER IL +LGI+DPY + Sbjct: 172 VHGTLHLLGWNHEDHQEADAMEQLEREILANLGISDPYLGE 212 >gi|299067910|emb|CBJ39124.1| Putative metalloprotease [Ralstonia solanacearum CMR15] Length = 255 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 57/159 (35%), Positives = 74/159 (46%), Gaps = 10/159 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L L + V++ D + + K + I+ F +L++ F D T Sbjct: 104 MLTLDLTVQHG---DALKAAARKALPKHKDIEAWIAPALFAD---AQLNVRFVDEEEGRT 157 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG D TNVL+F A D + DIVL ++E EA GK H HL Sbjct: 158 LNHTYRGKDYATNVLTFSYAETEDD----PVAADIVLCCPVVEKEAKDQGKPLRAHYAHL 213 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 I+HG LH GYDH D A MEG+E +L LG DPY Sbjct: 214 IVHGALHAQGYDHEDPAQAEEMEGIETEVLAGLGFPDPY 252 >gi|323499964|ref|ZP_08104922.1| metal-binding heat shock protein [Vibrio sinaloensis DSM 21326] gi|323314981|gb|EGA68034.1| metal-binding heat shock protein [Vibrio sinaloensis DSM 21326] Length = 155 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 87/163 (53%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVE+ + + AV+ + E+++ D Sbjct: 3 IELDLQLAVEDE---SGLPTFDDIHLWLNSAVAKFQPQ--------AEVTVRLVDEQESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LNF+YRG DKPTNVLSFP + G +LGD+++ +++E EA K H H Sbjct: 52 QLNFDYRGKDKPTNVLSFPFE--APPGIEMDLLGDLIICRQVVEREAIEQQKPLMAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFLDPYLAE 152 >gi|126727645|ref|ZP_01743477.1| hypothetical protein RB2150_15740 [Rhodobacterales bacterium HTCC2150] gi|126703061|gb|EBA02162.1| hypothetical protein RB2150_15740 [Rhodobacterales bacterium HTCC2150] Length = 188 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 20/181 (11%) Query: 1 MSVK-KVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSL 59 M++ ++ P L + +E+ W + + +++L ++ + +S+ Sbjct: 1 MTLTVPLDNPML-IDSLIEDDRW-RAADFDDHARIAASATLTHL-----GLRVDDYLISV 53 Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLA 107 + D +I TLN ++RG PTNVLS+P+ LGDI ++ Sbjct: 54 LACDDAKIATLNADFRGKPTPTNVLSWPSEERGVEVAGDTPELPDIGQEIPYELGDIAIS 113 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 ++ EA V FE H++HL+IHG LHLLGYDH+ DKDA +MEG+E +L LG+ DP Sbjct: 114 FDTCLQEAKVSNTPFEQHVLHLMIHGTLHLLGYDHIFDKDAALMEGIETEVLATLGVPDP 173 Query: 168 Y 168 Y Sbjct: 174 Y 174 >gi|109898525|ref|YP_661780.1| hypothetical protein Patl_2208 [Pseudoalteromonas atlantica T6c] gi|123064566|sp|Q15TR2|RRMF_PSEA6 RecName: Full=Probable rRNA maturation factor gi|109700806|gb|ABG40726.1| protein of unknown function UPF0054 [Pseudoalteromonas atlantica T6c] Length = 152 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 57/159 (35%), Positives = 86/159 (54%), Gaps = 13/159 (8%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 DLQ+A + A + V A + + EL++ ++ + LN Sbjct: 6 DLQVASDAANLPSADDFQRWLNAVLAH-----------QQLSEHELTVRIVETQESQELN 54 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YRG DKPTNVLSFP + G S +LGD+V+ +++ EA+ K+ +H H+I+ Sbjct: 55 LTYRGKDKPTNVLSFPFE--APPGLSLNLLGDLVVCADVVAHEADEQHKKLHHHWAHMIV 112 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HG LHLLG+DH++D +A ME LE IL+ I+DPY+ Sbjct: 113 HGALHLLGFDHINDDEAKEMEALEVDILKQFSIDDPYQD 151 >gi|258511950|ref|YP_003185384.1| hypothetical protein Aaci_1983 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478676|gb|ACV58995.1| protein of unknown function UPF0054 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 157 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 9/161 (5%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + RL + + E W + F V ++ E+S++F D I Sbjct: 1 MNRLSIDVTCE-VEWP--LPPPHGDAQAF---VERVLEAAAERIGVQGEVSVLFVDDDAI 54 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFAS---SDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YR +D+PT+VLSFP MLGDIV++ + +A G E Sbjct: 55 HELNRTYRQVDRPTDVLSFPMNEGEALADPDDVEPMLGDIVVSVDRAREQAEAYGHSLER 114 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + L++HGFLHL GYDH D+ M GL+ IL+ +G+ Sbjct: 115 EVAFLLVHGFLHLNGYDHEDEAGEREMFGLQEEILQGIGLA 155 >gi|153835655|ref|ZP_01988322.1| conserved hypothetical protein [Vibrio harveyi HY01] gi|156973537|ref|YP_001444444.1| putative metalloprotease [Vibrio harveyi ATCC BAA-1116] gi|269961559|ref|ZP_06175921.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|166228922|sp|A7N1G7|RRMF_VIBHB RecName: Full=Probable rRNA maturation factor gi|148867723|gb|EDL66985.1| conserved hypothetical protein [Vibrio harveyi HY01] gi|156525131|gb|ABU70217.1| hypothetical protein VIBHAR_01228 [Vibrio harveyi ATCC BAA-1116] gi|269833600|gb|EEZ87697.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 154 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 59/163 (36%), Positives = 86/163 (52%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN + + ++ K + + + EL++ D Sbjct: 3 IELDLQLAVENE---EGLPSEQDFQLWLDKTI--------PLFQPQAELTIRIVDEQESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYRG DKPTNVLSFP G +LGD+++ +++E EA K H H Sbjct: 52 ELNHEYRGKDKPTNVLSFPFEV--PPGMEMDLLGDLIICRQVVEKEAVEQNKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGYEDPYIAE 152 >gi|50593431|gb|AAT79462.1| putative metal-dependent hydrolase [Agrobacterium luteum] Length = 186 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 63/171 (36%), Positives = 88/171 (51%), Gaps = 7/171 (4%) Query: 4 KKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTD 63 K + L ++ + WG E L A++ + +E+S+ +D Sbjct: 13 KPMKAKMLQTELTA-SPQWGTEPEWPDLAARAAKAAIAASSRADLMSRNFDIEVSVKLSD 71 Query: 64 SHRIETLNFEYRGIDKPTNVLSFP------TAFASSDGCSSLMLGDIVLAYEIIEIEANV 117 + ++TLN YRG DKPTNVLSFP ++ +LGDI+LAYE EA Sbjct: 72 NAEVQTLNKAYRGKDKPTNVLSFPQIQPDLLDTLANTDDGEALLGDIILAYETCRDEAVA 131 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 F +H+ HLI+HG LHLLGYDH ++ DA VME E + L LGI +PY Sbjct: 132 KDISFSSHITHLIVHGSLHLLGYDHENEVDAGVMENCEINALATLGIANPY 182 >gi|59799019|sp|Q63X65|RRMF_BURPS RecName: Full=Probable rRNA maturation factor Length = 184 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L +AV+ DEI + K ++ + F + + ++ F + LN Sbjct: 36 ELDLAVQYG---DEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGRALN 89 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D TNVL+F + + D+VL ++E EA GK H HL++ Sbjct: 90 HSYRHKDYATNVLTFAYGEEPDG----VTVADLVLCCPVVEKEAREQGKTLVAHYAHLLV 145 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 146 HGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 184 >gi|91228824|ref|ZP_01262731.1| hypothetical protein V12G01_00175 [Vibrio alginolyticus 12G01] gi|269965465|ref|ZP_06179584.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|91187629|gb|EAS73954.1| hypothetical protein V12G01_00175 [Vibrio alginolyticus 12G01] gi|269829944|gb|EEZ84174.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 154 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN + + + ++ K + + + E+++ D Sbjct: 3 IELDLQLAVENE---EGLPSQQDFQLWLDKTI--------PLFQPQAEVTIRIVDEQESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 TLN EYRG DKPTNVLSFP + G +LGD+++ +++E EA K H H Sbjct: 52 TLNHEYRGKDKPTNVLSFPFE--APPGMEIDLLGDLIICRQVVEKEAVEQSKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGYEDPYIAE 152 >gi|257092863|ref|YP_003166504.1| hypothetical protein CAP2UW1_1247 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045387|gb|ACV34575.1| protein of unknown function UPF0054 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 144 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 51/155 (32%), Positives = 72/155 (46%), Gaps = 14/155 (9%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 + A +E+ + A+ + ++++ F D+ LN +YR Sbjct: 2 QYACLANELPQKPQVRTWARAAID-------VDGKRRGQITVRFVDADEARRLNRDYRHR 54 Query: 78 DKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 D TNVLSFP A ++ GD+VL ++ EA GK E H HLI+HG LHL Sbjct: 55 DYATNVLSFPYARE------PVVCGDLVLCAPVVAREAAEQGKPLEAHYAHLIVHGLLHL 108 Query: 138 LGYDHVDDK-DACVMEGLERSILEDLGINDPYEVD 171 GYDH A ME ER +L LG DPY ++ Sbjct: 109 QGYDHETSARQAAEMESRERRVLHALGYPDPYAME 143 >gi|293391337|ref|ZP_06635671.1| putative metalloprotease in flp 5' region [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951871|gb|EFE01990.1| putative metalloprotease in flp 5' region [Aggregatibacter actinomycetemcomitans D7S-1] Length = 154 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 79/167 (47%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + +DLQIA + + + + +E+++ D Sbjct: 1 MGKMIIDLQIASADESGLPTAAQIEQWATAAVQ------------PQSGEIEMTVRIVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG D+PTNVLSFP D +LGD+V+ +++E EA K Sbjct: 49 TESHALNLNYRGKDRPTNVLSFPFE--CPDEVELPLLGDLVICRQVVEREAQEQEKPLMA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMESLETQIMIGLGFVDPYLSE 153 >gi|225025308|ref|ZP_03714500.1| hypothetical protein EIKCOROL_02206 [Eikenella corrodens ATCC 23834] gi|224941926|gb|EEG23135.1| hypothetical protein EIKCOROL_02206 [Eikenella corrodens ATCC 23834] Length = 175 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 67/145 (46%), Gaps = 10/145 (6%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E F + + Y E+ L+ D N +YR D TNVLSF Sbjct: 33 EAQFRRWAWQAVKSQY----RRAEIGLLLLDEETARAYNRDYRQKDYATNVLSFALDEGE 88 Query: 93 S------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 G ++ GD+V+ +++ EA GK E H HL +HG LHL+G+DH++ Sbjct: 89 QAALAGLSGSLPVLRGDLVICPQVVVREAAEQGKILEAHFAHLTLHGVLHLMGHDHIEPD 148 Query: 147 DACVMEGLERSILEDLGINDPYEVD 171 +A ME LE ++ LG +PY D Sbjct: 149 EAEAMEALEIRLMNQLGYPNPYAQD 173 >gi|28199652|ref|NP_779966.1| putative metalloprotease [Xylella fastidiosa Temecula1] gi|170731019|ref|YP_001776452.1| putative metalloprotease [Xylella fastidiosa M12] gi|182682398|ref|YP_001830558.1| putative metalloprotease [Xylella fastidiosa M23] gi|32130366|sp|Q87AP2|RRMF_XYLFT RecName: Full=Probable rRNA maturation factor gi|238687948|sp|B0U4P3|RRMF_XYLFM RecName: Full=Probable rRNA maturation factor gi|238691098|sp|B2I8U3|RRMF_XYLF2 RecName: Full=Probable rRNA maturation factor gi|28057767|gb|AAO29615.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] gi|167965812|gb|ACA12822.1| conserved hypothetical protein [Xylella fastidiosa M12] gi|182632508|gb|ACB93284.1| protein of unknown function UPF0054 [Xylella fastidiosa M23] gi|307578678|gb|ADN62647.1| putative metalloprotease [Xylella fastidiosa subsp. fastidiosa GB514] Length = 161 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 75/161 (46%), Gaps = 10/161 (6%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L + + L ++ A + I K +L++ D LN+ Sbjct: 8 LNVGISYGLPRTKLPAAVSFRKWVAATLQGRIRK--------ADLAIRIVDEKEGRALNY 59 Query: 73 EYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 YR D TNVLSFP +LGDIV+ +I EA GK H HL Sbjct: 60 HYRNKDYATNVLSFPAQLPEPFPKALKIPLLGDIVMCAPVIAREATEQGKSLSAHYAHLT 119 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLG++H D ++A ME LER IL +LGI+DPY + Sbjct: 120 VHGTLHLLGWNHEDHQEADAMEQLEREILANLGISDPYLGE 160 >gi|332140831|ref|YP_004426569.1| hypothetical protein MADE_1007145 [Alteromonas macleodii str. 'Deep ecotype'] gi|238693281|sp|B4S0S0|RRMF_ALTMD RecName: Full=Probable rRNA maturation factor gi|327550853|gb|AEA97571.1| hypothetical protein MADE_1007145 [Alteromonas macleodii str. 'Deep ecotype'] Length = 158 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 61/157 (38%), Positives = 90/157 (57%), Gaps = 4/157 (2%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I V+ A G+E+ + + +N + K + + E+++ FTD ++LN EY Sbjct: 5 IDVQQAFEGEEVISIDIPSPAELELWANAVLKYEGLSDQ--EVTIRFTDEAESQSLNSEY 62 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 RG KPTNVLSFP + G +LGD+V+ +I EA K+ +H H+ +HG Sbjct: 63 RGKHKPTNVLSFPFE--APPGIEINLLGDLVICAPVISREAEEQDKQVSDHYAHMTVHGL 120 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 LHL+GYDH+DD +A MEG E IL LGI++PY+ D Sbjct: 121 LHLMGYDHIDDAEAEEMEGKEIDILAQLGIDNPYDAD 157 >gi|239996132|ref|ZP_04716656.1| hypothetical protein AmacA2_16882 [Alteromonas macleodii ATCC 27126] Length = 158 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 61/160 (38%), Positives = 84/160 (52%), Gaps = 10/160 (6%) Query: 11 LDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D+Q A E + I + E+ + E+++ FTD ++ Sbjct: 5 IDVQQAFEGDEAILSAIPSPSELELWANAVLKYEGLAEQ-------EVTIRFTDEAESQS 57 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN EYRG DKPTNVLSFP + G +LGD+V+ +I EA K+ NH H+ Sbjct: 58 LNHEYRGKDKPTNVLSFPFE--APPGIEINLLGDLVICAPVISREAEEQHKDVSNHYAHM 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHL+GYDH+DD +A ME E IL LGI +PYE Sbjct: 116 TVHGLLHLMGYDHIDDAEAEEMESKEIDILAHLGIANPYE 155 >gi|262394982|ref|YP_003286836.1| putative metal-dependent hydrolase [Vibrio sp. Ex25] gi|262338576|gb|ACY52371.1| predicted metal-dependent hydrolase [Vibrio sp. Ex25] Length = 154 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN + + + ++ K + + + E+++ D Sbjct: 3 IELDLQLAVENE---EGLPSQQDFQLWLDKTI--------PLFQPQAEVTIRIVDEQESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 TLN EYRG DKPTNVLSFP + G +LGD+++ +++E EA K H H Sbjct: 52 TLNHEYRGKDKPTNVLSFPFE--APPGMEIDLLGDLIICRQVVEKEAIEQNKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGYEDPYIAE 152 >gi|218708743|ref|YP_002416364.1| putative metalloprotease [Vibrio splendidus LGP32] gi|254806592|sp|B7VKG1|RRMF_VIBSL RecName: Full=Probable rRNA maturation factor gi|218321762|emb|CAV17717.1| Hypothetical protein VS_0722 [Vibrio splendidus LGP32] Length = 153 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 59/163 (36%), Positives = 87/163 (53%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN + ++ K + + EL++ D+ Sbjct: 3 IELDLQLAVENEQ---GLPTEQDIQLWLDKTIPQF--------QENAELTVRIVDTQESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYRG DKPTNVLSFP + G +LGD+++ +++E EA K H H Sbjct: 52 QLNHEYRGKDKPTNVLSFPFE--APPGIELDLLGDLIICRQVVEKEAEEQSKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++ +G DPY ++ Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQSMGFEDPYILE 152 >gi|86148577|ref|ZP_01066862.1| hypothetical protein MED222_02087 [Vibrio sp. MED222] gi|85833643|gb|EAQ51816.1| hypothetical protein MED222_02087 [Vibrio sp. MED222] Length = 153 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 87/163 (53%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN + ++ K + + EL++ D+ Sbjct: 3 IELDLQLAVENEQ---GLPTEQDIQLWLDKTIPQF--------QESAELTVRIVDTQESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN +YRG DKPTNVLSFP + G +LGD+++ +++E EA K H H Sbjct: 52 QLNHDYRGKDKPTNVLSFPFE--APPGVELDLLGDLIICRQVVEKEAEEQSKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++ +G DPY ++ Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQTMGFEDPYILE 152 >gi|261867460|ref|YP_003255382.1| putative metalloprotease [Aggregatibacter actinomycetemcomitans D11S-1] gi|46577549|sp|Q9JRS8|RRMF_AGGAC RecName: Full=Probable rRNA maturation factor gi|8096199|dbj|BAA96100.1| unnamed protein product [Actinobacillus actinomycetemcomitans] gi|261412792|gb|ACX82163.1| putative metalloprotease in flp 5' region [Aggregatibacter actinomycetemcomitans D11S-1] Length = 154 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 56/167 (33%), Positives = 79/167 (47%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + +DLQIA + + + + VE+++ D Sbjct: 1 MGKMIIDLQIASADESGLPTAAQIEQWATAAVQ------------PQSGEVEMTVRIVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LNF YRG D PTNVLSFP D +LGD+V+ +++E EA K Sbjct: 49 TESHALNFNYRGKDHPTNVLSFPFE--CPDEVELPLLGDLVICRQVVEREAQEQEKPLIA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMESLETQIMMGLGFVDPYLSE 153 >gi|330445219|ref|ZP_08308871.1| conserved protein involved in translation [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489410|dbj|GAA03368.1| conserved protein involved in translation [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 154 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 87/161 (54%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ A E+ D + + AV+ + E+++ D L Sbjct: 5 LDLQYATES---QDGLPTEAEFQQWLDAAVTPFQA--------DAEVTIRLVDEADSHEL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N EYRG D+PTNVLSFP + G +LGD+++ +++E EA K + H H++ Sbjct: 54 NLEYRGKDRPTNVLSFPFE--APPGIELELLGDLIICRQVVEKEALEQNKPLKAHWAHMV 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH++D +A MEGLE I++++G DPY + Sbjct: 112 VHGSLHLLGYDHIEDDEAEEMEGLETEIMQNMGFVDPYISE 152 >gi|145572766|sp|Q1BTS1|RRMF_BURCA RecName: Full=Probable rRNA maturation factor gi|145572773|sp|A0KAB8|RRMF_BURCH RecName: Full=Probable rRNA maturation factor Length = 172 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 57/160 (35%), Positives = 80/160 (50%), Gaps = 11/160 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L+L ++V+ DEI + K ++ I F +L++ F + TL Sbjct: 23 LELDLSVQYG---DEITSDVRKTLPKRKLIAEWIEPALFAS---AQLTVRFVGENEGRTL 76 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YR D PTNVL+F A ++GD+VL ++E EA+ GK H HL+ Sbjct: 77 NAGYRHKDYPTNVLTFAYDAAPDG----TVIGDLVLCCPVVEKEAHDQGKPLAAHYAHLL 132 Query: 131 IHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 +HG LH GYDH D+DA ME LE IL LG +PY+ Sbjct: 133 VHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYQ 172 >gi|153840647|ref|ZP_01993314.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] gi|260900743|ref|ZP_05909138.1| putative metalloprotease [Vibrio parahaemolyticus AQ4037] gi|149745688|gb|EDM56819.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] gi|308108997|gb|EFO46537.1| putative metalloprotease [Vibrio parahaemolyticus AQ4037] Length = 154 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 88/163 (53%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN + + + ++ K + + + E+++ D Sbjct: 3 IELDLQLAVENE---EGLPSQQDFQLWLDKTI--------PLFQPQAEVTIRIVDEKESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYRG DKPTNVLSFP + G +LGD+++ +++E EA K H H Sbjct: 52 ALNHEYRGKDKPTNVLSFPFE--APPGMEIDLLGDLIICRQVVEKEAIEQNKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGYEDPYIAE 152 >gi|28897505|ref|NP_797110.1| putative metalloprotease [Vibrio parahaemolyticus RIMD 2210633] gi|260363860|ref|ZP_05776612.1| putative metalloprotease [Vibrio parahaemolyticus K5030] gi|260878353|ref|ZP_05890708.1| putative metalloprotease [Vibrio parahaemolyticus AN-5034] gi|260898987|ref|ZP_05907428.1| putative metalloprotease [Vibrio parahaemolyticus Peru-466] gi|31077048|sp|Q87RP6|RRMF_VIBPA RecName: Full=Probable rRNA maturation factor gi|28805717|dbj|BAC58994.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|308087470|gb|EFO37165.1| putative metalloprotease [Vibrio parahaemolyticus Peru-466] gi|308090264|gb|EFO39959.1| putative metalloprotease [Vibrio parahaemolyticus AN-5034] gi|308114631|gb|EFO52171.1| putative metalloprotease [Vibrio parahaemolyticus K5030] gi|328472486|gb|EGF43349.1| metal-binding heat shock protein [Vibrio parahaemolyticus 10329] Length = 154 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 88/163 (53%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN + + + ++ K + + + E+++ D Sbjct: 3 IELDLQLAVENE---EGLPSQQDFQLWLDKTI--------PLFQPQAEVTIRIVDEKESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYRG DKPTNVLSFP + G +LGD+++ +++E EA K H H Sbjct: 52 ALNHEYRGKDKPTNVLSFPFE--APPGMEIDLLGDLIICRQVVEKEAIEQNKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGYEDPYIAE 152 >gi|254509288|ref|ZP_05121380.1| putative metalloprotease [Vibrio parahaemolyticus 16] gi|219547776|gb|EED24809.1| putative metalloprotease [Vibrio parahaemolyticus 16] Length = 154 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 84/163 (51%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ AVE+ + + + K + + EL++ D Sbjct: 3 IELDLQFAVESN---EGLPTEQDFQTWLDKTIIPF--------QQDAELTIRIVDEEESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYRG DKPTNVLSFP G +LGD+++ +++E EA K H H Sbjct: 52 QLNHEYRGKDKPTNVLSFPFEV--PPGIEINLLGDLIICKQVVEREAQEQNKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFEDPYLAE 152 >gi|84394392|ref|ZP_00993111.1| hypothetical protein V12B01_09906 [Vibrio splendidus 12B01] gi|84374994|gb|EAP91922.1| hypothetical protein V12B01_09906 [Vibrio splendidus 12B01] Length = 153 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 59/163 (36%), Positives = 86/163 (52%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQIAVEN + ++ K + + EL++ D+ Sbjct: 3 IELDLQIAVENEQ---GLPTEQDIQLWLDKTIPQF--------QENAELTVRIVDTEESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN +YRG DKPTNVLSFP G +LGD+++ +++E EA K H H Sbjct: 52 QLNHDYRGKDKPTNVLSFPFEV--PPGMELDLLGDLIICRQVVEKEAEEQNKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++ +G DPY ++ Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQTMGFEDPYILE 152 >gi|188576119|ref|YP_001913048.1| putative metalloprotease [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520571|gb|ACD58516.1| conserved hypothetical protein, putative [Xanthomonas oryzae pv. oryzae PXO99A] Length = 137 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 57/138 (41%), Positives = 73/138 (52%), Gaps = 6/138 (4%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--S 93 F K V+ + +L++ D +LN YRG D TNVLSFP Sbjct: 3 FRKWVAAALKGRI----READLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAELPEGLP 58 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 G +LGD+V+ ++ EA GK H HL +HG LHLLG+DH DDK+A ME Sbjct: 59 KGIKMPLLGDLVICAPVVAREAAEQGKSLAAHYAHLTVHGTLHLLGWDHDDDKEADAMEQ 118 Query: 154 LERSILEDLGINDPYEVD 171 LER IL DLGI+DPY + Sbjct: 119 LEREILADLGIDDPYAGE 136 >gi|59799018|sp|Q62ML1|RRMF_BURMA RecName: Full=Probable rRNA maturation factor gi|145558842|sp|Q3JVV3|RRMF_BURP1 RecName: Full=Probable rRNA maturation factor Length = 184 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L +AV+ DEI + K ++ + F + + ++ F + LN Sbjct: 36 ELDLAVQYG---DEIGDAQRKSLPKRKVIAEWLEPAIF---SDTQFTVRFVGADEGRALN 89 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D TNVL+F + + D+VL ++E EA GK H HL++ Sbjct: 90 HSYRHKDYATNVLTFAYGEEPDG----VTVADLVLCCPVVEKEAREQGKTLVAHYAHLLV 145 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 146 HGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 184 >gi|198282886|ref|YP_002219207.1| hypothetical protein Lferr_0750 [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247407|gb|ACH83000.1| protein of unknown function UPF0054 [Acidithiobacillus ferrooxidans ATCC 53993] Length = 165 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 61/161 (37%), Positives = 81/161 (50%), Gaps = 2/161 (1%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + RL L++AV++ + + R +A+S S + I ELSL F + Sbjct: 1 MSRLYLRMAVDDVVAAMPLPPRGEVRRSILQALS-APSARVSADDRIRELSLTFVGDAEM 59 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN YR PTN LSFP L LGDIV+A ++ EA GK +H Sbjct: 60 AALNEGYRHKAAPTNCLSFPQDALPVLFRRDL-LGDIVIAPAVVGREAAAQGKSLRDHYR 118 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL+IH LHLLGYDH DA ME LE +L ++G+ DPY Sbjct: 119 HLLIHSTLHLLGYDHELAADAQEMEALETRLLAEMGVADPY 159 >gi|148981400|ref|ZP_01816396.1| hypothetical protein VSWAT3_09548 [Vibrionales bacterium SWAT-3] gi|145960892|gb|EDK26222.1| hypothetical protein VSWAT3_09548 [Vibrionales bacterium SWAT-3] Length = 153 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 59/163 (36%), Positives = 86/163 (52%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN + ++ K + + EL++ D+ Sbjct: 3 IELDLQLAVENEQ---GLPTEHDIQLWLDKTIPQF--------QKSAELTIRIVDTEESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYRG DKPTNVLSFP + G LGD+++ +++E EA K H H Sbjct: 52 QLNHEYRGKDKPTNVLSFPFE--APPGIELDFLGDLIICRQVVEKEAEEQNKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++ +G DPY ++ Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQAMGFEDPYILE 152 >gi|262374160|ref|ZP_06067437.1| metal-dependent hydrolase [Acinetobacter junii SH205] gi|262311171|gb|EEY92258.1| metal-dependent hydrolase [Acinetobacter junii SH205] Length = 161 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 8/164 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + ++++ +++ L+ K + + F + E+ + D L Sbjct: 1 MKINLSLQQDFQANDLPLK---RGQIKKQIETALRHVGF--DADCEIGIACVDLAESHEL 55 Query: 71 NFEYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YR DKPTNVLSFP+ + LGD+V+ ++ EA K +H H Sbjct: 56 NLQYREKDKPTNVLSFPSDIPEEMLSLLEAEPLGDLVICIPVVLQEAAEQQKTPSDHFTH 115 Query: 129 LIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGINDPYEVD 171 L++HG LHLLGYDH + +A ME LE IL+ LGI++PY+ D Sbjct: 116 LLVHGILHLLGYDHETSEVEAEEMEALEIEILKKLGISNPYQAD 159 >gi|260773263|ref|ZP_05882179.1| predicted metal-dependent hydrolase [Vibrio metschnikovii CIP 69.14] gi|260612402|gb|EEX37605.1| predicted metal-dependent hydrolase [Vibrio metschnikovii CIP 69.14] Length = 154 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQIAVE DE L + + + S ++ E+++ D Sbjct: 3 IELDLQIAVE-----DEQGLPSFDDFLI------WFSAAVTPFQSQAEVTIRIVDQAESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YRG DKPTNVLSFP + +LGD+V+ +++E EA K H H Sbjct: 52 QLNLNYRGKDKPTNVLSFPFEAPAEIELD--LLGDLVICRQVVEQEALEQEKPLMAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH+DD++A ME LE I++++G +DPY + Sbjct: 110 MVVHGTLHLLGYDHIDDQEADEMEALETEIMQNMGFDDPYLAE 152 >gi|15837505|ref|NP_298193.1| putative metalloprotease [Xylella fastidiosa 9a5c] gi|26006920|sp|Q9PEX5|RRMF_XYLFA RecName: Full=Probable rRNA maturation factor gi|9105822|gb|AAF83713.1|AE003930_3 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 161 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 75/161 (46%), Gaps = 10/161 (6%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L + + L ++ A + I K +L++ D LN+ Sbjct: 8 LNVGISYGLPRTKLPAAVSFRKWVAATLQGRIRK--------ADLAIRIVDEKEGRALNY 59 Query: 73 EYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 YR D TNVLSFP +LGDIV+ +I EA GK H HL Sbjct: 60 HYRNKDYATNVLSFPAQLPEPLPKALKIPLLGDIVMCAPVIAREAAEQGKSLSAHYAHLT 119 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLG++H D ++A ME LER IL +LGI+DPY + Sbjct: 120 VHGTLHLLGWNHEDHQEADAMEQLEREILANLGISDPYLEE 160 >gi|187477342|ref|YP_785366.1| putative metalloprotease [Bordetella avium 197N] gi|123514086|sp|Q2KWD6|RRMF_BORA1 RecName: Full=Probable rRNA maturation factor gi|115421928|emb|CAJ48448.1| conserved hypothetical protein [Bordetella avium 197N] Length = 161 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 45/116 (38%), Positives = 58/116 (50%), Gaps = 4/116 (3%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 EL++ LN ++RG D TNVL+F GDIV+ ++ Sbjct: 46 QAAELNVRLVGQAEGRRLNADFRGRDYATNVLTFEYGVDPLG----TARGDIVICAPVLA 101 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA K F +H HL IHG LH LGYDH+ ++A ME LE IL +GI DPY Sbjct: 102 REAREQKKSFVDHATHLTIHGVLHALGYDHIKVREAKRMEALETRILARMGIADPY 157 >gi|226939223|ref|YP_002794294.1| metal-dependent hydrolase [Laribacter hongkongensis HLHK9] gi|254801582|sp|C1DAV4|RRMF_LARHH RecName: Full=Probable rRNA maturation factor gi|226714147|gb|ACO73285.1| Predicted metal-dependent hydrolase [Laribacter hongkongensis HLHK9] Length = 166 Score = 123 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 57/174 (32%), Positives = 80/174 (45%), Gaps = 12/174 (6%) Query: 1 MSVKKVNL---PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVEL 57 M + K PR +L + ++ + + + A+ + ++ Sbjct: 1 MKLAKTRFRPAPR-ELDLNIDYRVAATGLPRPSDFARWVGAALQ--------GRSRPAQI 51 Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANV 117 L D+ + LN EYRG D TNVLSF ++GDIVLA E++ EA Sbjct: 52 GLHVVDNAEGQRLNAEYRGKDSATNVLSFALNEGEEAVAGLPLMGDIVLAAEVVAREAAE 111 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK+ H HL +HG LHL G+DH D +A ME LE IL LG DPY V+ Sbjct: 112 QGKDLHAHYAHLTVHGMLHLQGHDHETDTEAEAMEALETVILARLGYTDPYAVE 165 >gi|323259260|gb|EGA42903.1| metal-binding heat shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] Length = 146 Score = 123 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 53/139 (38%), Positives = 77/139 (55%), Gaps = 6/139 (4%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E F + + +I + + E+++ D LN YRG DKPTNVLSFP + Sbjct: 10 EAQFQRWLDGVIPQF----QEEAEVTIRLVDEAESHDLNLTYRGKDKPTNVLSFPFE--A 63 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 G +LGD+++ +++E EA K E H H+++HG LHLLGYDH+DD +A ME Sbjct: 64 PPGIEMPLLGDLIICRQVVEQEAQEQSKPLEAHWAHMVVHGSLHLLGYDHIDDDEAEEME 123 Query: 153 GLERSILEDLGINDPYEVD 171 LE I+ +G DPY + Sbjct: 124 SLETEIMLAMGYEDPYIAE 142 >gi|217969296|ref|YP_002354530.1| unkown domain/ metalloprotease fusion protein [Thauera sp. MZ1T] gi|217506623|gb|ACK53634.1| protein of unknown function UPF0054 [Thauera sp. MZ1T] Length = 274 Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 6/136 (4%) Query: 39 AVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS 98 +++ ++++ LN +YRG D TNVL+F A Sbjct: 135 KKNHIRRWAAAALRASAQVTVRLVGEAEGRALNRDYRGKDYATNVLTFAYAEGEDLPGLP 194 Query: 99 ------LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 + GD+VL ++ EA GK E H HL++HG LHL GYDH ++ +A ME Sbjct: 195 AAAADVPLAGDLVLCVPVVVREAAAQGKTLEAHFAHLVVHGMLHLQGYDHENETEAAEME 254 Query: 153 GLERSILEDLGINDPY 168 LE +IL +LG DPY Sbjct: 255 ALETAILRELGYADPY 270 >gi|110636245|ref|YP_676453.1| hypothetical protein Meso_3921 [Mesorhizobium sp. BNC1] gi|123161515|sp|Q11BD7|RRMF_MESSB RecName: Full=Probable rRNA maturation factor gi|110287229|gb|ABG65288.1| protein of unknown function UPF0054 [Chelativorans sp. BNC1] Length = 163 Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 66/162 (40%), Positives = 84/162 (51%), Gaps = 6/162 (3%) Query: 7 NLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 + P + AV W E LR L E + + LS++FTD Sbjct: 7 SSPAFTIDYAVATGDWPAEDVLRGLVER------AVTAAAARTDGPLQASLSVLFTDDAE 60 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + LN +RG DKPTNVLSFP + + GDI L YE + EA GK FE+HL Sbjct: 61 MRALNARFRGKDKPTNVLSFPAPDSMVPPGTPRHFGDIALGYETVSREAKEEGKSFEHHL 120 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL++HGFLHL G+DH + +A ME LER IL+ L I DPY Sbjct: 121 THLVVHGFLHLAGHDHETEVEAEEMEQLEREILQSLAIGDPY 162 >gi|52841670|ref|YP_095469.1| metal dependent hydrolase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54294525|ref|YP_126940.1| hypothetical protein lpl1601 [Legionella pneumophila str. Lens] gi|54297350|ref|YP_123719.1| hypothetical protein lpp1395 [Legionella pneumophila str. Paris] gi|148358971|ref|YP_001250178.1| metal dependent hydrolase [Legionella pneumophila str. Corby] gi|296107020|ref|YP_003618720.1| Predicted metal-dependent hydrolase [Legionella pneumophila 2300/99 Alcoy] gi|59799081|sp|Q5WW59|RRMF_LEGPL RecName: Full=Probable rRNA maturation factor gi|59799082|sp|Q5X5C5|RRMF_LEGPA RecName: Full=Probable rRNA maturation factor gi|59799085|sp|Q5ZVK0|RRMF_LEGPH RecName: Full=Probable rRNA maturation factor gi|166235104|sp|A5IBT2|RRMF_LEGPC RecName: Full=Probable rRNA maturation factor gi|52628781|gb|AAU27522.1| metal dependent hydrolase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53751135|emb|CAH12546.1| hypothetical protein lpp1395 [Legionella pneumophila str. Paris] gi|53754357|emb|CAH15841.1| hypothetical protein lpl1601 [Legionella pneumophila str. Lens] gi|148280744|gb|ABQ54832.1| metal dependent hydrolase [Legionella pneumophila str. Corby] gi|295648921|gb|ADG24768.1| Predicted metal-dependent hydrolase [Legionella pneumophila 2300/99 Alcoy] Length = 158 Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 48/132 (36%), Positives = 76/132 (57%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 ++ L S + EL++ D + LN YR +KPTNVL+FP + ++ Sbjct: 22 ITKLASLALRDHKQDAELTVRLVDVEEMTYLNHTYRKKNKPTNVLAFPCSLPANIELECP 81 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGD+V+ E++ E+ K H ++IHG LHLLGYDH+ D++A +M+ LE +L Sbjct: 82 LLGDVVICPEVLLAESAQFNKSLHAHWSLILIHGVLHLLGYDHIKDEEASIMQMLEAKLL 141 Query: 160 EDLGINDPYEVD 171 +LG +PYEV+ Sbjct: 142 AELGYANPYEVE 153 >gi|59711364|ref|YP_204140.1| putative metalloprotease [Vibrio fischeri ES114] gi|71658769|sp|Q5E6U4|RRMF_VIBF1 RecName: Full=Probable rRNA maturation factor gi|59479465|gb|AAW85252.1| conserved protein [Vibrio fischeri ES114] Length = 153 Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 57/163 (34%), Positives = 81/163 (49%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQIA EN + + + EL++ D Sbjct: 3 IELDLQIACENEN---GLPSEKELMTWLNAVIPQFQPQ--------AELTIRIVDEKESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYRG DKPTNVLSFP + G +LGD+++ +++E EA K H H Sbjct: 52 ELNHEYRGKDKPTNVLSFPFE--APPGLELNLLGDLIICRQVVEEEAIEQNKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE +++ +G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETELMQGMGFEDPYIAE 152 >gi|254787741|ref|YP_003075170.1| hypothetical protein TERTU_3876 [Teredinibacter turnerae T7901] gi|237685656|gb|ACR12920.1| conserved hypothetical protein TIGR00043 [Teredinibacter turnerae T7901] Length = 155 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 55/153 (35%), Positives = 73/153 (47%), Gaps = 11/153 (7%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 VE + DE L + VFA + + + D E LN YRG Sbjct: 13 VETSAMPDERDLLSWLNAVFASQPATFTEP---------NICVRIVDEGESEELNSTYRG 63 Query: 77 IDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 PTNVLSFP G +LGD+V+ +++ EA K H H+++HG LH Sbjct: 64 KHSPTNVLSFPADL--PPGVDIELLGDLVICAQVVAREAEEQAKAPAAHWAHMVVHGCLH 121 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 LLGYDH++D +A ME LE IL+ L PYE Sbjct: 122 LLGYDHIEDDEADAMEALETKILQALDFPPPYE 154 >gi|254516560|ref|ZP_05128619.1| putative metalloprotease H16_A0526 [gamma proteobacterium NOR5-3] gi|219674983|gb|EED31350.1| putative metalloprotease H16_A0526 [gamma proteobacterium NOR5-3] Length = 163 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 79/162 (48%), Gaps = 9/162 (5%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L L + E ++ + +A + + + E +L D+ ++ Sbjct: 1 MLTLDVF-------RETLEKSPDDQTLLRAAECALLQSNANRHKHWEAALRIVDAKEMQQ 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG D+PTNVLSFP + +LGDIV+ +++ EA GK H H+ Sbjct: 54 LNAQYRGKDRPTNVLSFPADLPADVTLD--LLGDIVICAPVVQEEAATQGKPLAAHWDHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLG+DH D +A ME LE L LG PY+ D Sbjct: 112 LIHGVLHLLGFDHESDAEATHMELLETQALATLGWPCPYQAD 153 >gi|307610143|emb|CBW99689.1| hypothetical protein LPW_14571 [Legionella pneumophila 130b] Length = 158 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 48/132 (36%), Positives = 75/132 (56%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 ++ L S + EL++ D + LN YR +KPTNVL+FP + + Sbjct: 22 ITKLASLALRDHKQDAELTVRLVDVEEMTYLNHTYRKKNKPTNVLAFPCSLPENIELECP 81 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGD+V+ E++ E+ K H ++IHG LHLLGYDH+ D++A +M+ LE +L Sbjct: 82 LLGDVVICPEVLLAESAQFNKSLHAHWSLILIHGVLHLLGYDHIKDEEASIMQMLEAKLL 141 Query: 160 EDLGINDPYEVD 171 +LG +PYEV+ Sbjct: 142 AELGYANPYEVE 153 >gi|304310520|ref|YP_003810118.1| Protein of unknown function UPF0054 [gamma proteobacterium HdN1] gi|301796253|emb|CBL44461.1| Protein of unknown function UPF0054 [gamma proteobacterium HdN1] Length = 166 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 59/162 (36%), Positives = 77/162 (47%), Gaps = 5/162 (3%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENI---VELSLVFTDSHRIE 68 L ++N + + C A + K + EL+L Sbjct: 3 TLDFVLQNEDEIEGVPSEADCLRWAQAAFDAVTQKSPLNPADNPIPWELTLRVVLPTESR 62 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYRG D PTNVLSFP + G S +LGD+ + EI+E EA GK H H Sbjct: 63 ELNREYRGKDAPTNVLSFPFE--APPGISIPILGDLAICAEIVEQEAREQGKASNAHWAH 120 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 ++IHG LHLLG+DH+ D +A ME LE S+L I DPY Sbjct: 121 MVIHGTLHLLGFDHIHDDEADAMEALEISLLAGFDITDPYGD 162 >gi|325267029|ref|ZP_08133699.1| metal-dependent hydrolase [Kingella denitrificans ATCC 33394] gi|324981529|gb|EGC17171.1| metal-dependent hydrolase [Kingella denitrificans ATCC 33394] Length = 167 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 82/173 (47%), Gaps = 11/173 (6%) Query: 1 MSVKKVNLPRLDLQ---IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVEL 57 M + P L +Q +++ L E F + + + + Y EL Sbjct: 1 MKKHTKHFPFLAIQRQRFSLDYQNRSSADGLPD--EKQFYRWIWHALKSHY----RRAEL 54 Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM--LGDIVLAYEIIEIEA 115 SLV D N +YRG D TNVLSF S + GD+++ +++ EA Sbjct: 55 SLVLLDEEEARAYNRDYRGKDYATNVLSFALNEGESMFADTQDTLYGDLIICPQVVAREA 114 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 GK +H HL+IHG LHL+G+DH++D+DA ME LE +L L I +PY Sbjct: 115 AEQGKPLHHHFAHLVIHGTLHLMGFDHIEDEDADQMEALEIELLRQLNIPNPY 167 >gi|119944306|ref|YP_941986.1| hypothetical protein Ping_0533 [Psychromonas ingrahamii 37] gi|145558834|sp|A1SSC2|RRMF_PSYIN RecName: Full=Probable rRNA maturation factor gi|119862910|gb|ABM02387.1| hypothetical protein UPF0054 [Psychromonas ingrahamii 37] Length = 158 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 58/160 (36%), Positives = 80/160 (50%), Gaps = 9/160 (5%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 DLQIA + F K + I G EL++ D I LN Sbjct: 6 DLQIACSD-------PNDLPMPASFEKWIEAAILGGSESHREEAELTVRIVDQDEIMQLN 58 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +YR I K TNVL+FP + G + +LGD+++ E++E EA + GK H H+ I Sbjct: 59 HQYRNISKTTNVLAFPFQ--NPPGLTLPLLGDLIICKEVVESEAKLQGKSLTAHWAHMSI 116 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H LHLLGYDH++ +A ME LE +L +LG DPY + Sbjct: 117 HSTLHLLGYDHIEQAEAVEMESLETKLLTELGFTDPYLSE 156 >gi|85374528|ref|YP_458590.1| metal-dependent hydrolase [Erythrobacter litoralis HTCC2594] gi|122544125|sp|Q2N948|RRMF_ERYLH RecName: Full=Probable rRNA maturation factor gi|84787611|gb|ABC63793.1| predicted metal-dependent hydrolase [Erythrobacter litoralis HTCC2594] Length = 161 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 63/166 (37%), Positives = 78/166 (46%), Gaps = 13/166 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L+I +E+ W D E + A + +E S++FT ++ L Sbjct: 1 MKLEIEIEH--WPD-----GEWESITGGAAKATRDVEPALAHARLETSVLFTSDEQVHVL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFAS-----SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 N E+R DKPTNVLSFP MLGDI LAYE EA G E H Sbjct: 54 NREWRERDKPTNVLSFPMLDRDRLRALEPEGPPEMLGDIALAYETCAREAEEKGISLEAH 113 Query: 126 LVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYEV 170 HLI+HG LHL G+DH D A ME LE + L LGI DPY Sbjct: 114 ATHLIVHGLLHLAGHDHVDSDAQAEEMEALEIAALAKLGIADPYGD 159 >gi|296282477|ref|ZP_06860475.1| metal-dependent hydrolase [Citromicrobium bathyomarinum JL354] Length = 160 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 80/166 (48%), Gaps = 13/166 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++L+I VE+ W D + + +++ + +E S++FT ++ L Sbjct: 1 MELEIDVEH--WPD-----GEWDALASRSADAAAQVEPALANARLEASILFTSDAQVHEL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASS-----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 N ++R DKPTNVLSFP G +LGDI LAYE EA G E H Sbjct: 54 NRDWREKDKPTNVLSFPMLERDELIDLAPGGPPALLGDIALAYETCAREAAEKGIPLEAH 113 Query: 126 LVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYEV 170 HL++HG LHL G DH DA ME LE L LG+ DPY Sbjct: 114 ASHLVVHGLLHLAGLDHEISPADAQEMEALEVKALALLGLPDPYGD 159 >gi|255262455|ref|ZP_05341797.1| conserved hypothetical protein [Thalassiobium sp. R2A62] gi|255104790|gb|EET47464.1| conserved hypothetical protein [Thalassiobium sp. R2A62] Length = 163 Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats. Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 20/170 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 +++ +++A W L + AV + ++ +S++ D RI+ LN Sbjct: 2 IEVQIDDARWVGFEALASRAADAVFDAV--------GLDRDVWLVSVLACDDARIQVLNA 53 Query: 73 EYRGIDKPTNVLSFPTAFAS------------SDGCSSLMLGDIVLAYEIIEIEANVLGK 120 ++R D TNVLS+P + D LGD+ ++++ EA Sbjct: 54 DFREKDGATNVLSWPAQDLAAVGAGDKPDAPVPDPMGESELGDVAISFDTCAREAAEAAC 113 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +F++H+ HL+IHG LHLLGYDH+ D DA +ME LE IL LG+ DPY V Sbjct: 114 DFDDHVAHLMIHGTLHLLGYDHIRDADATLMETLEVQILGKLGLCDPYTV 163 >gi|82703810|ref|YP_413376.1| hypothetical protein Nmul_A2697 [Nitrosospira multiformis ATCC 25196] gi|123543797|sp|Q2Y5I7|RRMF_NITMU RecName: Full=Probable rRNA maturation factor gi|82411875|gb|ABB75984.1| Protein of unknown function UPF0054 [Nitrosospira multiformis ATCC 25196] Length = 189 Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats. Identities = 53/172 (30%), Positives = 75/172 (43%), Gaps = 22/172 (12%) Query: 5 KVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 K ++ +Q A + + R L A+++ E++L D Sbjct: 20 KPAKLKMTVQYATST---REPLPSRALLRKWVKAALAH-----------DAEIALRIVDE 65 Query: 65 HRIETLNFEYRGIDKPTNVLSF--------PTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 LN ++R D TNVL+F P + + + GDIVL ++E EA Sbjct: 66 EEGHRLNRDFRNKDYATNVLTFVYRDGQIHPDSPLGEKRGAYPLTGDIVLCAPVVENEAG 125 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K+ H HL +HG LHL GYDH +D+DA ME E IL LG DPY Sbjct: 126 QQQKDLMAHYAHLTVHGVLHLQGYDHQEDEDAKNMEETETRILAWLGYEDPY 177 >gi|145572775|sp|Q0BC19|RRMF_BURCM RecName: Full=Probable rRNA maturation factor Length = 175 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 49/134 (36%), Positives = 68/134 (50%), Gaps = 8/134 (5%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 K ++ I F + +L++ F TLN YR D PTNVL+F Sbjct: 49 RKLIAEWIEPALF---SSAQLTVRFVGEEEGRTLNDGYRHKDYPTNVLTFAYDPLPDG-- 103 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLE 155 ++GD+VL ++E EA GK H HL++HG LH GYDH ++DA ME LE Sbjct: 104 --TVIGDLVLCCPVVEKEAQEQGKPLAAHYAHLLVHGALHAQGYDHETSEEDAAEMEALE 161 Query: 156 RSILEDLGINDPYE 169 +IL LG +PY+ Sbjct: 162 VAILAKLGFPNPYQ 175 >gi|149186038|ref|ZP_01864352.1| predicted metal-dependent hydrolase [Erythrobacter sp. SD-21] gi|148830069|gb|EDL48506.1| predicted metal-dependent hydrolase [Erythrobacter sp. SD-21] Length = 161 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 64/166 (38%), Positives = 84/166 (50%), Gaps = 12/166 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL I ++ W D + + KA + + + + SL+FT ++ L Sbjct: 1 MDLDIEID--GWPDAEDWEVISQ----KAYEAIAQVEFALAHPRLTTSLLFTSEEQVHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 N E+RG DKPTNVLSFP A MLGDI LA+E + EA+ G +H Sbjct: 55 NKEWRGKDKPTNVLSFPMLERVDLIALEADGPPEMLGDIALAFETCQREADEKGVSVRDH 114 Query: 126 LVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYEV 170 HL+IHGFLHL G+DH D+ A ME LE L LGI DPY Sbjct: 115 TAHLLIHGFLHLAGHDHVDSDEQAAAMEKLEIEALAKLGIADPYGD 160 >gi|46577519|sp|Q8Y208|RRMF_RALSO RecName: Full=Probable rRNA maturation factor Length = 187 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 74/161 (45%), Gaps = 10/161 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L L + V++ D + + K + I+ F +L++ F D T Sbjct: 36 MLTLDLTVQHG---DALKAAARKALPKQKDIEAWIAPALFAD---AQLNVRFVDEEEGRT 89 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG D TNVL+F A D + DIVL ++E EA GK H HL Sbjct: 90 LNHTYRGKDYATNVLTFSYAETEDD----PVAADIVLCCPVVEQEAKDQGKPLRAHYAHL 145 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 I+HG LH GYDH D A MEG+E +L LG DPY Sbjct: 146 IVHGALHAQGYDHEDPAQAEEMEGIETEVLAGLGFPDPYAD 186 >gi|218666487|ref|YP_002425087.1| conserved hypothetical protein TIGR00043 [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518700|gb|ACK79286.1| conserved hypothetical protein TIGR00043 [Acidithiobacillus ferrooxidans ATCC 23270] Length = 158 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 76/154 (49%), Gaps = 2/154 (1%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 +AV++ + + R +A+S S + I ELSL F + LN Y Sbjct: 1 MAVDDVVAAMPLPPRGEVRRSILQALS-APSARVSADDRIRELSLTFVGDAEMAALNEGY 59 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 R PTN LSFP L LGDIV+A ++ EA GK +H HL+IH Sbjct: 60 RHKAAPTNCLSFPQDALPVLFRRDL-LGDIVIAPAVVGREAAAQGKSLRDHYRHLLIHST 118 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 LHLLGYDH DA ME LE +L ++G+ DPY Sbjct: 119 LHLLGYDHELAADAQEMEALETRLLAEMGVADPY 152 >gi|260427895|ref|ZP_05781874.1| conserved hypothetical protein [Citreicella sp. SE45] gi|260422387|gb|EEX15638.1| conserved hypothetical protein [Citreicella sp. SE45] Length = 159 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 51/126 (40%), Positives = 69/126 (54%), Gaps = 7/126 (5%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS-------SLMLG 102 + + E++++ D RI LN ++R PTNVLS+P+ + LG Sbjct: 34 LDPDGFEIAILACDDARIAELNGDFRDKPAPTNVLSWPSEERDPEDLPEPGMPGMPEELG 93 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DI +A+E EA K HL HLI+H LHLLGYDH+ D+DA VME LE IL L Sbjct: 94 DIAIAWETCLREAQEQNKPLSAHLTHLIVHATLHLLGYDHIRDEDATVMETLEVEILGKL 153 Query: 163 GINDPY 168 G+ +PY Sbjct: 154 GVANPY 159 >gi|84502866|ref|ZP_01000979.1| hypothetical protein OB2597_14786 [Oceanicola batsensis HTCC2597] gi|84388849|gb|EAQ01719.1| hypothetical protein OB2597_14786 [Oceanicola batsensis HTCC2597] Length = 164 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 16/166 (9%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I +E+ W + + E+SL+ D RI LN Sbjct: 4 IDIIIEDERWTATDLGPLAEAA------ATATLAHLGLDPGDWEISLLACDDARIAALNG 57 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLM----------LGDIVLAYEIIEIEANVLGKEF 122 ++RG PTNVLS+P+ +++ + LGDI +A+E + EA G+ Sbjct: 58 DFRGRRAPTNVLSWPSEERAAEAPGQVPTPPDPDGDPELGDIAIAFETCDREAREAGRPM 117 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +H+ HLI+H LHLLGYDH D DA +MEG E IL +G+ +PY Sbjct: 118 ADHVTHLIVHATLHLLGYDHESDLDATLMEGSEVEILGKMGLPNPY 163 >gi|254284310|ref|ZP_04959278.1| putative metalloprotease BUsg_427 [gamma proteobacterium NOR51-B] gi|219680513|gb|EED36862.1| putative metalloprotease BUsg_427 [gamma proteobacterium NOR51-B] Length = 162 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 2/141 (1%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 L + F++ V+ + G E+S+ I N +YR ++PTNVLSFP Sbjct: 13 LEAPDDDSFSRWVNAALVSGQHAGCFTPEVSVRIAGEREITAFNQQYRDRNRPTNVLSFP 72 Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + S +LGDIV+ ++ EA E+H HL +HG LHLLG+DH+ D + Sbjct: 73 ASV--PPEVESGLLGDIVICAPVVIAEAREQECSLESHWAHLTVHGTLHLLGFDHIRDDE 130 Query: 148 ACVMEGLERSILEDLGINDPY 168 A +ME LE S L +LG +PY Sbjct: 131 AEIMEALEVSALAELGFGNPY 151 >gi|30250260|ref|NP_842330.1| hypothetical protein NE2333 [Nitrosomonas europaea ATCC 19718] gi|46577433|sp|Q82SI9|RRMF_NITEU RecName: Full=Probable rRNA maturation factor gi|30181055|emb|CAD86245.1| Uncharacterized protein family UPF0054 [Nitrosomonas europaea ATCC 19718] Length = 164 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 71/156 (45%), Gaps = 17/156 (10%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 + V+ +I R L A+S E+ + D E LN ++ Sbjct: 24 LTVQYVADKTDIPNRRLFRKWVKAALS-----------KPAEVVIRIVDRQEGEILNRDF 72 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 RG TNVL+F LGDIVL +I EA GK+ H HL IHG Sbjct: 73 RGKSSATNVLTFVYDDDVPL------LGDIVLCAPVICNEAQQQGKDLTAHYAHLTIHGI 126 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 LHL GYDH+ D+DA VME LE I+ LG DPY + Sbjct: 127 LHLQGYDHIRDEDAVVMESLETEIITRLGYPDPYVI 162 >gi|117924738|ref|YP_865355.1| hypothetical protein Mmc1_1438 [Magnetococcus sp. MC-1] gi|145572756|sp|A0L7K6|RRMF_MAGSM RecName: Full=Probable rRNA maturation factor gi|117608494|gb|ABK43949.1| protein of unknown function UPF0054 [Magnetococcus sp. MC-1] Length = 147 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 49/123 (39%), Positives = 74/123 (60%), Gaps = 8/123 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-------GDIVL 106 +E+S++ +D ++ LN +YRG DKPTN+LSF + D ++ GD++L Sbjct: 24 PLEVSVLLSDDEAVQALNAQYRGKDKPTNILSFAMEEEADDAMPMPIMAGEPRLLGDLIL 83 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGIN 165 AY+ ++ EA K F+ HL HL++HG LHLLGYDH + +A E E +IL LG+ Sbjct: 84 AYQTVQREAAEQDKPFDQHLTHLLVHGTLHLLGYDHERSEDEAQQQEAREIAILAQLGLP 143 Query: 166 DPY 168 +PY Sbjct: 144 NPY 146 >gi|66047574|ref|YP_237415.1| putative metalloprotease [Pseudomonas syringae pv. syringae B728a] gi|75500575|sp|Q4ZN95|RRMF_PSEU2 RecName: Full=Probable rRNA maturation factor gi|63258281|gb|AAY39377.1| Protein of unknown function UPF0054 [Pseudomonas syringae pv. syringae B728a] gi|330969454|gb|EGH69520.1| metal-binding heat shock protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 166 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 87/164 (53%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQ+A E + DE LR CE+ + + EL++ D Sbjct: 1 MLELDLQVASETSA-PDEARLRLWCEMGLRQ------------RSADSELTIRLVDETEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R + TNVLSFP D +LGD+V+ ++ EA GK + H Sbjct: 48 RELNNTWRHKNYATNVLSFPAD-VPDDMLDIPLLGDLVICVPVVNREAVEQGKSVDAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 107 HMVIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|317047310|ref|YP_004114958.1| hypothetical protein Pat9b_1080 [Pantoea sp. At-9b] gi|316948927|gb|ADU68402.1| protein of unknown function UPF0054 [Pantoea sp. At-9b] Length = 157 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 85/167 (50%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E+ +E + E + E+++ D Sbjct: 1 MSAVILDLQLACAESQGLPEEAAFQRWLEAAVT------------PFQPESEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA GK E Sbjct: 49 AESHELNLTYRGKDKPTNVLSFPFE--APPGIELPLLGDLIICRQVVEQEAVEQGKSLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 107 HWAHMVVHGTLHLLGYDHIEDDEAEEMEALETEIMLALGYPDPYISE 153 >gi|289209297|ref|YP_003461363.1| hypothetical protein TK90_2137 [Thioalkalivibrio sp. K90mix] gi|288944928|gb|ADC72627.1| protein of unknown function UPF0054 [Thioalkalivibrio sp. K90mix] Length = 171 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 69/161 (42%), Gaps = 10/161 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L++ V+ AL + A +++L D+ Sbjct: 1 MATLEVVVQYALPRRGLPSAATLHRAARAAWRGT---------GRADVALRVVDADEGLE 51 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEIIEIEANVLGKEFENHLVH 128 LN +RG D TNVLSFP GDIVL ++ EA GK H H Sbjct: 52 LNRGFRGRDYATNVLSFPAPDLPPMAAGEPRYLGDIVLCAPVLAREAAEQGKSLRAHYSH 111 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +++HG LHL G DH + +A ME +ERSIL LG DPY+ Sbjct: 112 MVVHGLLHLQGMDHQESGEAEAMEAVERSILAGLGYPDPYQ 152 >gi|29653905|ref|NP_819597.1| hypothetical protein CBU_0567 [Coxiella burnetii RSA 493] gi|153208801|ref|ZP_01947028.1| conserved hypothetical protein TIGR00043 [Coxiella burnetii 'MSU Goat Q177'] gi|154706495|ref|YP_001424840.1| hypothetical metal-binding protein [Coxiella burnetii Dugway 5J108-111] gi|161830561|ref|YP_001596496.1| hypothetical protein COXBURSA331_A0681 [Coxiella burnetii RSA 331] gi|165919083|ref|ZP_02219169.1| conserved hypothetical protein TIGR00043 [Coxiella burnetii RSA 334] gi|212212943|ref|YP_002303879.1| hypothetical metal-binding protein [Coxiella burnetii CbuG_Q212] gi|212218812|ref|YP_002305599.1| hypothetical metal-binding protein [Coxiella burnetii CbuK_Q154] gi|46577440|sp|Q83DX5|RRMF_COXBU RecName: Full=Probable rRNA maturation factor gi|189038728|sp|A9KCP4|RRMF_COXBN RecName: Full=Probable rRNA maturation factor gi|189040577|sp|A9NC56|RRMF_COXBR RecName: Full=Probable rRNA maturation factor gi|226701644|sp|B6J855|RRMF_COXB1 RecName: Full=Probable rRNA maturation factor gi|226701649|sp|B6J1A6|RRMF_COXB2 RecName: Full=Probable rRNA maturation factor gi|29541168|gb|AAO90111.1| hypothetical metal-binding protein [Coxiella burnetii RSA 493] gi|120575707|gb|EAX32331.1| conserved hypothetical protein TIGR00043 [Coxiella burnetii 'MSU Goat Q177'] gi|154355781|gb|ABS77243.1| hypothetical metal-binding protein [Coxiella burnetii Dugway 5J108-111] gi|161762428|gb|ABX78070.1| conserved hypothetical protein TIGR00043 [Coxiella burnetii RSA 331] gi|165917217|gb|EDR35821.1| conserved hypothetical protein TIGR00043 [Coxiella burnetii RSA 334] gi|212011353|gb|ACJ18734.1| hypothetical metal-binding protein [Coxiella burnetii CbuG_Q212] gi|212013074|gb|ACJ20454.1| hypothetical metal-binding protein [Coxiella burnetii CbuK_Q154] Length = 152 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 56/160 (35%), Positives = 81/160 (50%), Gaps = 9/160 (5%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + + ++A +++ + E A+ +++ +N L++ F D Sbjct: 1 MISIDV--QHATQFEDLPSLSNIEQWVETALQFIVT-----DKNKSALTIRFIDKEESTE 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR PTNVLSFP G S GD+ + ++ EA+ K E H HL Sbjct: 54 LNEHYRHKKGPTNVLSFP--DEPIPGFPSESFGDLAICAPLVAEEAHAQHKTTEAHFAHL 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 I HGFLHLLGYDHV+++DA ME LE IL LG +PYE Sbjct: 112 ITHGFLHLLGYDHVENEDAEEMENLEIKILSQLGFENPYE 151 >gi|83595101|ref|YP_428853.1| hypothetical protein Rru_A3772 [Rhodospirillum rubrum ATCC 11170] gi|123525364|sp|Q2RMS9|RRMF_RHORT RecName: Full=Probable rRNA maturation factor gi|83578015|gb|ABC24566.1| Protein of unknown function UPF0054 [Rhodospirillum rubrum ATCC 11170] Length = 200 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 86/157 (54%), Gaps = 5/157 (3%) Query: 19 NALWGDEIH-LRTLCEVVFAKAVSNLISKGYFVKEN-IVELSLVFTDSHRIETLNFEYRG 76 W + + L E AV+ GY + +E+SL+ TD ++ LN +YRG Sbjct: 33 EGPWEALVPGVAALVEQAVLAAVAAGDPSGYGLTPGTPLEISLLLTDDAAVQALNRDYRG 92 Query: 77 IDKPTNVLSF---PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 DKPTNVLSF + ++LGD+ LA E + EA LG +H+ HL++HG Sbjct: 93 QDKPTNVLSFAALDAEEPLPEDGEPVLLGDVALARETVVREAADLGIAPADHVFHLVVHG 152 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 LHLLGYDH ++++A MEGLE +IL GI DPY Sbjct: 153 VLHLLGYDHEEEEEALDMEGLETAILGARGIADPYAD 189 >gi|218288622|ref|ZP_03492899.1| protein of unknown function UPF0054 [Alicyclobacillus acidocaldarius LAA1] gi|218241279|gb|EED08454.1| protein of unknown function UPF0054 [Alicyclobacillus acidocaldarius LAA1] Length = 157 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 15/164 (9%) Query: 8 LPRLDLQIAVENALWG---DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + RL + + E W + E V A + +G E+S++F + Sbjct: 1 MNRLSIDVTCE-VEWPLTPPHGDAQAFVERVLEAAAERIGVRG--------EVSVLFVND 51 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYEIIEIEANVLGKE 121 I LN YR +D+PT+VLSFP MLGDIV++ + +A G Sbjct: 52 DAIHELNRTYRQVDRPTDVLSFPMNEGEELADPDEVDPMLGDIVVSVDRAREQAEAYGHS 111 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 E + L++HGFLHL GYDH D+ M GL+ IL+ +G++ Sbjct: 112 LEREVAFLLVHGFLHLNGYDHEDEAGEREMFGLQEEILQGIGLS 155 >gi|330963482|gb|EGH63742.1| metal-binding heat shock protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 166 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 85/164 (51%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQ+A E DE R CE+ + + EL++ D Sbjct: 1 MLELDLQVASETPA-PDEARFRLWCEMGLRQ------------RSADSELTIRLVDETEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R + TNVLSFP D +LGD+V+ ++ EA GK + H Sbjct: 48 RELNHTWRHKNYATNVLSFPAD-VPDDMLDIPLLGDLVICVPVVNREAAEQGKSIDAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 107 HMVIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|332288753|ref|YP_004419605.1| putative metalloprotease [Gallibacterium anatis UMN179] gi|330431649|gb|AEC16708.1| putative metalloprotease [Gallibacterium anatis UMN179] Length = 158 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 90/166 (54%), Gaps = 14/166 (8%) Query: 7 NLPRL-DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 N L DLQIA E+ +L TL + + ++ +++ VE+++ D Sbjct: 4 NAEMLVDLQIASEDQS-----NLPTLQQ------FTYWATQAVKPQQDNVEMTIRIVDEE 52 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LNF YRG D+PTNVLSFP +G + +LGD+V+ +++E EA E H Sbjct: 53 ESHHLNFTYRGKDRPTNVLSFPFEV--PEGIALPLLGDLVICRQVVEKEAQEQQISLEAH 110 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL +HG LHLLGYDH++D +A ME LE I+ +G DPY + Sbjct: 111 YAHLTVHGCLHLLGYDHIEDDEAEEMENLETEIMLSMGYADPYVSE 156 >gi|254496479|ref|ZP_05109355.1| metal dependent hydrolase [Legionella drancourtii LLAP12] gi|254354296|gb|EET12955.1| metal dependent hydrolase [Legionella drancourtii LLAP12] Length = 158 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 78/135 (57%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 ++++ S + EL++ F + I LN YR +KPTNVL+FP+ Sbjct: 19 ENEITHVASLALRDYQKKAELTVRFVNHEEITYLNNTYRKKNKPTNVLAFPSELPLEIQL 78 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 +LGD+++ +++ E+N L K E H ++IHG LHLLGYDH+ D+DA VM+ +E Sbjct: 79 ECPLLGDVIICPDVLLAESNELNKTLEAHWSLILIHGILHLLGYDHIKDEDAAVMQSIEI 138 Query: 157 SILEDLGINDPYEVD 171 +L +LG +PY+ + Sbjct: 139 KLLAELGYANPYDAE 153 >gi|192288881|ref|YP_001989486.1| hypothetical protein Rpal_0450 [Rhodopseudomonas palustris TIE-1] gi|192282630|gb|ACE99010.1| protein of unknown function UPF0054 [Rhodopseudomonas palustris TIE-1] Length = 167 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 62/156 (39%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 ++ +E W E A + + EL+++ TD I LN Sbjct: 10 EVVIEADCWQAEASAEATVLRAIETAADAVDADTGG-----AELAVMLTDDDHIRQLNAS 64 Query: 74 YRGIDKPTNVLSFPT-AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +R DKPTNVLSFP + MLGDI +AY+ + EA+ GK F++HL HL +H Sbjct: 65 FRDKDKPTNVLSFPAAQPEVQPDGAPRMLGDIAIAYQTVRREADDEGKPFDHHLSHLAVH 124 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 GFLHL+GYDH D++A ME ER+IL LGI DPY Sbjct: 125 GFLHLVGYDHETDEEAEEMEDAERAILARLGIPDPY 160 >gi|325981204|ref|YP_004293606.1| hypothetical protein NAL212_0499 [Nitrosomonas sp. AL212] gi|325530723|gb|ADZ25444.1| protein of unknown function UPF0054 [Nitrosomonas sp. AL212] Length = 168 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 46/116 (39%), Positives = 56/116 (48%), Gaps = 6/116 (5%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 E+ L D LN ++R + TNVL+F A GDI+L +I Sbjct: 50 QEAEVVLRLVDEKEGRELNQQFRNKNYATNVLTFVYDDAEPL------TGDIILCAPVIS 103 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA K H HL IHG LHL GYDH++D DA ME LE IL LG +PY Sbjct: 104 EEAQQQNKNLMAHYAHLTIHGLLHLQGYDHIEDSDATAMEQLEIQILTKLGFTNPY 159 >gi|330811910|ref|YP_004356372.1| hypothetical protein PSEBR_a4946 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380018|gb|AEA71368.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 152 Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 84/164 (51%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQ+A E+A E R CE+ + + EL++ D Sbjct: 1 MLELDLQVACEHAA-PSEAQFRQWCELALRQ------------RSADSELTIRLVDEPEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R D TNVLSFP + +LGD+V+ ++E EA K E H Sbjct: 48 RELNHTWRQKDYATNVLSFPAD-VPDELLDIPLLGDLVICVPVVEREAAEQDKTPEAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL+IHG LHLLGYDH++D +A ME LER++L +LG DPY D Sbjct: 107 HLVIHGCLHLLGYDHIEDDEAEEMEALERTLLAELGHPDPYAGD 150 >gi|56460051|ref|YP_155332.1| metal-dependent hydrolase [Idiomarina loihiensis L2TR] gi|59799006|sp|Q5QYC3|RRMF_IDILO RecName: Full=Probable rRNA maturation factor gi|56179061|gb|AAV81783.1| Predicted metal-dependent hydrolase [Idiomarina loihiensis L2TR] Length = 163 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 54/137 (39%), Positives = 76/137 (55%), Gaps = 3/137 (2%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E V+ + + VEL++ + LN E+R D TNVLSFP F S Sbjct: 20 ENAVHSWVAATLD-YLQENDKAVELTVRIAALEEAQQLNNEFRNKDYATNVLSFP--FNS 76 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 +LGD+V+ ++E EA K +H H++IHG LHLLGYDH++D +A ME Sbjct: 77 PVELPVTLLGDLVICQSVVEREAEEQQKSAIDHWTHMVIHGTLHLLGYDHIEDDEAEEME 136 Query: 153 GLERSILEDLGINDPYE 169 +ER+IL LGI+DPY+ Sbjct: 137 QIERNILASLGISDPYQ 153 >gi|85709121|ref|ZP_01040187.1| predicted metal-dependent hydrolase [Erythrobacter sp. NAP1] gi|85690655|gb|EAQ30658.1| predicted metal-dependent hydrolase [Erythrobacter sp. NAP1] Length = 161 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 88/166 (53%), Gaps = 13/166 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++L+I +E+ W E + +A + + + +S++FT + TL Sbjct: 1 MELEIDLED--WP-----EGEWEALTQRAADAAAGVEPALASDRLSVSILFTSDGEVHTL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASS-----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 N E+R DKPTNVLSFP + + MLGDI LAYE EA ++H Sbjct: 54 NREWRQRDKPTNVLSFPMMERAELLELGEEGPPAMLGDIALAYETCAREAAEKNIPLDHH 113 Query: 126 LVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYEV 170 HLI+HG LHL G+DHV +++A VME LERS L ++GI DPY Sbjct: 114 AAHLIVHGLLHLAGHDHVHCEEEAQVMEDLERSALANMGIADPYND 159 >gi|294649234|ref|ZP_06726672.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] gi|292824901|gb|EFF83666.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] Length = 161 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 8/164 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + ++++ E+ L+ K + + F + E+ + D L Sbjct: 1 MKINLSLQQDFQTAELPLK---RSQIKKHIETALRHVGF--DADCEIGIACVDLAESHEL 55 Query: 71 NFEYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YR DKPTNVLSFP+ + LGD+V+ ++ EA K +H H Sbjct: 56 NLQYREKDKPTNVLSFPSDIPEEMLSLLDAEPLGDLVICMPVVLQEAEEQQKTPMDHFTH 115 Query: 129 LIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYEVD 171 L++HG LHLLGYDH + DA ME LE +IL+ L I +PY+ D Sbjct: 116 LLVHGILHLLGYDHETSESDAEEMEALEIAILKKLNIANPYQAD 159 >gi|238022353|ref|ZP_04602779.1| hypothetical protein GCWU000324_02260 [Kingella oralis ATCC 51147] gi|237866967|gb|EEP68009.1| hypothetical protein GCWU000324_02260 [Kingella oralis ATCC 51147] Length = 167 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 6/139 (4%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E F + + + + Y + E+SL+ D N +YR D TNVLSF Sbjct: 33 ERQFYQWIWHALKHEY----HRAEISLLLLDEADARAYNRDYRQKDYATNVLSFALNEGE 88 Query: 93 --SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 + GD+++ +++ EA GK +H HL++HG LHL+GYDH++D +A Sbjct: 89 MMLPAQDDTLRGDLIICPQVVRREATEQGKLLAHHYAHLVLHGTLHLMGYDHINDDEAEE 148 Query: 151 MEGLERSILEDLGINDPYE 169 ME LE +L LGI +PYE Sbjct: 149 MEALETRLLAQLGIANPYE 167 >gi|90407493|ref|ZP_01215676.1| hypothetical protein PCNPT3_11282 [Psychromonas sp. CNPT3] gi|90311414|gb|EAS39516.1| hypothetical protein PCNPT3_11282 [Psychromonas sp. CNPT3] Length = 157 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 85/159 (53%), Gaps = 9/159 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA DE L +L + + I KG + EL++ DS + L Sbjct: 5 IDLQIAT-----MDEKALPSLA--LIETWIKEAIIKGSSITREEAELTVRIVDSVESQQL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YR DKPTNVLSFP + G +LGD+V+ +I+E EA K+ H H++ Sbjct: 58 NGQYRHKDKPTNVLSFPFQ--APMGIQLPLLGDLVICKQIVEQEALEQNKDLNAHWAHML 115 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 IHG LHLLG+DH+ ++ A ME LE IL LG PY Sbjct: 116 IHGSLHLLGFDHIIEQQALEMESLETKILVTLGFPPPYN 154 >gi|13474616|ref|NP_106185.1| hypothetical protein mlr5536 [Mesorhizobium loti MAFF303099] gi|26006933|sp|Q98BK1|RRMF_RHILO RecName: Full=Probable rRNA maturation factor gi|14025370|dbj|BAB51971.1| mlr5536 [Mesorhizobium loti MAFF303099] Length = 166 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 74/160 (46%), Positives = 92/160 (57%), Gaps = 6/160 (3%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P +D+ I+VE W DE L L + A + G ELS+VF+D I Sbjct: 12 PPVDIDISVEAGDWPDEAGLARLVDRAVDAAFAETGVTG------RSELSVVFSDDAHIR 65 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 TLN E+RG DKPTNVLSFP + G MLGDIVLA E + EA + K +NH+ H Sbjct: 66 TLNAEWRGKDKPTNVLSFPAFPFAQGGPLPPMLGDIVLAAETVSREAALEDKPVQNHITH 125 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 L+IHG LHLLG+DH D +A ME +ER+ L L I DPY Sbjct: 126 LVIHGLLHLLGHDHETDAEAEAMEAIERAALARLAIPDPY 165 >gi|197335301|ref|YP_002155519.1| putative metalloprotease [Vibrio fischeri MJ11] gi|226702102|sp|B5FBL1|RRMF_VIBFM RecName: Full=Probable rRNA maturation factor gi|197316791|gb|ACH66238.1| putative metalloprotease [Vibrio fischeri MJ11] Length = 153 Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 57/163 (34%), Positives = 81/163 (49%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQIA EN + + + EL++ D Sbjct: 3 IELDLQIACENEN---GLPSEKDLMTWLNAVIPQFQPQ--------AELTIRIVDEKESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYRG DKPTNVLSFP + G +LGD+++ +++E EA K H H Sbjct: 52 ELNHEYRGKDKPTNVLSFPFE--APPGLELDLLGDLIICRQVVEEEAIEQNKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE +++ +G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETELMQGMGFEDPYIAE 152 >gi|213966837|ref|ZP_03394988.1| conserved hypothetical protein TIGR00043 [Pseudomonas syringae pv. tomato T1] gi|301381968|ref|ZP_07230386.1| putative metalloprotease [Pseudomonas syringae pv. tomato Max13] gi|302058772|ref|ZP_07250313.1| putative metalloprotease [Pseudomonas syringae pv. tomato K40] gi|302135148|ref|ZP_07261138.1| putative metalloprotease [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928687|gb|EEB62231.1| conserved hypothetical protein TIGR00043 [Pseudomonas syringae pv. tomato T1] gi|330873561|gb|EGH07710.1| metal-binding heat shock protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 166 Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 85/164 (51%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQ+A E DE R CE+ + + EL++ D Sbjct: 1 MLELDLQVASETPA-PDEARFRLWCEMGLRQ------------RSADSELTIRLVDETEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R + TNVLSFP D +LGD+V+ ++ EA GK + H Sbjct: 48 RELNHTWRHKNYATNVLSFPAD-VPDDMLDIPLLGDLVICVPVVNREAAEQGKSIDAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 107 HMVIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|289675769|ref|ZP_06496659.1| putative metalloprotease [Pseudomonas syringae pv. syringae FF5] gi|330895568|gb|EGH27876.1| metal-binding heat shock protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330976850|gb|EGH76881.1| metal-binding heat shock protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 166 Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 86/164 (52%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQIA E + DE R CE+ + + EL++ D Sbjct: 1 MLELDLQIASETSA-PDEARFRLWCEMGLRQ------------RSADSELTIRLVDETEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R + TNVLSFP D +LGD+V+ ++ EA GK + H Sbjct: 48 RELNNTWRHKNYATNVLSFPAD-VPDDMLDIPLLGDLVICVPVVNREAVEQGKSIDAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 107 HMVIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|74318722|ref|YP_316462.1| hypothetical protein Tbd_2704 [Thiobacillus denitrificans ATCC 25259] gi|123611152|sp|Q3SFF3|RRMF_THIDA RecName: Full=Probable rRNA maturation factor gi|74058217|gb|AAZ98657.1| Protein of unknown function UPF0054 [Thiobacillus denitrificans ATCC 25259] Length = 147 Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 74/157 (47%), Gaps = 15/157 (9%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L++AV+ A D++ R A A+ + E+++ D+ + LN Sbjct: 4 ELRLAVQFASGADDLPSRAQIRRWVAAALEH-----------DAEITVRIVDADEAQALN 52 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D NVL+F + GD+V+ ++E EA GK +H H+ + Sbjct: 53 RAYRDKDYVPNVLTFEYGEIAPALLG----GDVVICAPVVEREAREQGKPLGHHYAHMTV 108 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HG LHL GYDHVD DA ME E +IL+ I PY Sbjct: 109 HGVLHLQGYDHVDAADAERMETREAAILKRFHIPHPY 145 >gi|260574095|ref|ZP_05842100.1| protein of unknown function UPF0054 [Rhodobacter sp. SW2] gi|259023561|gb|EEW26852.1| protein of unknown function UPF0054 [Rhodobacter sp. SW2] Length = 168 Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 60/169 (35%), Positives = 74/169 (43%), Gaps = 19/169 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + E+ W D L A A + + L L+ D RI LN Sbjct: 5 VDTVYEDPRWQD------LNLATLADAAAQATLTAVGLDPQGFTLCLMGCDDARIAELNA 58 Query: 73 EYRGIDKPTNVLSFPTAF-------------ASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 +R + TNVLS+P+ LGDI +A+E EA G Sbjct: 59 AFRAKGQATNVLSWPSEDRAAEVPGGVPELPEPGTADDPEELGDIAIAWETCAREAAEQG 118 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K H+ HLI+HG LHLLGYDHVDD DA +ME E IL LGI DPY Sbjct: 119 KPQVAHVTHLIVHGVLHLLGYDHVDDADAELMETTEAGILAGLGIADPY 167 >gi|226951970|ref|ZP_03822434.1| metalloprotease [Acinetobacter sp. ATCC 27244] gi|226837308|gb|EEH69691.1| metalloprotease [Acinetobacter sp. ATCC 27244] Length = 161 Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 8/164 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + ++++ E+ L+ K + + F + E+ + D L Sbjct: 1 MKINLSLQQDFQTAELPLK---RGQIKKHIETALRHVGF--DADCEIGIACVDLAESHEL 55 Query: 71 NFEYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YR DKPTNVLSFP+ + LGD+V+ ++ EA K +H H Sbjct: 56 NLQYREKDKPTNVLSFPSDIPEKMLSLLDAEPLGDLVICMPVVLQEAKEQQKTPMDHFTH 115 Query: 129 LIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYEVD 171 L++HG LHLLGYDH + DA ME LE +IL+ L I +PY+ D Sbjct: 116 LLVHGILHLLGYDHETSESDAEEMEALEIAILKKLNIANPYQAD 159 >gi|147677227|ref|YP_001211442.1| putative metalloprotease [Pelotomaculum thermopropionicum SI] gi|189040627|sp|A5D3W2|RRMF_PELTS RecName: Full=Probable rRNA maturation factor gi|146273324|dbj|BAF59073.1| predicted metal-dependent hydrolase [Pelotomaculum thermopropionicum SI] Length = 152 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 4/132 (3%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS- 93 + +A ++ + E+SLVF D I LN +YRG+D PT+VLSF Sbjct: 21 LLTRAAQEVLKAEGYG--EEAEVSLVFVDDAYIHGLNRQYRGVDAPTDVLSFAMQEGEPL 78 Query: 94 -DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 G L+LGD+V++ + E +A G + +L +HG LHLLGYDH +++ +M Sbjct: 79 AGGEEELILGDVVISLQAAERQAGEYGHSLQREAAYLAVHGVLHLLGYDHQGEEERKIMR 138 Query: 153 GLERSILEDLGI 164 E +L L + Sbjct: 139 RKEEEVLGRLNL 150 >gi|332969607|gb|EGK08625.1| metal-dependent hydrolase [Kingella kingae ATCC 23330] Length = 170 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 5/170 (2%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M + + P L +Q + I+ + +V K I ELSLV Sbjct: 1 MKKQTKHFPFLRVQ---QQRFALAYINNSSANDVPSEKQFYQWIWHALKNFYRYAELSLV 57 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD--GCSSLMLGDIVLAYEIIEIEANVL 118 D N +YR D TNVLSF +++ GD+++ +++ EA Sbjct: 58 LLDEEAARQYNRDYRQKDYATNVLSFAHNEGEFSFVEQDNILRGDLIICPQVVAKEAAEQ 117 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 GK +H HL+IHG LHL+G+DH+ D +A ME LE +L L I +PY Sbjct: 118 GKSLHDHFAHLVIHGTLHLIGFDHIQDDEAEQMEQLETELLAQLRIANPY 167 >gi|146329108|ref|YP_001210119.1| hypothetical protein DNO_1243 [Dichelobacter nodosus VCS1703A] gi|172047331|sp|A5EXA5|RRMF_DICNV RecName: Full=Probable rRNA maturation factor gi|146232578|gb|ABQ13556.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A] Length = 155 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 56/154 (36%), Positives = 82/154 (53%), Gaps = 4/154 (2%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++ E + + + + +E+++ D+ I LN EY Sbjct: 4 IVIDYQTESIPDDWLYPAEWRIQRWLDCAL--TVLAIDEALEVTIRLVDNDEITELNAEY 61 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 RG + PTNVLSFP + + +LGDIV+A +I+ EA K+ E H H+ IHG Sbjct: 62 RGKNAPTNVLSFPCDWDLPE--EPRLLGDIVIAVQIVNQEAKAQKKKMEQHWAHMTIHGL 119 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 LHLL YDH+++K+A +ME LER+IL LG DPY Sbjct: 120 LHLLDYDHIEEKEAQIMEDLERTILAQLGFPDPY 153 >gi|28871921|ref|NP_794540.1| hypothetical protein PSPTO_4806 [Pseudomonas syringae pv. tomato str. DC3000] gi|37999558|sp|Q87VX9|RRMF_PSESM RecName: Full=Probable rRNA maturation factor gi|28855174|gb|AAO58235.1| conserved protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] Length = 166 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 85/164 (51%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQIA E DE R CE+ + + EL++ D Sbjct: 1 MLELDLQIASETPA-PDEARFRLWCEMGLRQ------------RSADSELTIRLVDETEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R + TNVLSFP D +LGD+V+ ++ EA GK + H Sbjct: 48 RELNHTWRHKNYATNVLSFPAD-VPDDMLDIPLLGDLVICVPVVNREAAEQGKSIDAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 107 HMVIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|221134936|ref|ZP_03561239.1| hypothetical protein GHTCC_08396 [Glaciecola sp. HTCC2999] Length = 162 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 61/161 (37%), Positives = 97/161 (60%), Gaps = 6/161 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+Q A+ E L + + K V+++++ +++ EL++ F DS ++L Sbjct: 8 IDIQWAISEPSQLSETQ-AQLSDDIIIKTVTSVLNN---HNDSVGELTIRFVDSVESQSL 63 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YR DKPTNVLSFP D S +LGD+++ +++ EA K +H HLI Sbjct: 64 NHTYRDKDKPTNVLSFPAEI--PDFIESTLLGDLIICDAVVKTEAKEQQKSLIHHYQHLI 121 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLG+DH+++ +A VME E ++L +LGI+DPY+VD Sbjct: 122 VHGTLHLLGFDHIENNEAVVMENHEIAVLNELGIDDPYQVD 162 >gi|39933523|ref|NP_945799.1| hypothetical protein RPA0446 [Rhodopseudomonas palustris CGA009] gi|59799039|sp|Q6NCM6|RRMF_RHOPA RecName: Full=Probable rRNA maturation factor gi|39647369|emb|CAE25890.1| Protein of unknown function UPF0054 [Rhodopseudomonas palustris CGA009] Length = 190 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 62/156 (39%), Positives = 84/156 (53%), Gaps = 6/156 (3%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 ++ +E W E A + + EL+++ TD I LN Sbjct: 33 EVVIEADCWQAEASAEATVLRAIETAADAVDADTGG-----AELAVMLTDDDHIRQLNAS 87 Query: 74 YRGIDKPTNVLSFPT-AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +RG DKPTNVLSFP + MLGDI +AY+ + EA+ GK F++HL HL +H Sbjct: 88 FRGKDKPTNVLSFPAAQPEVQPDGAPRMLGDIAIAYQTVRREADDEGKPFDHHLSHLAVH 147 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 GFLHL+GYDH +++A ME ER+IL LGI DPY Sbjct: 148 GFLHLVGYDHETEEEAEEMEDAERAILARLGIPDPY 183 >gi|170719818|ref|YP_001747506.1| putative metalloprotease [Pseudomonas putida W619] gi|229890245|sp|B1J201|RRMF_PSEPW RecName: Full=Probable rRNA maturation factor gi|169757821|gb|ACA71137.1| protein of unknown function UPF0054 [Pseudomonas putida W619] Length = 157 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 84/164 (51%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQ A +A D+ LR CE+ + + E+++ D Sbjct: 1 MLELDLQRAT-DAATPDDAALRAWCELALRQ------------RSADSEMTIRLVDEAEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN YR D TNVLSFP + +LGD+V+ ++E EA GK + H Sbjct: 48 RELNHTYRHKDYATNVLSFPAD-VPDELLDIPLLGDLVICVPVVEREAAEQGKSLQAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL+IHG LHLLGYDH++D +A ME LER +L +LG DPY D Sbjct: 107 HLVIHGCLHLLGYDHIEDDEAEEMEALERELLAELGHPDPYADD 150 >gi|87199002|ref|YP_496259.1| hypothetical protein Saro_0980 [Novosphingobium aromaticivorans DSM 12444] gi|123490218|sp|Q2G9P8|RRMF_NOVAD RecName: Full=Probable rRNA maturation factor gi|87134683|gb|ABD25425.1| protein of unknown function UPF0054 [Novosphingobium aromaticivorans DSM 12444] Length = 167 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 14/173 (8%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ P L++ I + +WGD I + + + +S+V D Sbjct: 1 MSAPILEMDI---DPVWGDAIDWEDIASRA----AEAAAKVAPELAHENLLVSVVLADDD 53 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLG 119 + LN ++R DKPTNVLSFP D + MLGD++LA+ + EA G Sbjct: 54 EVHALNKQWRAKDKPTNVLSFPMLSREEVLHAAADEGAPGMLGDMILAHGVCTREAAEKG 113 Query: 120 KEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYEVD 171 E H HL++HG LHL GYDH + +A ME LER L +GI DPY V+ Sbjct: 114 VSVETHATHLVVHGLLHLAGYDHELGEAEAEEMENLERKALALMGIADPYAVE 166 >gi|169832186|ref|YP_001718168.1| cytidine deaminase [Candidatus Desulforudis audaxviator MP104C] gi|169639030|gb|ACA60536.1| cytidine deaminase [Candidatus Desulforudis audaxviator MP104C] Length = 301 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 49/152 (32%), Positives = 75/152 (49%), Gaps = 8/152 (5%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 + + N D + + + +AV + ++ G VE+S+ D I LN + Sbjct: 3 VVINN--LQDTVPVDEHLMALITRAVESALAGG---DRRRVEVSVALVDDEYIHDLNRRF 57 Query: 75 RGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 RG D+PT+VLSFP D L+LGD+V++ +A G + + L + Sbjct: 58 RGQDRPTDVLSFPMGEEEPGAGDEPGVLLLGDVVISLPAAARQAAEYGHGLDREVARLAV 117 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 HG LHLLGYDH D+DA M+ E ++L LG Sbjct: 118 HGTLHLLGYDHEQDEDASRMQEREDAVLAVLG 149 >gi|298369902|ref|ZP_06981218.1| metalloprotease [Neisseria sp. oral taxon 014 str. F0314] gi|298281362|gb|EFI22851.1| metalloprotease [Neisseria sp. oral taxon 014 str. F0314] Length = 171 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 2/137 (1%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SD 94 K + ++SL+ D N +YRG D TNVLSF D Sbjct: 33 EKDFYRWAWLAVKQRYRRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPD 92 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 S + GD+++ +++ EA GK E H HL +HG LHL+GYDH++D DA ME L Sbjct: 93 QFSDGLCGDLIICPQVVFKEAAEQGKTAEQHFAHLTLHGTLHLMGYDHIEDHDAEEMEAL 152 Query: 155 ERSILEDLGINDPYEVD 171 E +++ L +PY D Sbjct: 153 EIRLMQALNYPNPYRED 169 >gi|153873752|ref|ZP_02002229.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152069781|gb|EDN67770.1| conserved hypothetical protein [Beggiatoa sp. PS] Length = 181 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 2/133 (1%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 K + + + + VEL++ D + LN ++R PTN+LSFP S Sbjct: 46 QKNNAPIPPFSFPRSISQVELTIRIVDDEEAKQLNEKWRQRPNPTNILSFPFE--SPLDL 103 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 +LGD+V+ ++ EA K + H HL+IHG LHLLGYDH++ ME E Sbjct: 104 EIPLLGDLVICASVVAREATEQYKSLDAHWAHLVIHGTLHLLGYDHIEIAQEQFMESTEI 163 Query: 157 SILEDLGINDPYE 169 IL DLG ++PY+ Sbjct: 164 CILYDLGYSNPYQ 176 >gi|296116297|ref|ZP_06834913.1| hypothetical protein GXY_10882 [Gluconacetobacter hansenii ATCC 23769] gi|295977116|gb|EFG83878.1| hypothetical protein GXY_10882 [Gluconacetobacter hansenii ATCC 23769] Length = 192 Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 84/164 (51%), Gaps = 14/164 (8%) Query: 12 DLQIAVENALWGDEIHLRTL-CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 D+ +++ W + + A+ L G +++V D + L Sbjct: 26 DIDVSITERRWHRAMPNPAREVQRAVRAAMRELDVSGA--------VTVVLADDLTVRRL 77 Query: 71 NFEYRGIDKPTNVLSF---PTAFASSDGCSSLML--GDIVLAYEIIEIEANVLGKEFENH 125 N +RG +KPTNVL+F P +A +D S + L GDI+LA+ +E EA G+ NH Sbjct: 78 NHLHRGRNKPTNVLTFEYAPADYAPTDSGSGIWLWGGDIILAFATVEREARAAGRSVRNH 137 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 ++HL++HG LHL GYDH DA ME E IL +GI +P++ Sbjct: 138 MMHLLVHGVLHLSGYDHHHAGDARAMEMEESRILGRMGIPNPWK 181 >gi|238795392|ref|ZP_04638907.1| metalloprotease [Yersinia mollaretii ATCC 43969] gi|238720511|gb|EEQ12312.1| metalloprotease [Yersinia mollaretii ATCC 43969] Length = 127 Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 46/116 (39%), Positives = 66/116 (56%), Gaps = 2/116 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++ D LN YRG DK TNVLSFP + +LGD+++ +++E EA Sbjct: 10 EVTIRLVDEAESHELNLTYRGKDKSTNVLSFPFE--APPEIELPLLGDLIICRQVVEQEA 67 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K H H+++HG LHLLGYDH+ D +A ME +E I++ LG DPY + Sbjct: 68 VEQEKALFAHWAHMVVHGSLHLLGYDHIVDDEAEEMESIETEIMQSLGYPDPYISE 123 >gi|83949575|ref|ZP_00958308.1| hypothetical protein ISM_00735 [Roseovarius nubinhibens ISM] gi|83837474|gb|EAP76770.1| hypothetical protein ISM_00735 [Roseovarius nubinhibens ISM] Length = 166 Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 58/168 (34%), Positives = 83/168 (49%), Gaps = 16/168 (9%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + + +E W L A+ + + E+SL+ D RI LN Sbjct: 5 VDVMIEAEGW------EALPLAALAERAAKATLGHLGLDAEDWEISLLACDDARIAGLNE 58 Query: 73 EYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 E+R +PTNVLS+P+ + LGDI +++E EA GK Sbjct: 59 EFRDKPRPTNVLSWPSEERGAETPGARPDLPEPGFDPELGDIAISWETCAAEARAAGKPV 118 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 E+H+ HLI+H LHLLGYDH+ D+DA +ME E IL +LG++DPY V Sbjct: 119 EDHVTHLIVHAVLHLLGYDHIRDQDATLMEAEEVVILGNLGLDDPYSV 166 >gi|329897208|ref|ZP_08271948.1| heat shock protein involved in translation [gamma proteobacterium IMCC3088] gi|328921363|gb|EGG28757.1| heat shock protein involved in translation [gamma proteobacterium IMCC3088] Length = 157 Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats. Identities = 59/160 (36%), Positives = 83/160 (51%), Gaps = 11/160 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ + V+ A GD + F + VS + + L DS+ I+ L Sbjct: 1 MNISVCVDRACGGDSPD-----DDSFRRWVSAALKA----CRKSGHVDLKIVDSNEIQYL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D TNVLSFP+ G S +LGD+ L +IE EA+ K +H HL Sbjct: 52 NKTYRGKDAATNVLSFPSEL--PPGIPSDLLGDLALCTPVIEREASEQRKVLMHHWAHLT 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 IHG LHL+G+DH++D DA +ME LE IL L + +PY Sbjct: 110 IHGTLHLIGFDHIEDTDAEIMESLEIDILASLSLPNPYVD 149 >gi|146308796|ref|YP_001189261.1| putative metalloprotease [Pseudomonas mendocina ymp] gi|166990901|sp|A4XYW3|RRMF_PSEMY RecName: Full=Probable rRNA maturation factor gi|145576997|gb|ABP86529.1| protein of unknown function UPF0054 [Pseudomonas mendocina ymp] Length = 151 Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 83/164 (50%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQ+A + DE LR CE+ + + EL++ D Sbjct: 1 MLELDLQLAS-DGQHPDEAQLRRWCELALRQRTA------------DSELTIRLVDEEEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R D TNVLSFP +LGD+V+ ++E EA GK E H Sbjct: 48 RELNRTWRHKDYATNVLSFPA-EIPDGILDIPLLGDLVICVPVLEREAAEQGKTLEAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL+IHG LHLLGYDH+++ +A ME LER +L +LG DPY D Sbjct: 107 HLVIHGCLHLLGYDHIEEDEALEMEELERQLLAELGHPDPYAGD 150 >gi|330953008|gb|EGH53268.1| metal-binding heat shock protein [Pseudomonas syringae Cit 7] Length = 166 Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 86/164 (52%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQIA E + DE R CE+ + + EL++ D Sbjct: 1 MLELDLQIASETSA-PDEARFRLWCEMGLRQ------------RSADSELTIRLVDETEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R + TNVLSFP D +LGD+V+ ++ EA GK + H Sbjct: 48 RELNHTWRHKNYATNVLSFPAD-VPDDMLDIPLLGDLVICVPVVNREAVEQGKSVDAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 107 HMVIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|165976379|ref|YP_001651972.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303251112|ref|ZP_07337298.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|165876480|gb|ABY69528.1| hypothetical protein APJL_0970 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302650122|gb|EFL80292.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 163 Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 87/166 (52%), Gaps = 8/166 (4%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P +DLQIA EN + + + A++ F E+++ D Sbjct: 1 MTTPMIDLQIACEN---SENLPSLEQLTLWVQTALAYEAQTEDF---PETEMTIRIVDEA 54 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP +G +LGD+V+ +++E E E+H Sbjct: 55 ESHELNLTYRGKDKPTNVLSFPFEV--PEGIELPLLGDLVICRQVVEKEVEEQQISLESH 112 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL IHG LHLLGYDH++D++A MEGLE I++ LG DPY + Sbjct: 113 WAHLAIHGTLHLLGYDHIEDEEAEEMEGLETEIMQKLGFADPYLSE 158 >gi|330944991|gb|EGH46777.1| metal-binding heat shock protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 166 Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 86/164 (52%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQIA E + DE R CE+ + + EL++ D Sbjct: 1 MLELDLQIASETSA-PDEARFRLWCEMGLRQ------------RSADSELTIRLVDETEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R + TNVLSFP D +LGD+V+ ++ EA GK + H Sbjct: 48 RELNNTWRHKNYATNVLSFPAD-VPDDMLDIPLLGDLVICVPVVNREAVEQGKSIDAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 107 HMVIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|238791655|ref|ZP_04635293.1| metalloprotease [Yersinia intermedia ATCC 29909] gi|238729271|gb|EEQ20787.1| metalloprotease [Yersinia intermedia ATCC 29909] Length = 120 Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats. Identities = 47/117 (40%), Positives = 67/117 (57%), Gaps = 2/117 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D LN YRG DKPTNVLSFP + +LGD+++ +++E E Sbjct: 2 AEVTVRLVDEAESHELNLTYRGKDKPTNVLSFPFE--APPEIELPLLGDLIICRQVVEQE 59 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 A K H H+++HG LHLLGYDH+ D +A ME +E I++ LG DPY + Sbjct: 60 AIEQEKALLAHWAHMVVHGSLHLLGYDHIVDDEAEEMESIETEIMQSLGYPDPYISE 116 >gi|330892982|gb|EGH25643.1| metal-binding heat shock protein [Pseudomonas syringae pv. mori str. 301020] Length = 161 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 87/164 (53%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQIA E + DE R CE+ + + EL++ D + Sbjct: 1 MLELDLQIASETSA-PDEARFRLWCEMGLRQ------------RSADSELTIRLVDENEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R + TNVLSFP D +LGD+V+ ++ EA GK + H Sbjct: 48 RELNHTWRHKNYATNVLSFPAD-VPDDMLDIPLLGDLVICVPVVNREAAEQGKSVDAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 107 HMVIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYAED 150 >gi|319779780|ref|YP_004139256.1| hypothetical protein Mesci_0031 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165668|gb|ADV09206.1| protein of unknown function UPF0054 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 166 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 74/157 (47%), Positives = 89/157 (56%), Gaps = 6/157 (3%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 D+ IAVE W DE L L + A + G ELSLVF+D I+ LN Sbjct: 15 DIDIAVEAGNWPDEASLTRLVDRAVKAAFAETGVAG------RSELSLVFSDDAHIQVLN 68 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +RG DKPTNVLSFP + G MLGDIVLA E + EA + K ENH+ HL+I Sbjct: 69 AGWRGKDKPTNVLSFPAFPFAQGGPLPPMLGDIVLAAETVAHEAVLEDKPVENHITHLVI 128 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HG LHLLGYDH + +A ME +ER+ L L I DPY Sbjct: 129 HGLLHLLGYDHETEAEAEAMEAVERAALARLAIPDPY 165 >gi|331014757|gb|EGH94813.1| metal-binding heat shock protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 166 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 85/164 (51%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQ+A E DE R CE+ + + EL++ D Sbjct: 1 MLELDLQVASETPA-PDEALFRLWCEMGLRQ------------RSADSELTIRLVDETEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R + TNVLSFP D +LGD+V+ ++ EA GK + H Sbjct: 48 RELNHTWRHKNYATNVLSFPAD-VPDDMLDIPLLGDLVICVPVVNREAAEQGKSIDAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 107 HMVIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|283784429|ref|YP_003364294.1| hypothetical protein ROD_06711 [Citrobacter rodentium ICC168] gi|282947883|emb|CBG87445.1| conserved hypothetical protein [Citrobacter rodentium ICC168] Length = 155 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 85/166 (51%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A EN + + A+ + E+++ D Sbjct: 1 MSQVILDLQLACENNA---GLPEEARFQTWLNAAIPQF--------QEEAEVTIRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA GK E H Sbjct: 50 ESHDLNLTYRGKDKPTNVLSFPFE--APPGIEMPLLGDLIICRQVVEQEAREQGKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153 >gi|319943042|ref|ZP_08017325.1| metal-dependent hydrolase [Lautropia mirabilis ATCC 51599] gi|319743584|gb|EFV95988.1| metal-dependent hydrolase [Lautropia mirabilis ATCC 51599] Length = 187 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 53/161 (32%), Positives = 74/161 (45%), Gaps = 18/161 (11%) Query: 10 RLDLQIAVENALWGDEIH-LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 RL LQI ++ + E+ R A+ EL L F Sbjct: 40 RLSLQIQFDDTVDPAELPASRPQLRRWVQAALEA-----------DAELVLRFVGREESR 88 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN +YRG D+ TNVL+F A ++ DIV+ +++ EA+ K NHL H Sbjct: 89 QLNHQYRGKDRSTNVLTFDYAHE------PVVQADIVICLPVLQDEAHTQNKPLRNHLAH 142 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 L+IHG LH G DH+ D++A ME E +L I+DPY Sbjct: 143 LVIHGVLHAHGMDHLTDEEAAEMESREIELLHRFRIDDPYR 183 >gi|323143880|ref|ZP_08078544.1| translation metalloprotein YbeY [Succinatimonas hippei YIT 12066] gi|322416352|gb|EFY07022.1| translation metalloprotein YbeY [Succinatimonas hippei YIT 12066] Length = 157 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 59/160 (36%), Positives = 85/160 (53%), Gaps = 11/160 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQ+A++ + L + E+ + + + E+++ S I+ L Sbjct: 5 IDLQVAID-----PKESLPDIDELTLWAKSALIGADY----HKDSEITVRIVASDEIQEL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N EYR D PTN+LSFP D +LGD+++ EI+ EA V K ++ H HLI Sbjct: 56 NREYRHKDCPTNILSFPFE--CPDVIDLPLLGDLIICDEIVRREAKVQEKTYKEHFAHLI 113 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +HG LHLLGYDH++ KDA ME LE I+ LG DPY Sbjct: 114 VHGCLHLLGYDHIEAKDAAKMEPLEVKIITKLGYPDPYGD 153 >gi|332975865|gb|EGK12743.1| metal-dependent hydrolase [Desmospora sp. 8437] Length = 157 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 62/126 (49%), Gaps = 4/126 (3%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS----DGCSS 98 L+ + E+++ D I LN EYR +D+PT+VLSFP Sbjct: 28 LMQAAETEQTPPAEVAVTIVDDEEIHRLNREYRQVDRPTDVLSFPQWEPGEEWGSPEGEP 87 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L LGDIV++ +A G E L L +HGFLHLLGYDH D++ M + +I Sbjct: 88 LPLGDIVISLPRAREQAAQYGHSLERELGFLAVHGFLHLLGYDHGTDEEEEEMFSRQEAI 147 Query: 159 LEDLGI 164 L +G+ Sbjct: 148 LSRVGL 153 >gi|237746579|ref|ZP_04577059.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gi|229377930|gb|EEO28021.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 176 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 30/172 (17%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 + D L + V + +++L F D+ LN +YRG D Sbjct: 12 QYPDPRFKDILTRQKLRRWVQASLQM-------PADITLRFVDAEEGRALNRDYRGKDYA 64 Query: 81 TNVLSFPTAFAS-----------------------SDGCSSLMLGDIVLAYEIIEIEANV 117 TNVL+FP + + DIVL +++E EA Sbjct: 65 TNVLTFPYDDMEAFDLSAIGLSGDDPAPLELTSLATSPGAQTARADIVLCTDVLEAEAKE 124 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 K + H HL++HG LH GYDH +D +A ME LE IL LG DPY Sbjct: 125 QAKSLDAHAAHLVVHGVLHAQGYDHTNDAEAGEMETLETKILAKLGYPDPYR 176 >gi|319940869|ref|ZP_08015208.1| hypothetical protein HMPREF9464_00427 [Sutterella wadsworthensis 3_1_45B] gi|319805751|gb|EFW02532.1| hypothetical protein HMPREF9464_00427 [Sutterella wadsworthensis 3_1_45B] Length = 152 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 17/153 (11%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 + L+ D++ R+ A+ E ++ F D LN ++R Sbjct: 10 QAGLFKDKLPHRSTMARWIRAALEL-----------DGEFTVRFVDEEEGRELNHQFRRK 58 Query: 78 DKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 D TNVL+F +++ DIV+ ++E +A K +HL HL+IHG LH Sbjct: 59 DYATNVLTFDYQRE------PVVMADIVICPAVLERQAAEQQKPLRDHLAHLLIHGVLHA 112 Query: 138 LGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 GYDH+DD++A VME E I+E LG +PY Sbjct: 113 QGYDHLDDEEAEVMEARETEIMESLGFPNPYSD 145 >gi|326386703|ref|ZP_08208324.1| hypothetical protein Y88_2596 [Novosphingobium nitrogenifigens DSM 19370] gi|326208756|gb|EGD59552.1| hypothetical protein Y88_2596 [Novosphingobium nitrogenifigens DSM 19370] Length = 164 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 59/170 (34%), Positives = 79/170 (46%), Gaps = 14/170 (8%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P L++ I + +W + L + + +SLV D Sbjct: 1 MTAPTLEIDI---DPVWSETTDWENLANAA----AQAAAKVAPELAHESMLVSLVLADDE 53 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLG 119 + LN ++R DKPTNVLSFP + MLGD++LA+ + EA G Sbjct: 54 EVHELNKQWRAKDKPTNVLSFPMLSREEVLSAAEAPDAPAMLGDLILAHGVCAREAVEKG 113 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPY 168 + H HLI+HG LHL GYDH + DA MEGLER L LGI DPY Sbjct: 114 VTQDAHTSHLIVHGLLHLAGYDHETGEADAEEMEGLERKALALLGIADPY 163 >gi|298293909|ref|YP_003695848.1| hypothetical protein Snov_3959 [Starkeya novella DSM 506] gi|296930420|gb|ADH91229.1| protein of unknown function UPF0054 [Starkeya novella DSM 506] Length = 172 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 84/158 (53%), Gaps = 2/158 (1%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ + VE W L A S Y + + E+++ TD I L Sbjct: 7 IEVDVLVEADAWSAFPEAAGLVIRAVDAACEGA-SSEYELDIDGAEIAVKLTDDASIRLL 65 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N ++RG D TNVLSFPT + G LGDI +A+E + EA GK F +HLVHL Sbjct: 66 NRDWRGKDYATNVLSFPTPEMARAGGDP-HLGDIAIAFETLAREAAEEGKPFADHLVHLA 124 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH +DA ME +ER +L LG+ DPY Sbjct: 125 VHGTLHLLGYDHEVAEDAEEMEAMERRVLAGLGVPDPY 162 >gi|94309396|ref|YP_582606.1| unkown domain/putative metalloprotease fusion protein [Cupriavidus metallidurans CH34] gi|93353248|gb|ABF07337.1| putative metal-dependent hydrolase [Cupriavidus metallidurans CH34] Length = 245 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 51/133 (38%), Positives = 66/133 (49%), Gaps = 7/133 (5%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 K + + + L++ F D TLN YRG D TNVL+F A D Sbjct: 116 RKQIEKWVKSALYAD---AALTVRFVDETEGRTLNRSYRGKDYATNVLTFAYAENDDD-- 170 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 + GDIVL ++E EA K E H HLI+HG LH GY+H DD +A ME +E Sbjct: 171 --PVAGDIVLCCPVVESEAKAQKKSLEAHYAHLIVHGVLHAQGYEHDDDTEAEEMEAIET 228 Query: 157 SILEDLGINDPYE 169 L+ LG DPY+ Sbjct: 229 ETLQALGFEDPYK 241 >gi|114331764|ref|YP_747986.1| hypothetical protein Neut_1787 [Nitrosomonas eutropha C91] gi|122313486|sp|Q0AF61|RRMF_NITEC RecName: Full=Probable rRNA maturation factor gi|114308778|gb|ABI60021.1| protein of unknown function UPF0054 [Nitrosomonas eutropha C91] Length = 141 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 51/138 (36%), Positives = 66/138 (47%), Gaps = 13/138 (9%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 +F K V + E+ + E LN ++RG D TNVL+F + Sbjct: 15 RQLFRKWVGAAL-------NKPAEIVIRIVGMQEGEVLNRKFRGKDSATNVLTFVYSDDV 67 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 LGDIVL +I EA K+ H HLI+HG LHL GYDH+ D+DA VME Sbjct: 68 PL------LGDIVLCAPVISREAEQQNKDLVAHYAHLIVHGVLHLQGYDHISDEDAVVME 121 Query: 153 GLERSILEDLGINDPYEV 170 LE I+ L DPY + Sbjct: 122 SLETKIITRLNYPDPYVI 139 >gi|238790780|ref|ZP_04634539.1| metalloprotease [Yersinia frederiksenii ATCC 33641] gi|238721138|gb|EEQ12819.1| metalloprotease [Yersinia frederiksenii ATCC 33641] Length = 127 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 46/117 (39%), Positives = 67/117 (57%), Gaps = 2/117 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D LN YRG DK TNVLSFP + +LGD+++ +++E E Sbjct: 9 AEVTIRLVDEAESHELNLTYRGKDKSTNVLSFPFE--APPEIELPLLGDLIICRQVVEQE 66 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 A K H H+++HG LHLLGYDH+ D +A ME +E I+++LG DPY + Sbjct: 67 AVEQDKALLAHWAHMVVHGSLHLLGYDHIVDDEAEEMESIETEIMQNLGYPDPYISE 123 >gi|294670470|ref|ZP_06735350.1| hypothetical protein NEIELOOT_02187 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307749|gb|EFE48992.1| hypothetical protein NEIELOOT_02187 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 172 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 66/138 (47%), Gaps = 3/138 (2%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--- 93 + + ++SL+ D N +YRG D TNVLSF + Sbjct: 33 ERDFYRWAWQAVKQHHRHADISLLLLDEEPARACNRDYRGKDYATNVLSFALDEGETMYA 92 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 S + GD+V+ +++ EA GK E H HL IHG LHL+GYDH++D +A ME Sbjct: 93 PALSDGLHGDLVICPQVVFKEAAEQGKTPEQHFAHLTIHGVLHLMGYDHIEDTEAEEMEA 152 Query: 154 LERSILEDLGINDPYEVD 171 LE +L L DPY D Sbjct: 153 LETRLLNQLAYPDPYSQD 170 >gi|240949197|ref|ZP_04753541.1| putative metalloprotease [Actinobacillus minor NM305] gi|240296313|gb|EER46957.1| putative metalloprotease [Actinobacillus minor NM305] Length = 163 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 88/166 (53%), Gaps = 8/166 (4%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + +P +DLQIA EN + + + A++ F E+++ D Sbjct: 1 MTIPMIDLQIACEN---SENLPSLEQLTLWVKTALAYEAQTEDF---PETEMTIRIVDEA 54 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP +G +LGD+V+ +++E E E+H Sbjct: 55 ESHELNLTYRGKDKPTNVLSFPFEV--PEGIELPLLGDLVICRQVVEKEVEEQQISLESH 112 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL IHG LHLLGYDH++D++A MEGLE I++ LG DPY + Sbjct: 113 WAHLAIHGTLHLLGYDHIEDEEAEEMEGLETEIMQKLGFADPYLSE 158 >gi|114778655|ref|ZP_01453471.1| Predicted metal-dependent hydrolase [Mariprofundus ferrooxydans PV-1] gi|114551120|gb|EAU53681.1| Predicted metal-dependent hydrolase [Mariprofundus ferrooxydans PV-1] Length = 159 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 58/156 (37%), Positives = 83/156 (53%), Gaps = 7/156 (4%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L I V++ L D + AV S F E + L + F + LN Sbjct: 6 LDIIVDDELAEDFTPPENIA-----AAVQAACSVAGFQNEPM--LCIRFAGDAEVRELNS 58 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 ++RG+D T+VLSFP S + LGDI LA ++ EA LG +H++HLI+H Sbjct: 59 QWRGLDCVTDVLSFPMQDDSDAIDPNQSLGDIALALPFVQQEAGRLGLPQADHILHLIVH 118 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 LHLL YDH+DD++A M+ LER ++ LG++DPY Sbjct: 119 ATLHLLDYDHIDDEEAAQMQQLERQAMQQLGLHDPY 154 >gi|255319764|ref|ZP_05360969.1| putative metalloprotease [Acinetobacter radioresistens SK82] gi|262380298|ref|ZP_06073452.1| metal-dependent hydrolase [Acinetobacter radioresistens SH164] gi|255303083|gb|EET82295.1| putative metalloprotease [Acinetobacter radioresistens SK82] gi|262297744|gb|EEY85659.1| metal-dependent hydrolase [Acinetobacter radioresistens SH164] Length = 159 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 8/164 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L ++++ E+ L+ K + + + + E+ + D + + L Sbjct: 1 MKLSLSLQQTFVAPELVLK---RAYLKKVIETTLR--HLDVKQDCEIGIACVDLDQSQQL 55 Query: 71 NFEYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N EYR DKPTNVLSFP+ ++ LGD+V+ ++ EA K H H Sbjct: 56 NLEYRRKDKPTNVLSFPSEIPEEILPMLAARPLGDLVICIPVVLQEAAEQQKVPVEHFTH 115 Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH D+DA ME LE IL LG+N+PY+ + Sbjct: 116 MLVHGTLHLLGYDHEISDEDADEMEALEIEILAKLGLNNPYQEE 159 >gi|71733514|ref|YP_276505.1| metalloprotease [Pseudomonas syringae pv. phaseolicola 1448A] gi|123635049|sp|Q48DN6|RRMF_PSE14 RecName: Full=Probable rRNA maturation factor gi|71554067|gb|AAZ33278.1| conserved hypothetical protein TIGR00043 [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322686|gb|EFW78779.1| putative metalloprotease [Pseudomonas syringae pv. glycinea str. B076] gi|320330529|gb|EFW86508.1| putative metalloprotease [Pseudomonas syringae pv. glycinea str. race 4] gi|330873683|gb|EGH07832.1| metal-binding heat shock protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 166 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 64/164 (39%), Positives = 88/164 (53%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQIA E + DE R CE+ + + EL++ D + Sbjct: 1 MLELDLQIASETSA-PDEARFRLWCEMGLRQ------------RSADSELTIRLVDENEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R + TNVLSFP A D +LGD+V+ ++ EA GK + H Sbjct: 48 RELNHTWRHKNYATNVLSFPAD-APDDMLDIPLLGDLVICVPVVNREAAEQGKSVDAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 107 HMVIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYAED 150 >gi|78484820|ref|YP_390745.1| hypothetical protein Tcr_0475 [Thiomicrospira crunogena XCL-2] gi|123555910|sp|Q31IF2|RRMF_THICR RecName: Full=Probable rRNA maturation factor gi|78363106|gb|ABB41071.1| Conserved hypothetical protein; UPF0054 [Thiomicrospira crunogena XCL-2] Length = 160 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 83/167 (49%), Gaps = 10/167 (5%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LD Q+A E E+ C A+ + + EL++ D I Sbjct: 1 MIHLDYQVAAEEVD-EAELPTYEQCLKWVEVALLD------DRLDGETELTIRIVDEDEI 53 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFAS---SDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 +TLN +YRG D+ TNVLSFP G +GD+V+ +++ EA K E Sbjct: 54 QTLNRDYRGKDQTTNVLSFPFENPPVLVDLGEELPYIGDLVICAQVVAQEAKAQHKPLEA 113 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H++IHG LHL G DHVDD +A ME LE IL DLG + PYE D Sbjct: 114 HWAHMVIHGCLHLQGMDHVDDDEAIKMEALEAEILADLGYDSPYESD 160 >gi|307822346|ref|ZP_07652578.1| protein of unknown function UPF0054 [Methylobacter tundripaludum SV96] gi|307736912|gb|EFO07757.1| protein of unknown function UPF0054 [Methylobacter tundripaludum SV96] Length = 153 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 14/161 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + +++Q E+A D+ ++ + E+ + D Sbjct: 1 MNNIEIQAVFESAGQPDQQQIQLWVDTALD------------DYGQDTEIVVRIVDEQES 48 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +YR PTN+LSFP +G +LGD+V+ ++E EA K +H Sbjct: 49 AELNEQYRHKSGPTNILSFPVDV--PEGIELDLLGDLVICAPVVEKEALEQDKLLAHHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H+I+HG LHLLGYDH+DD +A +ME E +IL L IN+PY Sbjct: 107 HIIVHGVLHLLGYDHIDDDEAELMENKEIAILNKLHINNPY 147 >gi|295695438|ref|YP_003588676.1| protein of unknown function UPF0054 [Bacillus tusciae DSM 2912] gi|295411040|gb|ADG05532.1| protein of unknown function UPF0054 [Bacillus tusciae DSM 2912] Length = 162 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 78/164 (47%), Gaps = 12/164 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +++ VE D + E + + + S+ E+S+V D RI Sbjct: 1 MNRVEVWVEQER--DAQGVPD-VERLLSAVLEEAASREGV---EAAEVSVVLVDDERIHE 54 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSD----GCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN +YRG+D+PT+VLSF + +LGDIV++ E E +AN G Sbjct: 55 LNRDYRGVDRPTDVLSFAMREGEGEPVQTEEGRELLGDIVISVETAERQANQYGHSLRRE 114 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI--NDP 167 L L +HGFLHLLGYDH + VM G + +L LG+ +P Sbjct: 115 LAFLAVHGFLHLLGYDHQSPEQERVMFGKQEEVLSALGLMRGNP 158 >gi|160872543|ref|ZP_02062675.1| conserved hypothetical protein [Rickettsiella grylli] gi|159121342|gb|EDP46680.1| conserved hypothetical protein [Rickettsiella grylli] Length = 157 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 72/170 (42%), Gaps = 16/170 (9%) Query: 1 MSVKKVNLPRLDL--QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELS 58 M K+N R+ + QI V N+ L+ + + ++ Sbjct: 1 MHKTKINEKRIKITLQIRVRNSFIPSRYFLKRWVHTALS------------GQTENNIVN 48 Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 + LN YR TN+LSFP +S LGD+VL I EA Sbjct: 49 IRLVTQKESAKLNTLYRHKKGATNILSFPFE--PPPQVTSPFLGDLVLCATHINQEAKQQ 106 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K H HLIIHG LHL+GYDH +A ME LE +L++LG +PY Sbjct: 107 QKTRLAHWAHLIIHGCLHLIGYDHAHRHEAVKMETLEIQLLKELGYENPY 156 >gi|86747718|ref|YP_484214.1| hypothetical protein RPB_0592 [Rhodopseudomonas palustris HaA2] gi|123004691|sp|Q2J2K7|RRMF_RHOP2 RecName: Full=Probable rRNA maturation factor gi|86570746|gb|ABD05303.1| Protein of unknown function UPF0054 [Rhodopseudomonas palustris HaA2] Length = 195 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 63/163 (38%), Positives = 83/163 (50%), Gaps = 11/163 (6%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 ++ + W E A + + + EL+++ TD I LN Sbjct: 33 EVVIAADCWRSEASAEATVLRAIEAAAAMVDA-----DTGEAELAVMLTDDDGIRALNAS 87 Query: 74 YRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 YRG DKPTNVLSFP G + +LGDI +AY+ + EA+ GK F++HL Sbjct: 88 YRGQDKPTNVLSFPAPQPDYQGAAQGSDVAPKLLGDIAIAYQTVRREADDEGKRFDHHLS 147 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HL +HGFLHL+GYDH D +A ME ER IL LGI DPY Sbjct: 148 HLAVHGFLHLVGYDHETDAEAETMEAAERRILAGLGIPDPYAD 190 >gi|270160107|ref|ZP_06188763.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|289165115|ref|YP_003455253.1| metal-dependent hydrolase [Legionella longbeachae NSW150] gi|269988446|gb|EEZ94701.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|288858288|emb|CBJ12156.1| putative metal-dependent hydrolase [Legionella longbeachae NSW150] Length = 158 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 76/132 (57%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 +++L S + EL++ + LN+ YR I+K TNVL+FP + Sbjct: 22 LTHLASLTLRDYKKEAELTIRLVTPEEMLQLNYTYRKINKTTNVLAFPCTLPTEVQLDYS 81 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGD+++ +++ E+ L K E+H ++IHG LHLLGYDH+ D DA +M+ +E +L Sbjct: 82 LLGDVIICPQVLLDESKQLNKTLESHWALIVIHGILHLLGYDHIKDDDAAIMQSIEIKLL 141 Query: 160 EDLGINDPYEVD 171 +LG +PY+ + Sbjct: 142 TELGFANPYDAE 153 >gi|238755073|ref|ZP_04616421.1| metalloprotease [Yersinia ruckeri ATCC 29473] gi|238706777|gb|EEP99146.1| metalloprotease [Yersinia ruckeri ATCC 29473] Length = 127 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 46/119 (38%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 E+++ D LN YRG DK TNVLSFP + +LGD+++ +++E Sbjct: 7 EESEVTIRVVDEAESHELNLTYRGKDKSTNVLSFPFE--APPEIELPLLGDLIICRQVVE 64 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA K H H+++HG LHLLGYDH+ D +A ME +E I++ LG DPY + Sbjct: 65 QEAVEQNKALLAHWAHMVVHGSLHLLGYDHIVDDEAEEMESIETEIMQGLGYPDPYISE 123 >gi|257482208|ref|ZP_05636249.1| putative metalloprotease [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625795|ref|ZP_06458749.1| putative metalloprotease [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648420|ref|ZP_06479763.1| putative metalloprotease [Pseudomonas syringae pv. aesculi str. 2250] gi|298489003|ref|ZP_07007026.1| predicted metal-dependent hydrolase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156501|gb|EFH97598.1| predicted metal-dependent hydrolase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330867191|gb|EGH01900.1| metal-binding heat shock protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330871079|gb|EGH05788.1| metal-binding heat shock protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|331011327|gb|EGH91383.1| metal-binding heat shock protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 166 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 87/164 (53%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQIA E + DE R CE+ + + EL++ D + Sbjct: 1 MLELDLQIASETSA-PDEARFRLWCEMGLRQ------------RSADSELTIRLVDENEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R + TNVLSFP D +LGD+V+ ++ EA GK + H Sbjct: 48 RELNHTWRHKNYATNVLSFPAD-VPDDMLDIPLLGDLVICVPVVNREAAEQGKSVDAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 107 HMVIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYAED 150 >gi|254450088|ref|ZP_05063525.1| conserved hypothetical protein TIGR00043 [Octadecabacter antarcticus 238] gi|198264494|gb|EDY88764.1| conserved hypothetical protein TIGR00043 [Octadecabacter antarcticus 238] Length = 156 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 52/124 (41%), Positives = 67/124 (54%), Gaps = 10/124 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA----------SSDGCSSLMLGDI 104 E+SL+ D RI LN ++R PTNVLS+P+ LGDI Sbjct: 32 FEISLLACDDARICVLNADFRQKGTPTNVLSWPSNERGAEADGDMPVQPQLPQDTELGDI 91 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++Y+ EA G F +H+ HLI+HG LHLLG+DH+ D D +MEGLE IL L I Sbjct: 92 AISYDTCAREAAQSGTPFADHVTHLIVHGTLHLLGFDHLRDLDGALMEGLETEILGKLDI 151 Query: 165 NDPY 168 DPY Sbjct: 152 ADPY 155 >gi|121603421|ref|YP_980750.1| hypothetical protein Pnap_0508 [Polaromonas naphthalenivorans CJ2] gi|145558831|sp|A1VJK1|RRMF_POLNA RecName: Full=Probable rRNA maturation factor gi|120592390|gb|ABM35829.1| protein of unknown function UPF0054 [Polaromonas naphthalenivorans CJ2] Length = 151 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 15/160 (9%) Query: 12 DLQIAVENALWGDE-IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L ++++ + D +H L A+ + + + ++ E+++ + + L Sbjct: 5 SLSLSLQFGKFPDAALHRAALPRHSVARWIRHAL-------QSDAEITVRIVGAEEGQAL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YR D TNVL+F A + D+VL ++ EA K + H HL+ Sbjct: 58 NRDYRAKDYATNVLTFDYTQA------PYVTADLVLCAPVVAKEAQDNQKTLQAHYAHLL 111 Query: 131 IHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 +HG LH GYDH ++DA ME LE IL LG ++PY Sbjct: 112 VHGTLHAQGYDHETGEEDAEEMEALEIEILAGLGFDNPYR 151 >gi|238762865|ref|ZP_04623833.1| metalloprotease [Yersinia kristensenii ATCC 33638] gi|238698876|gb|EEP91625.1| metalloprotease [Yersinia kristensenii ATCC 33638] Length = 130 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 47/116 (40%), Positives = 68/116 (58%), Gaps = 2/116 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++ D LN YRG DKPTNVLSFP + +LGD+++ +++E EA Sbjct: 13 EVTIRVVDEAESHELNLTYRGKDKPTNVLSFPFE--APPEIELPLLGDLIICRQVVEQEA 70 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K H H+++HG LHLLGYDH+ D +A ME +E I+++LG DPY + Sbjct: 71 VEQEKALLAHWAHMVVHGSLHLLGYDHIVDDEAEEMESIETEIMQNLGYPDPYISE 126 >gi|332799066|ref|YP_004460565.1| metalloprotease ybeY [Tepidanaerobacter sp. Re1] gi|332696801|gb|AEE91258.1| metalloprotease ybeY [Tepidanaerobacter sp. Re1] Length = 162 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 10/161 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++ + + N D+I + E + KAV+ IS +E+S+ D I+ Sbjct: 1 MANVNVVINN--LQDKIDVTQKLEELINKAVNTAISVEKV--SGDLEVSIALVDDEYIQK 56 Query: 70 LNFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 LN +YR +D+PT+VLSF S + +LGD+V++ E + +A G FE Sbjct: 57 LNRQYRSLDEPTDVLSFAMRETVFEEGGSFEFQEEELLGDVVISLERAKEQAVEYGHSFE 116 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + L++HG LHLLGYDH ++ VM E IL+ + + Sbjct: 117 REVGFLVVHGILHLLGYDHEVGEEKVVMRQREEEILKAIDL 157 >gi|296447883|ref|ZP_06889794.1| protein of unknown function UPF0054 [Methylosinus trichosporium OB3b] gi|296254624|gb|EFH01740.1| protein of unknown function UPF0054 [Methylosinus trichosporium OB3b] Length = 168 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 87/158 (55%), Gaps = 7/158 (4%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 + I V W + L L + V+ ++ ELS+ FTD I LN Sbjct: 4 SIDIIVTAPCWEQQTGLDELTQSTVRGCVAVTAARLA----QDCELSVNFTDDATIRELN 59 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 ++RGIDKPTNVLSF L LGDIV+A+E + EA+ GK FE HL HLII Sbjct: 60 AQWRGIDKPTNVLSF---ETPGPLARRLSLGDIVIAHETVAREADEQGKSFEAHLTHLII 116 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HGFLHL+GYDH ++A ME LER I LG+ DPYE Sbjct: 117 HGFLHLIGYDHQAAREAEEMEALERRIAATLGLADPYE 154 >gi|254437107|ref|ZP_05050601.1| conserved hypothetical protein TIGR00043 [Octadecabacter antarcticus 307] gi|198252553|gb|EDY76867.1| conserved hypothetical protein TIGR00043 [Octadecabacter antarcticus 307] Length = 156 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 58/162 (35%), Positives = 82/162 (50%), Gaps = 18/162 (11%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 +E+ W + L TL + A+S G ++ + E+S++ RI LN ++R Sbjct: 2 IEDDRW---LGLATLADRAAFAALS-----GVGLEASAFEISMLACGDTRISALNADFRQ 53 Query: 77 IDKPTNVLSFPTAFA----------SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 TNVLS+P++ LGDI ++Y+ I EA G +H+ Sbjct: 54 KGAATNVLSWPSSERGADVDGDMPVQPQVPQDTQLGDIAISYDTIAREAAQSGTPLVDHV 113 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HLI+HG LHLLG+DHV D D +MEGLE IL L I DPY Sbjct: 114 THLIVHGTLHLLGFDHVRDLDGALMEGLETEILGKLDIRDPY 155 >gi|144899563|emb|CAM76427.1| Uncharacterized protein family UPF005 [Magnetospirillum gryphiswaldense MSR-1] Length = 172 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 60/164 (36%), Positives = 86/164 (52%), Gaps = 8/164 (4%) Query: 10 RLDLQIAVENALWGDEIH-LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 +D+ I++E+ W + LC + + G VE+S+V T + Sbjct: 4 EIDVAISIEDEAWTQALPGAEELCRTMVLATLQAA---GGDFDGPPVEVSVVLTSDTAVH 60 Query: 69 TLNFEYRGIDKPTNVLSF---PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN ++RG DKPTNVLSF A + ++LGD+++AY + EA GK +H Sbjct: 61 ALNRDWRGQDKPTNVLSFAGLDDDEAPVVVGAPVLLGDVIMAYGVCTQEARDQGKTLAHH 120 Query: 126 LVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 HL++HG LHLLG+DH D+ +A ME LE IL GI DPY Sbjct: 121 AAHLVVHGTLHLLGWDHEEDETEAEEMERLETVILSGFGIADPY 164 >gi|126730911|ref|ZP_01746720.1| hypothetical protein SSE37_13898 [Sagittula stellata E-37] gi|126708627|gb|EBA07684.1| hypothetical protein SSE37_13898 [Sagittula stellata E-37] Length = 178 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 76/171 (44%), Gaps = 23/171 (13%) Query: 16 AVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYR 75 VE+ W + + E++++ RI LN ++R Sbjct: 6 IVEDDRWEAAGLAALAEAA------AQETLAQLGFVADDYEIAVMGCSDGRIAILNADFR 59 Query: 76 GIDKPTNVLSFP-----------------TAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 G PTNVLS+P LGD+ LA+E E EA Sbjct: 60 GRPAPTNVLSWPTQELTSPDAGGDPFLPHLDDDFEAMGEPHHLGDLALAWETCEREAAEQ 119 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 K +H+ HL++HG LHL+GYDH+ D DA +MEGLER IL +LGI DPY Sbjct: 120 DKSMADHVTHLLVHGVLHLMGYDHIRDADATLMEGLERGILGNLGIADPYR 170 >gi|237798428|ref|ZP_04586889.1| metal-binding heat shock protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021280|gb|EGI01337.1| metal-binding heat shock protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 166 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 85/164 (51%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQ+A E + E R CE+ + + EL++ D Sbjct: 1 MLELDLQVASETSA-PSEAQFRLWCEMGLRQ------------RSADSELTVRLVDETEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R D TNVLSFP D +LGD+V+ ++ EA GK + H Sbjct: 48 RELNHTWRHKDYATNVLSFPAD-VPDDMLDIPLLGDLVICVPVVNREAAEQGKSIDAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 107 HMVIHGCLHLLGYDHLDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|297539315|ref|YP_003675084.1| hypothetical protein M301_2139 [Methylotenera sp. 301] gi|297258662|gb|ADI30507.1| protein of unknown function UPF0054 [Methylotenera sp. 301] Length = 145 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 49/161 (30%), Positives = 73/161 (45%), Gaps = 17/161 (10%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L +AV+ A +++ R+ + A+ E ++ D Sbjct: 1 MPTLNLAVQYASTLNDLPSRSQFRLWAKAAIRV-----------DTEAAIRIVDEAEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG D TNVL+FP ++GDI++ ++ EA K E H HL Sbjct: 50 LNKAYRGKDYATNVLTFPLTEE------PHLMGDIIICAPVVAAEALAQNKPLEAHYAHL 103 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +HG LHL GYDH + A +ME LE +I+ LG +PY + Sbjct: 104 TVHGILHLHGYDHEVEAQAELMESLETAIITKLGYANPYLI 144 >gi|145558828|sp|Q1LR89|RRMF_RALME RecName: Full=Probable rRNA maturation factor Length = 197 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 51/133 (38%), Positives = 66/133 (49%), Gaps = 7/133 (5%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 K + + + L++ F D TLN YRG D TNVL+F A D Sbjct: 68 RKQIEKWVKSALYAD---AALTVRFVDETEGRTLNRSYRGKDYATNVLTFAYAENDDD-- 122 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 + GDIVL ++E EA K E H HLI+HG LH GY+H DD +A ME +E Sbjct: 123 --PVAGDIVLCCPVVESEAKAQKKSLEAHYAHLIVHGVLHAQGYEHDDDTEAEEMEAIET 180 Query: 157 SILEDLGINDPYE 169 L+ LG DPY+ Sbjct: 181 ETLQALGFEDPYK 193 >gi|269139974|ref|YP_003296675.1| hypothetical protein ETAE_2629 [Edwardsiella tarda EIB202] gi|267985635|gb|ACY85464.1| hypothetical protein ETAE_2629 [Edwardsiella tarda EIB202] gi|304559807|gb|ADM42471.1| heat shock protein [Edwardsiella tarda FL6-60] Length = 157 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQIA E E E V + + E+++ D Sbjct: 1 MSNIILDLQIACVETPGLPAEGDFLRWLEAVLPR------------FRDEAEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG D+PTNVLSFP + G +LGD+V+ +++E EA + Sbjct: 49 AESHELNLTYRGKDRPTNVLSFPFE--APPGIELPLLGDMVICRQVVEREAQEQNIAPLS 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH+ D++A ME LE I++ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHISDEEAEEMESLEADIMQALGYPDPYAAE 153 >gi|77461173|ref|YP_350680.1| putative metalloprotease [Pseudomonas fluorescens Pf0-1] gi|123603159|sp|Q3K6B5|RRMF_PSEPF RecName: Full=Probable rRNA maturation factor gi|77385176|gb|ABA76689.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 164 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 84/164 (51%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQIA E E R CE+ + + E+++ D Sbjct: 1 MLELDLQIATEAPA-PTEAEFRQWCELALRQRTA------------DSEMTIRLVDEDEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R D TNVLSFP + +LGD+V+ ++E EA GKE + H Sbjct: 48 RELNHTWRHKDYATNVLSFPA-EVPDEFLDIPLLGDLVICVAVVEREATEQGKELKAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL+IHG LHLLGYDH+DD++A ME LER +L +LG DPY D Sbjct: 107 HLVIHGCLHLLGYDHIDDEEAEEMEALERELLAELGYPDPYADD 150 >gi|291612931|ref|YP_003523088.1| hypothetical protein Slit_0460 [Sideroxydans lithotrophicus ES-1] gi|291583043|gb|ADE10701.1| protein of unknown function UPF0054 [Sideroxydans lithotrophicus ES-1] Length = 152 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 65/162 (40%), Gaps = 21/162 (12%) Query: 7 NLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 + L +Q A R + + V++SL + Sbjct: 9 HKLSLSVQYASNAGKLPTRQQFRRWAKAALER---------------DVQISLRLVNEAE 53 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 TLN ++RG D TNVL+F GD+V+ ++ EA GK+ H Sbjct: 54 GRTLNRDFRGKDYATNVLTFVYDDTVPLS------GDVVICVPVVAREAKEQGKDLFAHY 107 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL+IH LHL GYDH +DA ME E +++ L PY Sbjct: 108 AHLVIHAVLHLQGYDHEKKRDAEKMEARETALMLKLRYPAPY 149 >gi|91789935|ref|YP_550887.1| hypothetical protein Bpro_4096 [Polaromonas sp. JS666] gi|123164394|sp|Q124Q3|RRMF_POLSJ RecName: Full=Probable rRNA maturation factor gi|91699160|gb|ABE45989.1| protein of unknown function UPF0054 [Polaromonas sp. JS666] Length = 154 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 14/140 (10%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 L + +S+ + + E+++ D+ ++LN +YR D TNVL+F Sbjct: 28 ALPRRRVQRWISHAL-------KTDAEITVRIVDAEEGQSLNRDYRRKDYATNVLTFDY- 79 Query: 90 FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DA 148 ++ D+VL ++E EA GK E H HL++H LH GYDH ++ DA Sbjct: 80 -----TREPVVTADLVLCAPVVEREAREQGKTLEAHYAHLLVHATLHAQGYDHETNERDA 134 Query: 149 CVMEGLERSILEDLGINDPY 168 ME LE +L L +PY Sbjct: 135 LEMEALEILLLASLRFANPY 154 >gi|15604575|ref|NP_221093.1| putative metalloprotease [Rickettsia prowazekii str. Madrid E] gi|2073493|emb|CAA72455.1| hypothetical protein [Rickettsia prowazekii] gi|3861270|emb|CAA15169.1| unknown [Rickettsia prowazekii] Length = 180 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 12/169 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++++I W + + + V L+ F K ELS++ T++ I T Sbjct: 14 MINVEIIRNYNKWREHRKINKGLIKKITQNV--LVRFDNFSKIKQFELSILLTNTAEILT 71 Query: 70 LNFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 LN ++R I+K TNVLSFP + LGDI YE+I E+ Sbjct: 72 LNQQFRSIEKATNVLSFPNNELNWHNLYSKLEFLYYSDYMHLGDIAFCYEVIYNESCEQQ 131 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K FENH +H++IH LHL+G+DH +D DA +ME LE IL GI PY Sbjct: 132 KTFENHFIHMLIHSILHLIGFDHQNDTDANIMESLEIEILSYFGIPSPY 180 >gi|170767743|ref|ZP_02902196.1| conserved hypothetical protein [Escherichia albertii TW07627] gi|170123231|gb|EDS92162.1| conserved hypothetical protein [Escherichia albertii TW07627] Length = 155 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E+ E E F ++ +I + + E+++ D+ Sbjct: 1 MSQVILDLQLACEDNSGQPE-------ESQFQTWLNAVIPQF----QEESEVTIRLVDTA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +LN YRG DKPTNVLSFP G +LGD+V+ +++E EA GK E H Sbjct: 50 ESHSLNLTYRGKDKPTNVLSFPFEV--PPGMEMSLLGDLVICRQVVEQEALEQGKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153 >gi|114766587|ref|ZP_01445543.1| hypothetical protein 1100011001317_R2601_08751 [Pelagibaca bermudensis HTCC2601] gi|114541203|gb|EAU44255.1| hypothetical protein R2601_08751 [Roseovarius sp. HTCC2601] Length = 160 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 51/126 (40%), Positives = 71/126 (56%), Gaps = 7/126 (5%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-------DGCSSLMLG 102 + E++++ D RI LN ++R KPTNVLS+P+ + LG Sbjct: 34 LDPERFEIAVLACDDARIAELNGDFRAKPKPTNVLSWPSEERDPEEPPEGGEDGMPEELG 93 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DI +A+E EA GK ++H+ HL++H LHLLGYDH+ D +A VME LE IL + Sbjct: 94 DIAIAWETCAREAAEQGKPLDHHITHLMVHATLHLLGYDHISDAEATVMETLETEILGKM 153 Query: 163 GINDPY 168 GI DPY Sbjct: 154 GIEDPY 159 >gi|332527513|ref|ZP_08403565.1| hypothetical protein RBXJA2T_16287 [Rubrivivax benzoatilyticus JA2] gi|332111920|gb|EGJ11898.1| hypothetical protein RBXJA2T_16287 [Rubrivivax benzoatilyticus JA2] Length = 147 Score = 117 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 44/117 (37%), Positives = 60/117 (51%), Gaps = 6/117 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 E+ +++ D TLN +YRG D TNVL+F ++ D+VL ++ Sbjct: 34 ESNGRIAVRIVDEDEGRTLNRDYRGKDYATNVLTFDYEHEPE------VVADLVLCAPVV 87 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E EA G E H HL++HG LH G+DH DD +A ME E +L LG DPY Sbjct: 88 EREAAEQGVTLEAHYAHLLVHGTLHAQGWDHEDDGEAEAMEARETELLAALGFADPY 144 >gi|290968420|ref|ZP_06559959.1| metalloprotein, YbeY/ UPF0054 family [Megasphaera genomosp. type_1 str. 28L] gi|290781416|gb|EFD94005.1| metalloprotein, YbeY/ UPF0054 family [Megasphaera genomosp. type_1 str. 28L] Length = 157 Score = 117 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 10/157 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ I E A + + E + + S + E+S++ + I L Sbjct: 1 MNITITYEEASFQ-----QDAYEKIITRVCSEAALVYGLGPK--AEISILLCHNEYIHAL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIEIEANVLGKEFENHLV 127 N +YR ID+PT+VLSF DG LGDI+++ E + +A G FE L Sbjct: 54 NKQYRHIDRPTDVLSFALNEGEDDGYDGPDTALLGDIIISLEKVAEQAAEYGHSFERELA 113 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +L IHG LH+LGYDH++ +D M G E IL LG Sbjct: 114 YLTIHGMLHILGYDHMEPEDKAEMRGEEEFILRRLGY 150 >gi|121595993|ref|YP_987889.1| hypothetical protein Ajs_3702 [Acidovorax sp. JS42] gi|145558816|sp|A1WC38|RRMF_ACISJ RecName: Full=Probable rRNA maturation factor gi|120608073|gb|ABM43813.1| protein of unknown function UPF0054 [Acidovorax sp. JS42] Length = 152 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 17/164 (10%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 +N L LQ A + L A+ + + ++ E+++ + Sbjct: 3 LNQLSLSLQFARDAEATAHRATLP---RHAVARWIRHALAV-------DAEITVRIVGAE 52 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 + LN E+R D TNVL+F + + D+VL ++E EA K E H Sbjct: 53 EGQRLNREFRHKDYATNVLTFDYQQE------PVAVADLVLCAPVVEREAREQNKTLEEH 106 Query: 126 LVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPY 168 HL++HG LH G+DH ++DA ME E +IL++LG DPY Sbjct: 107 YAHLLVHGTLHAQGWDHETSEQDAQEMEAYETAILQELGFADPY 150 >gi|293607163|ref|ZP_06689505.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292814497|gb|EFF73636.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 160 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 46/123 (37%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 46 KGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIV 105 K V + ELSL + LN ++R D TNVL+F + + GDIV Sbjct: 36 KDGLVDFSAAELSLRLVGAAEGRRLNRDFRQRDYATNVLTFEYGVDPAG----VARGDIV 91 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++ EA K H HL IHG LH LGYDH+ +DA M+ LE + L +GI Sbjct: 92 MCVPVLVREAREQRKPLLEHAAHLTIHGVLHSLGYDHIKARDAKRMDALETATLAQMGIA 151 Query: 166 DPY 168 DPY Sbjct: 152 DPY 154 >gi|262274720|ref|ZP_06052531.1| predicted metal-dependent hydrolase [Grimontia hollisae CIP 101886] gi|262221283|gb|EEY72597.1| predicted metal-dependent hydrolase [Grimontia hollisae CIP 101886] Length = 154 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 91/160 (56%), Gaps = 13/160 (8%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 DLQIA +N D + T + F +AV + E+++ D ++LN Sbjct: 6 DLQIATQNT---DNLPTDTQFQQWFEQAVQSF--------REQAEVTIRLVDEEESQSLN 54 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +YRG DKPTNVLSFP + G +LGD+V+ +++E EA K+ H H+++ Sbjct: 55 RDYRGKDKPTNVLSFPFD--APPGIELDLLGDLVICRQVVEKEAEEQNKDLFAHWAHMVV 112 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HG LHLLGYDH++D++A ME LE SI+ LG ++PY D Sbjct: 113 HGSLHLLGYDHINDEEAEEMESLEISIMNALGFDNPYAAD 152 >gi|261855782|ref|YP_003263065.1| hypothetical protein Hneap_1182 [Halothiobacillus neapolitanus c2] gi|261836251|gb|ACX96018.1| protein of unknown function UPF0054 [Halothiobacillus neapolitanus c2] Length = 161 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 5/124 (4%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-----GCSSLMLGDIVLA 107 V L++ F D +LN +YR TNVLSF G + LGD+++ Sbjct: 38 QSVALTVRFVDEEEGLSLNQQYRHKKYATNVLSFSYDAPELPEDMASGDEPVYLGDLLIC 97 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 ++ EA K H HL++HG LHLLGYDH +A ME +E ++ LG +P Sbjct: 98 MPVVLNEAASQNKIPATHTAHLVVHGVLHLLGYDHEASAEADQMEQIEVDAMQKLGFENP 157 Query: 168 YEVD 171 Y D Sbjct: 158 YSAD 161 >gi|146284075|ref|YP_001174228.1| putative metalloprotease [Pseudomonas stutzeri A1501] gi|166232639|sp|A4VQY5|RRMF_PSEU5 RecName: Full=Probable rRNA maturation factor gi|145572280|gb|ABP81386.1| predicted metal-dependent hydrolase [Pseudomonas stutzeri A1501] gi|327482392|gb|AEA85702.1| putative metalloprotease [Pseudomonas stutzeri DSM 4166] Length = 160 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 55/163 (33%), Positives = 78/163 (47%), Gaps = 14/163 (8%) Query: 10 RLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 ++L + L+ CE+ + + EL++ D Sbjct: 1 MIELDLQCASTGAAPAAADLQRWCELALRQ------------RSGDSELTIRLVDEEEGR 48 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN +R D TNVLSFP + +LGD+V+ ++E EA GK + H H Sbjct: 49 ELNRTWRQKDYATNVLSFPAD-VPDEFLDIPLLGDLVICVPVVEREAAEQGKTLDAHWAH 107 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 L+IHG LHLLGYDH++D +A ME LER +L +LG DPY D Sbjct: 108 LVIHGCLHLLGYDHIEDAEAEEMEALERQLLAELGHPDPYAED 150 >gi|325276220|ref|ZP_08142019.1| metal-binding heat shock protein [Pseudomonas sp. TJI-51] gi|324098649|gb|EGB96696.1| metal-binding heat shock protein [Pseudomonas sp. TJI-51] Length = 157 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 83/164 (50%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LD+Q A + A + R CE+ + + E+++ D Sbjct: 1 MLELDIQRATDAAA-PSDDDFRRWCELALRQ------------RSADSEMTIRLVDEAEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN YR D TNVLSFP D +LGD+V+ ++E EA GK H Sbjct: 48 RELNHTYRHKDYATNVLSFPAD-VPDDLLDIPLLGDLVICVAVVEREAAEQGKALNAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL+IHG LHLLGYDH+DD++A MEGLER +L +LG DPY D Sbjct: 107 HLVIHGCLHLLGYDHIDDEEAEEMEGLERELLAELGHPDPYADD 150 >gi|194439895|ref|ZP_03071958.1| conserved hypothetical protein [Escherichia coli 101-1] gi|253774357|ref|YP_003037188.1| metalloprotease [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160738|ref|YP_003043846.1| putative metalloprotease [Escherichia coli B str. REL606] gi|300907838|ref|ZP_07125454.1| hypothetical protein HMPREF9536_05750 [Escherichia coli MS 84-1] gi|300931596|ref|ZP_07146908.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 187-1] gi|301302142|ref|ZP_07208275.1| hypothetical protein HMPREF9347_00710 [Escherichia coli MS 124-1] gi|194421189|gb|EDX37213.1| conserved hypothetical protein [Escherichia coli 101-1] gi|242376433|emb|CAQ31135.1| conserved protein involved in translation [Escherichia coli BL21(DE3)] gi|253325401|gb|ACT30003.1| protein of unknown function UPF0054 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972639|gb|ACT38310.1| hypothetical protein ECB_00627 [Escherichia coli B str. REL606] gi|253976833|gb|ACT42503.1| hypothetical protein ECD_00627 [Escherichia coli BL21(DE3)] gi|300400470|gb|EFJ84008.1| hypothetical protein HMPREF9536_05750 [Escherichia coli MS 84-1] gi|300460620|gb|EFK24113.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 187-1] gi|300842694|gb|EFK70454.1| hypothetical protein HMPREF9347_00710 [Escherichia coli MS 124-1] gi|315255034|gb|EFU35002.1| putative metalloprotease YbeY [Escherichia coli MS 85-1] gi|323963227|gb|EGB58795.1| hypothetical protein ERGG_00413 [Escherichia coli H489] gi|332342006|gb|AEE55340.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 155 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E+ E E F ++ +I + + E+++ D+ Sbjct: 1 MSQVILDLQLACEDNSGLPE-------ESQFQTWLNAVIPQF----QKESEVTIRVVDTA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +LN YRG DKPTNVLSFP G +LGD+V+ +++E EA GK E H Sbjct: 50 ESHSLNLTYRGKDKPTNVLSFPFEV--PPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153 >gi|163857969|ref|YP_001632267.1| putative metalloprotease [Bordetella petrii DSM 12804] gi|226701660|sp|A9I000|RRMF_BORPD RecName: Full=Probable rRNA maturation factor gi|163261697|emb|CAP43999.1| conserved hypothetical protein [Bordetella petrii] Length = 155 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 46/114 (40%), Positives = 56/114 (49%), Gaps = 4/114 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 ELSL LN YR D TNVL+F GDIV+ ++ E Sbjct: 45 AELSLRLVGQAEGRRLNHAYRERDYATNVLTFEYGTDPLG----TARGDIVICVPVLARE 100 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A GK +H HL +HG LH LGYDH+ +DA ME LE +IL + I DPY Sbjct: 101 AREQGKTLLDHAAHLTVHGVLHALGYDHIKARDARRMEALETAILTGMRIADPY 154 >gi|294637488|ref|ZP_06715774.1| putative metalloprotease [Edwardsiella tarda ATCC 23685] gi|291089320|gb|EFE21881.1| putative metalloprotease [Edwardsiella tarda ATCC 23685] Length = 157 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQIA ++ E E V + + E+++ D Sbjct: 1 MSNIILDLQIACDDAPGLPAEGDFLRWLEAVLPR------------FRDEAEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG D+PTNVLSFP + +LGD+V+ +++E+EA + Sbjct: 49 AESHELNLTYRGKDRPTNVLSFPFE--APPEIELPLLGDMVICRQVVELEAQQQNITPLS 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH+ D++A ME LE I++ LG DPY + Sbjct: 107 HWAHMVVHGALHLLGYDHISDEEAEEMESLEADIMQALGYPDPYAAE 153 >gi|330505000|ref|YP_004381869.1| putative metalloprotease [Pseudomonas mendocina NK-01] gi|328919286|gb|AEB60117.1| putative metalloprotease [Pseudomonas mendocina NK-01] Length = 159 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 14/161 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQ+A + DE LR CE+ + + EL++ D Sbjct: 1 MLELDLQLAT-DGQHPDEAQLRRWCELALRQRTA------------DSELTIRLVDEAEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R D TNVLSFP +LGD+V+ ++E EA GK + H Sbjct: 48 RELNHTWRHKDYATNVLSFPA-EIPDGILDIPLLGDLVICVPVVEREAAEQGKALDAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL+IHG LHLLGYDH+++ +A ME LER +L +LG DPY Sbjct: 107 HLVIHGCLHLLGYDHIEEDEALEMEELERQLLAELGHPDPY 147 >gi|223041409|ref|ZP_03611612.1| putative metal-dependent hydrolase [Actinobacillus minor 202] gi|190692223|gb|ACE87879.1| putative metal-dependent hydrolase [Actinobacillus minor 202] Length = 163 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 87/166 (52%), Gaps = 8/166 (4%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P +DLQIA EN + + + A++ F E+++ D Sbjct: 1 MTTPIIDLQIACEN---SENLPSLEQFMLWVQTALAYEAQTEEF---PETEMTIRIVDEA 54 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP +G +LGD+V+ +++E E E+H Sbjct: 55 ESHELNLTYRGKDKPTNVLSFPFEV--PEGIELPLLGDLVICRQVVEKEVEEQQISLESH 112 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL IHG LHLLGYDH++D++A MEGLE I++ LG DPY + Sbjct: 113 WAHLAIHGTLHLLGYDHIEDEEAEEMEGLETEIMQKLGFADPYLSE 158 >gi|194434467|ref|ZP_03066728.1| conserved hypothetical protein [Shigella dysenteriae 1012] gi|194417318|gb|EDX33426.1| conserved hypothetical protein [Shigella dysenteriae 1012] gi|320178450|gb|EFW53418.1| putative metalloprotease [Shigella boydii ATCC 9905] gi|332094331|gb|EGI99382.1| hypothetical protein SB521682_0667 [Shigella boydii 5216-82] gi|332096773|gb|EGJ01763.1| hypothetical protein SD15574_0958 [Shigella dysenteriae 155-74] Length = 155 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E+ E E F ++ +I + + E+++ D+ Sbjct: 1 MSQVILDLQLACEDNSGLPE-------ESQFQTWLNAVIPQF----QEESEVTVRVVDTA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +LN YRG DKPTNVLSFP G +LGD+V+ +++E EA GK E H Sbjct: 50 ESHSLNLTYRGKDKPTNVLSFPFEV--PPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153 >gi|313895824|ref|ZP_07829378.1| translation metalloprotein YbeY [Selenomonas sp. oral taxon 137 str. F0430] gi|312975249|gb|EFR40710.1| translation metalloprotein YbeY [Selenomonas sp. oral taxon 137 str. F0430] Length = 154 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 11/159 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +++ I+ + +E+ + E +AV + G E+S+ T+ I Sbjct: 1 MMEITISAQ----PEELCIAPGDEAAVRRAVETV---GRLYGAEGAEVSVTLTNDAYIHE 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +N +YRG+D+PT+V+SF + D + +LGD+V++ E +A G + Sbjct: 54 INRQYRGVDRPTDVISFALMESEEPEILDDPAGDVLGDLVISLERARAQAEEYGHSYLRE 113 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L +HG LHLLGYDH++D + ME +R ++E LGI Sbjct: 114 LSFLTVHGMLHLLGYDHMEDAERAEMEEEQRHVMEALGI 152 >gi|239817628|ref|YP_002946538.1| hypothetical protein Vapar_4667 [Variovorax paradoxus S110] gi|239804205|gb|ACS21272.1| protein of unknown function UPF0054 [Variovorax paradoxus S110] Length = 152 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 7/116 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 E+++ D+ + LN E+RG D TNVL+F + +++ D+VL ++ Sbjct: 41 DAEITVRIVDAEEGQRLNREFRGKDYATNVLTFDYTQS------PMVMADLVLCAPVVAS 94 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPY 168 EA K H HL++HG LH G+DH + DA ME E IL LGI +PY Sbjct: 95 EAKEQRKTLAAHYAHLLVHGTLHAQGWDHETGEADAEAMEAREIEILAGLGIRNPY 150 >gi|330987618|gb|EGH85721.1| metal-binding heat shock protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 166 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 61/164 (37%), Positives = 86/164 (52%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQIA E + D+ R CE+ + + EL++ D + Sbjct: 1 MLELDLQIASETSA-PDKARFRLWCEMGLRQ------------RSADSELTIRLVDENEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R + TNVLSFP D +LGD+V+ ++ EA GK + H Sbjct: 48 RELNHTWRHKNYATNVLSFPAD-VPDDMLDIPLLGDLVICVPVVNREAAEQGKSVDAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH+DD++A ME LER++LE+LG PY D Sbjct: 107 HMVIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPAPYAED 150 >gi|300920524|ref|ZP_07136950.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 115-1] gi|300412463|gb|EFJ95773.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 115-1] Length = 155 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E+ E E F ++ +I + + E+++ D+ Sbjct: 1 MSQLILDLQLACEDNSGLPE-------ESQFQTWLNAVIPQF----QEESEVTIRVVDTA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +LN YRG DKPTNVLSFP G +LGD+V+ +++E EA GK E H Sbjct: 50 ESHSLNLTYRGKDKPTNVLSFPFEV--PPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153 >gi|187730605|ref|YP_001879332.1| putative metalloprotease [Shigella boydii CDC 3083-94] gi|238691682|sp|B2TU61|RRMF_SHIB3 RecName: Full=Probable rRNA maturation factor YbeY gi|187427597|gb|ACD06871.1| conserved hypothetical protein [Shigella boydii CDC 3083-94] Length = 155 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E+ E E F ++ +I + + E+++ D+ Sbjct: 1 MSQVILDLQLACEDNSGLPE-------ESQFQTWLNAVIPQF----QEESEVTIRVVDTA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +LN YRG DKPTNVLSFP G +LGD+V+ +++E EA GK E H Sbjct: 50 ESHSLNLTYRGKDKPTNVLSFPFEV--PPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMEALETKIMLALGYEDPYIAE 153 >gi|300927234|ref|ZP_07142966.1| hypothetical protein HMPREF9548_05209 [Escherichia coli MS 182-1] gi|301329191|ref|ZP_07222182.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 78-1] gi|300416800|gb|EFK00111.1| hypothetical protein HMPREF9548_05209 [Escherichia coli MS 182-1] gi|300844479|gb|EFK72239.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 78-1] Length = 155 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 63/166 (37%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A EN E E F ++ +I + + E+++ D+ Sbjct: 1 MSQVILDLQLACENNSGLPE-------ESQFQTWLNAVIPQF----QEESEVTIRVVDTA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +LN YRG DKPTNVLSFP G +LGD+V+ +++E EA GK E H Sbjct: 50 ESHSLNLTYRGKDKPTNVLSFPFEV--PPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153 >gi|329296078|ref|ZP_08253414.1| hypothetical protein Pstas_04461 [Plautia stali symbiont] Length = 157 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 89/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A DE L E F + + ++ + E+++ D Sbjct: 1 MSTVILDLQLAC-----ADENGLP--AEAAFQRWLEAAVTPF----QPESEVTIRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA GK E H Sbjct: 50 ESHELNLTYRGKDKPTNVLSFPFE--APPGIELPLLGDLIICRQVVEQEAAEQGKSPEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D++A ME LE I+ LG DPY + Sbjct: 108 WAHMVVHGTLHLLGYDHIEDEEAEEMEALETEIMLALGYPDPYISE 153 >gi|319761297|ref|YP_004125234.1| hypothetical protein Alide_0577 [Alicycliphilus denitrificans BC] gi|317115858|gb|ADU98346.1| protein of unknown function UPF0054 [Alicycliphilus denitrificans BC] Length = 150 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 14/140 (10%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 L A+ + + ++ E+++ S LN E+R D TNVL+F Sbjct: 22 ALPRHKVARWIRHALAV-------DAEITVRIVGSEEGRRLNREFRRKDYATNVLTFDYQ 74 Query: 90 FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDA 148 +L D+VL ++E EA GK + H HL++HG LH G+DH ++DA Sbjct: 75 QE------PTVLADLVLCAPVVEREAREQGKTLQEHYAHLLVHGALHAQGWDHETGEQDA 128 Query: 149 CVMEGLERSILEDLGINDPY 168 ME E I+ +LG DPY Sbjct: 129 QEMEAYETEIMRELGFADPY 148 >gi|16128642|ref|NP_415192.1| metal-binding heat shock protein required for rRNA maturation [Escherichia coli str. K-12 substr. MG1655] gi|24112043|ref|NP_706553.1| putative metalloprotease [Shigella flexneri 2a str. 301] gi|30062154|ref|NP_836325.1| putative metalloprotease [Shigella flexneri 2a str. 2457T] gi|74311195|ref|YP_309614.1| putative metalloprotease [Shigella sonnei Ss046] gi|82543103|ref|YP_407050.1| metalloprotease [Shigella boydii Sb227] gi|89107528|ref|AP_001308.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110] gi|91209702|ref|YP_539688.1| putative metalloprotease [Escherichia coli UTI89] gi|110804693|ref|YP_688213.1| putative metalloprotease [Shigella flexneri 5 str. 8401] gi|157156781|ref|YP_001461830.1| putative metalloprotease [Escherichia coli E24377A] gi|157160147|ref|YP_001457465.1| putative metalloprotease [Escherichia coli HS] gi|170020984|ref|YP_001725938.1| putative metalloprotease [Escherichia coli ATCC 8739] gi|170080339|ref|YP_001729659.1| hypothetical protein ECDH10B_0728 [Escherichia coli str. K-12 substr. DH10B] gi|188492875|ref|ZP_03000145.1| conserved hypothetical protein [Escherichia coli 53638] gi|191168675|ref|ZP_03030455.1| conserved hypothetical protein [Escherichia coli B7A] gi|193063449|ref|ZP_03044539.1| conserved hypothetical protein [Escherichia coli E22] gi|193069038|ref|ZP_03049996.1| conserved hypothetical protein [Escherichia coli E110019] gi|194429738|ref|ZP_03062254.1| conserved hypothetical protein [Escherichia coli B171] gi|209917921|ref|YP_002292005.1| putative metalloprotease [Escherichia coli SE11] gi|218549764|ref|YP_002383555.1| metalloprotease [Escherichia fergusonii ATCC 35469] gi|218553201|ref|YP_002386114.1| putative metalloprotease [Escherichia coli IAI1] gi|218557590|ref|YP_002390503.1| metalloprotease [Escherichia coli S88] gi|218694098|ref|YP_002401765.1| putative metalloprotease [Escherichia coli 55989] gi|237707372|ref|ZP_04537853.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|238899936|ref|YP_002925732.1| hypothetical protein BWG_0530 [Escherichia coli BW2952] gi|256020611|ref|ZP_05434476.1| putative metalloprotease [Shigella sp. D9] gi|256023730|ref|ZP_05437595.1| putative metalloprotease [Escherichia sp. 4_1_40B] gi|260842885|ref|YP_003220663.1| hypothetical protein ECO103_0666 [Escherichia coli O103:H2 str. 12009] gi|260853910|ref|YP_003227801.1| hypothetical protein ECO26_0734 [Escherichia coli O26:H11 str. 11368] gi|260866807|ref|YP_003233209.1| hypothetical protein ECO111_0689 [Escherichia coli O111:H- str. 11128] gi|291281608|ref|YP_003498426.1| hypothetical protein G2583_0822 [Escherichia coli O55:H7 str. CB9615] gi|293413953|ref|ZP_06656602.1| metalloprotease ybeY [Escherichia coli B185] gi|293418772|ref|ZP_06661207.1| metalloprotease ybeY [Escherichia coli B088] gi|300817820|ref|ZP_07098034.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 107-1] gi|300823023|ref|ZP_07103157.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 119-7] gi|300937872|ref|ZP_07152665.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 21-1] gi|300951161|ref|ZP_07165024.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 116-1] gi|300959235|ref|ZP_07171310.1| hypothetical protein HMPREF9547_04899 [Escherichia coli MS 175-1] gi|301028857|ref|ZP_07192033.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 196-1] gi|301643925|ref|ZP_07243952.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 146-1] gi|307137275|ref|ZP_07496631.1| putative metalloprotease [Escherichia coli H736] gi|307312624|ref|ZP_07592256.1| protein of unknown function UPF0054 [Escherichia coli W] gi|309795472|ref|ZP_07689889.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 145-7] gi|312970736|ref|ZP_07784917.1| uncharacterized family UPF0054 family protein [Escherichia coli 1827-70] gi|331641162|ref|ZP_08342297.1| putative metalloprotease YbeY [Escherichia coli H736] gi|331651672|ref|ZP_08352691.1| putative metalloprotease YbeY [Escherichia coli M718] gi|331667014|ref|ZP_08367888.1| putative metalloprotease YbeY [Escherichia coli TA271] gi|331672192|ref|ZP_08372984.1| putative metalloprotease YbeY [Escherichia coli TA280] gi|331676321|ref|ZP_08377033.1| putative metalloprotease YbeY [Escherichia coli H591] gi|332281801|ref|ZP_08394214.1| conserved hypothetical protein [Shigella sp. D9] gi|62906654|sp|P0A898|RRMF_ECOLI RecName: Full=Probable rRNA maturation factor YbeY gi|62906655|sp|P0A899|RRMF_SHIFL RecName: Full=Probable rRNA maturation factor YbeY gi|122424610|sp|Q1REQ7|RRMF_ECOUT RecName: Full=Probable rRNA maturation factor YbeY gi|122957569|sp|Q0T6R8|RRMF_SHIF8 RecName: Full=Probable rRNA maturation factor YbeY gi|123560316|sp|Q324N6|RRMF_SHIBS RecName: Full=Probable rRNA maturation factor YbeY gi|123617771|sp|Q3Z4D3|RRMF_SHISS RecName: Full=Probable rRNA maturation factor YbeY gi|166919068|sp|A7ZJ51|RRMF_ECO24 RecName: Full=Probable rRNA maturation factor YbeY gi|166919069|sp|A7ZXS8|RRMF_ECOHS RecName: Full=Probable rRNA maturation factor YbeY gi|189041073|sp|B1IYE9|RRMF_ECOLC RecName: Full=Probable rRNA maturation factor YbeY gi|226704001|sp|B6HYM8|RRMF_ECOSE RecName: Full=Probable rRNA maturation factor YbeY gi|226710475|sp|B7MFS5|RRMF_ECO45 RecName: Full=Probable rRNA maturation factor YbeY gi|226710477|sp|B7M5I6|RRMF_ECO8A RecName: Full=Probable rRNA maturation factor YbeY gi|226710480|sp|B7LKU5|RRMF_ESCF3 RecName: Full=Probable rRNA maturation factor YbeY gi|229485211|sp|B1X654|RRMF_ECODH RecName: Full=Probable rRNA maturation factor YbeY gi|254807365|sp|B7L9K6|RRMF_ECO55 RecName: Full=Probable rRNA maturation factor YbeY gi|259710207|sp|C4ZWE6|RRMF_ECOBW RecName: Full=Probable rRNA maturation factor YbeY gi|56554600|pdb|1XM5|A Chain A, Crystal Structure Of Metal-Dependent Hydrolase Ybey From E. Coli, Pfam Upf0054 gi|56554601|pdb|1XM5|B Chain B, Crystal Structure Of Metal-Dependent Hydrolase Ybey From E. Coli, Pfam Upf0054 gi|56554602|pdb|1XM5|C Chain C, Crystal Structure Of Metal-Dependent Hydrolase Ybey From E. Coli, Pfam Upf0054 gi|56554603|pdb|1XM5|D Chain D, Crystal Structure Of Metal-Dependent Hydrolase Ybey From E. Coli, Pfam Upf0054 gi|1778578|gb|AAB40861.1| HI0004 homolog [Escherichia coli] gi|1786880|gb|AAC73760.1| metal-binding heat shock protein required for rRNA maturation [Escherichia coli str. K-12 substr. MG1655] gi|4062278|dbj|BAA35314.1| conserved hypothetical protein [Escherichia coli str. K12 substr. W3110] gi|24050866|gb|AAN42260.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30040399|gb|AAP16131.1| hypothetical protein S0645 [Shigella flexneri 2a str. 2457T] gi|73854672|gb|AAZ87379.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81244514|gb|ABB65222.1| conserved hypothetical protein [Shigella boydii Sb227] gi|91071276|gb|ABE06157.1| hypothetical protein UTI89_C0657 [Escherichia coli UTI89] gi|110614241|gb|ABF02908.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|157065827|gb|ABV05082.1| conserved hypothetical protein [Escherichia coli HS] gi|157078811|gb|ABV18519.1| conserved hypothetical protein [Escherichia coli E24377A] gi|169755912|gb|ACA78611.1| protein of unknown function UPF0054 [Escherichia coli ATCC 8739] gi|169888174|gb|ACB01881.1| conserved protein [Escherichia coli str. K-12 substr. DH10B] gi|188488074|gb|EDU63177.1| conserved hypothetical protein [Escherichia coli 53638] gi|190901267|gb|EDV61036.1| conserved hypothetical protein [Escherichia coli B7A] gi|192931033|gb|EDV83637.1| conserved hypothetical protein [Escherichia coli E22] gi|192957582|gb|EDV88027.1| conserved hypothetical protein [Escherichia coli E110019] gi|194412219|gb|EDX28525.1| conserved hypothetical protein [Escherichia coli B171] gi|209776878|gb|ACI86751.1| hypothetical protein ECs0697 [Escherichia coli] gi|209776884|gb|ACI86754.1| hypothetical protein ECs0697 [Escherichia coli] gi|209911180|dbj|BAG76254.1| conserved hypothetical protein [Escherichia coli SE11] gi|218350830|emb|CAU96526.1| putative metal-dependent hydrolase [Escherichia coli 55989] gi|218357305|emb|CAQ89940.1| putative metal-dependent hydrolase [Escherichia fergusonii ATCC 35469] gi|218359969|emb|CAQ97513.1| putative metal-dependent hydrolase [Escherichia coli IAI1] gi|218364359|emb|CAR02034.1| putative metal-dependent hydrolase [Escherichia coli S88] gi|226898582|gb|EEH84841.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|238860283|gb|ACR62281.1| conserved protein [Escherichia coli BW2952] gi|257752559|dbj|BAI24061.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368] gi|257758032|dbj|BAI29529.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009] gi|257763163|dbj|BAI34658.1| conserved predicted protein [Escherichia coli O111:H- str. 11128] gi|260450174|gb|ACX40596.1| protein of unknown function UPF0054 [Escherichia coli DH1] gi|281600007|gb|ADA72991.1| putative metal-dependent hydrolase [Shigella flexneri 2002017] gi|284920459|emb|CBG33520.1| conserved hypothetical protein [Escherichia coli 042] gi|290761481|gb|ADD55442.1| conserved hypothetical protein [Escherichia coli O55:H7 str. CB9615] gi|291325300|gb|EFE64715.1| metalloprotease ybeY [Escherichia coli B088] gi|291434011|gb|EFF06984.1| metalloprotease ybeY [Escherichia coli B185] gi|294491060|gb|ADE89816.1| conserved hypothetical protein [Escherichia coli IHE3034] gi|299878162|gb|EFI86373.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 196-1] gi|300314164|gb|EFJ63948.1| hypothetical protein HMPREF9547_04899 [Escherichia coli MS 175-1] gi|300449564|gb|EFK13184.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 116-1] gi|300457115|gb|EFK20608.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 21-1] gi|300524372|gb|EFK45441.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 119-7] gi|300529517|gb|EFK50579.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 107-1] gi|301077695|gb|EFK92501.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 146-1] gi|306907326|gb|EFN37831.1| protein of unknown function UPF0054 [Escherichia coli W] gi|307627910|gb|ADN72214.1| putative metalloprotease [Escherichia coli UM146] gi|308120847|gb|EFO58109.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 145-7] gi|309700897|emb|CBJ00194.1| conserved hypothetical protein [Escherichia coli ETEC H10407] gi|310337385|gb|EFQ02523.1| uncharacterized family UPF0054 family protein [Escherichia coli 1827-70] gi|313649695|gb|EFS14119.1| uncharacterized family UPF0054 family protein [Shigella flexneri 2a str. 2457T] gi|315059913|gb|ADT74240.1| conserved protein [Escherichia coli W] gi|315135325|dbj|BAJ42484.1| hypothetical protein ECDH1ME8569_0628 [Escherichia coli DH1] gi|315287092|gb|EFU46506.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 110-3] gi|315616420|gb|EFU97037.1| uncharacterized family UPF0054 family protein [Escherichia coli 3431] gi|320174709|gb|EFW49841.1| putative metalloprotease [Shigella dysenteriae CDC 74-1112] gi|320183047|gb|EFW57912.1| putative metalloprotease [Shigella flexneri CDC 796-83] gi|320198215|gb|EFW72819.1| putative metalloprotease [Escherichia coli EC4100B] gi|320638109|gb|EFX07873.1| metal-binding heat shock protein [Escherichia coli O157:H7 str. G5101] gi|320643513|gb|EFX12683.1| metal-binding heat shock protein [Escherichia coli O157:H- str. 493-89] gi|320648848|gb|EFX17475.1| metal-binding heat shock protein [Escherichia coli O157:H- str. H 2687] gi|320654432|gb|EFX22479.1| metal-binding heat shock protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660114|gb|EFX27644.1| metal-binding heat shock protein [Escherichia coli O55:H7 str. USDA 5905] gi|320664912|gb|EFX32047.1| metal-binding heat shock protein [Escherichia coli O157:H7 str. LSU-61] gi|323153614|gb|EFZ39862.1| hypothetical protein ECEPECA14_4414 [Escherichia coli EPECa14] gi|323158886|gb|EFZ44897.1| hypothetical protein ECE128010_4803 [Escherichia coli E128010] gi|323170784|gb|EFZ56434.1| hypothetical protein ECLT68_4849 [Escherichia coli LT-68] gi|323179862|gb|EFZ65419.1| hypothetical protein ECOK1180_1271 [Escherichia coli 1180] gi|323379523|gb|ADX51791.1| protein of unknown function UPF0054 [Escherichia coli KO11] gi|323938420|gb|EGB34674.1| hypothetical protein ERCG_00456 [Escherichia coli E1520] gi|323943073|gb|EGB39232.1| hypothetical protein ERDG_00410 [Escherichia coli E482] gi|323945134|gb|EGB41196.1| hypothetical protein EREG_03318 [Escherichia coli H120] gi|323952770|gb|EGB48638.1| hypothetical protein ERKG_00543 [Escherichia coli H252] gi|323958412|gb|EGB54118.1| hypothetical protein ERLG_00402 [Escherichia coli H263] gi|323967605|gb|EGB63021.1| hypothetical protein ERJG_01183 [Escherichia coli M863] gi|323972113|gb|EGB67327.1| hypothetical protein ERHG_01926 [Escherichia coli TA007] gi|323976359|gb|EGB71449.1| hypothetical protein ERFG_02795 [Escherichia coli TW10509] gi|324006278|gb|EGB75497.1| hypothetical protein HMPREF9532_04037 [Escherichia coli MS 57-2] gi|324016066|gb|EGB85285.1| hypothetical protein HMPREF9542_05327 [Escherichia coli MS 117-3] gi|324114780|gb|EGC08748.1| hypothetical protein ERIG_00774 [Escherichia fergusonii B253] gi|324116733|gb|EGC10648.1| hypothetical protein ERBG_03409 [Escherichia coli E1167] gi|325498162|gb|EGC96021.1| metal-binding heat shock protein required for rRNA maturation [Escherichia fergusonii ECD227] gi|327254343|gb|EGE65965.1| hypothetical protein ECSTEC7V_0796 [Escherichia coli STEC_7v] gi|331037960|gb|EGI10180.1| putative metalloprotease YbeY [Escherichia coli H736] gi|331049950|gb|EGI22008.1| putative metalloprotease YbeY [Escherichia coli M718] gi|331066238|gb|EGI38122.1| putative metalloprotease YbeY [Escherichia coli TA271] gi|331070659|gb|EGI42022.1| putative metalloprotease YbeY [Escherichia coli TA280] gi|331076379|gb|EGI47661.1| putative metalloprotease YbeY [Escherichia coli H591] gi|332097751|gb|EGJ02725.1| hypothetical protein SB359474_0560 [Shigella boydii 3594-74] gi|332104153|gb|EGJ07499.1| conserved hypothetical protein [Shigella sp. D9] gi|332760969|gb|EGJ91257.1| hypothetical protein SF434370_0836 [Shigella flexneri 4343-70] gi|332761159|gb|EGJ91445.1| hypothetical protein SF274771_0770 [Shigella flexneri 2747-71] gi|332763338|gb|EGJ93578.1| hypothetical protein SFK671_0733 [Shigella flexneri K-671] gi|332768237|gb|EGJ98422.1| conserved protein involved in translation [Shigella flexneri 2930-71] gi|333007427|gb|EGK26907.1| hypothetical protein SFVA6_1074 [Shigella flexneri VA-6] gi|333008105|gb|EGK27581.1| hypothetical protein SFK218_0936 [Shigella flexneri K-218] gi|333010075|gb|EGK29510.1| hypothetical protein SFK272_0934 [Shigella flexneri K-272] gi|333020906|gb|EGK40166.1| hypothetical protein SFK227_0890 [Shigella flexneri K-227] gi|333021512|gb|EGK40762.1| hypothetical protein SFK304_0840 [Shigella flexneri K-304] Length = 155 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E+ E E F ++ +I + + E+++ D+ Sbjct: 1 MSQVILDLQLACEDNSGLPE-------ESQFQTWLNAVIPQF----QEESEVTIRVVDTA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +LN YRG DKPTNVLSFP G +LGD+V+ +++E EA GK E H Sbjct: 50 ESHSLNLTYRGKDKPTNVLSFPFEV--PPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153 >gi|294085155|ref|YP_003551915.1| putative metal-dependent hydrolase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664730|gb|ADE39831.1| Predicted metal-dependent hydrolase [Candidatus Puniceispirillum marinum IMCC1322] Length = 240 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 57/173 (32%), Positives = 78/173 (45%), Gaps = 22/173 (12%) Query: 13 LQIAVENALWGDEI--HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + I ++ W + ++ + +A+S +SL+ +I L Sbjct: 38 IDIMTDHDCWSAAMLGDVKAHFCQILDRALSA-------HDMKDCAVSLLLCSDAKIRQL 90 Query: 71 NFEYRGIDKPTNVLSFP-------------TAFASSDGCSSLMLGDIVLAYEIIEIEANV 117 N ++RGIDK TNVLSFP + LGDI +AY I EA Sbjct: 91 NHDHRGIDKATNVLSFPAADDDDMPYAMGAMDADDDNAPQRQELGDIAIAYGICAREAEE 150 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +H+ HL HG LHLLGYDH D +A ME LE S+LE LGI +PY Sbjct: 151 SSIRISDHITHLFGHGVLHLLGYDHDQDAEADAMEALEISLLEALGIANPYVD 203 >gi|330823171|ref|YP_004386474.1| metalloprotease ybeY [Alicycliphilus denitrificans K601] gi|329308543|gb|AEB82958.1| metalloprotease ybeY [Alicycliphilus denitrificans K601] Length = 150 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 14/140 (10%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 L A+ + + ++ E+++ S LN E+R D TNVL+F Sbjct: 22 ALPRHKVARWIRHALAV-------DAEITVRIVGSEEGRRLNREFRRKDYATNVLTFDYQ 74 Query: 90 FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDA 148 +L D+VL ++E EA GK + H HL++HG LH G+DH ++DA Sbjct: 75 QE------PTVLADLVLCAPVVEREAREQGKTLQEHYAHLLVHGALHAQGWDHETGEQDA 128 Query: 149 CVMEGLERSILEDLGINDPY 168 ME E I+ +LG DPY Sbjct: 129 QEMEAYETEIMRELGFADPY 148 >gi|149926994|ref|ZP_01915252.1| hypothetical protein LMED105_09072 [Limnobacter sp. MED105] gi|149824215|gb|EDM83435.1| hypothetical protein LMED105_09072 [Limnobacter sp. MED105] Length = 165 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 9/160 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + +A++ A+ D + + + ++++ + LN Sbjct: 9 VSVAIQWAMQADHPPFSEVDNSRIRRWAKACF-------MDRADITIRMVGEEEGQQLNR 61 Query: 73 EYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 ++RG D TNVL+FP D + + DIV+ ++E EA GK+ +HL HLI Sbjct: 62 DFRGKDYATNVLTFPMDMPDLGADSGLPVFMADIVICPAVVEREALEQGKDPIDHLAHLI 121 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +HG LH GY H D A +ME E IL+ I++PY + Sbjct: 122 VHGCLHAQGYVHESDNQAELMENREIEILKRFKISNPYVI 161 >gi|330960149|gb|EGH60409.1| metal-binding heat shock protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 166 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 85/164 (51%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQ+A E E LR CE+ + + EL++ D Sbjct: 1 MLELDLQVASETPA-PREDQLRLWCEMGLRQ------------RSADSELTIRLVDETEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R D TNVLSFP D +LGD+V+ ++ EA GK + H Sbjct: 48 RELNHTWRHKDYATNVLSFPAD-VPDDMLDIPLLGDLVICVPVVNREAAEQGKLIDAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 107 HMVIHGCLHLLGYDHLDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|90022942|ref|YP_528769.1| lipoate-protein ligase B [Saccharophagus degradans 2-40] gi|123090090|sp|Q21FH2|RRMF_SACD2 RecName: Full=Probable rRNA maturation factor gi|89952542|gb|ABD82557.1| protein of unknown function UPF0054 [Saccharophagus degradans 2-40] Length = 149 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 10/159 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L + I + ++ E+ A+ + N ELS+ D + Sbjct: 1 MLTIDIQQASTADASQLPSDKQFEIWVEAALQQ--------RMNEAELSIRIVDEDESQA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG DK TNVLSFP DG +LGD+V+ +++ EA GK H H+ Sbjct: 53 LNLQYRGKDKSTNVLSFPCEL--PDGVELPLLGDLVICAQVVAKEALEQGKLLHAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME +E +L +LG +PY Sbjct: 111 VVHGTLHLLGYDHIEDGEAEEMEAIEIQVLLELGYPNPY 149 >gi|138896065|ref|YP_001126518.1| putative metalloprotease [Geobacillus thermodenitrificans NG80-2] gi|196248958|ref|ZP_03147658.1| protein of unknown function UPF0054 [Geobacillus sp. G11MC16] gi|166228371|sp|A4IR19|RRMF_GEOTN RecName: Full=Probable rRNA maturation factor gi|134267578|gb|ABO67773.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] gi|196211834|gb|EDY06593.1| protein of unknown function UPF0054 [Geobacillus sp. G11MC16] Length = 156 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 14/161 (8%) Query: 11 LDLQI-AVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + +QI ++ + TL +++ A + +G E+S+ F D+ RI Sbjct: 1 MTIQIDFIDETNEVTAEQIETLEQLIREAAAVENVPEG-------AEVSVSFVDNERIRV 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFE 123 +N +YRG D PT+VLSF +LGDI+++ + +A G F Sbjct: 54 MNRDYRGKDAPTDVLSFALEEEGEGEIDIIGADVPPVLGDIIISIPKAKEQAAEYGHSFM 113 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L +HGFLHLLGYDH +++ VM + IL G+ Sbjct: 114 RELGFLAVHGFLHLLGYDHETEEEERVMFAKQEEILTRFGL 154 >gi|254877220|ref|ZP_05249930.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843241|gb|EET21655.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 169 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 14/172 (8%) Query: 1 MSVKKVNLPR--LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELS 58 M+ K L L+L + ++ I + L E FA + E++ Sbjct: 3 MTGMKRTLKMDSLNLNVINDDEH---PIPNQDLLEKCFALVADK-------HNISQAEVN 52 Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEAN 116 L + I+ +N ++R DKPTN++SF + + GDIV+A E+++ EA Sbjct: 53 LSIVSNQEIQQINKQFRHKDKPTNIISFEFEKPEGLPEDIADNFWGDIVIAPEVLKKEAK 112 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K ++H H+ IHG LHLLGYDH+DD +A ME LE +L +LGI +PY Sbjct: 113 EQNKNLDDHWQHIFIHGLLHLLGYDHIDDIEAEEMENLEIELLAELGIANPY 164 >gi|218699023|ref|YP_002406652.1| putative metalloprotease [Escherichia coli IAI39] gi|226710476|sp|B7NM10|RRMF_ECO7I RecName: Full=Probable rRNA maturation factor YbeY gi|218369009|emb|CAR16763.1| putative metal-dependent hydrolase [Escherichia coli IAI39] Length = 155 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 63/166 (37%), Positives = 89/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E+ E E F ++ +I + + E+++ DS Sbjct: 1 MSQVILDLQLACEDNSGLPE-------ESQFQTWLNAVIPQF----QEESEVTIRVVDSA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP G +LGD+V+ +++E EA GK E H Sbjct: 50 ESHCLNLTYRGKDKPTNVLSFPFEV--PPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153 >gi|124268424|ref|YP_001022428.1| hypothetical protein Mpe_A3240 [Methylibium petroleiphilum PM1] gi|171769843|sp|A2SKV4|RRMF_METPP RecName: Full=Probable rRNA maturation factor gi|124261199|gb|ABM96193.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 149 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 18/166 (10%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 +K+ P L L + +A ++ R A+ E+++ Sbjct: 1 MKRPARPVLKLSLQFADASHRAQLP-RHKVLRWIRAALDV-----------PAEITVRIV 48 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 + LN +YR D TNVL+F +++ D++L ++E EA G+ Sbjct: 49 GTDEGRALNRDYRQKDYATNVLTFDYE------AEPVVVADLILCAPVVEREARDEGRSL 102 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E H HL++HG LH G+DH + +A ME E +L LG DPY Sbjct: 103 EAHYAHLLVHGTLHAQGHDHEIEAEAQAMEARETEVLRALGYADPY 148 >gi|307252587|ref|ZP_07534481.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859909|gb|EFM91928.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 159 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 85/162 (52%), Gaps = 8/162 (4%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +DLQIA EN + + + A++ F E+++ D Sbjct: 1 MIDLQIACEN---SENLPSLEQLTLWVQTALAYEAQTEDF---PETEMTIRIVDEAESHE 54 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP +G +LGD+V+ +++E E E+H HL Sbjct: 55 LNLTYRGKDKPTNVLSFPFEV--PEGIELPLLGDLVICRQVVEKEVEEQQISLESHWAHL 112 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH++D++A MEGLE I++ LG DPY + Sbjct: 113 AIHGTLHLLGYDHIEDEEAEEMEGLETEIMQKLGFADPYLSE 154 >gi|26007037|sp|O05960|RRMF_RICPR RecName: Full=Probable rRNA maturation factor gi|292572382|gb|ADE30297.1| Putative metal-dependent hydrolase [Rickettsia prowazekii Rp22] Length = 167 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 12/169 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++++I W + + + V L+ F K ELS++ T++ I T Sbjct: 1 MINVEIIRNYNKWREHRKINKGLIKKITQNV--LVRFDNFSKIKQFELSILLTNTAEILT 58 Query: 70 LNFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 LN ++R I+K TNVLSFP + LGDI YE+I E+ Sbjct: 59 LNQQFRSIEKATNVLSFPNNELNWHNLYSKLEFLYYSDYMHLGDIAFCYEVIYNESCEQQ 118 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K FENH +H++IH LHL+G+DH +D DA +ME LE IL GI PY Sbjct: 119 KTFENHFIHMLIHSILHLIGFDHQNDTDANIMESLEIEILSYFGIPSPY 167 >gi|82775936|ref|YP_402283.1| putative metalloprotease [Shigella dysenteriae Sd197] gi|309786321|ref|ZP_07680947.1| uncharacterized family UPF0054 family protein [Shigella dysenteriae 1617] gi|123563234|sp|Q32IR3|RRMF_SHIDS RecName: Full=Probable rRNA maturation factor YbeY gi|81240084|gb|ABB60794.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|308925715|gb|EFP71196.1| uncharacterized family UPF0054 family protein [Shigella dysenteriae 1617] Length = 155 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E+ E E F ++ +I + + E++++ D+ Sbjct: 1 MSQVILDLQLACEDNSGLPE-------ESQFQTWLNAVIPQF----QEESEVTILVVDTA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +LN YRG DKPTNVLSFP G +LGD+V+ +++E EA GK E H Sbjct: 50 ESHSLNLTYRGKDKPTNVLSFPFEV--PPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153 >gi|182678043|ref|YP_001832189.1| hypothetical protein Bind_1057 [Beijerinckia indica subsp. indica ATCC 9039] gi|238691235|sp|B2IIK7|RRMF_BEII9 RecName: Full=Probable rRNA maturation factor gi|182633926|gb|ACB94700.1| protein of unknown function UPF0054 [Beijerinckia indica subsp. indica ATCC 9039] Length = 205 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 91/159 (57%), Gaps = 6/159 (3%) Query: 13 LQIAVENALWGD---EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + IAVE+ W + E + + A+ +++ E+SL+F D I Sbjct: 5 IDIAVESPRWTEAGNEGEDPLSLDALVEAAIGAAVARAGIALHAEAEVSLLFCDDAFIRG 64 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN ++RG+DKPTNVLSFP+ D +LGDI++A+E EA K H+ HL Sbjct: 65 LNHQWRGLDKPTNVLSFPSDEDLEDAR---LLGDIIIAFETSAGEAKAEAKSLAAHVSHL 121 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HGFLHL+GYDH + ++A ME +E+ IL DLGI DPY Sbjct: 122 VVHGFLHLIGYDHEEAEEAEEMERMEQVILADLGIADPY 160 >gi|67459578|ref|YP_247202.1| putative metalloprotease [Rickettsia felis URRWXCal2] gi|75536024|sp|Q4UK98|RRMF_RICFE RecName: Full=Probable rRNA maturation factor gi|67005111|gb|AAY62037.1| Conserved hypothetical protein [Rickettsia felis URRWXCal2] Length = 167 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 86/169 (50%), Gaps = 12/169 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++++I W + + + V L+ F K ELS++ T++ I T Sbjct: 1 MINVEIIKNYDKWREHKQINKSLIKKITQNV--LLRFDNFSKIKQFELSILLTNTAEILT 58 Query: 70 LNFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 LN ++R I+K TNVLSFP+ + LGDI YE+I E+ Sbjct: 59 LNKQFRNIEKATNVLSFPSNELNWQDLYSKLEFLGDSDYIHLGDIAFCYEVIYNESCEQQ 118 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K FENH +HL+IH LHL+G+DH +D +A +ME LE IL GI+ PY Sbjct: 119 KNFENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEILSYFGISSPY 167 >gi|33592182|ref|NP_879826.1| putative metalloprotease [Bordetella pertussis Tohama I] gi|33571827|emb|CAE41339.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|332381599|gb|AEE66446.1| putative metalloprotease [Bordetella pertussis CS] Length = 149 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 44/113 (38%), Positives = 57/113 (50%), Gaps = 4/113 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL L LN E+RG D TNVL+F + GDIV+ ++ EA Sbjct: 38 ELGLRLVGLAEGRRLNREFRGRDYATNVLTFEYGTGPDG----VARGDIVVCVPVLAREA 93 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K +H HL +HG LH LGYDH+ +A ME LE ++L +GI DPY Sbjct: 94 REQRKTLLDHAAHLTVHGTLHALGYDHIKAGEARRMEALETAVLARMGIADPY 146 >gi|33600341|ref|NP_887901.1| putative metalloprotease [Bordetella bronchiseptica RB50] gi|46577415|sp|Q7WMN5|RRMF_BORBR RecName: Full=Probable rRNA maturation factor gi|145559541|sp|Q7VZ88|RRMF_BORPE RecName: Full=Probable rRNA maturation factor gi|33567940|emb|CAE31853.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 157 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 44/113 (38%), Positives = 57/113 (50%), Gaps = 4/113 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL L LN E+RG D TNVL+F + GDIV+ ++ EA Sbjct: 46 ELGLRLVGLAEGRRLNREFRGRDYATNVLTFEYGTGPDG----VARGDIVVCVPVLAREA 101 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K +H HL +HG LH LGYDH+ +A ME LE ++L +GI DPY Sbjct: 102 REQRKTLLDHAAHLTVHGTLHALGYDHIKAGEARRMEALETAVLARMGIADPY 154 >gi|325478360|gb|EGC81475.1| translation metalloprotein YbeY [Anaerococcus prevotii ACS-065-V-Col13] Length = 448 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 74/140 (52%), Gaps = 2/140 (1%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 ++ ++ K V+ ++ E+ E+S+ F D I LN E+RG+D+PT+ Sbjct: 6 ENKTDEEIKFDIDLEKTVAEVLKTEGL--EDNYEVSITFVDRKEIHKLNKEFRGVDRPTD 63 Query: 83 VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 VLSFP +MLGDIV+ ++ + +A G +++L H LHLLGYDH Sbjct: 64 VLSFPLDDEILIPNEDIMLGDIVICLDVAKDQAIEFGHSLRREVMYLTCHSTLHLLGYDH 123 Query: 143 VDDKDACVMEGLERSILEDL 162 +++ + M E+ ++++L Sbjct: 124 MEEDEKREMRTREKEVMKNL 143 >gi|222109709|ref|YP_002551973.1| hypothetical protein Dtpsy_0491 [Acidovorax ebreus TPSY] gi|254803969|sp|B9MCH3|RRMF_ACIET RecName: Full=Probable rRNA maturation factor gi|221729153|gb|ACM31973.1| protein of unknown function UPF0054 [Acidovorax ebreus TPSY] Length = 152 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 17/164 (10%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 +N L LQ A + L A+ + + ++ E+++ + Sbjct: 3 LNQLSLSLQFARDAEATAHRATLP---RHAVARWIRHALAV-------DAEITVRIVGAE 52 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 + LN E+R D TNVL+F + + D+VL ++E EA K E H Sbjct: 53 EGQRLNREFRHKDYATNVLTFDYQQE------PVAVADLVLCAPVVEREAREQNKTLEEH 106 Query: 126 LVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPY 168 HL++HG LH G+DH ++DA ME E +IL++LG DPY Sbjct: 107 YAHLLVHGTLHAQGWDHETSEQDAQEMEVYETAILQELGFADPY 150 >gi|58040435|ref|YP_192399.1| hypothetical protein GOX2007 [Gluconobacter oxydans 621H] gi|62901405|sp|Q5FPF3|RRMF_GLUOX RecName: Full=Probable rRNA maturation factor gi|58002849|gb|AAW61743.1| Hypothetical protein GOX2007 [Gluconobacter oxydans 621H] Length = 168 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 10/156 (6%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 I +E+A W + E +A+ + +G S++ ++ LN Sbjct: 11 DIIIEDARWRASVPG---TERAIRRALVAVARQGGPDFTQSPAPSILLATDRIVKRLNAR 67 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 +R +KPTNVL+F + S + GDIVL YE + EA + HL HL++HG Sbjct: 68 FRDKNKPTNVLTF-------EPLSPMHGGDIVLGYETVRREAAAARRSLRAHLSHLVVHG 120 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 LHL GYDH +A MEG+E L LG DP+ Sbjct: 121 ALHLAGYDHHHPGEAREMEGIETRTLRSLGFGDPWR 156 >gi|89899547|ref|YP_522018.1| hypothetical protein Rfer_0737 [Rhodoferax ferrireducens T118] gi|122479948|sp|Q220R6|RRMF_RHOFD RecName: Full=Probable rRNA maturation factor gi|89344284|gb|ABD68487.1| protein of unknown function UPF0054 [Rhodoferax ferrireducens T118] Length = 148 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 10/145 (6%) Query: 25 EIHLRTLCEVVFAK-AVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 ++ L + V+ + ++ E+++ D+ + LN +YR D TNV Sbjct: 13 KLENPALHRGALPRHKVARWLRHAL---QSDAEITVRIVDTEEGQALNRDYRHKDYATNV 69 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 L+F ++ D+VL ++ EA GK + H HL++HG LH G+DH Sbjct: 70 LTFDYTQE------PVVTADLVLCAPVVAQEAKEQGKTLQEHYAHLLVHGALHAQGWDHE 123 Query: 144 DDKDACVMEGLERSILEDLGINDPY 168 ++DA VME E I+ LG +PY Sbjct: 124 AEEDAQVMELRESEIMARLGFENPY 148 >gi|157146731|ref|YP_001454050.1| putative metalloprotease [Citrobacter koseri ATCC BAA-895] gi|166228386|sp|A8AJF1|RRMF_CITK8 RecName: Full=Probable rRNA maturation factor gi|157083936|gb|ABV13614.1| hypothetical protein CKO_02504 [Citrobacter koseri ATCC BAA-895] Length = 155 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E+ + + + + + E+++ D Sbjct: 1 MSQVILDLQLACED---HSGLPEESQFQTWLNAVIPQF--------QEESEVTIRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA K E H Sbjct: 50 ESHDLNLTYRGKDKPTNVLSFPFE--APPGMEMPLLGDLIICRQVVEQEAKEQDKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYISE 153 >gi|3639064|gb|AAC36473.1| hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 140 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 6/139 (4%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E F + +I + + E+++ D L YRG DKPTNVLSFP + Sbjct: 6 EAQFQTWLDGVIPQF----QEEAEVTIRLVDEAETPDLILTYRGKDKPTNVLSFPFE--A 59 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 G +LGD++++ +++E EA E H H+++HG LHLLGYDH+DD +A ME Sbjct: 60 PAGIEMPLLGDLIISRQVVEQEAQEQTNPLEAHWAHMVVHGSLHLLGYDHIDDDEAEEME 119 Query: 153 GLERSILEDLGINDPYEVD 171 LE I+ +G DPY + Sbjct: 120 SLETEIMLAMGYEDPYIAE 138 >gi|26991468|ref|NP_746893.1| putative metalloprotease [Pseudomonas putida KT2440] gi|37999614|sp|Q88DN6|RRMF_PSEPK RecName: Full=Probable rRNA maturation factor gi|24986545|gb|AAN70357.1|AE016677_8 conserved hypothetical protein TIGR00043 [Pseudomonas putida KT2440] Length = 157 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 84/164 (51%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LD+Q A + A D LR CE+ + + E+++ D Sbjct: 1 MLELDIQRATDAATPEDAA-LRRWCELALRQ------------RSADSEMTIRLVDEAEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN YR D TNVLSFP D +LGD+V+ ++E EA GK E H Sbjct: 48 RELNHTYRHKDYATNVLSFPAD-VPDDLLDIPLLGDLVICVAVVEREAAEQGKSLEAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL+IHG LHLLGYDH++D++A ME LER +L +LG DPY D Sbjct: 107 HLVIHGCLHLLGYDHIEDEEAEEMESLERELLAELGHPDPYADD 150 >gi|26246634|ref|NP_752674.1| putative metalloprotease [Escherichia coli CFT073] gi|110640881|ref|YP_668609.1| putative metalloprotease [Escherichia coli 536] gi|170681098|ref|YP_001742777.1| putative metalloprotease [Escherichia coli SMS-3-5] gi|191173958|ref|ZP_03035476.1| conserved hypothetical protein [Escherichia coli F11] gi|215485692|ref|YP_002328123.1| putative metalloprotease [Escherichia coli O127:H6 str. E2348/69] gi|227884367|ref|ZP_04002172.1| metal-dependent hydrolase [Escherichia coli 83972] gi|293408784|ref|ZP_06652623.1| metalloprotease [Escherichia coli B354] gi|300989981|ref|ZP_07179057.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 45-1] gi|300996643|ref|ZP_07181501.1| hypothetical protein HMPREF9553_04968 [Escherichia coli MS 200-1] gi|301025207|ref|ZP_07188778.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 69-1] gi|301049851|ref|ZP_07196789.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 185-1] gi|306812917|ref|ZP_07447110.1| putative metalloprotease [Escherichia coli NC101] gi|312965100|ref|ZP_07779337.1| uncharacterized family UPF0054 family protein [Escherichia coli 2362-75] gi|331645816|ref|ZP_08346919.1| putative metalloprotease YbeY [Escherichia coli M605] gi|331656681|ref|ZP_08357643.1| putative metalloprotease YbeY [Escherichia coli TA206] gi|331682077|ref|ZP_08382701.1| putative metalloprotease YbeY [Escherichia coli H299] gi|29428208|sp|Q8FJY3|RRMF_ECOL6 RecName: Full=Probable rRNA maturation factor YbeY gi|123049385|sp|Q0TK21|RRMF_ECOL5 RecName: Full=Probable rRNA maturation factor YbeY gi|226710479|sp|B1LLB0|RRMF_ECOSM RecName: Full=Probable rRNA maturation factor YbeY gi|254807364|sp|B7UKU2|RRMF_ECO27 RecName: Full=Probable rRNA maturation factor YbeY gi|26107033|gb|AAN79217.1|AE016757_121 Hypothetical protein ybeY [Escherichia coli CFT073] gi|110342473|gb|ABG68710.1| hypothetical protein YbeY [Escherichia coli 536] gi|170518816|gb|ACB16994.1| conserved hypothetical protein [Escherichia coli SMS-3-5] gi|190905734|gb|EDV65355.1| conserved hypothetical protein [Escherichia coli F11] gi|215263764|emb|CAS08100.1| predicted protein [Escherichia coli O127:H6 str. E2348/69] gi|222032412|emb|CAP75151.1| metalloprotease ybeY [Escherichia coli LF82] gi|227838453|gb|EEJ48919.1| metal-dependent hydrolase [Escherichia coli 83972] gi|281177807|dbj|BAI54137.1| conserved hypothetical protein [Escherichia coli SE15] gi|291471962|gb|EFF14445.1| metalloprotease [Escherichia coli B354] gi|300298385|gb|EFJ54770.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 185-1] gi|300304472|gb|EFJ58992.1| hypothetical protein HMPREF9553_04968 [Escherichia coli MS 200-1] gi|300396159|gb|EFJ79697.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 69-1] gi|300407256|gb|EFJ90794.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 45-1] gi|305853680|gb|EFM54119.1| putative metalloprotease [Escherichia coli NC101] gi|307552523|gb|ADN45298.1| putative metal-dependent hydrolase YbeY [Escherichia coli ABU 83972] gi|312290191|gb|EFR18074.1| uncharacterized family UPF0054 family protein [Escherichia coli 2362-75] gi|312945199|gb|ADR26026.1| putative metalloprotease [Escherichia coli O83:H1 str. NRG 857C] gi|315292082|gb|EFU51434.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 153-1] gi|315299191|gb|EFU58445.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 16-3] gi|320194165|gb|EFW68797.1| putative metalloprotease [Escherichia coli WV_060327] gi|323191292|gb|EFZ76556.1| hypothetical protein ECRN5871_0581 [Escherichia coli RN587/1] gi|324010386|gb|EGB79605.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 60-1] gi|330910416|gb|EGH38926.1| metal-dependent hydrolase [Escherichia coli AA86] gi|331044568|gb|EGI16695.1| putative metalloprotease YbeY [Escherichia coli M605] gi|331054929|gb|EGI26938.1| putative metalloprotease YbeY [Escherichia coli TA206] gi|331080756|gb|EGI51930.1| putative metalloprotease YbeY [Escherichia coli H299] Length = 155 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E+ E E F ++ +I + + E+++ D+ Sbjct: 1 MSQVILDLQLACEDNSGLPE-------ESQFQTWLNAVIPQF----QEESEVTIRVVDTA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +LN YRG DKPTNVLSFP G +LGD+V+ +++E EA GK E H Sbjct: 50 ESHSLNLTYRGKDKPTNVLSFPFEV--PPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME +E I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMEAIETEIMLALGYEDPYIAE 153 >gi|119775709|ref|YP_928449.1| putative metalloprotease [Shewanella amazonensis SB2B] gi|145572772|sp|A1S8S3|RRMF_SHEAM RecName: Full=Probable rRNA maturation factor gi|119768209|gb|ABM00780.1| protein of unknown function UPF0054 [Shewanella amazonensis SB2B] Length = 153 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 83/159 (52%), Gaps = 14/159 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ AV E T V + + EL++ D+ + L Sbjct: 7 LDLQFAVNPGNLPTEAEFETWVRVALGDTL------------DEAELTIRIVDATESQQL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YRG DKPTNVLSFP + G +LGD+V+ ++E EA K E H H++ Sbjct: 55 NRDYRGKDKPTNVLSFPFE--APPGMELPLLGDLVICASVVENEALEQHKALEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH+DD +A ME LE ++L LG DPY+ Sbjct: 113 VHGCLHLLGYDHIDDAEAEEMEALETTLLTGLGYPDPYK 151 >gi|50086161|ref|YP_047671.1| hypothetical protein ACIAD3160 [Acinetobacter sp. ADP1] gi|59799110|sp|Q6F7W6|RRMF_ACIAD RecName: Full=Probable rRNA maturation factor gi|49532137|emb|CAG69849.1| conserved hypothetical protein [Acinetobacter sp. ADP1] Length = 159 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 8/162 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L ++++ A + L KA+ + + E+ + D + L Sbjct: 1 MKLNLSLQQAF---KSPDLALKRAHIKKAIETTLDHVEV--KTDSEIGIACVDHEQSHRL 55 Query: 71 NFEYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N EYRG DK TNVLSFP+ + LGD+V+ ++ EA K + H +H Sbjct: 56 NLEYRGKDKSTNVLSFPSDIPEEVLPLLDARPLGDLVICIPVVLDEAIEQHKTAQAHFMH 115 Query: 129 LIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 +++HG LHLLGYDH D+DA ME LE IL LG+ +PY+ Sbjct: 116 MLVHGTLHLLGYDHETSDEDAEEMEALEIEILAKLGLENPYQ 157 >gi|157964881|ref|YP_001499705.1| putative metalloprotease [Rickettsia massiliae MTU5] gi|157844657|gb|ABV85158.1| Putative metal-dependent hydrolase [Rickettsia massiliae MTU5] Length = 177 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 84/169 (49%), Gaps = 12/169 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++++I W + + + + L+ F K ELS++ T+ I T Sbjct: 11 MINVEIVRNYNKWREHKQINKSLIKKITQNI--LLRFDNFSKIKQCELSILLTNVAEILT 68 Query: 70 LNFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 LN ++R I+K TNVLSFP+ + LGDI YE+I E+ Sbjct: 69 LNKQFRNIEKATNVLSFPSNELNWQDLYSKLEFLGDSDYMHLGDIAFCYEVIYNESCEQQ 128 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K FENH +HL+IH LHL+G+DH +D +A +ME LE IL GI PY Sbjct: 129 KTFENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEILSYFGIFSPY 177 >gi|148251672|ref|YP_001236257.1| hypothetical protein BBta_0048 [Bradyrhizobium sp. BTAi1] gi|172047308|sp|A5E857|RRMF_BRASB RecName: Full=Probable rRNA maturation factor gi|146403845|gb|ABQ32351.1| hypothetical protein BBta_0048 [Bradyrhizobium sp. BTAi1] Length = 169 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 87/160 (54%), Gaps = 8/160 (5%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 ++ + W D+ + A + ++ E++++ TD I TLN Sbjct: 10 EVIIAADCWQDQPDAEDVIHRAILAAAERVDAEVG-----DAEIAVMLTDDAGIRTLNSN 64 Query: 74 YRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 +RGIDKPTNVLSFP + D + MLGDI +AYE + EA+ K F++HL HL Sbjct: 65 WRGIDKPTNVLSFPALQPTGPRGDDDAPRMLGDIAIAYETMRREADEEQKPFDHHLSHLT 124 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +HGFLHL+GYDH D +A ME LE IL LG+ DPY Sbjct: 125 VHGFLHLIGYDHESDAEAEEMEALETEILAHLGVPDPYAD 164 >gi|72161249|ref|YP_288906.1| metalloprotease [Thermobifida fusca YX] gi|123760864|sp|Q47RN4|RRMF_THEFY RecName: Full=Probable rRNA maturation factor gi|71914981|gb|AAZ54883.1| Protein of unknown function UPF0054 [Thermobifida fusca YX] Length = 155 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 14/154 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + +A E+ + DE L L + + ELS++ D + L Sbjct: 1 MSIDVANESGVPADEERLARLARYILDA----------LRVHPLAELSVLLVDEEPMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGC----SSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + + PT+VLSFP +LGD+V+ ++ +A G ++ + Sbjct: 51 HVRWMNEPGPTDVLSFPMDELRPGAPGRTSEPGILGDVVICPQVAARQAERAGHSMQDEI 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 L HG LHLLGYDH + + M L+ +L Sbjct: 111 DLLCTHGILHLLGYDHAEPDEHREMFSLQNELLA 144 >gi|227500708|ref|ZP_03930757.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098] gi|227217166|gb|EEI82515.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098] Length = 443 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 2/127 (1%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 K + ++ E+ E+S+ F D I+ LN E+R ID+ T+VLSFP + Sbjct: 19 LEKTIREVLKTEGL--EDNYEVSITFVDREEIQRLNKEFRNIDRQTDVLSFPLDDDMNLP 76 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 +MLGDIV+ ++ + +A G +++L H LHLLGYDH+++ D M E Sbjct: 77 GEDIMLGDIVICMDVAKDQAREFGHSLRREIMYLTCHSTLHLLGYDHMEEDDKRKMRARE 136 Query: 156 RSILEDL 162 + I+ +L Sbjct: 137 KEIMRNL 143 >gi|145590039|ref|YP_001156636.1| hypothetical protein Pnuc_1860 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|189039044|sp|A4T008|RRMF_POLSQ RecName: Full=Probable rRNA maturation factor gi|145048445|gb|ABP35072.1| protein of unknown function UPF0054 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 155 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 72/157 (45%), Gaps = 11/157 (7%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 L I ++ A E L+ + K + + L+L F +S + LN Sbjct: 6 KLLIDIQTASPAIEAALKKIASSALIKKWIKAATPLSGL------LTLRFVNSTEGKKLN 59 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +R TNVL+FP + S DI+ +I EA GK + HL HLI+ Sbjct: 60 AAFRKKHYATNVLTFPYEHSKSALS-----ADIIFCLPVIRKEAKEQGKTVKAHLAHLIV 114 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HG LH G+DH +K+ ME LE ++L+ LG DPY Sbjct: 115 HGCLHAQGFDHEHEKETKKMEKLEVALLKKLGFTDPY 151 >gi|295100850|emb|CBK98395.1| conserved hypothetical protein TIGR00043 [Faecalibacterium prausnitzii L2-6] Length = 163 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 7/148 (4%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 I + + ++ +A + ++ +F ++ E+S+ F D+ I LN +YR PT+ Sbjct: 11 QKAIKVPSGLRILIRRACNAVLEYEHF--DDPAEISVTFVDNAAIAELNNQYRNKPMPTD 68 Query: 83 VLSFPTAFAS----SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 VLSFP + MLGDIV++ E + +A + G + + L +H LHLL Sbjct: 69 VLSFPLGENGVYDVDENNGCKMLGDIVISMERAQEQATLYGHPLQREVAFLTVHSMLHLL 128 Query: 139 GYDHVDDK-DACVMEGLERSILEDLGIN 165 GYDH + +A M E ++L LG+ Sbjct: 129 GYDHENGGLEAMRMREKEEAVLTQLGLP 156 >gi|51473908|ref|YP_067665.1| putative metalloprotease [Rickettsia typhi str. Wilmington] gi|59799025|sp|Q68W09|RRMF_RICTY RecName: Full=Probable rRNA maturation factor gi|51460220|gb|AAU04183.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 167 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 85/169 (50%), Gaps = 12/169 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++++I W + + + V L+ +F K ELS++ T++ I T Sbjct: 1 MINVEIVRNYNKWREHRKINKGLIKKITQNV--LVRFDHFDKIKQFELSILLTNTAEILT 58 Query: 70 LNFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 LN ++R I+K TNVLSFP + LGDI YE+I E+ Sbjct: 59 LNQQFRSIEKATNVLSFPNNELNWHNLYSKLEFLYYSDYMHLGDIAFCYEVIYNESCEQQ 118 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K FENH +H++IH LHL+G+DH +D DA +ME LE IL GI PY Sbjct: 119 KTFENHFIHMLIHSILHLIGFDHQNDTDANIMESLEIEILSYFGIPSPY 167 >gi|294012045|ref|YP_003545505.1| putative metal-dependent hydrolase [Sphingobium japonicum UT26S] gi|292675375|dbj|BAI96893.1| putative metal-dependent hydrolase [Sphingobium japonicum UT26S] Length = 166 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 8/167 (4%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +++ + E W D L + A+++ + E + E+++ T + Sbjct: 1 MIEVAVLHEQG-WPD-TDWELLAQRAVVAAITHSPYAAFAADEALYEVAVKLTTDEEVHQ 58 Query: 70 LNFEYRGIDKPTNVLSFPT------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 LN YR DKPTNVLSFP ++ ++LGDIVLA + EA G Sbjct: 59 LNRAYRDKDKPTNVLSFPMVQSDLLETTANTDDGEVLLGDIVLAEGVCAREAAEKGVSVA 118 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +H HLI+HG HLLGYDH++D +A ME LE L LGI+DPY Sbjct: 119 DHATHLIVHGTFHLLGYDHMEDAEAEAMEALETQSLISLGISDPYGD 165 >gi|258542172|ref|YP_003187605.1| hypothetical protein APA01_10760 [Acetobacter pasteurianus IFO 3283-01] gi|256633250|dbj|BAH99225.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01] gi|256636309|dbj|BAI02278.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03] gi|256639362|dbj|BAI05324.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07] gi|256642418|dbj|BAI08373.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22] gi|256645473|dbj|BAI11421.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26] gi|256648526|dbj|BAI14467.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32] gi|256651579|dbj|BAI17513.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654570|dbj|BAI20497.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12] Length = 168 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 16/156 (10%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 +I + + W +H E + +A++ G ++V + LN Sbjct: 26 EILIRDRRWRSYVHNP---EQLVWRALAACSEYGGLPD------TVVLATDREVRELNGR 76 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 +RG +PTNVL+F + + GDI+LA E + EA GK +HL HL+IHG Sbjct: 77 HRGKHRPTNVLTF-------EPPPGITGGDIILALETVVREARKAGKPVADHLAHLVIHG 129 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 LHL GYDH +A ME LE +L L + +P++ Sbjct: 130 SLHLAGYDHHHPGEAREMEMLESRLLSRLRVPNPWK 165 >gi|33595813|ref|NP_883456.1| putative metalloprotease [Bordetella parapertussis 12822] gi|46577410|sp|Q7WB68|RRMF_BORPA RecName: Full=Probable rRNA maturation factor gi|33565892|emb|CAE36440.1| conserved hypothetical protein [Bordetella parapertussis] Length = 157 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 44/113 (38%), Positives = 56/113 (49%), Gaps = 4/113 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL L LN E+RG D TNVL+F + GDIV+ ++ EA Sbjct: 46 ELGLRLVGLAEGRRLNREFRGRDYATNVLTFEYGTGPDG----VARGDIVVCVPVLAREA 101 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K +H HL +HG LH LGYDH+ +A ME LE +L +GI DPY Sbjct: 102 REQRKTLLDHAAHLTVHGTLHALGYDHIKAGEARRMEALETVVLARMGIADPY 154 >gi|319947870|ref|ZP_08022057.1| metal-binding heat shock protein [Dietzia cinnamea P4] gi|319438476|gb|EFV93409.1| metal-binding heat shock protein [Dietzia cinnamea P4] Length = 160 Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E+ + DE L + V A+ + ELS+ D + L Sbjct: 1 MSIEVANESGVEVDEAELIDVAAFVIARMDVH----------PAAELSITLVDKDTMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP + MLGDIVL +A G + Sbjct: 51 HVTWMNLPGPTDVMSFPMDELTPGGRPDLPEPGPAMLGDIVLCPAFAADQAASSGHPLAH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L L +HG LHLLGYDH + + M GL+ +L + Sbjct: 111 ELALLTVHGCLHLLGYDHAEPAEEREMFGLQNELLGE 147 >gi|54023400|ref|YP_117642.1| putative metalloprotease [Nocardia farcinica IFM 10152] gi|59799084|sp|Q5YZW3|RRMF_NOCFA RecName: Full=Probable rRNA maturation factor gi|54014908|dbj|BAD56278.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 184 Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ + E L ++ V + + ELS+V D + L Sbjct: 1 MSIEIANESGIDVPEEDLVSVARFVIGRMDVH----------PAAELSMVLVDLDTMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP MLGDIVL E +A+ G E+ Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDSPEPGPSMLGDIVLCPEFAADQAHKAGHSLEH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L L +HG LHLLGYDH + ++ M L+ +LE+ Sbjct: 111 ELALLTVHGVLHLLGYDHAEPEEEKEMFALQARLLEE 147 >gi|329113344|ref|ZP_08242125.1| Putative metalloprotease [Acetobacter pomorum DM001] gi|326697169|gb|EGE48829.1| Putative metalloprotease [Acetobacter pomorum DM001] Length = 179 Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 16/156 (10%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 +I + + W +H E + +A++ G ++V + LN Sbjct: 37 EILIRDRRWRSYVHNP---EQLVWRALAACSEYGGLPD------TVVLATDREVRELNGR 87 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 +RG +PTNVL+F + + GDI+LA E + EA GK +HL HL+IHG Sbjct: 88 HRGKQRPTNVLTF-------EPPPGINGGDIILALETVVREARKAGKPVADHLAHLVIHG 140 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 LHL GYDH +A ME LE +L L + +P++ Sbjct: 141 SLHLAGYDHHHPGEAREMEMLESRLLSRLRVPNPWK 176 >gi|317404693|gb|EFV85085.1| hypothetical protein HMPREF0005_04068 [Achromobacter xylosoxidans C54] Length = 157 Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 44/114 (38%), Positives = 58/114 (50%), Gaps = 4/114 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 ELSL + LN ++R D TNVL+F + GDIV+ ++ E Sbjct: 45 AELSLRLVGAAEGRRLNRDFRQRDYATNVLTFEYGVDPLG----VARGDIVMCVPVLVRE 100 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A K +H HL +HG LH LGYDH+ +DA ME LE + L +GI DPY Sbjct: 101 AREQRKALLDHAAHLTLHGVLHSLGYDHIKARDARRMEALETATLARMGIADPY 154 >gi|91775004|ref|YP_544760.1| hypothetical protein Mfla_0649 [Methylobacillus flagellatus KT] gi|122400164|sp|Q1H3L8|RRMF_METFK RecName: Full=Probable rRNA maturation factor gi|91708991|gb|ABE48919.1| protein of unknown function UPF0054 [Methylobacillus flagellatus KT] Length = 149 Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 69/166 (41%), Gaps = 21/166 (12%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + +++Q A E +E R E +L D Sbjct: 1 MPRLAMNVQYASEWDSLPNEKQFRKWARAALRV---------------DTEATLRIVDEE 45 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN +YRG D TNVL+FP ++GDI+L ++ EA E+H Sbjct: 46 EGRMLNRDYRGKDYATNVLTFPLEEE------PWLVGDIILCAPVVAREAAEQNITLESH 99 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL +HG LH+ GYDH D+ A +ME +E + LG DPY + Sbjct: 100 YAHLTVHGILHMHGYDHEDEHQAELMESIESFTMIQLGYPDPYSSE 145 >gi|148549866|ref|YP_001269968.1| putative metalloprotease [Pseudomonas putida F1] gi|167012965|sp|A5W9H4|RRMF_PSEP1 RecName: Full=Probable rRNA maturation factor gi|148513924|gb|ABQ80784.1| protein of unknown function UPF0054 [Pseudomonas putida F1] gi|313500768|gb|ADR62134.1| Putative metalloprotease [Pseudomonas putida BIRD-1] Length = 157 Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 84/164 (51%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LD+Q A + A D LR CE+ + + E+++ D Sbjct: 1 MLELDIQRATDAATPEDAA-LRRWCELALRQ------------RSADSEMTIRLVDEAEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN YR D TNVLSFP + +LGD+V+ ++E EA GK E H Sbjct: 48 RELNHTYRHKDYATNVLSFPAD-VPDELLDIPLLGDLVICVAVVEREAAEQGKSLEAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL+IHG LHLLGYDH++D++A ME LER +L +LG DPY D Sbjct: 107 HLVIHGCLHLLGYDHIEDEEAEEMESLERELLAELGHPDPYADD 150 >gi|296166307|ref|ZP_06848744.1| probable metalloprotease [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898316|gb|EFG77885.1| probable metalloprotease [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 177 Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V A+ ELS+V D+ + L Sbjct: 1 MSIEVSNESGVDVSETELISVARFVIARM----------DVNPAAELSMVLLDTAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP MLGDIVL E +A+ G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPSMLGDIVLCPEFAAGQADAAGHSLGH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L L IHG LHLLGYDH + + M L+ +LE+ Sbjct: 111 ELALLTIHGVLHLLGYDHGEPDEEKEMFALQDRLLEE 147 >gi|268611989|ref|ZP_06145716.1| hypothetical protein RflaF_21081 [Ruminococcus flavefaciens FD-1] Length = 170 Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 10/162 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L++ V+N E+ + ++ + +++ F E+S+ F ++ I+ Sbjct: 1 MAKLKVYVKNN--QTEVKVPVGIRLLIRRCCQAVLTTENFG--KDAEVSVSFVSNNEIKN 56 Query: 70 LNFEYRGIDKPTNVLSFPTAFAS-----SDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YR D T+VLSFP + ++ LGD+V++ E +A G E Sbjct: 57 LNKIYRNKDSVTDVLSFPLTGDDGTVEINPETGAVQLGDVVISLETAVKQAQNYGHSLER 116 Query: 125 HLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGIN 165 + L +H LHLLGYDH + D +M E S+LE LGI+ Sbjct: 117 EVGFLTVHSMLHLLGYDHETSQLDQRIMREKEESVLEKLGIS 158 >gi|167626246|ref|YP_001676746.1| hypothetical protein Fphi_0025 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189030202|sp|B0TXS6|RRMF_FRAP2 RecName: Full=Probable rRNA maturation factor gi|167596247|gb|ABZ86245.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 158 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 12/160 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L+L + ++ I + L E FA + E+++ + I+ + Sbjct: 4 LNLNVINDDEH---PIPNQDLLEKCFALVADK-------HNISQAEVNVSIVSNQEIQQI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N ++R DKPTN++SF + ++ GDIV+A E+++ EA K ++H H Sbjct: 54 NKQFRHKDKPTNIISFEFEKPEGLPEDIAANFWGDIVIAPEVLKKEAKEQNKNLDDHWQH 113 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 + IHG LHLLGYDH+DD +A ME LE +L +LGI +PY Sbjct: 114 IFIHGLLHLLGYDHIDDIEAEEMENLEIELLAELGIANPY 153 >gi|239947061|ref|ZP_04698814.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239921337|gb|EER21361.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 167 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 87/169 (51%), Gaps = 12/169 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++++I W + + + V L+ F K +ELS++ T++ I T Sbjct: 1 MINVEIVRNYNKWCEHEQINKSLIKKITQNV--LLRFDNFSKIKQLELSILLTNTVEILT 58 Query: 70 LNFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 LN ++R I+K TNVLSFP+ + LGDI YE+I E+ Sbjct: 59 LNKQFRNIEKATNVLSFPSNELNWQDLYSKLEFLGDSDYMHLGDIAFCYEVIYNESCEQQ 118 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K FENH +HL+IH LHL+G+DH +D +A +ME LE IL GI+ PY Sbjct: 119 KTFENHFIHLLIHSVLHLIGFDHQNDTEANIMENLEIEILSYFGISSPY 167 >gi|218703992|ref|YP_002411511.1| putative metalloprotease [Escherichia coli UMN026] gi|293403920|ref|ZP_06647914.1| metalloprotease [Escherichia coli FVEC1412] gi|298379695|ref|ZP_06989300.1| metalloprotease ybeY [Escherichia coli FVEC1302] gi|300901172|ref|ZP_07119276.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 198-1] gi|331662026|ref|ZP_08362949.1| putative metalloprotease YbeY [Escherichia coli TA143] gi|226710478|sp|B7N9R4|RRMF_ECOLU RecName: Full=Probable rRNA maturation factor YbeY gi|218431089|emb|CAR11965.1| putative metal-dependent hydrolase [Escherichia coli UMN026] gi|291428506|gb|EFF01531.1| metalloprotease [Escherichia coli FVEC1412] gi|298279393|gb|EFI20901.1| metalloprotease ybeY [Escherichia coli FVEC1302] gi|300355386|gb|EFJ71256.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 198-1] gi|331060448|gb|EGI32412.1| putative metalloprotease YbeY [Escherichia coli TA143] Length = 155 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E+ E E F ++ +I + + E+++ D+ Sbjct: 1 MSQVILDLQLACEDNSGLPE-------ESQFQTWLNAVIPQF----QEESEVTIRVVDTA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +LN YRG DKPTNVLSFP G +LGD+V+ +++E EA GK E H Sbjct: 50 ESHSLNLIYRGKDKPTNVLSFPFEV--PPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153 >gi|319795922|ref|YP_004157562.1| hypothetical protein Varpa_5295 [Variovorax paradoxus EPS] gi|315598385|gb|ADU39451.1| protein of unknown function UPF0054 [Variovorax paradoxus EPS] Length = 152 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 7/116 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 E+++ D+ + LN E+RG D TNVL+F A + + + D+VL ++ Sbjct: 41 DGEITVRIVDADEGQRLNREFRGKDYATNVLTFDYAQS------PVAMADLVLCAPVVAR 94 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPY 168 EA K H HL++HG LH G+DH + DA ME E IL +LGI DPY Sbjct: 95 EAKEQRKTLAAHYAHLLVHGTLHAQGWDHETSEADADEMEAYEIQILAELGIRDPY 150 >gi|15800372|ref|NP_286384.1| putative metalloprotease [Escherichia coli O157:H7 EDL933] gi|15829951|ref|NP_308724.1| metalloprotease [Escherichia coli O157:H7 str. Sakai] gi|168752228|ref|ZP_02777250.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] gi|168758301|ref|ZP_02783308.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|168764665|ref|ZP_02789672.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] gi|168767105|ref|ZP_02792112.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|168777601|ref|ZP_02802608.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196] gi|168779149|ref|ZP_02804156.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] gi|168786508|ref|ZP_02811515.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] gi|168802432|ref|ZP_02827439.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] gi|195939396|ref|ZP_03084778.1| putative metalloprotease [Escherichia coli O157:H7 str. EC4024] gi|208808538|ref|ZP_03250875.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] gi|208816422|ref|ZP_03257601.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208822844|ref|ZP_03263162.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209397406|ref|YP_002269294.1| hypothetical protein ECH74115_0752 [Escherichia coli O157:H7 str. EC4115] gi|217326196|ref|ZP_03442280.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|254791822|ref|YP_003076659.1| putative metalloprotease [Escherichia coli O157:H7 str. TW14359] gi|261224127|ref|ZP_05938408.1| hypothetical protein EscherichiacoliO157_05909 [Escherichia coli O157:H7 str. FRIK2000] gi|261257821|ref|ZP_05950354.1| hypothetical protein EscherichiacoliO157EcO_18684 [Escherichia coli O157:H7 str. FRIK966] gi|26006914|sp|Q8XBK1|RRMF_ECO57 RecName: Full=Probable rRNA maturation factor YbeY gi|226704000|sp|B5YQL0|RRMF_ECO5E RecName: Full=Probable rRNA maturation factor YbeY gi|12513568|gb|AAG54992.1|AE005245_1 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13360155|dbj|BAB34120.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187767195|gb|EDU31039.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196] gi|188013886|gb|EDU52008.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] gi|189002868|gb|EDU71854.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] gi|189354845|gb|EDU73264.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|189363348|gb|EDU81767.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|189365375|gb|EDU83791.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] gi|189373611|gb|EDU92027.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] gi|189375556|gb|EDU93972.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] gi|208728339|gb|EDZ77940.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] gi|208733070|gb|EDZ81758.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208737037|gb|EDZ84721.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209158806|gb|ACI36239.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4115] gi|209776880|gb|ACI86752.1| hypothetical protein ECs0697 [Escherichia coli] gi|209776882|gb|ACI86753.1| hypothetical protein ECs0697 [Escherichia coli] gi|209776886|gb|ACI86755.1| hypothetical protein ECs0697 [Escherichia coli] gi|217322417|gb|EEC30841.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|254591222|gb|ACT70583.1| conserved protein [Escherichia coli O157:H7 str. TW14359] gi|320193065|gb|EFW67705.1| putative metalloprotease [Escherichia coli O157:H7 str. EC1212] gi|326341409|gb|EGD65201.1| putative metalloprotease [Escherichia coli O157:H7 str. 1044] gi|326345811|gb|EGD69550.1| putative metalloprotease [Escherichia coli O157:H7 str. 1125] Length = 155 Score = 113 bits (283), Expect = 7e-24, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E+ E E F ++ +I + + E+++ D+ Sbjct: 1 MSQVILDLQLACEDNSGLPE-------ESQFQTWLNAVIPQF----QEESEVTIRVVDTA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +LN YRG DKPTNVLSFP G +LGD+V+ +++E EA GK E H Sbjct: 50 ESHSLNLTYRGKDKPTNVLSFPFEV--PPGMEMSLLGDLVICRQMVEKEAQEQGKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153 >gi|229587097|ref|YP_002845598.1| putative metalloprotease [Rickettsia africae ESF-5] gi|259645703|sp|C3PLL5|RRMF_RICAE RecName: Full=Probable rRNA maturation factor gi|228022147|gb|ACP53855.1| Putative metal-dependent hydrolase [Rickettsia africae ESF-5] Length = 167 Score = 113 bits (283), Expect = 7e-24, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 86/169 (50%), Gaps = 12/169 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++++I W + + + + L+ F K ELS++ T++ I T Sbjct: 1 MINVEIVRNYNKWREYKQINKSLIKKITQNI--LLRFDNFSKIKQFELSILLTNAAEILT 58 Query: 70 LNFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 LN ++R I+K TNVLSFP+ D + LGDI YE+I E+ Sbjct: 59 LNKQFRNIEKATNVLSFPSNELNWQDLYSKLEFLDDSDYMHLGDIAFCYEVIYNESCEQH 118 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K FENH +HL+IH LHL+G+DH +D +A +ME LE IL GI PY Sbjct: 119 KTFENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEILSYFGIFPPY 167 >gi|145595964|ref|YP_001160261.1| putative metalloprotease [Salinispora tropica CNB-440] gi|189040145|sp|A4XAD4|RRMF_SALTO RecName: Full=Probable rRNA maturation factor gi|145305301|gb|ABP55883.1| protein of unknown function UPF0054 [Salinispora tropica CNB-440] Length = 157 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 19/160 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ D + + + + ELS++ D + L Sbjct: 1 MSIEIANESGADVDTDAVLAVARHALDEM----------GVNQLAELSVLLVDIDYMAEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGDIVLAYEIIEIEANVLGKE 121 N + G D PT+VL+FP S D G +LGDIVL E+ +A G Sbjct: 51 NHRWMGGDGPTDVLAFPMDEGSVDHGPGENAAAGAEPALLGDIVLCPEVAAKQAVTAGHS 110 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + L L +HG LHLLGYDH + ++ M L+ +L Sbjct: 111 TADELHLLTVHGVLHLLGYDHAEPEEEREMFALQARLLAS 150 >gi|311108331|ref|YP_003981184.1| metalloprotein, YbeY family protein [Achromobacter xylosoxidans A8] gi|310763020|gb|ADP18469.1| metalloprotein, YbeY family protein [Achromobacter xylosoxidans A8] Length = 157 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 46/114 (40%), Positives = 59/114 (51%), Gaps = 4/114 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 ELSL + LN ++RG D TNVL+F + GDIV+ ++ E Sbjct: 45 AELSLRLVGAAEGRRLNRDFRGRDYATNVLTFEYGVDPLG----VARGDIVMCVPVLVRE 100 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A K +H HL IHG LH LGYDH+ +DA ME LE + L D+ I DPY Sbjct: 101 AREQRKALLDHAAHLTIHGVLHALGYDHIKARDAKRMEALETATLADMRIADPY 154 >gi|257439766|ref|ZP_05615521.1| putative metalloprotease [Faecalibacterium prausnitzii A2-165] gi|257197786|gb|EEU96070.1| putative metalloprotease [Faecalibacterium prausnitzii A2-165] Length = 163 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 7/148 (4%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 + + + ++ +A + ++ +F + E+S+ F D+ I LN +YR PT+ Sbjct: 11 QKAVKVPSGLRILIRRACNAVLEYEHF--DEPAEISVTFVDNAAIAELNNQYRNKPMPTD 68 Query: 83 VLSFPTAFAS----SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 VLSFP + MLGDIV++ E + +A + G + + L +H LHLL Sbjct: 69 VLSFPLGENGVYDVDENNGCKMLGDIVISMERAQEQATLYGHPLQREVAFLTVHSMLHLL 128 Query: 139 GYDHVDDK-DACVMEGLERSILEDLGIN 165 GYDH + +A M E ++L LG+ Sbjct: 129 GYDHENGGLEAMRMREKEEAVLTQLGLP 156 >gi|120612878|ref|YP_972556.1| hypothetical protein Aave_4242 [Acidovorax citrulli AAC00-1] gi|145558826|sp|A1TUZ4|RRMF_ACIAC RecName: Full=Probable rRNA maturation factor gi|120591342|gb|ABM34782.1| protein of unknown function UPF0054 [Acidovorax citrulli AAC00-1] Length = 152 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 14/147 (9%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E H L + + + +S E+++ D+ + LN EYR D TNVL Sbjct: 19 EAHRAALPRHAVVRWIRHALSL-------DAEITVRIVDAEEGQALNREYRHKDYATNVL 71 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 +F A +++ D+VL ++E EA K H HL++HG LH G+DH Sbjct: 72 TFDYAQE------PVVMADLVLCAPVVEREAREQNKALHEHYAHLLVHGTLHAQGWDHET 125 Query: 145 D-KDACVMEGLERSILEDLGINDPYEV 170 +DA ME E +I+++LG DPY Sbjct: 126 SAEDADEMEAYETAIMQELGFADPYAD 152 >gi|241668688|ref|ZP_04756266.1| hypothetical protein FphipA2_07970 [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 158 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 54/160 (33%), Positives = 83/160 (51%), Gaps = 12/160 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L+L + ++ I + L E FA + E++L + I+ + Sbjct: 4 LNLNVINDDEH---PIPNQDLLEKCFALVADK-------HNISQAEVNLSIVSNQEIQQI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N ++R DKPTN++SF + + GDIV+A E+++ EA K ++H H Sbjct: 54 NKQFRHKDKPTNIISFEFEKPEGLPEDIADNFWGDIVIAPEVLKKEAKEQNKNLDDHWQH 113 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 + IHG LHLLGYDH+DD +A ME LE +L +LGI +PY Sbjct: 114 IFIHGLLHLLGYDHIDDIEAEEMENLEIELLAELGIANPY 153 >gi|83313564|ref|YP_423828.1| metal-dependent hydrolase [Magnetospirillum magneticum AMB-1] gi|123540295|sp|Q2VYQ6|RRMF_MAGSA RecName: Full=Probable rRNA maturation factor gi|82948405|dbj|BAE53269.1| Predicted metal-dependent hydrolase [Magnetospirillum magneticum AMB-1] Length = 164 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 92/161 (57%), Gaps = 7/161 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ + + W + + ++ + + + +VELS+V D ++ L Sbjct: 5 IEIAVDIPCPAWTEAMPDAE----ARCGRLAAIALGAVDLPDGVVELSIVLADDATVQGL 60 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG---CSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 N ++RG D+PTNVLSF + + L+LGD++LA+E EA+ GK +H Sbjct: 61 NRDWRGKDQPTNVLSFASLDDEDAPVVPGAPLLLGDVILAFETCAAEAHDQGKTLADHFS 120 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL++HG LHLLGYDH+DD++A ME LE ++L LGI+DPY Sbjct: 121 HLVVHGVLHLLGYDHMDDEEAAEMEALETTLLAALGIDDPY 161 >gi|300933262|ref|ZP_07148518.1| putative metalloprotease [Corynebacterium resistens DSM 45100] Length = 194 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ E++ L +V + + ELS+ D I L Sbjct: 1 MSIEVFNESGR--GEVNEEELIDVARYALWT-------LDVHSAAELSIHIVDLDTIADL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASS-------DGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + + + PT+V+SFP + S MLGDI+L + E +AN G Sbjct: 52 HERWLDLPGPTDVMSFPMDELTPGWGRKDGPPPSPAMLGDIMLCPDFAERQANRAGHSLA 111 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + L L +HG LHLLG+DH ++ M L+ IL + Sbjct: 112 HELDLLTVHGVLHLLGFDHTTPEEEQRMFSLQNEILAN 149 >gi|114770162|ref|ZP_01447700.1| hypothetical protein OM2255_11015 [alpha proteobacterium HTCC2255] gi|114548999|gb|EAU51882.1| hypothetical protein OM2255_11015 [alpha proteobacterium HTCC2255] Length = 172 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 23/181 (12%) Query: 1 MSVKKVNLPRLDL-QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSL 59 M +K+ +++ I +E+ W D ++ L + F+ L E+S+ Sbjct: 2 MQIKR---KMINIADIVIEDKRWSD-FGIQDLADRTFSIVFDVLNLS------KKWEISI 51 Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD------------GCSSLMLGDIVLA 107 + + +I LN +R TNVLS+P SD +LGDI ++ Sbjct: 52 LACNDAKIIELNSTFRDKPIATNVLSWPAHNLKSDFIGKTPNKPILSNIEENLLGDIAIS 111 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 ++ E EA F++H HL++HG LHLL YDH++D DA +ME LE +L+ +GI DP Sbjct: 112 FDTCEREAVESNLHFKDHTTHLLVHGCLHLLNYDHINDLDALIMEKLETQLLKVMGIADP 171 Query: 168 Y 168 Y Sbjct: 172 Y 172 >gi|256825018|ref|YP_003148978.1| hypothetical protein Ksed_11740 [Kytococcus sedentarius DSM 20547] gi|256688411|gb|ACV06213.1| conserved hypothetical protein TIGR00043 [Kytococcus sedentarius DSM 20547] Length = 166 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ VE+ D + + + EL + F D+ IE L Sbjct: 1 MTIEVLVEDDPLTDPDDVVAAAQ----------FAMDTLHVNPAAELCIRFVDAAAIEVL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD----GCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ + PT+V+SFP +LGDIVL + +A+ LG L Sbjct: 51 HEQWMDLAGPTDVMSFPMDELRPGTPERPSEPGVLGDIVLCPTVAAEQASRLGHPVGEEL 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L +HG LHLLGYDH D D M L+ +L Sbjct: 111 LMLTVHGVLHLLGYDHADPDDEREMFTLQAELL 143 >gi|104783749|ref|YP_610247.1| putative metalloprotease [Pseudomonas entomophila L48] gi|122401726|sp|Q1I4H2|RRMF_PSEE4 RecName: Full=Probable rRNA maturation factor gi|95112736|emb|CAK17464.1| conserved hypothetical protein [Pseudomonas entomophila L48] Length = 157 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 72/136 (52%), Gaps = 5/136 (3%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 F + + + + E+++ D LN YR D TNVLSFP D Sbjct: 20 FRRWCELALRQ----RTADSEMTIRLVDEAEGRELNHTYRHKDYATNVLSFPAD-VPDDL 74 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 +LGD+V+ ++E EA GK E H HL+IHG LHLLGYDH++D +A ME LE Sbjct: 75 LDIPLLGDLVICVPVVEREAREQGKALEAHWAHLVIHGCLHLLGYDHIEDDEAEEMEALE 134 Query: 156 RSILEDLGINDPYEVD 171 R +L +LG DPY D Sbjct: 135 RELLAELGHPDPYADD 150 >gi|326318913|ref|YP_004236585.1| hypothetical protein Acav_4129 [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375749|gb|ADX48018.1| protein of unknown function UPF0054 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 152 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 14/142 (9%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 L A+ + + ++ E+++ D+ + LN EYR D TNVL+F A Sbjct: 24 ALPRHAVARWIRHALAT-------DAEITVRIVDAEEGQALNREYRHKDYATNVLTFDYA 76 Query: 90 FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD-KDA 148 +++ D+VL ++E EA K H HL++HG LH G+DH +DA Sbjct: 77 QE------PVVMADLVLCAPVVEREAREQNKALHEHYAHLLVHGTLHAQGWDHETSAEDA 130 Query: 149 CVMEGLERSILEDLGINDPYEV 170 ME E +I+++LG DPY Sbjct: 131 DEMEAYETAIMQELGFADPYAD 152 >gi|311742996|ref|ZP_07716804.1| cupin domain protein [Aeromicrobium marinum DSM 15272] gi|311313676|gb|EFQ83585.1| cupin domain protein [Aeromicrobium marinum DSM 15272] Length = 158 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 20/166 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ + E+ + D + L LC V + + EL+L D+ I L Sbjct: 1 MNVDVLNESGVEADVLDLTRLCRFVMRRMRLH----------PATELTLRLVDADTIAVL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 N ++ G D PT+VLSFP + + LGDI L ++ E +A G + + Sbjct: 51 NRQWMGKDGPTDVLSFPMDELTPGRDDEESPEGYLGDIALCPQVAEQQAPAAGHTTADEV 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL-----EDLGINDP 167 L +HG LHLLGYDH + + M GL+ +L LG+ DP Sbjct: 111 DLLTVHGILHLLGYDHAEPDEHREMFGLQGRLLVEWQRAALGL-DP 155 >gi|218688476|ref|YP_002396688.1| putative metalloprotease [Escherichia coli ED1a] gi|254807366|sp|B7MPH5|RRMF_ECO81 RecName: Full=Probable rRNA maturation factor YbeY gi|218426040|emb|CAR06857.1| putative metal-dependent hydrolase [Escherichia coli ED1a] Length = 155 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 89/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E+ E E F ++ +I + + E+++ D+ Sbjct: 1 MSQVILDLQLACEDNSGLPE-------ESQFQTWLNAVIPQF----QEESEVTIRVVDTA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP G +LGD+++ +++E EA GK E H Sbjct: 50 ESHCLNLTYRGKDKPTNVLSFPFEV--PPGMEMSLLGDLIICRQVVEKEAQEQGKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME +E I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMEAIETEIMLALGYEDPYIAE 153 >gi|160896671|ref|YP_001562253.1| hypothetical protein Daci_1224 [Delftia acidovorans SPH-1] gi|238687183|sp|A9BUG5|RRMF_DELAS RecName: Full=Probable rRNA maturation factor gi|160362255|gb|ABX33868.1| protein of unknown function UPF0054 [Delftia acidovorans SPH-1] Length = 152 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 14/139 (10%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 L + + + ++ E+++ D+ + LN EYR D TNVL+F Sbjct: 25 LSRSKVTRWIRHALAV-------DAEITVRIVDAEEGQQLNREYRQKDYATNVLTFDYQQ 77 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDAC 149 + D+VL ++E EA K E H HL++HG LH G+DH ++DA Sbjct: 78 E------PTAMADLVLCAPVVEREAREQNKTLEEHYAHLLVHGTLHAQGWDHETSEQDAE 131 Query: 150 VMEGLERSILEDLGINDPY 168 ME E I+ +LG DPY Sbjct: 132 EMEAYETEIMVELGFADPY 150 >gi|255291932|dbj|BAH90420.1| hypothetical protein [uncultured bacterium] Length = 155 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 7/133 (5%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 V+ + + E+++ LN ++R D TNVL+F + A Sbjct: 27 RHRVARWLRAALGEQVQAAEITVRIVGDDEGRQLNRDFRARDYATNVLTFDYSGA----- 81 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLE 155 L+ D+VL ++ EA GK +H HL++HG LH G++H D+DA ME E Sbjct: 82 -PLVAADLVLCAPVVAREAAEQGKPLADHYAHLLVHGALHAQGWEHETSDEDAEAMEAHE 140 Query: 156 RSILEDLGINDPY 168 ++L LG+ DPY Sbjct: 141 SAVLTGLGLPDPY 153 >gi|238752612|ref|ZP_04614085.1| metalloprotease [Yersinia rohdei ATCC 43380] gi|238709203|gb|EEQ01448.1| metalloprotease [Yersinia rohdei ATCC 43380] Length = 117 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 45/115 (39%), Positives = 65/115 (56%), Gaps = 2/115 (1%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +++ D LN YRG DK TNVLSFP + +LGD+++ +++E EA Sbjct: 1 MTIRIVDEAESHELNLTYRGKDKSTNVLSFPFE--APPEIELPLLGDLIICRQVVEQEAI 58 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K H H+++HG LHLLGYDH+ D +A ME +E I++ LG DPY + Sbjct: 59 EQEKALLAHWAHMVVHGSLHLLGYDHIVDDEAEEMESIETEIMQSLGYPDPYISE 113 >gi|302869293|ref|YP_003837930.1| hypothetical protein Micau_4845 [Micromonospora aurantiaca ATCC 27029] gi|315504232|ref|YP_004083119.1| hypothetical protein ML5_3454 [Micromonospora sp. L5] gi|302572152|gb|ADL48354.1| protein of unknown function UPF0054 [Micromonospora aurantiaca ATCC 27029] gi|315410851|gb|ADU08968.1| protein of unknown function UPF0054 [Micromonospora sp. L5] Length = 157 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 19/160 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ + D + + + + ELS++ D + L Sbjct: 1 MSIEIANESGVDVDTDAVLAVARHALDEM----------GVNPLAELSVLLVDIEYMSEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF---------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 N + G D PT+VL+FP ++ G +LGDIVL E+ +A V G Sbjct: 51 NHRWMGGDGPTDVLAFPMDEGSVDHGPGESNPAGGEPALLGDIVLCPEVAAKQAAVAGHS 110 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + L L +HG LHLLGYDH + ++ M GL+ +L Sbjct: 111 AADELHLLTVHGVLHLLGYDHAEPEEEREMFGLQARLLAS 150 >gi|330469595|ref|YP_004407338.1| metal-binding heat shock protein [Verrucosispora maris AB-18-032] gi|328812566|gb|AEB46738.1| metal-binding heat shock protein [Verrucosispora maris AB-18-032] Length = 157 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 19/160 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ + D + + + + ELS++ D + L Sbjct: 1 MSIEIANESGVAVDTDAVLAVARHALDEM----------GVNPLAELSVLLVDVGYMTEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGDIVLAYEIIEIEANVLGKE 121 N + G D PT+VL+FP S D G +LGDIVL E+ +A G Sbjct: 51 NHRWMGGDGPTDVLAFPMDEGSIDHGPGENAAVGGEPALLGDIVLCPEVAAKQAATAGHS 110 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 ++ L L +HG LHLLGYDH + ++ M GL+ +L Sbjct: 111 ADDELHLLTVHGVLHLLGYDHAEPEEEREMFGLQARLLSS 150 >gi|145223294|ref|YP_001133972.1| putative metalloprotease [Mycobacterium gilvum PYR-GCK] gi|315443754|ref|YP_004076633.1| hypothetical protein Mspyr1_21440 [Mycobacterium sp. Spyr1] gi|189039754|sp|A4T2C0|RRMF_MYCGI RecName: Full=Probable rRNA maturation factor gi|145215780|gb|ABP45184.1| protein of unknown function UPF0054 [Mycobacterium gilvum PYR-GCK] gi|315262057|gb|ADT98798.1| conserved hypothetical protein TIGR00043 [Mycobacterium sp. Spyr1] Length = 178 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V K ELS+V D+ + L Sbjct: 1 MSIEVSNESGIDVSESELVSVARFVIRKM----------DVNPAAELSMVLLDTAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP MLGDIVL E +A G Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDTPEPGPSMLGDIVLCPEFAAKQAADAGHTLGQ 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L L +HG LHLLGYDH + + M L+R +LE+ Sbjct: 111 ELALLTVHGVLHLLGYDHAEPDEEKEMFALQRELLEE 147 >gi|328675995|gb|AEB28670.1| hypothetical protein FN3523_0813 [Francisella cf. novicida 3523] Length = 162 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 12/160 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L++ + ++ + + K + + K + E+++ + I+ + Sbjct: 4 LNINLINDDEY-------PIPSQDLLLKCLQLVADKHNI---SHAEVNVNIVSNDEIQQI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N ++R DKPTN++SF + + LGDIV+A ++E EA GKE +H H Sbjct: 54 NKQFRNKDKPTNIISFEFEKPQGLPEDIADDFLGDIVIAPAVLEKEAKEQGKELNHHWQH 113 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 + IHG LHLLGYDH DD++A VME LE +L LGI +PY Sbjct: 114 IFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGIANPY 153 >gi|256375388|ref|YP_003099048.1| metalloprotease [Actinosynnema mirum DSM 43827] gi|255919691|gb|ACU35202.1| protein of unknown function UPF0054 [Actinosynnema mirum DSM 43827] Length = 187 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 16/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ DE + + + ELS++ + + L Sbjct: 1 MSIEIANESGAQVDEASIVAAARFALDRM----------GVSPLAELSVLLVELDVMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD------GCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V++FP S G +LGDIVL E +A G + Sbjct: 51 HQRWMDLPGPTDVMAFPMDELDSARRPDAAGLGPALLGDIVLCPAFAEDQAAKAGHSLMD 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L L +HG LHLLGYDH + + M L+ IL Sbjct: 111 ELHLLTVHGVLHLLGYDHAEPAEEREMFTLQNRIL 145 >gi|241766518|ref|ZP_04764382.1| protein of unknown function UPF0054 [Acidovorax delafieldii 2AN] gi|241363251|gb|EER58810.1| protein of unknown function UPF0054 [Acidovorax delafieldii 2AN] Length = 152 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 73/167 (43%), Gaps = 21/167 (12%) Query: 6 VNLPRLDLQIAV---ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 + L L L + E+A + R A++ E+++ Sbjct: 1 MTLNHLSLSLQFGRFEDAAAHRAVLPRHKVTRWIRHALAA-----------DAEITVRIV 49 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 D+ + LN +YR D TNVL+F A +++ D+VL ++E EA K Sbjct: 50 DADEGQALNRDYRHKDYATNVLTFDYAQE------PVVMADLVLCAPVVEREAREQNKTL 103 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGINDPY 168 E H HL++HG LH G+DH DA ME E IL+ LG DPY Sbjct: 104 EEHYAHLLVHGTLHAQGWDHETSATDAEEMEAYETDILQALGFADPY 150 >gi|294341620|emb|CAZ90037.1| putative metal-dependent hydrolase [Thiomonas sp. 3As] Length = 175 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 73/169 (43%), Gaps = 13/169 (7%) Query: 7 NLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKE-----NIVELSLVF 61 P L L + + D++ R L A+ + + +++L F Sbjct: 8 TKPALRLSVQFADTTHRDQLP-RALLLRWVRAALRVGPESLDALPQAGALSEAHQITLRF 66 Query: 62 TDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 + LN YRG D PTNVL+F + DIVL ++ EA K Sbjct: 67 VAADEGRALNRAYRGKDYPTNVLTFDYN-------HWPVQADIVLCCPVVAGEALAQHKP 119 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 H HL+IHG LH G+DH +++A ME E ++L+ GI+DPY Sbjct: 120 LGAHYAHLVIHGLLHAQGWDHQTEREAQKMERQEVTVLQRFGISDPYAD 168 >gi|254373021|ref|ZP_04988510.1| conserved hypothetical protein [Francisella tularensis subsp. novicida GA99-3549] gi|151570748|gb|EDN36402.1| conserved hypothetical protein [Francisella novicida GA99-3549] Length = 168 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 12/168 (7%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 +K+ + L++ ++ + + K + + K + + E++L Sbjct: 2 KRKLKMDNLNINFINDDEH-------PIPSQDLLLKCLQLVADKHHI---SHAEVNLSIV 51 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGK 120 + I+ +N ++R DKPTN++SF D ++ LGDIV+A ++E EA K Sbjct: 52 SNDEIQQINKQFRNKDKPTNIISFEFEKPQGLPDDIANDFLGDIVIAPAVLENEAKEQNK 111 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E +H H+ IHG LHLLGYDH DD++A VME LE +L LGI +PY Sbjct: 112 ELNDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGIANPY 159 >gi|157826181|ref|YP_001493901.1| putative metalloprotease [Rickettsia akari str. Hartford] gi|166229073|sp|A8GPR8|RRMF_RICAH RecName: Full=Probable rRNA maturation factor gi|157800139|gb|ABV75393.1| hypothetical protein A1C_05790 [Rickettsia akari str. Hartford] Length = 167 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 12/169 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++++I W + + + + L+ F K ELS++ T++ I T Sbjct: 1 MINVEIIKNYDKWREHKQINKSLIQKITQNI--LLRFNNFSKIKQFELSMLLTNTAEILT 58 Query: 70 LNFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 LN ++R I+K TNVL+FP+ + LGD+ YE+I E+ Sbjct: 59 LNKQFRNIEKATNVLAFPSNELNWQDLYSKLEFLGDSDYMHLGDVAFCYEVIYNESCEQQ 118 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K FENH +HL+IH LHL+G+DH +D +A +ME LE IL GI+ PY Sbjct: 119 KTFENHFIHLLIHSILHLIGFDHQNDTEAHIMENLEIEILSYFGISSPY 167 >gi|15893065|ref|NP_360779.1| putative metalloprotease [Rickettsia conorii str. Malish 7] gi|238650628|ref|YP_002916480.1| putative metalloprotease [Rickettsia peacockii str. Rustic] gi|26006916|sp|Q92GI1|RRMF_RICCN RecName: Full=Probable rRNA maturation factor gi|259646950|sp|C4K1I1|RRMF_RICPU RecName: Full=Probable rRNA maturation factor gi|15620268|gb|AAL03680.1| unknown [Rickettsia conorii str. Malish 7] gi|238624726|gb|ACR47432.1| putative metalloprotease [Rickettsia peacockii str. Rustic] Length = 167 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 85/169 (50%), Gaps = 12/169 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++++I W + + + + L+ F K ELS++ T++ I T Sbjct: 1 MINVEIVRNYNKWREHKQINKSLIKKITQNI--LLRFDNFSKIKQFELSILLTNAAEILT 58 Query: 70 LNFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 LN ++R I+K TNVLSFP+ + LGDI YE+I E+ Sbjct: 59 LNKQFRNIEKATNVLSFPSNELNWQDLYSKLEFLGDSDYMHLGDIAFCYEVIYNESCEQH 118 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K FENH +HL+IH LHL+G+DH +D +A +ME LE IL GI PY Sbjct: 119 KTFENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEILSYFGIFPPY 167 >gi|94676735|ref|YP_588542.1| hypothetical protein BCI_0064 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|145572748|sp|Q1LU22|RRMF_BAUCH RecName: Full=Probable rRNA maturation factor gi|94219885|gb|ABF14044.1| conserved hypothetical protein [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 155 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A ++ L + + E+++ D Sbjct: 1 MSKIILDLQVACDHRCNLPSEDL-----------FMYWLYMVLPLFRKKAEVTIRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG + TNVLSFP F + ++LGDI++ +++E EA K E + Sbjct: 50 ESYNLNKIYRGQNHSTNVLSFP--FKAPSPVKLVLLGDIIICRQVVEREAQEQNKILEAY 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH +++A ME LE I+ LG +PYE + Sbjct: 108 WAHMVIHGSLHLLGYDHFIEQNAKKMEYLETKIMHKLGYLNPYETE 153 >gi|52081079|ref|YP_079870.1| putative metalloprotease [Bacillus licheniformis ATCC 14580] gi|52786458|ref|YP_092287.1| putative metalloprotease [Bacillus licheniformis ATCC 14580] gi|319644963|ref|ZP_07999196.1| metalloprotease [Bacillus sp. BT1B_CT2] gi|59799095|sp|Q65H70|RRMF_BACLD RecName: Full=Probable rRNA maturation factor gi|52004290|gb|AAU24232.1| Conserved hypothetical protein [Bacillus licheniformis ATCC 14580] gi|52348960|gb|AAU41594.1| YqfG [Bacillus licheniformis ATCC 14580] gi|317392772|gb|EFV73566.1| metalloprotease [Bacillus sp. BT1B_CT2] Length = 158 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 6/128 (4%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------ 97 + + E+S+ ++ I+ +N EYRG D PT+V+SF Sbjct: 28 FAAAEEGVADGAEVSVTIVNNEEIQKINKEYRGKDYPTDVISFALEEDGEGEVEIIGADM 87 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 +LGDI+++ + +A G L L +HGFLHLLGYDH+ +++ M ++ Sbjct: 88 PPVLGDIIISVDKAREQAEEYGHSLMRELGFLTVHGFLHLLGYDHMTEEEEKEMFTKQKE 147 Query: 158 ILEDLGIN 165 IL G++ Sbjct: 148 ILNRYGLS 155 >gi|312898796|ref|ZP_07758184.1| conserved hypothetical protein TIGR00043 [Megasphaera micronuciformis F0359] gi|310619958|gb|EFQ03530.1| conserved hypothetical protein TIGR00043 [Megasphaera micronuciformis F0359] Length = 157 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 72/157 (45%), Gaps = 10/157 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I EN + E + + + ELS+V D+ I L Sbjct: 1 MKVRITYENKATEKK-----EYENIIESVCKE--GAYIYGLDEDAELSVVLCDNAYIHEL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIEIEANVLGKEFENHLV 127 N YR ID+PT+VLSF +G LGDIV++ + ++ G FE L Sbjct: 54 NKTYRNIDRPTDVLSFALNEGEEEGYDGPDTKLLGDIVISLDKTREQSEEYGHSFERELA 113 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +L +HG LH+LGYDH+ D+D M E +L LG Sbjct: 114 YLTVHGMLHILGYDHMTDEDKAEMRKEEEFVLHRLGF 150 >gi|238920800|ref|YP_002934315.1| hypothetical protein NT01EI_2926 [Edwardsiella ictaluri 93-146] gi|259646922|sp|C5BGB7|RRMF_EDWI9 RecName: Full=Probable rRNA maturation factor gi|238870369|gb|ACR70080.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 157 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTL-CEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A L+ L E F + + ++ + + E+++ D Sbjct: 1 MSNIILDLQLAC--------ADLQGLPAEGDFLRWLEAVLPRF----RDEAEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG D+PTNVLSFP + G +LGD+V+ +++E EA + Sbjct: 49 AESHELNLTYRGKDRPTNVLSFPFE--APPGIELPLLGDMVICRQVVEREAQEQNISQLS 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH+ D++A ME LE I++ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHISDEEAEEMESLEAEIMQVLGYPDPYAAE 153 >gi|237809458|ref|YP_002893898.1| hypothetical protein Tola_2719 [Tolumonas auensis DSM 9187] gi|259646893|sp|C4LBN8|RRMF_TOLAT RecName: Full=Probable rRNA maturation factor gi|237501719|gb|ACQ94312.1| protein of unknown function UPF0054 [Tolumonas auensis DSM 9187] Length = 155 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 57/162 (35%), Positives = 84/162 (51%), Gaps = 14/162 (8%) Query: 11 LDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA ++ E + + + E+++ D Sbjct: 5 LDLQIACADSTGLPSETQFQQWLDTAV------------LPFQQEAEVTIRLVDEAESNE 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP + +LGD+++ +++E EA K E+H H+ Sbjct: 53 LNLTYRGKDKPTNVLSFPF-ECPPEVEDFPLLGDLIICRQVVEKEALEQQKTLESHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH++D++A ME LE+ ++ LG DPY+ D Sbjct: 112 VIHGSLHLLGYDHIEDEEAEEMEALEKEFMQTLGFPDPYKDD 153 >gi|121610982|ref|YP_998789.1| hypothetical protein Veis_4066 [Verminephrobacter eiseniae EF01-2] gi|145558824|sp|A1WQ64|RRMF_VEREI RecName: Full=Probable rRNA maturation factor gi|121555622|gb|ABM59771.1| protein of unknown function UPF0054 [Verminephrobacter eiseniae EF01-2] Length = 154 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 13/139 (9%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 L + + + + ++ E+++ + LN YR D TNVL+F + Sbjct: 24 ALPRHLIRRWIRHALTT-------DAEITVRIVGADEGRQLNRTYRNKDYATNVLTFVYS 76 Query: 90 FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 A L+ D++L +IE EA GK + H H+++HG LH G+DH DA Sbjct: 77 QA------PLVTADLLLCAPVIEREAQQQGKHLQAHYAHMLVHGTLHAQGWDHEGSADAD 130 Query: 150 VMEGLERSILEDLGINDPY 168 M+ E I++ LG DPY Sbjct: 131 AMQARETQIMQALGFADPY 149 >gi|330828615|ref|YP_004391567.1| metalloprotease [Aeromonas veronii B565] gi|328803751|gb|AEB48950.1| metalloprotease [Aeromonas veronii B565] Length = 154 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 53/135 (39%), Positives = 76/135 (56%), Gaps = 2/135 (1%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 + + + E+++ D LN YRG DKPTNVLSFP + G Sbjct: 20 EAQLQGWLDGTILGFQQEAEVTVRIVDEAESNELNLTYRGKDKPTNVLSFPFE--APPGL 77 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 +LGD+V+ +++E EA GK H H+++HG LHLLGYDH++D++A ME LER Sbjct: 78 ELPLLGDLVICRQVVEREAEEQGKPLMAHWAHMVVHGSLHLLGYDHIEDEEAEEMEALER 137 Query: 157 SILEDLGINDPYEVD 171 I+++LG DPY D Sbjct: 138 DIMQELGFADPYLND 152 >gi|254470656|ref|ZP_05084059.1| diacyglycerol kinase [Pseudovibrio sp. JE062] gi|211959798|gb|EEA94995.1| diacyglycerol kinase [Pseudovibrio sp. JE062] Length = 168 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 87/158 (55%), Gaps = 5/158 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + + +E W E L + E ++ + E+SLVFTD I+ LN Sbjct: 9 IDLLIEAGDWESEETLEAIAEKA----IAAAFATSDLSVIENTEVSLVFTDDAHIQELNK 64 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +R DKPTNVLSFP + L LGDI++A E ++ EA LG FE+HL+HLI+H Sbjct: 65 MWRQKDKPTNVLSFPGDDSEEPPFGPL-LGDIIIANETVKREAVELGIPFEHHLIHLIVH 123 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 G LHL GYDH D++A ME ER IL L I DPY+ Sbjct: 124 GTLHLFGYDHQIDEEAEEMEAEERLILASLQIPDPYKD 161 >gi|157804110|ref|YP_001492659.1| putative metalloprotease [Rickettsia canadensis str. McKiel] gi|166227281|sp|A8EZU1|RRMF_RICCK RecName: Full=Probable rRNA maturation factor gi|157785373|gb|ABV73874.1| hypothetical protein A1E_04765 [Rickettsia canadensis str. McKiel] Length = 172 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 86/174 (49%), Gaps = 17/174 (9%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++++I W + + + V L+ F K ELS++ T++ I T Sbjct: 1 MINVEIIRNYDKWREHKQINKALIKKVTQNV--LLRFDNFSKIKQFELSILLTNTAEILT 58 Query: 70 LNFEYRGIDKPTNVLSFPTAFAS---------------SDGCSSLMLGDIVLAYEIIEIE 114 LN ++R IDK TNVLSFP+ + G + LGDI YE+I E Sbjct: 59 LNKQFRNIDKATNVLSFPSNKLNWQDLCFSNVSPKLELLIGYDYMHLGDIAFCYEVIYNE 118 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 + K ENH +HL+IH LHL+G+DH +D +A +ME LE IL GI PY Sbjct: 119 SYEQQKTSENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEILSYFGIASPY 172 >gi|149192274|ref|ZP_01870486.1| hypothetical protein VSAK1_11415 [Vibrio shilonii AK1] gi|148833889|gb|EDL50914.1| hypothetical protein VSAK1_11415 [Vibrio shilonii AK1] Length = 154 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 60/163 (36%), Positives = 88/163 (53%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQIAVE+ + + K ++ + EL++ D + Sbjct: 3 IELDLQIAVESEQ---GLPSADEFQGWLDKTITPF--------QQDAELTIRIVDEEESQ 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN +YRG DKPTNVLSFP + G +LGD+++ +++E EA K H H Sbjct: 52 QLNRDYRGKDKPTNVLSFPFE--APPGVEMDLLGDMIICRQVVEKEAIEQSKPLIAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I+ D+G +DPY V+ Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMEALETEIMLDMGFDDPYLVE 152 >gi|34581258|ref|ZP_00142738.1| hypothetical protein [Rickettsia sibirica 246] gi|28262643|gb|EAA26147.1| unknown [Rickettsia sibirica 246] Length = 167 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 85/169 (50%), Gaps = 12/169 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++++I W + + + + L+ F K ELS++ T++ I T Sbjct: 1 MINVEIVRNYNKWREHKQINKSLIKKITQNI--LLRFDNFSKIKQFELSILLTNAAEILT 58 Query: 70 LNFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 LN ++R I+K TNVLSFP+ + LGDI YE+I E+ Sbjct: 59 LNKQFRNIEKATNVLSFPSNELNWQDLYSKLEFLGDSDYMHLGDIAFCYEVIYNESCEQH 118 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K FENH +HL+IH LHL+G+DH +D +A +ME LE IL GI PY Sbjct: 119 KTFENHFIHLLIHSILHLIGFDHQNDTEANIMEDLEIEILSYFGIFPPY 167 >gi|78043035|ref|YP_359288.1| hypothetical protein CHY_0427 [Carboxydothermus hydrogenoformans Z-2901] gi|123576940|sp|Q3AEZ6|RRMF_CARHZ RecName: Full=Probable rRNA maturation factor gi|77995150|gb|ABB14049.1| conserved hypothetical protein TIGR00043 [Carboxydothermus hydrogenoformans Z-2901] Length = 143 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 47/148 (31%), Positives = 75/148 (50%), Gaps = 8/148 (5%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 E D++ + + +AVS +++ +S+ D++ I++LN EYR Sbjct: 3 EITNLQDKVDVDETLLNIITQAVSLTLNEEGRAGV----VSIALVDNNYIQSLNREYRQK 58 Query: 78 DKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 D PT+VLSFP A D LGD+V++ E +A G F + L +HG LHL Sbjct: 59 DVPTDVLSFPLADDKDDEV----LGDVVISLEKAAEQAKEYGHSFFREVAFLTVHGVLHL 114 Query: 138 LGYDHVDDKDACVMEGLERSILEDLGIN 165 LG+DH ++++ +M E IL LG+ Sbjct: 115 LGHDHYEEEETRIMREKEEKILSALGLE 142 >gi|258651805|ref|YP_003200961.1| hypothetical protein Namu_1577 [Nakamurella multipartita DSM 44233] gi|258555030|gb|ACV77972.1| protein of unknown function UPF0054 [Nakamurella multipartita DSM 44233] Length = 186 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 16/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E+ + DEI L ++ V + + ELS++ D + L Sbjct: 1 MTIEVANESGVPVDEIVLVSVARYVLDRM----------RINPLAELSILLVDVEAMTEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + ++ PT+V+SFP G +LGD+VL + +A G ++ Sbjct: 51 HVKWMDEPGPTDVMSFPMDELDTARRPDESGPGPALLGDVVLCPAVAAEQATAAGHSVQD 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L L +HG LHLLGYDH + M L+ +L Sbjct: 111 ELHLLTVHGVLHLLGYDHAEPAQEREMFRLQNELL 145 >gi|323703317|ref|ZP_08114967.1| protein of unknown function UPF0054 [Desulfotomaculum nigrificans DSM 574] gi|323531680|gb|EGB21569.1| protein of unknown function UPF0054 [Desulfotomaculum nigrificans DSM 574] Length = 153 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 50/148 (33%), Positives = 69/148 (46%), Gaps = 5/148 (3%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 + +EI + + V + + E E+ L+F D I++LN EYRGIDK Sbjct: 6 SNLQEEIPVEDNLYQLVEAVVMESLKAEGYSTE--AEVGLIFVDDGYIQSLNAEYRGIDK 63 Query: 80 PTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 PT+VLSF LGDIV++ ++ G FE + L HG LH Sbjct: 64 PTDVLSFAMHEGEPMPEEEEAEDLLGDIVISLPTALRQSKEYGHSFEREVAFLTAHGALH 123 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGI 164 LLGYDH + + VM E +IL L I Sbjct: 124 LLGYDHQTEAERQVMREKEEAILGRLNI 151 >gi|171464143|ref|YP_001798256.1| protein of unknown function UPF0054 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193681|gb|ACB44642.1| protein of unknown function UPF0054 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 157 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 14/169 (8%) Query: 1 MSVKKVNL-PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSL 59 MS + + P+L + + +A + + K V + G ++L Sbjct: 1 MSTNRKTMSPKLVIDLQYASATIESTLGKIA-SPTLMKKWVKSATPLGGL-------ITL 52 Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 F ++ + LN +R D TNVL+FP A + +D + DI+ +++ EA Sbjct: 53 RFVNTTEGKKLNLAFRQKDYATNVLTFPYALSKND-----LAADIIFCLPVLQKEAKEQD 107 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K + HL HLI+HG LH GYDH KDA ME LE ILE LG +PY Sbjct: 108 KLLKAHLAHLIVHGCLHAQGYDHELTKDAKKMEALEIHILEKLGFANPY 156 >gi|322833886|ref|YP_004213913.1| hypothetical protein Rahaq_3192 [Rahnella sp. Y9602] gi|321169087|gb|ADW74786.1| protein of unknown function UPF0054 [Rahnella sp. Y9602] Length = 157 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 88/167 (52%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 +N LDLQIA E+A E +T E V + E+++ D Sbjct: 1 MNTVILDLQIACEDAAGLPSENDFQTWLEAVL------------PQFQEESEVTIRLVDI 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG+DKPTNVLSFP + G +LGD+++ +++E EA KE Sbjct: 49 PESHELNMTYRGMDKPTNVLSFPFE--APPGMEMPLLGDLIICRQVVEKEAKEQDKELLA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H++IHG LHLLGYDH+ D++A ME +E I++ LG DPY + Sbjct: 107 HWAHMVIHGSLHLLGYDHIVDEEAEEMESIETEIMQGLGYPDPYISE 153 >gi|307293144|ref|ZP_07572990.1| protein of unknown function UPF0054 [Sphingobium chlorophenolicum L-1] gi|306881210|gb|EFN12426.1| protein of unknown function UPF0054 [Sphingobium chlorophenolicum L-1] Length = 166 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +++ + E W D L + A+ + + E + E+++ T + Sbjct: 1 MIEVAVLHEQG-WPD-TDWELLAQRAVVAAIMHSPYAAFAADEALYEVAVKLTSDEEVHQ 58 Query: 70 LNFEYRGIDKPTNVLSFPT------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 LN YR DKPTNVLSFP ++ ++LGDIVLA + EA G Sbjct: 59 LNRAYRDKDKPTNVLSFPMVQADLLEATANTDDGEVILGDIVLAEGVCAAEAAEKGISVA 118 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +H HLI+HG HLLGYDH++D +A ME LE L LGI+DPY Sbjct: 119 DHATHLIVHGTFHLLGYDHMEDAEAEAMEALETQSLVSLGISDPYGD 165 >gi|317491141|ref|ZP_07949577.1| hypothetical protein HMPREF0864_00340 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920688|gb|EFV42011.1| hypothetical protein HMPREF0864_00340 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 164 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 86/167 (51%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQIA EN E R E V K + E+++ D Sbjct: 8 MSNVILDLQIACENTEGLPAEADFRLWLEAVLPK------------FQEEAEVTIRLVDE 55 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA + Sbjct: 56 AESHELNMTYRGKDKPTNVLSFPFE--APPGIELPLLGDMIICRQVVEAEAKEQEITLLS 113 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH+ D++A ME LE I+++LG DPY + Sbjct: 114 HWAHMVVHGSLHLLGYDHIIDEEAEEMEALEAEIMQELGYPDPYAAE 160 >gi|117622868|ref|YP_851781.1| putative metalloprotease [Escherichia coli APEC O1] gi|145558845|sp|A1A8S7|RRMF_ECOK1 RecName: Full=Probable rRNA maturation factor YbeY gi|115511992|gb|ABJ00067.1| putative metal-dependent hydrolase [Escherichia coli APEC O1] Length = 155 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 89/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E+ E E F ++ +I + + E+++ D+ Sbjct: 1 MSQVILDLQLACEDNSGLPE-------ESQFQTWLNAVIPQF----QEESEVTIRVVDTA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +LN YRG DKPTNVLSFP G +LGD+V+ +++E EA GK E H Sbjct: 50 ESHSLNLTYRGKDKPTNVLSFPFEV--PPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ L DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALDYEDPYIAE 153 >gi|120404789|ref|YP_954618.1| putative metalloprotease [Mycobacterium vanbaalenii PYR-1] gi|145558818|sp|A1TBR2|RRMF_MYCVP RecName: Full=Probable rRNA maturation factor gi|119957607|gb|ABM14612.1| protein of unknown function UPF0054 [Mycobacterium vanbaalenii PYR-1] Length = 184 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V K ELS++ D+ + L Sbjct: 1 MTIEVSNESGIDVSEEELISVARFVIGKM----------DVNPAAELSMLLLDTAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP MLGDIVL E +A G Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPSMLGDIVLCPEFAAKQAADAGHTLGQ 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L L +HG LHLLGYDH + + M L+R +LE+ Sbjct: 111 ELALLTVHGVLHLLGYDHAEPDEEKEMFALQRELLEE 147 >gi|323163922|gb|EFZ49731.1| hypothetical protein SS53G_5761 [Shigella sonnei 53G] gi|323184986|gb|EFZ70353.1| hypothetical protein ECOK1357_1645 [Escherichia coli 1357] Length = 152 Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 62/161 (38%), Positives = 88/161 (54%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A E+ E E F ++ +I + + E+++ D+ +L Sbjct: 3 LDLQLACEDNSGLPE-------ESQFQTWLNAVIPQF----QEESEVTIRVVDTAESHSL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP G +LGD+V+ +++E EA GK E H H++ Sbjct: 52 NLTYRGKDKPTNVLSFPFEV--PPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHMV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 110 VHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 150 >gi|224542132|ref|ZP_03682671.1| hypothetical protein CATMIT_01307 [Catenibacterium mitsuokai DSM 15897] gi|224524969|gb|EEF94074.1| hypothetical protein CATMIT_01307 [Catenibacterium mitsuokai DSM 15897] Length = 155 Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 8/157 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ +N + + E F + + E+ VE+S V D RI + Sbjct: 1 MNIDFVFDNEV----DNFENNYEQDFTAIIEQALKT--LGIEDDVEVSCVLVDDERIHEI 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLML--GDIVLAYEIIEIEANVLGKEFENHLVH 128 N EYR ID+ T+V+SF + GDI ++ + + +A G + Sbjct: 55 NREYRHIDRSTDVISFAMEDNDQFYVEGMPRTLGDIFISVDHAKKQAEEYGHSLRREMCF 114 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L HG LHLLGYDH+ D+ M GL+ IL L I Sbjct: 115 LFTHGILHLLGYDHMTDEQEKEMFGLQDEILGALSIE 151 >gi|56707741|ref|YP_169637.1| hypothetical protein FTT_0616c [Francisella tularensis subsp. tularensis SCHU S4] gi|110670212|ref|YP_666769.1| hypothetical protein FTF0616c [Francisella tularensis subsp. tularensis FSC198] gi|254370244|ref|ZP_04986250.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874554|ref|ZP_05247264.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|59799004|sp|Q5NH55|RRMF_FRATT RecName: Full=Probable rRNA maturation factor gi|123359556|sp|Q14IK7|RRMF_FRAT1 RecName: Full=Probable rRNA maturation factor gi|56604233|emb|CAG45249.1| cconserved hypothetical protein, UPF0054 family [Francisella tularensis subsp. tularensis SCHU S4] gi|110320545|emb|CAL08632.1| cconserved hypothetical protein, UPF0054 family [Francisella tularensis subsp. tularensis FSC198] gi|151568488|gb|EDN34142.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254840553|gb|EET18989.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] Length = 168 Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 12/168 (7%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 +K+ + L++ ++ L C + A + E++L Sbjct: 2 KRKLKMDNLNINFINDDEHPIPSQDLLLKCLQLVANK----------HHISHAEVNLNIV 51 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGK 120 + I+ +N ++R DKPTN++SF D ++ LGDIV+A ++E EA K Sbjct: 52 SNDEIQQINKQFRNKDKPTNIISFEFEKPQGLPDDIANDFLGDIVIAPAVLENEAKEQNK 111 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E +H H+ IHG LHLLGYDH DD++A VME LE +L LGI +PY Sbjct: 112 ELNDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGIANPY 159 >gi|254374471|ref|ZP_04989952.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|151572190|gb|EDN37844.1| conserved hypothetical protein [Francisella novicida GA99-3548] Length = 168 Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 12/168 (7%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 +K+ + L++ ++ + + K + + K + + E++L Sbjct: 2 KRKLKMDNLNINFINDDEH-------PIPSQDLLLKCLQLVADKHHI---SHAEVNLNIV 51 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGK 120 + I+ +N ++R DKPTN++SF D ++ LGDIV+A ++E EA K Sbjct: 52 SNDEIQQINKQFRNKDKPTNIISFEFEKPQGLPDDIANDFLGDIVIAPAVLENEAKEQNK 111 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E +H H+ IHG LHLLGYDH DD++A VME LE +L LGI +PY Sbjct: 112 ELNDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGIANPY 159 >gi|221064957|ref|ZP_03541062.1| protein of unknown function UPF0054 [Comamonas testosteroni KF-1] gi|220709980|gb|EED65348.1| protein of unknown function UPF0054 [Comamonas testosteroni KF-1] Length = 152 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 7/116 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 E+++ D+ LN EYR D TNVL+F ++ D+VL ++E Sbjct: 41 DAEITVRIVDAEEGRKLNREYRQKDYATNVLTFDYQQE------PTVMADLVLCAPVVER 94 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPY 168 EA K E H HL++HG LH G+DH ++DA ME E I++++G DPY Sbjct: 95 EAQEQNKTLEEHYAHLLVHGTLHAQGWDHETSEEDAEEMEAYETDIMKEMGYEDPY 150 >gi|189040309|sp|A8M0W3|RRMF_SALAI RecName: Full=Probable rRNA maturation factor Length = 157 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 19/159 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ + D + + + + ELS++ D + L Sbjct: 1 MSIEIANESGVDIDTDAVLAVARHALDEM----------GVNQLAELSVLLVDIDYMAEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGDIVLAYEIIEIEANVLGKE 121 N + G D PT+VL+FP S D G +LGDIVL E+ +A G Sbjct: 51 NHRWMGGDGPTDVLAFPMDEGSVDHGPGESAVAGTEPALLGDIVLCPEVAAKQAATAGHS 110 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + L L +HG LHLLGYDH + + M L+ +L Sbjct: 111 AADELHLLTVHGVLHLLGYDHAEPDEEREMFALQARLLA 149 >gi|226360377|ref|YP_002778155.1| metalloprotease [Rhodococcus opacus B4] gi|254807287|sp|C1AUK2|RRMF_RHOOB RecName: Full=Probable rRNA maturation factor gi|226238862|dbj|BAH49210.1| hypothetical protein [Rhodococcus opacus B4] Length = 180 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 16/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V A+ + ELS+V DS + L Sbjct: 1 MSIEVSNESGMDVSEEELISVARFVIARMDVH----------PAAELSMVLVDSATMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP MLGDIVL +A G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDSPEPGPSMLGDIVLCPSFAADQAEKAGHPLAH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L L +HG LHLLGYDH + ++ M GL+ +L Sbjct: 111 ELALLTVHGVLHLLGYDHAEPEEEKEMFGLQNQLL 145 >gi|312140288|ref|YP_004007624.1| hypothetical protein REQ_29270 [Rhodococcus equi 103S] gi|325677054|ref|ZP_08156724.1| metalloprotease [Rhodococcus equi ATCC 33707] gi|311889627|emb|CBH48944.1| conserved hypothetical protein [Rhodococcus equi 103S] gi|325552125|gb|EGD21817.1| metalloprotease [Rhodococcus equi ATCC 33707] Length = 180 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 16/156 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I+ E+ + + L ++ V A+ + ELS+V DS + L Sbjct: 1 MSIEISNESGMEVSDEDLISVARFVIARMDVH----------PAAELSMVLVDSSTMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP MLGDIVL +A G ++ Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPSMLGDIVLCPSFALEQAEKAGHSLDH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 L L +HG LHLLGYDH + ++ M GL+ +L Sbjct: 111 ELALLTVHGVLHLLGYDHAEPEEEKEMFGLQNQLLA 146 >gi|219870682|ref|YP_002475057.1| putative metalloprotease [Haemophilus parasuis SH0165] gi|254803906|sp|B8F457|RRMF_HAEPS RecName: Full=Probable rRNA maturation factor gi|219690886|gb|ACL32109.1| metalloprotease [Haemophilus parasuis SH0165] Length = 162 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 61/161 (37%), Positives = 86/161 (53%), Gaps = 8/161 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA EN + + + KA++ + E+++ D L Sbjct: 5 IDLQIASENTV---GLPTAAQFQHWVDKALAM---EAKTADYPETEITIRIVDEAESHEL 58 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP +G +LGD+++ +++E EA K E H HL Sbjct: 59 NLTYRGKDKPTNVLSFPFEV--PEGIQLPLLGDLIICRQVVEKEAVEQEKPLEAHWAHLA 116 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+ D++A ME LE I++ LG +DPY + Sbjct: 117 IHGTLHLLGYDHLTDEEAEEMESLETEIMQSLGFDDPYIAE 157 >gi|117927998|ref|YP_872549.1| putative metalloprotease [Acidothermus cellulolyticus 11B] gi|145558839|sp|A0LT03|RRMF_ACIC1 RecName: Full=Probable rRNA maturation factor gi|117648461|gb|ABK52563.1| protein of unknown function UPF0054 [Acidothermus cellulolyticus 11B] Length = 164 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 18/157 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ + DE+ L L V + + ELS++ D + L Sbjct: 1 MTVEIANESGVDVDELRLLDLARYVLDRM----------RIHPLAELSILLVDEGEMAVL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS--------DGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 + + PT+VLSFP +LGD+VL + + +A G Sbjct: 51 HERWMDEPGPTDVLSFPMDELRPGRLDVEIDPDAEPAVLGDVVLCPAVAKQQARHAGHST 110 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 ++ L L +HG LHLLGYDH ++ M L+ +L Sbjct: 111 QDELELLTVHGILHLLGYDHAEEDAEREMFALQSELL 147 >gi|111018251|ref|YP_701223.1| putative metalloprotease [Rhodococcus jostii RHA1] gi|123145313|sp|Q0SHC1|RRMF_RHOSR RecName: Full=Probable rRNA maturation factor gi|110817781|gb|ABG93065.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 180 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 16/156 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V A+ + ELS+V DS + L Sbjct: 1 MSIEVSNESGMDVSEEELISVARFVIARMDVH----------PAAELSMVLVDSATMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP MLGDIVL +A+ G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDSPEPGPSMLGDIVLCPSFASDQADKAGHPLAH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 L L +HG LHLLGYDH + ++ M GL+ +LE Sbjct: 111 ELALLTVHGVLHLLGYDHAEPEEEKEMFGLQNQLLE 146 >gi|56963443|ref|YP_175174.1| metal-dependent hydrolase [Bacillus clausii KSM-K16] gi|59799080|sp|Q5WHE2|RRMF_BACSK RecName: Full=Probable rRNA maturation factor gi|56909686|dbj|BAD64213.1| metal-dependent hydrolase [Bacillus clausii KSM-K16] Length = 160 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 16/163 (9%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D+++ E E L + V A + E+S+ FT I Sbjct: 1 MIDVELNDEGQFLSSEQ--LQLVKDVLNHAAQEVSLS------QQSEVSVTFTTEEDIHE 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLM--------LGDIVLAYEIIEIEANVLGKE 121 LN E+RGID+PT+VLSF +SD + LGDIV++ +E +A G Sbjct: 53 LNREHRGIDRPTDVLSFALNDETSDFDPTFHEELGLPNLLGDIVISVPHVERQAADYGHS 112 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 FE L L++HGFLHLLGYDH+++++ M + IL+ G+ Sbjct: 113 FERELAFLVVHGFLHLLGYDHMNEEEEKQMFTKQEEILQSYGL 155 >gi|264680424|ref|YP_003280334.1| metal-dependent hydrolase [Comamonas testosteroni CNB-2] gi|262210940|gb|ACY35038.1| putative metal-dependent hydrolase [Comamonas testosteroni CNB-2] Length = 152 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 7/116 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 E+++ D+ LN EYR D TNVL+F ++ D+VL ++E Sbjct: 41 DAEITVRIVDAEEGRKLNREYRKKDYATNVLTFDYQQE------PTVMADLVLCAPVVER 94 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPY 168 EA K E H HL++HG LH G+DH ++DA ME E I++++G DPY Sbjct: 95 EAQEQNKSLEEHYAHLLVHGTLHAQGWDHETSEEDAEEMEAYETDIMKEMGYEDPY 150 >gi|167855765|ref|ZP_02478519.1| hypothetical protein HPS_06120 [Haemophilus parasuis 29755] gi|167853105|gb|EDS24365.1| hypothetical protein HPS_06120 [Haemophilus parasuis 29755] Length = 162 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 61/161 (37%), Positives = 86/161 (53%), Gaps = 8/161 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA EN + + + KA++ + E+++ D L Sbjct: 5 IDLQIASENTV---GLPTAAQFQHWVDKALAM---EAKTADYPETEITIRIVDEAESHEL 58 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP +G +LGD+++ +++E EA K E H HL Sbjct: 59 NLTYRGKDKPTNVLSFPFEM--PEGIELPLLGDLIICRQVVEKEAVEQEKPLEAHWAHLA 116 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+ D++A ME LE I++ LG +DPY + Sbjct: 117 IHGTLHLLGYDHLTDEEAEEMESLETEIMQSLGFDDPYIAE 157 >gi|332678363|gb|AEE87492.1| predicted metal-dependent hydrolase [Francisella cf. novicida Fx1] Length = 162 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 12/160 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L++ ++ + + K + + K + + E++L + I+ + Sbjct: 4 LNINFINDDEH-------PIPSQDLLLKCLQLVADKHHI---SHAEVNLSIVSNDEIQQI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N ++R DKPTN++SF D ++ LGDIV+A ++E EA KE +H H Sbjct: 54 NKQFRNKDKPTNIISFEFEKPQGLPDDIANDFLGDIVIAPAVLENEAKEQNKELNDHWQH 113 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 + IHG LHLLGYDH DD++A VME LE +L LGI +PY Sbjct: 114 IFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGIANPY 153 >gi|157826441|ref|YP_001495505.1| putative metalloprotease [Rickettsia bellii OSU 85-389] gi|166229380|sp|A8GUH2|RRMF_RICB8 RecName: Full=Probable rRNA maturation factor gi|157801745|gb|ABV78468.1| hypothetical protein A1I_00310 [Rickettsia bellii OSU 85-389] Length = 183 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 56/182 (30%), Positives = 88/182 (48%), Gaps = 26/182 (14%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKE-NIVELSLVFTDSHRIE 68 ++++I + W + + + + + K +S+ E ELS++ T++ I Sbjct: 1 MINVEIIKNYSKWREH---KQINKALIKKITQKTLSQFDNFSEIKQFELSILLTNNEEIL 57 Query: 69 TLNFEYRGIDKPTNVLSFPTAF----------------------ASSDGCSSLMLGDIVL 106 TLN ++R I+K TNVLSFP + + LGDI Sbjct: 58 TLNKQFRNIEKATNVLSFPANELNWQDLRFSGNEIASSNKPIILENLGDSDYMHLGDIAF 117 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 Y++I E+ K FENH +HL+IH LHL+G+DH +D + +ME LE IL GI+ Sbjct: 118 CYDVIYNESYEQQKTFENHFIHLLIHSILHLIGFDHQNDTETKIMENLEIEILAHFGISS 177 Query: 167 PY 168 PY Sbjct: 178 PY 179 >gi|255659361|ref|ZP_05404770.1| putative metalloprotease [Mitsuokella multacida DSM 20544] gi|260848445|gb|EEX68452.1| putative metalloprotease [Mitsuokella multacida DSM 20544] Length = 154 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 9/157 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + + + N + +++ + A + G E+S+ T++ I LN Sbjct: 1 MNVIISN--YPEDLEVPQEYVANVTAAAQKV---GELYGVENGEVSITLTNNAYIHELNR 55 Query: 73 EYRGIDKPTNVLSFPTAFASSD----GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +YRGID+PT+VLSF + G +LGD+V++ E E +A G + + Sbjct: 56 QYRGIDRPTDVLSFALNESEEPEVTGGADINVLGDLVISVERAEEQAKDFGHSVKREMAF 115 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L +HG LHLLGYDH+++K+ ME +R ++E LGI Sbjct: 116 LTVHGMLHLLGYDHMEEKERLEMEQEQRFVMEKLGIP 152 >gi|291542198|emb|CBL15308.1| conserved hypothetical protein TIGR00043 [Ruminococcus bromii L2-63] Length = 171 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 8/158 (5%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +++ + N + + T ++ + + ++ F E E+S+ FTD+ I+ LN Sbjct: 6 KIRVIITNK--QKAVKIPTGIRMLVRRCCNAVLRLEKF--EGSAEISVTFTDNEGIKALN 61 Query: 72 FEYRGIDKPTNVLSFPTAFA----SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 +YR D T+VLSFP ++ + +LGD+V++ E +A + G + + Sbjct: 62 KQYRDKDIETDVLSFPMGENGVYDTNPETGAQILGDVVISMEKARDQAELFGHSLQREVG 121 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +L H LHLLGYDH++ + M E ++E LG+ Sbjct: 122 YLTAHSVLHLLGYDHMEKLERVRMREKEELVMEQLGLP 159 >gi|296137315|ref|YP_003644557.1| protein of unknown function UPF0054 [Thiomonas intermedia K12] gi|295797437|gb|ADG32227.1| protein of unknown function UPF0054 [Thiomonas intermedia K12] Length = 175 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 11/168 (6%) Query: 7 NLPRLDLQIAVENALWGDEIH---LRTLCEVVFAKAVSNLIS-KGYFVKENIVELSLVFT 62 P L L + + D++ L + +L + +++L F Sbjct: 8 TKPALRLSVQFADTTHRDQLPRALLLRWVRAALRVGLESLDALPQAGASPEAHQITLRFV 67 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 + LN YRG D TNVL+F + + DIVL ++ EA K Sbjct: 68 AADEGRALNRAYRGKDYATNVLTFDYS-------HWPVQADIVLCCPVVAGEALAQHKPL 120 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +H HL+IHG LH G+DH + +A ME E ++L+ GI+DPY Sbjct: 121 GSHYAHLVIHGLLHAQGWDHQTELEAQEMERHEVTVLQRFGISDPYAD 168 >gi|219670284|ref|YP_002460719.1| hypothetical protein Dhaf_4278 [Desulfitobacterium hafniense DCB-2] gi|254803892|sp|B8FUL3|RRMF_DESHD RecName: Full=Probable rRNA maturation factor gi|219540544|gb|ACL22283.1| protein of unknown function UPF0054 [Desulfitobacterium hafniense DCB-2] Length = 157 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 55/159 (34%), Positives = 80/159 (50%), Gaps = 11/159 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LD+ ++ + L L E AKAV + E+SL D RI L Sbjct: 3 LDINWEEDSIPENERGSLTGLLEQGIAKAV------HLSAESEEAEVSLTLVDDARIHEL 56 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLML-----GDIVLAYEIIEIEANVLGKEFENH 125 N +YRG+D+PT+VLSF SD L GDI+++ E +A G FE Sbjct: 57 NRDYRGVDRPTDVLSFALQEERSDEPDILDYEDHLLGDIIISVERARAQAIDYGHSFERE 116 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LV+L +HG LHLLGYDH++++D M E +++ +G+ Sbjct: 117 LVYLAVHGTLHLLGYDHMEEEDKEEMRRQEEAVMSQIGL 155 >gi|146310843|ref|YP_001175917.1| putative metalloprotease [Enterobacter sp. 638] gi|166977725|sp|A4W836|RRMF_ENT38 RecName: Full=Probable rRNA maturation factor gi|145317719|gb|ABP59866.1| protein of unknown function UPF0054 [Enterobacter sp. 638] Length = 155 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 89/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E+ E E F K + +I + + E+++ D Sbjct: 1 MSQVILDLQLACEDNSGLPE-------ESQFQKWLDAVIPQF----QEESEVTIRVVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA K + H Sbjct: 50 ESHELNLTYRGKDKPTNVLSFPFE--APPGIELPLLGDLIICRQVVEQEAKEQQKPLDAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH++D++A ME LE I+ LG DPY + Sbjct: 108 WAHMVIHGSLHLLGYDHIEDEEAEEMESLETEIMLALGYEDPYIAE 153 >gi|116670778|ref|YP_831711.1| putative metalloprotease [Arthrobacter sp. FB24] gi|145572771|sp|A0JX41|RRMF_ARTS2 RecName: Full=Probable rRNA maturation factor gi|116610887|gb|ABK03611.1| protein of unknown function UPF0054 [Arthrobacter sp. FB24] Length = 157 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 14/156 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + DE L L VF + ELS++ D +E L Sbjct: 1 MSIEVNNESGVTVDEAQLVALARFVFER----------LYIHPQAELSILLVDEPAMEKL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFA----SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + E T+VLS P MLGDI + ++ E++A G ++ + Sbjct: 51 HLELMDEPGATDVLSVPMDELTPGTPDKPTPQGMLGDIAVCPQVAEVQARNAGHSTQDEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L HG LHLLGYDH D ++ M GL+R +LE Sbjct: 111 LLLTTHGILHLLGYDHADPEEKEEMFGLQRELLEGF 146 >gi|257055401|ref|YP_003133233.1| putative metalloprotease [Saccharomonospora viridis DSM 43017] gi|256585273|gb|ACU96406.1| conserved hypothetical protein TIGR00043 [Saccharomonospora viridis DSM 43017] Length = 183 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ + DE + + + + ELS+V +E L Sbjct: 1 MSIEIANESGIDVDEASIVSAARFALDRM----------EVSPLAELSIVLVTLDVMEDL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V++FP + S +LGDIVL + +A G + Sbjct: 51 HERWMDLPGPTDVMAFPMDELEVGRRPDAAEPSPALLGDIVLCPAFAKDQARKAGHSLLD 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + ++ M L+ IL D Sbjct: 111 ELHLLTVHGVLHLLGYDHAEPEEEREMFALQNRILADF 148 >gi|118467556|ref|YP_888768.1| metalloprotease [Mycobacterium smegmatis str. MC2 155] gi|166227261|sp|A0R0T0|RRMF_MYCS2 RecName: Full=Probable rRNA maturation factor gi|118168843|gb|ABK69739.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length = 178 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ E L ++ V K + ELS+V DS + L Sbjct: 1 MSIEVSNESGYDVSEPELISVARFVIEKMDVH----------PAAELSMVLLDSAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP MLGDIVL E E +A G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPAMLGDIVLCPEFAEQQAAKAGHSLGH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L L +HG LHLLGYDH + + M L+R +LE+ Sbjct: 111 ELALLTVHGVLHLLGYDHAEPDEEKEMFALQRQLLEE 147 >gi|53804491|ref|YP_113914.1| hypothetical protein MCA1457 [Methylococcus capsulatus str. Bath] gi|59799087|sp|Q608N3|RRMF_METCA RecName: Full=Probable rRNA maturation factor gi|53758252|gb|AAU92543.1| conserved hypothetical protein TIGR00043 [Methylococcus capsulatus str. Bath] Length = 150 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 2/126 (1%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGD 103 + +++ E+ + D LN YRG PTNVLSFP F +G + +LGD Sbjct: 22 LWAEAALEKPHAEVVIRIVDREESAALNSTYRGKTGPTNVLSFP--FVVPEGVPNDLLGD 79 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +V+ ++E EA GK E H H+++HG LHL GYDH+++ +A +ME E +IL LG Sbjct: 80 LVICAPVVEREAAEQGKPVEAHWAHMVVHGMLHLQGYDHIEEAEAEIMENREIAILRGLG 139 Query: 164 INDPYE 169 + +PY Sbjct: 140 MENPYR 145 >gi|167010863|ref|ZP_02275794.1| hypothetical protein Ftulh_09158 [Francisella tularensis subsp. holarctica FSC200] gi|254369232|ref|ZP_04985244.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] gi|145558840|sp|Q2A3U8|RRMF_FRATH RecName: Full=Probable rRNA maturation factor gi|157122182|gb|EDO66322.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] Length = 168 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 12/168 (7%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 +K+ + L++ ++ + + K + + K + + E++L Sbjct: 2 KRKLKMDNLNINFINDDEH-------PIPSQDLLLKCLQLVADKHHI---SHAEVNLNIV 51 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGK 120 + I+ +N ++R DKPTN++SF D ++ LGDIV+A ++E EA K Sbjct: 52 SNDEIQQINKQFRNKDKPTNIISFEFEKPQGLPDDIANDFLGDIVIAPAVLENEAKEQNK 111 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E +H H+ IHG LHLLGYDH DD++A VME LE +L LGI +PY Sbjct: 112 EINDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGIANPY 159 >gi|89895855|ref|YP_519342.1| hypothetical protein DSY3109 [Desulfitobacterium hafniense Y51] gi|122481904|sp|Q24SU4|RRMF_DESHY RecName: Full=Probable rRNA maturation factor gi|89335303|dbj|BAE84898.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 157 Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 55/159 (34%), Positives = 79/159 (49%), Gaps = 11/159 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LD+ ++ + L L E AKAV + E+SL D RI L Sbjct: 3 LDINWEEDSIPENERGSLTGLLEQGIAKAV------HLSAESEEAEVSLTLVDDARIHEL 56 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLML-----GDIVLAYEIIEIEANVLGKEFENH 125 N +YRG+D+PT+VLSF SD L GDI+++ E +A G FE Sbjct: 57 NRDYRGVDRPTDVLSFALQEERSDEPDILDYEDHLLGDIIISVERARAQAIDYGHSFERE 116 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LV+L +HG LHLLGYDH+++ D M E +++ +G+ Sbjct: 117 LVYLAVHGTLHLLGYDHMEEADKEKMRRQEEAVMSQIGL 155 >gi|159039362|ref|YP_001538615.1| putative metalloprotease [Salinispora arenicola CNS-205] gi|157918197|gb|ABV99624.1| protein of unknown function UPF0054 [Salinispora arenicola CNS-205] Length = 170 Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 19/159 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L ++IA E+ + D + + + + ELS++ D + L Sbjct: 14 LSIEIANESGVDIDTDAVLAVARHALDEM----------GVNQLAELSVLLVDIDYMAEL 63 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGDIVLAYEIIEIEANVLGKE 121 N + G D PT+VL+FP S D G +LGDIVL E+ +A G Sbjct: 64 NHRWMGGDGPTDVLAFPMDEGSVDHGPGESAVAGTEPALLGDIVLCPEVAAKQAATAGHS 123 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + L L +HG LHLLGYDH + + M L+ +L Sbjct: 124 AADELHLLTVHGVLHLLGYDHAEPDEEREMFALQARLLA 162 >gi|331001260|ref|ZP_08324886.1| translation metalloprotein YbeY [Parasutterella excrementihominis YIT 11859] gi|329568987|gb|EGG50783.1| translation metalloprotein YbeY [Parasutterella excrementihominis YIT 11859] Length = 156 Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 17/158 (10%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L ++V+N ++ R+ + ++A+ EN ++++ F + LN Sbjct: 7 LSLSVQNLAHFPQLPSRSKIQRWISRAL-----------ENDAQITVRFVEEEEGRELNK 55 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 YR D TNVL+F ++ D+V+ ++E E+ K E H+ HL++H Sbjct: 56 TYRSKDYATNVLTFDYQ------IEPVVEADLVICVPVLEKESKDQNKTLEEHMAHLLVH 109 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 G LH GYDH+DD++A VME E +L DLG + PY Sbjct: 110 GTLHAQGYDHMDDEEAEVMEQRETDVLVDLGFDVPYPD 147 >gi|226307220|ref|YP_002767180.1| hypothetical protein RER_37330 [Rhodococcus erythropolis PR4] gi|229493192|ref|ZP_04386984.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|259647013|sp|C1A1F6|RRMF_RHOE4 RecName: Full=Probable rRNA maturation factor gi|226186337|dbj|BAH34441.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] gi|229319923|gb|EEN85752.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length = 180 Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V A+ + ELS+V DS + L Sbjct: 1 MSIEVSNESGMDISEPELISVARFVIARMDVH----------PAAELSMVLVDSATMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP MLGDIVL +A+ G + Sbjct: 51 HVRWMDLPGPTDVMSFPMDELEPGGRPDSPEPGPSMLGDIVLCPSFAADQADKAGHSLAH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L L +HG LHLLGYDH + ++ M GL+ S+LE+ Sbjct: 111 ELALLTVHGVLHLLGYDHAEPEEEKEMFGLQNSLLEE 147 >gi|134300321|ref|YP_001113817.1| putative metalloprotease [Desulfotomaculum reducens MI-1] gi|189039698|sp|A4J7D9|RRMF_DESRM RecName: Full=Probable rRNA maturation factor gi|134053021|gb|ABO50992.1| protein of unknown function UPF0054 [Desulfotomaculum reducens MI-1] Length = 153 Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 52/149 (34%), Positives = 72/149 (48%), Gaps = 5/149 (3%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 +EI + + V + + + E+ L+F D + I +LN EYRGIDK Sbjct: 6 NNLQEEISVEENLLKLVESVVKVSLESEGYSPD--AEVGLIFVDDNYIRSLNAEYRGIDK 63 Query: 80 PTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 T+VLSF LGDIV++ + +A G F + +L HG LH Sbjct: 64 ATDVLSFALNEGEEMPEEEEAEDLLGDIVISLPTAQRQAAEYGHSFNREVAYLTAHGSLH 123 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGIN 165 LLGYDH+ ++D VM E ILE LGIN Sbjct: 124 LLGYDHMTEEDRQVMRQKEEGILERLGIN 152 >gi|134098070|ref|YP_001103731.1| putative metalloprotease [Saccharopolyspora erythraea NRRL 2338] gi|291007471|ref|ZP_06565444.1| putative metalloprotease [Saccharopolyspora erythraea NRRL 2338] gi|166231386|sp|A4F9T1|RRMF_SACEN RecName: Full=Probable rRNA maturation factor gi|133910693|emb|CAM00806.1| protein of unknown function UPF0054 [Saccharopolyspora erythraea NRRL 2338] Length = 183 Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ + E + ++ K + ELS+V + + L Sbjct: 1 MSIEIANESGVEVPEPSIVSVARFALDKM----------SVSQLAELSIVLVELDVMSDL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V++FP S G +LGDIVL + +A G + Sbjct: 51 HERWMDLPGPTDVMAFPMDEYDSSRRPDSAGAGPALLGDIVLCPAFAKDQARKAGHSLLD 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + ++ M GL+ IL D Sbjct: 111 ELHLLTVHGVLHLLGYDHAEPEEEREMFGLQNQILADF 148 >gi|313114170|ref|ZP_07799722.1| conserved hypothetical protein TIGR00043 [Faecalibacterium cf. prausnitzii KLE1255] gi|310623579|gb|EFQ06982.1| conserved hypothetical protein TIGR00043 [Faecalibacterium cf. prausnitzii KLE1255] Length = 163 Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 7/148 (4%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 + + + ++ +A + ++ +F E E+S+ F D+ I LN +YR PT+ Sbjct: 11 QKAVKVPSGLRILIRRACNAVLEYEHF--EAPAEISVTFVDNAAIAELNNQYRNKPMPTD 68 Query: 83 VLSFPT----AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 VLSFP + + MLGDIV++ E + +AN+ G + + L +H LHLL Sbjct: 69 VLSFPLGVNGKYDVDENNGCKMLGDIVISMERAQEQANLYGHPLQREVAFLTVHSMLHLL 128 Query: 139 GYDHVDDK-DACVMEGLERSILEDLGIN 165 GYDH + +A M E ++L LG+ Sbjct: 129 GYDHENGGLEAMRMREKEEAVLLQLGLP 156 >gi|158421634|ref|YP_001522926.1| hypothetical protein AZC_0010 [Azorhizobium caulinodans ORS 571] gi|172048013|sp|A8IG05|RRMF_AZOC5 RecName: Full=Probable rRNA maturation factor gi|158328523|dbj|BAF86008.1| protein of unknown function [Azorhizobium caulinodans ORS 571] Length = 159 Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 87/158 (55%), Gaps = 5/158 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ + VE+ W + A+++L + E+S+ TD RI L Sbjct: 1 MEIDVLVEDDGWSALPDAAEIAIAAARAALASLGDEV----PEGAEMSITLTDDARIRVL 56 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+R DKPTNVLSFP A +G LGD+++A E + EA K +HL HL+ Sbjct: 57 NREWRDKDKPTNVLSFPAAEL-PEGVVPQPLGDVIVARETVFSEALAEDKTPAHHLAHLV 115 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHL+G+DH DD +A ME ER IL LGI+DPY Sbjct: 116 VHGTLHLMGFDHEDDDEAEEMEAAERQILAGLGIDDPY 153 >gi|51891669|ref|YP_074360.1| hypothetical protein STH531 [Symbiobacterium thermophilum IAM 14863] gi|59799024|sp|Q67S27|RRMF_SYMTH RecName: Full=Probable rRNA maturation factor gi|51855358|dbj|BAD39516.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 156 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 6/157 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I V N + + E + + + + V +S+ D I LN Sbjct: 1 MEIWVNND--QEIVEFTEEHEELIRRVAERALELAGAGLGSNVSVSVTLVDDETITDLNR 58 Query: 73 EYRGIDKPTNVLSFPT----AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 ++RG+ PT+VLSF + LGDIV++ E +A G FE L Sbjct: 59 DHRGLASPTDVLSFSQLEGEDMGDLPEGEPMPLGDIVISLERCVSQAAEYGHSFERELGF 118 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L HG LHL+G+DH +D M IL LG++ Sbjct: 119 LTAHGMLHLMGWDHQTPEDEARMMAKTEEILAGLGLS 155 >gi|118497656|ref|YP_898706.1| hypothetical protein FTN_1065 [Francisella tularensis subsp. novicida U112] gi|194323628|ref|ZP_03057404.1| conserved hypothetical protein, putative [Francisella tularensis subsp. novicida FTE] gi|208779717|ref|ZP_03247061.1| conserved hypothetical protein [Francisella novicida FTG] gi|145572751|sp|A0Q6T7|RRMF_FRATN RecName: Full=Probable rRNA maturation factor gi|118423562|gb|ABK89952.1| conserved protein of unknown function [Francisella novicida U112] gi|194321992|gb|EDX19474.1| conserved hypothetical protein, putative [Francisella tularensis subsp. novicida FTE] gi|208744172|gb|EDZ90472.1| conserved hypothetical protein [Francisella novicida FTG] Length = 162 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 12/160 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L++ + ++ + + K + + K + + E++L + I+ + Sbjct: 4 LNINLINDDEH-------PIPSQDLLLKCLQLVADKHHI---SHAEVNLNIVSNDEIQQI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N ++R DKPTN++SF D ++ LGDIV+A ++E EA KE +H H Sbjct: 54 NKQFRNKDKPTNIISFEFEKPQGLPDDIANDFLGDIVIAPAVLENEAKEQNKELNDHWQH 113 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 + IHG LHLLGYDH DD++A VME LE +L LGI +PY Sbjct: 114 IFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGIANPY 153 >gi|332993748|gb|AEF03803.1| hypothetical protein ambt_11410 [Alteromonas sp. SN2] Length = 155 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 58/146 (39%), Positives = 74/146 (50%), Gaps = 9/146 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 I E + E+++ FTD +TLN EYRG DKPTNV Sbjct: 19 KAIPSLEQIEAWANAVLVA-------ENTGEQEITVRFTDDEESQTLNHEYRGKDKPTNV 71 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 LSFP G +LGD+V+ +I EA K NH H+++HG LHLLGYDH+ Sbjct: 72 LSFPFEV--PPGIEMNLLGDLVICVPVIMREAEEQDKTPTNHYAHMVVHGILHLLGYDHI 129 Query: 144 DDKDACVMEGLERSILEDLGINDPYE 169 DD DA +ME E IL L I +PY+ Sbjct: 130 DDADADIMEAKEIRILASLNIGNPYQ 155 >gi|303256204|ref|ZP_07342220.1| putative metalloprotease [Burkholderiales bacterium 1_1_47] gi|302860933|gb|EFL84008.1| putative metalloprotease [Burkholderiales bacterium 1_1_47] Length = 156 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 17/158 (10%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L ++V+N ++ R + ++A+ EN ++++ F + LN Sbjct: 7 LSLSVQNLAHFPQLPSRGKIQRWISRAL-----------ENDAQITVRFVEEEEGRELNK 55 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 YR D TNVL+F ++ D+V+ ++E E+ K E H+ HL++H Sbjct: 56 TYRSKDYATNVLTFDYQ------IEPVVEADLVICVPVLEKESKDQNKTLEEHMAHLLVH 109 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 G LH GYDH+DD++A VME E +L DLG + PY Sbjct: 110 GTLHAQGYDHMDDEEAEVMEQRETDVLVDLGFDVPYPD 147 >gi|224456812|ref|ZP_03665285.1| hypothetical protein FtultM_03352 [Francisella tularensis subsp. tularensis MA00-2987] gi|282158912|gb|ADA78303.1| hypothetical protein NE061598_03525 [Francisella tularensis subsp. tularensis NE061598] Length = 162 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 55/160 (34%), Positives = 81/160 (50%), Gaps = 12/160 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L++ ++ L C + A + E++L + I+ + Sbjct: 4 LNINFINDDEHPIPSQDLLLKCLQLVANK----------HHISHAEVNLNIVSNDEIQQI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N ++R DKPTN++SF D ++ LGDIV+A ++E EA KE +H H Sbjct: 54 NKQFRNKDKPTNIISFEFEKPQGLPDDIANDFLGDIVIAPAVLENEAKEQNKELNDHWQH 113 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 + IHG LHLLGYDH DD++A VME LE +L LGI +PY Sbjct: 114 IFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGIANPY 153 >gi|225018653|ref|ZP_03707845.1| hypothetical protein CLOSTMETH_02603 [Clostridium methylpentosum DSM 5476] gi|224948561|gb|EEG29770.1| hypothetical protein CLOSTMETH_02603 [Clostridium methylpentosum DSM 5476] Length = 168 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 9/161 (5%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +++ + N + + + + ++ + +++ F ++ E+S+ F D+ I+ Sbjct: 1 MQKIKVLISNK--QNVVKIPSGIRLLVRRCCHAVLNHEGFSQD--AEVSVSFVDNADIQK 56 Query: 70 LNFEYRGIDKPTNVLSFPT----AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN EYR D PT+VLSFP F ++ + +LGDIVL+ E +A + G + Sbjct: 57 LNSEYRQKDAPTDVLSFPLGENGEFDLNEETGAAVLGDIVLSMEKAYEQAEIYGHSLQRE 116 Query: 126 LVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGIN 165 + +L +H HLLGYDH +A M E ++L LG+ Sbjct: 117 VAYLTVHSMFHLLGYDHEQGGLEAVRMREKEEAVLTSLGLP 157 >gi|297559685|ref|YP_003678659.1| hypothetical protein Ndas_0708 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844133|gb|ADH66153.1| protein of unknown function UPF0054 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 162 Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 15/155 (9%) Query: 11 LDLQIAVENA-LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + +A E+ DE L L V + + ELS+V D + Sbjct: 1 MSIDVANESGVTTVDEERLSRLARHVLDAMRVH----------PLAELSVVLVDEEPMAD 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGC----SSLMLGDIVLAYEIIEIEANVLGKEFENH 125 L+ + PT+VLSFP G +LGD+++ ++ E +A G E Sbjct: 51 LHVRWMDEPGPTDVLSFPMDELRPGGPGRTSEPGVLGDVIICPQVAERQAEKAGHGTEAE 110 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + L HG LHLLGYDH + ++ M GL+ IL Sbjct: 111 IDLLCTHGILHLLGYDHAEPEEHKEMFGLQGEILA 145 >gi|15613926|ref|NP_242229.1| hypothetical protein BH1363 [Bacillus halodurans C-125] gi|20140844|sp|Q9KD56|RRMF_BACHD RecName: Full=Probable rRNA maturation factor gi|10173979|dbj|BAB05082.1| BH1363 [Bacillus halodurans C-125] Length = 159 Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats. Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 12/161 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++QI + D T + + + + ++ + E ELSL F I+ L Sbjct: 1 MNIQIDM-----IDHTDTLTEKQETLIRELLHEAARYEKLAEGTYELSLSFVSDEEIQEL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFA-------SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 N +YRG D+PT+V+SF + + +LGDI+++ + +A G FE Sbjct: 56 NRDYRGKDQPTDVISFALNEVGEGEQPVEPEAGTPNLLGDIIVSIPRCQEQAEAYGHSFE 115 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L LI+HGFLHLLGYDH+ + + M + IL G+ Sbjct: 116 RELAFLIVHGFLHLLGYDHMSEDEEKKMFMRQEDILTAYGL 156 >gi|332670852|ref|YP_004453860.1| hypothetical protein Celf_2346 [Cellulomonas fimi ATCC 484] gi|332339890|gb|AEE46473.1| protein of unknown function UPF0054 [Cellulomonas fimi ATCC 484] Length = 150 Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ DE L V ELS++ + + L Sbjct: 1 MSIEVNNESGHDVDEAEFAALARFVLDAM----------HVHPQTELSIMLVGTDVMTDL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM----LGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ PT+VLSFP LGD+VL E+ +A G L Sbjct: 51 HVKWMDEPGPTDVLSFPMDELRPGREGEPTPAGLLGDVVLCPEVAAQQARAAGHSTAEEL 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L HG LHLLGYDHV+ ++ M L+R +L Sbjct: 111 LLLTTHGILHLLGYDHVEPEEEKEMFALQRRLL 143 >gi|220909854|ref|YP_002485165.1| hypothetical protein Cyan7425_4494 [Cyanothece sp. PCC 7425] gi|254803919|sp|B8HK54|RRMF_CYAP4 RecName: Full=Probable rRNA maturation factor gi|219866465|gb|ACL46804.1| protein of unknown function UPF0054 [Cyanothece sp. PCC 7425] Length = 169 Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 10/165 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVV---FAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + + + +++A + E F + L EL L TD I Sbjct: 1 MQVDVDLQDAYSSSTAQVPIAAETWLTWFNRWFELLHPS--LPPACSYELCLRLTDDGEI 58 Query: 68 ETLNFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 +LN YR +PT+VL+F + D L LGDIV++ + + ++ Sbjct: 59 ASLNSFYRQQPQPTDVLAFAALEVEVPRSPPDQTELLHLGDIVISVDTAQRQSLAGQHSL 118 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 L L HGFLHLLG+DH D M + +L +G+ +P Sbjct: 119 TVELAWLAAHGFLHLLGWDHPDPASLEQMLKQQSILLAAVGLENP 163 >gi|220932095|ref|YP_002509003.1| conserved hypothetical protein TIGR00043 [Halothermothrix orenii H 168] gi|219993405|gb|ACL70008.1| conserved hypothetical protein TIGR00043 [Halothermothrix orenii H 168] Length = 142 Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 16/153 (10%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + ++I + G ++ L E V K V++ +S+ D+ I Sbjct: 1 MVKVEINDNQGITGSNNDIKQLIETVINKTAE--------VEKASGTVSVALVDNKTIAE 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YR ++ PT+VLSFP +LGDI+++ + +A+ G E L L Sbjct: 53 LNSKYRNVEGPTDVLSFPMDED--------ILGDIIISIDRARQQADEYGHSLERELGFL 104 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +HG LHLLGY+H D++ CVM E +L++L Sbjct: 105 TVHGMLHLLGYNHKTDEEKCVMRQKEERVLKEL 137 >gi|91206125|ref|YP_538480.1| putative metalloprotease [Rickettsia bellii RML369-C] gi|122425195|sp|Q1RGX3|RRMF_RICBR RecName: Full=Probable rRNA maturation factor gi|91069669|gb|ABE05391.1| Putative metal-dependent hydrolase [Rickettsia bellii RML369-C] Length = 183 Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 26/182 (14%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKE-NIVELSLVFTDSHRIE 68 ++++I + W + + + + + K +S+ E ELS++ T++ I Sbjct: 1 MINVEIIKNYSKWREH---KQINKALIKKITQKTLSQFDNFSEIKQFELSILLTNNEEIL 57 Query: 69 TLNFEYRGIDKPTNVLSFPTAF----------------------ASSDGCSSLMLGDIVL 106 TLN ++R I+K TNVLSFP + + LGDI Sbjct: 58 TLNKQFRNIEKATNVLSFPANELNWQDLRFSGNEIASSNKPIILENLGDSDYMHLGDIAF 117 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 +++I E+ K FENH +HL+IH LHL+G+DH +D + +ME LE IL GI+ Sbjct: 118 CHDVIYNESYEQQKTFENHFIHLLIHSILHLIGFDHQNDTETKIMENLEIEILAHFGISS 177 Query: 167 PY 168 PY Sbjct: 178 PY 179 >gi|34499607|ref|NP_903822.1| hypothetical protein CV_4152 [Chromobacterium violaceum ATCC 12472] gi|46577368|sp|Q7NQI5|RRMF_CHRVO RecName: Full=Probable rRNA maturation factor gi|34105458|gb|AAQ61813.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 168 Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats. Identities = 56/179 (31%), Positives = 77/179 (43%), Gaps = 21/179 (11%) Query: 1 MSVKKVN--------LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKE 52 M K N L L + + A +R C+ + V Sbjct: 1 MKKAKRNPLLARLAGRLELTLDVRSDAAALPPPALIRRACQAALRRDV------------ 48 Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 ++S+V D+ LN +YRG D TNVLSF L GD+VL ++E Sbjct: 49 KQAQISIVIVDAAEGRQLNNDYRGKDYATNVLSFALNEGEPVEGLPLF-GDLVLCAPVVE 107 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA K H HL++HG LHL G+DH +D +A ME LE I++ LG DPY + Sbjct: 108 QEAAEQNKALMAHYAHLLVHGMLHLQGFDHEEDAEAEAMEVLETVIVKQLGYPDPYHEE 166 >gi|299533016|ref|ZP_07046403.1| putative metal-dependent hydrolase [Comamonas testosteroni S44] gi|298719240|gb|EFI60210.1| putative metal-dependent hydrolase [Comamonas testosteroni S44] Length = 152 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 7/116 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 E+++ D+ LN EYR D TNVL+F ++ D+VL ++E Sbjct: 41 DAEITVRIVDTEEGRKLNREYRKKDYATNVLTFDY------HQEPTVMADLVLCAPVVER 94 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPY 168 EA K E H HL++HG LH G+DH ++DA ME E I++++G DPY Sbjct: 95 EAQEQNKSLEEHYAHLLVHGTLHAQGWDHETSEEDAEEMEAYETDIMKEMGYEDPY 150 >gi|269958362|ref|YP_003328149.1| hypothetical protein ACIS_00135 [Anaplasma centrale str. Israel] gi|269848191|gb|ACZ48835.1| hypothetical protein ACIS_00135 [Anaplasma centrale str. Israel] Length = 154 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 8/156 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 +++ + W + AK V L + + ++ +V + + LN Sbjct: 2 IEVNIHTRGWYKLVGKPKTS----AKRVIGLCLSELDITKYDPKVFVVLANDALLLELNS 57 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +YRGI K TNVLSF S LG+I L+ E I E+ + +H H++IH Sbjct: 58 QYRGIHKATNVLSFSYEKLSPGC----CLGEIYLSMERIAEESLEMDVAVRSHFFHMLIH 113 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 G LH+LGYDH + ++A M+ LE +L LGI +PY Sbjct: 114 GMLHILGYDHEEPEEATTMQALEVGLLAKLGIRNPY 149 >gi|219847946|ref|YP_002462379.1| hypothetical protein Cagg_1028 [Chloroflexus aggregans DSM 9485] gi|254799905|sp|B8G6K6|RRMF_CHLAD RecName: Full=Probable rRNA maturation factor gi|219542205|gb|ACL23943.1| protein of unknown function UPF0054 [Chloroflexus aggregans DSM 9485] Length = 153 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 15/159 (9%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +++ V++ L D + + V E+ + T + LN Sbjct: 4 TVEVLVDDDLAVDAALVERAAQAVLTA----------EQVPAGCEVCIRITTDAELHRLN 53 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCS----SLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 ++RG+D PT+VLSF SS + LGDI ++Y+ + ++A G L Sbjct: 54 RDFRGVDAPTDVLSFADDGNSSQFVTAPNLPRYLGDIAISYDRVLVQAAEYGHSPARELA 113 Query: 128 HLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGIN 165 +L +HG LHLLGYDH D +M E +++ LG+ Sbjct: 114 YLTVHGMLHLLGYDHERGPADEALMRAREEAVMTALGLP 152 >gi|317128316|ref|YP_004094598.1| hypothetical protein Bcell_1604 [Bacillus cellulosilyticus DSM 2522] gi|315473264|gb|ADU29867.1| protein of unknown function UPF0054 [Bacillus cellulosilyticus DSM 2522] Length = 156 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 4/122 (3%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS----SLMLGD 103 Y E+S+ F + +I+ LN EYR D+PT+VLSF + +LGD Sbjct: 34 YEGVSKDAEVSITFVEDDKIQELNREYRDKDQPTDVLSFALNEGDQQPITGEGLPELLGD 93 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 I+++ + +A G F L L +HGFLHLLGYDH +++ M + ILE G Sbjct: 94 IIISVPRAKQQAEEYGHGFNRELCFLAVHGFLHLLGYDHNTEEEEREMFKKQEEILEKYG 153 Query: 164 IN 165 + Sbjct: 154 LK 155 >gi|269794667|ref|YP_003314122.1| hypothetical protein Sked_13480 [Sanguibacter keddieii DSM 10542] gi|269096852|gb|ACZ21288.1| conserved hypothetical protein TIGR00043 [Sanguibacter keddieii DSM 10542] Length = 153 Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ DE L V + + ELS++F + + L Sbjct: 1 MSIEVNNESGYEVDEAEFAALGRFVLDEM----------HVHSQTELSILFVGTEVMSEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM----LGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ PT+VLSFP + LGD+V+ E+ I+A G + Sbjct: 51 HVQWMDEPGPTDVLSFPMDELRPGREGEVTPAGLLGDVVVCPEVAAIQAQGAGHSTVEEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L HG LHLLGYDH + ++ M GL+R +L Sbjct: 111 LLLTTHGILHLLGYDHAEPEEEKEMFGLQRRLL 143 >gi|160945168|ref|ZP_02092394.1| hypothetical protein FAEPRAM212_02687 [Faecalibacterium prausnitzii M21/2] gi|158442899|gb|EDP19904.1| hypothetical protein FAEPRAM212_02687 [Faecalibacterium prausnitzii M21/2] gi|295105595|emb|CBL03139.1| conserved hypothetical protein TIGR00043 [Faecalibacterium prausnitzii SL3/3] Length = 163 Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 7/148 (4%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 + + + ++ +A + ++ +F + E+S+ F D+ I LN +YR PT+ Sbjct: 11 QKAVKVPSGLRILIRRACNAVLEYEHF--DRPAEISVTFVDNAAIAELNNQYRNKPMPTD 68 Query: 83 VLSFPTAFA----SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 VLSFP + +MLGDIV++ E +AN+ G + + L +H LHLL Sbjct: 69 VLSFPLGENGKYDIDENNGCMMLGDIVISMERAMEQANLYGHPLQREVAFLTVHSMLHLL 128 Query: 139 GYDHVDDK-DACVMEGLERSILEDLGIN 165 GYDH + +A M E ++L LG+ Sbjct: 129 GYDHENGGLEAMRMREKEEAVLLQLGLP 156 >gi|22299128|ref|NP_682375.1| putative metalloprotease [Thermosynechococcus elongatus BP-1] gi|29428189|sp|Q8DIK0|RRMF_THEEB RecName: Full=Probable rRNA maturation factor gi|22295310|dbj|BAC09137.1| tlr1585 [Thermosynechococcus elongatus BP-1] Length = 160 Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 9/161 (5%) Query: 11 LDLQIAVE--NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 + + + +E + E+ E F ++ + + EL+L T I+ Sbjct: 1 MTVTVYLEVHDPALPAEVTALPW-ERWFRTWMAMVEPTQG----KVYELTLRLTTDAAIQ 55 Query: 69 TLNFEYRGIDKPTNVLSFPTAF--ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 LN +YR D PT+VL+F T LGDI+++ + +A G + Sbjct: 56 ALNQQYRDRDTPTDVLAFATRDGALPLPLGEPEYLGDIIISGDTARRQAAESGHTLSIEI 115 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 L HG LHLLG+DH D+ + M + LE +G+ P Sbjct: 116 AWLACHGLLHLLGWDHPDEAELARMLTQQAQCLEAVGLTPP 156 >gi|187931464|ref|YP_001891448.1| hypothetical protein FTM_0691 [Francisella tularensis subsp. mediasiatica FSC147] gi|238691552|sp|B2SG11|RRMF_FRATM RecName: Full=Probable rRNA maturation factor gi|187712373|gb|ACD30670.1| conserved hypothetical protein, putative [Francisella tularensis subsp. mediasiatica FSC147] Length = 162 Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats. Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 12/160 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L++ ++ + + K + + K + + E++L + I+ + Sbjct: 4 LNINFINDDEH-------PIPSQDLLLKCLQLVADKHHI---SHAEVNLNIVSNDEIQQI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N ++R DKPTN++SF D ++ LGDIV+A ++E EA KE +H H Sbjct: 54 NKQFRNKDKPTNIISFEFEKPQGLPDDIANDFLGDIVIAPAVLENEAKEQNKELNDHWQH 113 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 + IHG LHLLGYDH D++A VME LE +L LGI +PY Sbjct: 114 IFIHGLLHLLGYDHQGDQEAEVMENLEIQLLAQLGIANPY 153 >gi|89256242|ref|YP_513604.1| hypothetical protein FTL_0884 [Francisella tularensis subsp. holarctica LVS] gi|89144073|emb|CAJ79323.1| cconserved hypothetical protein, UPF0054 family [Francisella tularensis subsp. holarctica LVS] Length = 173 Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 12/168 (7%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 +K+ + L++ ++ + + K + + K + + E++L Sbjct: 7 KRKLKMDNLNINFINDDEH-------PIPSQDLLLKCLQLVADKHHI---SHAEVNLNIV 56 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGK 120 + I+ +N ++R DKPTN++SF D ++ LGDIV+A ++E EA K Sbjct: 57 SNDEIQQINKQFRNKDKPTNIISFEFEKPQGLPDDIANDFLGDIVIAPAVLENEAKEQNK 116 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E +H H+ IHG LHLLGYDH DD++A VME LE +L LGI +PY Sbjct: 117 EINDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGIANPY 164 >gi|118618894|ref|YP_907226.1| putative metalloprotease [Mycobacterium ulcerans Agy99] gi|183983657|ref|YP_001851948.1| metal-dependent hydrolase [Mycobacterium marinum M] gi|145558814|sp|A0PTT6|RRMF_MYCUA RecName: Full=Probable rRNA maturation factor gi|238690927|sp|B2HLB7|RRMF_MYCMM RecName: Full=Probable rRNA maturation factor gi|118571004|gb|ABL05755.1| conserved hypothetical metal-dependent hydrolase [Mycobacterium ulcerans Agy99] gi|183176983|gb|ACC42093.1| conserved hypothetical metal-dependent hydrolase [Mycobacterium marinum M] Length = 178 Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V K ELS+V D+ + L Sbjct: 1 MSIEVSNESGIDVSETELVSVARFVIGKM----------DVNPGAELSMVLLDTAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP MLGDIVL E +A G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPAMLGDIVLCPEFAAEQAAAAGHSLGH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L L IHG LHLLGYDH + + M L+ +LE+ Sbjct: 111 ELALLTIHGVLHLLGYDHGEPDEEKEMFALQDRLLEE 147 >gi|291567588|dbj|BAI89860.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 186 Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 23/174 (13%) Query: 11 LDLQIAVENALWG--------------DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVE 56 + L++ +E+ W I T E F + + L Y E Sbjct: 1 MQLEVNIEDNFWSGKDGESMTSGGRGEKAIASETW-ESWFQQWLQQLDP--YLPPAKGYE 57 Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIVLAYEI 110 LSL TD I+ N +YR +D+ T+VLSF S LGDI+++ E Sbjct: 58 LSLRLTDDREIQAFNAQYRQLDQATDVLSFAALETSLVMPAEHLSLHPCYLGDIIISVET 117 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A L L HG LHLLG+DH DD+ M ++++L+ + + Sbjct: 118 AFRQAQQARHNLTTELAWLTSHGLLHLLGWDHPDDRSLTRMLEQQKALLQKVNL 171 >gi|253997234|ref|YP_003049298.1| hypothetical protein Mmol_1868 [Methylotenera mobilis JLW8] gi|253983913|gb|ACT48771.1| protein of unknown function UPF0054 [Methylotenera mobilis JLW8] Length = 145 Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 23/165 (13%) Query: 8 LPRL--DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 +P+L +Q A + R + E+++ D+ Sbjct: 1 MPKLAATIQYASDADNIPSASLFRKWAKAALRV---------------DTEVTIRIVDAA 45 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 ++LN YRG D TNVL+FP ++GDI++ ++ EA K E H Sbjct: 46 EGQSLNNTYRGKDYATNVLTFPLTEE------PYLMGDIIICAPVVAAEAEAQHKSLEAH 99 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HL +HG LHL GYDH + A +MEGLE +I+ LG PY + Sbjct: 100 YAHLTVHGILHLHGYDHEIEAQAELMEGLETAIVTKLGYASPYLI 144 >gi|296130045|ref|YP_003637295.1| protein of unknown function UPF0054 [Cellulomonas flavigena DSM 20109] gi|296021860|gb|ADG75096.1| protein of unknown function UPF0054 [Cellulomonas flavigena DSM 20109] Length = 150 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + DE L V +L + D+ + L Sbjct: 1 MSVEVSNESGVEVDEAEFAALGRYVLDAM----------HVHPQADLFVRLVDTATMTDL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + + PT+VLSFP + D +LGD+VL E+ +A G + Sbjct: 51 HVRWMDEPGPTDVLSFPMDELTPGREGDPAGPGVLGDVVLCPEVAATQARAAGHSTAEEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L HG LHLLGYDHV+ + M L+R +L Sbjct: 111 LLLTTHGILHLLGYDHVEPDEEKEMFALQRRLL 143 >gi|269127453|ref|YP_003300823.1| hypothetical protein Tcur_3246 [Thermomonospora curvata DSM 43183] gi|268312411|gb|ACY98785.1| protein of unknown function UPF0054 [Thermomonospora curvata DSM 43183] Length = 156 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 19/160 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + DE L L V + + ELSL+ D + L Sbjct: 1 MSIEVLNESGVEVDEQALVRLARHVLDE----------LRVHPLAELSLLLVDEEAMSEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKE 121 + ++ G PT+VL+FP + +LGD+VL + E + G Sbjct: 51 HVKWMGEPGPTDVLAFPMDELRPGHRPGGGEEEDPDPALLGDVVLCPAVAERQGAEAGHG 110 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + L L HG LHLLGYDH D ++ M GL+ +L Sbjct: 111 TQAELELLCTHGILHLLGYDHADPEEHKEMFGLQERLLNS 150 >gi|115314700|ref|YP_763423.1| hypothetical protein FTH_0870 [Francisella tularensis subsp. holarctica OSU18] gi|156502302|ref|YP_001428367.1| hypothetical protein FTA_0935 [Francisella tularensis subsp. holarctica FTNF002-00] gi|290953584|ref|ZP_06558205.1| hypothetical protein FtulhU_04454 [Francisella tularensis subsp. holarctica URFT1] gi|295313085|ref|ZP_06803775.1| hypothetical protein FtulhU_04439 [Francisella tularensis subsp. holarctica URFT1] gi|122325277|sp|Q0BM98|RRMF_FRATO RecName: Full=Probable rRNA maturation factor gi|171769928|sp|A7NBQ8|RRMF_FRATF RecName: Full=Probable rRNA maturation factor gi|115129599|gb|ABI82786.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica OSU18] gi|156252905|gb|ABU61411.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 162 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 12/160 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L++ ++ + + K + + K + + E++L + I+ + Sbjct: 4 LNINFINDDEH-------PIPSQDLLLKCLQLVADKHHI---SHAEVNLNIVSNDEIQQI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N ++R DKPTN++SF D ++ LGDIV+A ++E EA KE +H H Sbjct: 54 NKQFRNKDKPTNIISFEFEKPQGLPDDIANDFLGDIVIAPAVLENEAKEQNKEINDHWQH 113 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 + IHG LHLLGYDH DD++A VME LE +L LGI +PY Sbjct: 114 IFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGIANPY 153 >gi|108800421|ref|YP_640618.1| putative metalloprotease [Mycobacterium sp. MCS] gi|119869550|ref|YP_939502.1| putative metalloprotease [Mycobacterium sp. KMS] gi|126436044|ref|YP_001071735.1| putative metalloprotease [Mycobacterium sp. JLS] gi|122976747|sp|Q1B6C2|RRMF_MYCSS RecName: Full=Probable rRNA maturation factor gi|145558813|sp|A1UIQ4|RRMF_MYCSK RecName: Full=Probable rRNA maturation factor gi|166232596|sp|A3Q267|RRMF_MYCSJ RecName: Full=Probable rRNA maturation factor gi|108770840|gb|ABG09562.1| protein of unknown function UPF0054 [Mycobacterium sp. MCS] gi|119695639|gb|ABL92712.1| protein of unknown function UPF0054 [Mycobacterium sp. KMS] gi|126235844|gb|ABN99244.1| protein of unknown function UPF0054 [Mycobacterium sp. JLS] Length = 177 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V K ELS+V D+ + L Sbjct: 1 MSIEVSNESGIDVSEEELISVARFVIEKM----------NVNPAAELSMVLLDTSSMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP MLGDIVL E +A G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPAMLGDIVLCPEFAAKQAETAGHSLGH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L L +HG LHLLGYDH + + M L+R +LE+ Sbjct: 111 ELALLTVHGVLHLLGYDHAEPDEEKEMFALQRELLEE 147 >gi|254995418|ref|ZP_05277608.1| hypothetical protein AmarM_05793 [Anaplasma marginale str. Mississippi] Length = 154 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 8/156 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 +++ + W + AK V + + ++ +V + + LN Sbjct: 2 IEVNIHTRGWYKLVGKPKTS----AKRVIRFCLSELDITKYDPKVFVVLANDALLLELNS 57 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +YRGI K TNVLSF S LG+I L+ E I E+ + +H H++IH Sbjct: 58 QYRGIHKATNVLSFSYEKLSPGC----CLGEIYLSMERIAEESLEMDVAVRSHFFHMLIH 113 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 G LH+LGYDH + +DA M+ LE +L LGI +PY Sbjct: 114 GMLHILGYDHEEPEDAITMQALEVGLLAKLGIRNPY 149 >gi|212638691|ref|YP_002315211.1| putative metal-dependent hydrolase [Anoxybacillus flavithermus WK1] gi|212560171|gb|ACJ33226.1| Predicted metal-dependent hydrolase [Anoxybacillus flavithermus WK1] Length = 194 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 14/161 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L + E +E L E + A + E+S+ F D+ +I Sbjct: 40 MLIIDFIDETNEMTEEQMN--LIEQLLQHAAKE------EHVPDEAEVSVTFVDNEKIRE 91 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFE 123 +N +YRG D+PT+V+SF + + +LGDI+++ +A G F Sbjct: 92 INRDYRGKDQPTDVISFALEEMGEEEIAIVGADVPPVLGDIIISVPKAREQAEQYGHSFM 151 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L +HGFLHLLGYDH +++ VM + +L+ G+ Sbjct: 152 RELGFLAVHGFLHLLGYDHETEEEEKVMFAKQEQLLQQFGL 192 >gi|22125096|ref|NP_668519.1| putative metalloprotease [Yersinia pestis KIM 10] gi|45440925|ref|NP_992464.1| putative metalloprotease [Yersinia pestis biovar Microtus str. 91001] gi|108808472|ref|YP_652388.1| putative metalloprotease [Yersinia pestis Antiqua] gi|108811268|ref|YP_647035.1| putative metalloprotease [Yersinia pestis Nepal516] gi|145599897|ref|YP_001163973.1| putative metalloprotease [Yersinia pestis Pestoides F] gi|149365481|ref|ZP_01887516.1| hypothetical protein YPE_0646 [Yersinia pestis CA88-4125] gi|162421082|ref|YP_001606319.1| putative metalloprotease [Yersinia pestis Angola] gi|165925376|ref|ZP_02221208.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Orientalis str. F1991016] gi|165937587|ref|ZP_02226149.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Orientalis str. IP275] gi|166008624|ref|ZP_02229522.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Antiqua str. E1979001] gi|166212421|ref|ZP_02238456.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Antiqua str. B42003004] gi|167399628|ref|ZP_02305152.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422550|ref|ZP_02314303.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423805|ref|ZP_02315558.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467946|ref|ZP_02332650.1| hypothetical protein YpesF_08614 [Yersinia pestis FV-1] gi|218929699|ref|YP_002347574.1| putative metalloprotease [Yersinia pestis CO92] gi|229838166|ref|ZP_04458325.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895958|ref|ZP_04511128.1| conserved protein [Yersinia pestis Pestoides A] gi|229898723|ref|ZP_04513868.1| conserved protein [Yersinia pestis biovar Orientalis str. India 195] gi|229901506|ref|ZP_04516628.1| conserved protein [Yersinia pestis Nepal516] gi|270489692|ref|ZP_06206766.1| metalloprotein, YbeY/ UPF0054family [Yersinia pestis KIM D27] gi|294504422|ref|YP_003568484.1| hypothetical protein YPZ3_2312 [Yersinia pestis Z176003] gi|26006931|sp|Q8ZDF0|RRMF_YERPE RecName: Full=Probable rRNA maturation factor gi|123245656|sp|Q1C529|RRMF_YERPA RecName: Full=Probable rRNA maturation factor gi|123246625|sp|Q1CKP5|RRMF_YERPN RecName: Full=Probable rRNA maturation factor gi|166228416|sp|A4TNY8|RRMF_YERPP RecName: Full=Probable rRNA maturation factor gi|226701655|sp|A9R6Y0|RRMF_YERPG RecName: Full=Probable rRNA maturation factor gi|21957951|gb|AAM84770.1|AE013722_9 hypothetical protein y1193 [Yersinia pestis KIM 10] gi|45435784|gb|AAS61341.1| Predicted metal-dependent hydrolase [Yersinia pestis biovar Microtus str. 91001] gi|108774916|gb|ABG17435.1| hypothetical protein YPN_1104 [Yersinia pestis Nepal516] gi|108780385|gb|ABG14443.1| hypothetical protein YPA_2479 [Yersinia pestis Antiqua] gi|115348310|emb|CAL21241.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145211593|gb|ABP41000.1| hypothetical protein YPDSF_2634 [Yersinia pestis Pestoides F] gi|149291894|gb|EDM41968.1| hypothetical protein YPE_0646 [Yersinia pestis CA88-4125] gi|162353897|gb|ABX87845.1| conserved hypothetical protein TIGR00043 [Yersinia pestis Angola] gi|165914337|gb|EDR32952.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Orientalis str. IP275] gi|165922983|gb|EDR40134.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Orientalis str. F1991016] gi|165993006|gb|EDR45307.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Antiqua str. E1979001] gi|166206352|gb|EDR50832.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Antiqua str. B42003004] gi|166958564|gb|EDR55585.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052132|gb|EDR63540.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057975|gb|EDR67721.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681435|gb|EEO77529.1| conserved protein [Yersinia pestis Nepal516] gi|229688271|gb|EEO80342.1| conserved protein [Yersinia pestis biovar Orientalis str. India 195] gi|229694532|gb|EEO84579.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700881|gb|EEO88910.1| conserved protein [Yersinia pestis Pestoides A] gi|262362588|gb|ACY59309.1| hypothetical protein YPD4_2402 [Yersinia pestis D106004] gi|262366408|gb|ACY62965.1| hypothetical protein YPD8_2290 [Yersinia pestis D182038] gi|270338196|gb|EFA48973.1| metalloprotein, YbeY/ UPF0054family [Yersinia pestis KIM D27] gi|294354881|gb|ADE65222.1| hypothetical protein YPZ3_2312 [Yersinia pestis Z176003] gi|320016177|gb|ADV99748.1| conserved protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 157 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQIA ++ E + E V + + + E+++ D Sbjct: 1 MSQVILDLQIACADSQGLPTEGDFQRWLEAVL------------PLFQPVSEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DK TNVLSFP + +LGD+++ +++E EA K Sbjct: 49 AESHDLNLTYRGKDKSTNVLSFPFE--APPEIELPLLGDLIICRQVVEKEAIEQEKALLA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH+DD++A ME +E I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIDDEEAEEMELIETEIMHGLGYPDPYISE 153 >gi|68535676|ref|YP_250381.1| putative metalloprotease [Corynebacterium jeikeium K411] gi|260578250|ref|ZP_05846166.1| metalloprotease [Corynebacterium jeikeium ATCC 43734] gi|123651314|sp|Q4JWP4|RRMF_CORJK RecName: Full=Probable rRNA maturation factor gi|68263275|emb|CAI36763.1| conserved hypothetical protein [Corynebacterium jeikeium K411] gi|258603552|gb|EEW16813.1| metalloprotease [Corynebacterium jeikeium ATCC 43734] Length = 182 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ E++ L +V + ELS+ D IE L Sbjct: 1 MSIEVFNESGR--GEVNEEELIDVARYALWT-------LDVHPAAELSIHIVDLETIEDL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-------GCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + + + PT+V+SFP + S MLGDI+L + E +A G Sbjct: 52 HVRWMDLPGPTDVMSFPMDELTPGWGRKDAAEPSPAMLGDIMLCPDFAEGQATRAGHSLA 111 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + L L +HG LHLLG+DHV +D M L+ IL + Sbjct: 112 HELDLLTVHGVLHLLGFDHVTPEDEQKMFALQNEILAN 149 >gi|56421026|ref|YP_148344.1| putative metalloprotease [Geobacillus kaustophilus HTA426] gi|261418491|ref|YP_003252173.1| metalloprotease [Geobacillus sp. Y412MC61] gi|297529343|ref|YP_003670618.1| hypothetical protein GC56T3_0999 [Geobacillus sp. C56-T3] gi|319767548|ref|YP_004133049.1| hypothetical protein GYMC52_2525 [Geobacillus sp. Y412MC52] gi|59799076|sp|Q5KX10|RRMF_GEOKA RecName: Full=Probable rRNA maturation factor gi|56380868|dbj|BAD76776.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] gi|261374948|gb|ACX77691.1| protein of unknown function UPF0054 [Geobacillus sp. Y412MC61] gi|297252595|gb|ADI26041.1| protein of unknown function UPF0054 [Geobacillus sp. C56-T3] gi|317112414|gb|ADU94906.1| protein of unknown function UPF0054 [Geobacillus sp. Y412MC52] Length = 156 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIV 105 + E+S+ F D+ RI +N +YRG D PT+VLSF + +LGDIV Sbjct: 36 PDGAEVSVTFVDNERIRAMNRDYRGKDAPTDVLSFALEEEGEEEVHIVGADMPPVLGDIV 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F L L +HGFLHLLGYDH +++ VM + IL G+ Sbjct: 96 ISIPKAKEQAAAYGHSFMRELGFLAVHGFLHLLGYDHGTEEEERVMFAKQEDILARFGL 154 >gi|118462943|ref|YP_881245.1| metalloprotease [Mycobacterium avium 104] gi|254774751|ref|ZP_05216267.1| putative metalloprotease [Mycobacterium avium subsp. avium ATCC 25291] gi|145572765|sp|A0QEA7|RRMF_MYCA1 RecName: Full=Probable rRNA maturation factor gi|118164230|gb|ABK65127.1| conserved hypothetical protein [Mycobacterium avium 104] Length = 177 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V AK ELS+V D+ + L Sbjct: 1 MSIEVSNESGIDVSEAELISVARFVIAKM----------DVNPAAELSMVLLDTAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP MLGDIVL E +A G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPAMLGDIVLCPEFAADQAAAAGHSLGH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L L IHG LHLLGYDH + + M L+ +LE+ Sbjct: 111 ELALLTIHGVLHLLGYDHGEPDEEKEMFALQDRLLEE 147 >gi|165933701|ref|YP_001650490.1| metal-binding heat shock protein [Rickettsia rickettsii str. Iowa] gi|189038666|sp|B0BV24|RRMF_RICRO RecName: Full=Probable rRNA maturation factor gi|165908788|gb|ABY73084.1| hypothetical metal-binding protein [Rickettsia rickettsii str. Iowa] Length = 167 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 84/169 (49%), Gaps = 12/169 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++++I W + + + + L+ F K ELS++ T++ I Sbjct: 1 MINVEIVRHYNKWREHKQINKSLIKKITQNI--LLRFDNFSKIKQFELSILLTNAAEILI 58 Query: 70 LNFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 LN ++R I+K TNVLSFP+ + LGDI YE+I E+ Sbjct: 59 LNKQFRNIEKATNVLSFPSNELNWQDLYSKLEFLGDSDYMHLGDIAFCYEVIYNESCEQH 118 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K FENH +HL+IH LHL+G+DH +D +A +ME LE IL GI PY Sbjct: 119 KTFENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEILSYFGIFPPY 167 >gi|284050359|ref|ZP_06380569.1| putative metalloprotease [Arthrospira platensis str. Paraca] Length = 186 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 23/174 (13%) Query: 11 LDLQIAVENALWG--------------DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVE 56 + L++ +E+ W I T E F + + L Y E Sbjct: 1 MQLEVNIEDNFWSGKDGESMTYGGRGEKAIASETW-ESWFQQWLQQLDP--YLPPAKGYE 57 Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIVLAYEI 110 LSL TD I+ N +YR +D+ T+VLSF S LGDI+++ E Sbjct: 58 LSLRLTDDREIQAFNAQYRQLDQATDVLSFAALETSLVMPAEHLSLHPCYLGDIIISVET 117 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A L L HG LHLLG+DH DD+ M ++++L+ + + Sbjct: 118 AFRQAQQARHNLTTELAWLTSHGLLHLLGWDHPDDRSLTRMLEQQKALLQKVNL 171 >gi|171060619|ref|YP_001792968.1| hypothetical protein Lcho_3949 [Leptothrix cholodnii SP-6] gi|170778064|gb|ACB36203.1| protein of unknown function UPF0054 [Leptothrix cholodnii SP-6] Length = 160 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 7/116 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 E ++ D+ + LN +YRG D TNVL+F + ++ D+VL ++E Sbjct: 46 PGEFTVRIVDAEEAQGLNRDYRGKDYATNVLTFDYS------AEPVVAADLVLCAPVVEA 99 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV-MEGLERSILEDLGINDPY 168 EA GK H HL++HG LH GYDH DD++A ME ER +L LG +DPY Sbjct: 100 EAAAAGKTLVAHYAHLLVHGALHAQGYDHEDDEEAAECMEAREREVLAALGFDDPY 155 >gi|332530325|ref|ZP_08406271.1| putative metal-dependent hydrolase [Hylemonella gracilis ATCC 19624] gi|332040311|gb|EGI76691.1| putative metal-dependent hydrolase [Hylemonella gracilis ATCC 19624] Length = 169 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 16/164 (9%) Query: 7 NLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 LP L L + + E H + L + + + + + E+++ + Sbjct: 21 ELPDLTLDL--QFGNAVPEAHKKLLSKARVTRWMRMALLR-------DAEITVRVVGAAE 71 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 LN +YR D TNVL+F ++ D+VL ++ EA K E H Sbjct: 72 GRALNRDYRNKDYATNVLTFDYTKE------PVVTADLVLCAPVVAKEAKEQNKSPEEHY 125 Query: 127 VHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH + DA ME LE ++E +G+ +PYE Sbjct: 126 AHLLVHGTLHAQGYDHETSETDALEMEALEVLLMEGMGLGNPYE 169 >gi|220920279|ref|YP_002495580.1| hypothetical protein Mnod_0233 [Methylobacterium nodulans ORS 2060] gi|219944885|gb|ACL55277.1| protein of unknown function UPF0054 [Methylobacterium nodulans ORS 2060] Length = 159 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 78/161 (48%), Gaps = 10/161 (6%) Query: 12 DLQIAVENALWGDEI-HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++ + VE+ W + L A++ L G VE+S+V TD ++ L Sbjct: 4 EIDVVVEDERWDRAVPDLGGFVRGAVEAALAVLPPGG------PVEVSVVLTDDAAVQEL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +RG DKPTNVLSFP G LGD+VLAY+ + E+ K +HL HL+ Sbjct: 58 NRTWRGKDKPTNVLSFPAGH--PHGGDLRPLGDVVLAYDTMLRESGEQSKPLGHHLAHLL 115 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSI-LEDLGINDPYEV 170 +HG LHLLG DH + + L LG+ DPY Sbjct: 116 VHGTLHLLGQDHETGEAEAEAMEALEVVALRRLGVPDPYGD 156 >gi|157828976|ref|YP_001495218.1| putative metalloprotease [Rickettsia rickettsii str. 'Sheila Smith'] gi|166228797|sp|A8GTI5|RRMF_RICRS RecName: Full=Probable rRNA maturation factor gi|157801457|gb|ABV76710.1| hypothetical protein A1G_06285 [Rickettsia rickettsii str. 'Sheila Smith'] Length = 167 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 84/169 (49%), Gaps = 12/169 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++++I W + + + + L+ F K ELS++ T++ I Sbjct: 1 MINVEIVRHYNKWREHKQINKSLIKKITQNI--LLRFDNFSKIKQFELSILLTNAAEILI 58 Query: 70 LNFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 LN ++R I+K TNVLSFP+ + LGDI YE+I E+ Sbjct: 59 LNKQFRNIEKATNVLSFPSNELNWQDLYSKLEFLGDSDYMHLGDIAFCYEVIYNESCEQY 118 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K FENH +HL+IH LHL+G+DH +D +A +ME LE IL GI PY Sbjct: 119 KTFENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEILSYFGIFPPY 167 >gi|56417248|ref|YP_154322.1| hypothetical protein AM1264 [Anaplasma marginale str. St. Maries] gi|222475612|ref|YP_002564029.1| hypothetical protein AMF_953 [Anaplasma marginale str. Florida] gi|255003605|ref|ZP_05278569.1| hypothetical protein AmarPR_05268 [Anaplasma marginale str. Puerto Rico] gi|255004734|ref|ZP_05279535.1| hypothetical protein AmarV_05648 [Anaplasma marginale str. Virginia] gi|62901414|sp|Q5P9G3|RRMF_ANAMM RecName: Full=Probable rRNA maturation factor gi|254807282|sp|B9KH69|RRMF_ANAMF RecName: Full=Probable rRNA maturation factor gi|56388480|gb|AAV87067.1| hypothetical protein AM1264 [Anaplasma marginale str. St. Maries] gi|222419750|gb|ACM49773.1| Conserved hypothetical protein [Anaplasma marginale str. Florida] Length = 154 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 8/156 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 +++ + W + AK V + + ++ +V + + LN Sbjct: 2 IEVNIHTRGWYKLVGKPKTS----AKRVIRFCLSELDITKYDPKVFVVLANDALLLELNS 57 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +YRGI K TNVLSF S LG+I L+ E I E+ + +H H++IH Sbjct: 58 QYRGIHKATNVLSFSYEKLSPGC----CLGEIYLSMERIAEESLEMDVAVRSHFFHMLIH 113 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 G LH+LGYDH + ++A M+ LE +L LGI +PY Sbjct: 114 GMLHILGYDHEEPEEAITMQALEVGLLAKLGIRNPY 149 >gi|170741365|ref|YP_001770020.1| hypothetical protein M446_3180 [Methylobacterium sp. 4-46] gi|168195639|gb|ACA17586.1| protein of unknown function UPF0054 [Methylobacterium sp. 4-46] Length = 159 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 85/159 (53%), Gaps = 10/159 (6%) Query: 12 DLQIAVENALWGDEI-HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++ + +E+ W I L A++ L VE+S++ TD ++ L Sbjct: 4 EIDVVLEDERWEAAIPDLGPFVRRAVEAALAILPPA------EAVEVSVLLTDDEAVQEL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +RG DKPTNVLSFP A G + LGD+VLAY+ + E+ K +HL HL+ Sbjct: 58 NRTWRGKDKPTNVLSFPAGHAH--GGAPRPLGDVVLAYDTMLRESGEQSKPLGHHLAHLL 115 Query: 131 IHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPY 168 +HG LHLLG DH + +A ME LE + L LG+ DPY Sbjct: 116 VHGTLHLLGQDHETGEAEAEAMEALEAAALARLGVPDPY 154 >gi|121534218|ref|ZP_01666043.1| protein of unknown function UPF0054 [Thermosinus carboxydivorans Nor1] gi|121307321|gb|EAX48238.1| protein of unknown function UPF0054 [Thermosinus carboxydivorans Nor1] Length = 155 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 47/156 (30%), Positives = 68/156 (43%), Gaps = 8/156 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I + N +++ E ++ E+S+V D I LN Sbjct: 1 MEIIISN--LQEKMSFTPQMEQTVIAVLNKAAEVYGL--SEQTEVSIVLVDDEYIFELNR 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLM----LGDIVLAYEIIEIEANVLGKEFENHLVH 128 +YR D PT+VLSF + LGDIV++ E +A G E L + Sbjct: 57 QYRDKDVPTDVLSFALNEGDEPAIINDPAAMLLGDIVISLETAARQAEEFGHGLERELAY 116 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L +HG LHLLGYDH +++ M E IL LGI Sbjct: 117 LTLHGMLHLLGYDHETEEERVKMRNEEEYILSQLGI 152 >gi|325963343|ref|YP_004241249.1| hypothetical protein Asphe3_19600 [Arthrobacter phenanthrenivorans Sphe3] gi|323469430|gb|ADX73115.1| conserved hypothetical protein TIGR00043 [Arthrobacter phenanthrenivorans Sphe3] Length = 157 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 14/156 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + DE L L +F + ELS++ D +E L Sbjct: 1 MSIEVNNESGVQVDEAELVMLSRYIFEQ----------LFIHPQAELSILLVDEPAMEKL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL----MLGDIVLAYEIIEIEANVLGKEFENHL 126 + E T+VLS P + MLGDI + ++ +++A G ++ + Sbjct: 51 HIELMDEPGSTDVLSVPMDELTPGTPDRPTPQGMLGDIAICPQVAQMQAKNAGHTLQDEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L HG LHLLGYDH + ++ M GL+R +L Sbjct: 111 LLLTTHGILHLLGYDHAEPEEKAEMFGLQRELLSGF 146 >gi|271963824|ref|YP_003338020.1| hypothetical protein Sros_2296 [Streptosporangium roseum DSM 43021] gi|270506999|gb|ACZ85277.1| protein of unknown function UPF0054 [Streptosporangium roseum DSM 43021] Length = 160 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 21/162 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + DE + +L V + + ELS++ D + L Sbjct: 1 MSIEVNNESGVEVDEGLIVSLAGHVLERM----------DINPLAELSILIVDEEAMAVL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG-----------CSSLMLGDIVLAYEIIEIEANVLG 119 + ++ G PT+VLSFP +LGD+VL ++ +A G Sbjct: 51 HEQWMGEPGPTDVLSFPMDELRPGPGSGARQEGDAPTDPALLGDVVLCPQVAAKQAAEAG 110 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 E L L HG LHLLGYDH + ++ M GL+ +LE Sbjct: 111 HSTEAELELLCTHGILHLLGYDHAEPEEHKEMFGLQGELLES 152 >gi|41408257|ref|NP_961093.1| putative metalloprotease [Mycobacterium avium subsp. paratuberculosis K-10] gi|59799130|sp|Q73XZ9|RRMF_MYCPA RecName: Full=Probable rRNA maturation factor gi|41396612|gb|AAS04476.1| hypothetical protein MAP_2159c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 177 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V AK ELS+V D+ + L Sbjct: 1 MSIEVSNESGIDVSEAELISVARFVIAKM----------DVNPAAELSMVLLDTAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP MLGDIVL E +A G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPAMLGDIVLCPEFAADQAAAAGHSLGH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L L IHG LHLLGYDH + + M L+ +LE+ Sbjct: 111 ELALLTIHGVLHLLGYDHGEPDEEKEMFALQDRLLEE 147 >gi|209542256|ref|YP_002274485.1| hypothetical protein Gdia_0068 [Gluconacetobacter diazotrophicus PAl 5] gi|209529933|gb|ACI49870.1| protein of unknown function UPF0054 [Gluconacetobacter diazotrophicus PAl 5] Length = 202 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 15/158 (9%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 D + V +A W + A+ ++ + + ++++ + I LN Sbjct: 46 DCDVVVTDARWHGAVPG--------IAALVRRTARAAWGGDAPGPVTIMLDNDRAIRRLN 97 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +R +KPTNVL+F D L GDI++A E + EA G+ +HL+HL++ Sbjct: 98 ARHRDRNKPTNVLTF-------DYPGGLPGGDIMIALETVRREAQAAGRPIRHHLMHLVV 150 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HG LHL G+DH +A ME E IL L + +P++ Sbjct: 151 HGILHLRGHDHHQAGEARRMEMEEARILGRLSVPNPWK 188 >gi|300866177|ref|ZP_07110895.1| putative metalloprotease Tery_5027 [Oscillatoria sp. PCC 6506] gi|300335833|emb|CBN56055.1| putative metalloprotease Tery_5027 [Oscillatoria sp. PCC 6506] Length = 177 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 23/175 (13%) Query: 11 LDLQIAVENALW-----------GDEIHL----RTLCEVVFAKAVSNLISKGYFVKENIV 55 ++++++V++ W I E F + L V Sbjct: 1 MEIEVSVQDYFWEANESTSATISPKSIAEGQIHPETWETWFQTWLETLSPDIGPVP--SC 58 Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIVLAYE 109 ELSL T ++TLN +YR ++PT+VL+F + L LGDIV++ + Sbjct: 59 ELSLRLTGDPEMQTLNSQYRQQNQPTDVLAFAALEVNCPHPQEMVASMPLYLGDIVISVD 118 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A L L HGFLHLLG+DH D+ M + +L+ +G+ Sbjct: 119 TAHRQAQQQHHPLTTELAWLAAHGFLHLLGWDHPDEDSLNSMLNQQEILLKTIGL 173 >gi|148244289|ref|YP_001218983.1| hypothetical protein COSY_0125 [Candidatus Vesicomyosocius okutanii HA] gi|166200323|sp|A5CXS1|RRMF_VESOH RecName: Full=Probable rRNA maturation factor gi|146326116|dbj|BAF61259.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii HA] Length = 145 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 59/154 (38%), Positives = 80/154 (51%), Gaps = 10/154 (6%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 + ++N + D + K V + EL + D I+ LN Y Sbjct: 2 VIIQNNI-HDLSVNEDDLSCILQKVVKEW-------GKGESELLVRLVDEAEIQNLNKVY 53 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 R D+PTNVLSFPT +LGD+V+ +I+ E+ K F NHL+H+ +HG Sbjct: 54 RYKDEPTNVLSFPTDL--PIEIDEKILGDVVICIQIVLKESIEQHKSFNNHLMHMAVHGT 111 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 LHLLGYDH+D KDA M LER IL +GIN+PY Sbjct: 112 LHLLGYDHIDTKDAQNMANLERKILAKIGINNPY 145 >gi|15841879|ref|NP_336916.1| putative metalloprotease [Mycobacterium tuberculosis CDC1551] gi|167968755|ref|ZP_02551032.1| hypothetical protein MtubH3_12240 [Mycobacterium tuberculosis H37Ra] gi|215404293|ref|ZP_03416474.1| putative metalloprotease [Mycobacterium tuberculosis 02_1987] gi|215412113|ref|ZP_03420877.1| putative metalloprotease [Mycobacterium tuberculosis 94_M4241A] gi|215427743|ref|ZP_03425662.1| putative metalloprotease [Mycobacterium tuberculosis T92] gi|215431307|ref|ZP_03429226.1| putative metalloprotease [Mycobacterium tuberculosis EAS054] gi|215446611|ref|ZP_03433363.1| putative metalloprotease [Mycobacterium tuberculosis T85] gi|218754095|ref|ZP_03532891.1| putative metalloprotease [Mycobacterium tuberculosis GM 1503] gi|219558359|ref|ZP_03537435.1| putative metalloprotease [Mycobacterium tuberculosis T17] gi|254232509|ref|ZP_04925836.1| hypothetical protein TBCG_02311 [Mycobacterium tuberculosis C] gi|254365144|ref|ZP_04981190.1| hypothetical protein TBHG_02306 [Mycobacterium tuberculosis str. Haarlem] gi|254551414|ref|ZP_05141861.1| putative metalloprotease [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187370|ref|ZP_05764844.1| putative metalloprotease [Mycobacterium tuberculosis CPHL_A] gi|260201491|ref|ZP_05768982.1| putative metalloprotease [Mycobacterium tuberculosis T46] gi|260205668|ref|ZP_05773159.1| putative metalloprotease [Mycobacterium tuberculosis K85] gi|294994529|ref|ZP_06800220.1| putative metalloprotease [Mycobacterium tuberculosis 210] gi|297634969|ref|ZP_06952749.1| putative metalloprotease [Mycobacterium tuberculosis KZN 4207] gi|297731961|ref|ZP_06961079.1| putative metalloprotease [Mycobacterium tuberculosis KZN R506] gi|298525849|ref|ZP_07013258.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|313659295|ref|ZP_07816175.1| metal-binding heat shock protein [Mycobacterium tuberculosis KZN V2475] gi|54040529|sp|P67135|RRMF_MYCBO RecName: Full=Probable rRNA maturation factor gi|54042953|sp|P67134|RRMF_MYCTU RecName: Full=Probable rRNA maturation factor gi|171704548|sp|A1KL57|RRMF_MYCBP RecName: Full=Probable rRNA maturation factor gi|172048108|sp|A5U560|RRMF_MYCTA RecName: Full=Probable rRNA maturation factor gi|13882146|gb|AAK46730.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|124601568|gb|EAY60578.1| hypothetical protein TBCG_02311 [Mycobacterium tuberculosis C] gi|134150658|gb|EBA42703.1| hypothetical protein TBHG_02306 [Mycobacterium tuberculosis str. Haarlem] gi|298495643|gb|EFI30937.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] Length = 177 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E+ + E L ++ V AK ELS++ D+ + L Sbjct: 1 MSIEVANESGIDVSEAELVSVARFVIAKM----------DVNPCAELSMLLLDTAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP MLGDIVL E +A G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPSMLGDIVLCPEFAAEQAAAAGHSLGH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L L IHG LHLLGYDH + + M L+ +LE+ Sbjct: 111 ELALLTIHGVLHLLGYDHAEPDEEKEMFALQDRLLEE 147 >gi|319892627|ref|YP_004149502.1| metal-dependent hydrolase [Staphylococcus pseudintermedius HKU10-03] gi|317162323|gb|ADV05866.1| metal-dependent hydrolase [Staphylococcus pseudintermedius HKU10-03] gi|323464335|gb|ADX76488.1| conserved hypothetical protein [Staphylococcus pseudintermedius ED99] Length = 153 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 3/124 (2%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLM 100 +K + ELS+ F D I+ +N +YR DK T+V+SF + Sbjct: 27 FAKNEEGIDEDAELSVTFVDKAEIQEINRDYRQKDKVTDVISFAFEEEEDIFEGMDVPRV 86 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LGDI++ ++ +A G FE L L +HGFLHLLGYDH+ ++D VM G ++ IL Sbjct: 87 LGDIIICTDVAAEQAEQYGHSFERELGFLALHGFLHLLGYDHMTEEDEKVMFGRQKDILN 146 Query: 161 DLGI 164 G+ Sbjct: 147 QFGL 150 >gi|156744199|ref|YP_001434328.1| hypothetical protein Rcas_4283 [Roseiflexus castenholzii DSM 13941] gi|189040181|sp|A7NRW4|RRMF_ROSCS RecName: Full=Probable rRNA maturation factor gi|156235527|gb|ABU60310.1| protein of unknown function UPF0054 [Roseiflexus castenholzii DSM 13941] Length = 159 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 6/136 (4%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 + +AV+ + VE+S++ TD + LN YRG+D PT+VLSF S Sbjct: 23 TLVERAVAQTLRTDDV--AGPVEISILITDDADVHRLNQTYRGVDAPTDVLSFAEDDDHS 80 Query: 94 ---DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDAC 149 + LGDI ++++ + +A G E L L++HG LHLLGYDH D Sbjct: 81 FVRPPDAPRYLGDIAISWDRVVAQAAEYGHSRERELAFLVVHGVLHLLGYDHERGPVDEA 140 Query: 150 VMEGLERSILEDLGIN 165 M E +IL LG++ Sbjct: 141 DMRAREEAILGALGLS 156 >gi|225175056|ref|ZP_03729052.1| protein of unknown function UPF0054 [Dethiobacter alkaliphilus AHT 1] gi|225169232|gb|EEG78030.1| protein of unknown function UPF0054 [Dethiobacter alkaliphilus AHT 1] Length = 155 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 3/115 (2%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA---SSDGCSSLMLGDIVLAY 108 + E+SL D I LN +R +D PT+VLSFP LMLGD++++ Sbjct: 35 PSDAEVSLTLCDDATIHELNKTWRSVDAPTDVLSFPLLGDMTLKVPPGEELMLGDVIISV 94 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 E +A G E +++L +HG LHLLGYDH+++++ M LE +L+++G Sbjct: 95 ERARAQAQEFGHSVEREILYLYVHGLLHLLGYDHLEEEEKREMRSLEEKLLKEVG 149 >gi|269956974|ref|YP_003326763.1| hypothetical protein Xcel_2187 [Xylanimonas cellulosilytica DSM 15894] gi|269305655|gb|ACZ31205.1| protein of unknown function UPF0054 [Xylanimonas cellulosilytica DSM 15894] Length = 153 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 11/153 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E+ + L E FA ++ + ELS++F D+ + L Sbjct: 1 MSIEVANESG-----YDVEGLDEAEFAALARYVLDAMHVHP--QAELSILFVDTTVMTDL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + + PT+VLSFP D LGDIVL E+ +A G + Sbjct: 54 HVRWMDEPGPTDVLSFPMDELRPGREGDLTPPGTLGDIVLCPEVATQQALTAGHSAIEEM 113 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L HG LHLLGYDH + ++ M GL+R +L Sbjct: 114 LLLTTHGILHLLGYDHAEPEEEKEMFGLQRRLL 146 >gi|33866843|ref|NP_898402.1| hypothetical protein SYNW2313 [Synechococcus sp. WH 8102] gi|46577382|sp|Q7U3W4|RRMF_SYNPX RecName: Full=Probable rRNA maturation factor gi|33639444|emb|CAE08828.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 185 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 16/177 (9%) Query: 11 LDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLI----------SKGYFVKENIVELSL 59 ++L +A++ W E + + + + I + + V L L Sbjct: 1 MELDLALDAAGPWSPEDPSSLIETQTWQITLVDWIQTICADPSLPCPALVCQADEVSLGL 60 Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANV 117 FTD I LN +R ++ T+VLSF + S + LGDIV++ + +A+ Sbjct: 61 RFTDDATITALNSTWRQRNQATDVLSFAALEEAPGLPDVSCVELGDIVISLDTARRQASE 120 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL---EDLGINDPYEVD 171 G L L+ HG LHLLG+DH D++ M L+ +L ++ I DP+ VD Sbjct: 121 HGHNLTRELRWLVSHGLLHLLGWDHPDEESLVAMLQLQEQLLDGGSNVRIRDPHSVD 177 >gi|240172994|ref|ZP_04751652.1| putative metalloprotease [Mycobacterium kansasii ATCC 12478] Length = 178 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V K ELS+V D+ + L Sbjct: 1 MSIEVSNESGIDVSETELVSVARFVIDKM----------DVNPGAELSMVLLDTAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP MLGDIVL E +A G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPAMLGDIVLCPEFAAEQAAAAGHSLGH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L L IHG LHLLGYDH + + M L+ +LE+ Sbjct: 111 ELALLTIHGVLHLLGYDHGEPDEEREMFALQERLLEE 147 >gi|284990192|ref|YP_003408746.1| hypothetical protein Gobs_1659 [Geodermatophilus obscurus DSM 43160] gi|284063437|gb|ADB74375.1| protein of unknown function UPF0054 [Geodermatophilus obscurus DSM 43160] Length = 167 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 15/154 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E+ + DE L +C V A+ + ELS++ D+ + TL Sbjct: 1 MPVEVANESEIAVDESSLAAICTYVLAEM----------GVNPMAELSVLCVDADYMSTL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 + + G PT+VL+FP +LGD+VL + +A G ++ Sbjct: 51 HERWMGEKGPTDVLAFPMDELDTGRPDEPDPGPALLGDVVLCPSVAIRQARAAGHTMDDE 110 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L+ L HG LHLLGYDH++ + M GL+ +L Sbjct: 111 LILLATHGVLHLLGYDHMEPDEEKEMFGLQSKLL 144 >gi|24372762|ref|NP_716804.1| putative metalloprotease [Shewanella oneidensis MR-1] gi|29428198|sp|Q8EHN9|RRMF_SHEON RecName: Full=Probable rRNA maturation factor gi|24346837|gb|AAN54249.1|AE015561_9 conserved hypothetical protein TIGR00043 [Shewanella oneidensis MR-1] Length = 153 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 59/159 (37%), Positives = 84/159 (52%), Gaps = 10/159 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDL + V+ A D + + A+ N EL++ D+ + L Sbjct: 3 LDLALDVQYATTSDYLPSEEQLALWVKTAIGN--------SMKQAELTIRIVDARESQML 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP + +LGD+V+ ++E EA K E H H++ Sbjct: 55 NGTYRGKDKPTNVLSFPFE--APPEIELPLLGDLVICASVVENEAREQDKTLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D++A ME LE ++E LG DPY+ Sbjct: 113 VHGCLHLLGYDHIEDEEAEEMESLETQLIESLGFTDPYK 151 >gi|148657696|ref|YP_001277901.1| hypothetical protein RoseRS_3596 [Roseiflexus sp. RS-1] gi|172048089|sp|A5UZ98|RRMF_ROSS1 RecName: Full=Probable rRNA maturation factor gi|148569806|gb|ABQ91951.1| protein of unknown function UPF0054 [Roseiflexus sp. RS-1] Length = 160 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 45/117 (38%), Positives = 62/117 (52%), Gaps = 5/117 (4%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYE 109 VE+ ++ TD ++ LN YRG+D PT+VLSF A S + LGDI +++E Sbjct: 41 PVEVGILITDDAGLQRLNQAYRGVDAPTDVLSFAEADDDSAFVRPPDAPRYLGDIAISWE 100 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGIN 165 + +A G E L L++HG LHLLGYDH D M E IL LG++ Sbjct: 101 RVVAQAAEYGHSRERELAFLVVHGMLHLLGYDHERSPADEADMRAREEEILRALGLS 157 >gi|227504551|ref|ZP_03934600.1| metalloprotease [Corynebacterium striatum ATCC 6940] gi|227198871|gb|EEI78919.1| metalloprotease [Corynebacterium striatum ATCC 6940] Length = 201 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 62/160 (38%), Gaps = 20/160 (12%) Query: 11 LDLQIAVENALWG-DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + ++ E+ G +E L + F E ++ D I Sbjct: 1 MSIEFINESGFEGVNEEMLIDVASFAFGAM----------DINPDAECTITAVDLETIAD 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGK 120 L+ + ++ PT+V+SFP + MLGDIVL E +AN G Sbjct: 51 LHVRWMDLEGPTDVMSFPMDEITPGALGTRPDAPEMGPAMLGDIVLCPEFALRQANAAGH 110 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + L L +HG LHLLGYDH + M L+ +L Sbjct: 111 SLGHELALLTVHGCLHLLGYDHATPAEEKEMFSLQNELLA 150 >gi|323490063|ref|ZP_08095284.1| putative metalloprotease [Planococcus donghaensis MPA1U2] gi|323396359|gb|EGA89184.1| putative metalloprotease [Planococcus donghaensis MPA1U2] Length = 160 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 76/161 (47%), Gaps = 15/161 (9%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + DE E+ F K + +K V ++ E+S+ F + I Sbjct: 1 MIAIDFM-------DETESLDQKELDFVKKILEHAAKQEKVTDS--EVSVTFVTNEMIRD 51 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIVLAYEIIEIEANVLGKEFE 123 +N EYRG D+PT+V+SF MLGDI+++ + + +A G FE Sbjct: 52 INREYRGKDQPTDVISFAMEELGEGETAIIGSQEPRMLGDIIISLDRTKEQAEDFGHSFE 111 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L IHGFLHLLGYDH+ ++D M + IL LGI Sbjct: 112 RELGFLAIHGFLHLLGYDHMTEEDEKKMFSRQEEILVSLGI 152 >gi|319778546|ref|YP_004129459.1| metal-dependent hydrolase [Taylorella equigenitalis MCE9] gi|317108570|gb|ADU91316.1| metal-dependent hydrolase [Taylorella equigenitalis MCE9] Length = 162 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 5/143 (3%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKE-NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 L + + + E + EL+L F LN YR + N+L+ Sbjct: 23 PFEELPRQTLRTWALAAVKRAHEFVEFDSAELNLRFVGPEEARNLNSVYRKKEYVPNILT 82 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + D ++ DI++ +I+ EA GK + H HL++HG LH G+DH+D+ Sbjct: 83 FDYGVDALD----VLRADIIICKDILLKEALDQGKSIKQHACHLVVHGVLHACGFDHMDE 138 Query: 146 KDACVMEGLERSILEDLGINDPY 168 + A ME LE I++ G PY Sbjct: 139 ESAIEMESLEAEIVQSFGFPHPY 161 >gi|302528837|ref|ZP_07281179.1| metal-dependent hydrolase [Streptomyces sp. AA4] gi|302437732|gb|EFL09548.1| metal-dependent hydrolase [Streptomyces sp. AA4] Length = 183 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ + DE + + K + ELS++ +E L Sbjct: 1 MSIEIANESGVDVDEASIVSAARYTLEKM----------EVSPLAELSILCVTLEVMEDL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V++FP S S +LGDIVL + +A G + Sbjct: 51 HERWMDLPGPTDVMAFPMDELDSSRRPDAPDSSPALLGDIVLCPAFAKDQAKTAGHRLID 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + + M GL++ IL + Sbjct: 111 ELHLLTVHGCLHLLGYDHAEPAEEREMFGLQKRILGEF 148 >gi|220912722|ref|YP_002488031.1| metalloprotease [Arthrobacter chlorophenolicus A6] gi|254801508|sp|B8H8R4|RRMF_ARTCA RecName: Full=Probable rRNA maturation factor gi|219859600|gb|ACL39942.1| protein of unknown function UPF0054 [Arthrobacter chlorophenolicus A6] Length = 157 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 14/156 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + DE L L +F + ELS++ D +E L Sbjct: 1 MSIEVNNESGVEVDEAGLVALSRYIFEQ----------LYIHPQAELSILLVDEPAMEKL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL----MLGDIVLAYEIIEIEANVLGKEFENHL 126 + E T+VLS P + MLGDI + ++ +++A G ++ + Sbjct: 51 HIELMDEPGATDVLSVPMDDLTPGTPDRPTPQGMLGDIAICPQVAQVQAKNAGHALQDEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L HG LHLLGYDH + ++ M GL+R +L Sbjct: 111 LLLTTHGILHLLGYDHAEPEEKEEMFGLQRELLTGF 146 >gi|172041012|ref|YP_001800726.1| putative metalloprotease [Corynebacterium urealyticum DSM 7109] gi|171852316|emb|CAQ05292.1| conserved hypothetical protein [Corynebacterium urealyticum DSM 7109] Length = 200 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 16/163 (9%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P + +++ E+ WG EI+ L +V + + + ELS+ D Sbjct: 1 MENPLVSIEVFNESG-WG-EINEEELIDVARYTLWTMDV-------HSSAELSIHIVDEE 51 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASS-------DGCSSLMLGDIVLAYEIIEIEANVL 118 I L+ + + PT+V+SFP + S MLGDI+L + +A Sbjct: 52 TIADLHLRWLNLPGPTDVMSFPMDELTPGWGRKDGPPVSPAMLGDIMLCPSFAKGQAERA 111 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 G + L L +HG LHLLG+DHV ++ M ++ +L + Sbjct: 112 GHSLAHELDLLTVHGVLHLLGFDHVTPEEEQQMFSIQNEVLAN 154 >gi|167037777|ref|YP_001665355.1| putative metalloprotease [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039983|ref|YP_001662968.1| putative metalloprotease [Thermoanaerobacter sp. X514] gi|256751971|ref|ZP_05492841.1| protein of unknown function UPF0054 [Thermoanaerobacter ethanolicus CCSD1] gi|300914073|ref|ZP_07131389.1| protein of unknown function UPF0054 [Thermoanaerobacter sp. X561] gi|307724694|ref|YP_003904445.1| hypothetical protein Thet_1564 [Thermoanaerobacter sp. X513] gi|320116192|ref|YP_004186351.1| hypothetical protein Thebr_1395 [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|238687637|sp|B0K706|RRMF_THEPX RecName: Full=Probable rRNA maturation factor gi|238687667|sp|B0KA56|RRMF_THEP3 RecName: Full=Probable rRNA maturation factor gi|166854223|gb|ABY92632.1| protein of unknown function UPF0054 [Thermoanaerobacter sp. X514] gi|166856611|gb|ABY95019.1| protein of unknown function UPF0054 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749176|gb|EEU62210.1| protein of unknown function UPF0054 [Thermoanaerobacter ethanolicus CCSD1] gi|300889008|gb|EFK84154.1| protein of unknown function UPF0054 [Thermoanaerobacter sp. X561] gi|307581755|gb|ADN55154.1| protein of unknown function UPF0054 [Thermoanaerobacter sp. X513] gi|319929283|gb|ADV79968.1| protein of unknown function UPF0054 [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 159 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 53/163 (32%), Positives = 76/163 (46%), Gaps = 17/163 (10%) Query: 13 LQIAVENALWG-DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 + I ++N D I+L L E V + + VE+S+ F D+ I LN Sbjct: 1 MNILIDNRQDKVDAINLEELVEKVIKTVLE------VEEVIDNVEVSVSFVDNEEIRKLN 54 Query: 72 FEYRGIDKPTNVLSFPTAFASS----------DGCSSLMLGDIVLAYEIIEIEANVLGKE 121 YRGIDKPT+VLSFP A D +GDIV++ E ++ G Sbjct: 55 KYYRGIDKPTDVLSFPLAEFEDTYGEVEEIEEDSEEVQPIGDIVISLEKALEQSMEYGHS 114 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 FE + +L H LHLLGYDH +++ +M E ++ L I Sbjct: 115 FEREVAYLTAHSMLHLLGYDHETEEERKIMREKEEEVMARLNI 157 >gi|113969346|ref|YP_733139.1| putative metalloprotease [Shewanella sp. MR-4] gi|122944050|sp|Q0HLI5|RRMF_SHESM RecName: Full=Probable rRNA maturation factor gi|113884030|gb|ABI38082.1| protein of unknown function UPF0054 [Shewanella sp. MR-4] Length = 153 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 84/159 (52%), Gaps = 10/159 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDL + V+ A D + + A+ N EL++ DS + L Sbjct: 3 LDLALDVQYATASDYLPSEEQFALWVKTAIGN--------SMEQAELTIRIVDSRESQML 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP + +LGD+V+ ++E EA K E H H++ Sbjct: 55 NSTYRGKDKPTNVLSFPFE--APPEIELPLLGDLVICATVVENEAREQDKTLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D++A ME LE ++E LG DPY+ Sbjct: 113 VHGCLHLLGYDHIEDEEAEEMESLETQLIESLGFTDPYK 151 >gi|326389851|ref|ZP_08211415.1| protein of unknown function UPF0054 [Thermoanaerobacter ethanolicus JW 200] gi|325994119|gb|EGD52547.1| protein of unknown function UPF0054 [Thermoanaerobacter ethanolicus JW 200] Length = 159 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 75/163 (46%), Gaps = 17/163 (10%) Query: 13 LQIAVENALWG-DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 + I ++N D I+L L E V + + VE+S+ F D+ I LN Sbjct: 1 MNILIDNRQDKVDAINLEELVEKVIKTVLE------VEEVIDNVEVSVSFVDNEEIRKLN 54 Query: 72 FEYRGIDKPTNVLSFPT----------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 YRGIDKPT+VLSFP D +GDIV++ E ++ G Sbjct: 55 KYYRGIDKPTDVLSFPLAEFEETYGEVEKIEEDSEEVQPIGDIVISLEKALEQSIEYGHS 114 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 FE + +L H LHLLGYDH +++ +M E ++ L I Sbjct: 115 FEREVAYLTAHSMLHLLGYDHETEEERKIMREKEEEVMARLNI 157 >gi|317132157|ref|YP_004091471.1| protein of unknown function UPF0054 [Ethanoligenens harbinense YUAN-3] gi|315470136|gb|ADU26740.1| protein of unknown function UPF0054 [Ethanoligenens harbinense YUAN-3] Length = 164 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 10/164 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 L++ ++N + + + ++ + + ++ F E E+++ F D +I+ LN Sbjct: 3 KLKVYIDNR--QKSVKIPSGLRLLVRRCCNATLANEGF--EGSAEVNVTFVDDAQIKELN 58 Query: 72 FEYRGIDKPTNVLSFPTAFAS----SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 +YR D T+VLSFP + + +LGD+V++ E +A G ++ + Sbjct: 59 AQYRHKDTATDVLSFPMGENGKFDLNPDTGAYVLGDVVISLETATAQAEKYGHSLQHEVA 118 Query: 128 HLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGIN-DPYE 169 L +H LH+LGYDH +A M E I+ LG D YE Sbjct: 119 FLTVHSMLHILGYDHEQGGIEAVRMHEHEDVIMNALGFPRDVYE 162 >gi|282861808|ref|ZP_06270872.1| protein of unknown function UPF0054 [Streptomyces sp. ACTE] gi|282563624|gb|EFB69162.1| protein of unknown function UPF0054 [Streptomyces sp. ACTE] Length = 165 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 17/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAVLDIARYALARMRIHPLS----------ELSVIVVDAAAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-----GCSSLMLGDIVLAYEIIEIEANV--LGKEFE 123 + ++ + PT+V+SFP +LGDIVL E+ + + G + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEVAKRQGEEAPTGHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L L +HG LHLLGYDH + + M GL+ +I Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAI 145 >gi|325290529|ref|YP_004266710.1| metalloprotease ybeY [Syntrophobotulus glycolicus DSM 8271] gi|324965930|gb|ADY56709.1| metalloprotease ybeY [Syntrophobotulus glycolicus DSM 8271] Length = 168 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 24/173 (13%) Query: 11 LDLQIAVENALWG--DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 ++L I E ++ L +A+ E+ ++FTD+ I Sbjct: 1 MELDITWEEPSISPQEKAGWEVLIAQGITRALQEA------EGPENGEIGVLFTDNETIR 54 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSL----------------MLGDIVLAYEIIE 112 LN +YRGID PT+VLSF + + MLGDIV++ + Sbjct: 55 GLNRDYRGIDNPTDVLSFALQEKTEEEPDIYFHHDEDQDDGFPDLGAMLGDIVISVQRAR 114 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G E +V L +HG LHLLGYDH ++ M LE I+E +G+ Sbjct: 115 EQAAEYGHSLEREIVFLAVHGTLHLLGYDHQTEEQRSGMRELEERIMEKIGLA 167 >gi|331698255|ref|YP_004334494.1| metalloprotease ybeY [Pseudonocardia dioxanivorans CB1190] gi|326952944|gb|AEA26641.1| metalloprotease ybeY [Pseudonocardia dioxanivorans CB1190] Length = 178 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 17/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E+ + DE + ++ VEL++ + + L Sbjct: 1 MSIEVANESGIAVDESLIVSVARFALDAM----------GVSPAVELAITAVTTEAMSEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS-------DGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + + PT+V++FP + +LGD+VL +A G Sbjct: 51 HERWMDEPGPTDVMAFPMDELAEETRRPDAPDIGPALLGDVVLCPAFARDQARKAGHGLP 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + L L +HG LHLLGYDH + + M L+ +L + Sbjct: 111 DELHLLTVHGVLHLLGYDHAEPEQEREMFSLQDRLLAE 148 >gi|300780717|ref|ZP_07090571.1| metalloprotease [Corynebacterium genitalium ATCC 33030] gi|300532424|gb|EFK53485.1| metalloprotease [Corynebacterium genitalium ATCC 33030] Length = 195 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ +++ L +V + E+++ DS + L Sbjct: 1 MSIEVLNESG--ETDVNEEMLVDVA-------SFALTALDVHPDTEVTITCVDSPTMADL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG-------CSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + + + PT+V+SFP S MLGDI+L + +A G Sbjct: 52 HMRWMDLPGPTDVMSFPMDELSPGSARPDAAAIGPAMLGDIILCPDYDRKQAEAAGHPLG 111 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + + L +HG LHLLGYDH D M GL+ IL Sbjct: 112 HEMALLTVHGVLHLLGYDHATPADEREMFGLQNEILA 148 >gi|15609504|ref|NP_216883.1| putative metalloprotease [Mycobacterium tuberculosis H37Rv] gi|31793544|ref|NP_856037.1| putative metalloprotease [Mycobacterium bovis AF2122/97] gi|121638246|ref|YP_978470.1| putative metalloprotease [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662199|ref|YP_001283722.1| putative metalloprotease [Mycobacterium tuberculosis H37Ra] gi|148823570|ref|YP_001288324.1| putative metalloprotease [Mycobacterium tuberculosis F11] gi|224990740|ref|YP_002645427.1| hypothetical protein JTY_2375 [Mycobacterium bovis BCG str. Tokyo 172] gi|253798555|ref|YP_003031556.1| hypothetical protein TBMG_01608 [Mycobacterium tuberculosis KZN 1435] gi|289443888|ref|ZP_06433632.1| metalloprotease [Mycobacterium tuberculosis T46] gi|289448009|ref|ZP_06437753.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289553843|ref|ZP_06443053.1| hypothetical protein TBXG_01593 [Mycobacterium tuberculosis KZN 605] gi|289570510|ref|ZP_06450737.1| hypothetical protein TBJG_00877 [Mycobacterium tuberculosis T17] gi|289575061|ref|ZP_06455288.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289746145|ref|ZP_06505523.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289750966|ref|ZP_06510344.1| hypothetical protein TBDG_01176 [Mycobacterium tuberculosis T92] gi|289754472|ref|ZP_06513850.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289758490|ref|ZP_06517868.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289762533|ref|ZP_06521911.1| hypothetical protein TBIG_01770 [Mycobacterium tuberculosis GM 1503] gi|308232114|ref|ZP_07414969.2| hypothetical protein TMAG_02926 [Mycobacterium tuberculosis SUMu001] gi|308369698|ref|ZP_07418742.2| hypothetical protein TMBG_00911 [Mycobacterium tuberculosis SUMu002] gi|308370990|ref|ZP_07423477.2| hypothetical protein TMCG_00467 [Mycobacterium tuberculosis SUMu003] gi|308372215|ref|ZP_07427838.2| hypothetical protein TMDG_00845 [Mycobacterium tuberculosis SUMu004] gi|308373392|ref|ZP_07432143.2| hypothetical protein TMEG_02734 [Mycobacterium tuberculosis SUMu005] gi|308374561|ref|ZP_07436540.2| hypothetical protein TMFG_01331 [Mycobacterium tuberculosis SUMu006] gi|308375864|ref|ZP_07445354.2| hypothetical protein TMGG_00928 [Mycobacterium tuberculosis SUMu007] gi|308376991|ref|ZP_07440782.2| hypothetical protein TMHG_01561 [Mycobacterium tuberculosis SUMu008] gi|308377993|ref|ZP_07481176.2| hypothetical protein TMIG_01044 [Mycobacterium tuberculosis SUMu009] gi|308379183|ref|ZP_07485405.2| hypothetical protein TMJG_00637 [Mycobacterium tuberculosis SUMu010] gi|308380346|ref|ZP_07489619.2| hypothetical protein TMKG_00630 [Mycobacterium tuberculosis SUMu011] gi|308404861|ref|ZP_07494158.2| hypothetical protein TMLG_02116 [Mycobacterium tuberculosis SUMu012] gi|2078032|emb|CAB08472.1| UNKNOWN [Mycobacterium tuberculosis H37Rv] gi|31619137|emb|CAD97249.1| FUNCTION UNKNOWN [Mycobacterium bovis AF2122/97] gi|121493894|emb|CAL72369.1| Function unknown [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148506351|gb|ABQ74160.1| hypothetical protein MRA_2391 [Mycobacterium tuberculosis H37Ra] gi|148722097|gb|ABR06722.1| hypothetical protein TBFG_12393 [Mycobacterium tuberculosis F11] gi|224773853|dbj|BAH26659.1| hypothetical protein JTY_2375 [Mycobacterium bovis BCG str. Tokyo 172] gi|253320058|gb|ACT24661.1| hypothetical protein TBMG_01608 [Mycobacterium tuberculosis KZN 1435] gi|289416807|gb|EFD14047.1| metalloprotease [Mycobacterium tuberculosis T46] gi|289420967|gb|EFD18168.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289438475|gb|EFD20968.1| hypothetical protein TBXG_01593 [Mycobacterium tuberculosis KZN 605] gi|289539492|gb|EFD44070.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289544264|gb|EFD47912.1| hypothetical protein TBJG_00877 [Mycobacterium tuberculosis T17] gi|289686673|gb|EFD54161.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289691553|gb|EFD58982.1| hypothetical protein TBDG_01176 [Mycobacterium tuberculosis T92] gi|289695059|gb|EFD62488.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289710039|gb|EFD74055.1| hypothetical protein TBIG_01770 [Mycobacterium tuberculosis GM 1503] gi|289714054|gb|EFD78066.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|308214951|gb|EFO74350.1| hypothetical protein TMAG_02926 [Mycobacterium tuberculosis SUMu001] gi|308326727|gb|EFP15578.1| hypothetical protein TMBG_00911 [Mycobacterium tuberculosis SUMu002] gi|308330140|gb|EFP18991.1| hypothetical protein TMCG_00467 [Mycobacterium tuberculosis SUMu003] gi|308334001|gb|EFP22852.1| hypothetical protein TMDG_00845 [Mycobacterium tuberculosis SUMu004] gi|308337782|gb|EFP26633.1| hypothetical protein TMEG_02734 [Mycobacterium tuberculosis SUMu005] gi|308341463|gb|EFP30314.1| hypothetical protein TMFG_01331 [Mycobacterium tuberculosis SUMu006] gi|308344949|gb|EFP33800.1| hypothetical protein TMGG_00928 [Mycobacterium tuberculosis SUMu007] gi|308349260|gb|EFP38111.1| hypothetical protein TMHG_01561 [Mycobacterium tuberculosis SUMu008] gi|308353880|gb|EFP42731.1| hypothetical protein TMIG_01044 [Mycobacterium tuberculosis SUMu009] gi|308357825|gb|EFP46676.1| hypothetical protein TMJG_00637 [Mycobacterium tuberculosis SUMu010] gi|308361771|gb|EFP50622.1| hypothetical protein TMKG_00630 [Mycobacterium tuberculosis SUMu011] gi|308365393|gb|EFP54244.1| hypothetical protein TMLG_02116 [Mycobacterium tuberculosis SUMu012] gi|323719034|gb|EGB28182.1| hypothetical protein TMMG_01659 [Mycobacterium tuberculosis CDC1551A] gi|326903983|gb|EGE50916.1| hypothetical protein TBPG_01872 [Mycobacterium tuberculosis W-148] gi|328458323|gb|AEB03746.1| hypothetical protein TBSG_01617 [Mycobacterium tuberculosis KZN 4207] Length = 182 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 16/162 (9%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + + +++A E+ + E L ++ V AK ELS++ D+ Sbjct: 1 MREHLMSIEVANESGIDVSEAELVSVARFVIAKM----------DVNPCAELSMLLLDTA 50 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLG 119 + L+ + + PT+V+SFP MLGDIVL E +A G Sbjct: 51 AMADLHMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPSMLGDIVLCPEFAAEQAAAAG 110 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + L L IHG LHLLGYDH + + M L+ +LE+ Sbjct: 111 HSLGHELALLTIHGVLHLLGYDHAEPDEEKEMFALQDRLLEE 152 >gi|117919455|ref|YP_868647.1| putative metalloprotease [Shewanella sp. ANA-3] gi|145572749|sp|A0KTX2|RRMF_SHESA RecName: Full=Probable rRNA maturation factor gi|117611787|gb|ABK47241.1| protein of unknown function UPF0054 [Shewanella sp. ANA-3] Length = 153 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 59/159 (37%), Positives = 84/159 (52%), Gaps = 10/159 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDL + V+ A D + + A+ N EL++ D+ + L Sbjct: 3 LDLALDVQYATASDYLPSEDQFALWVKTAIGN--------SMEQAELTIRIVDARESQML 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP + +LGD+V+ ++E EA K E H H++ Sbjct: 55 NSTYRGKDKPTNVLSFPFE--APPEIELPLLGDLVICAAVVENEAREQDKTLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D++A ME LE ++E LG DPY+ Sbjct: 113 VHGCLHLLGYDHIEDEEAEEMESLETQLIESLGFTDPYK 151 >gi|307266422|ref|ZP_07547958.1| protein of unknown function UPF0054 [Thermoanaerobacter wiegelii Rt8.B1] gi|306918530|gb|EFN48768.1| protein of unknown function UPF0054 [Thermoanaerobacter wiegelii Rt8.B1] Length = 159 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 53/163 (32%), Positives = 76/163 (46%), Gaps = 17/163 (10%) Query: 13 LQIAVENALWG-DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 + I ++N D I+L L E V + + VE+S+ F D+ I LN Sbjct: 1 MNILIDNRQDKVDAINLEELVEKVIKTVLE------VEEVIDNVEVSVSFVDNEEIRKLN 54 Query: 72 FEYRGIDKPTNVLSFPTAFASS----------DGCSSLMLGDIVLAYEIIEIEANVLGKE 121 YRGIDKPT+VLSFP A D +GDIV++ E ++ G Sbjct: 55 KYYRGIDKPTDVLSFPLAEFEDTYAEVEEIEEDSEEVQPIGDIVISLEKALEQSMEYGHS 114 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 FE + +L H LHLLGYDH +++ +M E ++ L I Sbjct: 115 FEREVAYLTAHSMLHLLGYDHETEEERKIMREKEEEVMARLNI 157 >gi|194017716|ref|ZP_03056326.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061] gi|194010616|gb|EDW20188.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061] Length = 159 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 15/160 (9%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + + E E + FA V + ++ E+S+ + I +N Sbjct: 5 IDLIDETGQVSKEQLEEVEKLLQFAADVLEV--------KDQAEVSVTIVSNEEIHQINK 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCS-------SLMLGDIVLAYEIIEIEANVLGKEFENH 125 EYRG D PT+V+SF +LGDI+++ + + +A G F Sbjct: 57 EYRGKDAPTDVISFALEEEGEGEIEIIGADDIPPVLGDIIISVDRTKEQAEEYGHSFMRE 116 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L IHGFLHLLG+DH+ ++D M + IL+D G++ Sbjct: 117 LGFLTIHGFLHLLGFDHMTEEDEKEMFAKQTKILDDYGLS 156 >gi|134302076|ref|YP_001122045.1| hypothetical protein FTW_1112 [Francisella tularensis subsp. tularensis WY96-3418] gi|166228884|sp|A4IYC3|RRMF_FRATW RecName: Full=Probable rRNA maturation factor gi|134049853|gb|ABO46924.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis WY96-3418] Length = 162 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 12/160 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L++ ++ + + K + + K + + E++L + I+ + Sbjct: 4 LNINFINDDEH-------PIPSQDLLLKCLQLVADKHHI---SHAEVNLNIVSNDEIQQI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N ++R DKPTN++SF D ++ LGDIV+A ++E EA KE +H H Sbjct: 54 NKQFRNKDKPTNIISFKFEKPQGLPDDIANDFLGDIVIAPAVLENEAKEQNKELNDHWQH 113 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 + IHG LHLLGY+H DD++A VME LE +L LGI +PY Sbjct: 114 IFIHGLLHLLGYNHQDDQEAEVMENLEIQLLAQLGIANPY 153 >gi|262203048|ref|YP_003274256.1| hypothetical protein Gbro_3158 [Gordonia bronchialis DSM 43247] gi|262086395|gb|ACY22363.1| protein of unknown function UPF0054 [Gordonia bronchialis DSM 43247] Length = 188 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++ A E+ + E+ + E V+ ++ LS++ D + + Sbjct: 1 MSIEFANESGV---EVPAELIIEAARFAIVAMDVNPAAL-------LSVLCVDEDTMADM 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFEN 124 + ++ + PT+V+SFP G +LGDIVL E +A + F++ Sbjct: 51 HVQWMDLPGPTDVMSFPMDELVPGGRPDAADLGPAILGDIVLCPEFAAQQAKTAKRSFDH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L IHG LHLLG+DH D + M GL+ IL+ Sbjct: 111 ELSMLTIHGVLHLLGFDHADPDEEREMFGLQNEILDAF 148 >gi|88811724|ref|ZP_01126978.1| hypothetical protein NB231_04945 [Nitrococcus mobilis Nb-231] gi|88791115|gb|EAR22228.1| hypothetical protein NB231_04945 [Nitrococcus mobilis Nb-231] Length = 154 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 76/163 (46%), Gaps = 14/163 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + +DLQ+A N + + + E+++ D Sbjct: 1 MLEIDLQLASCNPDVPELEQFERWV------------AAALAGARDAAEIAIRIVDEEEG 48 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN YRG D TN+L+FP +G +++LGD+V+ ++ EA+ K H Sbjct: 49 RELNAIYRGYDYATNILAFPAEL--PEGVEAVLLGDLVICAPLVAREADEQDKRLAAHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HL++HG LHLLGYDH ++ A VME ER IL LG DPY Sbjct: 107 HLVVHGVLHLLGYDHEEEAAAAVMEAQERVILAKLGYPDPYAD 149 >gi|291544276|emb|CBL17385.1| conserved hypothetical protein TIGR00043 [Ruminococcus sp. 18P13] Length = 166 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 9/161 (5%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L++ V+N ++ + ++ + +++ +F + E+S+ F + I Sbjct: 1 MAKLKVYVKNN--QSDVKVPVGIRLLIRRCCQAVLATEHF--DRDAEVSVSFVSNQEIRN 56 Query: 70 LNFEYRGIDKPTNVLSFPTAFAS----SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YR D T+VLSFP + ++LGD+V++ E +A+ G E Sbjct: 57 LNKIYRNKDSVTDVLSFPLLSDGKADVNQETGYVLLGDVVISLETAFKQAHNFGHSLERE 116 Query: 126 LVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGIN 165 + L +H LHLLGYDH D M E ++LE LGI Sbjct: 117 VGFLTVHSMLHLLGYDHETSPLDERKMREKEEAVLEKLGIA 157 >gi|94498013|ref|ZP_01304577.1| predicted metal-dependent hydrolase [Sphingomonas sp. SKA58] gi|94422596|gb|EAT07633.1| predicted metal-dependent hydrolase [Sphingomonas sp. SKA58] Length = 169 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 83/167 (49%), Gaps = 8/167 (4%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D+ + E W D ++L + A+++ G+ E+++ T + Sbjct: 1 MIDVALLHETG-WPD-ADWQSLADRAVTAAIAHSPYAGFAAAPTHYEIAVKLTSDEEVHG 58 Query: 70 LNFEYRGIDKPTNVLSFPTAFAS------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 LN YR DKPTNVLSFP + ++LGDIVLA + EA G Sbjct: 59 LNRAYRDKDKPTNVLSFPMVQDDLLQATANTDDGEVLLGDIVLAEGVCAAEAADKGISIL 118 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +H HLI+HG HLLGYDH+DD +A ME LE + L LG+ DPY Sbjct: 119 DHATHLIVHGTFHLLGYDHMDDAEAEAMEALEIAALASLGLADPYGD 165 >gi|300788461|ref|YP_003768752.1| metalloprotease [Amycolatopsis mediterranei U32] gi|299797975|gb|ADJ48350.1| putative metalloprotease [Amycolatopsis mediterranei U32] Length = 190 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ + DE + + K + ELS++ +E L Sbjct: 1 MSIEIANESGVDVDETSIVSAARYALDKM----------EVSPLAELSILLVTLEVMEDL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V++FP S S +LGDIVL + +A G + Sbjct: 51 HERWMDLPGPTDVMAFPMDELDSSRRPDAPDASPALLGDIVLCPAFAKDQAKTAGHALID 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L L +HG LHLLGYDH + + M L++ IL + Sbjct: 111 ELHLLTVHGVLHLLGYDHAEPAEEREMFALQKRILGE 147 >gi|118602172|ref|YP_903387.1| hypothetical protein Rmag_0121 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|145572752|sp|A1AVF9|RRMF_RUTMC RecName: Full=Probable rRNA maturation factor gi|118567111|gb|ABL01916.1| protein of unknown function UPF0054 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 145 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 56/143 (39%), Positives = 78/143 (54%), Gaps = 5/143 (3%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 IH ++ E + + +I + + EL + + I+ LN YR DK TNVLS Sbjct: 8 IHDSSINEYDLSNTLQEVIKE---LDRGESELLIRLVNETEIKNLNKVYRHQDKLTNVLS 64 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + +LGD+V+ +++ E+ K F NHL H+ IHG LHLLGYDH+D Sbjct: 65 FQSDL--PIEIDEAVLGDVVICTQVVLKESIEQHKSFNNHLTHMAIHGMLHLLGYDHIDT 122 Query: 146 KDACVMEGLERSILEDLGINDPY 168 KDA ME LE IL +GIN+PY Sbjct: 123 KDAQQMENLEIKILAKIGINNPY 145 >gi|256832769|ref|YP_003161496.1| hypothetical protein Jden_1545 [Jonesia denitrificans DSM 20603] gi|256686300|gb|ACV09193.1| protein of unknown function UPF0054 [Jonesia denitrificans DSM 20603] Length = 151 Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E DE L VF + ELS+VF D I L Sbjct: 1 MSIEVNNETTHQLDEAEFAELARYVFDAM----------HIHPLTELSVVFVDPDTISEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL----MLGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ I PT+VLSFP +LGDIV+ E+ +A G + Sbjct: 51 HEQWMDIPGPTDVLSFPMDELRPGTTERPTEQGILGDIVICPEVAVDQAAQAGHSPIEEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L HG LHLLGYDH + ++ M L+R +L Sbjct: 111 LLLATHGILHLLGYDHAEPEEEREMFSLQRHLL 143 >gi|229086872|ref|ZP_04219032.1| metalloprotease [Bacillus cereus Rock3-44] gi|228696447|gb|EEL49272.1| metalloprotease [Bacillus cereus Rock3-44] Length = 136 Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E+ ELS+ F D+ RI+ +N +YR D+PT+V+SF MLGD++ Sbjct: 16 EDGTELSVTFVDNERIQEINRDYRDKDQPTDVISFAMEDMGEGEMEIVGVEMPRMLGDLI 75 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ D+D M G ++ ILE G+ Sbjct: 76 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTDEDEKEMFGKQKEILEAFGL 134 >gi|302389485|ref|YP_003825306.1| protein of unknown function UPF0054 [Thermosediminibacter oceani DSM 16646] gi|302200113|gb|ADL07683.1| protein of unknown function UPF0054 [Thermosediminibacter oceani DSM 16646] Length = 162 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 51/149 (34%), Positives = 75/149 (50%), Gaps = 8/149 (5%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 + + I + E + K V + + VE+S+VF D+ I LN YRG D Sbjct: 7 SNLQNRITVNEKMEELVKKIVEFALD--FEGVAGEVEVSVVFVDNDYIRELNRSYRGKDM 64 Query: 80 PTNVLSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 PT+VLSF S+D MLGDIV++ E +A+ G FE + +L++HG Sbjct: 65 PTDVLSFSMRETSADEAFDGNEEVERMLGDIVISLEKAREQADAFGHSFEREVGYLVVHG 124 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDL 162 LHLLGYDH +++D +M E +L Sbjct: 125 VLHLLGYDHEEERDKKIMREKEEEVLRAF 153 >gi|21283251|ref|NP_646339.1| hypothetical protein MW1522 [Staphylococcus aureus subsp. aureus MW2] gi|49486405|ref|YP_043626.1| hypothetical protein SAS1508 [Staphylococcus aureus subsp. aureus MSSA476] gi|253733180|ref|ZP_04867345.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus TCH130] gi|300911792|ref|ZP_07129235.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus TCH70] gi|26006922|sp|Q8NWB4|RRMF_STAAW RecName: Full=Probable rRNA maturation factor gi|56749708|sp|Q6G8Z7|RRMF_STAAS RecName: Full=Probable rRNA maturation factor gi|21204691|dbj|BAB95387.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49244848|emb|CAG43309.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|253728720|gb|EES97449.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus TCH130] gi|300886038|gb|EFK81240.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus TCH70] Length = 155 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 7/141 (4%) Query: 31 LCEVVFAKAVSNL--ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L + + K + +L +K E+ ELS+ F D I+ +N YR DK T+V+SF Sbjct: 12 LVKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFAL 71 Query: 89 AFASSDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 + +LGDI++ ++ + +AN G FE L L +HGFLHLLGYDH+ Sbjct: 72 EEDEPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHM 131 Query: 144 DDKDACVMEGLERSILEDLGI 164 + D M G + +IL G+ Sbjct: 132 TEADEKEMFGRQDTILNAYGL 152 >gi|288555741|ref|YP_003427676.1| putative metalloprotease [Bacillus pseudofirmus OF4] gi|288546901|gb|ADC50784.1| putative metalloprotease [Bacillus pseudofirmus OF4] Length = 156 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 54/160 (33%), Positives = 78/160 (48%), Gaps = 14/160 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L + + E E E + K +++ Y + VELS+ F D RI+ + Sbjct: 3 LTIDLHDETGTLNSE------QENIVTKLITSA--AEYERLDGEVELSITFVDEKRIQEI 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM------LGDIVLAYEIIEIEANVLGKEFEN 124 N EYRG D PT+V+SF D +M LGDI+++ I +A G FE Sbjct: 55 NAEYRGKDIPTDVISFALNDEVEDEADMIMAGMPNALGDIIISVAHISRQAEEYGHSFER 114 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L++HGFLHLLGYDH+ ++D M + IL G+ Sbjct: 115 ELGFLVVHGFLHLLGYDHMTEQDEKAMFSRQEEILSAYGL 154 >gi|254392584|ref|ZP_05007761.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294812551|ref|ZP_06771194.1| Putative metalloprotease [Streptomyces clavuligerus ATCC 27064] gi|326440996|ref|ZP_08215730.1| metal-binding heat shock protein [Streptomyces clavuligerus ATCC 27064] gi|197706248|gb|EDY52060.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294325150|gb|EFG06793.1| Putative metalloprotease [Streptomyces clavuligerus ATCC 27064] Length = 165 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 17/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDERAILDIARYALARMRIHPLS----------ELSVIVVDAEAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-----GCSSLMLGDIVLAYEIIEIEANV--LGKEFE 123 + ++ + PT+V+SFP +LGDIVL E+ + G + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEVATRQGAEAPTGHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L L +HG LHLLGYDH + + M GL+ +I Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAI 145 >gi|302333246|gb|ADL23439.1| putative metalloprotease [Staphylococcus aureus subsp. aureus JKD6159] Length = 155 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 7/141 (4%) Query: 31 LCEVVFAKAVSNL--ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L + + K + +L +K E+ ELS+ F D I+ +N YR DK T+V+SF Sbjct: 12 LVKDAWYKQIKDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFAL 71 Query: 89 AFASSDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 D +LGDI++ ++ + +AN G FE L L +HGFLHLLGYDH+ Sbjct: 72 EEDEPDIDFSGFDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHM 131 Query: 144 DDKDACVMEGLERSILEDLGI 164 + D M G + +IL G+ Sbjct: 132 TEADEKEMFGRQDTILNAYGL 152 >gi|313903999|ref|ZP_07837379.1| protein of unknown function UPF0054 [Eubacterium cellulosolvens 6] gi|313471148|gb|EFR66470.1| protein of unknown function UPF0054 [Eubacterium cellulosolvens 6] Length = 181 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 25/172 (14%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E E+ + E + V+ ++ + E+S+ F D I + Sbjct: 1 MTINLENEQ-----ELEIPFDYEETAGQIVTKILDEEK--CPYEAEVSITFVDDEEIRRV 53 Query: 71 NFEYRGIDKPTNVLSFP------------------TAFASSDGCSSLMLGDIVLAYEIIE 112 N E+RGIDK T+VLSFP A + L LGDI+++ Sbjct: 54 NREFRGIDKVTDVLSFPVTQFTPPADFSILEDDEAAADSFDPESGELQLGDILISVSRAM 113 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G + + LI H LHL+GYDH+ +++A VME + LEDLGI Sbjct: 114 KQAEEYGHSLKREIGFLIAHSVLHLMGYDHMTEEEATVMEKKQARYLEDLGI 165 >gi|157693031|ref|YP_001487493.1| putative metalloprotease [Bacillus pumilus SAFR-032] gi|166987419|sp|A8FFB6|RRMF_BACP2 RecName: Full=Probable rRNA maturation factor gi|157681789|gb|ABV62933.1| possible metal-dependent hydrolase [Bacillus pumilus SAFR-032] Length = 159 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 15/160 (9%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + + E E E + + ++ E+S+ + I +N Sbjct: 5 IDLIDETGQVSKEQ--LEEVEKLLQ------FAADALEVKDQAEVSVTIVSNEEIHQINK 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCS-------SLMLGDIVLAYEIIEIEANVLGKEFENH 125 EYRG D PT+V+SF +LGDI+++ + + +A G F Sbjct: 57 EYRGKDAPTDVISFALEEEGEGEIEIIGADDIPPVLGDIIISVDRTKEQAEEYGHSFMRE 116 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L IHGFLHLLG+DH+ ++D M + IL+D G++ Sbjct: 117 LGFLTIHGFLHLLGFDHMTEEDEKEMFAKQTKILDDYGLS 156 >gi|303228961|ref|ZP_07315771.1| translation metalloprotein YbeY [Veillonella atypica ACS-134-V-Col7a] gi|302516375|gb|EFL58307.1| translation metalloprotein YbeY [Veillonella atypica ACS-134-V-Col7a] Length = 158 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 14/165 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +QI+ ++ + D T E V K + + ELS++ D+ +I L Sbjct: 1 MHIQISYDDGIARD-----TKIEEVIQKVCDEVSRVYGLEDD---ELSILLCDNKKIHEL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 N EYRGID+PT+VLSF +LGD++L+ E +A G FE L Sbjct: 53 NKEYRGIDRPTDVLSFALNEGDDYEGSEEEHHLLGDMILSLERAHEQAVEYGHSFERELA 112 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI---NDPYE 169 +L H LH+LGYDH+ D+D M E +L +LG + PY Sbjct: 113 YLTTHSCLHILGYDHMTDEDKKEMRTEEEFVLSNLGYVREDQPYN 157 >gi|269469147|gb|EEZ80692.1| hypothetical protein Sup05_0085 [uncultured SUP05 cluster bacterium] Length = 146 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 56/120 (46%), Positives = 73/120 (60%), Gaps = 2/120 (1%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYE 109 + + EL + I+ LN YR D+PTNVLSFP+ ++LGDIV+ Sbjct: 29 LGKGKSELLIRIVGKVEIQNLNKTYRDKDQPTNVLSFPSDL--PIEIDEMILGDIVICTS 86 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 I+ EA + K FE+HL+H+ IHG LHLLGYDHV+ DA ME LE ILE + IN+PYE Sbjct: 87 IVANEAKLQNKTFEHHLIHMAIHGTLHLLGYDHVEPMDAQKMESLEIKILEKMQINNPYE 146 >gi|50955089|ref|YP_062377.1| putative metalloprotease [Leifsonia xyli subsp. xyli str. CTCB07] gi|59799105|sp|Q6AEC4|RRMF_LEIXX RecName: Full=Probable rRNA maturation factor gi|50951571|gb|AAT89272.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 153 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+A+ DE L+ L F EL+++ D +E L Sbjct: 1 MSIEVNNESAIAADEAKLQRLAGYTFD----------IMHVHPDAELAILLVDEAAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM----LGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ PT+VLSFP LGD+VL ++ +++A G + L Sbjct: 51 HVQWMDEPGPTDVLSFPMDELRPGTEDEPSPAGLLGDVVLCPQVAQVQAETTGHTLMDEL 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L+ HG LHLLG+DH + + M G++R IL Sbjct: 111 LLLMTHGILHLLGFDHAEPAEEREMFGIQRDIL 143 >gi|49483818|ref|YP_041042.1| hypothetical protein SAR1647 [Staphylococcus aureus subsp. aureus MRSA252] gi|82751173|ref|YP_416914.1| hypothetical protein SAB1442c [Staphylococcus aureus RF122] gi|257425695|ref|ZP_05602119.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428356|ref|ZP_05604754.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430993|ref|ZP_05607373.1| metalloprotease [Staphylococcus aureus subsp. aureus 68-397] gi|257433681|ref|ZP_05610039.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257436595|ref|ZP_05612639.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|258423998|ref|ZP_05686880.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|282904152|ref|ZP_06312040.1| putative metalloprotease [Staphylococcus aureus subsp. aureus C160] gi|282905979|ref|ZP_06313834.1| metalloprotease [Staphylococcus aureus subsp. aureus Btn1260] gi|282908889|ref|ZP_06316707.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911208|ref|ZP_06319010.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282914377|ref|ZP_06322163.1| putative metalloprotease [Staphylococcus aureus subsp. aureus M899] gi|282916840|ref|ZP_06324598.1| metalloprotease [Staphylococcus aureus subsp. aureus D139] gi|282919346|ref|ZP_06327081.1| metalloprotease [Staphylococcus aureus subsp. aureus C427] gi|282924671|ref|ZP_06332339.1| metalloprotease [Staphylococcus aureus subsp. aureus C101] gi|283770646|ref|ZP_06343538.1| metalloprotease [Staphylococcus aureus subsp. aureus H19] gi|283958334|ref|ZP_06375785.1| putative metalloprotease [Staphylococcus aureus subsp. aureus A017934/97] gi|293503451|ref|ZP_06667298.1| metalloprotease [Staphylococcus aureus subsp. aureus 58-424] gi|293510468|ref|ZP_06669174.1| metalloprotease [Staphylococcus aureus subsp. aureus M809] gi|293531008|ref|ZP_06671690.1| putative metalloprotease [Staphylococcus aureus subsp. aureus M1015] gi|295428148|ref|ZP_06820780.1| metalloprotease [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590886|ref|ZP_06949524.1| hypothetical metal-binding protein [Staphylococcus aureus subsp. aureus MN8] gi|56749737|sp|Q6GGD0|RRMF_STAAR RecName: Full=Probable rRNA maturation factor gi|123547820|sp|Q2YT09|RRMF_STAAB RecName: Full=Probable rRNA maturation factor gi|49241947|emb|CAG40642.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|82656704|emb|CAI81131.1| conserved hypothetical UPF0054 protein [Staphylococcus aureus RF122] gi|257271389|gb|EEV03535.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275197|gb|EEV06684.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278423|gb|EEV09059.1| metalloprotease [Staphylococcus aureus subsp. aureus 68-397] gi|257281774|gb|EEV11911.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257283946|gb|EEV14069.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|257845619|gb|EEV69651.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|282313506|gb|EFB43901.1| metalloprotease [Staphylococcus aureus subsp. aureus C101] gi|282317156|gb|EFB47530.1| metalloprotease [Staphylococcus aureus subsp. aureus C427] gi|282319327|gb|EFB49679.1| metalloprotease [Staphylococcus aureus subsp. aureus D139] gi|282321558|gb|EFB51883.1| putative metalloprotease [Staphylococcus aureus subsp. aureus M899] gi|282324903|gb|EFB55213.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282327153|gb|EFB57448.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331271|gb|EFB60785.1| metalloprotease [Staphylococcus aureus subsp. aureus Btn1260] gi|282595770|gb|EFC00734.1| putative metalloprotease [Staphylococcus aureus subsp. aureus C160] gi|283460793|gb|EFC07883.1| metalloprotease [Staphylococcus aureus subsp. aureus H19] gi|283470848|emb|CAQ50059.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ST398] gi|283790483|gb|EFC29300.1| putative metalloprotease [Staphylococcus aureus subsp. aureus A017934/97] gi|290920276|gb|EFD97342.1| putative metalloprotease [Staphylococcus aureus subsp. aureus M1015] gi|291095117|gb|EFE25382.1| metalloprotease [Staphylococcus aureus subsp. aureus 58-424] gi|291466832|gb|EFF09352.1| metalloprotease [Staphylococcus aureus subsp. aureus M809] gi|295128506|gb|EFG58140.1| metalloprotease [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575772|gb|EFH94488.1| hypothetical metal-binding protein [Staphylococcus aureus subsp. aureus MN8] gi|298694852|gb|ADI98074.1| conserved hypothetical UPF0054 protein [Staphylococcus aureus subsp. aureus ED133] gi|312437961|gb|ADQ77032.1| hypothetical metal-binding protein [Staphylococcus aureus subsp. aureus TCH60] gi|315195473|gb|EFU25860.1| hypothetical protein CGSSa00_07380 [Staphylococcus aureus subsp. aureus CGS00] Length = 155 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 7/141 (4%) Query: 31 LCEVVFAKAVSNL--ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L + + K + +L +K E+ ELS+ F D I+ +N YR DK T+V+SF Sbjct: 12 LVKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFAL 71 Query: 89 AFASSDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 D +LGDI++ ++ + +AN G FE L L +HGFLHLLGYDH+ Sbjct: 72 EEDEPDIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHM 131 Query: 144 DDKDACVMEGLERSILEDLGI 164 + D M G + +IL G+ Sbjct: 132 TEADEKEMFGRQDTILNAYGL 152 >gi|297207711|ref|ZP_06924146.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|296887728|gb|EFH26626.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 155 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 7/141 (4%) Query: 31 LCEVVFAKAVSNL--ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L + + K + +L +K E+ ELS+ F D I+ +N YR DK T+V+SF Sbjct: 12 LVKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFAL 71 Query: 89 AFASSDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 + +LGDI++ ++ + +AN G FE L L +HGFLHLLGYDH+ Sbjct: 72 EEDVPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHM 131 Query: 144 DDKDACVMEGLERSILEDLGI 164 + D M G + +IL G+ Sbjct: 132 TEADEKEMFGRQDTILNAYGL 152 >gi|15827258|ref|NP_301521.1| metalloprotease [Mycobacterium leprae TN] gi|221229736|ref|YP_002503152.1| putative metalloprotease [Mycobacterium leprae Br4923] gi|2851628|sp|Q49752|RRMF_MYCLE RecName: Full=Probable rRNA maturation factor gi|254806550|sp|B8ZUT0|RRMF_MYCLB RecName: Full=Probable rRNA maturation factor gi|13092807|emb|CAC30136.1| conserved hypothetical protein [Mycobacterium leprae] gi|219932843|emb|CAR70721.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length = 178 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ E+ L ++ V K ELS+V D+ + L Sbjct: 1 MSVEVSNESGFDVSEVELVSVARFVIIKM----------DVNPAAELSMVLLDTAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP G MLGDIVL E +A G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDEFEPGGRPDAAEPGPSMLGDIVLCPEFAAQQAAAEGHSLGH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L L IHG LHLLGYDH + + M L+ +LE+ Sbjct: 111 ELALLTIHGVLHLLGYDHGEPDEEKEMFALQGRLLEE 147 >gi|89100467|ref|ZP_01173329.1| hypothetical protein B14911_05536 [Bacillus sp. NRRL B-14911] gi|89084810|gb|EAR63949.1| hypothetical protein B14911_05536 [Bacillus sp. NRRL B-14911] Length = 156 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 12/160 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L I + + E + + E ELS+ F + RI+ + Sbjct: 1 MSLNIDFLDETNEVKSSHIEQVEKLLN------FAAEKENVEAGSELSVTFVTNDRIQEI 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFEN 124 N EYR DKPT+V+SF +LGDI+++ + E +A G FE Sbjct: 55 NREYRDKDKPTDVISFAMEELGEGETEIAGEGIPRVLGDIIISIQRTEEQAGEYGHSFER 114 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L +HGFLHLLGYDH D++ M G ++ IL++ G+ Sbjct: 115 ELGFLAVHGFLHLLGYDHETDEEEREMFGRQKDILDEYGL 154 >gi|154686792|ref|YP_001421953.1| putative metalloprotease [Bacillus amyloliquefaciens FZB42] gi|189039682|sp|A7Z6U6|RRMF_BACA2 RecName: Full=Probable rRNA maturation factor gi|154352643|gb|ABS74722.1| YqfG [Bacillus amyloliquefaciens FZB42] Length = 157 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 12/160 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L I + + E + + ++ E+S+ + I + Sbjct: 1 MSLLIDIVDETNSVSADALQEVEKLLQ------FAAEKEGVQDQAEVSVTIVTNEEIREI 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 N +YRG D PT+V+SF D +LGDI+++ + + +A G F Sbjct: 55 NRDYRGKDTPTDVISFALEEEGEDEVEIVGADMPPVLGDIIISADRTKEQAEEYGHSFMR 114 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L +HGFLHLLGYDH+ ++ M ++ +L++ G+ Sbjct: 115 ELGFLAVHGFLHLLGYDHMTKEEEEEMFSKQKDLLDEYGL 154 >gi|257065846|ref|YP_003152102.1| hypothetical protein Apre_0330 [Anaerococcus prevotii DSM 20548] gi|256797726|gb|ACV28381.1| protein of unknown function UPF0054 [Anaerococcus prevotii DSM 20548] Length = 446 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 2/127 (1%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 + V ++ E+S+ F D I LN E+R +D+PT+VLSFP Sbjct: 19 LERTVKEVLKTEGLG--EDYEVSITFVDREEIHRLNREFRDVDRPTDVLSFPLDDTIDLP 76 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 + MLGDIV+ ++ + +A G +++L H LHLLGYDH+++ + M E Sbjct: 77 DADKMLGDIVICLDVAKDQAMEFGHSLRREIMYLTCHSTLHLLGYDHMEEDEKREMRRRE 136 Query: 156 RSILEDL 162 + ++ +L Sbjct: 137 KEVMRNL 143 >gi|238758021|ref|ZP_04619202.1| metalloprotease [Yersinia aldovae ATCC 35236] gi|238703775|gb|EEP96311.1| metalloprotease [Yersinia aldovae ATCC 35236] Length = 112 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 2/110 (1%) Query: 62 TDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 D LN YRG DK TNVLSFP + +LGD+++ +++E EA K Sbjct: 1 MDDAESHELNLTYRGKDKSTNVLSFPFE--APPEIELPLLGDLIICRQVVEQEAIEQEKA 58 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH+ D +A ME +E I++ LG DPY + Sbjct: 59 LLAHWAHMVVHGSLHLLGYDHIVDDEAEEMESIETEIMQSLGYPDPYISE 108 >gi|167035831|ref|YP_001671062.1| putative metalloprotease [Pseudomonas putida GB-1] gi|189040216|sp|B0KJW3|RRMF_PSEPG RecName: Full=Probable rRNA maturation factor gi|166862319|gb|ABZ00727.1| protein of unknown function UPF0054 [Pseudomonas putida GB-1] Length = 157 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 57/162 (35%), Positives = 79/162 (48%), Gaps = 12/162 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L+L I + F + + + + E+++ D Sbjct: 1 MLELDI-------QRATDAAAPDDAAFRRWCELALRQ----RTADSEMTIRLVDEAEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D TNVLSFP D +LGD+V+ ++E EA GK E H HL Sbjct: 50 LNHTYRHKDYATNVLSFPAD-VPDDLLDIPLLGDLVICVAVVEREAAEQGKSLEAHWAHL 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D++A MEGLER +L +LG DPY D Sbjct: 109 VMHGCLHLLGYDHIEDEEAEEMEGLERELLAELGHPDPYADD 150 >gi|261253664|ref|ZP_05946237.1| predicted metal-dependent hydrolase [Vibrio orientalis CIP 102891] gi|260937055|gb|EEX93044.1| predicted metal-dependent hydrolase [Vibrio orientalis CIP 102891] Length = 110 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 48/110 (43%), Positives = 67/110 (60%), Gaps = 2/110 (1%) Query: 62 TDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 D LN +YRG DKPTNVLSFP + G +LGD+++ +++E EA K Sbjct: 1 MDEKESHQLNHDYRGKDKPTNVLSFPFE--APPGIEIDLLGDLIICRQVVEREAIEQNKP 58 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I++ +G NDPY + Sbjct: 59 LMAHWAHMVVHGSLHLLGYDHIEDDEAEKMESLETEIMQRMGFNDPYIDE 108 >gi|261366880|ref|ZP_05979763.1| putative metalloprotease [Subdoligranulum variabile DSM 15176] gi|282570994|gb|EFB76529.1| putative metalloprotease [Subdoligranulum variabile DSM 15176] Length = 166 Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 7/145 (4%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + ++ ++ + ++ F E E+S+ F D+HRI LN +YR D T+VLS Sbjct: 14 VKIPSGLRILIRRSCNAVLDFEKF--EGSAEISVTFVDNHRIHELNKQYRDKDSATDVLS 71 Query: 86 FPT----AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 FP + + +LGDIV++ E +A + G + + +L +H LHLLGYD Sbjct: 72 FPMGENGEYDIDEDNGCKILGDIVISMERAMEQAELYGHSLQREVAYLTVHSMLHLLGYD 131 Query: 142 HVDDK-DACVMEGLERSILEDLGIN 165 H +A M E ++L LG+ Sbjct: 132 HEASGLEAVRMREKEEAVLIKLGLP 156 >gi|297584645|ref|YP_003700425.1| hypothetical protein Bsel_2356 [Bacillus selenitireducens MLS10] gi|297143102|gb|ADH99859.1| protein of unknown function UPF0054 [Bacillus selenitireducens MLS10] Length = 156 Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 68/156 (43%), Gaps = 11/156 (7%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++ I E D L V A+ E+S+ RI+ LN Sbjct: 7 EIDILDETEKLHD--DALQLIRDVLFSAMKA------EDIPMGTEVSVSIVTDGRIQELN 58 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSL---MLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +YR D+PT+VLSF + MLGDI+++ + +++ G FE L Sbjct: 59 RDYREKDRPTDVLSFALHDGEEQIIAPTIPDMLGDIIISLPAVYRQSDEYGHSFERELAF 118 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L +HGFLHL GYDH ++ D M + +L GI Sbjct: 119 LTVHGFLHLCGYDHENEADEQKMFARQEELLTAYGI 154 >gi|297544406|ref|YP_003676708.1| hypothetical protein Tmath_0963 [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842181|gb|ADH60697.1| protein of unknown function UPF0054 [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 159 Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 17/163 (10%) Query: 13 LQIAVENALWG-DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 + I ++N D +L L E V + + VE+S+ F D+ + LN Sbjct: 1 MNILIDNRQSKVDAANLEELIEKVIKTVLE------VEEVIDNVEVSVSFVDNEEMRKLN 54 Query: 72 FEYRGIDKPTNVLSFP----------TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 YRGIDKPT+VLSFP + +GDIV++ E ++ G Sbjct: 55 KYYRGIDKPTDVLSFPLAEFEETYDKIEKIDQESEEVQPIGDIVISLEKALEQSMEYGHS 114 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 FE + +L H LHLLGYDH +++ +M E I+ L I Sbjct: 115 FEREVAYLTAHSMLHLLGYDHQTEEERKIMRQKEEEIMARLNI 157 >gi|86739975|ref|YP_480375.1| putative metalloprotease [Frankia sp. CcI3] gi|123765131|sp|Q2JDJ6|RRMF_FRASC RecName: Full=Probable rRNA maturation factor gi|86566837|gb|ABD10646.1| protein of unknown function UPF0054 [Frankia sp. CcI3] Length = 201 Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 18/159 (11%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + +A E+ DE+ L L V + ELS++ + + Sbjct: 1 MAVFVANESGASDVDEVRLAALARFVLDAM----------KVNPLAELSVMLVEPKAMTD 50 Query: 70 LNFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 L+ Y G + PT+VLSFP S D + +LGD+VL ++ +A G F Sbjct: 51 LHVRYMGEEGPTDVLSFPQDDAFDASWSESVDDDPTTLLGDVVLCPDVARRQAEQAGHSF 110 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + L L HG LHLLGYDH + + M ++ +L Sbjct: 111 DRELSLLCTHGILHLLGYDHAEPDEEREMWKVQSQLLAS 149 >gi|83589459|ref|YP_429468.1| hypothetical protein Moth_0595 [Moorella thermoacetica ATCC 39073] gi|123524940|sp|Q2RKW4|RRMF_MOOTA RecName: Full=Probable rRNA maturation factor gi|83572373|gb|ABC18925.1| Protein of unknown function UPF0054 [Moorella thermoacetica ATCC 39073] Length = 156 Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 6/113 (5%) Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIVLAYEII 111 SL D I+ LN YRG+D PT+VLSF D +LGDI+++ Sbjct: 42 SLTLVDDAAIKELNRTYRGVDAPTDVLSFALEEKGPDEPAYADPGGDKLLGDIIISVPTA 101 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G L L +HGFLHLLGYDH A ME + +IL +G+ Sbjct: 102 VRQAGEYGHSLARELAFLAVHGFLHLLGYDHDTAAGAADMEARQEAILAGVGL 154 >gi|227548791|ref|ZP_03978840.1| metalloprotease [Corynebacterium lipophiloflavum DSM 44291] gi|227079121|gb|EEI17084.1| metalloprotease [Corynebacterium lipophiloflavum DSM 44291] Length = 187 Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 18/158 (11%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + +++ E+ +E L + A + E+++ D + Sbjct: 1 MSIEVLNESGEGDVNEEMLVDVSSFALAAMDVH----------PDTEVTVTLVDEPTMAD 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDG-------CSSLMLGDIVLAYEIIEIEANVLGKEF 122 L+ + ++ PT+V+SFP + G MLGDI+L +A + G + Sbjct: 51 LHVRWMDLEGPTDVMSFPMDELTPGGGRPDAAQPGPAMLGDIILCPAFDRRQAEIAGHDL 110 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + L L +HG LHLLGYDHV +D M L+ IL Sbjct: 111 GHELALLTVHGVLHLLGYDHVAPEDEREMFSLQNEILA 148 >gi|303231491|ref|ZP_07318221.1| translation metalloprotein YbeY [Veillonella atypica ACS-049-V-Sch6] gi|302513834|gb|EFL55846.1| translation metalloprotein YbeY [Veillonella atypica ACS-049-V-Sch6] Length = 158 Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 14/165 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +QI+ ++ I E V K + + ELS++ D+ +I L Sbjct: 1 MHIQISYDDG-----IAKDANIEEVIQKVCDEVSRVYGLEND---ELSILLCDNKKIHEL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 N EYRGID+PT+VLSF +LGD++L+ E +A G FE L Sbjct: 53 NKEYRGIDRPTDVLSFALNEGDDYEGSEEEHHLLGDMILSLERAHEQAVEYGHSFERELA 112 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI---NDPYE 169 +L H LH+LGYDH+ D+D M E +L +LG + PY Sbjct: 113 YLTTHSCLHILGYDHMTDEDKKEMRTEEEFVLSNLGYVREDQPYN 157 >gi|226311650|ref|YP_002771544.1| hypothetical protein BBR47_20630 [Brevibacillus brevis NBRC 100599] gi|254801535|sp|C0ZB81|RRMF_BREBN RecName: Full=Probable rRNA maturation factor gi|226094598|dbj|BAH43040.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 159 Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 20/166 (12%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L ++I E + + + ++E E+ + ++ RI Sbjct: 1 MLSVEILHEE---------IEPIDENLQNLLVRCLEAAAKLEEVQGEVVVTLVNNERIHE 51 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCS-----------SLMLGDIVLAYEIIEIEANVL 118 LN +YRG+D+PT+VLSF MLGDI+++ +A Sbjct: 52 LNRDYRGVDRPTDVLSFAMNEPGEGEMEIFIDEDEASEFPNMLGDIIISVPKAHEQAEDY 111 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G FE L L +HGFLHLLGYDH ++ M + +LE++G+ Sbjct: 112 GHSFERELGFLTVHGFLHLLGYDHGTPEEEKEMFSRQEKVLEEIGL 157 >gi|15924560|ref|NP_372094.1| hypothetical protein SAV1570 [Staphylococcus aureus subsp. aureus Mu50] gi|15927150|ref|NP_374683.1| hypothetical protein SA1399 [Staphylococcus aureus subsp. aureus N315] gi|57651963|ref|YP_186467.1| hypothetical protein SACOL1627 [Staphylococcus aureus subsp. aureus COL] gi|87160129|ref|YP_494225.1| hypothetical protein SAUSA300_1530 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195379|ref|YP_500183.1| hypothetical protein SAOUHSC_01672 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268054|ref|YP_001246997.1| hypothetical protein SaurJH9_1628 [Staphylococcus aureus subsp. aureus JH9] gi|150394122|ref|YP_001316797.1| hypothetical protein SaurJH1_1662 [Staphylococcus aureus subsp. aureus JH1] gi|151221685|ref|YP_001332507.1| hypothetical protein NWMN_1473 [Staphylococcus aureus subsp. aureus str. Newman] gi|156979888|ref|YP_001442147.1| hypothetical protein SAHV_1557 [Staphylococcus aureus subsp. aureus Mu3] gi|161509798|ref|YP_001575457.1| hypothetical protein USA300HOU_1571 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140010|ref|ZP_03564503.1| hypothetical protein SauraJ_00070 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316045|ref|ZP_04839258.1| hypothetical protein SauraC_07852 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006356|ref|ZP_05144957.2| hypothetical protein SauraM_07805 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793646|ref|ZP_05642625.1| metalloprotease [Staphylococcus aureus A9781] gi|258411054|ref|ZP_05681334.1| metalloprotease [Staphylococcus aureus A9763] gi|258420142|ref|ZP_05683097.1| metalloprotease [Staphylococcus aureus A9719] gi|258437402|ref|ZP_05689386.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258443608|ref|ZP_05691947.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258446815|ref|ZP_05694969.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|258448729|ref|ZP_05696841.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|258450601|ref|ZP_05698663.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|258453546|ref|ZP_05701524.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|262049144|ref|ZP_06022021.1| hypothetical protein SAD30_0301 [Staphylococcus aureus D30] gi|262051230|ref|ZP_06023454.1| hypothetical protein SA930_1661 [Staphylococcus aureus 930918-3] gi|269203198|ref|YP_003282467.1| hypothetical protein SAAV_1562 [Staphylococcus aureus subsp. aureus ED98] gi|282893071|ref|ZP_06301305.1| metalloprotease [Staphylococcus aureus A8117] gi|282920119|ref|ZP_06327844.1| metalloprotease [Staphylococcus aureus A9765] gi|282928203|ref|ZP_06335808.1| metalloprotease [Staphylococcus aureus A10102] gi|284024629|ref|ZP_06379027.1| hypothetical protein Saura13_08560 [Staphylococcus aureus subsp. aureus 132] gi|294848601|ref|ZP_06789347.1| metalloprotease [Staphylococcus aureus A9754] gi|295406693|ref|ZP_06816498.1| metalloprotease [Staphylococcus aureus A8819] gi|296275808|ref|ZP_06858315.1| hypothetical protein SauraMR_05652 [Staphylococcus aureus subsp. aureus MR1] gi|297245725|ref|ZP_06929590.1| metalloprotease [Staphylococcus aureus A8796] gi|304380841|ref|ZP_07363501.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54040164|sp|P67137|RRMF_STAAN RecName: Full=Probable rRNA maturation factor gi|54042633|sp|P67136|RRMF_STAAM RecName: Full=Probable rRNA maturation factor gi|62901407|sp|Q5HFJ0|RRMF_STAAC RecName: Full=Probable rRNA maturation factor gi|122539405|sp|Q2FY02|RRMF_STAA8 RecName: Full=Probable rRNA maturation factor gi|123485628|sp|Q2FGF3|RRMF_STAA3 RecName: Full=Probable rRNA maturation factor gi|166231407|sp|A7X2W8|RRMF_STAA1 RecName: Full=Probable rRNA maturation factor gi|172048907|sp|A6QHB3|RRMF_STAAE RecName: Full=Probable rRNA maturation factor gi|189038954|sp|A8Z4A9|RRMF_STAAT RecName: Full=Probable rRNA maturation factor gi|189038968|sp|A5IT98|RRMF_STAA9 RecName: Full=Probable rRNA maturation factor gi|189038976|sp|A6U242|RRMF_STAA2 RecName: Full=Probable rRNA maturation factor gi|13701368|dbj|BAB42662.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14247341|dbj|BAB57732.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|57286149|gb|AAW38243.1| conserved hypothetical protein TIGR00043 [Staphylococcus aureus subsp. aureus COL] gi|87126103|gb|ABD20617.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202937|gb|ABD30747.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741123|gb|ABQ49421.1| protein of unknown function UPF0054 [Staphylococcus aureus subsp. aureus JH9] gi|149946574|gb|ABR52510.1| protein of unknown function UPF0054 [Staphylococcus aureus subsp. aureus JH1] gi|150374485|dbj|BAF67745.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156722023|dbj|BAF78440.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368607|gb|ABX29578.1| hypothetical protein USA300HOU_1571 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257787618|gb|EEV25958.1| metalloprotease [Staphylococcus aureus A9781] gi|257840204|gb|EEV64668.1| metalloprotease [Staphylococcus aureus A9763] gi|257843853|gb|EEV68247.1| metalloprotease [Staphylococcus aureus A9719] gi|257848607|gb|EEV72595.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257851014|gb|EEV74957.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257854390|gb|EEV77339.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|257858007|gb|EEV80896.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|257861759|gb|EEV84558.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|257864277|gb|EEV87027.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|259160867|gb|EEW45887.1| hypothetical protein SA930_1661 [Staphylococcus aureus 930918-3] gi|259162813|gb|EEW47378.1| hypothetical protein SAD30_0301 [Staphylococcus aureus D30] gi|262075488|gb|ACY11461.1| hypothetical protein SAAV_1562 [Staphylococcus aureus subsp. aureus ED98] gi|269941060|emb|CBI49444.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282590010|gb|EFB95092.1| metalloprotease [Staphylococcus aureus A10102] gi|282594467|gb|EFB99452.1| metalloprotease [Staphylococcus aureus A9765] gi|282764389|gb|EFC04515.1| metalloprotease [Staphylococcus aureus A8117] gi|285817252|gb|ADC37739.1| predicted metal-dependent hydrolase [Staphylococcus aureus 04-02981] gi|294824627|gb|EFG41050.1| metalloprotease [Staphylococcus aureus A9754] gi|294968440|gb|EFG44464.1| metalloprotease [Staphylococcus aureus A8819] gi|297177376|gb|EFH36628.1| metalloprotease [Staphylococcus aureus A8796] gi|302751400|gb|ADL65577.1| putative metalloprotease [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340568|gb|EFM06502.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829958|emb|CBX34800.1| uncharacterized protein family UPF0054 family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129849|gb|EFT85839.1| hypothetical protein CGSSa03_02148 [Staphylococcus aureus subsp. aureus CGS03] gi|315198734|gb|EFU29062.1| hypothetical protein CGSSa01_09439 [Staphylococcus aureus subsp. aureus CGS01] gi|320140545|gb|EFW32399.1| conserved hypothetical protein TIGR00043 [Staphylococcus aureus subsp. aureus MRSA131] gi|320144082|gb|EFW35851.1| conserved hypothetical protein TIGR00043 [Staphylococcus aureus subsp. aureus MRSA177] gi|329314246|gb|AEB88659.1| Putative metalloprotease [Staphylococcus aureus subsp. aureus T0131] gi|329727414|gb|EGG63870.1| translation metalloprotein YbeY [Staphylococcus aureus subsp. aureus 21172] gi|329728375|gb|EGG64812.1| translation metalloprotein YbeY [Staphylococcus aureus subsp. aureus 21189] Length = 155 Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 7/141 (4%) Query: 31 LCEVVFAKAVSNL--ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L + + K + +L +K E+ ELS+ F D I+ +N YR DK T+V+SF Sbjct: 12 LVKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFAL 71 Query: 89 AFASSDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 + +LGDI++ ++ + +AN G FE L L +HGFLHLLGYDH+ Sbjct: 72 EEDEPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHM 131 Query: 144 DDKDACVMEGLERSILEDLGI 164 + D M G + +IL G+ Sbjct: 132 TEADEKEMFGRQDTILNAYGL 152 >gi|329733127|gb|EGG69464.1| translation metalloprotein YbeY [Staphylococcus aureus subsp. aureus 21193] Length = 155 Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 47/141 (33%), Positives = 73/141 (51%), Gaps = 7/141 (4%) Query: 31 LCEVVFAKAVSNL--ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L + + K + +L +K ++ ELS+ F D I+ +N YR DK T+V+SF Sbjct: 12 LVKDAWYKQIEDLLEFAKKEEHIQDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFAL 71 Query: 89 AFASSDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 + +LGDI++ ++ + +AN G FE L L +HGFLHLLGYDH+ Sbjct: 72 EEDEPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHM 131 Query: 144 DDKDACVMEGLERSILEDLGI 164 + D M G + +IL G+ Sbjct: 132 TEADEKEMFGRQDTILNAYGL 152 >gi|256827192|ref|YP_003151151.1| hypothetical protein Ccur_07650 [Cryptobacterium curtum DSM 15641] gi|256583335|gb|ACU94469.1| conserved hypothetical protein TIGR00043 [Cryptobacterium curtum DSM 15641] Length = 157 Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 72/161 (44%), Gaps = 21/161 (13%) Query: 11 LDLQIAVENALWGDE-IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D+ I + E + L +L + + A K E+S+ F D RI Sbjct: 1 MDITINYDYGRERVEGMPLESLAQFIIAA----------EGKPASTEVSISFVDDDRIAE 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSD----------GCSSLMLGDIVLAYEIIEIEANVLG 119 LN YRG PT+VLSF D G LGDIV+A ++ E + + G Sbjct: 51 LNEAYRGKVGPTDVLSFECDGYDDDFSVNNEADQVGEIPYELGDIVVAVDVAERQTALFG 110 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + L+ HG LHL GYDH+ +++A VME E +L Sbjct: 111 TTLAEEIELLVCHGLLHLCGYDHMVEEEAQVMEAREDELLA 151 >gi|289550659|ref|YP_003471563.1| predicted metal-dependent hydrolase [Staphylococcus lugdunensis HKU09-01] gi|315658154|ref|ZP_07911026.1| putative metal-dependent hydrolase [Staphylococcus lugdunensis M23590] gi|289180191|gb|ADC87436.1| predicted metal-dependent hydrolase [Staphylococcus lugdunensis HKU09-01] gi|315496483|gb|EFU84806.1| putative metal-dependent hydrolase [Staphylococcus lugdunensis M23590] Length = 153 Score = 107 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 4/136 (2%) Query: 33 EVVFAKAVSNL-ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + L +K ELS+ F D I+ +N YR DK T+V+SF Sbjct: 15 EAWFQQIDDLLNFAKEQEGITQDAELSVTFVDKEEIQQINKIYRDKDKVTDVISFALEED 74 Query: 92 SSDGCS---SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + +LGDI++ ++ + +A G FE L L +HGFLHLLGYDH++++D Sbjct: 75 EPEITGLEIPRVLGDIIICTDVAQEQATTYGHSFERELGFLALHGFLHLLGYDHMNEEDE 134 Query: 149 CVMEGLERSILEDLGI 164 M G + +IL G+ Sbjct: 135 KKMFGRQETILTAYGL 150 >gi|289578131|ref|YP_003476758.1| hypothetical protein Thit_0920 [Thermoanaerobacter italicus Ab9] gi|289527844|gb|ADD02196.1| protein of unknown function UPF0054 [Thermoanaerobacter italicus Ab9] Length = 159 Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 15/162 (9%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I ++N E+ E + K + ++ + VE+S+ F D+ I LN Sbjct: 1 MNILIDNRQDKVEVIN---LEELVKKVIKTVLKVEEVIDN--VEVSVSFVDNEEIRKLNK 55 Query: 73 EYRGIDKPTNVLSFP----------TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 YRGIDKPT+VLSFP + +GDIV++ E ++ G F Sbjct: 56 YYRGIDKPTDVLSFPLAEFEETYDKIEKIDQESEEVQPIGDIVISLEKALEQSMEYGHSF 115 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 E + +L H LHLLGYDH +++ +M E I+ L I Sbjct: 116 EREVAYLTAHSMLHLLGYDHQTEEERKIMRQKEEEIMARLNI 157 >gi|213965812|ref|ZP_03394004.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] gi|213951571|gb|EEB62961.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] Length = 177 Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 17/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ +E L + + ELS+ D IE L Sbjct: 1 MSIEVFNESGQGVNEESLIDVARYALGR----------LDVHPAAELSIHIVDLKTIEDL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG-------CSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + + + PT+V+SFP + MLGDIVL E +A G Sbjct: 51 HVRWLDLPGPTDVMSFPMDELTPGSGRPDAASPGPAMLGDIVLCPEFAAGQAERAGHPLS 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + LV L +HG LHLLGYDHV ++ M L+ +L Sbjct: 111 HELVLLTVHGVLHLLGYDHVTAEEERQMFSLQNGLLA 147 >gi|323440468|gb|EGA98180.1| hypothetical protein SAO11_0764 [Staphylococcus aureus O11] gi|323443242|gb|EGB00860.1| hypothetical protein SAO46_0891 [Staphylococcus aureus O46] Length = 155 Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 7/141 (4%) Query: 31 LCEVVFAKAVSNL--ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L + + K + +L +K E+ ELS+ F D I+ +N YR DK T+V+SF Sbjct: 12 LVKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFAL 71 Query: 89 AFASSDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 D +LGDI++ ++ + +AN G FE L L +HGFLHLLGYDH+ Sbjct: 72 EEDEPDIDYSDLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHM 131 Query: 144 DDKDACVMEGLERSILEDLGI 164 + D M G + +IL G+ Sbjct: 132 TEADEKEMFGRQDTILNAYGL 152 >gi|172037802|ref|YP_001804303.1| hypothetical protein cce_2889 [Cyanothece sp. ATCC 51142] gi|171699256|gb|ACB52237.1| hypothetical protein cce_2889 [Cyanothece sp. ATCC 51142] Length = 170 Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 14/167 (8%) Query: 9 PRLDLQI----AVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 P +DL + AV + I +T + F L+S Y + EL+L T Sbjct: 7 PVIDLNVQDAFAVNSNQAQTYISSQTW-KKWFQIWGITLLS--YLPVASTYELTLRLTGD 63 Query: 65 HRIETLNFEYRGIDKPTNVLSF-------PTAFASSDGCSSLMLGDIVLAYEIIEIEANV 117 I +LN +YR ++PT+VL+F P D L +GDI+++ E + +A Sbjct: 64 QEIHSLNAQYRQKNQPTDVLAFATLEWDFPKITDEPDSSEPLYIGDIIISVETAQKQAQQ 123 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G + L L HGFLHLLG+DH D++ M + ++L+ +G+ Sbjct: 124 QGHSLQRELPWLASHGFLHLLGWDHPDEQSLQKMLQQQETLLKIVGL 170 >gi|260222300|emb|CBA31726.1| Putative metalloprotease Rfer_0737 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 147 Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats. Identities = 43/115 (37%), Positives = 59/115 (51%), Gaps = 7/115 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 E+++ D+ +TLN EYR D TNVL+F + D+VL ++ Sbjct: 40 DGEITVRIVDAEEGQTLNREYRQKDYATNVLTFDYTQEP-------VTADLVLCAPVVAK 92 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA K E H H+I+HG LH G+DH D+DA VME E I+ LG +PY Sbjct: 93 EAKEQKKTLEAHYAHMIVHGTLHAQGWDHELDEDAEVMELRESEIMARLGFKNPY 147 >gi|169829170|ref|YP_001699328.1| hypothetical protein Bsph_3714 [Lysinibacillus sphaericus C3-41] gi|238688186|sp|B1HTJ4|RRMF_LYSSC RecName: Full=Probable rRNA maturation factor gi|168993658|gb|ACA41198.1| UPF0054 protein [Lysinibacillus sphaericus C3-41] Length = 157 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIV 105 E E+S+ F + I+ +N EYRG D+PT+V+SF +LGDI+ Sbjct: 36 EPETEVSVTFVTNDTIQDINREYRGKDQPTDVISFALEELGEGEMAVTFEGMPRVLGDII 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + + +A FE L L +HGFLHLLGYDH++ ++ VM + IL+ G+ Sbjct: 96 ISTDRAKEQAEEYNHSFERELGFLAVHGFLHLLGYDHMEPEEEKVMFTKQDEILQTFGL 154 >gi|167630510|ref|YP_001681009.1| hypothetical protein HM1_2448 [Heliobacterium modesticaldum Ice1] gi|238687861|sp|B0TAE8|RRMF_HELMI RecName: Full=Probable rRNA maturation factor gi|167593250|gb|ABZ84998.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1] Length = 166 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 8/157 (5%) Query: 16 AVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYR 75 V+ + + + ++ + E+SLV T+ +I LN EYR Sbjct: 5 IVDEREGVTKAPEMEESWQLMLEQLAFACLEEVGYPLEDTEISLVLTNDEKIRRLNAEYR 64 Query: 76 GIDKPTNVLSFPTAFASSDGCSSLM--------LGDIVLAYEIIEIEANVLGKEFENHLV 127 ID+PT+VLSF D LGDI+++ E E +A G E + Sbjct: 65 NIDQPTDVLSFAMEEGLDDEADFHFDDPTAGKVLGDIIISVETAERQAQEYGHSLEREMG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L +HG LHLLGYDH D++ M LE IL + G+ Sbjct: 125 FLFVHGMLHLLGYDHCDEEQRSRMRALEEKILRNQGL 161 >gi|311741361|ref|ZP_07715185.1| metalloprotease [Corynebacterium pseudogenitalium ATCC 33035] gi|311303531|gb|EFQ79610.1| metalloprotease [Corynebacterium pseudogenitalium ATCC 33035] Length = 205 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 20/161 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++ E+ + E + S G E ++ D IE L Sbjct: 1 MSIEFLNESG-------FEGVNEEMLIDVASYAF--GAMDINPDAECTVTCVDLKTIEDL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-----------GCSSLMLGDIVLAYEIIEIEANVLG 119 + + ++ PT+V+SFP + MLGDIVL E +A G Sbjct: 52 HVRWMDLEGPTDVMSFPMDELTPGAIAGGGRPDAADPGPAMLGDIVLCPEFALRQAEAAG 111 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + L L +HG LHLLGYDH + M G + +L Sbjct: 112 HSLGHELALLTVHGCLHLLGYDHSTPAEEKEMFGRQNELLA 152 >gi|255323734|ref|ZP_05364862.1| putative metalloprotease [Corynebacterium tuberculostearicum SK141] gi|255299224|gb|EET78513.1| putative metalloprotease [Corynebacterium tuberculostearicum SK141] Length = 205 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 20/161 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++ E+ + E + S G E ++ D IE L Sbjct: 1 MSIEFLNESG-------FEGVNEEMLIDVASYAF--GAMDINPDAECTITCVDLKTIEDL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-----------GCSSLMLGDIVLAYEIIEIEANVLG 119 + + ++ PT+V+SFP + MLGDIVL E +A G Sbjct: 52 HVRWMDLEGPTDVMSFPMDELTPGAIAGGGRPDAADPGPAMLGDIVLCPEFALRQAEAAG 111 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + L L +HG LHLLGYDH + M G + +L Sbjct: 112 HSLGHELALLTVHGCLHLLGYDHSTPAEEKEMFGRQNELLA 152 >gi|229543817|ref|ZP_04432876.1| protein of unknown function UPF0054 [Bacillus coagulans 36D1] gi|229324956|gb|EEN90632.1| protein of unknown function UPF0054 [Bacillus coagulans 36D1] Length = 156 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 45/120 (37%), Positives = 64/120 (53%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E+ ELS+ FTD+ I +N +YRG D+PT+V+SF +LGDI+ Sbjct: 36 EDGTELSVTFTDNEGIREINRDYRGKDQPTDVISFALEEMGEGEIEITGAEIPRVLGDII 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ +A G FE L L +HGFLHLLGYDH+ +D M G + IL+ G+ Sbjct: 96 ISVPRAREQAEEYGHSFERELGFLAVHGFLHLLGYDHMTKEDETEMFGRQNEILDRYGLK 155 >gi|38234288|ref|NP_940055.1| putative metalloprotease [Corynebacterium diphtheriae NCTC 13129] gi|59799118|sp|Q6NG17|RRMF_CORDI RecName: Full=Probable rRNA maturation factor gi|38200551|emb|CAE50246.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 196 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ D ++ L +V G E ++ D + L Sbjct: 1 MSIEVVNESGF--DGVNEEALIDVA-------TFVLGEMDVHPDAEATISVVDVATMSDL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-------MLGDIVLAYEIIEIEANVLGKEFE 123 + + ++ PT+V+SFP + MLGDI+L E +A G + Sbjct: 52 HVRWMDLEGPTDVMSFPMDELTPGMGRPDAQPFGPAMLGDIILCPEFAAKQAAKAGHDMG 111 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + L L HG LHLLGYDH++ +D M L+ +L+ Sbjct: 112 HELALLTTHGCLHLLGYDHIEPEDEQEMFALQNELLQ 148 >gi|25028742|ref|NP_738796.1| putative metalloprotease [Corynebacterium efficiens YS-314] gi|259507803|ref|ZP_05750703.1| metalloprotease [Corynebacterium efficiens YS-314] gi|29428209|sp|Q8FNF8|RRMF_COREF RecName: Full=Probable rRNA maturation factor gi|23494028|dbj|BAC18996.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259164596|gb|EEW49150.1| metalloprotease [Corynebacterium efficiens YS-314] Length = 200 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ D ++ L +V+ + G E S+ DS I L Sbjct: 1 MSIEVFNESGY--DGVNEEMLIDVL-------SFALGEMDIHPDAEASIHIVDSDTIAEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG-------CSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + ++ ++ PT+V+SFP + MLGDIVL E E +A G + Sbjct: 52 HVKWLDLEGPTDVMSFPMDELTPGYSRPDGGAPGPAMLGDIVLCPEFAEKQATKAGHDLS 111 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + L L +HG LHLLGYDHV+ M L+ +L Sbjct: 112 HELALLTVHGCLHLLGYDHVEPAQEREMFALQNELLA 148 >gi|253732223|ref|ZP_04866388.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724012|gb|EES92741.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 155 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 48/141 (34%), Positives = 74/141 (52%), Gaps = 7/141 (4%) Query: 31 LCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L + + K + +L+ +K E+ ELS+ F D I+ +N YR DK T+V+SF Sbjct: 12 LVKDAWYKQIEDLLELAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFAL 71 Query: 89 AFASSDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 + +LGDI++ ++ + +AN G FE L L +HGFLHLLGYDH+ Sbjct: 72 EEDEPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHM 131 Query: 144 DDKDACVMEGLERSILEDLGI 164 + D M G + +IL G+ Sbjct: 132 TEADEKEMFGRQDTILNAYGL 152 >gi|296133914|ref|YP_003641161.1| protein of unknown function UPF0054 [Thermincola sp. JR] gi|296032492|gb|ADG83260.1| protein of unknown function UPF0054 [Thermincola potens JR] Length = 153 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 7/149 (4%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 +++ + + + ++ + F E+ +V D I LN +YRG+D Sbjct: 6 NNLQEKVEVPPELGETIERVANAVLEQSEF---PGAEVGIVLVDDDYIHQLNKQYRGVDS 62 Query: 80 PTNVLSFPT----AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 PT+VLSF + L+LGD+ ++ E + +A G F + +L HG Sbjct: 63 PTDVLSFALIEDGEEEFFEEEEDLLLGDVFISVERAQNQAEEYGHSFTREMAYLTAHGMF 122 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGI 164 HLLGYDH +++ +M E +L L I Sbjct: 123 HLLGYDHNTEEERDIMREKEEQVLTGLNI 151 >gi|162147625|ref|YP_001602086.1| hypothetical protein GDI_1841 [Gluconacetobacter diazotrophicus PAl 5] gi|161786202|emb|CAP55784.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] Length = 152 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 7/113 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 ++++ + I LN +R +KPTNVL+F D L GDI++A E + EA Sbjct: 33 VTIMLDNDRAIRRLNARHRDRNKPTNVLTF-------DYPGGLPGGDIMIALETVRREAQ 85 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 G+ +HL+HL++HG LHL G+DH +A ME E IL L + +P++ Sbjct: 86 AAGRPIRHHLMHLVVHGILHLRGHDHHQAGEARRMEMEEARILGRLSVPNPWK 138 >gi|114046573|ref|YP_737123.1| putative metalloprotease [Shewanella sp. MR-7] gi|123131666|sp|Q0HXT9|RRMF_SHESR RecName: Full=Probable rRNA maturation factor gi|113888015|gb|ABI42066.1| protein of unknown function UPF0054 [Shewanella sp. MR-7] Length = 153 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 59/159 (37%), Positives = 86/159 (54%), Gaps = 10/159 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDL + V+ A D + + A+ N + + EL++ D+ + L Sbjct: 3 LDLALDVQYATASDYLPSEEQFSLWVKTAIGNSMEQ--------AELTIRIVDARESQML 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP + +LGD+V+ ++E EA K E H H++ Sbjct: 55 NSTYRGKDKPTNVLSFPFE--APPEIELPLLGDLVICAAVVENEAREQDKILEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D++A ME LE ++E LG DPY+ Sbjct: 113 VHGCLHLLGYDHIEDEEAEEMESLETQLIESLGFTDPYK 151 >gi|225021772|ref|ZP_03710964.1| hypothetical protein CORMATOL_01800 [Corynebacterium matruchotii ATCC 33806] gi|305681061|ref|ZP_07403868.1| translation metalloprotein YbeY [Corynebacterium matruchotii ATCC 14266] gi|224945468|gb|EEG26677.1| hypothetical protein CORMATOL_01800 [Corynebacterium matruchotii ATCC 33806] gi|305659266|gb|EFM48766.1| translation metalloprotein YbeY [Corynebacterium matruchotii ATCC 14266] Length = 205 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 16/156 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ D ++ +L +V E+++ D + L Sbjct: 1 MSIEVVNESGY--DGVNEESLADVA-------TFVLREMDIHPSAEVTVSVVDVPTMSEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-------GCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + + G++ PT+V+SFP + + G MLGDI+L E +A G + Sbjct: 52 HLRWMGLEGPTDVMSFPMDELTPNMGRPDSAGFGPAMLGDIILCPEFAHKQATKAGHDLG 111 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L L HG LHLLGYDH+ + M L+ +L Sbjct: 112 HELCLLTTHGCLHLLGYDHITPEQEQKMFALQNELL 147 >gi|119960557|ref|YP_947971.1| metalloprotease [Arthrobacter aurescens TC1] gi|166227688|sp|A1R6V9|RRMF_ARTAT RecName: Full=Probable rRNA maturation factor gi|119947416|gb|ABM06327.1| putative uncharacterized protein family UPF0054 [Arthrobacter aurescens TC1] Length = 157 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 14/156 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + DE L TL +F + ELS++ D +E L Sbjct: 1 MSIEVNNESGVVVDEAQLVTLSRFIFER----------LYIHPQAELSILLVDEPAMEKL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFA----SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + E T+VLS P MLGDI + ++ E++A G ++ + Sbjct: 51 HIELMDEPGATDVLSVPMDELTPGTPEKPTPQGMLGDIAICPQVAEVQARNAGHPTQDEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L HG LHLLG+DH + ++ M GL+R +L + Sbjct: 111 LLLTTHGILHLLGFDHAEPEEKEEMFGLQRELLSEF 146 >gi|224476678|ref|YP_002634284.1| hypothetical protein Sca_1192 [Staphylococcus carnosus subsp. carnosus TM300] gi|254799973|sp|B9DNL6|RRMF_STACT RecName: Full=Probable rRNA maturation factor gi|222421285|emb|CAL28099.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 153 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 3/125 (2%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC---SSL 99 +K E+ ELS+ F + I+ +N +YR DK T+V+SF D Sbjct: 26 TFAKKEEKIEDDAELSVTFVNKQEIQEINRDYRNKDKVTDVISFALEEDEPDIEGLDMPR 85 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGDI++ ++ + +A G FE L L +HGFLHLLGYDH+++ D M G ++ IL Sbjct: 86 VLGDIIICADVAKEQAEEYGHSFERELGFLALHGFLHLLGYDHMNEADEKEMFGRQKLIL 145 Query: 160 EDLGI 164 ++ G+ Sbjct: 146 DNYGL 150 >gi|67920493|ref|ZP_00514013.1| Protein of unknown function UPF0054 [Crocosphaera watsonii WH 8501] gi|67857977|gb|EAM53216.1| Protein of unknown function UPF0054 [Crocosphaera watsonii WH 8501] Length = 174 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 12/166 (7%) Query: 11 LDLQIAVENALWGD---EIHLRTLCEVVFAKAVSNLISKGYFVKE--NIVELSLVFTDSH 65 + +++ +++ W + + + + F + EL+L T Sbjct: 9 IVIELNIQDVFWVNSEQRTIANPISPQTWKQWFQTWCKTLGFHLPVASNYELTLRLTGDK 68 Query: 66 RIETLNFEYRGIDKPTNVLSF-------PTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 I++LN +YR ++PT+VL+F P D L LGDI+++ E +A Sbjct: 69 EIQSLNAQYRQKNQPTDVLAFATLEWDFPVVTPPEDLLEPLYLGDIIISVETARKQAQQQ 128 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + L L HGFLHLLG+DH D+ M + ++L +G+ Sbjct: 129 DHPLKRELPWLATHGFLHLLGWDHPDEPSLEEMLQQQETLLRLVGL 174 >gi|227833630|ref|YP_002835337.1| hypothetical protein cauri_1806 [Corynebacterium aurimucosum ATCC 700975] gi|262184633|ref|ZP_06044054.1| putative metalloprotease [Corynebacterium aurimucosum ATCC 700975] gi|254800637|sp|C3PHU5|RRMF_CORA7 RecName: Full=Probable rRNA maturation factor gi|227454646|gb|ACP33399.1| hypothetical protein cauri_1806 [Corynebacterium aurimucosum ATCC 700975] Length = 191 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 63/159 (39%), Gaps = 18/159 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++ E+ + E + S + G E ++ D I L Sbjct: 1 MSIEFINESGY-------DGVNEEMLIDVCSYAL--GCLDVNPDAECTITAVDLDTIADL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGDIVLAYEIIEIEANVLGKE 121 + + ++ PT+V+SFP + MLGDIVL E + +A G Sbjct: 52 HVRWMDLEGPTDVMSFPMDELTPGASAGRPDAVEAGPAMLGDIVLCPEFAQRQATAAGHS 111 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + L L +HG LHLLGYDH + M GL+ +L Sbjct: 112 LGHELALLTVHGCLHLLGYDHTTAAEEKEMFGLQNELLA 150 >gi|186681803|ref|YP_001864999.1| metalloprotease [Nostoc punctiforme PCC 73102] gi|186464255|gb|ACC80056.1| protein of unknown function UPF0054 [Nostoc punctiforme PCC 73102] Length = 179 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 11/157 (7%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 + +E+ I T E F + L + E+ L TD +I+ LN +Y Sbjct: 22 VKIEDTD--TRIPSETW-ENWFNHWLEILQPQIP--PAPSYEIGLCLTDDSQIQELNAQY 76 Query: 75 RGIDKPTNVLSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 R +KPT+VL+F L LGDI+++ + + +A L Sbjct: 77 RQQNKPTDVLAFAALEVDFPQSKEMLASVPLYLGDIIVSVDTAQRQAKQQEHSLPTELAW 136 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L HG LHLLG+DH D++ M + +L +GI Sbjct: 137 LASHGLLHLLGWDHPDEESLGRMLKQQVRLLNAIGIA 173 >gi|304403958|ref|ZP_07385620.1| protein of unknown function UPF0054 [Paenibacillus curdlanolyticus YK9] gi|304346936|gb|EFM12768.1| protein of unknown function UPF0054 [Paenibacillus curdlanolyticus YK9] Length = 165 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 14/159 (8%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 W +E + E + L G ++SL F D I LN ++R ID+P Sbjct: 6 DWSNEQDKIEIPEAWITRLEQLLQIAGEQEGLTEGDVSLTFVDDEEIHRLNRDFRHIDRP 65 Query: 81 TNVLSFPTAFASSDGCSSL--------------MLGDIVLAYEIIEIEANVLGKEFENHL 126 T+VLSF D + MLGDI+++ E ++ G E + Sbjct: 66 TDVLSFAMQEDGEDEPEIVFEVESEDEPDPFSGMLGDIIISTERALAQSEEYGHSLEREI 125 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L +HGFLHL+GYDH D + M + ++L+ G+ Sbjct: 126 GFLFVHGFLHLIGYDHEDAEGEAEMTAKQEAVLQKAGLP 164 >gi|152976733|ref|YP_001376250.1| putative metalloprotease [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189039807|sp|A7GSZ7|RRMF_BACCN RecName: Full=Probable rRNA maturation factor gi|152025485|gb|ABS23255.1| protein of unknown function UPF0054 [Bacillus cytotoxicus NVH 391-98] Length = 156 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E+ ELS+ F D+ RI +N +YRG D+PT+V+SF MLGD++ Sbjct: 36 EDGTELSVTFVDNERIREINRDYRGKDQPTDVISFALEDMGEGEVEIIGADMPRMLGDLI 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ IL G+ Sbjct: 96 ISIPRTKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGKQKEILGAFGL 154 >gi|88606960|ref|YP_505804.1| hypothetical protein APH_1290 [Anaplasma phagocytophilum HZ] gi|123494243|sp|Q2GIJ7|RRMF_ANAPZ RecName: Full=Probable rRNA maturation factor gi|88598023|gb|ABD43493.1| conserved hypothetical protein TIGR00043 [Anaplasma phagocytophilum HZ] Length = 154 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 8/160 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ + W I ++ + + V +S+V + L Sbjct: 1 MPVEVSTIDRKWYRIIRKPK----ATSQEIVLFALRELKVDRYNPIVSVVLAHDALLLEL 56 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YR I+KPTNVLSF S + LG+I L+ + + E+ LG E H H++ Sbjct: 57 NHKYRNINKPTNVLSFNYEALS----HNCCLGEIFLSIDRLTYESKTLGVEVHAHFTHML 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 IHG LH+LGYDH +DA M+ LE +L I +PY + Sbjct: 113 IHGVLHILGYDHEVPEDAQEMQALEIDLLSKRSIENPYLI 152 >gi|329934652|ref|ZP_08284693.1| metal-dependent hydrolase [Streptomyces griseoaurantiacus M045] gi|329305474|gb|EGG49330.1| metal-dependent hydrolase [Streptomyces griseoaurantiacus M045] Length = 165 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 17/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARHALARMRIHPLS----------ELSVIVVDADAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM-----LGDIVLAYEIIEIEANVLG--KEFE 123 + ++ + PT+V+SFP G LGDIVL E+ + + Sbjct: 51 HRQWMDLPGPTDVMSFPMDELRPPGKDDDEPPQGLLGDIVLCPEVAAKQGAEAATRHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L L +HG LHLLGYDH + + M GL+ +I Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAI 145 >gi|308174320|ref|YP_003921025.1| metal-dependent hydrolase [Bacillus amyloliquefaciens DSM 7] gi|307607184|emb|CBI43555.1| putative metal-dependent hydrolase [Bacillus amyloliquefaciens DSM 7] gi|328554267|gb|AEB24759.1| metal-binding heat shock protein [Bacillus amyloliquefaciens TA208] gi|328912664|gb|AEB64260.1| putative metal-dependent hydrolase [Bacillus amyloliquefaciens LL3] Length = 157 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 14/158 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I E E + + ++ E+S+ + I +N Sbjct: 5 IDIVDETNSVS--ADALQEVEKLLQ------FAAEKEGVQDQAEVSVTIVTNDEIREINR 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 +YRG D PT+V+SF D +LGDI+++ + + +A G F L Sbjct: 57 DYRGKDTPTDVISFALEEEGEDEVEIVGADMPPVLGDIIISADRTKEQAEEYGHSFMREL 116 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L +HGFLHLLGYDH+ ++ M ++ +L++ G+ Sbjct: 117 GFLAVHGFLHLLGYDHMTKEEEEEMFSKQKDLLDEYGL 154 >gi|309790640|ref|ZP_07685193.1| protein of unknown function UPF0054 [Oscillochloris trichoides DG6] gi|308227306|gb|EFO80981.1| protein of unknown function UPF0054 [Oscillochloris trichoides DG6] Length = 161 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 7/142 (4%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L + +A+ + + + E+ ++ TD I TLN +YRG+D PT+VLSF Sbjct: 19 PDLDLNLVQQAILAVFASEPGIA--ACEVGVLITDDAHIHTLNRDYRGVDAPTDVLSFAD 76 Query: 89 AFASSD----GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 S G LGDI ++Y+ + +A G L +L HG LHLLGYDH Sbjct: 77 DGPPSAFVVAGSGPRYLGDIAISYQRVLAQAAEYGHSPARELAYLATHGTLHLLGYDHER 136 Query: 145 -DKDACVMEGLERSILEDLGIN 165 +DA M E +++ +LG++ Sbjct: 137 GPEDAAAMRLREETVMAELGLS 158 >gi|312113952|ref|YP_004011548.1| hypothetical protein Rvan_1179 [Rhodomicrobium vannielii ATCC 17100] gi|311219081|gb|ADP70449.1| protein of unknown function UPF0054 [Rhodomicrobium vannielii ATCC 17100] Length = 193 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 53/161 (32%), Positives = 75/161 (46%), Gaps = 8/161 (4%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 I++E+ W L L + A+ + + +S+ ++ +LN Sbjct: 30 DISIEDDRWVSVDGLEDLIPKLVAETLREA-----GLTPEDACVSVALMSGEQVRSLNKV 84 Query: 74 YRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 +R D TNVLSFP+ A+ LGD+ L+Y+ + EA K H HL+ Sbjct: 85 FRSKDADTNVLSFPSPEAARSAVLEDEPAFLGDVALSYDAVVGEAQAQAKTPLQHTAHLV 144 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HG LHL+G+DH D DA ME ER IL GI DPY D Sbjct: 145 AHGVLHLVGFDHEADADADAMEAAERVILARFGIPDPYRDD 185 >gi|218439664|ref|YP_002377993.1| hypothetical protein PCC7424_2713 [Cyanothece sp. PCC 7424] gi|218172392|gb|ACK71125.1| protein of unknown function UPF0054 [Cyanothece sp. PCC 7424] Length = 180 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 8/138 (5%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 + F + L+ + ELSL TD I+ N +YR ++PT+VL+F Sbjct: 41 QSWFQTWLDILLPT--LKSADSCELSLRLTDDQEIQFYNAQYRHKNQPTDVLAFAALEVD 98 Query: 93 SDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 L LGDI+++ + + +A G L L HGFLHLLG+DH DD+ Sbjct: 99 VPNLINESFDEPLYLGDIIISIDTAKRQATEQGHSLTQELAWLAAHGFLHLLGWDHPDDE 158 Query: 147 DACVMEGLERSILEDLGI 164 M + ++L ++G+ Sbjct: 159 SLSAMLAQQETLLNNIGL 176 >gi|163848855|ref|YP_001636899.1| hypothetical protein Caur_3323 [Chloroflexus aurantiacus J-10-fl] gi|222526810|ref|YP_002571281.1| hypothetical protein Chy400_3584 [Chloroflexus sp. Y-400-fl] gi|189039853|sp|A9WJ51|RRMF_CHLAA RecName: Full=Probable rRNA maturation factor gi|254765075|sp|B9LD66|RRMF_CHLSY RecName: Full=Probable rRNA maturation factor gi|163670144|gb|ABY36510.1| protein of unknown function UPF0054 [Chloroflexus aurantiacus J-10-fl] gi|222450689|gb|ACM54955.1| protein of unknown function UPF0054 [Chloroflexus sp. Y-400-fl] Length = 154 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 5/119 (4%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLA 107 E+ + T + LN ++RG+D PT+VLSF S LGDI ++ Sbjct: 34 PEGCEVGIRITTDDELHRLNRDFRGVDAPTDVLSFADDGHDSRFVVAPDQPRYLGDIAIS 93 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGIN 165 Y+ + +A G L +L +HG LHLLGYDH +A M E I+ LG+ Sbjct: 94 YQRVLAQAAEYGHSPARELAYLTVHGVLHLLGYDHEQGPAEAARMRTREEEIMTILGLP 152 >gi|37520812|ref|NP_924189.1| putative metalloprotease [Gloeobacter violaceus PCC 7421] gi|46577366|sp|Q7NL83|RRMF_GLOVI RecName: Full=Probable rRNA maturation factor gi|35211807|dbj|BAC89184.1| gll1243 [Gloeobacter violaceus PCC 7421] Length = 194 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 15/155 (9%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 +Q AV++ + + F + + L S G VEL+L TD I LN Sbjct: 41 IQAAVDDPV------GEARWQSWFDQWLLELQSAGA------VELTLRLTDDAEIRRLNA 88 Query: 73 EYRGIDKPTNVLSFPTAFAS---SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +RG+D PT+VLSF L LGDIV++ +A G E L L Sbjct: 89 RFRGVDAPTDVLSFEFEADDTQALIAEEPLYLGDIVVSVPTATRQAREFGHTLEVELAWL 148 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +HG LHLLG+DH D++ M + +L+ + + Sbjct: 149 AVHGLLHLLGWDHPDEQSWRAMVTQQARLLKGVNV 183 >gi|229013523|ref|ZP_04170657.1| metalloprotease [Bacillus mycoides DSM 2048] gi|228747760|gb|EEL97629.1| metalloprotease [Bacillus mycoides DSM 2048] Length = 136 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIV 105 E ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 16 EEGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 75 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 76 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 134 >gi|307243719|ref|ZP_07525859.1| translation metalloprotein YbeY [Peptostreptococcus stomatis DSM 17678] gi|306492928|gb|EFM64941.1| translation metalloprotein YbeY [Peptostreptococcus stomatis DSM 17678] Length = 153 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 6/154 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I E+ D + L + ++ Y ++ E+SL F + I +N Sbjct: 1 MEIIFEDR--QDFVKLDQDIMDKIEAVILEVL--AYEGYDDDYEVSLSFVSNDEIREINR 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSS--LMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 +YR IDK T+VLSFP + LGDIV++ E +A G E + L+ Sbjct: 57 DYRNIDKVTDVLSFPMYDGEEVDVDFGAISLGDIVISIERAADQAKDFGHSLEREVCFLV 116 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 H HLLGYDH+++++A M E +L LGI Sbjct: 117 CHSMFHLLGYDHMEEEEAKEMHAKEEDVLSQLGI 150 >gi|260892062|ref|YP_003238159.1| protein of unknown function UPF0054 [Ammonifex degensii KC4] gi|260864203|gb|ACX51309.1| protein of unknown function UPF0054 [Ammonifex degensii KC4] Length = 149 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 7/146 (4%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 + V+N +++ + + +A + VE+ + D I LN Y Sbjct: 3 VIVQN--LQEKVKVESEWLSAVRRAAELALD--LLGPRREVEVGVTLLDDTGIRELNRRY 58 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 RG D PTNVL+FP L+LGD+V++ E EA GK E L HL++HG Sbjct: 59 RGKDAPTNVLAFPMGEEEPPV---LLLGDVVISVETARSEAEEEGKGIEEKLAHLVVHGV 115 Query: 135 LHLLGYDHVDDKDACVMEGLERSILE 160 LHLLGYDH D + +M E ++L Sbjct: 116 LHLLGYDHETDAEEALMREKEEAVLA 141 >gi|332707781|ref|ZP_08427808.1| conserved hypothetical protein TIGR00043 [Lyngbya majuscula 3L] gi|332353484|gb|EGJ32997.1| conserved hypothetical protein TIGR00043 [Lyngbya majuscula 3L] Length = 175 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 9/141 (6%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E F + + L + N ELSL TD+ I+ LN +YR ++PT+VL+F + Sbjct: 35 ESWFDQWLVALEPD--LPEANSYELSLRLTDNSEIQALNSQYRKKNQPTDVLAFAALEVN 92 Query: 93 SDGCSS-------LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 S S L LGDIV++ + +A G L L HG LHLLG+DH D+ Sbjct: 93 SPKLSPQKQLSVPLYLGDIVISVDTAVQQAKQHGHSVSTELAWLATHGLLHLLGWDHPDE 152 Query: 146 KDACVMEGLERSILEDLGIND 166 + M + ++L+ +G+++ Sbjct: 153 ESLLRMLDQQETLLQSVGLSN 173 >gi|324998268|ref|ZP_08119380.1| metal-binding heat shock protein [Pseudonocardia sp. P1] Length = 181 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 17/156 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + DE + ++ EL++ +E L Sbjct: 1 MSIEVVNESGIAIDEAQIVSVARYALDAM----------KVNPAAELAITAVALDAMEEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM-------LGDIVLAYEIIEIEANVLGKEFE 123 + + PT+V++FP + DG LGD+VL +A G Sbjct: 51 HVRWMDEPGPTDVMAFPMDSLADDGRRPDAPDLGPALLGDVVLCPAFARDQARKAGHTLA 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L L +HG LHLLGYDH++ D M L+ +L Sbjct: 111 DELHLLTVHGILHLLGYDHLEPDDEREMFALQNRLL 146 >gi|291484979|dbj|BAI86054.1| putative metalloprotease [Bacillus subtilis subsp. natto BEST195] Length = 157 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 14/159 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I E +E+ E + + ++ E+S+ + I +N Sbjct: 5 IDIVDETGSVSEELLKE--VENLLQ------FAAEREGVQDQAEVSVTIVSNDDIHQINK 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 EYRG D PT+V+SF +LGDI+++ + +A F+ L Sbjct: 57 EYRGKDAPTDVISFALEEEGEGEIEIVGAEMPPVLGDIIISADRTREQAEEYNHSFKREL 116 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L +HGFLHLLGYDH+ ++ M ++ +L+ G+ Sbjct: 117 GFLAVHGFLHLLGYDHMTKEEEEEMFTKQKELLDAYGLK 155 >gi|254819388|ref|ZP_05224389.1| putative metalloprotease [Mycobacterium intracellulare ATCC 13950] Length = 177 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V AK ELS+V D+ + L Sbjct: 1 MSIEVSNESGIDVSEAELISVARHVIAKM----------DVNPAAELSMVLLDTAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP MLGDIVL E +A G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPSMLGDIVLCPEFAAGQAAAAGHSLGH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L L IHG LHL+GYDH + + M L+ +LE+ Sbjct: 111 ELALLTIHGVLHLIGYDHGEPDEEKEMFALQDRLLEE 147 >gi|295838976|ref|ZP_06825909.1| metalloprotease [Streptomyces sp. SPB74] gi|197695531|gb|EDY42464.1| metalloprotease [Streptomyces sp. SPB74] Length = 165 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 17/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + + + +S ELS++ D +E L Sbjct: 1 MSIDVNNESGTEADEEAILDIARYALGRMRIHPLS----------ELSVILVDGPAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM-----LGDIVLAYEIIEIEANV--LGKEFE 123 + ++ + PT+V+SFP LGDIVL E+ E + + Sbjct: 51 HVQWMDLPGPTDVMSFPMDELRPPVKDDEQPPQGLLGDIVLCPEVAERQGREAPTEHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L L +HG LHLLGYDH + + M GL+++I Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQQAI 145 >gi|326381614|ref|ZP_08203308.1| metal-binding heat shock protein [Gordonia neofelifaecis NRRL B-59395] gi|326199861|gb|EGD57041.1| metal-binding heat shock protein [Gordonia neofelifaecis NRRL B-59395] Length = 180 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + E + + + ELS+ DS + L Sbjct: 1 MSIELFNESGIDVPEQLIIEAARFAMRRMEVH----------PGAELSIQLIDSESMAEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + ++ + PT+V+SFP + D MLGDIVL E +A FE+ Sbjct: 51 HMQWMDLPGPTDVMSFPMDELTPGGRPDADDPGPAMLGDIVLCPEFAGEQAKSQHHSFEH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + L +HG LHLLG+DH + +D M GL+ I+ + Sbjct: 111 EIAVLTVHGVLHLLGFDHAEPEDEREMFGLQGQIITE 147 >gi|260436620|ref|ZP_05790590.1| putative metalloprotease [Synechococcus sp. WH 8109] gi|260414494|gb|EEX07790.1| putative metalloprotease [Synechococcus sp. WH 8109] Length = 172 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 61/147 (41%), Gaps = 4/147 (2%) Query: 17 VENALWGDEIHLRTLCEVVFAKAV--SNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 ++ DE + ++L + L L FTD I LN + Sbjct: 17 SDSIDLLDETVWLQQFDRWLNGICGDASLACPPLVRSAEELSLGLRFTDDAAIADLNSAW 76 Query: 75 RGIDKPTNVLSFPTAFASSD--GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 R PT+VLSF + D S+ LGDIV++ E +A G L L+ H Sbjct: 77 RQKTGPTDVLSFAALDDAGDWMEGPSIELGDIVVSLETARRQAQEQGHSLNRELRWLVSH 136 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSIL 159 G LHLLG+DH D+ M L+ +L Sbjct: 137 GLLHLLGWDHPDEDSLAAMLALQERLL 163 >gi|302518989|ref|ZP_07271331.1| metal-dependent hydrolase [Streptomyces sp. SPB78] gi|318062407|ref|ZP_07981128.1| metal-binding heat shock protein [Streptomyces sp. SA3_actG] gi|318079398|ref|ZP_07986730.1| metal-binding heat shock protein [Streptomyces sp. SA3_actF] gi|333027184|ref|ZP_08455248.1| putative metalloprotease [Streptomyces sp. Tu6071] gi|302427884|gb|EFK99699.1| metal-dependent hydrolase [Streptomyces sp. SPB78] gi|332747036|gb|EGJ77477.1| putative metalloprotease [Streptomyces sp. Tu6071] Length = 165 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 17/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + + + +S ELS++ D +E L Sbjct: 1 MSIDVNNESGTEADEEAILDIARYALGRMRIHPLS----------ELSVILVDGPAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-----GCSSLMLGDIVLAYEIIEIEANV--LGKEFE 123 + ++ + PT+V+SFP +LGDIVL E+ E + + Sbjct: 51 HVQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEVAERQGREAPTEHSTD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L L +HG LHLLGYDH + + M GL+++I Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQQAI 145 >gi|313903261|ref|ZP_07836653.1| protein of unknown function UPF0054 [Thermaerobacter subterraneus DSM 13965] gi|313466349|gb|EFR61871.1| protein of unknown function UPF0054 [Thermaerobacter subterraneus DSM 13965] Length = 177 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 70/163 (42%), Gaps = 17/163 (10%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 D + + + + V L++ VE+SL F D I+ LN YRG D Sbjct: 17 DNHQDRLAVPPHWDRLLPAVVGRLLAAEGLGV--PVEISLTFVDDVAIQELNRRYRGKDA 74 Query: 80 PTNVLSFPTAFASS---------------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 PT+VLSFP G + LGD+V++ E +A G + Sbjct: 75 PTDVLSFPQLEPDEVAALVRAPAVPAQVAPGPEPVPLGDVVISLERAAAQARDYGHSLDR 134 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 + +L+ HG LHLLGYDH D + M + L D G++ P Sbjct: 135 EVGYLLAHGVLHLLGYDHPDAERERRMHEKAEAALADCGLSRP 177 >gi|300858949|ref|YP_003783932.1| hypothetical protein cpfrc_01532 [Corynebacterium pseudotuberculosis FRC41] gi|300686403|gb|ADK29325.1| hypothetical protein cpfrc_01532 [Corynebacterium pseudotuberculosis FRC41] gi|302331199|gb|ADL21393.1| Putative metalloprotease [Corynebacterium pseudotuberculosis 1002] Length = 196 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ D ++ L +V G E+++ D + L Sbjct: 1 MSIEVVNESGC--DGVNEEALIDVA-------TFVLGEMDVHPDAEVTISVVDVPTMSDL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG-------CSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + + ++ PT+V+SFP + +LGDI+L + +A G + Sbjct: 52 HVRWMDLEGPTDVMSFPMDELTPGMGRPDAGAPGPALLGDIILCPDFAMKQAEKAGHDLG 111 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + L L HG LHLLGYDH++ D M L+ +L Sbjct: 112 HELALLTTHGCLHLLGYDHIEPADEQTMFSLQNELLS 148 >gi|302206650|gb|ADL10992.1| Putative metalloprotease [Corynebacterium pseudotuberculosis C231] gi|308276893|gb|ADO26792.1| Putative metalloprotease [Corynebacterium pseudotuberculosis I19] Length = 196 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ D ++ L +V G E+++ D + L Sbjct: 1 MSIEVVNESGC--DGVNEEALIDVA-------TFVLGEMDVHPDAEVTISVVDVPTMSDL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG-------CSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + + ++ PT+V+SFP + +LGDI+L + +A G + Sbjct: 52 HVRWMDLEGPTDVMSFPMDELTPGMGRPDAGAPGPALLGDIILCPDFAMKQAEKAGHDLG 111 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + L L HG LHLLGYDH++ D M L+ +L Sbjct: 112 HELALLTTHGCLHLLGYDHIEPADEQTMFSLQNELLS 148 >gi|209694557|ref|YP_002262485.1| putative metalloprotease [Aliivibrio salmonicida LFI1238] gi|226703999|sp|B6EIN6|RRMF_ALISL RecName: Full=Probable rRNA maturation factor gi|208008508|emb|CAQ78679.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 153 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 13/163 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQIA EN ++ + + EL++ D Sbjct: 3 IELDLQIACENE---KDLPSEKDFMSWLNAVLPQFQPQ--------AELTIRIVDEKESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN +YRG+DKPTNVLSFP + +LGD+++ +++E EA K H H Sbjct: 52 ELNHQYRGMDKPTNVLSFPFE--APPEVEIDLLGDLIICRQVVEKEAVEQNKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D++A ME LE +++++G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDEEAEEMESLETELMQEMGFEDPYLAE 152 >gi|319935426|ref|ZP_08009863.1| metalloprotease [Coprobacillus sp. 29_1] gi|319809642|gb|EFW06055.1| metalloprotease [Coprobacillus sp. 29_1] Length = 153 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 8/157 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + E+ L + + + A+ Y E+ VELS + D RI + Sbjct: 1 MAIDFVYEDELKLSKDNYEQQFIKIVEAALQ------YLKIEDDVELSCIIVDDERIHEI 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N EYR ID+ T+V+SF LGDI ++Y I+A + + Sbjct: 55 NKEYRNIDRSTDVISFALEDNDQFYVAGMPRSLGDIFISYHHACIQAEEYQHTLKREMCF 114 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L HG LHLLGYDH++++D M L++ IL LGI Sbjct: 115 LFTHGLLHLLGYDHMNEEDEKEMFTLQKEILNQLGIE 151 >gi|297617803|ref|YP_003702962.1| hypothetical protein Slip_1638 [Syntrophothermus lipocalidus DSM 12680] gi|297145640|gb|ADI02397.1| protein of unknown function UPF0054 [Syntrophothermus lipocalidus DSM 12680] Length = 158 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 13/162 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ + ++ E+ +A+ E+SLV D I + Sbjct: 1 MEITVINR----QTKVDWDPGLEIKVIQALQRTGQIHGL--PPETEVSLVLVDEEEIRSF 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGC-------SSLMLGDIVLAYEIIEIEANVLGKEFE 123 N EYRG+D+PT+VLSF +SD +LGDI+++ E E + G Sbjct: 55 NREYRGVDRPTDVLSFALNEGTSDEPGYEAPEEMEPVLGDIIISLETAEDQGRDYGHGLA 114 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +L +HG LHLLGYDH D++ M +E +L+D+G++ Sbjct: 115 REVAYLAVHGMLHLLGYDHQDEEARTEMRLMEERVLKDVGLD 156 >gi|169628759|ref|YP_001702408.1| putative metalloprotease [Mycobacterium abscessus ATCC 19977] gi|238688929|sp|B1MN42|RRMF_MYCA9 RecName: Full=Probable rRNA maturation factor gi|169240726|emb|CAM61754.1| Conserved hypothetical protein [Mycobacterium abscessus] Length = 170 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 16/156 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + E L ++ A + ELS++ D + L Sbjct: 1 MSIEVVNESGIDVAEGELVSVARFAIAAMDVH----------PAAELSMMLVDLAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP MLGDIVL + +A G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPSMLGDIVLCPQFAAEQAEAAGHSLAH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 L L +HG LHLLGYDH + ++ M L+ +L+ Sbjct: 111 ELALLTVHGVLHLLGYDHAEPEEEREMFALQNQLLQ 146 >gi|163942059|ref|YP_001646943.1| putative metalloprotease [Bacillus weihenstephanensis KBAB4] gi|226701663|sp|A9VHT0|RRMF_BACWK RecName: Full=Probable rRNA maturation factor gi|163864256|gb|ABY45315.1| protein of unknown function UPF0054 [Bacillus weihenstephanensis KBAB4] Length = 156 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 74/158 (46%), Gaps = 14/158 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + E DE +L + KA E ELS+ F D+ RI +N Sbjct: 5 IDFIDETEEVKDEY--ISLIRGLVEKAAQM------ENIEEGAELSVTFVDNERIREINR 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 +YR D+PT+V+SF MLGD++++ + +A G F+ L Sbjct: 57 DYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLIISIPRAKEQAEEYGHSFDREL 116 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 117 GFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 154 >gi|159899181|ref|YP_001545428.1| hypothetical protein Haur_2662 [Herpetosiphon aurantiacus ATCC 23779] gi|159892220|gb|ABX05300.1| protein of unknown function UPF0054 [Herpetosiphon aurantiacus ATCC 23779] Length = 174 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 18/127 (14%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF------------------PTAFASSDGCS 97 E+ + T+ + LN +YRG+D+PT+VLSF F + Sbjct: 40 EIGIRITNDQELHELNRQYRGVDRPTDVLSFGEYEDDDDDFIVPDGVYDDDEFDDPEADE 99 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 + LGD+ ++YE + +A L +L+ HG LHLLGYDH D++ M E Sbjct: 100 AAYLGDLAISYERVLAQAQEYAHSSRRELCYLVAHGTLHLLGYDHETDEEREDMRQREEK 159 Query: 158 ILEDLGI 164 L LGI Sbjct: 160 ALSTLGI 166 >gi|296269140|ref|YP_003651772.1| hypothetical protein Tbis_1157 [Thermobispora bispora DSM 43833] gi|296091927|gb|ADG87879.1| protein of unknown function UPF0054 [Thermobispora bispora DSM 43833] Length = 156 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 17/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E+ + DE L L E V + + ELS++ D + L Sbjct: 1 MSIELANESGVEIDESALVDLAEHVLHRM----------GINPLAELSILVVDEAAMAEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + + G PT+VL+FP + +LGD+VL ++ +A G + Sbjct: 51 HERWMGEPGPTDVLAFPMDELRPHSTRDEEHPPNPALLGDVVLCPQVAAKQAAEAGHGAQ 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L L HG LHLLGYDH + ++ M GL+ +L Sbjct: 111 EELELLCTHGILHLLGYDHAEPEEHAEMFGLQEELLNS 148 >gi|300812188|ref|ZP_07092630.1| translation metalloprotein YbeY [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496824|gb|EFK31904.1| translation metalloprotein YbeY [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 174 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ T + + + L+ +K K+N E+S+ F D R + +N +YR Sbjct: 5 DVSYSDEVGFLTKGDRDWEDWIMQLLLMAKKEIGKDNAQEMSINFVDEDRSQAINRDYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D + +GD+ + +IE + G F+ Sbjct: 65 KDRPTDVISFAIEDGDDGLDLAMFTQDPDFTEDIGDLFMCPSVIERHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + I+HG+LHL GYDH++ +A M G++ ILE+ G+ Sbjct: 125 YTIVHGYLHLNGYDHIEPDEAKEMFGIQGKILEEYGLP 162 >gi|228999095|ref|ZP_04158677.1| metalloprotease [Bacillus mycoides Rock3-17] gi|229006643|ref|ZP_04164277.1| metalloprotease [Bacillus mycoides Rock1-4] gi|228754504|gb|EEM03915.1| metalloprotease [Bacillus mycoides Rock1-4] gi|228760712|gb|EEM09676.1| metalloprotease [Bacillus mycoides Rock3-17] Length = 143 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E+ ELS+ F D+ RI+ +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EDGTELSVTFVDNERIQEINRDYRDKDQPTDVISFAMEDMGEGEMEIVGAEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ D+D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTDEDEKEMFGKQKEILEAFGL 141 >gi|295706636|ref|YP_003599711.1| hypothetical protein BMD_4537 [Bacillus megaterium DSM 319] gi|294804295|gb|ADF41361.1| conserved hypothetical protein [Bacillus megaterium DSM 319] Length = 156 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 14/159 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + E E E + A Y + E+S+ F D+ RI+ +N Sbjct: 5 IDFIDETNEVSKEQQKE--LEQLLEAA------AIYENLQEDAEVSVTFVDNDRIQEINH 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 +YR ++PT+V+SF D +LGDIV++ +A F L Sbjct: 57 QYRHKNQPTDVISFALEEMGEDEMQIIGDEMPRVLGDIVISIPKAHEQAEEYNHSFMREL 116 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L +HGFLHLLGYDH +D M ++ ILE G++ Sbjct: 117 GFLTVHGFLHLLGYDHETSEDEKEMFTRQKDILEQYGLS 155 >gi|228993045|ref|ZP_04152968.1| metalloprotease [Bacillus pseudomycoides DSM 12442] gi|228766693|gb|EEM15333.1| metalloprotease [Bacillus pseudomycoides DSM 12442] Length = 143 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E+ ELS+ F D+ RI+ +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EDGTELSVTFVDNERIQEINRDYRDKDQPTDVISFAMEDMGEGEMEIVGAEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ D+D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTDEDEQEMFGKQKEILEAFGL 141 >gi|47567867|ref|ZP_00238575.1| conserved hypothetical protein protein TIGR00043 [Bacillus cereus G9241] gi|47555544|gb|EAL13887.1| conserved hypothetical protein protein TIGR00043 [Bacillus cereus G9241] Length = 156 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 74/158 (46%), Gaps = 14/158 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + E +E L V KA E+ ELS+ F D+ RI +N Sbjct: 5 IDFIDETEEVKEEYVN--LIREVLGKAAQM------EKIEDGAELSVTFVDNERIREINR 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 +YR D+PT+V+SF MLGD++++ + +A G F+ L Sbjct: 57 DYRDKDQPTDVISFAMEEMGEGEMEIVGVEMPRMLGDLIISIPRAKEQAEEYGHSFDREL 116 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 117 GFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 154 >gi|206891031|ref|YP_002248706.1| hypothetical protein THEYE_A0868 [Thermodesulfovibrio yellowstonii DSM 11347] gi|254806638|sp|B5YKE1|RRMF_THEYD RecName: Full=Probable rRNA maturation factor gi|206742969|gb|ACI22026.1| conserved hypothetical protein, putative [Thermodesulfovibrio yellowstonii DSM 11347] Length = 159 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 7/160 (4%) Query: 9 PRLDLQIAVENALW----GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 R+ +++ I + +SK + +S++F Sbjct: 1 MRISVEVINRQRKIRVASKKVISRIKKIVSFLYETKDKKLSKITVKNPAFLLISVIFVGD 60 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 +++ LN +YRG + T++LSFP +L LG+I++ + + +A K F Sbjct: 61 QKMKELNSKYRGKNSVTDILSFPYLENEP--SGNLFLGEIIINPKKVFSQAKQYNKTFWQ 118 Query: 125 HLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLG 163 L ++ HG LHLLGYDH D +A M LE+ IL +L Sbjct: 119 ELDRILAHGILHLLGYDHEVSDSEARKMRKLEQKILSNLK 158 >gi|302551323|ref|ZP_07303665.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] gi|302468941|gb|EFL32034.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] Length = 165 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 17/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALARMRIHPLS----------ELSVIVVDADAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEA--NVLGKEFE 123 + ++ + PT+V+SFP D +LGDIVL E+ + + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPSKDDDEPPQGLLGDIVLCPEVAQKQGQEAETQHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L L +HG LHLLGYDH + + M GL+ +I Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAI 145 >gi|228954587|ref|ZP_04116612.1| metalloprotease [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071806|ref|ZP_04205021.1| metalloprotease [Bacillus cereus F65185] gi|229081563|ref|ZP_04214061.1| metalloprotease [Bacillus cereus Rock4-2] gi|229180580|ref|ZP_04307922.1| metalloprotease [Bacillus cereus 172560W] gi|229192512|ref|ZP_04319475.1| metalloprotease [Bacillus cereus ATCC 10876] gi|228591089|gb|EEK48945.1| metalloprotease [Bacillus cereus ATCC 10876] gi|228603004|gb|EEK60483.1| metalloprotease [Bacillus cereus 172560W] gi|228701768|gb|EEL54256.1| metalloprotease [Bacillus cereus Rock4-2] gi|228711401|gb|EEL63361.1| metalloprotease [Bacillus cereus F65185] gi|228805244|gb|EEM51838.1| metalloprotease [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 154 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 8/149 (5%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKE--NIVELSLVFTDSHRIETLNFEYRGIDKPT 81 D I + + + ++ K ++ + E+S+ F D+ RI +N +YR D+PT Sbjct: 4 DFIDETEEVKEAYMSLIREVLEKAAQMENIEDGAEVSVTFVDNERIREINRDYRDKDQPT 63 Query: 82 NVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 +V+SF MLGD++++ + +A G F+ L L +HGFL Sbjct: 64 DVISFAMEEMGEGEMEIVGAEMPRMLGDLIISIPRAKEQAEEYGHSFDRELGFLALHGFL 123 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGI 164 HLLGYDH+ ++D M G ++ ILE G+ Sbjct: 124 HLLGYDHMTEEDEKEMFGRQKEILEAFGL 152 >gi|228923055|ref|ZP_04086348.1| metalloprotease [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836688|gb|EEM82036.1| metalloprotease [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 154 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 8/149 (5%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKE--NIVELSLVFTDSHRIETLNFEYRGIDKPT 81 D I + + + ++ K ++ + VE+S+ F D+ RI +N +YR D+PT Sbjct: 4 DFIDETEEVKEAYMSLIREVLEKAAQMENIEDGVEVSVTFVDNERIREINRDYRDKDQPT 63 Query: 82 NVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 +V+SF MLGD++++ + +A G F+ L L +HGFL Sbjct: 64 DVISFAMEEMGEGEMEIVGAEMPRMLGDLIISIPRAKEQAEEYGHSFDRELGFLALHGFL 123 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGI 164 HLLGYDH+ ++D M G ++ ILE G+ Sbjct: 124 HLLGYDHMTEEDEKEMFGRQKEILEAFGL 152 >gi|237747923|ref|ZP_04578403.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229379285|gb|EEO29376.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 166 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 25/168 (14%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 + DE TL + V + ++L F D+ TLN EYR D Sbjct: 6 QYPDERLKTTLTRPKLRRWVQAALQM-------PAVITLRFVDAEEGRTLNREYREKDYA 58 Query: 81 TNVLSFPTAF------------------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 TNVL+FP D + DIVL +++E EA GK Sbjct: 59 TNVLTFPYDDMDEFDLTDAVPSRPEPEADRDDIPEQMAQADIVLCTDVLEKEAKEQGKSL 118 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 E H HL++HG LH GYDH++D++A ME LE+ IL LGI +PYE Sbjct: 119 EAHAAHLVVHGTLHAQGYDHLNDEEAEEMETLEKQILAKLGIANPYED 166 >gi|75762398|ref|ZP_00742269.1| Hypothetical metal-binding protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899469|ref|YP_002447880.1| hypothetical protein BCG9842_B0816 [Bacillus cereus G9842] gi|226708103|sp|B7IYF4|RRMF_BACC2 RecName: Full=Probable rRNA maturation factor gi|74490110|gb|EAO53455.1| Hypothetical metal-binding protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542257|gb|ACK94651.1| conserved hypothetical protein TIGR00043 [Bacillus cereus G9842] Length = 156 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 8/149 (5%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKE--NIVELSLVFTDSHRIETLNFEYRGIDKPT 81 D I + + + ++ K ++ + E+S+ F D+ RI +N +YR D+PT Sbjct: 6 DFIDETEEVKEAYMSLIREVLEKAAQMENIEDGAEVSVTFVDNERIREINRDYRDKDQPT 65 Query: 82 NVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 +V+SF MLGD++++ + +A G F+ L L +HGFL Sbjct: 66 DVISFAMEEMGEGEMEIVGAEMPRMLGDLIISIPRAKEQAEEYGHSFDRELGFLALHGFL 125 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGI 164 HLLGYDH+ +++ M G ++ ILE G+ Sbjct: 126 HLLGYDHMTEEEEKEMFGRQKEILEAFGL 154 >gi|239931373|ref|ZP_04688326.1| putative metalloprotease [Streptomyces ghanaensis ATCC 14672] gi|291439743|ref|ZP_06579133.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291342638|gb|EFE69594.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 165 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 17/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDERAILDIARYALARMRIHPLS----------ELSVIVVDADAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANV--LGKEFE 123 + ++ + PT+V+SFP D +LGDIVL E+ + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPSKDDDEPPQGLLGDIVLCPEVAARQGKEAPTQHTMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L L +HG LHLLGYDH + + M GL+ +I Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAI 145 >gi|23099408|ref|NP_692874.1| putative metalloprotease [Oceanobacillus iheyensis HTE831] gi|29428201|sp|Q8EPX8|RRMF_OCEIH RecName: Full=Probable rRNA maturation factor gi|22777637|dbj|BAC13909.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 154 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------ 97 + + ELS+ F D+ I+ LN YR D PT+V+SF ++ D Sbjct: 26 FAAQKEGVTSEAELSVNFVDNKEIQVLNRNYRQKDTPTDVISFAMQESNEDEMEIIGADG 85 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 L+LGDIV++ + + ++ E L L +HGFLHLLGYDH+ ++D M + Sbjct: 86 PLVLGDIVISVDKAKEQSIEYDHSLERELGFLAVHGFLHLLGYDHMKEEDEKKMFSRQEE 145 Query: 158 ILEDLGIN 165 IL + G+ Sbjct: 146 ILGEFGVE 153 >gi|294629266|ref|ZP_06707826.1| metalloprotease [Streptomyces sp. e14] gi|292832599|gb|EFF90948.1| metalloprotease [Streptomyces sp. e14] Length = 165 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 17/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALARMRIHPLS----------ELSVIVVDADAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM-----LGDIVLAYEIIEIEANV--LGKEFE 123 + ++ + PT+V+SFP G LGDIVL E+ + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPGKDEEEPPQGLLGDIVLCPEVAAKQGAEAPTQHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L L +HG LHLLGYDH + + M GL+ +I Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAI 145 >gi|229061996|ref|ZP_04199322.1| metalloprotease [Bacillus cereus AH603] gi|229135128|ref|ZP_04263930.1| metalloprotease [Bacillus cereus BDRD-ST196] gi|228648357|gb|EEL04390.1| metalloprotease [Bacillus cereus BDRD-ST196] gi|228717305|gb|EEL68978.1| metalloprotease [Bacillus cereus AH603] Length = 143 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIV 105 E ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EEGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 141 >gi|126652812|ref|ZP_01724957.1| hypothetical protein BB14905_09040 [Bacillus sp. B14905] gi|126590348|gb|EAZ84468.1| hypothetical protein BB14905_09040 [Bacillus sp. B14905] Length = 157 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIV 105 E E+S+ F + I+ +N EYRG D+PT+V+SF +LGDI+ Sbjct: 36 EPETEVSVTFVTNDTIQDINREYRGKDQPTDVISFALEELGEGEMTVTFEGMPRILGDII 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + + +A FE L L +HGFLHLLGYDH++ ++ VM + IL+ G+ Sbjct: 96 ISTDRAKEQAEEYNHSFERELGFLAVHGFLHLLGYDHMEPEEEKVMFTKQDEILQTFGL 154 >gi|42783429|ref|NP_980676.1| putative metalloprotease [Bacillus cereus ATCC 10987] gi|59799126|sp|Q730N3|RRMF_BACC1 RecName: Full=Probable rRNA maturation factor gi|42739358|gb|AAS43284.1| conserved hypothetical protein TIGR00043 [Bacillus cereus ATCC 10987] Length = 156 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 14/158 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + E +E L + KA E+ ELS+ F D+ RI +N Sbjct: 5 IDFIDETEEVKEEYVN--LIREILGKAAQM------EKIEDGAELSVTFVDNERIREINR 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 +YR D+PT+V+SF MLGD++++ + +A G F+ L Sbjct: 57 DYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLIISIPRAKEQAEEYGHSFDREL 116 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 117 GFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 154 >gi|294501289|ref|YP_003564989.1| hypothetical protein BMQ_4551 [Bacillus megaterium QM B1551] gi|294351226|gb|ADE71555.1| conserved hypothetical protein [Bacillus megaterium QM B1551] Length = 156 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 8/150 (5%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKE--NIVELSLVFTDSHRIETLNFEYRGIDKPT 81 D I K + L+ + E+S+ F D+ RI+ +N +YR ++PT Sbjct: 6 DFIDETNEVSEEQQKELEKLLEAAAIYENLQENAEVSVTFVDNDRIQEINHQYRHKNQPT 65 Query: 82 NVLSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 +V+SF D +LGDIV++ +A F L L +HGFL Sbjct: 66 DVISFALEEMGEDEMQIIGDELPRVLGDIVISIPKAHEQAEEYNHSFMRELGFLTVHGFL 125 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGIN 165 HLLGYDH +D M ++ ILE G++ Sbjct: 126 HLLGYDHETSEDEKEMFTRQKDILEQYGLS 155 >gi|218233833|ref|YP_002369110.1| putative metalloprotease [Bacillus cereus B4264] gi|226706180|sp|B7HCS7|RRMF_BACC4 RecName: Full=Probable rRNA maturation factor gi|218161790|gb|ACK61782.1| conserved hypothetical protein TIGR00043 [Bacillus cereus B4264] Length = 156 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 14/158 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + E +E +L V KA E+ E+S+ F D+ RI +N Sbjct: 5 IDFIDETEEVKEEY--MSLIREVLEKAAQM------ESIEDGAEVSVTFVDNERIREINR 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 +YR D+PT+V+SF MLGD++++ + +A G F+ L Sbjct: 57 DYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLIISIPRAKEQAEEYGHSFDREL 116 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 117 GFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 154 >gi|149183353|ref|ZP_01861791.1| hypothetical protein BSG1_06587 [Bacillus sp. SG-1] gi|148848950|gb|EDL63162.1| hypothetical protein BSG1_06587 [Bacillus sp. SG-1] Length = 156 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 12/160 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++L+I + R L + + + G E EL++ F + RI+ + Sbjct: 1 MNLEIDFLDETNKLSESDRELVQSLLD------YAAGQENVEPASELTVSFVTNERIQEI 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIVLAYEIIEIEANVLGKEFEN 124 N EYR D+PT+V+SF D +LGDI+++ E + +A+ G F Sbjct: 55 NKEYRDKDQPTDVISFALEELGEDETVIVGDGIPRILGDIIISVEKAKDQADEYGHSFSR 114 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L +HGFLHLLGYDH++++D M G ++ IL+ G+ Sbjct: 115 ELGFLALHGFLHLLGYDHMNEEDEKRMFGRQKEILDGYGL 154 >gi|30264373|ref|NP_846750.1| putative metalloprotease [Bacillus anthracis str. Ames] gi|47529824|ref|YP_021173.1| putative metalloprotease [Bacillus anthracis str. 'Ames Ancestor'] gi|49187198|ref|YP_030450.1| putative metalloprotease [Bacillus anthracis str. Sterne] gi|49478831|ref|YP_038358.1| putative metalloprotease [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141201|ref|YP_085629.1| putative metalloprotease [Bacillus cereus E33L] gi|118479472|ref|YP_896623.1| putative metalloprotease [Bacillus thuringiensis str. Al Hakam] gi|165872063|ref|ZP_02216703.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0488] gi|167634675|ref|ZP_02392995.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0442] gi|167638548|ref|ZP_02396824.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0193] gi|170687424|ref|ZP_02878641.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0465] gi|170707368|ref|ZP_02897822.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0389] gi|177653283|ref|ZP_02935535.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0174] gi|190566886|ref|ZP_03019802.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis Tsiankovskii-I] gi|196034368|ref|ZP_03101777.1| conserved hypothetical protein TIGR00043 [Bacillus cereus W] gi|196039279|ref|ZP_03106585.1| conserved hypothetical protein TIGR00043 [Bacillus cereus NVH0597-99] gi|196046290|ref|ZP_03113516.1| conserved hypothetical protein TIGR00043 [Bacillus cereus 03BB108] gi|206978415|ref|ZP_03239284.1| conserved hypothetical protein TIGR00043 [Bacillus cereus H3081.97] gi|217961793|ref|YP_002340363.1| putative metalloprotease [Bacillus cereus AH187] gi|218905440|ref|YP_002453274.1| conserved hypothetical protein TIGR00043 [Bacillus cereus AH820] gi|222097748|ref|YP_002531805.1| metalloprotease [Bacillus cereus Q1] gi|225866284|ref|YP_002751662.1| conserved hypothetical protein TIGR00043 [Bacillus cereus 03BB102] gi|227817079|ref|YP_002817088.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. CDC 684] gi|229601436|ref|YP_002868592.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0248] gi|254684060|ref|ZP_05147920.1| putative metalloprotease [Bacillus anthracis str. CNEVA-9066] gi|254721894|ref|ZP_05183683.1| putative metalloprotease [Bacillus anthracis str. A1055] gi|254736408|ref|ZP_05194114.1| putative metalloprotease [Bacillus anthracis str. Western North America USA6153] gi|254741446|ref|ZP_05199133.1| putative metalloprotease [Bacillus anthracis str. Kruger B] gi|254750884|ref|ZP_05202923.1| putative metalloprotease [Bacillus anthracis str. Vollum] gi|254757788|ref|ZP_05209815.1| putative metalloprotease [Bacillus anthracis str. Australia 94] gi|301055795|ref|YP_003794006.1| hypothetical protein BACI_c42720 [Bacillus anthracis CI] gi|33301868|sp|Q81LT4|RRMF_BACAN RecName: Full=Probable rRNA maturation factor gi|59799092|sp|Q634N8|RRMF_BACCZ RecName: Full=Probable rRNA maturation factor gi|59799112|sp|Q6HDL8|RRMF_BACHK RecName: Full=Probable rRNA maturation factor gi|145558821|sp|A0RIS3|RRMF_BACAH RecName: Full=Probable rRNA maturation factor gi|226706167|sp|B7JN28|RRMF_BACC0 RecName: Full=Probable rRNA maturation factor gi|226706184|sp|B7HPK2|RRMF_BACC7 RecName: Full=Probable rRNA maturation factor gi|254803861|sp|B9IY70|RRMF_BACCQ RecName: Full=Probable rRNA maturation factor gi|254803907|sp|C1ESJ7|RRMF_BACC3 RecName: Full=Probable rRNA maturation factor gi|254803928|sp|C3P8K9|RRMF_BACAA RecName: Full=Probable rRNA maturation factor gi|254803930|sp|C3L5Q6|RRMF_BACAC RecName: Full=Probable rRNA maturation factor gi|30259031|gb|AAP28236.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. Ames] gi|47504972|gb|AAT33648.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. 'Ames Ancestor'] gi|49181125|gb|AAT56501.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. Sterne] gi|49330387|gb|AAT61033.1| conserved hypothetical protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974670|gb|AAU16220.1| conserved hypothetical protein [Bacillus cereus E33L] gi|118418697|gb|ABK87116.1| conserved hypothetical protein [Bacillus thuringiensis str. Al Hakam] gi|164712194|gb|EDR17731.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0488] gi|167513396|gb|EDR88766.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0193] gi|167530127|gb|EDR92862.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0442] gi|170127612|gb|EDS96485.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0389] gi|170668619|gb|EDT19365.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0465] gi|172081565|gb|EDT66637.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0174] gi|190561877|gb|EDV15846.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis Tsiankovskii-I] gi|195992910|gb|EDX56869.1| conserved hypothetical protein TIGR00043 [Bacillus cereus W] gi|196022760|gb|EDX61441.1| conserved hypothetical protein TIGR00043 [Bacillus cereus 03BB108] gi|196029906|gb|EDX68507.1| conserved hypothetical protein TIGR00043 [Bacillus cereus NVH0597-99] gi|206743371|gb|EDZ54809.1| conserved hypothetical protein TIGR00043 [Bacillus cereus H3081.97] gi|217066303|gb|ACJ80553.1| conserved hypothetical protein TIGR00043 [Bacillus cereus AH187] gi|218537495|gb|ACK89893.1| conserved hypothetical protein TIGR00043 [Bacillus cereus AH820] gi|221241806|gb|ACM14516.1| Predicted metal-dependent hydrolase [Bacillus cereus Q1] gi|225787544|gb|ACO27761.1| conserved hypothetical protein TIGR00043 [Bacillus cereus 03BB102] gi|227007063|gb|ACP16806.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. CDC 684] gi|229265844|gb|ACQ47481.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0248] gi|300377964|gb|ADK06868.1| protein of unknown function UPF0054 [Bacillus cereus biovar anthracis str. CI] gi|324328207|gb|ADY23467.1| metal-binding heat shock protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 156 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 14/158 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + E +E L + KA E+ ELS+ F D+ RI +N Sbjct: 5 IDFIDETEEVKEEYVN--LIREILGKAAQM------EKIEDGAELSVTFVDNERIREINR 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 +YR D+PT+V+SF MLGD++++ + +A G F+ L Sbjct: 57 DYRDKDQPTDVISFAMEEMGEGEMEIVGVEMPRMLGDLIISIPRAKEQAEEYGHSFDREL 116 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 117 GFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 154 >gi|293376336|ref|ZP_06622573.1| metalloprotein, YbeY family [Turicibacter sanguinis PC909] gi|325843425|ref|ZP_08167983.1| translation metalloprotein YbeY [Turicibacter sp. HGF1] gi|292645025|gb|EFF63098.1| metalloprotein, YbeY family [Turicibacter sanguinis PC909] gi|325489347|gb|EGC91721.1| translation metalloprotein YbeY [Turicibacter sp. HGF1] Length = 157 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 7/141 (4%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 E + + V + + E +E S +F D+ +I +N YR D T+V++F Sbjct: 16 ERYEQMIERVVVETLKQENLAHE-FIECSFIFVDNEQIREINANYRQKDAVTDVITFAIE 74 Query: 90 FASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 + MLGD+ ++ +A G F+ L L +HG LHLLGYDH+ Sbjct: 75 DETPGEIKIQGVPMPRMLGDVFISLPRTREQAERFGHSFDRELSFLAVHGCLHLLGYDHL 134 Query: 144 DDKDACVMEGLERSILEDLGI 164 ++ +M + +L LGI Sbjct: 135 VKEEEEIMFAKQEDVLNALGI 155 >gi|295424888|ref|ZP_06817603.1| metal-dependent hydrolase [Lactobacillus amylolyticus DSM 11664] gi|295065454|gb|EFG56347.1| metal-dependent hydrolase [Lactobacillus amylolyticus DSM 11664] Length = 185 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 17/177 (9%) Query: 1 MSVKKVNLPRLD-LQIAVENALWGDEIHLRTLCEVVFAKAVSNLIS--KGYFVKENIVEL 57 ++ K+ ++D ++I DE+ + + + L+ K K+N +E+ Sbjct: 2 LTKKRTQNAKMDPIEITYN-----DEVGFLNDDKRCWKDWIEKLLLLTKTKIGKKNNLEM 56 Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGDIVLAY 108 S+ F + R +N +YR D+PT+V+SF D +GD+ + Sbjct: 57 SINFVNEDRSHEINLKYRDKDRPTDVISFAIEDGEDDLDMAAFADDPDFQEDIGDLFMCP 116 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +I+ + G F+ + ++HGFLHL GYDH+ ++A M G++ +LE+ G+ Sbjct: 117 SVIKRHSVEYGTGFDREFGYTVVHGFLHLNGYDHIKPEEAKEMFGIQGKVLEEYGLP 173 >gi|291533049|emb|CBL06162.1| conserved hypothetical protein TIGR00043 [Megamonas hypermegale ART12/1] Length = 159 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 4/143 (2%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 + E + + G + E+S+ FTD+ I +N EYR +D+PT+V+SF Sbjct: 15 ENLEVDEKLSDTVKEAVEKVGQLYALDNAEVSITFTDNEHIHEINREYRKVDRPTDVISF 74 Query: 87 PTAFASSDGCSSL----MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 MLGDI+++ E +A G + L +HG LHLLGYDH Sbjct: 75 ALNEGDEPNIEGEIPVNMLGDIIISVEKAIEQAGDYGHSIRREIAFLTVHGMLHLLGYDH 134 Query: 143 VDDKDACVMEGLERSILEDLGIN 165 +++ D M E ++E LGI+ Sbjct: 135 IEEADRVEMRKEEDFVMEQLGIS 157 >gi|239941042|ref|ZP_04692979.1| putative metalloprotease [Streptomyces roseosporus NRRL 15998] gi|239987521|ref|ZP_04708185.1| putative metalloprotease [Streptomyces roseosporus NRRL 11379] gi|291444482|ref|ZP_06583872.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291347429|gb|EFE74333.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 165 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 17/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALARMRIHPLS----------ELSVIVVDTDAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-----GCSSLMLGDIVLAYEIIEIEANV--LGKEFE 123 + ++ + PT+V+SFP +LGDIVL E+ + + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEVAKKQGEEAPTQHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L L +HG LHLLGYDH + + M GL+ +I Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAI 145 >gi|149907592|ref|ZP_01896339.1| hypothetical protein PE36_06882 [Moritella sp. PE36] gi|149809262|gb|EDM69191.1| hypothetical protein PE36_06882 [Moritella sp. PE36] Length = 153 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 59/161 (36%), Positives = 85/161 (52%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA EN ++ V ++ E+++ D+ + L Sbjct: 5 LDLQIATENEQ---KLPTEAQLNAWLNAVVKRF--------QDSAEVTIRIVDNTESQQL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YRG DKPTNVLSFP +G +LGD+++ +++E EA K H H++ Sbjct: 54 NNDYRGKDKPTNVLSFPFEV--PEGIELDLLGDLIICKQVVEREAKEQQKPLTAHWAHMV 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+ D++A MEGLE I+ +L DPY + Sbjct: 112 IHGTLHLLGYDHIIDEEAEEMEGLETEIMLELEFEDPYITE 152 >gi|229169051|ref|ZP_04296767.1| metalloprotease [Bacillus cereus AH621] gi|228614460|gb|EEK71569.1| metalloprotease [Bacillus cereus AH621] Length = 143 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIV 105 E ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EEGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 141 >gi|167772060|ref|ZP_02444113.1| hypothetical protein ANACOL_03434 [Anaerotruncus colihominis DSM 17241] gi|167665858|gb|EDS09988.1| hypothetical protein ANACOL_03434 [Anaerotruncus colihominis DSM 17241] Length = 170 Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 7/148 (4%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 ++ + + ++ + ++ F E+S+ F ++ +I LN EYR D PT+ Sbjct: 13 QKDVKIPSGIRLLIRRCCHAVLVAENF--HESAEISVSFVNNEQIRQLNAEYRQKDAPTD 70 Query: 83 VLSFPT----AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 VLSFP + + +L LGDIV++ E +A + G + + L +H LHLL Sbjct: 71 VLSFPLGSGGKYDRNMETGALQLGDIVISVEKAVEQARMYGHSLQREIGFLTVHSMLHLL 130 Query: 139 GYDHVDDK-DACVMEGLERSILEDLGIN 165 GYDH + M E S+L LG+ Sbjct: 131 GYDHEAGGLEMVRMREKEESVLASLGLE 158 >gi|320010900|gb|ADW05750.1| protein of unknown function UPF0054 [Streptomyces flavogriseus ATCC 33331] Length = 165 Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 17/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALARMRIHPLS----------ELSVIVVDTAAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-----GCSSLMLGDIVLAYEIIEI--EANVLGKEFE 123 + ++ + PT+V+SFP +LGDIVL E+ + E + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEVAKKQGEDAETQHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L L +HG LHLLGYDH + + M GL+ +I Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAAMFGLQAAI 145 >gi|254411860|ref|ZP_05025636.1| conserved hypothetical protein TIGR00043, putative [Microcoleus chthonoplastes PCC 7420] gi|196181582|gb|EDX76570.1| conserved hypothetical protein TIGR00043, putative [Microcoleus chthonoplastes PCC 7420] Length = 169 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 9/142 (6%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E F++ + L EL+L TD I+ LN ++R ++PT+VLSF Sbjct: 29 EHWFSQWLETLHPDNP--PAPTHELTLRLTDDAEIQALNSQFRHKNQPTDVLSFAALEVD 86 Query: 93 SDGCSSLM-------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 S M LGD+V++ E +A G L L HG LHLLG+DH D+ Sbjct: 87 SPQIPPDMQAAESVYLGDLVISVETAYRQAQHQGHPLSIELAWLATHGLLHLLGWDHPDE 146 Query: 146 KDACVMEGLERSILEDLGINDP 167 + M ++++L+ + + P Sbjct: 147 ESLQRMLNQQQALLQIVNLTLP 168 >gi|239979364|ref|ZP_04701888.1| putative metalloprotease [Streptomyces albus J1074] gi|291451239|ref|ZP_06590629.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291354188|gb|EFE81090.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 165 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 17/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D +E L Sbjct: 1 MSIDVNNESGTEVDERAILDIARYALARMRIHPLS----------ELSVIVVDPEAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANV--LGKEFE 123 + ++ + PT+V+SFP + +LGDIVL ++ + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPVKDEEEPPQGLLGDIVLCPDVARQQGQDAPTQHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L L +HG LHLLGYDH + + M GL+++I Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPGEKAEMFGLQQAI 145 >gi|228902826|ref|ZP_04066971.1| metalloprotease [Bacillus thuringiensis IBL 4222] gi|228967368|ref|ZP_04128403.1| metalloprotease [Bacillus thuringiensis serovar sotto str. T04001] gi|228792403|gb|EEM39970.1| metalloprotease [Bacillus thuringiensis serovar sotto str. T04001] gi|228856835|gb|EEN01350.1| metalloprotease [Bacillus thuringiensis IBL 4222] Length = 154 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 8/149 (5%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKE--NIVELSLVFTDSHRIETLNFEYRGIDKPT 81 D I + + + ++ K ++ + E+S+ F D+ RI +N +YR D+PT Sbjct: 4 DFIDETEEVKEAYMSLIREVLEKAAQMENIEDGAEVSVTFVDNERIREINRDYRDKDQPT 63 Query: 82 NVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 +V+SF MLGD++++ + +A G F+ L L +HGFL Sbjct: 64 DVISFAMEEMGEGEMEIVGAEMPRMLGDLIISIPRAKEQAEEYGHSFDRELGFLALHGFL 123 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGI 164 HLLGYDH+ +++ M G ++ ILE G+ Sbjct: 124 HLLGYDHMTEEEEKEMFGRQKEILEAFGL 152 >gi|302560725|ref|ZP_07313067.1| metalloprotease [Streptomyces griseoflavus Tu4000] gi|302478343|gb|EFL41436.1| metalloprotease [Streptomyces griseoflavus Tu4000] Length = 165 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 17/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALARMRIHPLS----------ELSVIVVDAGAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANV--LGKEFE 123 + ++ + PT+V+SFP D +LGDIVL E+ + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPSKDDDEPPQGLLGDIVLCPEVAARQGEEAPTRHTMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L L +HG LHLLGYDH + + M GL+ +I Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAI 145 >gi|262377255|ref|ZP_06070479.1| metal-dependent hydrolase [Acinetobacter lwoffii SH145] gi|262307708|gb|EEY88847.1| metal-dependent hydrolase [Acinetobacter lwoffii SH145] Length = 160 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 78/161 (48%), Gaps = 8/161 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L ++++ E+ L+ K V + E+ + D+ L Sbjct: 1 MKLSLSLQQDFQSPELVLK---RAYIKKVVETTLRHIGTQSN--CEIGIACVDNDESHKL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N EYR DKPTNVLSFP+ + +GD+V+ ++ EA+ GK H H Sbjct: 56 NLEYRDKDKPTNVLSFPSELPDEMAQFLDAFPIGDLVICIPVVLREASEQGKAPLTHFTH 115 Query: 129 LIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPY 168 +++HG LHL+GYDH D+DA ME +E IL LG +PY Sbjct: 116 MLVHGTLHLMGYDHETSDEDAEEMESIEIEILAKLGFENPY 156 >gi|299535808|ref|ZP_07049129.1| hypothetical protein BFZC1_07283 [Lysinibacillus fusiformis ZC1] gi|298729008|gb|EFI69562.1| hypothetical protein BFZC1_07283 [Lysinibacillus fusiformis ZC1] Length = 157 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E E+S+ F + I+ +N EYRG D+PT+V+SF +LGDI+ Sbjct: 36 EPETEVSVTFVTNKAIQDINREYRGKDQPTDVISFALEELGQGEMEVIFEGMPRVLGDII 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + + +A FE L L +HGFLHLLGYDH+ ++ VM + IL+ G+ Sbjct: 96 ISTDRAKEQAEEYNHSFERELGFLAVHGFLHLLGYDHMKPEEEKVMFAKQDEILQTYGL 154 >gi|269218582|ref|ZP_06162436.1| putative metalloprotease [Actinomyces sp. oral taxon 848 str. F0332] gi|269211693|gb|EEZ78033.1| putative metalloprotease [Actinomyces sp. oral taxon 848 str. F0332] Length = 164 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 16/155 (10%) Query: 11 LDLQIAVENALWG--DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 + + + E+ D + L V + + EL+++F D + Sbjct: 1 MSIDVNDESGFAPGIDLKEVSDLARFVLDRMRVH----------PAAELNVLFEDEESMA 50 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 L+ E+ +D PT+VLSFP + +LGDIV+ ++ +A G Sbjct: 51 RLHVEWMDLDGPTDVLSFPMDELRPAPIGEEPREGVLGDIVVCPQVAARQAYTAGHAVAE 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 ++ L+ HG LHLLGYDH ++ + M L+R +L Sbjct: 111 EVLLLVTHGILHLLGYDHAEEDERREMFDLQRQLL 145 >gi|297199578|ref|ZP_06916975.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] gi|197713494|gb|EDY57528.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] Length = 165 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 17/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALARMRIHPLS----------ELSVIVVDTDAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEA--NVLGKEFE 123 + ++ + PT+V+SFP D +LGDIVL E+ + + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPSKDDDEPPQGLLGDIVLCPEVAKRQGEEAETQHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L L +HG LHLLGYDH + + M GL+ +I Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAI 145 >gi|293366469|ref|ZP_06613146.1| metal-dependent hydrolase [Staphylococcus epidermidis M23864:W2(grey)] gi|291319238|gb|EFE59607.1| metal-dependent hydrolase [Staphylococcus epidermidis M23864:W2(grey)] gi|329735371|gb|EGG71663.1| translation metalloprotein YbeY [Staphylococcus epidermidis VCU045] Length = 155 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 5/127 (3%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-----DGCS 97 +K N ELS+ F D I+ +N YR DK T+V+SF D Sbjct: 26 TFAKKKENIHNDAELSVTFVDKDEIQNINKVYRDKDKVTDVISFALEEDEPEIDFNDFDI 85 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 +LGDI++ ++ + ++ G FE L L +HGFLHLLGYDH++D D M G + + Sbjct: 86 PRVLGDIIICRDVAKEQSESYGHSFERELGFLALHGFLHLLGYDHMNDNDEKEMFGRQDA 145 Query: 158 ILEDLGI 164 IL + G+ Sbjct: 146 ILNEFGL 152 >gi|258516221|ref|YP_003192443.1| putative metalloprotease [Desulfotomaculum acetoxidans DSM 771] gi|257779926|gb|ACV63820.1| protein of unknown function UPF0054 [Desulfotomaculum acetoxidans DSM 771] Length = 154 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 3/113 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIE 112 E+SLV TD I LN +YRG+D+PT+VLSF + +LGD++++ E E Sbjct: 40 EVSLVLTDDRYIHELNRDYRGVDRPTDVLSFAQNEGEQLQAAEEAEELLGDVIISLETAE 99 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE L +HG LHLL YDH++++D +M E + + + Sbjct: 100 RQAEEYGHSFEREAAFLTVHGVLHLLAYDHIEEEDRVIMRSKEEEAMSRMDLP 152 >gi|306836631|ref|ZP_07469597.1| metalloprotease [Corynebacterium accolens ATCC 49726] gi|304567461|gb|EFM43060.1| metalloprotease [Corynebacterium accolens ATCC 49726] Length = 206 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 61/161 (37%), Gaps = 20/161 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++ E+ + E + S G E ++ D IE L Sbjct: 1 MSIEFLNESG-------FDGVNEEMLIDVASYTF--GAMDINPDAECTITCVDLKSIEDL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-----------GCSSLMLGDIVLAYEIIEIEANVLG 119 + + ++ PT+V+SFP + MLGDIVL E +A+ G Sbjct: 52 HIRWMDLEGPTDVMSFPMDELTPGATSGGGRPDAADPGPSMLGDIVLCPEFALRQADAAG 111 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + L L +HG LHLLGYDH + M + +L Sbjct: 112 HSLGHELALLTVHGCLHLLGYDHATAAEEKEMFARQNELLA 152 >gi|227503130|ref|ZP_03933179.1| metalloprotease [Corynebacterium accolens ATCC 49725] gi|227076191|gb|EEI14154.1| metalloprotease [Corynebacterium accolens ATCC 49725] Length = 206 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 61/161 (37%), Gaps = 20/161 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++ E+ + E + S G E ++ D IE L Sbjct: 1 MSIEFLNESG-------FDGVNEEMLIDVASYTF--GAMDINPAAECTITCVDLKSIEDL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-----------GCSSLMLGDIVLAYEIIEIEANVLG 119 + + ++ PT+V+SFP + MLGDIVL E +A+ G Sbjct: 52 HIRWMDLEGPTDVMSFPMDELTPGATSGGGRPDAADPGPAMLGDIVLCPEFALRQADAAG 111 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + L L +HG LHLLGYDH + M + +L Sbjct: 112 HSLGHELALLTVHGCLHLLGYDHATAAEEKEMFARQNELLA 152 >gi|227874777|ref|ZP_03992930.1| metalloprotease [Mobiluncus mulieris ATCC 35243] gi|269976805|ref|ZP_06183780.1| putative metalloprotease [Mobiluncus mulieris 28-1] gi|306818070|ref|ZP_07451801.1| probable metalloprotease [Mobiluncus mulieris ATCC 35239] gi|227844552|gb|EEJ54708.1| metalloprotease [Mobiluncus mulieris ATCC 35243] gi|269935002|gb|EEZ91561.1| putative metalloprotease [Mobiluncus mulieris 28-1] gi|304649034|gb|EFM46328.1| probable metalloprotease [Mobiluncus mulieris ATCC 35239] Length = 150 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 14/156 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E D L + E++L+ D + L Sbjct: 1 MSVEVNNETEWDLDATEFVALISFCLEQ----------LYVSPAAEVNLMMVDMATMTDL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL----MLGDIVLAYEIIEIEANVLGKEFENHL 126 + + + PT+VLSFP + MLGDIVL ++ +A G + Sbjct: 51 HIRWMDLPGPTDVLSFPMDELTPGQEGQPSAGGMLGDIVLCPDVAAEQARDAGHSAVEEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L +HG LHLLG+DHV +++ M L+R +L Sbjct: 111 LLLTVHGLLHLLGFDHVTEEEEKTMFTLQRRLLLSF 146 >gi|221310456|ref|ZP_03592303.1| putative metalloprotease [Bacillus subtilis subsp. subtilis str. 168] gi|221314779|ref|ZP_03596584.1| putative metalloprotease [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319702|ref|ZP_03600996.1| putative metalloprotease [Bacillus subtilis subsp. subtilis str. JH642] gi|221323979|ref|ZP_03605273.1| putative metalloprotease [Bacillus subtilis subsp. subtilis str. SMY] gi|255767580|ref|NP_390410.2| metalloprotease [Bacillus subtilis subsp. subtilis str. 168] gi|321312015|ref|YP_004204302.1| metal-binding heat shock protein [Bacillus subtilis BSn5] gi|251757429|sp|P46347|RRMF_BACSU RecName: Full=Probable rRNA maturation factor gi|225185208|emb|CAB14461.2| putative metal-dependent hydrolase [Bacillus subtilis subsp. subtilis str. 168] gi|320018289|gb|ADV93275.1| metal-binding heat shock protein [Bacillus subtilis BSn5] Length = 157 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 14/159 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I E +E+ E + + ++ E+S+ + I +N Sbjct: 5 IDIVDETGSVSEEMLKE--VENLLQ------FAAEREGVQDQAEVSVTIVSNDDIHQINK 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 EYRG D PT+V+SF +LGDI+++ + +A F+ L Sbjct: 57 EYRGKDAPTDVISFALEEEGEGEIEIVGAEMPPVLGDIIISADRTREQAEEYNHSFKREL 116 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L +HGFLHLLGYDH+ ++ M ++ +L+ G+ Sbjct: 117 GFLAVHGFLHLLGYDHMTKEEEEEMFTKQKELLDAYGLK 155 >gi|160933318|ref|ZP_02080706.1| hypothetical protein CLOLEP_02163 [Clostridium leptum DSM 753] gi|156867195|gb|EDO60567.1| hypothetical protein CLOLEP_02163 [Clostridium leptum DSM 753] Length = 169 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 8/158 (5%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +++ + N+ E+ + T ++ + + ++ F E+S+ F ++ +I LN Sbjct: 4 KIRVIISNS--QKEVKIPTGLRMLVRRCCNAVLRMENFQ--GAAEVSVTFANNEQIHELN 59 Query: 72 FEYRGIDKPTNVLSFPTAFA----SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 +R +D PT+VLSFP ++ +LGDIV++ E +A G + + Sbjct: 60 KMHRNVDAPTDVLSFPMGEDGKYDIDPATNAKILGDIVISMEKAVEQAERFGHTLQREVG 119 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +L H LHLLGYDH + + M E ++ LG+ Sbjct: 120 YLTAHSMLHLLGYDHEEPLEKVHMREKEELVMTQLGLP 157 >gi|332981673|ref|YP_004463114.1| hypothetical protein Mahau_1094 [Mahella australiensis 50-1 BON] gi|332699351|gb|AEE96292.1| protein of unknown function UPF0054 [Mahella australiensis 50-1 BON] Length = 161 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 18/165 (10%) Query: 13 LQIAVENALWGDEI--HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + I +++ EI + L E V +++ E +E+S++ D+ +I+ L Sbjct: 1 MNILIDDRQSVMEIRDDVYDLLEQVVKRSIE------LEGLEPDIEVSIILIDNEQIKEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSS----------LMLGDIVLAYEIIEIEANVLGK 120 N ++RGID+ T+VLSFP SD L+LGDI ++ E +A G Sbjct: 55 NRDFRGIDRETDVLSFPAIDYESDEGEPVEDINMDTGDLILGDIAISVEKAAQQAEEYGH 114 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 F + L +HG HLLGYDH D+++A +M E +L LG+ Sbjct: 115 SFYREMGFLTVHGMFHLLGYDHEDEEEATIMRQREEMVLSSLGLE 159 >gi|150390781|ref|YP_001320830.1| hypothetical protein Amet_3031 [Alkaliphilus metalliredigens QYMF] gi|172052485|sp|A6TSK3|RRMF_ALKMQ RecName: Full=Probable rRNA maturation factor gi|149950643|gb|ABR49171.1| protein of unknown function UPF0054 [Alkaliphilus metalliredigens QYMF] Length = 155 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 6/156 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + ++N ++ + ++ KAV + S Y + E+SL F + I+ L Sbjct: 1 MPVSLVIDNR--QKQVEIEQKLIMLLEKAV--ITSLAYEGWDPDYEVSLSFVSNKEIQNL 56 Query: 71 NFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N YRG D T+VLSFP + +LGD+V++ E +A FE + Sbjct: 57 NRTYRGKDYATDVLSFPLVDDTDGFPMGEEKLLGDVVISVEKAVEQAKEYQHSFEREMGF 116 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L++H HL+GYDH+++ +A M E +L ++G+ Sbjct: 117 LMVHSLFHLMGYDHLEETEAQEMRKREEIVLTEMGL 152 >gi|319400906|gb|EFV89125.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909] Length = 155 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 5/127 (3%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-----DGCS 97 +K N ELS+ F D I+ +N YR DK T+V+SF D Sbjct: 26 TFAKKKENIHNDAELSVTFVDKEEIQNINKVYRDKDKVTDVISFALEEDEPEIDFNDFEI 85 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 +LGDI++ ++ + +A G FE L L +HGFLHLLGYDH++D D M G + + Sbjct: 86 PRVLGDIIICTDVAKEQAESYGHSFERELGFLALHGFLHLLGYDHMNDNDEKEMFGRQDA 145 Query: 158 ILEDLGI 164 IL + G+ Sbjct: 146 ILNEFGL 152 >gi|17227767|ref|NP_484315.1| putative metalloprotease [Nostoc sp. PCC 7120] gi|26006906|sp|Q8Z032|RRMF_NOSS1 RecName: Full=Probable rRNA maturation factor gi|17135249|dbj|BAB77795.1| all0271 [Nostoc sp. PCC 7120] Length = 184 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 7/142 (4%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + F + + L S E+ L TD I+ +N +YR +KPT+VL+F Sbjct: 40 PATWQDWFHRWLEILDSS--LPPAPSYEIGLRLTDDTEIQAINAQYRQQNKPTDVLAFAA 97 Query: 89 AFASSDGC-----SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 L LGDIV++ + +A L L HG LHLLG+DH Sbjct: 98 LEVDLPQNPEMVAEPLYLGDIVVSINTAQRQAGQQEHSLSTELAWLTAHGLLHLLGWDHP 157 Query: 144 DDKDACVMEGLERSILEDLGIN 165 D++ M + +LE +GIN Sbjct: 158 DEESLIAMLQQQVVLLEAIGIN 179 >gi|239827762|ref|YP_002950386.1| metalloprotease [Geobacillus sp. WCH70] gi|259646848|sp|C5D4S8|RRMF_GEOSW RecName: Full=Probable rRNA maturation factor gi|239808055|gb|ACS25120.1| protein of unknown function UPF0054 [Geobacillus sp. WCH70] Length = 156 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 14/160 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L++ E E + +A + ++ + E+ + F D+ RI + Sbjct: 3 LNIDFIDETNEVTKEQMNIIEQLLNYAAEIEHV--------PSGAEVGISFVDNERIRII 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFEN 124 N +YRG D+PT+V+SF +LGDI+++ + +A G F Sbjct: 55 NRDYRGKDQPTDVISFALEEKGEGEVEIVDADIPPLLGDIIISIPKAKEQAKEYGHSFMR 114 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L +HGFLHLLGYDH +++ +M ++ ILE G+ Sbjct: 115 ELGFLAVHGFLHLLGYDHKTEEEEKIMFSKQKDILERYGL 154 >gi|1303823|dbj|BAA12479.1| YqfG [Bacillus subtilis] Length = 157 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 14/159 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I E +E+ E + + ++ E+S+ + I +N Sbjct: 5 IDIVDETGSVSEEMLKE--VENLLQ------FAAEREGVQDQAEVSVTIVSNDDIHQINK 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 EYRG D PT+V+SF +LG+I+++ + +A F+ L Sbjct: 57 EYRGKDAPTDVISFALEEEGEGEIEIVGAEMPPVLGNIIISADRTREQAEEYNHSFKREL 116 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L +HGFLHLLGYDH+ ++ M ++ +L+ G+ Sbjct: 117 GFLAVHGFLHLLGYDHMTKEEEEEMFTKQKELLDAYGLK 155 >gi|228910137|ref|ZP_04073957.1| metalloprotease [Bacillus thuringiensis IBL 200] gi|228849654|gb|EEM94488.1| metalloprotease [Bacillus thuringiensis IBL 200] Length = 154 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 14/160 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + E +E +L V KA E E+S+ F D+ RI + Sbjct: 1 MLIDFIDETEEVKEEY--MSLIREVLEKAAQM------ENIEGGAEVSVTFVDNERIREI 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 N +YR D+PT+V+SF MLGD++++ + +A G F+ Sbjct: 53 NRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLIISIPRAKEQAEEYGHSFDR 112 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 113 ELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 152 >gi|170078371|ref|YP_001735009.1| hypothetical protein SYNPCC7002_A1764 [Synechococcus sp. PCC 7002] gi|238692816|sp|B1XPN9|RRMF_SYNP2 RecName: Full=Probable rRNA maturation factor gi|169886040|gb|ACA99753.1| conserved hypothetical protein (TIGR00043) [Synechococcus sp. PCC 7002] Length = 163 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 9/159 (5%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISK--GYFVKENIVELSLVFTDSHR 66 P L+ +I VENA + L L + + + + + EL+L FT Sbjct: 3 PVLECEIFVENA---SGLELPELAIAPWENHLQRWLPELTAALPPADGYELTLRFTTDAE 59 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFA----SSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 I LN +YR D+PT+VLSF L LGDI+++ E + +A Sbjct: 60 IHNLNHQYRHKDQPTDVLSFAALEDNFASPLPPGEPLYLGDIIVSVETAQRQAQERQHSL 119 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + L L+ HG LHLLG+DH D+ M + +L + Sbjct: 120 QTELGWLVSHGLLHLLGWDHPDEARLIEMLDRQAVLLRN 158 >gi|27468175|ref|NP_764812.1| hypothetical protein SE1257 [Staphylococcus epidermidis ATCC 12228] gi|251810987|ref|ZP_04825460.1| metal-dependent hydrolase [Staphylococcus epidermidis BCM-HMP0060] gi|282876004|ref|ZP_06284871.1| metalloprotein, YbeY/ UPF0054family [Staphylococcus epidermidis SK135] gi|29428185|sp|Q8CSD3|RRMF_STAES RecName: Full=Probable rRNA maturation factor gi|27315721|gb|AAO04856.1|AE016748_90 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|251805497|gb|EES58154.1| metal-dependent hydrolase [Staphylococcus epidermidis BCM-HMP0060] gi|281295029|gb|EFA87556.1| metalloprotein, YbeY/ UPF0054family [Staphylococcus epidermidis SK135] gi|329725400|gb|EGG61883.1| translation metalloprotein YbeY [Staphylococcus epidermidis VCU144] gi|329737264|gb|EGG73518.1| translation metalloprotein YbeY [Staphylococcus epidermidis VCU028] Length = 155 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 5/127 (3%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-----DGCS 97 +K N ELS+ F D I+ +N YR DK T+V+SF D Sbjct: 26 TFAKKKENIHNDAELSVTFVDKDEIQNINKVYRDKDKVTDVISFALEEDEPEIDFNDFDI 85 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 +LGDI++ ++ + ++ G FE L L +HGFLHLLGYDH++D D M G + + Sbjct: 86 PRVLGDIIICTDVAKEQSESYGHSFERELGFLALHGFLHLLGYDHMNDNDEKEMFGRQDA 145 Query: 158 ILEDLGI 164 IL + G+ Sbjct: 146 ILNEFGL 152 >gi|329924060|ref|ZP_08279323.1| translation metalloprotein YbeY [Paenibacillus sp. HGF5] gi|328940899|gb|EGG37207.1| translation metalloprotein YbeY [Paenibacillus sp. HGF5] Length = 165 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 19/168 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + LQ+A W +E + E + A + L G E+ L F D I L Sbjct: 1 MSLQLA-----WNNEQEDFQISEELIALLEAILQKAGEAEGVTDGEVDLTFVDDEGIHEL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS--------------SLMLGDIVLAYEIIEIEAN 116 N EYRGID+PT+VLSF ++D +LGDI+++ ++++ Sbjct: 56 NREYRGIDRPTDVLSFAMNEITNDELEIIYELEEGEELESVPDVLGDIIISVPRAKLQSE 115 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G E L L +HGFLHLLGYDH D+ M G + ++L ++G+ Sbjct: 116 EYGHSLERELGFLFVHGFLHLLGYDHQDEASEAEMMGKQEAVLAEVGL 163 >gi|153001814|ref|YP_001367495.1| putative metalloprotease [Shewanella baltica OS185] gi|304410290|ref|ZP_07391909.1| protein of unknown function UPF0054 [Shewanella baltica OS183] gi|307301999|ref|ZP_07581757.1| protein of unknown function UPF0054 [Shewanella baltica BA175] gi|166229104|sp|A6WRJ3|RRMF_SHEB8 RecName: Full=Probable rRNA maturation factor gi|151366432|gb|ABS09432.1| protein of unknown function UPF0054 [Shewanella baltica OS185] gi|304351699|gb|EFM16098.1| protein of unknown function UPF0054 [Shewanella baltica OS183] gi|306914037|gb|EFN44458.1| protein of unknown function UPF0054 [Shewanella baltica BA175] Length = 153 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 86/159 (54%), Gaps = 10/159 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDL + +++A D + + A+ N N EL++ DS + L Sbjct: 3 LDLALDIQHATTCDWLPTDEQFALWVTTAIGN--------SMNEAELTIRIVDSRESQML 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP + +LGD+V+ ++E EA K E H H++ Sbjct: 55 NSTYRGKDKPTNVLSFPFE--APPEIELPLLGDLVICAAVVENEAREQQKTLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D++A ME LE ++E LG DPY+ Sbjct: 113 VHGCLHLLGYDHIEDEEAEEMESLETQLIEGLGFTDPYK 151 >gi|57867019|ref|YP_188713.1| hypothetical protein SERP1137 [Staphylococcus epidermidis RP62A] gi|62901408|sp|Q5HNX7|RRMF_STAEQ RecName: Full=Probable rRNA maturation factor gi|57637677|gb|AAW54465.1| conserved hypothetical protein TIGR00043 [Staphylococcus epidermidis RP62A] Length = 155 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 5/127 (3%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-----DGCS 97 +K N ELS+ F D I+ +N YR DK T+V+SF D Sbjct: 26 TFAKKKENIHNDAELSVTFVDKDEIQNINKVYRDKDKVTDVISFALEEDEPEIDFNDFDI 85 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 +LGDI++ ++ + ++ G FE L L +HGFLHLLGYDH++D D M G + + Sbjct: 86 PRVLGDIIICTDVAKEQSESYGHSFERELGFLALHGFLHLLGYDHMNDNDEKEMFGRQDA 145 Query: 158 ILEDLGI 164 IL + G+ Sbjct: 146 ILNEFGL 152 >gi|242373875|ref|ZP_04819449.1| metal-dependent hydrolase [Staphylococcus epidermidis M23864:W1] gi|242348429|gb|EES40031.1| metal-dependent hydrolase [Staphylococcus epidermidis M23864:W1] Length = 155 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 5/127 (3%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS----- 97 +K E+ ELS+ F D I+ +N YR DK T+V+SF D Sbjct: 26 TFAKKQENIESDAELSVTFVDKDEIQNINKVYRDKDKVTDVISFALEEDEPDIDMNDLEI 85 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 +LGDI++ ++ + +A G FE L L +HGFLHLLGYDH+ + D M G + + Sbjct: 86 PRVLGDIIICTDVAQEQAESYGHSFERELGFLALHGFLHLLGYDHMTEDDEKEMFGRQDA 145 Query: 158 ILEDLGI 164 IL G+ Sbjct: 146 ILNSYGL 152 >gi|228929346|ref|ZP_04092371.1| metalloprotease [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935623|ref|ZP_04098438.1| metalloprotease [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948016|ref|ZP_04110302.1| metalloprotease [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228987553|ref|ZP_04147672.1| metalloprotease [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229093372|ref|ZP_04224479.1| metalloprotease [Bacillus cereus Rock3-42] gi|229123841|ref|ZP_04253035.1| metalloprotease [Bacillus cereus 95/8201] gi|229141040|ref|ZP_04269583.1| metalloprotease [Bacillus cereus BDRD-ST26] gi|229157917|ref|ZP_04285991.1| metalloprotease [Bacillus cereus ATCC 4342] gi|229186542|ref|ZP_04313704.1| metalloprotease [Bacillus cereus BGSC 6E1] gi|229198429|ref|ZP_04325135.1| metalloprotease [Bacillus cereus m1293] gi|228585129|gb|EEK43241.1| metalloprotease [Bacillus cereus m1293] gi|228596973|gb|EEK54631.1| metalloprotease [Bacillus cereus BGSC 6E1] gi|228625576|gb|EEK82329.1| metalloprotease [Bacillus cereus ATCC 4342] gi|228642473|gb|EEK98761.1| metalloprotease [Bacillus cereus BDRD-ST26] gi|228659662|gb|EEL15308.1| metalloprotease [Bacillus cereus 95/8201] gi|228690028|gb|EEL43829.1| metalloprotease [Bacillus cereus Rock3-42] gi|228772285|gb|EEM20732.1| metalloprotease [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228811706|gb|EEM58041.1| metalloprotease [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824063|gb|EEM69880.1| metalloprotease [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830360|gb|EEM75972.1| metalloprotease [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 143 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 6/121 (4%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGD 103 E+ ELS+ F D+ RI +N +YR D+PT+V+SF MLGD Sbjct: 21 KIEDGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGVEMPRMLGD 80 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 ++++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G Sbjct: 81 LIISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFG 140 Query: 164 I 164 + Sbjct: 141 L 141 >gi|282850279|ref|ZP_06259658.1| metalloprotein, YbeY/ UPF0054 family [Veillonella parvula ATCC 17745] gi|282579772|gb|EFB85176.1| metalloprotein, YbeY/ UPF0054 family [Veillonella parvula ATCC 17745] Length = 158 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 14/165 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I+ + I + E V K + ++ E+S++ D+ +I L Sbjct: 1 MYINISYDEG-----IQEDSNIEAVIRKVCDEVSRVYGLEED---EMSILLCDNAKIHKL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 N EYRGID+PT+VLSF +LGD++++ E +A G FE L Sbjct: 53 NKEYRGIDRPTDVLSFALNEGDDYEGSEEEHHLLGDMIISLERTREQAIEYGHSFERELA 112 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI---NDPYE 169 +L H LH+LGYDH++D+D M E IL +LG + PY Sbjct: 113 YLTTHSCLHILGYDHMNDEDKKEMRIEEEFILGNLGYVREDAPYN 157 >gi|284009229|emb|CBA76319.1| conserved hypothetical protein [Arsenophonus nasoniae] Length = 164 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + LDLQ+A ++ DE + E + E+++ D Sbjct: 10 LQSIILDLQLACSDHNGLPDETTFQHWLEAFL------------PQFQAESEITIRIVDI 57 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + LN YRG D PTNVLSFP + D +LGD+V+ +++E EA K + Sbjct: 58 AESQYLNLTYRGKDNPTNVLSFPFE--ALDNIPLPLLGDLVICRQVVEKEAIEQHKTLDA 115 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H++IHG LHLLGYDH +D +A ME +E I++ LG DPY+ + Sbjct: 116 HWAHMVIHGCLHLLGYDHQNDFEAEEMETIETEIMQKLGYPDPYQHE 162 >gi|229104934|ref|ZP_04235591.1| metalloprotease [Bacillus cereus Rock3-28] gi|228678508|gb|EEL32728.1| metalloprotease [Bacillus cereus Rock3-28] Length = 143 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIV 105 E ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EEGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGTEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 141 >gi|229098774|ref|ZP_04229712.1| metalloprotease [Bacillus cereus Rock3-29] gi|229117799|ref|ZP_04247164.1| metalloprotease [Bacillus cereus Rock1-3] gi|228665662|gb|EEL21139.1| metalloprotease [Bacillus cereus Rock1-3] gi|228684618|gb|EEL38558.1| metalloprotease [Bacillus cereus Rock3-29] Length = 143 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIV 105 E ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EEGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 141 >gi|160876547|ref|YP_001555863.1| putative metalloprotease [Shewanella baltica OS195] gi|189040143|sp|A9KZZ5|RRMF_SHEB9 RecName: Full=Probable rRNA maturation factor gi|160862069|gb|ABX50603.1| protein of unknown function UPF0054 [Shewanella baltica OS195] gi|315268741|gb|ADT95594.1| protein of unknown function UPF0054 [Shewanella baltica OS678] Length = 153 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 86/159 (54%), Gaps = 10/159 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDL + +++A D + + A+ N N EL++ DS + L Sbjct: 3 LDLALDIQHATTCDWLPTDEQFALWVTNAIGN--------SMNEAELTIRIVDSRESQML 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP + +LGD+V+ ++E EA K E H H++ Sbjct: 55 NSTYRGKDKPTNVLSFPFE--APPEIELPLLGDLVICAAVVENEAREQQKTLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D++A ME LE ++E LG DPY+ Sbjct: 113 VHGCLHLLGYDHIEDEEAEEMESLETQLIEGLGFTDPYK 151 >gi|30022381|ref|NP_834012.1| putative metalloprotease [Bacillus cereus ATCC 14579] gi|33301866|sp|Q812T1|RRMF_BACCR RecName: Full=Probable rRNA maturation factor gi|29897939|gb|AAP11213.1| hypothetical Metal-Binding Protein [Bacillus cereus ATCC 14579] Length = 156 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 14/158 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + E +E +L V KA E+ E+S+ F D+ RI +N Sbjct: 5 IDFIDETEEVKEEY--MSLIREVLEKAAQM------ENIEDGAEVSVTFVDNERIREINR 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 +YR D+PT+V+SF MLGD++++ + +A G F+ L Sbjct: 57 DYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLIISIPRAKEQAEEYGHSFDREL 116 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 117 GFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 154 >gi|229163248|ref|ZP_04291203.1| metalloprotease [Bacillus cereus R309803] gi|228620311|gb|EEK77182.1| metalloprotease [Bacillus cereus R309803] Length = 143 Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 8/142 (5%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + + K + E+ ELS+ F D+ RI +N +YR D+PT+V+SF Sbjct: 2 KEEYVNLIRKILEKAAQMEKI--EDGAELSVTFVDNERIREINRDYRDKDQPTDVISFAM 59 Query: 89 AFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 MLGD++++ + +A G F+ L L +HGFLHLLGYDH Sbjct: 60 EEMGEGEMEIVGAEMPRMLGDLIISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDH 119 Query: 143 VDDKDACVMEGLERSILEDLGI 164 + ++D M G ++ ILE G+ Sbjct: 120 MTEEDEKEMFGRQKEILEAFGL 141 >gi|261405613|ref|YP_003241854.1| hypothetical protein GYMC10_1764 [Paenibacillus sp. Y412MC10] gi|261282076|gb|ACX64047.1| protein of unknown function UPF0054 [Paenibacillus sp. Y412MC10] Length = 165 Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 19/168 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + LQ+A W +E + E + A + L G E+ L F D I L Sbjct: 1 MSLQLA-----WNNEQEDFQIGEELIALLEAILQKAGEAEGVTDGEVDLTFVDDEGIHEL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS--------------SLMLGDIVLAYEIIEIEAN 116 N EYRGID+PT+VLSF ++D +LGDI+++ ++++ Sbjct: 56 NREYRGIDRPTDVLSFAMNEITNDELEIIYELEEGEELESVPDVLGDIIISVPRAKLQSE 115 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G E L L +HGFLHLLGYDH D+ M G + ++L ++G+ Sbjct: 116 EYGHSLERELGFLFVHGFLHLLGYDHQDEASEAEMMGKQEAVLAEVGL 163 >gi|54310005|ref|YP_131025.1| putative metalloprotease [Photobacterium profundum SS9] gi|59799114|sp|Q6LNA3|RRMF_PHOPR RecName: Full=Probable rRNA maturation factor gi|46914444|emb|CAG21223.1| Putative predicted metal dependent hydrolase [Photobacterium profundum SS9] Length = 154 Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 60/161 (37%), Positives = 90/161 (55%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ A EN + + + F AV+ + ++ E+++ D + L Sbjct: 5 LDLQYATEN---QEGLPSEDKFQQWFEAAVT--------LFQSDAEITIRIVDVKESQAL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N EYRG DKPTNVLSFP + G +LGD+++ +++EIEA K H H++ Sbjct: 54 NLEYRGKDKPTNVLSFPFE--APPGIELDLLGDLIICRQVVEIEAKEQDKPLNAHWAHMV 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH++D++A ME LE I+E +G DP+ + Sbjct: 112 VHGTLHLLGYDHIEDEEAEEMEYLETEIIEKMGFADPFAAE 152 >gi|21220993|ref|NP_626772.1| putative metalloprotease [Streptomyces coelicolor A3(2)] gi|256787845|ref|ZP_05526276.1| putative metalloprotease [Streptomyces lividans TK24] gi|289771730|ref|ZP_06531108.1| conserved hypothetical protein [Streptomyces lividans TK24] gi|26006934|sp|Q9L2L4|RRMF_STRCO RecName: Full=Probable rRNA maturation factor gi|6723881|emb|CAB66427.1| conserved hypothetical protein SCC117.06 [Streptomyces coelicolor A3(2)] gi|289701929|gb|EFD69358.1| conserved hypothetical protein [Streptomyces lividans TK24] Length = 165 Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 17/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALARMRIHPLS----------ELSVIVVDAEAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM-----LGDIVLAYEIIEIEANV--LGKEFE 123 + ++ + PT+V+SFP LGDIVL E+ + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPSKDEEEAPQGLLGDIVLCPEVAAKQGAEAPTEHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L L +HG LHLLGYDH + + M GL+ +I Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAI 145 >gi|186475179|ref|YP_001856649.1| hypothetical protein Bphy_0410 [Burkholderia phymatum STM815] gi|238689444|sp|B2JD86|RRMF_BURP8 RecName: Full=Probable rRNA maturation factor gi|184191638|gb|ACC69603.1| protein of unknown function UPF0054 [Burkholderia phymatum STM815] Length = 153 Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 57/162 (35%), Positives = 79/162 (48%), Gaps = 14/162 (8%) Query: 9 PRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 P+L L + W + L L + A + + EL++ F D+ Sbjct: 5 PKLSLNLQFPAGKAWPEHKSL--LPKATVAAWIKAALFA-------DAELTVRFVDADEG 55 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 TLN YRG D TNVL+F A + D + GD++L ++E EAN GK H Sbjct: 56 RTLNRTYRGKDYATNVLTFAYAESEDD----PVTGDLILCCPVVEKEANEQGKPLGAHYA 111 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH D+ +A ME +E +L LG DPYE Sbjct: 112 HLLVHGTLHAQGYDHEDEDEAEEMEAIETEVLGKLGFPDPYE 153 >gi|228960568|ref|ZP_04122217.1| metalloprotease [Bacillus thuringiensis serovar pakistani str. T13001] gi|229048022|ref|ZP_04193598.1| metalloprotease [Bacillus cereus AH676] gi|229111776|ref|ZP_04241324.1| metalloprotease [Bacillus cereus Rock1-15] gi|229129580|ref|ZP_04258550.1| metalloprotease [Bacillus cereus BDRD-Cer4] gi|229146888|ref|ZP_04275253.1| metalloprotease [Bacillus cereus BDRD-ST24] gi|229152503|ref|ZP_04280695.1| metalloprotease [Bacillus cereus m1550] gi|228631111|gb|EEK87748.1| metalloprotease [Bacillus cereus m1550] gi|228636716|gb|EEK93181.1| metalloprotease [Bacillus cereus BDRD-ST24] gi|228653897|gb|EEL09765.1| metalloprotease [Bacillus cereus BDRD-Cer4] gi|228671770|gb|EEL27066.1| metalloprotease [Bacillus cereus Rock1-15] gi|228723479|gb|EEL74848.1| metalloprotease [Bacillus cereus AH676] gi|228799168|gb|EEM46136.1| metalloprotease [Bacillus thuringiensis serovar pakistani str. T13001] Length = 154 Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 14/160 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + E +E +L V KA E+ E+S+ F D+ RI + Sbjct: 1 MLIDFIDETEEVKEEY--MSLIREVLEKAAQM------ENIEDGAEVSVTFVDNERIREI 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 N +YR D+PT+V+SF MLGD++++ + +A G F+ Sbjct: 53 NRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLIISIPRAKEQAEEYGHSFDR 112 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 113 ELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 152 >gi|256396155|ref|YP_003117719.1| hypothetical protein Caci_7048 [Catenulispora acidiphila DSM 44928] gi|256362381|gb|ACU75878.1| protein of unknown function UPF0054 [Catenulispora acidiphila DSM 44928] Length = 159 Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 67/160 (41%), Gaps = 20/160 (12%) Query: 11 LDLQIAVENA----LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 + + IA E D L + V G + ELS++ D+ Sbjct: 1 MSIDIANETDYGTEQGVDAEELVGVARYVL----------GEMGIHPMAELSILLVDTAA 50 Query: 67 IETLNFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 +E L+ ++ PT+VLSFP + +LGD+VL E+ E + G Sbjct: 51 MEQLHIQWMDEPGPTDVLSFPMDELRPARAEDDNEPVPGLLGDVVLCPEVAERQGKDAGH 110 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 L L HG LHLLGYDH + ++ M GL++ +L Sbjct: 111 STAEELRLLTTHGILHLLGYDHAEPEEEAEMFGLQKQLLR 150 >gi|182438796|ref|YP_001826515.1| putative metalloprotease [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779451|ref|ZP_08238716.1| metalloprotease ybeY [Streptomyces cf. griseus XylebKG-1] gi|238689002|sp|B1VY47|RRMF_STRGG RecName: Full=Probable rRNA maturation factor gi|178467312|dbj|BAG21832.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659784|gb|EGE44630.1| metalloprotease ybeY [Streptomyces cf. griseus XylebKG-1] Length = 165 Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 17/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALARMRIHPLS----------ELSVIVVDTDAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-----GCSSLMLGDIVLAYEIIEIEANV--LGKEFE 123 + ++ + PT+V+SFP +LGDIVL E+ + + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEVAKKQGEEAPTQHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L L +HG LHLLGYDH + + M GL+ +I Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAI 145 >gi|218132189|ref|ZP_03460993.1| hypothetical protein BACPEC_00046 [Bacteroides pectinophilus ATCC 43243] gi|217992910|gb|EEC58910.1| hypothetical protein BACPEC_00046 [Bacteroides pectinophilus ATCC 43243] Length = 173 Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 77/172 (44%), Gaps = 24/172 (13%) Query: 11 LDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + I E + EI + V +A Y VE++++ TD+ I Sbjct: 1 MTINIDYETDIRIVPEIPEEEIINKVITQACD------YEKCPYEVEVNVLLTDNESIHE 54 Query: 70 LNFEYRGIDKPTNVLSFPT-----------------AFASSDGCSSLMLGDIVLAYEIIE 112 N EYRG+D PT+VLSFP L+LGDIV++ E + Sbjct: 55 TNREYRGVDAPTDVLSFPMIDYEAPADFAFLEDSPVEDYFDPDTGELLLGDIVISVEKVM 114 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G + L L+ H LHL GYDH++ +A VME + IL ++GI Sbjct: 115 EQAEKYGHSVKRELAFLVAHSMLHLFGYDHMEPDEAEVMEDKQNQILLNIGI 166 >gi|170025228|ref|YP_001721733.1| putative metalloprotease [Yersinia pseudotuberculosis YPIII] gi|238688388|sp|B1JG97|RRMF_YERPY RecName: Full=Probable rRNA maturation factor gi|169751762|gb|ACA69280.1| protein of unknown function UPF0054 [Yersinia pseudotuberculosis YPIII] Length = 157 Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQIA ++ E + E V + + + E+++ D Sbjct: 1 MSQVILDLQIACADSQGLPTEGDFQRWLEAVL------------PLFQPVSEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DK TNVLSFP + +LGD+++ +++E EA K Sbjct: 49 AESHDLNLTYRGKDKSTNVLSFPFE--APPEIELPLLGDLIICRQVVEKEAIEQEKALLA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH+DD +A ME +E I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIDDDEAEEMELIEIEIMHGLGYPDPYISE 153 >gi|242242843|ref|ZP_04797288.1| possible metal-dependent hydrolase [Staphylococcus epidermidis W23144] gi|242233706|gb|EES36018.1| possible metal-dependent hydrolase [Staphylococcus epidermidis W23144] Length = 155 Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 5/127 (3%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-----DGCS 97 +K N ELS+ D I+ +N YR DK T+V+SF D Sbjct: 26 TFAKKKENIHNDAELSVTLVDKEEIQNINKVYRDKDKVTDVISFALEEDEPEIDFNDFDI 85 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 +LGDI++ ++ + +A G FE L L +HGFLHLLGYDH++D D M G + + Sbjct: 86 PRVLGDIIICTDVAKEQAESYGHSFERELGFLALHGFLHLLGYDHMNDNDEKEMFGRQDA 145 Query: 158 ILEDLGI 164 IL + G+ Sbjct: 146 ILNEFGL 152 >gi|78213952|ref|YP_382731.1| hypothetical protein Syncc9605_2444 [Synechococcus sp. CC9605] gi|123577427|sp|Q3AGV6|RRMF_SYNSC RecName: Full=Probable rRNA maturation factor gi|78198411|gb|ABB36176.1| Protein of unknown function UPF0054 [Synechococcus sp. CC9605] Length = 166 Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 61/148 (41%), Gaps = 4/148 (2%) Query: 16 AVENALWGDEIHLRTLCEVVFAKAV--SNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 A E DE E +L + L L F D I LN Sbjct: 16 ASEIGDLLDETVWLQQLEHWLQIVCGDESLDCPTLVRSAEELSLGLRFIDDATIADLNST 75 Query: 74 YRGIDKPTNVLSFPTAFASSD--GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +R PT+VLSF + D S+ LGDIV++ E +A G + L L+ Sbjct: 76 WRQKTGPTDVLSFAALDDAGDWMEGPSIELGDIVVSLETARRQAQEQGHSLQQELRWLVS 135 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSIL 159 HG LHLLG+DH D+K M L+ +L Sbjct: 136 HGLLHLLGWDHPDEKSLATMLALQERLL 163 >gi|68171524|ref|ZP_00544904.1| Protein of unknown function UPF0054 [Ehrlichia chaffeensis str. Sapulpa] gi|88658303|ref|YP_507939.1| hypothetical protein ECH_1155 [Ehrlichia chaffeensis str. Arkansas] gi|123492551|sp|Q2GF44|RRMF_EHRCR RecName: Full=Probable rRNA maturation factor gi|67999052|gb|EAM85723.1| Protein of unknown function UPF0054 [Ehrlichia chaffeensis str. Sapulpa] gi|88599760|gb|ABD45229.1| conserved hypothetical protein TIGR00043 [Ehrlichia chaffeensis str. Arkansas] Length = 154 Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 82/156 (52%), Gaps = 8/156 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I + W + I+ F K + N + E +S+V ++ ++ LN+ Sbjct: 2 IEINIYYRKWYNIINKPK----SFIKKIINTSLIDLNIYEYKPTISVVLANNRLLQKLNY 57 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 EYR +KPTNVLSFP + LG+I ++ + + E+ L E+H H++IH Sbjct: 58 EYRKKNKPTNVLSFPY----NKLNKYCYLGEIFVSLDTLINESTDLNIPIEHHTSHMLIH 113 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 G LH+L Y+H + + +ME +E +L+ LGI +PY Sbjct: 114 GLLHILDYNHEEPLEQYIMESIEIKLLDKLGIKNPY 149 >gi|256851189|ref|ZP_05556578.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN] gi|260660613|ref|ZP_05861528.1| metal-dependent hydrolase [Lactobacillus jensenii 115-3-CHN] gi|282934655|ref|ZP_06339898.1| putative metalloprotease [Lactobacillus jensenii 208-1] gi|297206054|ref|ZP_06923449.1| metal-dependent hydrolase [Lactobacillus jensenii JV-V16] gi|256616251|gb|EEU21439.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN] gi|260548335|gb|EEX24310.1| metal-dependent hydrolase [Lactobacillus jensenii 115-3-CHN] gi|281301230|gb|EFA93531.1| putative metalloprotease [Lactobacillus jensenii 208-1] gi|297149180|gb|EFH29478.1| metal-dependent hydrolase [Lactobacillus jensenii JV-V16] Length = 174 Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 80/158 (50%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE + + K + +L+ +K K+N +E+S+ F D + +N +YRG Sbjct: 5 DITYNDETNFLADTSRDWRKWIMDLLLMAKKEISKDNNLEMSINFVDEDKSHQINRDYRG 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D + +GD+ + +I+ A G F+ Sbjct: 65 KDRPTDVISFAIEDGEEGVDLSSFIEDPDFTEDIGDLFMCISVIKRHAEEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HGFLHL GYDH++ +A M G++ +LE+ G+ Sbjct: 125 YTLVHGFLHLNGYDHIEPAEAKEMFGIQGKVLEEYGLP 162 >gi|311069133|ref|YP_003974056.1| putative metalloprotease [Bacillus atrophaeus 1942] gi|310869650|gb|ADP33125.1| putative metalloprotease [Bacillus atrophaeus 1942] Length = 157 Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 14/158 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I E +E+ E + + ++ E+S+ + I+ +N Sbjct: 5 IDIIDETESVAEEMLKE--VEKLLQ------FAAEREGVQDQAEVSVTIVTNDEIQQINK 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 EYRG D PT+V+SF D +LGDI+++ + +A G F L Sbjct: 57 EYRGKDTPTDVISFALEEEGEDEVEIVGAEMPPVLGDIIISADRTREQAEEYGHSFLREL 116 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L +HGFLHLLGYDH+ + M ++ +L++ G+ Sbjct: 117 GFLAVHGFLHLLGYDHMTKEQEEEMFTKQKDLLDNYGL 154 >gi|170782109|ref|YP_001710442.1| putative metalloprotease [Clavibacter michiganensis subsp. sepedonicus] gi|189038996|sp|B0RCR5|RRMF_CLAMS RecName: Full=Probable rRNA maturation factor gi|169156678|emb|CAQ01836.1| conserved hypothetical protein [Clavibacter michiganensis subsp. sepedonicus] Length = 153 Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I E+A+ DE ++ L EL++V D +E L Sbjct: 1 MSIEINNESAVEVDEPLIQRLATYALDT----------LHVHPDAELAIVMVDEGAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM----LGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ PT+VLSFP LGDIV+ ++ +A G + Sbjct: 51 HVQWMDEPGPTDVLSFPMDELRPGTEDRPTPAGLLGDIVVCPQVAAEQAVTAGHSTMEEI 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L HG LHLLG+DH + + M GL+R IL Sbjct: 111 LLLTAHGILHLLGFDHAEPDEEREMFGLQRDIL 143 >gi|120597877|ref|YP_962451.1| putative metalloprotease [Shewanella sp. W3-18-1] gi|146293951|ref|YP_001184375.1| putative metalloprotease [Shewanella putrefaciens CN-32] gi|145572750|sp|A1RGV2|RRMF_SHESW RecName: Full=Probable rRNA maturation factor gi|166200358|sp|A4Y9E3|RRMF_SHEPC RecName: Full=Probable rRNA maturation factor gi|120557970|gb|ABM23897.1| protein of unknown function UPF0054 [Shewanella sp. W3-18-1] gi|145565641|gb|ABP76576.1| protein of unknown function UPF0054 [Shewanella putrefaciens CN-32] gi|319427328|gb|ADV55402.1| protein of unknown function UPF0054 [Shewanella putrefaciens 200] Length = 153 Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 87/161 (54%), Gaps = 12/161 (7%) Query: 11 LDLQIA--VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 + L++A V+ A D + + A+ N + + EL++ DS + Sbjct: 1 MSLELALDVQYATTSDWLPTEEQLMLWAKTAIGNGMDR--------AELTIRIVDSRESQ 52 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YRG DKPTNVLSFP + +LGD+V+ ++E EA K E H H Sbjct: 53 MLNSTYRGKDKPTNVLSFPFE--APAEIELPLLGDLVICAAVVENEAREQNKTLEAHWAH 110 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +++HG LHLLGYDH++D++A ME LE ++E LG +PY+ Sbjct: 111 MVVHGCLHLLGYDHIEDEEAEEMESLETQLIESLGFTNPYK 151 >gi|229019527|ref|ZP_04176344.1| metalloprotease [Bacillus cereus AH1273] gi|229025769|ref|ZP_04182168.1| metalloprotease [Bacillus cereus AH1272] gi|228735477|gb|EEL86073.1| metalloprotease [Bacillus cereus AH1272] gi|228741783|gb|EEL91966.1| metalloprotease [Bacillus cereus AH1273] Length = 143 Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIV 105 E ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EEGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIIGAEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 141 >gi|16331480|ref|NP_442208.1| metalloprotease [Synechocystis sp. PCC 6803] gi|2496791|sp|Q55142|RRMF_SYNY3 RecName: Full=Probable rRNA maturation factor gi|1001136|dbj|BAA10278.1| slr0053 [Synechocystis sp. PCC 6803] Length = 179 Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 11/176 (6%) Query: 3 VKKVNLPRLDLQIAVENALWGDEI---HLRTLCEVVFAKAVSNLIS--KGYFVKENIVEL 57 + ++ ++ ++++++ L G + + L + + + EL Sbjct: 1 MAPTSVNKIAVELSLQTDLTGSAMASSGVEELLTNPWQGWCQRWLEYLADCLPPASSYEL 60 Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEII 111 +L+FT RI+ LN ++R DKPT+VL+F S + L LGDIV++ E Sbjct: 61 TLLFTGDRRIQELNRKFRHQDKPTDVLAFAALEGDFPLIESEETEEPLYLGDIVISLERA 120 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 + +A G + +V L HG LHLLG+DH D+ M + +L +G N P Sbjct: 121 DHQARERGHSAKLEVVWLTAHGLLHLLGWDHPDEASLTTMLSEQSHLLTLIGQNPP 176 >gi|260494090|ref|ZP_05814221.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] gi|260198236|gb|EEW95752.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] Length = 163 Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 1/135 (0%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-ASSD 94 + ++ + LSL+ TD+ I+ +N EYR D PT+V+SF + Sbjct: 29 LENYIKKVLELEEIESNRPLYLSLLLTDNRNIQVINREYRDKDAPTDVISFAYHETEDFN 88 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 LGDI+++ E +E +A+ FE +++ HG LH+LGYDH++++D +M Sbjct: 89 IGPYDTLGDIIISLERVEEQASEYNHSFEREFYYVLTHGILHILGYDHIEEEDKKIMRER 148 Query: 155 ERSILEDLGINDPYE 169 E +IL G Y+ Sbjct: 149 EEAILSSFGYTRDYK 163 >gi|116072020|ref|ZP_01469288.1| hypothetical protein BL107_07709 [Synechococcus sp. BL107] gi|116065643|gb|EAU71401.1| hypothetical protein BL107_07709 [Synechococcus sp. BL107] Length = 180 Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 4/138 (2%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 L+ E F ++ +L + V L L FTD I LN E+R PT+VLSF Sbjct: 32 LQQWIE--FIRSNPDLSCPSVVRQAPEVSLGLRFTDDAGITELNSEWRQRSGPTDVLSFA 89 Query: 88 TAFASSD--GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 + D +++ LGDI+++ + + +A L LI HG LHLLG+DH D+ Sbjct: 90 ALDDTPDWLEGAAVELGDIIVSLDTAQRQAQDHDHSLGYELHWLISHGLLHLLGWDHPDE 149 Query: 146 KDACVMEGLERSILEDLG 163 + M L+ +L+ G Sbjct: 150 RSLRAMLDLQERLLDSTG 167 >gi|254382694|ref|ZP_04998051.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194341596|gb|EDX22562.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 165 Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 17/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ + DE + + + + +S ELS++ D +E L Sbjct: 1 MSIDVNNESGIEVDEQAILDIARYALTRMRIHPLS----------ELSVIVVDEGAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-----GCSSLMLGDIVLAYEIIEIEANV--LGKEFE 123 + ++ + PT+V+SFP +LGDIVL E+ + + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEVAKKQGEDAPTQHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L L +HG LHLLGYDH + + M GL+ +I Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAI 145 >gi|296333310|ref|ZP_06875763.1| putative metalloprotease [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675185|ref|YP_003866857.1| putative metalloprotease [Bacillus subtilis subsp. spizizenii str. W23] gi|296149508|gb|EFG90404.1| putative metalloprotease [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413429|gb|ADM38548.1| putative metalloprotease [Bacillus subtilis subsp. spizizenii str. W23] Length = 157 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 14/159 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I E +E+ E + + +N E+S+ + I+ +N Sbjct: 5 IDIVDETGSVSEEMLKE--VENLLQ------FAAEREGVQNQAEVSVTIVTNEDIQQINK 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 EYRG D PT+V+SF +LGDI+++ + +A F+ L Sbjct: 57 EYRGKDTPTDVISFALEEEGEGEVEIVGAEMPPVLGDIIISADRTREQAEEYNHSFKREL 116 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L +HGFLHLLGYDH+ ++ M ++ +L+ G+ Sbjct: 117 GFLAVHGFLHLLGYDHMTKEEEEEMFTKQKDLLDAYGLK 155 >gi|90414092|ref|ZP_01222075.1| hypothetical protein P3TCK_25855 [Photobacterium profundum 3TCK] gi|90324887|gb|EAS41415.1| hypothetical protein P3TCK_25855 [Photobacterium profundum 3TCK] Length = 154 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 60/161 (37%), Positives = 90/161 (55%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ A EN + + + F AV+ + ++ E+++ D + L Sbjct: 5 LDLQYATEN---QEGLPSEDEFQQWFEAAVT--------LFQSDAEITIRIVDVKESQAL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N EYRG DKPTNVLSFP + G +LGD+++ +++EIEA K H H++ Sbjct: 54 NLEYRGKDKPTNVLSFPFE--TPPGIELDLLGDLIICRQVVEIEAKEQDKPLNAHWAHMV 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH++D++A ME LE I+E +G DP+ + Sbjct: 112 VHGTLHLLGYDHIEDEEAEEMESLETEIIEKMGFADPFAAE 152 >gi|319651597|ref|ZP_08005724.1| hypothetical protein HMPREF1013_02336 [Bacillus sp. 2_A_57_CT2] gi|317396664|gb|EFV77375.1| hypothetical protein HMPREF1013_02336 [Bacillus sp. 2_A_57_CT2] Length = 156 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 12/160 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++L I + + + E + + E E+S+ F + RI + Sbjct: 1 MNLNIDFLDETNELQENDIAKIEELIN------FAASKESVEPESEVSITFVTNERIREI 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 N EYR D+PT+V+SF +LGDI+++ + +A G F Sbjct: 55 NREYRDKDRPTDVISFAMEELGEGEIELIGADMPRVLGDIIISVAKAKEQAEEYGHSFIR 114 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L +HGFLHLLGYDH + +D M ++ IL++ G+ Sbjct: 115 ELGFLAVHGFLHLLGYDHENPEDEKKMFSRQKDILDEFGL 154 >gi|262068037|ref|ZP_06027649.1| putative metalloprotease [Fusobacterium periodonticum ATCC 33693] gi|291378259|gb|EFE85777.1| putative metalloprotease [Fusobacterium periodonticum ATCC 33693] Length = 162 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 2/148 (1%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 EN + + I + + ++ E + LS++ TD+ I+ +N EYR Sbjct: 12 ENEKYSEFIDKL-YEDSYLENYIKKVLEIEEVESERPLYLSVLLTDNKNIQVINREYRDK 70 Query: 78 DKPTNVLSFPTAFASSDGCSSLM-LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 D PT+V+SF LGDI+++ E +E +++ F+ +++ HG LH Sbjct: 71 DAPTDVISFAYHETDDFNIGPYDTLGDIIISLERVEEQSSEYNHSFKREFYYVLTHGILH 130 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGI 164 +LGYDH+++ D VM E +IL G Sbjct: 131 ILGYDHIEEDDKKVMREREEAILSSFGY 158 >gi|300310056|ref|YP_003774148.1| metal-dependent hydrolase [Herbaspirillum seropedicae SmR1] gi|300072841|gb|ADJ62240.1| metal-dependent hydrolase protein [Herbaspirillum seropedicae SmR1] Length = 151 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 13/161 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 +P+ L ++V+ A DE +T+ + + V + +L+L F S Sbjct: 1 MPKHKLTLSVQYA---DERLKKTITTTLLRRWVQAALFA-------PAQLTLRFVGSEEG 50 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +YRG D TNVL+F D S + DI+ +++E EA K E H Sbjct: 51 RDLNRDYRGKDYATNVLTFAYTE---DEDSEVTEADIIFCTDVLEKEAAEQKKSVEEHTA 107 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL++HG LH GYDH DD++A ME LE IL LG +PY Sbjct: 108 HLVVHGVLHAQGYDHEDDEEADEMEALETEILAGLGYANPY 148 >gi|297194455|ref|ZP_06911853.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] gi|197718735|gb|EDY62643.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] Length = 165 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 17/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + ++ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALSRMRIHPLS----------ELSVIVVDAEAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-----GCSSLMLGDIVLAYEIIEIEANV--LGKEFE 123 + ++ + PT+V+SFP +LGDIVL E+ + + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPSKDDEEPPQGLLGDIVLCPEVAKKQGEEAPTQHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L L +HG LHLLGYDH + + M GL+ +I Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAI 145 >gi|227495952|ref|ZP_03926263.1| metalloprotease [Actinomyces urogenitalis DSM 15434] gi|226834506|gb|EEH66889.1| metalloprotease [Actinomyces urogenitalis DSM 15434] Length = 152 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++ E + D L + V EL+++F D + L Sbjct: 1 MTTEVNNETDVEIDGAEFAALADHVLRAM----------HVNPQAELNILFIDPEPMAEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM----LGDIVLAYEIIEIEANVLGKEFENHL 126 + + + PT+V+SFP S LGDIVL ++ +A G + Sbjct: 51 HVRWLDLPGPTDVMSFPMDELRPGTEDSETPAGTLGDIVLCPQVAAKQALEAGHSAPEEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L HG LHLLGYDH ++++ M L+R +L Sbjct: 111 LLLTTHGILHLLGYDHAEEEEKKEMFALQRQLL 143 >gi|237740707|ref|ZP_04571188.1| metal-binding protein [Fusobacterium sp. 2_1_31] gi|229422724|gb|EEO37771.1| metal-binding protein [Fusobacterium sp. 2_1_31] Length = 161 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 2/158 (1%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCE-VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 L L + E + L E + ++ E + LS++ TD+ I Sbjct: 1 MELVLDFSCELDNEKYNEFIDKLYEDSYLENYIKKVLEIEEVKAERPLYLSVLLTDNKNI 60 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-LGDIVLAYEIIEIEANVLGKEFENHL 126 + +N EYR D PT+V+SF LGDI+++ E +E +++ FE Sbjct: 61 QVINREYRDKDAPTDVISFAYHETDDFNIGPYDTLGDIIISLERVEEQSSEYNHSFEREF 120 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +++ HG LH+LGYDH++++D VM E +IL G Sbjct: 121 YYVLTHGILHILGYDHIEEEDKKVMREREEAILSSFGY 158 >gi|296504797|ref|YP_003666497.1| putative metalloprotease [Bacillus thuringiensis BMB171] gi|296325849|gb|ADH08777.1| putative metalloprotease [Bacillus thuringiensis BMB171] Length = 156 Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 8/149 (5%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKE--NIVELSLVFTDSHRIETLNFEYRGIDKPT 81 D I + + + ++ K ++ + E+S+ F D+ RI +N +YR D+PT Sbjct: 6 DFIDETEEVKEEYMSLICEVLEKAAQMENIEDGAEVSVTFVDNERIREINRDYRDKDQPT 65 Query: 82 NVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 +V+SF MLGD++++ + +A G F+ L L +HGFL Sbjct: 66 DVISFAMEEMGEGEMEIVGAEMPRMLGDLIISIPRAKEQAEEYGHSFDRELGFLALHGFL 125 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGI 164 HLLGYDH+ ++D M G ++ ILE G+ Sbjct: 126 HLLGYDHMTEEDEKEMFGRQKEILEAFGL 154 >gi|260438417|ref|ZP_05792233.1| putative metalloprotease [Butyrivibrio crossotus DSM 2876] gi|292809003|gb|EFF68208.1| putative metalloprotease [Butyrivibrio crossotus DSM 2876] Length = 166 Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 77/169 (45%), Gaps = 22/169 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + E D I T+ + V A+ Y E+SL TD+ I + Sbjct: 1 MTINFEKEYDKNLD-IDYETIADKVINAALD------YEKCPYEAEVSLTLTDNKGIHDI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFAS---------------SDGCSSLMLGDIVLAYEIIEIEA 115 N E+R ID+PT+VLSFP + LMLGDIV++ + +E +A Sbjct: 54 NKEFRNIDRPTDVLSFPMVEYETPGEFDFLENEYDCFNPETGELMLGDIVISLDKVEEQA 113 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G LI H LHL+GYDH+++ DA ME + ILE LGI Sbjct: 114 ANYGHSVTREYAFLIAHSMLHLMGYDHMEENDAKEMERRQAEILESLGI 162 >gi|327440938|dbj|BAK17303.1| predicted metal-dependent hydrolase [Solibacillus silvestris StLB046] Length = 161 Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 14/161 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L + E ++ + K + + + E+ E+S+ F + I Sbjct: 1 MLLIDFLDETN------EVQESHLELVEKLLQHAAEQEGI--EDGSEVSVTFVTNEAIHE 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFE 123 +N EYR D+PT+V+SF +LGDI+++ + +A G FE Sbjct: 53 INREYRDKDQPTDVISFALEEMGEGELQIIGEGIPRILGDIIISTDRTREQAAEYGHTFE 112 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L +HGFLHLLGYDH+ +D VM G + +IL+ G+ Sbjct: 113 RELGFLAVHGFLHLLGYDHMTREDEKVMFGKQDTILQSYGL 153 >gi|296157339|ref|ZP_06840175.1| protein of unknown function UPF0054 [Burkholderia sp. Ch1-1] gi|295892675|gb|EFG72457.1| protein of unknown function UPF0054 [Burkholderia sp. Ch1-1] Length = 153 Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats. Identities = 56/162 (34%), Positives = 77/162 (47%), Gaps = 14/162 (8%) Query: 9 PRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 P+L L + W + L V+ I F EL++ F D+ Sbjct: 5 PKLTLNLQFPAAKAWPEHKALLP------RATVAGWIKAALFAD---GELTVRFVDAEEG 55 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 TLN YRG D TNVL+F A + D + GD++L ++E EA GK H Sbjct: 56 RTLNRTYRGKDYSTNVLTFAYAESEDD----PVTGDLILCCPVVEKEAAEQGKPLLAHYA 111 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH +++A ME +E IL LG DPY+ Sbjct: 112 HLLVHGTLHAQGYDHEAEEEAEEMEAIETEILGKLGFPDPYQ 153 >gi|302545480|ref|ZP_07297822.1| putative metalloprotease [Streptomyces hygroscopicus ATCC 53653] gi|302463098|gb|EFL26191.1| putative metalloprotease [Streptomyces himastatinicus ATCC 53653] Length = 165 Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 17/156 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELSL+ D+ +E L Sbjct: 1 MAIDVNNESGTDIDERAILDVARYALARMRIHPLS----------ELSLIVVDADAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANV--LGKEFE 123 + ++ + PT+V+SFP D +LGDIVL ++ + + G + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPVKDDDEPPQGLLGDIVLCPDVAKKQGEEAPTGHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L L +HG LHLLGYDH + + M GL+ +I+ Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDERAEMFGLQAAII 146 >gi|148653768|ref|YP_001280861.1| hypothetical protein PsycPRwf_1971 [Psychrobacter sp. PRwf-1] gi|148572852|gb|ABQ94911.1| protein of unknown function UPF0054 [Psychrobacter sp. PRwf-1] Length = 185 Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAY 108 + +L + TD+ LN E R D TN+LS+P+ + + L LG++++ + Sbjct: 62 QHKPKQLGVYITDAVEGRALNLEARDKDYATNILSYPSELPAFIIEQMPELALGELIVCH 121 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDP 167 ++++ +A K H+ HL++HG LHLLG+DH MEG E +ILE LGI +P Sbjct: 122 DVVKQQAAEQHKTVAEHVTHLLVHGILHLLGFDHELGQAQQDEMEGFEIAILEQLGIGNP 181 Query: 168 Y 168 Y Sbjct: 182 Y 182 >gi|19553485|ref|NP_601487.1| putative metalloprotease [Corynebacterium glutamicum ATCC 13032] gi|62391128|ref|YP_226530.1| metalloprotease [Corynebacterium glutamicum ATCC 13032] gi|26006926|sp|Q8NNB7|RRMF_CORGL RecName: Full=Probable rRNA maturation factor gi|21325058|dbj|BAB99680.1| Predicted metal-dependent hydrolase [Corynebacterium glutamicum ATCC 13032] gi|41326467|emb|CAF20629.1| Predicted metal-dependent hydrolase [Corynebacterium glutamicum ATCC 13032] Length = 196 Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ D ++ L +V+ + G E S+ D I L Sbjct: 1 MSIEVFNESGY--DGVNEEMLIDVL-------SFALGEMDIHPDAEASIHIVDVDTIADL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG-------CSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + ++ ++ PT+V+SFP + MLGDIVL E +A G + Sbjct: 52 HVKWLDLEGPTDVMSFPMDELTPGYSRPDGATPGPAMLGDIVLCPEFAAKQATKAGHDLA 111 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + L L +HG LHLLGYDHVD + M L+ +L Sbjct: 112 HELALLTVHGSLHLLGYDHVDPAEEREMFALQNELLA 148 >gi|29832127|ref|NP_826761.1| putative metalloprotease [Streptomyces avermitilis MA-4680] gi|46577428|sp|Q82BX0|RRMF_STRAW RecName: Full=Probable rRNA maturation factor gi|29609245|dbj|BAC73296.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 165 Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 17/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALARMRIHPLS----------ELSVIVVDADAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANV--LGKEFE 123 + ++ + PT+V+SFP D +LGDIVL E+ E + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPMKDDDEPPQGLLGDIVLCPEVAERQGKEAPTQHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L L +HG LHLLGYDH + + M GL+ +I Sbjct: 111 EELQLLAVHGVLHLLGYDHEEPDEKAEMFGLQAAI 145 >gi|297160576|gb|ADI10288.1| putative metalloprotease [Streptomyces bingchenggensis BCW-1] Length = 165 Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 17/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MAIDVNNESGTEIDERAVLDVARYALARMRIHPLS----------ELSVIVVDADAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-----GCSSLMLGDIVLAYEIIEIEANV--LGKEFE 123 + ++ + PT+V+SFP +LGDIVL E+ + + G + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEVAKKQGEEAPTGHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L L +HG LHLLGYDH + + M GL+ +I Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDERAEMFGLQAAI 145 >gi|284047990|ref|YP_003398329.1| protein of unknown function UPF0054 [Acidaminococcus fermentans DSM 20731] gi|283952211|gb|ADB47014.1| protein of unknown function UPF0054 [Acidaminococcus fermentans DSM 20731] Length = 160 Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 9/156 (5%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 + +EN EI + E KA+ + K E+ + ++ I TLN +Y Sbjct: 3 VTLENN--QTEIAIPEELEETLKKAMDIVARKENLTDN--TEVDITIVNNEEIHTLNRDY 58 Query: 75 RGIDKPTNVLSFPTAFASS-----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 RGID+PT+VLSF DG + +LGD++++ + G + +L Sbjct: 59 RGIDRPTDVLSFALDEGDEEPEVEDGEAEHLLGDVIISAPRAVEQGEEFGHGLTREMTYL 118 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +HG LHLLGYDH+++ D VM E IL +L + Sbjct: 119 AVHGMLHLLGYDHMEEADKRVMRAREEEILRELDLA 154 >gi|326942085|gb|AEA17981.1| putative metalloprotease [Bacillus thuringiensis serovar chinensis CT-43] Length = 156 Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 14/158 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + E +E +L V KA E+ E+S+ F D+ RI +N Sbjct: 5 IDFIDETEEVKEEY--MSLIREVLEKAAQM------ENIEDGAEVSVTFVDNERIREINR 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 +YR D+PT+V+SF MLGD++++ + +A G F+ L Sbjct: 57 DYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLIISIPRAKEQAEEYGHSFDREL 116 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 117 GFLALHGFLHLLGYDHMTEEDENEMFGRQKEILEAFGL 154 >gi|312135090|ref|YP_004002428.1| hypothetical protein Calow_1065 [Caldicellulosiruptor owensensis OL] gi|311775141|gb|ADQ04628.1| protein of unknown function UPF0054 [Caldicellulosiruptor owensensis OL] Length = 158 Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 12/158 (7%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N D++ + + +V+N I F++E E+S++ D++ I+ LN +Y Sbjct: 3 IFIQNQ--QDKVDVAEHISKIIEASVANTIK--IFLQEENFEVSVLIVDNNLIKELNRKY 58 Query: 75 RGIDKPTNVLSFPTAFASSDG--------CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 R I+K T+VLSFP + + LGDIV++ E +A G E + Sbjct: 59 RNINKETDVLSFPIFEFKNGQLQEDIVIVEDEIPLGDIVISIEKALQQAEEFGHSLEREV 118 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +L +H LHLLG+DH+++ D VM E IL+ +G+ Sbjct: 119 AYLTVHSVLHLLGFDHIEEDDRKVMRKYEEQILDSMGL 156 >gi|319440586|ref|ZP_07989742.1| metal-binding heat shock protein [Corynebacterium variabile DSM 44702] Length = 183 Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + E++ L +V S + ELS+ D I L Sbjct: 1 MSIEVYNESGM--GEVNEEELIDVARFALWS-------LDVHSSAELSIHIVDLETIADL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-------GCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + + + PT+V+SFP + +LGDI+L + + +A+ G Sbjct: 52 HVRWLDLPGPTDVMSFPMDELTPGWGRKDGPPPGPGVLGDIMLCPDFAQGQADKAGHPLA 111 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + L L +HG LHLLG+DHV ++ M L+ IL + Sbjct: 112 HELDLLTVHGVLHLLGFDHVVPEEEQRMFALQNEILAN 149 >gi|209517502|ref|ZP_03266342.1| protein of unknown function UPF0054 [Burkholderia sp. H160] gi|209502035|gb|EEA02051.1| protein of unknown function UPF0054 [Burkholderia sp. H160] Length = 153 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 57/162 (35%), Positives = 78/162 (48%), Gaps = 14/162 (8%) Query: 9 PRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 P+L L + W + L V+ I F EL++ F D+ Sbjct: 5 PKLTLNLQFPAAKAWPEHKALLP------RATVAGWIKAALFAD---GELTIRFVDAEEG 55 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 TLN YRG D TNVL+F A + D + GD++L ++E EA GK H Sbjct: 56 RTLNRTYRGKDYATNVLTFAYAESEDD----PVTGDLILCCPVVEQEAAEQGKPLAAHYA 111 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH +++A ME LE IL+ LG DPY+ Sbjct: 112 HLLVHGTLHAQGYDHEVEEEAEEMEALETEILDKLGFPDPYQ 153 >gi|148272750|ref|YP_001222311.1| putative metalloprotease [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166231413|sp|A5CRB1|RRMF_CLAM3 RecName: Full=Probable rRNA maturation factor gi|147830680|emb|CAN01620.1| putative metal-dependent hydrolase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 153 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I E+A+ DE ++ L EL++V D +E L Sbjct: 1 MSIEINNESAIEVDEPVIQRLVTYALDT----------LHVHPDAELAIVMVDEGAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM----LGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ PT+VLSFP LGDIV+ ++ +A G + Sbjct: 51 HVQWMDEPGPTDVLSFPMDELRPGTEDRPTPAGLLGDIVVCPQVAAEQAVTAGHSTMEEI 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L HG LHLLG+DH + + M GL+R IL Sbjct: 111 LLLTAHGILHLLGFDHAEPDEEREMFGLQRDIL 143 >gi|291302084|ref|YP_003513362.1| hypothetical protein Snas_4626 [Stackebrandtia nassauensis DSM 44728] gi|290571304|gb|ADD44269.1| protein of unknown function UPF0054 [Stackebrandtia nassauensis DSM 44728] Length = 156 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 18/159 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E+ E+ ++C+V A+S + + +LS++ D + L Sbjct: 1 MPIEVANESGA---EVGTESICDVA-RHALSEM------GVHPLADLSILVVDETYMSEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF--------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 N + G PT+VL+FP S+ + +LGD+VL E+ E +A G Sbjct: 51 NHRWMGAAGPTDVLAFPMDELSVGRGPSNDSEPAAETLLGDVVLCPEVAERQAAKAGHST 110 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + L L +HG LH+LGYDH + +A M GL++S+L+ Sbjct: 111 ADELHMLTVHGVLHILGYDHAEPDEAKQMFGLQQSLLDS 149 >gi|228941468|ref|ZP_04104019.1| metalloprotease [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974399|ref|ZP_04134968.1| metalloprotease [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980992|ref|ZP_04141295.1| metalloprotease [Bacillus thuringiensis Bt407] gi|228778783|gb|EEM27047.1| metalloprotease [Bacillus thuringiensis Bt407] gi|228785449|gb|EEM33459.1| metalloprotease [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818249|gb|EEM64323.1| metalloprotease [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 154 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 14/160 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + E +E +L V KA E+ E+S+ F D+ RI + Sbjct: 1 MLIDFIDETEEVKEEY--MSLIREVLEKAAQM------ENIEDGAEVSVTFVDNERIREI 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 N +YR D+PT+V+SF MLGD++++ + +A G F+ Sbjct: 53 NRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLIISIPRAKEQAEEYGHSFDR 112 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 113 ELGFLALHGFLHLLGYDHMTEEDENEMFGRQKEILEAFGL 152 >gi|73667540|ref|YP_303556.1| hypothetical protein Ecaj_0927 [Ehrlichia canis str. Jake] gi|123614591|sp|Q3YQP7|RRMF_EHRCJ RecName: Full=Probable rRNA maturation factor gi|72394681|gb|AAZ68958.1| protein of unknown function UPF0054 [Ehrlichia canis str. Jake] Length = 154 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 8/156 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I V W + I F K + N + E +S+V ++ ++ LN+ Sbjct: 2 IEINVYYKKWYNVIRKPK----SFVKNIINTSLIDLNIYEYKPIISIVLANNKLLQQLNY 57 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 EYR +KPTNVLSFP + + LG+I ++ +++ E+ L E+H H++IH Sbjct: 58 EYRKKNKPTNVLSFPY----NKLDKNCYLGEIFISLDVLMNESVDLNIPIEHHTSHMLIH 113 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 G LH+L YDH + D +ME +E +L+ LGI +PY Sbjct: 114 GLLHILDYDHEEPLDQYIMESIEIKLLDKLGIKNPY 149 >gi|229031951|ref|ZP_04187938.1| metalloprotease [Bacillus cereus AH1271] gi|229174977|ref|ZP_04302497.1| metalloprotease [Bacillus cereus MM3] gi|228608645|gb|EEK65947.1| metalloprotease [Bacillus cereus MM3] gi|228729415|gb|EEL80405.1| metalloprotease [Bacillus cereus AH1271] Length = 143 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 6/121 (4%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGD 103 E+ ELS+ F D+ RI +N +YR D+PT+V+SF MLGD Sbjct: 21 KIEDGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGD 80 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 ++++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G Sbjct: 81 LIISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFG 140 Query: 164 I 164 + Sbjct: 141 L 141 >gi|302871925|ref|YP_003840561.1| hypothetical protein COB47_1283 [Caldicellulosiruptor obsidiansis OB47] gi|302574784|gb|ADL42575.1| protein of unknown function UPF0054 [Caldicellulosiruptor obsidiansis OB47] Length = 158 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 12/158 (7%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N D++ + + +V+N + F++E E+S++ D++ I+ LN Y Sbjct: 3 IFIQNQ--QDKVDVDEHISKIIEDSVANTLK--IFLQEENFEVSVLIVDNNFIKELNRNY 58 Query: 75 RGIDKPTNVLSFPTAFASSDG--------CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 R ++K T+VLSFP + + LGDIV++ E +A G E + Sbjct: 59 RNVNKETDVLSFPIFEFKNGQLQEDIVVVEDEIPLGDIVISIEKALQQAKEFGHSLEREV 118 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +L +H LHLLG+DH+++ D VM E IL+ +G+ Sbjct: 119 AYLTVHSVLHLLGFDHIEEDDRKVMRKYEEQILDSMGL 156 >gi|205374159|ref|ZP_03226959.1| putative metalloprotease [Bacillus coahuilensis m4-4] Length = 158 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 16/166 (9%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + +DL ++ + L + E++ A +++G E+SL F + Sbjct: 1 MTYIEMDL---LDETKEVAQDDLELVQEILHFAAKKEGVTQGS-------EVSLTFVTNE 50 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLG 119 RI+ +N EYR D+PT+V+SF + +LGDI+++ E +A+ G Sbjct: 51 RIQQVNREYRDKDQPTDVISFALEEMDENEIRIIGEGIPRVLGDIIISVERTREQASEYG 110 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 F+ L L +HGFLHLLGYDH++++D VM ++ IL++ G+ Sbjct: 111 HSFQRELGFLALHGFLHLLGYDHINEQDEKVMFQRQKDILDEFGLK 156 >gi|217972291|ref|YP_002357042.1| putative metalloprotease [Shewanella baltica OS223] gi|254799938|sp|B8E6K8|RRMF_SHEB2 RecName: Full=Probable rRNA maturation factor gi|217497426|gb|ACK45619.1| protein of unknown function UPF0054 [Shewanella baltica OS223] Length = 153 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 59/159 (37%), Positives = 86/159 (54%), Gaps = 10/159 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDL + +++A D + + A+ N + EL++ DS + L Sbjct: 3 LDLALDIQHATTCDWLPTDEQFALWATTAIGN--------SMDEAELTIRIVDSRESQML 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP + +LGD+V+ ++E EA K E H H++ Sbjct: 55 NSTYRGKDKPTNVLSFPFE--APPEIELPLLGDLVICAAVVENEAREQQKTLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D++A ME LE ++E LG DPY+ Sbjct: 113 VHGCLHLLGYDHIEDEEAEEMESLETQLIEGLGFTDPYK 151 >gi|70726347|ref|YP_253261.1| hypothetical protein SH1346 [Staphylococcus haemolyticus JCSC1435] gi|123660334|sp|Q4L6S0|RRMF_STAHJ RecName: Full=Probable rRNA maturation factor gi|68447071|dbj|BAE04655.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 153 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 3/124 (2%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---CSSLM 100 +K ELS+ F D + I+ +N YR DK T+V+SF + + Sbjct: 27 FAKEQEQINEDAELSVTFVDKNEIQEINKTYRDKDKVTDVISFALEEDEPEIVGLDMPRV 86 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LGDI++ + E +A+ G FE L L +HGFLHLLGYDH++++D VM + +IL Sbjct: 87 LGDIIICTNVAEEQADSFGHSFERELGFLALHGFLHLLGYDHMNEEDEKVMFSRQDTILN 146 Query: 161 DLGI 164 G+ Sbjct: 147 AYGL 150 >gi|238019234|ref|ZP_04599660.1| hypothetical protein VEIDISOL_01098 [Veillonella dispar ATCC 17748] gi|237863933|gb|EEP65223.1| hypothetical protein VEIDISOL_01098 [Veillonella dispar ATCC 17748] Length = 158 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 14/165 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I+ + I + E V K + ++ E+S++ D+ +I L Sbjct: 1 MYIHISYDEG-----IQEDSNIEAVIRKVCDEVSRVYGLEED---EMSILLCDNAKIHEL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 N EYRGID+PT+VLSF +LGD++++ E +A G FE L Sbjct: 53 NKEYRGIDRPTDVLSFALNEGDDYEGSEEEHHLLGDMIISLERTREQAIEYGHSFERELA 112 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI---NDPYE 169 +L H LH+LGYDH++D+D M E IL +LG + PY Sbjct: 113 YLTTHSCLHILGYDHMNDEDKKEMRTEEEFILGNLGYVREDAPYN 157 >gi|237785903|ref|YP_002906608.1| putative metalloprotease [Corynebacterium kroppenstedtii DSM 44385] gi|259646826|sp|C4LJR0|RRMF_CORK4 RecName: Full=Probable rRNA maturation factor gi|237758815|gb|ACR18065.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM 44385] Length = 202 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ D ++ L +V + I ++++ D IE L Sbjct: 1 MSIEVFNESGY--DGVNEEALIDVAQFALMRMDIHPA-------ADMTISIVDEPTIEDL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASS-------DGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + + ++ PT+V+SFP + D MLGDIVL E +A+ G Sbjct: 52 HVRWLNLEGPTDVMSFPMDELTPGSGRPDADAPGPAMLGDIVLCPAFAERQAHRAGHGLG 111 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + L L +HG LHLLGYDHV ++ M L+ IL Sbjct: 112 HELSLLTVHGILHLLGYDHVAPEEERRMFALQNDILA 148 >gi|325068590|ref|ZP_08127263.1| hypothetical protein AoriK_12246 [Actinomyces oris K20] gi|326773546|ref|ZP_08232829.1| metalloprotease [Actinomyces viscosus C505] gi|326636776|gb|EGE37679.1| metalloprotease [Actinomyces viscosus C505] Length = 152 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++ E D L + V EL+++F D +E L Sbjct: 1 MTTEVINETTTVIDAAEFAALADHVLTAM----------HVSPAAELNIMFIDPEPMEEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM----LGDIVLAYEIIEIEANVLGKEFENHL 126 + + + PT+V+SFP S LGDIVL ++ +A G + Sbjct: 51 HVRWLDLPGPTDVMSFPMDELRPGSADSPTPAGTLGDIVLCPQVAAKQALAAGHSAVEEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L +HG LHLLGYDH + ++ M L+R +L Sbjct: 111 LLLTVHGILHLLGYDHAEPEEKKEMFDLQRRLL 143 >gi|311895962|dbj|BAJ28370.1| putative metallopeptidase [Kitasatospora setae KM-6054] Length = 164 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 16/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + IA E+ DE + + K + ELS++ DS + L Sbjct: 1 MSIDIANESGWDVDEESILDVARYALDKMRIH----------PQSELSVILYDSESMAEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYEIIEIE--ANVLGKEFEN 124 + ++ + PT+V+SFP + +LGDIVL E+ + + A + Sbjct: 51 HVQWMDLPGPTDVMSFPMDELRPGKEGEDLPEGLLGDIVLCPEVAKEQGLAAPTKHSMDE 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L L +HG LH+LGYDH + + M L++ IL Sbjct: 111 ELQLLTVHGVLHVLGYDHEEPDEEREMFALQKRIL 145 >gi|300088389|ref|YP_003758911.1| hypothetical protein Dehly_1299 [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528122|gb|ADJ26590.1| protein of unknown function UPF0054 [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 161 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 24/166 (14%) Query: 11 LDLQIAV--ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 + + I V E + LR+L + + S E+ + T ++ Sbjct: 1 MKIDITVDREYKKAVSVLWLRSLARQILVAQCAEAGS----------EMGIYITGQEKMR 50 Query: 69 TLNFEYRGIDKPTNVLSFPTA------------FASSDGCSSLMLGDIVLAYEIIEIEAN 116 LN YRG DKPT+VLSF SL LG++V++ E++A Sbjct: 51 ELNRVYRGKDKPTDVLSFSFYVKEASGSAETDVEFPVPEDGSLHLGELVISLPQAELQAA 110 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 LG + L L+IHG +HLLG+DH D DA +ME E IL+ L Sbjct: 111 ELGHSVKTELARLLIHGVMHLLGFDHEKDADAEIMEARELEILKQL 156 >gi|290960550|ref|YP_003491732.1| hypothetical protein SCAB_61701 [Streptomyces scabiei 87.22] gi|260650076|emb|CBG73192.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 165 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 17/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + + + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALTRMRIHPLS----------ELSVIVVDADAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANV--LGKEFE 123 + ++ + PT+V+SFP D +LGDIVL E+ E + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPSKDDDEPPQGLLGDIVLCPEVAEKQGKDADTQHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L L +HG LHLLGYDH + + M GL+ +I Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAI 145 >gi|56751122|ref|YP_171823.1| putative metalloprotease [Synechococcus elongatus PCC 6301] gi|81299213|ref|YP_399421.1| putative metalloprotease [Synechococcus elongatus PCC 7942] gi|62901410|sp|Q5N317|RRMF_SYNP6 RecName: Full=Probable rRNA maturation factor gi|123557443|sp|Q31R85|RRMF_SYNE7 RecName: Full=Probable rRNA maturation factor gi|56686081|dbj|BAD79303.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81168094|gb|ABB56434.1| Protein of unknown function UPF0054 [Synechococcus elongatus PCC 7942] Length = 174 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 13/167 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFV-KENIVELSLVFTDS 64 + L L +Q+A D + + + ++++ + + E L F D Sbjct: 1 MALLDLTVQMAC-----SDRLPDLPW-QDWLDRWLTDIQPQLPEDWQAPTYEACLRFVDD 54 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYEIIEIEANVLGK 120 I+ LN +YR +DKPT+VL+F D L LGD++++ + +A G Sbjct: 55 AEIQQLNRDYRQLDKPTDVLAFAALEDELALGFDPEEPLYLGDVIISVPTAQRQA--QGH 112 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 E LV L HG LHLLG+DH +++ M + L+ + + P Sbjct: 113 ALETELVWLSAHGLLHLLGWDHPNEEQLAAMLTQQERWLQLVAVPVP 159 >gi|228916935|ref|ZP_04080497.1| metalloprotease [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842759|gb|EEM87845.1| metalloprotease [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 143 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 6/121 (4%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGD 103 E+ ELS+ F D+ RI +N +YR D+PT+V+SF MLGD Sbjct: 21 KIEDGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGVEMPRMLGD 80 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 ++++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G Sbjct: 81 LIISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKGILEAFG 140 Query: 164 I 164 + Sbjct: 141 L 141 >gi|145296242|ref|YP_001139063.1| putative metalloprotease [Corynebacterium glutamicum R] gi|166227674|sp|A4QFZ5|RRMF_CORGB RecName: Full=Probable rRNA maturation factor gi|140846162|dbj|BAF55161.1| hypothetical protein [Corynebacterium glutamicum R] Length = 196 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ D ++ L +V+ + G E S+ D I L Sbjct: 1 MSIEVFNESGY--DGVNEEMLIDVL-------SFALGEMDIHPDAEASIHIVDLDTIADL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG-------CSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + ++ ++ PT+V+SFP + MLGDIVL E +A G + Sbjct: 52 HVKWLDLEGPTDVMSFPMDELTPGYSRPDGATPGPAMLGDIVLCPEFAAKQATKAGHDLA 111 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + L L +HG LHLLGYDHVD + M L+ +L Sbjct: 112 HELALLTVHGSLHLLGYDHVDPAEEREMFALQNELLA 148 >gi|313893245|ref|ZP_07826820.1| translation metalloprotein YbeY [Veillonella sp. oral taxon 158 str. F0412] gi|313442141|gb|EFR60558.1| translation metalloprotein YbeY [Veillonella sp. oral taxon 158 str. F0412] Length = 158 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 8/142 (5%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 + V + +S+ Y ++E+ E+S++ D+ +I LN EYRGID+PT+VLSF Sbjct: 18 EAIIRKVCDEVSRVYGLEED--EMSILLCDNAKIHELNKEYRGIDRPTDVLSFALNEGDD 75 Query: 94 ---DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 +LGD++++ E +A G FE L +L H LH+LGYDH++D+D Sbjct: 76 YEGSEEEHHLLGDMIISLERTREQAIEYGHSFERELAYLTTHSCLHILGYDHMNDEDKKE 135 Query: 151 MEGLERSILEDLGI---NDPYE 169 M E IL +LG + PY Sbjct: 136 MRTEEEFILGNLGYVREDAPYN 157 >gi|317056498|ref|YP_004104965.1| hypothetical protein Rumal_1833 [Ruminococcus albus 7] gi|315448767|gb|ADU22331.1| protein of unknown function UPF0054 [Ruminococcus albus 7] Length = 170 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 9/159 (5%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +++ + N E+ + ++ + ++ F E+S+ F + +I LN Sbjct: 3 KVKVMITNN--QTEVKIPVGIRMLVRRCCHAVLEYEEFG--KDAEVSVSFVNDKQIHELN 58 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSS----LMLGDIVLAYEIIEIEANVLGKEFENHLV 127 E+R ID+PT+VLSFP + +LGDIV++ E +A V G E + Sbjct: 59 KEHRDIDRPTDVLSFPLGENGEYDVNYESGACLLGDIVISLETATRQAQVYGHSLEREVG 118 Query: 128 HLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGIN 165 L +H LHLLGYDH + +M E +IL LGI+ Sbjct: 119 FLTVHSMLHLLGYDHEESSLQERIMREKEEAILAQLGIS 157 >gi|227543020|ref|ZP_03973069.1| metalloprotease [Corynebacterium glucuronolyticum ATCC 51866] gi|227181242|gb|EEI62214.1| metalloprotease [Corynebacterium glucuronolyticum ATCC 51866] Length = 174 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 18/159 (11%) Query: 11 LDLQIAVENALW-GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + +++ E+ DE L T+ E + VE+++ D IE Sbjct: 1 MSIEVLNESGNTDVDEKQLSTVAEFALTTMDVH----------PSVEVTITCVDLDTIED 50 Query: 70 LNFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 L+ + ++ PT+V+SFP + LGDI+L + + +A+ G Sbjct: 51 LHVRWLDLEGPTDVMSFPMDDISSTGGRPDAADPGPAYLGDIILCPDFAQKQADKAGHSL 110 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + L L +HG LHLLGYDH + M L+ IL+ Sbjct: 111 NHELDLLTVHGCLHLLGYDHAKPNEEQHMFALQNDILKR 149 >gi|75908994|ref|YP_323290.1| putative metalloprotease [Anabaena variabilis ATCC 29413] gi|123609226|sp|Q3M9E1|RRMF_ANAVT RecName: Full=Probable rRNA maturation factor gi|75702719|gb|ABA22395.1| Protein of unknown function UPF0054 [Anabaena variabilis ATCC 29413] Length = 176 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 7/138 (5%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E F + + L S E+ L TD I+ +N +YR +KPT+VL+F A Sbjct: 36 EDWFHRWLEILDSS--LPPAPSYEIGLRLTDDTEIQAINAQYRQQNKPTDVLAFAALEAD 93 Query: 93 SDGC-----SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 L LGDIV++ + +A L L HG LHLLG+DH D++ Sbjct: 94 LPQNPEMVAEPLYLGDIVVSINTAQRQAGQQEHSLSTELAWLTAHGLLHLLGWDHPDEES 153 Query: 148 ACVMEGLERSILEDLGIN 165 M + +L+ +GI Sbjct: 154 LIAMLQQQVVLLDAVGIK 171 >gi|111221447|ref|YP_712241.1| putative metalloprotease [Frankia alni ACN14a] gi|122954432|sp|Q0RP74|RRMF_FRAAA RecName: Full=Probable rRNA maturation factor gi|111148979|emb|CAJ60659.1| conserved hypothetical protein [Frankia alni ACN14a] Length = 181 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 18/159 (11%) Query: 11 LDLQIAVENALW-GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + +A E+ DE+ L L V + ELS++ + + Sbjct: 1 MAVFVANESGANDVDEVRLTALARFVLDAM----------KVNPLAELSVMLVEEKAMAD 50 Query: 70 LNFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 L+ Y G + PT+VLSF S D + +LGD+VL ++ +A G Sbjct: 51 LHVRYMGEEGPTDVLSFAQDDAFDASWSESVDDDPTTLLGDVVLCPDVARRQAEQAGHSH 110 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 E L L HG LHLLGYDH + + M ++ +L Sbjct: 111 ERELHLLCTHGILHLLGYDHAEPDEEREMWKIQNKLLAS 149 >gi|295698305|ref|YP_003602960.1| hypothetical protein RIEPE_0079 [Candidatus Riesia pediculicola USDA] gi|291157124|gb|ADD79569.1| conserved hypothetical protein [Candidatus Riesia pediculicola USDA] Length = 151 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 2/139 (1%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + K I + + E+S+ + TLN YRG D PTNVLSF + Sbjct: 13 PEFIGFLNRKRFIKWIDRVLSYFSSEKEISIYIASLEEMRTLNRLYRGRDYPTNVLSFSS 72 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 G + LGD+++ +EI++ EA K ++H H+IIHG LHLLG H ++ D Sbjct: 73 NDMR--GFNFSFLGDLIICHEILKKEAKNQRKSIDSHWAHIIIHGCLHLLGIHHQNEIDL 130 Query: 149 CVMEGLERSILEDLGINDP 167 ME +E IL+ LG +P Sbjct: 131 KKMESMEIKILKRLGYPNP 149 >gi|294793789|ref|ZP_06758926.1| putative metalloprotease [Veillonella sp. 3_1_44] gi|294455359|gb|EFG23731.1| putative metalloprotease [Veillonella sp. 3_1_44] Length = 158 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 8/142 (5%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 + V + +S+ Y + E+ E+S++ ++ +I LN EYRGID+PT+VLSF Sbjct: 18 EAVIRKVCDEVSRVYGLDED--EMSILLCNNAKIHELNKEYRGIDRPTDVLSFALNEGDD 75 Query: 94 ---DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 +LGD++++ E +A G FE L +L H LH+LGYDH++D+D Sbjct: 76 YEGSEEEHHLLGDMIISLERTREQAIEYGHSFERELAYLTTHSCLHILGYDHMNDEDKKE 135 Query: 151 MEGLERSILEDLGI---NDPYE 169 M E IL +LG + PY Sbjct: 136 MRTEEEFILGNLGYVREDAPYN 157 >gi|254419922|ref|ZP_05033646.1| conserved hypothetical protein TIGR00043, putative [Brevundimonas sp. BAL3] gi|196186099|gb|EDX81075.1| conserved hypothetical protein TIGR00043, putative [Brevundimonas sp. BAL3] Length = 154 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 84/159 (52%), Gaps = 14/159 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I VE W + E V K + + ++ ++ TD + LN Sbjct: 2 IEIEVEAEAWTGALP---ETEAVVTK------AAEAALGAVAGDVVVLLTDDEAVRELNA 52 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +R D+PTNVLSFP +++ LGDIVLAY + EA GK +HL HL++H Sbjct: 53 RFRDKDRPTNVLSFPAPESAAP-----HLGDIVLAYGVCASEAQAQGKTLSDHLSHLVVH 107 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 G LHLLG DH DD +A ME ER IL +LG++DPY D Sbjct: 108 GVLHLLGRDHEDDAEAEEMEAEEREILAELGVSDPYAAD 146 >gi|322383672|ref|ZP_08057423.1| metalloprotease-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151884|gb|EFX44827.1| metalloprotease-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 170 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 68/163 (41%), Gaps = 19/163 (11%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 W +E + + + + L G E++L F ++ I LN +YRGID+P Sbjct: 6 DWTNEQEVLDMKQEWIDRLEQLLALAGKEEGIEDGEVTLTFVNNDMIHELNRQYRGIDRP 65 Query: 81 TNVLSFPTAFASSDGCSSLM-------------------LGDIVLAYEIIEIEANVLGKE 121 T+VLSF D LGDI+++ +A G Sbjct: 66 TDVLSFAMQEMGEDELIISYGELDEDGIEAVLEDKIVEPLGDIIISIPKTIEQAEEYGHS 125 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 FE L L +HGFLHL+GYDH + + M + IL G+ Sbjct: 126 FERELGFLFVHGFLHLVGYDHQTEDEEKKMFAKQELILSQAGL 168 >gi|227488408|ref|ZP_03918724.1| metalloprotease [Corynebacterium glucuronolyticum ATCC 51867] gi|227091622|gb|EEI26934.1| metalloprotease [Corynebacterium glucuronolyticum ATCC 51867] Length = 174 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 18/159 (11%) Query: 11 LDLQIAVENALW-GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + +++ E+ DE L T+ E + VE+++ D IE Sbjct: 1 MSIEVLNESGNTDVDEKQLSTVAEFALTTMDVH----------PSVEVTITCVDLDTIED 50 Query: 70 LNFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 L+ + ++ PT+V+SFP + LGDI+L + + +A+ G Sbjct: 51 LHVRWLDLEGPTDVMSFPMDDISSTSGRPDAADPGPAYLGDIILCPDFAQKQADKAGHSL 110 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + L L +HG LHLLGYDH + M L+ IL+ Sbjct: 111 NHELDLLTVHGCLHLLGYDHAKPNEEQHMFALQNDILKR 149 >gi|302534335|ref|ZP_07286677.1| conserved hypothetical protein [Streptomyces sp. C] gi|302443230|gb|EFL15046.1| conserved hypothetical protein [Streptomyces sp. C] Length = 165 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 17/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + + + +S ELS++ D +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALTRMRIHPLS----------ELSVIVIDEDAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-----GCSSLMLGDIVLAYEIIEIEANV--LGKEFE 123 + ++ + PT+V+SFP +LGDIVL E+ + + + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEVAKKQGDEAPTRHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L L +HG LHLLGYDH + + M GL+ +I Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAI 145 >gi|313884192|ref|ZP_07817958.1| translation metalloprotein YbeY [Eremococcus coleocola ACS-139-V-Col8] gi|312620639|gb|EFR32062.1| translation metalloprotein YbeY [Eremococcus coleocola ACS-139-V-Col8] Length = 157 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 17/164 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + +N L + V A LI + E+ + + I L Sbjct: 1 MVIDVIDDNNFLSQAQ--VELVQDVIKLAGQKLIL------PDNFEVDISIVTNEAIHEL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSS---------LMLGDIVLAYEIIEIEANVLGKE 121 N +YR ID+PT+VLSF + D + LGDI++++ I+ +A G Sbjct: 53 NRDYRNIDRPTDVLSFALEETAEDDPFGQIDMSEELGIFLGDIIISFPKIQEQATEYGHS 112 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 FE L L +HGFLHL GYDH M GL+ +L G+ Sbjct: 113 FERELAFLAVHGFLHLNGYDHQSPDQEKEMFGLQEEVLSAYGLE 156 >gi|289642692|ref|ZP_06474832.1| protein of unknown function UPF0054 [Frankia symbiont of Datisca glomerata] gi|289507522|gb|EFD28481.1| protein of unknown function UPF0054 [Frankia symbiont of Datisca glomerata] Length = 158 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 17/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + +A E+ + DE+ L L V + ELS++ + +E L Sbjct: 1 MAVFVANESGVEADEVTLTALARFVLDTM----------KVNPLAELSVMLVEQAAMEEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-------GCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + Y G + PT+VL+FP A +L+LGDIVL E+ +A G E Sbjct: 51 HVRYMGEEGPTDVLAFPQDDAFDPSAPDSGEDDPTLLLGDIVLCPEVARRQAAKAGHSTE 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + + L HG LHLLGYDH + + M ++ +L Sbjct: 111 HEMHLLCTHGILHLLGYDHAEPDEEREMWAVQSRLLTS 148 >gi|168702468|ref|ZP_02734745.1| hypothetical protein GobsU_23272 [Gemmata obscuriglobus UQM 2246] Length = 146 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 4/139 (2%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 + F + + +++L F D+ I LN ++ ++PT+VL+FP Sbjct: 8 NPYEYPLEFQQLKDAARAVLEGEGVKAGKVTLAFVDNPHIHRLNKQFLNHNEPTDVLTFP 67 Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + G++V+ YE+ + A F L+ ++HG LHL GYD DD Sbjct: 68 YTDPGAKSLE----GEVVIGYEVAKEYAADRNHAFNLELLLYVVHGCLHLTGYDDTDDDS 123 Query: 148 ACVMEGLERSILEDLGIND 166 M ER L LG+ D Sbjct: 124 EREMRAKEREYLTKLGLPD 142 >gi|320532466|ref|ZP_08033292.1| conserved hypothetical protein TIGR00043 [Actinomyces sp. oral taxon 171 str. F0337] gi|329946932|ref|ZP_08294344.1| translation metalloprotein YbeY [Actinomyces sp. oral taxon 170 str. F0386] gi|320135319|gb|EFW27441.1| conserved hypothetical protein TIGR00043 [Actinomyces sp. oral taxon 171 str. F0337] gi|328526743|gb|EGF53756.1| translation metalloprotein YbeY [Actinomyces sp. oral taxon 170 str. F0386] Length = 152 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++ E D L + V EL+++F D +E L Sbjct: 1 MTTEVINETTTVIDAAEFADLADHVLTAM----------HVSPAAELNIMFIDPEPMEEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM----LGDIVLAYEIIEIEANVLGKEFENHL 126 + + + PT+V+SFP S LGDIVL ++ +A G + Sbjct: 51 HVRWLDLPGPTDVMSFPMDELRPGSADSPTPAGTLGDIVLCPQVAAKQALAAGHSAVEEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L +HG LHLLGYDH + ++ M L+R +L Sbjct: 111 LLLTVHGILHLLGYDHAEPEEKKEMFDLQRRLL 143 >gi|126175463|ref|YP_001051612.1| putative metalloprotease [Shewanella baltica OS155] gi|166229097|sp|A3D7N0|RRMF_SHEB5 RecName: Full=Probable rRNA maturation factor gi|125998668|gb|ABN62743.1| protein of unknown function UPF0054 [Shewanella baltica OS155] Length = 153 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 86/159 (54%), Gaps = 10/159 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDL + +++A D + + A+ N + EL++ D+ + L Sbjct: 3 LDLALDIQHATTCDWLPTDEQFALWATTAIGN--------SMDEAELTIRIVDTRESQML 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP + +LGD+V+ ++E EA K E H H++ Sbjct: 55 NSTYRGKDKPTNVLSFPFE--APPEIELPLLGDLVICAAVVENEAREQQKTLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D++A ME LE ++E LG DPY+ Sbjct: 113 VHGCLHLLGYDHIEDEEAEEMESLETQLIEGLGFTDPYK 151 >gi|283458061|ref|YP_003362672.1| putative metal-dependent hydrolase [Rothia mucilaginosa DY-18] gi|283134087|dbj|BAI64852.1| predicted metal-dependent hydrolase [Rothia mucilaginosa DY-18] Length = 173 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 10/168 (5%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKEN------IVELSLVFTD 63 +++ E G + F + ++++ LS+ + Sbjct: 1 MAEIEFDCEEPATGADPATDAFIRESFEAVDTEVLTRLVEHAFKRMHLADDTYLSIAIVN 60 Query: 64 SHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL---MLGDIVLAYEIIEIEANVLGK 120 +E ++ E+ + T+V+SFP + MLGDI+L + + G Sbjct: 61 EDEMERVHIEWMDLPGATDVMSFPMDELEPGTPENPSSGMLGDIILCPPVAARQGADAGH 120 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED-LGINDP 167 + L L HG LH LGYDH ++ M G++RSILE+ LG P Sbjct: 121 STLDELCLLTTHGILHCLGYDHGTAEEEAEMFGIQRSILEEFLGRPAP 168 >gi|65321675|ref|ZP_00394634.1| COG0319: Predicted metal-dependent hydrolase [Bacillus anthracis str. A2012] Length = 156 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 14/158 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + E +E L + KA E+ ELS+ F D+ RI +N Sbjct: 5 IDFIDETEEVKEEYVN--LIREILGKAAQM------EKIEDGAELSVTFVDNERIREINR 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 +YR D+PT+V+SF MLGD++++ + +A G F+ L Sbjct: 57 DYRDKDQPTDVISFAMEEMGEGEMEIVGVEMPRMLGDLIISIPRAKEQAEEYGHSFDREL 116 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L +HGFLHLLGYDH+ ++D M G ++ LE G+ Sbjct: 117 GFLALHGFLHLLGYDHMTEEDEKEMFGRQKEXLEAFGL 154 >gi|170693392|ref|ZP_02884551.1| protein of unknown function UPF0054 [Burkholderia graminis C4D1M] gi|170141547|gb|EDT09716.1| protein of unknown function UPF0054 [Burkholderia graminis C4D1M] Length = 153 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 56/162 (34%), Positives = 76/162 (46%), Gaps = 14/162 (8%) Query: 9 PRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 P+L L + W + H L A + + EL++ F D+ Sbjct: 5 PKLTLNLQFPAAKAWPE--HKAVLPRATVAGWIKAALFA-------DGELTVRFVDAEEG 55 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 TLN YRG D TNVL+F A + D + GD++L ++E EA GK H Sbjct: 56 RTLNRTYRGKDYSTNVLTFAYAESEDD----PVTGDLILCCPVVEKEAAEQGKPLVAHYA 111 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH +++A ME LE IL LG DPY Sbjct: 112 HLLVHGTLHAQGYDHEVEEEAEEMEALETEILGKLGFPDPYR 153 >gi|255292981|dbj|BAH90078.1| hypothetical protein [uncultured bacterium] gi|255293017|dbj|BAH90113.1| hypothetical protein [uncultured bacterium] Length = 152 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 14/154 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I E+ + DE L +L V + + ELS+V D + Sbjct: 1 MTVDINNESGVEVDETGLVSLATFVLDQ----------LRIHPMAELSVVLVDEATMSAY 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM----LGDIVLAYEIIEIEANVLGKEFENHL 126 + +Y PT+VLSFP LGD+VL I +A G+E + Sbjct: 51 HEKYMNEPGPTDVLSFPMDELRPPSDDEEPPAGLLGDVVLCPTITSAQAAEHGREPDEEA 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 +L++HG LHL+G+DH ++ M GL+ +L Sbjct: 111 EYLLVHGILHLVGFDHGTPEEKAEMFGLKDRLLA 144 >gi|161507652|ref|YP_001577606.1| hypothetical protein lhv_1302 [Lactobacillus helveticus DPC 4571] gi|172048292|sp|A8YVM8|RRMF_LACH4 RecName: Full=Probable rRNA maturation factor gi|160348641|gb|ABX27315.1| hypothetical protein lhv_1302 [Lactobacillus helveticus DPC 4571] Length = 174 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + L+ +K K+N +E+S+ F D R +N +YR Sbjct: 5 DVTYHDEVGFLDDKNRNWQDWIMKLLLLAKKEIGKDNNLEMSINFVDEDRSHEINLKYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D +GD+ + +I+ + G F+ Sbjct: 65 KDRPTDVISFAIEDGEDAIDLSVFEDDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HGFLHL GYDH+ +A M G++ +LE+ G+ Sbjct: 125 YTVVHGFLHLNGYDHIKPDEAKEMFGIQGKVLEECGLP 162 >gi|119716145|ref|YP_923110.1| putative metalloprotease [Nocardioides sp. JS614] gi|166227491|sp|A1SHY8|RRMF_NOCSJ RecName: Full=Probable rRNA maturation factor gi|119536806|gb|ABL81423.1| protein of unknown function UPF0054 [Nocardioides sp. JS614] Length = 149 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 14/154 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I E+ D L L V + + + EL + D I L Sbjct: 1 MSIEILNESGHPLDVKRLAALSRFVMDRMRVH----------PLAELCIKAVDEPTIAQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 N ++ PT+VL+FP + +LGD+VL ++ + G E + Sbjct: 51 NEQWMEKAGPTDVLAFPMDELRPGLVDEDPEEGVLGDLVLCPDVAARQGETAGHGTEAEI 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 L +HG LHLLGYDH + ++ M GL+ +L Sbjct: 111 ELLTVHGILHLLGYDHAEPEEHREMFGLQDELLA 144 >gi|294782140|ref|ZP_06747466.1| metalloprotease [Fusobacterium sp. 1_1_41FAA] gi|294480781|gb|EFG28556.1| metalloprotease [Fusobacterium sp. 1_1_41FAA] Length = 162 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 2/155 (1%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LD ++N + + I + + ++ E + LS++ TD+ I+ + Sbjct: 5 LDFSYELDNEKYNEFIDKL-YEDAYLENYIKKVLEIEEVEAERPLYLSVLLTDNKNIQVI 63 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM-LGDIVLAYEIIEIEANVLGKEFENHLVHL 129 N EYR D PT+V+SF LGDI+++ E +E +++ FE ++ Sbjct: 64 NREYRDKDAPTDVISFAYHETDDFNIGPYDTLGDIIISLERVEEQSSEYNHSFEREFYYV 123 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + HG LH+LGYDH++++D VM E +IL G Sbjct: 124 LTHGILHILGYDHIEEEDKKVMREREEAILSSFGY 158 >gi|307730934|ref|YP_003908158.1| hypothetical protein BC1003_2914 [Burkholderia sp. CCGE1003] gi|307585469|gb|ADN58867.1| protein of unknown function UPF0054 [Burkholderia sp. CCGE1003] Length = 153 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 57/162 (35%), Positives = 76/162 (46%), Gaps = 14/162 (8%) Query: 9 PRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 P+L L + W + L V+ I F EL++ F D+ Sbjct: 5 PKLTLNLQFPAAKAWPEHKALLP------RATVAGWIKAALFAD---GELTVRFVDAEEG 55 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 TLN YRG D TNVL+F A + D + GD++L ++E EA GK H Sbjct: 56 RTLNRTYRGKDYSTNVLTFAYAESEDD----PVTGDLILCCPVVEKEAAEQGKPLVAHYA 111 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH +++A ME LE IL LG DPY Sbjct: 112 HLLVHGTLHAQGYDHEAEEEAEEMEALETEILGKLGFADPYR 153 >gi|294791926|ref|ZP_06757074.1| putative metalloprotease [Veillonella sp. 6_1_27] gi|294457156|gb|EFG25518.1| putative metalloprotease [Veillonella sp. 6_1_27] Length = 158 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 14/165 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I+ + I + E V K + ++ E+S++ ++ +I L Sbjct: 1 MYIHISYDEG-----IQEDSNIEAVIRKVCDEVSRVYGLEED---EMSILLCNNAKIHEL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 N EYRGID+PT+VLSF +LGD++++ E +A G FE L Sbjct: 53 NKEYRGIDRPTDVLSFALNEGDDYEGSEEEHHLLGDMIISLERTREQAIEYGHSFERELA 112 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI---NDPYE 169 +L H LH+LGYDH++D+D M E IL +LG + PY Sbjct: 113 YLTTHSCLHILGYDHMNDEDKKEMRTEEEFILGNLGYVREDAPYN 157 >gi|254671437|emb|CBA08953.1| conserved hypothetical protein [Neisseria meningitidis alpha153] Length = 251 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 16/178 (8%) Query: 1 MSVKKVNLPRLDLQ-----IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIV 55 M K P L LQ + ENA +L + E F + + + GY Sbjct: 81 MKRAK-KYPFLTLQRQRFHLNFENA--SSAANLPS--EHDFYRWAWSALKSGY----RRA 131 Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEI 113 ++SL+ D N +YRG D TNVLSF S + GD+++ +++ Sbjct: 132 DISLILLDEEAARAYNRDYRGKDYATNVLSFALNEGETLPCQVSEKLYGDLIICPQVVLK 191 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY D Sbjct: 192 EAAEQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAEIMEAEEIRLMRAAGYPNPYRED 249 >gi|315038513|ref|YP_004032081.1| Metalloprotease [Lactobacillus amylovorus GRL 1112] gi|312276646|gb|ADQ59286.1| Metalloprotease [Lactobacillus amylovorus GRL 1112] Length = 174 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + L+ +K K+N +E+S+ F D +N +YR Sbjct: 5 DITYNDEVGFLDDKRRDWQDWIMKLLLLAKKEIGKDNNLEMSINFVDEDCSHEINLKYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D +GD+ + +I+ + G F+ Sbjct: 65 KDRPTDVISFAIEDGEDSIDLAAFEDDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HGFLHL GYDH+ +A M G++ +LED G+ Sbjct: 125 YTVVHGFLHLNGYDHIKPDEAKEMFGIQGKVLEDYGLP 162 >gi|152967330|ref|YP_001363114.1| metalloprotease [Kineococcus radiotolerans SRS30216] gi|189040137|sp|A6WDG1|RRMF_KINRD RecName: Full=Probable rRNA maturation factor gi|151361847|gb|ABS04850.1| protein of unknown function UPF0054 [Kineococcus radiotolerans SRS30216] Length = 173 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 23/170 (13%) Query: 11 LDLQIAVENALWG----DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 + +++ E++ D + + L V + + + ELS++ D Sbjct: 1 MSIEVVDESSFAQGRGVDTVEVSHLARYVLDEMRVH----------PLAELSVLMVDVEA 50 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGC----SSLMLGDIVLAYEIIEIEANVLGKEF 122 + L+ ++ PT+V+SFP +LGD+V+ ++ +A G Sbjct: 51 MARLHVQWMDEPGPTDVMSFPMDQLRPGREGRTSEPGLLGDVVVCPQVAAEQAKASGHAT 110 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI----LEDLGIN-DP 167 + ++ L+ HG LHLLGYDH + + M L+R + L +G DP Sbjct: 111 ADEVLLLVAHGILHLLGYDHAEPDEEREMFTLQRRLVLGFLARIGRPGDP 160 >gi|255327126|ref|ZP_05368201.1| putative metalloprotease AAur_2230 [Rothia mucilaginosa ATCC 25296] gi|255295744|gb|EET75086.1| putative metalloprotease AAur_2230 [Rothia mucilaginosa ATCC 25296] Length = 173 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 10/168 (5%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKEN------IVELSLVFTD 63 +++ E G + F + ++++ LS+ + Sbjct: 1 MAEIEFDCEEPATGADPVTDAFIRESFEAVDTEVLTRLVEHAFKRMHLADDTYLSIAIVN 60 Query: 64 SHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL---MLGDIVLAYEIIEIEANVLGK 120 +E ++ E+ + T+V+SFP + MLGDI+L + + G Sbjct: 61 EDEMERVHIEWMDLPGATDVMSFPMDELEPGTPENPSSGMLGDIILCPPVAARQGADAGH 120 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED-LGINDP 167 + L L HG LH LGYDH ++ M G++RSILE+ LG P Sbjct: 121 STLDELCLLTTHGILHCLGYDHGTAEEEAEMFGIQRSILEEFLGRPAP 168 >gi|227878695|ref|ZP_03996609.1| metal-dependent hydrolase [Lactobacillus crispatus JV-V01] gi|256843289|ref|ZP_05548777.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256850354|ref|ZP_05555782.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|262046498|ref|ZP_06019460.1| metal-dependent hydrolase [Lactobacillus crispatus MV-3A-US] gi|293380656|ref|ZP_06626707.1| metalloprotein, YbeY/ UPF0054family [Lactobacillus crispatus 214-1] gi|295693064|ref|YP_003601674.1| metalloprotease [Lactobacillus crispatus ST1] gi|312978180|ref|ZP_07789924.1| putative metalloprotease [Lactobacillus crispatus CTV-05] gi|227861710|gb|EEJ69315.1| metal-dependent hydrolase [Lactobacillus crispatus JV-V01] gi|256614709|gb|EEU19910.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256712751|gb|EEU27744.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|260573369|gb|EEX29927.1| metal-dependent hydrolase [Lactobacillus crispatus MV-3A-US] gi|290922784|gb|EFD99735.1| metalloprotein, YbeY/ UPF0054family [Lactobacillus crispatus 214-1] gi|295031170|emb|CBL50649.1| Metalloprotease [Lactobacillus crispatus ST1] gi|310894898|gb|EFQ43968.1| putative metalloprotease [Lactobacillus crispatus CTV-05] Length = 174 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + + L+ +K K+N +E+S+ F D R +N +YR Sbjct: 5 DITYNDEVGFLDDEKRNWQDWIMKLLLLAKKEIGKDNNLEMSINFVDEDRSHEINLKYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D +GD+ + +I+ + G F+ Sbjct: 65 KDRPTDVISFAIEDGEDSIDLAAFADDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + I+HGFLHL GYDH+ +A M G++ +LED G+ Sbjct: 125 YTIVHGFLHLNGYDHIKPDEAKEMFGIQGKVLEDYGLP 162 >gi|223044370|ref|ZP_03614404.1| conserved hypothetical protein [Staphylococcus capitis SK14] gi|314933742|ref|ZP_07841107.1| putative metalloprotease [Staphylococcus caprae C87] gi|222442239|gb|EEE48350.1| conserved hypothetical protein [Staphylococcus capitis SK14] gi|313653892|gb|EFS17649.1| putative metalloprotease [Staphylococcus caprae C87] Length = 156 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 44/127 (34%), Positives = 65/127 (51%), Gaps = 5/127 (3%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS----- 97 +K ++ ELS+ F D I+ +N YR DK T+V+SF + Sbjct: 26 TFAKKQEHIDSEAELSVTFVDKDEIQNINKMYRDKDKVTDVISFALEEDEPEIDMNELDI 85 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 +LGDI++ ++ +A G FE L L +HGFLHLLGYDH+ D+D M G + + Sbjct: 86 PRVLGDIIICTDVAHEQAENYGHSFERELGFLALHGFLHLLGYDHMTDEDEKEMFGRQDA 145 Query: 158 ILEDLGI 164 IL G+ Sbjct: 146 ILNAYGL 152 >gi|228476121|ref|ZP_04060829.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|228269944|gb|EEK11424.1| conserved hypothetical protein [Staphylococcus hominis SK119] Length = 153 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 3/124 (2%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLM 100 +K ELS+ F D I+ +N YR DK T+V+SF D + Sbjct: 27 FAKEKENIHEDAELSVTFVDKDEIQEINKNYRDKDKVTDVISFALEEDEPDIIGLDIPRV 86 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LGDI++ ++ + +A FE L L +HGFLHLLGYDH++++D M G ++ IL Sbjct: 87 LGDIIICTDVAKEQAESYNHSFERELGFLALHGFLHLLGYDHMNEEDEKEMFGRQKEILN 146 Query: 161 DLGI 164 G+ Sbjct: 147 AYGL 150 >gi|302381346|ref|YP_003817169.1| hypothetical protein Bresu_0231 [Brevundimonas subvibrioides ATCC 15264] gi|302191974|gb|ADK99545.1| protein of unknown function UPF0054 [Brevundimonas subvibrioides ATCC 15264] Length = 153 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 61/156 (39%), Positives = 79/156 (50%), Gaps = 10/156 (6%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 +++ VE W D I + + E + ++ TD + LN Sbjct: 2 IEVEVEADDWTDAID---------DVEAVVERAAVAALGEQAGGVVVLLTDDATVRDLNA 52 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +RG D+PTNVLSFP A D LGDIVLAY + EA GK HL HL++H Sbjct: 53 RFRGKDRPTNVLSFPAAD-MPDTGGPRPLGDIVLAYGVCAGEATAQGKTLTGHLTHLVVH 111 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 G LHLLG DH D+ +A ME ER+IL LG+ DPY Sbjct: 112 GVLHLLGRDHEDEAEAETMEAEERTILARLGVADPY 147 >gi|260101322|ref|ZP_05751559.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260084907|gb|EEW69027.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] Length = 174 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + L+ +K K+N +E+S+ F D R +N +YR Sbjct: 5 DVTYHDEVGFLDDKNRDWRDWIMKLLLLAKKEIGKDNNLEMSINFVDEDRSHEINLKYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D +GD+ + +I+ + G F+ Sbjct: 65 KDRPTDVISFAIQDGEDAIDLSAFEDDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HGFLHL GYDH+ +A M G++ +LE+ G+ Sbjct: 125 YTVVHGFLHLNGYDHIKPDEAKEMFGIQGKVLEECGLP 162 >gi|323466382|gb|ADX70069.1| Hypothetical cytosolic protein [Lactobacillus helveticus H10] Length = 174 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + L+ +K K+N +E+S+ F D R +N +YR Sbjct: 5 DVTYHDEVGFLDGKNRDWQDWIMKLLLLAKKEIGKDNNLEMSINFVDEDRSHEINLKYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D +GD+ + +I+ + G F+ Sbjct: 65 KDRPTDVISFAIEDGEDAIDLSAFEDDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HGFLHL GYDH+ +A M G++ +LE+ G+ Sbjct: 125 YTVVHGFLHLNGYDHIKPDEAKEMFGIQGKVLEECGLP 162 >gi|269798052|ref|YP_003311952.1| hypothetical protein Vpar_0991 [Veillonella parvula DSM 2008] gi|269094681|gb|ACZ24672.1| protein of unknown function UPF0054 [Veillonella parvula DSM 2008] Length = 158 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 14/165 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I+ + I + E + K + ++ E+S++ D+ +I L Sbjct: 1 MYIHISYDEG-----IEEDSNIEAIIRKVCDEVSRVYGLEED---EMSILLCDNAKIHEL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 N EYRGID+PT+VLSF +LGD++++ E +A G FE L Sbjct: 53 NKEYRGIDRPTDVLSFALNEGDDYEGSEEEHHLLGDMIISLERTREQAIEYGHSFERELA 112 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI---NDPYE 169 +L H LH+LGYDH++D++ M E IL +LG + PY Sbjct: 113 YLTTHSCLHILGYDHMNDEEKKEMRTEEEFILGNLGYVREDAPYN 157 >gi|73662495|ref|YP_301276.1| hypothetical protein SSP1186 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642702|sp|Q49Y13|RRMF_STAS1 RecName: Full=Probable rRNA maturation factor gi|72495010|dbj|BAE18331.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 153 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 3/125 (2%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---CSSL 99 +K E ELS+ F D I+ +N YR DK T+V+SF + Sbjct: 26 TFAKEQENIEEEAELSVTFVDKDEIQEINKMYRDKDKVTDVISFALEEDEPEITGIEMPR 85 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGDI++ ++ + +A+ G FE L L +HGFLHLLGYDH++++D M G + IL Sbjct: 86 VLGDIIICTDVAQEQADSYGHSFERELGFLALHGFLHLLGYDHMNEQDEKQMFGRQDQIL 145 Query: 160 EDLGI 164 G+ Sbjct: 146 NAYGL 150 >gi|323527297|ref|YP_004229450.1| hypothetical protein BC1001_2976 [Burkholderia sp. CCGE1001] gi|323384299|gb|ADX56390.1| protein of unknown function UPF0054 [Burkholderia sp. CCGE1001] Length = 153 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 57/162 (35%), Positives = 75/162 (46%), Gaps = 14/162 (8%) Query: 9 PRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 P+L L + W + L V I F EL++ F D+ Sbjct: 5 PKLTLNLQFPAAKAWPEHKALLP------RATVGGWIKAALFAD---GELTVRFVDAEEG 55 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 TLN YRG D TNVL+F A + D + GD++L ++E EA GK H Sbjct: 56 RTLNRTYRGKDYSTNVLTFAYAESEDD----PVTGDLILCCPVVEKEAAEQGKPLVAHYA 111 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH +++A ME LE IL LG DPY Sbjct: 112 HLLVHGTLHAQGYDHEVEEEAEEMEALETEILGKLGFPDPYR 153 >gi|319409916|emb|CBY90241.1| putative metalloprotease NMB0538 [Neisseria meningitidis WUE 2594] Length = 251 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 112 AERDFYRWAWSALKNEY----RRADISLILLDEEEARDYNRDYRGKDYATNVLSFALNEG 167 Query: 92 S--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 168 ETLPCQVSEKLYGDLIICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAE 227 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 228 IMEAEEIRLMRAAGFPNPYQED 249 >gi|257068880|ref|YP_003155135.1| hypothetical protein Bfae_17240 [Brachybacterium faecium DSM 4810] gi|256559698|gb|ACU85545.1| conserved hypothetical protein TIGR00043 [Brachybacterium faecium DSM 4810] Length = 153 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I E DE L VF E+S++F D +E L Sbjct: 1 MTIEIRNETTTVVDEREFIELARFVFEAM----------HLHPATEMSILFVDEAAMEKL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD----GCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ + PT+V+SFP +LGD+VL + +A G + Sbjct: 51 HVQWLDLPGPTDVMSFPMDELIPGTPQQPAPEGLLGDVVLCPSVAAAQAAEAGHSPVEEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L +H LHLLGYDH+++ + M L+R +L Sbjct: 111 LLLTVHSILHLLGYDHMEEDERTEMFDLQRKLL 143 >gi|256845042|ref|ZP_05550500.1| metal-binding protein [Fusobacterium sp. 3_1_36A2] gi|256718601|gb|EEU32156.1| metal-binding protein [Fusobacterium sp. 3_1_36A2] Length = 162 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 1/130 (0%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-ASSD 94 + ++ + + LSL+ TD+ I+ +N EYR D PT+V+SF + Sbjct: 29 LENYIKKVLELEKVESDRPLYLSLLLTDNENIQVINREYRDKDAPTDVISFAYHETEDFN 88 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 LGDI+++ E +E +A FE +++ HG LH+LGYDH++++D +M Sbjct: 89 IGPYDTLGDIIISLERVEEQAGEYNHSFEREFYYVLTHGILHILGYDHIEEEDKKIMRKR 148 Query: 155 ERSILEDLGI 164 E +IL G Sbjct: 149 EEAILSSFGY 158 >gi|229820243|ref|YP_002881769.1| protein of unknown function UPF0054 [Beutenbergia cavernae DSM 12333] gi|259646478|sp|C5C494|RRMF_BEUC1 RecName: Full=Probable rRNA maturation factor gi|229566156|gb|ACQ80007.1| protein of unknown function UPF0054 [Beutenbergia cavernae DSM 12333] Length = 150 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + DE L V + ELS++F D + L Sbjct: 1 MSTEVSNESPVTVDEAEFAALARYVLDQ----------LHVHPQAELSILFVDIPAMSDL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD----GCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + + PT+VLSFP +LGD+VL E+ +A G E L Sbjct: 51 HERWMDEPGPTDVLSFPMDELRPGRDDAPSGPGVLGDVVLCPEVAAEQARTAGHSTEEEL 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L HG LHLLG+DH + + M L+R +L Sbjct: 111 LLLTTHGILHLLGFDHAEPDEEREMFDLQRKLL 143 >gi|302670671|ref|YP_003830631.1| hypothetical protein bpr_I1311 [Butyrivibrio proteoclasticus B316] gi|302395144|gb|ADL34049.1| hypothetical protein bpr_I1311 [Butyrivibrio proteoclasticus B316] Length = 167 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 62/132 (46%), Gaps = 17/132 (12%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------------- 96 VE+SL TD I +N E+R ID PT+VLSFP G Sbjct: 33 KCPYEVEISLTITDDEGIREINNEFRQIDSPTDVLSFPNVSYDEPGDFSVIDGEQKVDLL 92 Query: 97 ----SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 ++ GDIV+ + +A G + L+ H LHL GYDH+++++A VME Sbjct: 93 NPDTGNISFGDIVINVNRVRSQALEYGHSEKREFAFLVAHSMLHLCGYDHMEEQEAAVME 152 Query: 153 GLERSILEDLGI 164 G + IL LGI Sbjct: 153 GKQNDILTYLGI 164 >gi|154487439|ref|ZP_02028846.1| hypothetical protein BIFADO_01291 [Bifidobacterium adolescentis L2-32] gi|154083957|gb|EDN83002.1| hypothetical protein BIFADO_01291 [Bifidobacterium adolescentis L2-32] Length = 181 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP + M LGDIVL + Sbjct: 36 DLTIMFVDPDPIAQLHMRWMNLEGPTDVMSFPMDELRPGDGGTEMEGVLGDIVLCPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV + M GL+R +L Sbjct: 96 QQALAAGHSTMEEMMLLTIHGILHLLGYDHVTPEQERQMFGLQRQLL 142 >gi|164686281|ref|ZP_02210311.1| hypothetical protein CLOBAR_02719 [Clostridium bartlettii DSM 16795] gi|164601883|gb|EDQ95348.1| hypothetical protein CLOBAR_02719 [Clostridium bartlettii DSM 16795] Length = 153 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 6/154 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 +++ +++ D++ + + + Y ++ E+SL F D+ I LN Sbjct: 1 MELIIDDR--QDKLEVSEELIEKIKDIILECLD--YEDYDDNYEVSLSFVDNKEIHELNK 56 Query: 73 EYRGIDKPTNVLSFPT--AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 EYRGID+ T+VLSFP LGDIV++ E ++ FE + L+ Sbjct: 57 EYRGIDRATDVLSFPLLVEDEFGVDFGEESLGDIVISLERAFEQSREYNHSFEREVCFLV 116 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 H HLLGYDH +++ M E IL LGI Sbjct: 117 CHSMFHLLGYDHDTEENTKEMSQKEEYILNKLGI 150 >gi|256545613|ref|ZP_05472971.1| metalloprotease [Anaerococcus vaginalis ATCC 51170] gi|256398690|gb|EEU12309.1| metalloprotease [Anaerococcus vaginalis ATCC 51170] Length = 164 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 12/159 (7%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 + + + N E E K + ++ K + E E+SL F D +I LN Sbjct: 10 KMNLIINN-----ETKEEVNIENYLEKVIREVL-KLEDIDEKKCEISLSFVDEEKIRQLN 63 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGDIVLAYEIIEIEANVLGKEFENH 125 ++R ID+ T+VLSFP ++ ++ MLGD+V+ ++ +A+ LG FE Sbjct: 64 KDFRSIDRVTDVLSFPIEDFFNEDRENILEKPYLMLGDVVICLDVARKQADDLGHSFERE 123 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +++L H LHLLGYDH++D D +M E+ ++++LG+ Sbjct: 124 VMYLTCHSILHLLGYDHIEDDDKKIMRKREKEVMKNLGV 162 >gi|227544913|ref|ZP_03974962.1| metal-dependent hydrolase [Lactobacillus reuteri CF48-3A] gi|300910060|ref|ZP_07127520.1| probable metalloprotease [Lactobacillus reuteri SD2112] gi|227185125|gb|EEI65196.1| metal-dependent hydrolase [Lactobacillus reuteri CF48-3A] gi|300892708|gb|EFK86068.1| probable metalloprotease [Lactobacillus reuteri SD2112] Length = 160 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 17/165 (10%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +DL+I + L + + + + E+SL F ++ I+ Sbjct: 1 MMDLEIFDQTTA-----QLPNEQLEMVRDLLQYAAKELSLSEN--TEMSLTFVNNPEIKK 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCS----------SLMLGDIVLAYEIIEIEANVLG 119 LN +YR +D+ T+VLSF A + + LGD+ ++ + + +A LG Sbjct: 54 LNAQYRNVDRATDVLSFAAEEAGDETPIIMDPQMAAEIPVNLGDLFISIDKVAEQAKFLG 113 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + L L +HGFLHL GYDH + D M L+R IL+ G+ Sbjct: 114 HSVDRELGFLAVHGFLHLNGYDHEEPADEEKMFKLQREILDGYGL 158 >gi|330686100|gb|EGG97721.1| translation metalloprotein YbeY [Staphylococcus epidermidis VCU121] Length = 155 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 5/126 (3%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS-----S 98 +K ELS+ F D I+ +N YR DK T+V+SF D Sbjct: 27 FAKQEEQINEDAELSITFVDKSEIQEINKMYRDKDKVTDVISFALEEDEPDIDMSEFNIP 86 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +LGDI++ ++ + ++ G FE L L +HGFLHLLGYDH++++D M G + +I Sbjct: 87 RVLGDIIICTDVAQEQSESYGHSFERELGFLALHGFLHLLGYDHMNEEDEKEMFGRQDAI 146 Query: 159 LEDLGI 164 L G+ Sbjct: 147 LNAYGL 152 >gi|325956929|ref|YP_004292341.1| metalloprotease [Lactobacillus acidophilus 30SC] gi|325333494|gb|ADZ07402.1| Metalloprotease [Lactobacillus acidophilus 30SC] gi|327183709|gb|AEA32156.1| metalloprotease [Lactobacillus amylovorus GRL 1118] Length = 174 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + + L+ +K K+N +E+S+ F D R +N +YR Sbjct: 5 DITYNDEVGFLDDKKRDWQDWIMKLLLLAKKEIGKDNNLEMSINFVDEDRSHEINLKYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D +GD+ + +I+ + G F+ Sbjct: 65 KDRPTDVISFAIEDGEDSIDLAAFEDDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HGFLHL GYDH+ +A M G++ +LED G+ Sbjct: 125 YTVVHGFLHLNGYDHIKPDEAKEMFGIQGKVLEDYGLP 162 >gi|296119867|ref|ZP_06838421.1| putative metalloprotease [Corynebacterium ammoniagenes DSM 20306] gi|295967021|gb|EFG80292.1| putative metalloprotease [Corynebacterium ammoniagenes DSM 20306] Length = 191 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 18/159 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++ E+ D ++ L +V + G VEL++ D IE L Sbjct: 1 MSIEFFNESGF--DGVNEEMLIDVA-------SFALGAMDVNPDVELTMTCVDLETIEEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKE 121 + + ++ PT+V+SFP + MLGDIVL E +A+ G Sbjct: 52 HVRWMDLEGPTDVMSFPIDEITPGAMTPRPDAPDMGPAMLGDIVLCPAFAERQADAAGHS 111 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + L L HG LHLLGYDH + M L+ +L Sbjct: 112 LSHELALLTTHGCLHLLGYDHGTPSEEQEMFALQNELLA 150 >gi|125624293|ref|YP_001032776.1| putative metalloprotease [Lactococcus lactis subsp. cremoris MG1363] gi|166231388|sp|A2RL98|RRMF_LACLM RecName: Full=Probable rRNA maturation factor gi|124493101|emb|CAL98065.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris MG1363] gi|300071075|gb|ADJ60475.1| putative metalloprotease [Lactococcus lactis subsp. cremoris NZ9000] Length = 162 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 22/168 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E EI +T + FA + E+S+ F D+ R L Sbjct: 1 MYVELVDETGQVPSEIIEQTKEVLAFAAK--------KLDLKESTEMSVTFVDNARSHEL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG--------------CSSLMLGDIVLAYEIIEIEAN 116 N +YR D+PT+V+S S+ +G++ ++ + +A Sbjct: 53 NLQYRETDRPTDVISLEYKPDESEFFFDEDMELPEELLEEMDPFIGELFISIDKAAEQAA 112 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G E L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 113 DYGHSIEREYGWLAVHGFLHINGYDHYTPEEESEMFALQEEILTAYGL 160 >gi|332969799|gb|EGK08810.1| metal-dependent hydrolase [Psychrobacter sp. 1501(2011)] Length = 184 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 3/119 (2%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML--GDIVLAYEI 110 +L + TDS LN E R D TN+LS+P+ + L + G++V+ +E+ Sbjct: 63 KPKQLGVYLTDSVEGRELNLEARDKDYATNILSYPSDLPAFILTEMLEIALGELVICHEV 122 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPY 168 +E +A K +H HL++HG LHLLG+DH ++ MEG E +ILE LGI +PY Sbjct: 123 VEQQAREQHKTVADHATHLLVHGILHLLGFDHELGQEEQDEMEGFEIAILEKLGIANPY 181 >gi|315651385|ref|ZP_07904410.1| metal-dependent hydrolase [Eubacterium saburreum DSM 3986] gi|315486344|gb|EFU76701.1| metal-dependent hydrolase [Eubacterium saburreum DSM 3986] Length = 168 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 22/170 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I+ E+ + + E + K V+ + + E+S+ D I + Sbjct: 5 MTVEISYESE---KSLDIP--YEDIINKMVAASLD--FENCPYEAEVSVTIVDDEEIRKI 57 Query: 71 NFEYRGIDKPTNVLSFPTAFAS---------------SDGCSSLMLGDIVLAYEIIEIEA 115 N EYRGIDK T+VLSFP + L+LGDI+L+ E I +A Sbjct: 58 NSEYRGIDKSTDVLSFPFNEFESPGNFDDIEESVDAFNPESGELLLGDIILSTEHIIEQA 117 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G L L++H LHL+GYDH+ D+D +ME +R IL+ GI+ Sbjct: 118 REYGHSETRELAFLVVHSMLHLMGYDHIADEDRVIMEDRQRKILDLEGIS 167 >gi|227892552|ref|ZP_04010357.1| metal-dependent hydrolase [Lactobacillus ultunensis DSM 16047] gi|227865673|gb|EEJ73094.1| metal-dependent hydrolase [Lactobacillus ultunensis DSM 16047] Length = 174 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + + L+ +K K N +E+S+ F D R +N +YR Sbjct: 5 DITYNDEVGFLDDKKRDWQDWIMKLLLLAKKEIGKTNNLEMSINFVDEDRSHEINLKYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D +GD+ + +I+ + G F+ Sbjct: 65 KDRPTDVISFAIEDGEDSIDLAAFEDDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HGFLHL GYDH+ ++A M G++ +LED G+ Sbjct: 125 YTVVHGFLHLNGYDHIKPEEAKEMFGIQGKVLEDYGLP 162 >gi|119025739|ref|YP_909584.1| putative metalloprotease [Bifidobacterium adolescentis ATCC 15703] gi|145558837|sp|A1A1B9|RRMF_BIFAA RecName: Full=Probable rRNA maturation factor gi|118765323|dbj|BAF39502.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703] Length = 181 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP + M LGDIVL + Sbjct: 36 DLTIMFVDPDPIAQLHMRWMNLEGPTDVMSFPMDELRPGDGGTEMEGVLGDIVLCPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV + M GL+R +L Sbjct: 96 QQALAAGHSTMEEMMLLTIHGILHLLGYDHVTPEQERQMFGLQRQLL 142 >gi|325127628|gb|EGC50544.1| hypothetical protein TIGR00043 [Neisseria meningitidis N1568] Length = 171 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + GY ++SL+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKSGY----RRADISLILLDEEAARDYNRDYRGKDYATNVLSFALNEG 87 Query: 92 S--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 88 ETLPCQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY D Sbjct: 148 IMEAEEIRLMRAAGYPNPYRED 169 >gi|328465884|gb|EGF37067.1| hypothetical protein AAULH_07516 [Lactobacillus helveticus MTCC 5463] Length = 174 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + L+ +K K+N +E+S+ F D +R +N +YR Sbjct: 5 DVTYHDEVGFLDDKNRDWRDWIMKLLLLAKKEIGKDNNLEMSINFVDEYRSHEINLKYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D +GD+ + +I+ + G F+ Sbjct: 65 KDRPTDVISFAIQDGEDAIDLSAFEDDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HGFLHL GYDH+ +A M G++ +LE+ G+ Sbjct: 125 YTVVHGFLHLNGYDHIKPDEAKEMFGIQGKVLEECGLP 162 >gi|148243345|ref|YP_001228502.1| metal-dependent hydrolase [Synechococcus sp. RCC307] gi|172047894|sp|A5GW90|RRMF_SYNR3 RecName: Full=Probable rRNA maturation factor gi|147851655|emb|CAK29149.1| Predicted metal-dependent hydrolase [Synechococcus sp. RCC307] Length = 160 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 5/150 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++L +A E L A+ + L S +K + L L F D I L Sbjct: 7 IELDLAYLGPDPLGEDRWVELLSSWLAQLQAELPSP---LKADAYSLGLQFCDDAAIAEL 63 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N ++R KPT+VLSF + + + LGDIV++ E +A G + L+ Sbjct: 64 NGQWRQQPKPTDVLSFAAQEDAPEPLEGLPIELGDIVISIPTAERQAPEHGHSLQQELLF 123 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L HG LHLLG+DH D+ M + ++ Sbjct: 124 LASHGLLHLLGWDHPDEASLAAMLSRQDAL 153 >gi|237738285|ref|ZP_04568766.1| metal-binding protein [Fusobacterium mortiferum ATCC 9817] gi|229420165|gb|EEO35212.1| metal-binding protein [Fusobacterium mortiferum ATCC 9817] Length = 155 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 6/142 (4%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D++ K + + E V +SL+FT + I+ +N EYR D+PT+V Sbjct: 15 DDLVNEEEIREYVQKVLEK-----EYESEAPVYMSLLFTGNDEIQVINREYRDKDQPTDV 69 Query: 84 LSFPTAF-ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +SF D LGDIV++ E + +A + L +++ HG LHLLGYDH Sbjct: 70 ISFAYHETEDFDIGPYDTLGDIVISLERVVEQAKEYNHSDKRELFYVLTHGILHLLGYDH 129 Query: 143 VDDKDACVMEGLERSILEDLGI 164 ++++D M E IL G Sbjct: 130 IEEEDKKEMRAKEEEILGSFGY 151 >gi|15673068|ref|NP_267242.1| putative metalloprotease [Lactococcus lactis subsp. lactis Il1403] gi|281491585|ref|YP_003353565.1| hypothetical protein LLKF_1113 [Lactococcus lactis subsp. lactis KF147] gi|29428253|sp|Q9CGL0|RRMF_LACLA RecName: Full=Probable rRNA maturation factor gi|12724042|gb|AAK05184.1|AE006341_3 hypothetical protein L94534 [Lactococcus lactis subsp. lactis Il1403] gi|281375303|gb|ADA64816.1| Hypothetical protein LLKF_1113 [Lactococcus lactis subsp. lactis KF147] gi|326406636|gb|ADZ63707.1| Putative metalloprotease [Lactococcus lactis subsp. lactis CV56] Length = 162 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 22/168 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E EI +T + FA NL + E+S+ F D+ R L Sbjct: 1 MYVELVDETGQVPSEIIEQTKEVLAFAAKKLNL--------KESTEMSVTFVDNARSHEL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG--------------CSSLMLGDIVLAYEIIEIEAN 116 N +YR D+PT+V+S S+ +G++ ++ + +A Sbjct: 53 NLQYRETDRPTDVISLEYKPDESEFFFDEDMELPEELLEEMDPFIGELFISIDKAAEQAA 112 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G E L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 113 DYGHSIEREYGWLAVHGFLHINGYDHYTPEEESEMFGLQEEILTAYGL 160 >gi|254804422|ref|YP_003082643.1| hypothetical protein NMO_0420 [Neisseria meningitidis alpha14] gi|254667965|emb|CBA04232.1| conserved hypothetical protein [Neisseria meningitidis alpha14] Length = 251 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 112 AERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 167 Query: 92 SSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 168 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGTLHLMGYDHIEDDEAE 227 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 228 IMEAEEIRLMLAAGFPNPYQED 249 >gi|306822850|ref|ZP_07456226.1| probable metalloprotease [Bifidobacterium dentium ATCC 27679] gi|309801136|ref|ZP_07695265.1| translation metalloprotein YbeY [Bifidobacterium dentium JCVIHMP022] gi|304553482|gb|EFM41393.1| probable metalloprotease [Bifidobacterium dentium ATCC 27679] gi|308222025|gb|EFO78308.1| translation metalloprotein YbeY [Bifidobacterium dentium JCVIHMP022] Length = 181 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP ++M LGDIV+ + Sbjct: 36 DLTIMFVDPDPIAQLHMRWMNLEGPTDVMSFPMDELRPGDGRTVMEGVLGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV + M GL+R +L Sbjct: 96 QQALAAGHSTMEEMMLLTIHGILHLLGYDHVTPEQERQMFGLQRQLL 142 >gi|291459261|ref|ZP_06598651.1| putative metalloprotease [Oribacterium sp. oral taxon 078 str. F0262] gi|291418515|gb|EFE92234.1| putative metalloprotease [Oribacterium sp. oral taxon 078 str. F0262] Length = 165 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 72/170 (42%), Gaps = 23/170 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E E+ L + + ++ Y E+S++FTD+ I + Sbjct: 1 MTINLDFETEK-RLELPLEEIITEICGAVIA------YEHCPFSCEISVLFTDNEGIRAI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFAS----------------SDGCSSLMLGDIVLAYEIIEIE 114 N + RGID PT+VLSFP A + LGDIVL + IE + Sbjct: 54 NRDSRGIDAPTDVLSFPMAEYKRPGDFSIFREGDPELFNPDTGDFFLGDIVLNLDRIESQ 113 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 A G L L H LHL GYDH+ + + ME +R ILE G Sbjct: 114 AREYGHSERRELAFLTAHSMLHLFGYDHMAEGERSEMERRQREILEGKGY 163 >gi|90581603|ref|ZP_01237394.1| hypothetical protein VAS14_00556 [Vibrio angustum S14] gi|90437186|gb|EAS62386.1| hypothetical protein VAS14_00556 [Vibrio angustum S14] Length = 154 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 49/135 (36%), Positives = 77/135 (57%), Gaps = 2/135 (1%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 ++ + E+++ D LN EYRG D+PTNVLSFP + G Sbjct: 20 EAEFQQWLNAAVIPFQADAEVTIRLVDEKESHALNLEYRGKDRPTNVLSFPFE--APPGM 77 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 +LGD+++ +++E EA K + H H+++HG LHLLGYDH++D++A MEGLE Sbjct: 78 ELELLGDLIICRQVVEKEALEQNKPLKAHWAHMVVHGSLHLLGYDHIEDEEAEEMEGLET 137 Query: 157 SILEDLGINDPYEVD 171 I++++G DPY + Sbjct: 138 EIMQNMGFVDPYISE 152 >gi|296327852|ref|ZP_06870388.1| metal dependent hydrolase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154986|gb|EFG95767.1| metal dependent hydrolase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 162 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 1/130 (0%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-ASSD 94 + +++ + + LSL+ TD+ I+ +N EYR D PT+V+SF + Sbjct: 29 LENYIKKVLNLEKIESDRPLYLSLLLTDNENIQVINREYRDKDAPTDVISFAYHETEDFN 88 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 LGDI+++ E +E +A+ FE +++ HG LH+LGYDH++++D +M Sbjct: 89 IGPYDTLGDIIISLERVEEQASEYNHSFEREFYYVLTHGILHILGYDHIEEEDKKLMRER 148 Query: 155 ERSILEDLGI 164 E +IL G Sbjct: 149 EEAILSSFGY 158 >gi|323486952|ref|ZP_08092267.1| hypothetical protein HMPREF9474_04018 [Clostridium symbiosum WAL-14163] gi|323692000|ref|ZP_08106248.1| hypothetical protein HMPREF9475_01111 [Clostridium symbiosum WAL-14673] gi|323399724|gb|EGA92107.1| hypothetical protein HMPREF9474_04018 [Clostridium symbiosum WAL-14163] gi|323503923|gb|EGB19737.1| hypothetical protein HMPREF9475_01111 [Clostridium symbiosum WAL-14673] Length = 165 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 23/171 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I E +++L E + V+ + Y E++++ TD+ I + Sbjct: 1 MTINIEYEAE---KKLNLP--YESIIEDVVNASLD--YEKCPYEAEVNVILTDNAEIRRI 53 Query: 71 NFEYRGIDKPTNVLSFPT----------------AFASSDGCSSLMLGDIVLAYEIIEIE 114 N E+R ID PT+VLSFP + L+LGDIV++ + +E + Sbjct: 54 NREFRQIDSPTDVLSFPMGDFDVPSDFERMEEQSEDYFNPETGELLLGDIVISVDKVEEQ 113 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 A G L L+ H LHL GYDH+++++ ME + IL G Sbjct: 114 AEKYGHSQTRELAFLVAHSMLHLCGYDHMEEQERIAMEKRQEEILSTGGFA 164 >gi|171743045|ref|ZP_02918852.1| hypothetical protein BIFDEN_02170 [Bifidobacterium dentium ATCC 27678] gi|283455944|ref|YP_003360508.1| hypothetical protein BDP_1043 [Bifidobacterium dentium Bd1] gi|171278659|gb|EDT46320.1| hypothetical protein BIFDEN_02170 [Bifidobacterium dentium ATCC 27678] gi|283102578|gb|ADB09684.1| Conserved hypothetical protein [Bifidobacterium dentium Bd1] Length = 181 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP ++M LGDIV+ + Sbjct: 36 DLTIMFVDPDPIAQLHMRWMNLEGPTDVMSFPMDELRPGDGRTVMEGVLGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV + M GL+R +L Sbjct: 96 QQALAAGHSTMEEMMLLTIHGILHLLGYDHVTPEQERQMFGLQRQLL 142 >gi|315282362|ref|ZP_07870789.1| putative metalloprotease [Listeria marthii FSL S4-120] gi|313613994|gb|EFR87711.1| putative metalloprotease [Listeria marthii FSL S4-120] Length = 161 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 18/168 (10%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + L++ + E + DE L E + + GY E ELSL FT + I Sbjct: 1 MTVLEIDLLDETSKLPDEDK--ELVENILQ------FAAGYLKIEQGTELSLTFTTNEGI 52 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCS----------SLMLGDIVLAYEIIEIEANV 117 +N EYR D+ T+V+SF MLGDI+++ E E +A Sbjct: 53 REINREYRDKDQATDVISFALEEMGDGETEIDWGEFDLETPRMLGDIIISTEKAEEQAKD 112 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G L L +HG LHLLGYDH++ + VM GL++ +L+ G+ Sbjct: 113 YGHTKARELGFLAVHGLLHLLGYDHMEPDEEKVMFGLQKEVLDAYGLE 160 >gi|237744342|ref|ZP_04574823.1| metal-binding protein [Fusobacterium sp. 7_1] gi|256027792|ref|ZP_05441626.1| metal-binding protein [Fusobacterium sp. D11] gi|289765747|ref|ZP_06525125.1| metal-binding protein [Fusobacterium sp. D11] gi|229431571|gb|EEO41783.1| metal-binding protein [Fusobacterium sp. 7_1] gi|289717302|gb|EFD81314.1| metal-binding protein [Fusobacterium sp. D11] Length = 163 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 1/135 (0%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-ASSD 94 + ++ + LSL+ TD+ I+ +N EYR D PT+V+SF + Sbjct: 29 LENYIKKVLELEEIESNRPLYLSLLLTDNRNIQVINREYRDKDAPTDVISFAYHETEDFN 88 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 LGDI+++ E +E +A+ FE +++ HG LH+LGYDH++++D +M Sbjct: 89 IGPYDTLGDIIISLERVEEQASEYNHSFEREFYYVLTHGILHILGYDHIEEEDKKIMRER 148 Query: 155 ERSILEDLGINDPYE 169 E +IL G Y+ Sbjct: 149 EEAILFSFGYTRDYK 163 >gi|116074016|ref|ZP_01471278.1| hypothetical protein RS9916_36237 [Synechococcus sp. RS9916] gi|116069321|gb|EAU75073.1| hypothetical protein RS9916_36237 [Synechococcus sp. RS9916] Length = 193 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 63/171 (36%), Gaps = 19/171 (11%) Query: 10 RLDLQIA-----------VENALWGDEIHLRTLCEVVFAKAVSNL------ISKGYFVKE 52 ++L +A + L + + + + K Sbjct: 1 MIELDLAFDPAPDAVVDATDGDLLRARLRNPEDWITDLSDWLQTMRQLAPPACPDSVGKA 60 Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML--GDIVLAYEI 110 ++ L L TD I LN +R +PT+VLSF + L GDI+++ Sbjct: 61 SMFSLGLQLTDDATIAELNGNWRQKPEPTDVLSFAALEKAPPFSGDPCLELGDIIVSVPT 120 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 +A G L L+ HGFLHLLG+DH D+ M + +L + Sbjct: 121 ARRQATEHGHALLWELRWLVSHGFLHLLGWDHPDEAQLAAMLRRQEQLLNN 171 >gi|238854660|ref|ZP_04644990.1| putative metalloprotease [Lactobacillus jensenii 269-3] gi|260664397|ref|ZP_05865249.1| metal-dependent hydrolase [Lactobacillus jensenii SJ-7A-US] gi|282932949|ref|ZP_06338346.1| putative metalloprotease [Lactobacillus jensenii 208-1] gi|313472199|ref|ZP_07812691.1| putative metalloprotease [Lactobacillus jensenii 1153] gi|238832450|gb|EEQ24757.1| putative metalloprotease [Lactobacillus jensenii 269-3] gi|239529579|gb|EEQ68580.1| putative metalloprotease [Lactobacillus jensenii 1153] gi|260561462|gb|EEX27434.1| metal-dependent hydrolase [Lactobacillus jensenii SJ-7A-US] gi|281302984|gb|EFA95189.1| putative metalloprotease [Lactobacillus jensenii 208-1] Length = 174 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE + + K + +L+ +K KEN +E+S+ F D + +N +YR Sbjct: 5 DITYNDETNFLADTSRDWRKWIMDLLLMAKKEIGKENNLEMSINFVDEDKSHQINRDYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D + +GD+ + +I+ A F+ Sbjct: 65 KDRPTDVISFAIEDGEEGVDLASFISDPDFTEDIGDLFMCISVIKRHAEEYETGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HGFLHL GYDH++ +A M G++ +LE+ G+ Sbjct: 125 YTLVHGFLHLNGYDHIEPAEAKEMFGIQGKVLEEYGLP 162 >gi|325681532|ref|ZP_08161057.1| translation metalloprotein YbeY [Ruminococcus albus 8] gi|324106799|gb|EGC01090.1| translation metalloprotein YbeY [Ruminococcus albus 8] Length = 170 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 9/159 (5%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +++ + N E+ + ++ + ++ F N E+S+ F + +I LN Sbjct: 3 KVKVLISNE--QTEVKIPVGIRMLVRRCCHAVLEYESFG--NDAEVSVSFVNDSQIHELN 58 Query: 72 FEYRGIDKPTNVLSFPTAFA----SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 E+R ID+ T+VLSFP + + +LGDIV++ E +A V G E + Sbjct: 59 KEHRNIDRSTDVLSFPLGEDGVYDINYETGASLLGDIVISLETATKQAQVYGHSLEREVG 118 Query: 128 HLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGIN 165 L +H LHLLGYDH + +M E +ILE LGI+ Sbjct: 119 FLTVHSMLHLLGYDHEESSLQERIMREKEEAILEQLGIS 157 >gi|237741714|ref|ZP_04572195.1| metal-binding protein [Fusobacterium sp. 4_1_13] gi|294785672|ref|ZP_06750960.1| metalloprotease [Fusobacterium sp. 3_1_27] gi|229429362|gb|EEO39574.1| metal-binding protein [Fusobacterium sp. 4_1_13] gi|294487386|gb|EFG34748.1| metalloprotease [Fusobacterium sp. 3_1_27] Length = 162 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 1/130 (0%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-ASSD 94 + ++ + + LSL+ TD+ I+ +N EYR D PT+V+SF + Sbjct: 29 LENYIKKVLELEEVESDRPLYLSLLLTDNENIQIINREYRDKDAPTDVISFAYHETEDFN 88 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 LGDI+++ E +E +A FE +++ HG LH+LGYDH++++D +M Sbjct: 89 IGPYDTLGDIIISLERVEEQAGEYNHSFEREFYYVLTHGILHILGYDHIEEEDKKIMRKR 148 Query: 155 ERSILEDLGI 164 E +IL G Sbjct: 149 EEAILSSFGY 158 >gi|329891158|ref|ZP_08269501.1| uncharacterized protein family UPF0054 family protein [Brevundimonas diminuta ATCC 11568] gi|328846459|gb|EGF96023.1| uncharacterized protein family UPF0054 family protein [Brevundimonas diminuta ATCC 11568] Length = 156 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 14/159 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 +++ +++ W + + A A I ++ ++ D ++ LN Sbjct: 2 IEVEIDSEGWTEALPEAAAVAERAAVAALGTI---------EGDVVVLLADDAAVQDLNK 52 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +R D+PTNVLSFP A ++ LGD+VL Y EA GK +HL HL++H Sbjct: 53 RFRDKDRPTNVLSFPAAESAFP-----HLGDVVLGYAYCAAEAETQGKTLSDHLSHLVVH 107 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 G LHLLG DH DD +A ME ER IL +LG+ DPY + Sbjct: 108 GVLHLLGRDHEDDAEAEEMEAEEREILAELGVADPYAAE 146 >gi|325129682|gb|EGC52496.1| hypothetical protein TIGR00043 [Neisseria meningitidis OX99.30304] Length = 171 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + GY ++SL+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKSGY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 88 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 148 IMEAEEIRLMRAAGFPNPYQED 169 >gi|210623872|ref|ZP_03294107.1| hypothetical protein CLOHIR_02058 [Clostridium hiranonis DSM 13275] gi|210153298|gb|EEA84304.1| hypothetical protein CLOHIR_02058 [Clostridium hiranonis DSM 13275] Length = 153 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 4/144 (2%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 D+I ++ V ++ Y + ++S+ F D+ I LN ++RG+D+ T+ Sbjct: 9 QDKIDIKDELYEKIEDIVEEVLD--YEGYSDDYDISISFVDNKEIHELNKQFRGVDRATD 66 Query: 83 VLSFPT--AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 VLSFP + LGDIV++ E ++ G FE + L+ H HLLGY Sbjct: 67 VLSFPMLSDEFEDVEYEEMSLGDIVVSLERALEQSIEYGHSFEREVCFLVCHSMFHLLGY 126 Query: 141 DHVDDKDACVMEGLERSILEDLGI 164 DH D++ M E ++L L I Sbjct: 127 DHDTDENTREMREKEEAVLTKLNI 150 >gi|328882369|emb|CCA55608.1| metal-dependent hydrolase [Streptomyces venezuelae ATCC 10712] Length = 165 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 17/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ + DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGIEVDEQAILDIARYALARMRIHPLS----------ELSVIVVDAEAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-----GCSSLMLGDIVLAYEIIEIEANV--LGKEFE 123 + ++ + PT+V+SFP +LGDIVL E+ + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEVATQQGKDAPTEHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L L +HG LHLLGYDH + ++ M GL+ +I Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPEEKAEMFGLQAAI 145 >gi|259046833|ref|ZP_05737234.1| metalloprotease [Granulicatella adiacens ATCC 49175] gi|259036456|gb|EEW37711.1| metalloprotease [Granulicatella adiacens ATCC 49175] Length = 169 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 20/173 (11%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 + K + + ++I E + + + + K VS + + E S+ F Sbjct: 1 MNKGDFKMI-IEIIDETEV------VPESHQELVHKVVS--FAADFLKIPQTKECSISFV 51 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFA-----------SSDGCSSLMLGDIVLAYEII 111 S RI +N ++R IDK T+V+SF D +GDIV++ + Sbjct: 52 SSERIREINRDFRNIDKVTDVISFALDDDDDDLASMQSIMEEDDSFVTSIGDIVISLDRA 111 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + +A G E L L +HGFLHL GYDH +++ M GL++ ILE G+ Sbjct: 112 KEQAEDYGHSLERELGFLALHGFLHLNGYDHQTEEEEAEMTGLQQEILEAYGL 164 >gi|161869467|ref|YP_001598633.1| hypothetical protein NMCC_0479 [Neisseria meningitidis 053442] gi|161595020|gb|ABX72680.1| conserved hypothetical protein [Neisseria meningitidis 053442] Length = 211 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 72 AERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 127 Query: 92 S--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 128 ETLPGQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAE 187 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 188 IMEAEEIRLMRAAGFPNPYQED 209 >gi|89074962|ref|ZP_01161407.1| hypothetical protein SKA34_20817 [Photobacterium sp. SKA34] gi|89049201|gb|EAR54765.1| hypothetical protein SKA34_20817 [Photobacterium sp. SKA34] Length = 154 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 76/135 (56%), Gaps = 2/135 (1%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 ++ + E+++ D TLN EYR D+PTNVLSFP + G Sbjct: 20 EAEFQQWLNAAVIPFQADAEVTIRLVDEKESHTLNLEYRDKDRPTNVLSFPFE--APPGV 77 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 +LGD+++ +++E EA K + H H+++HG LHLLGYDH++D++A ME LE Sbjct: 78 ELELLGDLIICRQVVEKEALEQNKPLKAHWAHMVVHGSLHLLGYDHIEDEEAEEMENLET 137 Query: 157 SILEDLGINDPYEVD 171 I++++G DPY + Sbjct: 138 EIMQNMGFVDPYISE 152 >gi|167749631|ref|ZP_02421758.1| hypothetical protein EUBSIR_00589 [Eubacterium siraeum DSM 15702] gi|167657384|gb|EDS01514.1| hypothetical protein EUBSIR_00589 [Eubacterium siraeum DSM 15702] Length = 169 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 10/170 (5%) Query: 1 MSVKKVNLPRL-DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSL 59 M K++ + + ++ N I + V K ++ + FV ++S+ Sbjct: 1 MRKVKMSEKKTPKIYMSFRNN--QKAIEVPNGLRTVIRKCIAETLRVTDFV--GDADVSV 56 Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPT----AFASSDGCSSLMLGDIVLAYEIIEIEA 115 D+ RI+ +N E+R +K T+V+SFP + + + MLGDIV++ E +A Sbjct: 57 TLVDNERIKRINKEFRDKNKVTDVISFPLGAYDEYDVNPENGAYMLGDIVISMEKAHAQA 116 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD-ACVMEGLERSILEDLGI 164 G + L H LHLLGYDH DD D VM L+ +L +L I Sbjct: 117 IEYGHSLVREVGFLATHSTLHLLGYDHEDDPDGEKVMLELQDLVLNNLKI 166 >gi|227364880|ref|ZP_03848926.1| metal-dependent hydrolase [Lactobacillus reuteri MM2-3] gi|325682495|ref|ZP_08162012.1| putative metalloprotease [Lactobacillus reuteri MM4-1A] gi|227070084|gb|EEI08461.1| metal-dependent hydrolase [Lactobacillus reuteri MM2-3] gi|324978334|gb|EGC15284.1| putative metalloprotease [Lactobacillus reuteri MM4-1A] Length = 160 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 17/165 (10%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +DL+I + L + + + + E+SL F ++ I+ Sbjct: 1 MMDLEIFDQTTA-----QLPNEQLEMVRDLLQYAAKELSLSEN--TEMSLTFVNNPEIKK 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCS----------SLMLGDIVLAYEIIEIEANVLG 119 LN +YR +D+ T+VLSF A + + LGD+ ++ + + +A LG Sbjct: 54 LNAQYRNVDRATDVLSFAAEEAGDETPIIMDPEMAAEIPVNLGDLFISIDKVAEQAKFLG 113 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + L L +HGFLHL GYDH + D M L+R IL+ G+ Sbjct: 114 HSVDRELGFLAVHGFLHLNGYDHEEPADEEKMFKLQREILDGYGL 158 >gi|251796244|ref|YP_003010975.1| hypothetical protein Pjdr2_2233 [Paenibacillus sp. JDR-2] gi|247543870|gb|ACT00889.1| protein of unknown function UPF0054 [Paenibacillus sp. JDR-2] Length = 165 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 74/159 (46%), Gaps = 14/159 (8%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 W +E + + + L G E++L FTD+ +I LN EYR ID+P Sbjct: 6 DWSNEQEKMEIPDQWVERLEQLLQIAGEMEGLTDGEVTLTFTDNEQIHQLNREYRNIDRP 65 Query: 81 TNVLSFPTAFA--------------SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 T+VLSF S MLGDIV++ E + ++ G E + Sbjct: 66 TDVLSFAMQDEGTEELDIIFEVESEDEIDPISGMLGDIVISVEKAQEQSEDYGHSLEREI 125 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L +HGFLHLLGYDH+DD M + ++L+ G++ Sbjct: 126 GFLFVHGFLHLLGYDHMDDAGEAEMTAKQEAVLQKAGLS 164 >gi|295398010|ref|ZP_06808066.1| metal-dependent hydrolase [Aerococcus viridans ATCC 11563] gi|294973768|gb|EFG49539.1| metal-dependent hydrolase [Aerococcus viridans ATCC 11563] Length = 158 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 14/161 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L + E+ + + + GY ++LSL + I +N Sbjct: 2 LDLIFEDKTNELSNKDEEMLHELLD------FAAGYLKLTGEIDLSLTIVNDAEIHEINK 55 Query: 73 EYRGIDKPTNVLSFPTAFASSDG--------CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 YR ID+PT+V+SF D LGD+ ++ + +A G FE Sbjct: 56 TYRNIDRPTDVISFAIEDLGEDELAVMGLPEDMPRELGDLFISIDKAREQAADYGHSFER 115 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L +HGFLHL GYDH+++ D M GL++ IL+ G+ Sbjct: 116 ELGFLAVHGFLHLNGYDHMNEVDEKEMFGLQKEILDAYGLK 156 >gi|167758251|ref|ZP_02430378.1| hypothetical protein CLOSCI_00589 [Clostridium scindens ATCC 35704] gi|167664148|gb|EDS08278.1| hypothetical protein CLOSCI_00589 [Clostridium scindens ATCC 35704] Length = 164 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 17/155 (10%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E L CE + + + + Y E+SL+ T + I +N ++RGID+PT+VL Sbjct: 10 EARLPIECEKIARQVIETTLD--YAGCPYEWEVSLLLTQNEEIRKMNRDFRGIDRPTDVL 67 Query: 85 SFPTAFAS---------------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 SFP LMLGDIV++ E + +A G L Sbjct: 68 SFPMTDYPVPGQFGFLEESDDCFHPESGELMLGDIVISKEKVLSQAEEFGHSALREYAFL 127 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 I H LHL+GYDH+ D++ +ME ++ I+E L I Sbjct: 128 IAHSVLHLIGYDHMQDEERQIMERKQKEIMERLNI 162 >gi|254671890|emb|CBA04156.1| conserved hypothetical protein [Neisseria meningitidis alpha275] gi|308388724|gb|ADO31044.1| hypothetical protein NMBB_0581 [Neisseria meningitidis alpha710] Length = 251 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 112 AERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 167 Query: 92 SSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 168 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAE 227 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 228 IMEAEEIRLMRAAGFPNPYQED 249 >gi|314936309|ref|ZP_07843656.1| putative metalloprotease [Staphylococcus hominis subsp. hominis C80] gi|313654928|gb|EFS18673.1| putative metalloprotease [Staphylococcus hominis subsp. hominis C80] Length = 153 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 3/124 (2%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLM 100 +K ELS+ F D I+ +N YR DK T+V+SF D + Sbjct: 27 FAKEKENIHEDAELSVTFVDKDEIQEINKNYRDKDKVTDVISFALEEDEPDIIGLDIPRV 86 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LGDI++ ++ + +A FE L L +HGFLHLLGYDH++++D M G ++ IL Sbjct: 87 LGDIIICTDVAKEQAESYNHSFERELGFLALHGFLHLLGYDHMNEEDEKEMFGRQKEILN 146 Query: 161 DLGI 164 G+ Sbjct: 147 AYGL 150 >gi|225075411|ref|ZP_03718610.1| hypothetical protein NEIFLAOT_00416 [Neisseria flavescens NRL30031/H210] gi|224953229|gb|EEG34438.1| hypothetical protein NEIFLAOT_00416 [Neisseria flavescens NRL30031/H210] Length = 171 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 6/141 (4%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E F + V + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 33 ERDFYRWVWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGE 88 Query: 93 --SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 D S + GD+V+ +++ EA GK E H HL IHG LHL+GYDH++D +A + Sbjct: 89 ILPDQFSDGLYGDLVICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAEI 148 Query: 151 MEGLERSILEDLGINDPYEVD 171 ME E ++ G +PY+ D Sbjct: 149 MEAEEIRLMLAAGFPNPYQED 169 >gi|260890435|ref|ZP_05901698.1| putative metalloprotease [Leptotrichia hofstadii F0254] gi|260860055|gb|EEX74555.1| putative metalloprotease [Leptotrichia hofstadii F0254] Length = 157 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 8/161 (4%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYF--VKENIVELSLVFTD 63 + L + I + + + E VS ++ Y +N LSL+ T Sbjct: 1 MEKIMLSIDITYDIEQIDNFFDEEKIKEF-----VSYILKDEYKEEFDKNEYYLSLLITT 55 Query: 64 SHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + +I+ +N EYR D PT+V+SF + G + MLGDIV++ E ++ +++ G E Sbjct: 56 NAQIQEINHEYRQKDTPTDVISFAYNETENFGAMN-MLGDIVISIERVKEQSSEYGHSDE 114 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +++ HG LHLLGYDH+++KD VM E IL Sbjct: 115 REFYYVLCHGMLHLLGYDHIEEKDKVVMRRREEEILSKFNY 155 >gi|20807452|ref|NP_622623.1| putative metalloprotease [Thermoanaerobacter tengcongensis MB4] gi|26006913|sp|Q8RB52|RRMF_THETN RecName: Full=Probable rRNA maturation factor gi|20515977|gb|AAM24227.1| predicted metal-dependent hydrolase [Thermoanaerobacter tengcongensis MB4] Length = 158 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 16/162 (9%) Query: 13 LQIAVENALWG-DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 + + ++N D L L + F D+ I LN Sbjct: 1 MNVLIDNRQTKVDASGLEALVVRAIKATLEEEEVVDEVEVSVS------FVDNEEIRKLN 54 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSS---------LMLGDIVLAYEIIEIEANVLGKEF 122 YRGID T+VLSFP +GDIV++ E + +A G F Sbjct: 55 KYYRGIDSSTDVLSFPLMEFEEIEEGEEDEKDAEEIYPIGDIVISLEKAKEQAEEYGHSF 114 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 E + +L +H LHLLGYDH +++ +M E ++E LG+ Sbjct: 115 EREVAYLTVHSMLHLLGYDHETEEERKLMREKEEKVMERLGL 156 >gi|16800570|ref|NP_470838.1| putative metalloprotease [Listeria innocua Clip11262] gi|26006924|sp|Q92BP5|RRMF_LISIN RecName: Full=Probable rRNA maturation factor gi|16413975|emb|CAC96733.1| lin1502 [Listeria innocua Clip11262] gi|313618896|gb|EFR90761.1| putative metalloprotease [Listeria innocua FSL S4-378] gi|313623746|gb|EFR93888.1| putative metalloprotease [Listeria innocua FSL J1-023] Length = 161 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 18/168 (10%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + L++ + E DE L E + + GY E ELSL FT + I Sbjct: 1 MTVLEIDLLDETNNLPDEDK--QLVENILQ------FAAGYLKIEEGTELSLTFTTNEGI 52 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCS----------SLMLGDIVLAYEIIEIEANV 117 + +N EYR D+ T+V+SF MLGDI+++ E E +A Sbjct: 53 QEINREYRNKDQATDVISFALEEMGDGETEIDWGDFDLETPRMLGDIIISTEKAEEQAKD 112 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G L L +HG LHLLGYDH++ + VM GL++ +L+ G+ Sbjct: 113 YGHTKARELGFLAVHGLLHLLGYDHMEPDEEKVMFGLQKEVLDAYGLE 160 >gi|312110181|ref|YP_003988497.1| hypothetical protein GY4MC1_1074 [Geobacillus sp. Y4.1MC1] gi|311215282|gb|ADP73886.1| protein of unknown function UPF0054 [Geobacillus sp. Y4.1MC1] Length = 156 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 14/160 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L++ E E + E + + + E+ + F D+ RI + Sbjct: 3 LNIDFIDETNEVTKEQ--MEMIERLLN------YAAETEHVPDGAEVGVSFVDNERIRII 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFEN 124 N +YRG D+PT+V+SF L+LGDI+++ + +A G F Sbjct: 55 NRDYRGKDQPTDVISFALEEKGEGEIEIVGADAPLLLGDIIISIPKAKEQAEEYGHSFMR 114 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L +HGFLHLLGYDH +++ +M ++ ILE G+ Sbjct: 115 ELGFLAVHGFLHLLGYDHKTEEEEKIMFSKQKDILERYGL 154 >gi|227498625|ref|ZP_03928769.1| cytidine deaminase [Acidaminococcus sp. D21] gi|226904081|gb|EEH89999.1| cytidine deaminase [Acidaminococcus sp. D21] Length = 160 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 9/156 (5%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 + +EN +++ + E KA++ + E+ + D I LN Y Sbjct: 3 VTLENN--QEKVSIPEALEADLTKAMNVVAELEALSP--QTEVDITLVDDAAIHELNRTY 58 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLM-----LGDIVLAYEIIEIEANVLGKEFENHLVHL 129 RGID+PT+VLSF + LGD++++ + G E + +L Sbjct: 59 RGIDRPTDVLSFALDEGEEEPEVDDDEIEHLLGDVIISAPTAVRQGEEYGHGLEREMTYL 118 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +HG LHLLGYDH+++KD +M E +L L + Sbjct: 119 AVHGMLHLLGYDHMEEKDKLIMRKREEEVLRRLDLA 154 >gi|269123310|ref|YP_003305887.1| hypothetical protein Smon_0530 [Streptobacillus moniliformis DSM 12112] gi|268314636|gb|ACZ01010.1| protein of unknown function UPF0054 [Streptobacillus moniliformis DSM 12112] Length = 154 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 79/155 (50%), Gaps = 5/155 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L+L I+ ++ + I+ + E F++ V + Y + + +SL+ TD+ I+ Sbjct: 1 MLNLDISFKDIDNKEYINEDKILE--FSEFVIKNEREDYL--DKELYISLLLTDNKNIQE 56 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N EYR D PT+V+SF + + ++GDIV++ + +E ++ ++ Sbjct: 57 INREYREKDSPTDVISFAYNE-TENFGGVEVVGDIVISLDRVEEQSKEYNHSVIREFYYV 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++HG LH+LGYDH+++ D +M E L Sbjct: 116 LVHGLLHILGYDHIEEDDKKIMREKEEYYLSKFNY 150 >gi|91785152|ref|YP_560358.1| hypothetical protein Bxe_A0628 [Burkholderia xenovorans LB400] gi|123168087|sp|Q13UD3|RRMF_BURXL RecName: Full=Probable rRNA maturation factor gi|91689106|gb|ABE32306.1| Protein of unknown function UPF0054 [Burkholderia xenovorans LB400] Length = 153 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 57/162 (35%), Positives = 78/162 (48%), Gaps = 14/162 (8%) Query: 9 PRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 P+L L + W + L AV+ I F EL++ F D+ Sbjct: 5 PKLTLNLQFPAAKAWPEHKALLP------RAAVAGWIKAALFAD---GELTVRFVDAEEG 55 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 TLN YRG D TNVL+F A + D + GD++L ++E EA GK H Sbjct: 56 RTLNRTYRGKDYSTNVLTFAYAESEDD----PVTGDLILCCPVVEKEAAEQGKPLVAHYA 111 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH +++A ME +E IL LG DPY+ Sbjct: 112 HLLVHGTLHAQGYDHEVEEEAEEMEAIETEILGKLGFPDPYQ 153 >gi|317125261|ref|YP_004099373.1| hypothetical protein Intca_2136 [Intrasporangium calvum DSM 43043] gi|315589349|gb|ADU48646.1| protein of unknown function UPF0054 [Intrasporangium calvum DSM 43043] Length = 155 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E DE+ L + + +L + D + L Sbjct: 1 MSIDVLNETDERVDELELLACARYCMEQMRVH----------PQADLCIKLVDEPAMSVL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD----GCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ + PT+V+SFP LGDIVL + +A G + Sbjct: 51 HEQWMDLPGPTDVMSFPMDELRPGREGQEPEEGTLGDIVLCPSVATRQAAEAGHAPMEEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L HG LHLLGYDH + + M L+R +L Sbjct: 111 LLLTTHGILHLLGYDHAEPDEEREMFELQRQLL 143 >gi|320353408|ref|YP_004194747.1| pyridoxine 5'-phosphate synthase [Desulfobulbus propionicus DSM 2032] gi|320121910|gb|ADW17456.1| pyridoxine 5'-phosphate synthase [Desulfobulbus propionicus DSM 2032] Length = 392 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG-CSSLMLGDIV 105 +K ++S+VF + N +YR + PTNVLSFP A LGDI+ Sbjct: 29 ARLLKLEGADVSVVFLGDAEMAAYNEQYRRKNGPTNVLSFPAAEGGEGFVAPENELGDIL 88 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDL 162 ++ + EA G + L LIIHG LHL+GYDH +++A M E+ + + L Sbjct: 89 ISVDTARREAGQQGHSLHHRLTQLIIHGMLHLIGYDHERSEEEAVRMWDYEQELFQQL 146 >gi|239637618|ref|ZP_04678590.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|239596836|gb|EEQ79361.1| conserved hypothetical protein [Staphylococcus warneri L37603] Length = 155 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 13/160 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + L DE E + +K ELS+ F D I+ Sbjct: 1 MFTIDFSDHTELVKDE--WYEQIEKLLN------FAKQQEEISEDAELSITFVDKSEIQE 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFEN 124 +N YR DK T+V+SF D +LGDI++ ++ + ++ G FE Sbjct: 53 INKMYRDKDKVTDVISFALEEDEPDIDMSEFDIPRVLGDIIICTDVAQEQSESYGHSFER 112 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L +HGFLHLLGYDH++++D M G + +IL G+ Sbjct: 113 ELGFLALHGFLHLLGYDHMNEEDEKEMFGRQDAILNAYGL 152 >gi|295399217|ref|ZP_06809199.1| protein of unknown function UPF0054 [Geobacillus thermoglucosidasius C56-YS93] gi|294978683|gb|EFG54279.1| protein of unknown function UPF0054 [Geobacillus thermoglucosidasius C56-YS93] Length = 156 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 14/160 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L++ E E + E + + + E+ + F D+ RI + Sbjct: 3 LNIDFIDETNEVTKEQ--MEMIERLLN------YAAETEHVPDGAEVGVSFVDNERIRII 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFEN 124 N +YRG D+PT+V+SF L+LGDI+++ + +A G F Sbjct: 55 NRDYRGKDQPTDVISFALEEKGEGEIEIVGADAPLLLGDIIISIPKAKEQAEEYGHSFMR 114 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L +HGFLHLLGYDH +++ +M ++ ILE G+ Sbjct: 115 ELGFLAVHGFLHLLGYDHKTEEEEKIMFSKQKDILEQYGL 154 >gi|199599322|ref|ZP_03212720.1| Predicted metal-dependent hydrolase [Lactobacillus rhamnosus HN001] gi|258508548|ref|YP_003171299.1| metalloprotease [Lactobacillus rhamnosus GG] gi|199589761|gb|EDY97869.1| Predicted metal-dependent hydrolase [Lactobacillus rhamnosus HN001] gi|257148475|emb|CAR87448.1| Metalloprotease [Lactobacillus rhamnosus GG] gi|259649855|dbj|BAI42017.1| conserved hypothetical protein [Lactobacillus rhamnosus GG] Length = 152 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 4/126 (3%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----GCSS 98 N E+S+ I+ +N EYR D+ T+V+SF D + Sbjct: 25 AFCGQQLALPNDTEMSITIVGDDAIQKINREYRDTDRATDVISFAIEDGEDDLPLLPGMA 84 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +GD+ + + A G FE L + ++HGFLHL GYDH+ +D VM L++ I Sbjct: 85 KNIGDLFIDPLTVRRHAKEYGHSFERELGYTVVHGFLHLNGYDHIKPEDEAVMIPLQKKI 144 Query: 159 LEDLGI 164 L G+ Sbjct: 145 LTAYGL 150 >gi|154509439|ref|ZP_02045081.1| hypothetical protein ACTODO_01970 [Actinomyces odontolyticus ATCC 17982] gi|293189526|ref|ZP_06608246.1| putative metalloprotease [Actinomyces odontolyticus F0309] gi|153799073|gb|EDN81493.1| hypothetical protein ACTODO_01970 [Actinomyces odontolyticus ATCC 17982] gi|292821616|gb|EFF80555.1| putative metalloprotease [Actinomyces odontolyticus F0309] Length = 149 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 14/150 (9%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 ++ E +E L + V + + E++++F + +E L+ Sbjct: 3 EVINETDYEINEAEFSALADYVLDQM----------HVSSDAEVNIIFIEPEPMEDLHVR 52 Query: 74 YRGIDKPTNVLSFPTAFASSD----GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 + + PT+V+SFP MLGDI + ++ +A G ++ L Sbjct: 53 WLDLPGPTDVMSFPMDELRPGTADHPTPPGMLGDICICPQVAARQAAESGHSAAEEMLLL 112 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 HG LHLLGYDH D + VM L+R +L Sbjct: 113 ATHGMLHLLGYDHATDAEREVMFALQRKLL 142 >gi|126700056|ref|YP_001088953.1| hypothetical protein CD2440 [Clostridium difficile 630] gi|254976033|ref|ZP_05272505.1| hypothetical protein CdifQC_11999 [Clostridium difficile QCD-66c26] gi|255093421|ref|ZP_05322899.1| hypothetical protein CdifC_12284 [Clostridium difficile CIP 107932] gi|255101599|ref|ZP_05330576.1| hypothetical protein CdifQCD-6_12369 [Clostridium difficile QCD-63q42] gi|255307468|ref|ZP_05351639.1| hypothetical protein CdifA_12817 [Clostridium difficile ATCC 43255] gi|255315166|ref|ZP_05356749.1| hypothetical protein CdifQCD-7_12477 [Clostridium difficile QCD-76w55] gi|255517835|ref|ZP_05385511.1| hypothetical protein CdifQCD-_12036 [Clostridium difficile QCD-97b34] gi|255650951|ref|ZP_05397853.1| hypothetical protein CdifQCD_12241 [Clostridium difficile QCD-37x79] gi|260684020|ref|YP_003215305.1| hypothetical protein CD196_2285 [Clostridium difficile CD196] gi|260687680|ref|YP_003218814.1| hypothetical protein CDR20291_2332 [Clostridium difficile R20291] gi|306520831|ref|ZP_07407178.1| hypothetical protein CdifQ_14166 [Clostridium difficile QCD-32g58] gi|123362995|sp|Q182C6|RRMF_CLOD6 RecName: Full=Probable rRNA maturation factor gi|115251493|emb|CAJ69326.1| putative metal-dependent hydrolase [Clostridium difficile] gi|260210183|emb|CBA64380.1| conserved hypothetical protein [Clostridium difficile CD196] gi|260213697|emb|CBE05571.1| conserved hypothetical protein [Clostridium difficile R20291] Length = 153 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP--TAFASSDGCSSLMLGDIV 105 Y ++ E+SL F D+ I LN EYRG+D+ T+VLSFP + LGDIV Sbjct: 32 YEGYDDNYEVSLSFVDNKEIHELNREYRGVDRVTDVLSFPLLSDDFEDVELEEESLGDIV 91 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ E ++ FE + LI H HLLGYDH D++ M E IL L I Sbjct: 92 VSLERALEQSIEYNHSFEREVCFLICHSMFHLLGYDHDTDENTKEMREKEEHILNKLNI 150 >gi|240122830|ref|ZP_04735786.1| hypothetical protein NgonP_02615 [Neisseria gonorrhoeae PID332] gi|268681445|ref|ZP_06148307.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268621729|gb|EEZ54129.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] Length = 171 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + GY ++ L+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKSGYL----RADIGLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C + GD+++ +++ EA GK E H HL IHG LHL+GYDH+ D +A Sbjct: 88 EILPCQVSERLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGTLHLMGYDHIKDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY D Sbjct: 148 IMEAEEIRLMRAAGYPNPYRED 169 >gi|19704081|ref|NP_603643.1| metal-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|26006903|sp|Q8R5X4|RRMF_FUSNN RecName: Full=Probable rRNA maturation factor gi|19714281|gb|AAL94942.1| Hypothetical Metal-Binding Protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 162 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 1/130 (0%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-ASSD 94 + +++ + + LSL+ TD+ I+ +N EYR D PT+V+SF + Sbjct: 29 LENYIKKVLNLEKIESDRPLYLSLLLTDNENIQVINREYRDKDAPTDVISFAYHETEDFN 88 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 S LGDI+++ E +E +A+ FE +++ HG LH+LGYDH++++D +M Sbjct: 89 IGSYDTLGDIIISLERVEEQASEYNHSFEREFYYVLTHGILHILGYDHIEEEDKKLMRER 148 Query: 155 ERSILEDLGI 164 E +IL G Sbjct: 149 EEAILSSFGY 158 >gi|118594512|ref|ZP_01551859.1| hypothetical protein MB2181_02550 [Methylophilales bacterium HTCC2181] gi|118440290|gb|EAV46917.1| hypothetical protein MB2181_02550 [Methylophilales bacterium HTCC2181] Length = 153 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 19/164 (11%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 +N P + I +++ + + + C + K+ + L++ Sbjct: 1 MNSPMVH-DITIQDTVHQRKYLSKKNCYQWLS-----------VFKDCNLTLTIRLVGES 48 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 + LN YR ++K TNVLSF ++GD+VL + I++ EA + K+ +H Sbjct: 49 ESKNLNNSYRNLNKATNVLSFQIEDKP-------IIGDLVLCHAIVKKEARIQRKKIHDH 101 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL+IHG LHL+G DH ++ DA ME E +LE LGI +PY Sbjct: 102 YAHLLIHGCLHLMGLDHENEDDADAMEKKEILLLEKLGIKNPYN 145 >gi|227495126|ref|ZP_03925442.1| metalloprotease [Actinomyces coleocanis DSM 15436] gi|226831578|gb|EEH63961.1| metalloprotease [Actinomyces coleocanis DSM 15436] Length = 169 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E D R + E V A+ EL+L+F + +E L Sbjct: 1 MTIEVANETEYQVDIDEFRAVVEFVLAQM----------HVSTEAELALMFIEPEPMEEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGC----SSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ + PT+V+SFP LGDIV+ + +A G + Sbjct: 51 HIKWMDLPGPTDVMSFPMDELRPGTPGRVTPPGTLGDIVICPTVAAAQALKAGHSAAEEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L +HG LHLLGYDHV+ ++ VM L+R +L Sbjct: 111 LLLTVHGVLHLLGYDHVEPEEEKVMFELQRKLL 143 >gi|217964389|ref|YP_002350067.1| hypothetical protein LMHCC_1105 [Listeria monocytogenes HCC23] gi|290894226|ref|ZP_06557195.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|254799939|sp|B8DE46|RRMF_LISMH RecName: Full=Probable rRNA maturation factor gi|217333659|gb|ACK39453.1| conserved hypothetical protein [Listeria monocytogenes HCC23] gi|290556223|gb|EFD89768.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|307571046|emb|CAR84225.1| metal-dependent hydrolase family protein [Listeria monocytogenes L99] Length = 161 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 75/168 (44%), Gaps = 18/168 (10%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + L++ + E DE L E + + Y E ELSL FT + I Sbjct: 1 MTVLEIDLLDETKKLPDEDK--QLVENILQ------FAAEYLKIEQGTELSLTFTTNEGI 52 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCS----------SLMLGDIVLAYEIIEIEANV 117 +N EYR D+ T+V+SF MLGDI+++ E E +A Sbjct: 53 REINREYRDKDQATDVISFALEEMGDGETEIDWGEFDLETPRMLGDIIISTEKAEEQAKD 112 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G L L +HG LHLLGYDH++ + VM GL++ +L+ G+ Sbjct: 113 YGHTKARELGFLAVHGLLHLLGYDHMEPDEEKVMFGLQKEVLDAYGLE 160 >gi|212716038|ref|ZP_03324166.1| hypothetical protein BIFCAT_00950 [Bifidobacterium catenulatum DSM 16992] gi|212661405|gb|EEB21980.1| hypothetical protein BIFCAT_00950 [Bifidobacterium catenulatum DSM 16992] Length = 181 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP ++M LGDIV+ + Sbjct: 36 DLTIMFVDPDPIAQLHMRWMNLEGPTDVMSFPMDELRPGDGRTVMEGVLGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH + M GL+R +L Sbjct: 96 QQALAAGHSTMEEMMLLTIHGILHLLGYDHATPEQERQMFGLQRQLL 142 >gi|291530789|emb|CBK96374.1| conserved hypothetical protein TIGR00043 [Eubacterium siraeum 70/3] gi|291557706|emb|CBL34823.1| conserved hypothetical protein TIGR00043 [Eubacterium siraeum V10Sc8a] Length = 169 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 10/170 (5%) Query: 1 MSVKKVNLPRL-DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSL 59 M K++ + + ++ N I + V K ++ + FV ++S+ Sbjct: 1 MRKVKMSEKKTPKIYMSFRNN--QKAIEVPNGLRTVIRKCIAETLRVTDFV--GDADVSV 56 Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPT----AFASSDGCSSLMLGDIVLAYEIIEIEA 115 D+ RI+ +N E+R +K T+V+SFP + + + MLGDIV++ E +A Sbjct: 57 TLVDNERIKRINKEFRDKNKVTDVISFPLGAYDEYDVNPENGAYMLGDIVISMEKAHAQA 116 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD-ACVMEGLERSILEDLGI 164 G + L H LHLLGYDH DD D VM L+ +L +L I Sbjct: 117 IEYGHSLIREVGFLATHSTLHLLGYDHEDDPDGEKVMLELQDLVLNNLKI 166 >gi|294789474|ref|ZP_06754710.1| putative metalloprotease [Simonsiella muelleri ATCC 29453] gi|294482554|gb|EFG30245.1| putative metalloprotease [Simonsiella muelleri ATCC 29453] Length = 174 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 5/171 (2%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M + + P L +Q + I+ + ++ K I E+SLV Sbjct: 7 MKKQTKHFPFLRIQ---QQRFALSYINESSATDLPTEKQFYQWIWHALKNFYYRAEISLV 63 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM--LGDIVLAYEIIEIEANVL 118 D N +YRG D TNVLSF GD+++ ++ EA Sbjct: 64 LLDEAAARQYNHDYRGKDYATNVLSFAHNEGEFLFVEQDDVLRGDLIICPRVVAKEATEQ 123 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 GK +H HL+IHG LHL+G+DH++D +A ME LE +L L I +PYE Sbjct: 124 GKALHDHYAHLVIHGTLHLIGFDHMEDDEAEEMENLETELLAQLNIVNPYE 174 >gi|309388931|gb|ADO76811.1| protein of unknown function UPF0054 [Halanaerobium praevalens DSM 2228] Length = 143 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 13/153 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + + N+ EI + + +++ + E+S+ F +I+ LN Sbjct: 2 INVDFNNSQTAVEID-----QEILKLLEKVVVTAAEIEGYSGGEVSIAFVTKAKIKELNN 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +YR D T+VLSFP +LGDI+++ +I +A + L +L +H Sbjct: 57 DYRDKDSVTDVLSFPMDAE--------VLGDIIISAQIASEQAQEYKHSLKRELAYLTVH 108 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G LHL GYDH ++ M E +L LGI+ Sbjct: 109 GMLHLFGYDHHGQEEKNEMRQKEERVLTQLGIS 141 >gi|320529428|ref|ZP_08030516.1| conserved hypothetical protein TIGR00043 [Selenomonas artemidis F0399] gi|320138394|gb|EFW30288.1| conserved hypothetical protein TIGR00043 [Selenomonas artemidis F0399] Length = 154 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 11/159 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++++I+ + +E+ + E +AV + G E+S+ T+ I Sbjct: 1 MMEIRISAQ----PEELCIAPGDEAAVRRAVETV---GRLYGAEGAEVSVTLTNDAYIHE 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +N +YRG+D+PT+V+SF + D + +LGD+V++ E +A G + Sbjct: 54 INRQYRGVDRPTDVISFALMESEEPEILDDPAGDVLGDLVISLERTRAQAEEYGHSYLRE 113 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L +HG LHLLGYDH+++ + ME +R ++E LGI Sbjct: 114 LSFLTVHGMLHLLGYDHMEEAERAEMEEEQRHVMEALGI 152 >gi|328957478|ref|YP_004374864.1| putative metalloprotease [Carnobacterium sp. 17-4] gi|328673802|gb|AEB29848.1| putative metalloprotease [Carnobacterium sp. 17-4] Length = 158 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 11/152 (7%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 DE + + +++ + + E+S+ F D+ I+ +N YRG D+PT+V Sbjct: 7 DETNKIATEQKELIQSLLE-FAGNHLELPKDTEMSVTFVDNENIQKINKTYRGKDQPTDV 65 Query: 84 LSFPTAFASSDG----------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 +SF + D +GDI+++ + +A+ G F+ L L +HG Sbjct: 66 ISFAIEDEAEDELMINFDTLEEPMPRNIGDIIISVDKTASQADEYGHSFDRELGFLALHG 125 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 FLHL GYDH+ +D M GL++ ILE G+ Sbjct: 126 FLHLNGYDHMTPEDEKEMFGLQKEILEAYGLK 157 >gi|319639195|ref|ZP_07993946.1| metalloprotease [Neisseria mucosa C102] gi|317399379|gb|EFV80049.1| metalloprotease [Neisseria mucosa C102] Length = 171 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 59/178 (33%), Positives = 85/178 (47%), Gaps = 16/178 (8%) Query: 1 MSVKKVNLPRLDLQ-----IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIV 55 M K P L LQ + ENA + L + E F + + + Y Sbjct: 1 MKRAK-KYPFLSLQRQRFHLNFENA--SSAVDLPS--ERNFYRWAWSALKNEY----RRA 51 Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEI 113 ++SL+ D N +YRG D TNVLSF D S + GD+V+ +++ Sbjct: 52 DISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPDQFSDGLYGDLVICPQVVLK 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA+ GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY+ D Sbjct: 112 EASEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAEIMEAEEIRLMLAAGFPNPYQED 169 >gi|228906475|ref|YP_932284.2| unkown domain/metalloprotease fusion protein [Azoarcus sp. BH72] Length = 271 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 14/165 (8%) Query: 7 NLPRLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 LP L L++ + + A+ E+++ Sbjct: 117 KLPVLTLEVQKALDGGDKAAAPKKHQIRRWAQAAL-----------RTDAEVTVRLVGET 165 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFA--SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 LN YRG D TNVL+F + ++GD+VL ++ EA GK + Sbjct: 166 EGRALNLGYRGKDYATNVLTFVYGEEGGAPAVEGMPLMGDLVLCVPVVVREAAEQGKALD 225 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H HL++HG LHL G DH DD +A ME E +IL LG +PY Sbjct: 226 AHFAHLVVHGMLHLQGLDHEDDAEAEAMETAETNILRGLGYANPY 270 >gi|257454806|ref|ZP_05620057.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60] gi|257447739|gb|EEV22731.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60] Length = 208 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 3/126 (2%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDI 104 G F+ + VEL + T+ +N + RG D TN+LS+ + + +L LG++ Sbjct: 83 GEFIFQKTVELEIYVTEPVEARAINLDARGKDYATNILSYASELPEAVLELLPALPLGEL 142 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLG 163 V+ + ++ +A GK E HL HL++HG LHLLG+DH + ME +E ++L+ L Sbjct: 143 VICHAVVVSQAAEQGKTVEQHLTHLLVHGMLHLLGFDHELGQAEQDEMEAIEIAVLDKLS 202 Query: 164 INDPYE 169 + +PYE Sbjct: 203 VANPYE 208 >gi|323342100|ref|ZP_08082333.1| metal-dependent hydrolase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464525|gb|EFY09718.1| metal-dependent hydrolase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 147 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 10/156 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ ++ E + + ++K F +N VE+++V D I Sbjct: 1 MEINYINQSND-----DSWDAFETYLSPILEETLNKTGF--KNPVEVNVVLVDDPSIHNF 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+R ID+PT+VLSF S M+GDI+++ + I +A G + L+ Sbjct: 54 NKEFRDIDRPTDVLSF---EDGSMEGEVFMMGDIIISVDAIRRQAEEYGHSIKREFCFLV 110 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 HG+LHLLGYDH ++ VM GL++ IL D+ D Sbjct: 111 AHGYLHLLGYDHHTPEEEVVMFGLQKEILHDIARKD 146 >gi|329770521|ref|ZP_08261899.1| metalloprotease [Gemella sanguinis M325] gi|328836270|gb|EGF85939.1| metalloprotease [Gemella sanguinis M325] Length = 157 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 14/159 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I ++ L D L + +K + +I E+SL F + I+ +N Sbjct: 4 VDIIDDDNLVQDSTKNMLLE-------LLESAAKHENINTDITEMSLSFVNKEEIQEINR 56 Query: 73 EYRGIDKPTNVLSFPTAFASS-------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +YRG D PT+V+SF +GD+++ +I + +A F+ Sbjct: 57 DYRGKDVPTDVISFALNDEVESEISIIGLEDEINSIGDVIICVDIAKEQAEDYNHSFDRE 116 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + L +HGFLHLLGYDH+ +D M + ILE+ G+ Sbjct: 117 IGFLAVHGFLHLLGYDHMTPEDEKEMFEKQDKILEEFGL 155 >gi|145558838|sp|A1K3J2|RRMF_AZOSB RecName: Full=Probable rRNA maturation factor gi|119669484|emb|CAL93397.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 252 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 14/165 (8%) Query: 7 NLPRLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 LP L L++ + + A+ E+++ Sbjct: 98 KLPVLTLEVQKALDGGDKAAAPKKHQIRRWAQAAL-----------RTDAEVTVRLVGET 146 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFA--SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 LN YRG D TNVL+F + ++GD+VL ++ EA GK + Sbjct: 147 EGRALNLGYRGKDYATNVLTFVYGEEGGAPAVEGMPLMGDLVLCVPVVVREAAEQGKALD 206 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H HL++HG LHL G DH DD +A ME E +IL LG +PY Sbjct: 207 AHFAHLVVHGMLHLQGLDHEDDAEAEAMETAETNILRGLGYANPY 251 >gi|227485439|ref|ZP_03915755.1| metal-dependent hydrolase [Anaerococcus lactolyticus ATCC 51172] gi|227236569|gb|EEI86584.1| metal-dependent hydrolase [Anaerococcus lactolyticus ATCC 51172] Length = 152 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 48/137 (35%), Positives = 75/137 (54%), Gaps = 4/137 (2%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 L K + ++ F + E+SL D I LN EYR +D+PT+VLSFP Sbjct: 16 DLIRERAEKTIEEVLRVENFTEN--AEVSLSIVDMETIHRLNKEYREVDRPTDVLSFPMD 73 Query: 90 FA--SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 ++G S +LGDIV+ ++ E +A G E +++LI H LHLLGYDH+++ D Sbjct: 74 EEGYDNEGNSIFLLGDIVICLDVAENQAKDFGHSLEREMMYLICHSTLHLLGYDHIEEDD 133 Query: 148 ACVMEGLERSILEDLGI 164 M E+ ++++LG+ Sbjct: 134 KLEMRSREKEVMKNLGV 150 >gi|158313947|ref|YP_001506455.1| putative metalloprotease [Frankia sp. EAN1pec] gi|238686840|sp|A8KYW3|RRMF_FRASN RecName: Full=Probable rRNA maturation factor gi|158109352|gb|ABW11549.1| protein of unknown function UPF0054 [Frankia sp. EAN1pec] Length = 159 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 7/117 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDI 104 + ELS++ + + L+ Y + PT+VL+FP S + + +LGD+ Sbjct: 33 NPLAELSVMLVEIDAMTDLHVRYMAEEGPTDVLAFPQDEAFEPSWSESPEEDPTTLLGDV 92 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 VL E+ +A G E L L HG LHLLGYDH + ++ M L+ S+L Sbjct: 93 VLCPEVARRQAAQAGHGMERELHILCTHGILHLLGYDHAEPEEEREMWKLQNSLLAS 149 >gi|255656420|ref|ZP_05401829.1| hypothetical protein CdifQCD-2_12149 [Clostridium difficile QCD-23m63] gi|296450133|ref|ZP_06891894.1| metal-dependent hydrolase [Clostridium difficile NAP08] gi|296878514|ref|ZP_06902519.1| metal-dependent hydrolase [Clostridium difficile NAP07] gi|296260896|gb|EFH07730.1| metal-dependent hydrolase [Clostridium difficile NAP08] gi|296430321|gb|EFH16163.1| metal-dependent hydrolase [Clostridium difficile NAP07] Length = 153 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 48/144 (33%), Positives = 67/144 (46%), Gaps = 3/144 (2%) Query: 24 DEIHLRTLCEVVFAKAVSNLI-SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 D + E + K ++ Y ++ E+SL F D+ I LN EYRG+D+ T+ Sbjct: 7 DRQDKLEVSEELLEKIKDIILECLDYEGYDDNYEVSLSFVDNKEIHELNREYRGVDRVTD 66 Query: 83 VLSFP--TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 VLSFP + LGDIV++ E ++ FE + LI H HLLGY Sbjct: 67 VLSFPLLSDDFEDVELEEESLGDIVVSLERALEQSIEYNHSFEREVCFLICHSMFHLLGY 126 Query: 141 DHVDDKDACVMEGLERSILEDLGI 164 DH D++ M E IL L I Sbjct: 127 DHDTDENTKEMREKEEHILNKLNI 150 >gi|254303748|ref|ZP_04971106.1| possible metal dependent hydrolase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323940|gb|EDK89190.1| possible metal dependent hydrolase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 162 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 1/130 (0%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-ASSD 94 + ++ + + LSL+ T++ I+ +N EYR D PT+V+SF + Sbjct: 29 LENYIKKVLELEKVESDRPLYLSLLLTNNENIQVINREYRDKDAPTDVISFAYHETEDFN 88 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 LGDI+++ E +E +A+ FE +++ HG LH+LGYDH+++ D +M Sbjct: 89 IGPYDTLGDIIISLERVEEQASEYNHSFEREFYYVLTHGILHILGYDHIEEDDKKLMRER 148 Query: 155 ERSILEDLGI 164 E +IL G Sbjct: 149 EEAILSSFGY 158 >gi|312144004|ref|YP_003995450.1| protein of unknown function UPF0054 [Halanaerobium sp. 'sapolanicus'] gi|311904655|gb|ADQ15096.1| protein of unknown function UPF0054 [Halanaerobium sp. 'sapolanicus'] Length = 143 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 11/151 (7%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I VE D + + + + AK + I+ + E+S+ F + I+ LN +Y Sbjct: 2 INVEFNDMQDFLEIDQKMKDLLAKVI---ITAAEVEGYSGGEVSVAFVSNEEIKKLNKKY 58 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 R ID T+VLSFP +LGDI+++ E +A G + L +L +HG Sbjct: 59 RNIDAATDVLSFPIDDE--------VLGDIIISSERAVSQAEEYGHSLKRELAYLTVHGI 110 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LHL GYDH ++ M E IL +L ++ Sbjct: 111 LHLFGYDHHGQEEKNKMRQKEERILTELDLS 141 >gi|307700639|ref|ZP_07637667.1| translation metalloprotein YbeY [Mobiluncus mulieris FB024-16] gi|307614169|gb|EFN93410.1| translation metalloprotein YbeY [Mobiluncus mulieris FB024-16] Length = 148 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 4/123 (3%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL---- 99 E++L+ D + L+ + + PT+VLSFP + Sbjct: 22 FCLEQLYVSPAAEVNLMMVDMATMTDLHIRWMDLPGPTDVLSFPMDELTPGQEGQPSAGG 81 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 MLGDIVL ++ +A G ++ L +HG LHLLG+DHV +++ M L+R +L Sbjct: 82 MLGDIVLCPDVAAEQARDAGHSAVEEMLLLTVHGLLHLLGFDHVTEEEEKTMFTLQRRLL 141 Query: 160 EDL 162 Sbjct: 142 LSF 144 >gi|229829053|ref|ZP_04455122.1| hypothetical protein GCWU000342_01138 [Shuttleworthia satelles DSM 14600] gi|229792216|gb|EEP28330.1| hypothetical protein GCWU000342_01138 [Shuttleworthia satelles DSM 14600] Length = 164 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 17/154 (11%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + L + + + + F E+S+ D R+ +N EYR ID+PT+VLS Sbjct: 11 LDLPFDYKKLLETVIRKALDYERF--PFEAEVSVTLVDLDRMHQINREYRQIDRPTDVLS 68 Query: 86 FPTAFAS---------------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 FP + +LGDIVL + +A G LI Sbjct: 69 FPFIDYPAPGDFSEIEKTDDFFNPDSGEAVLGDIVLCIPRLVSQAQDYGHSTRREFAFLI 128 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 H LHL+GYDH+ D + ME + +L+ LGI Sbjct: 129 AHSMLHLMGYDHMTDAERIDMERRQSEMLDQLGI 162 >gi|325849563|ref|ZP_08170801.1| translation metalloprotein YbeY [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480044|gb|EGC83121.1| translation metalloprotein YbeY [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 154 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 51/147 (34%), Positives = 78/147 (53%), Gaps = 6/147 (4%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D L + V + K V E E+SL F D +I LN ++RGID+ T+V Sbjct: 6 DNTTNEDLTLQKDLEKVIKEVLKVENVDEKKCEISLSFVDEIKIRDLNKDFRGIDRVTDV 65 Query: 84 LSFPTAFASSD------GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 LSFP ++ LMLGD+V+ ++ +A LG FE +++L H LHL Sbjct: 66 LSFPIEDFFNEDRKTLLEKPYLMLGDVVICTDVARKQAKELGHSFEREIMYLTCHSILHL 125 Query: 138 LGYDHVDDKDACVMEGLERSILEDLGI 164 LGYDH++D D +M E+ ++++LG+ Sbjct: 126 LGYDHMEDDDKKIMRSKEKQVMKNLGV 152 >gi|299822888|ref|ZP_07054774.1| probable metalloprotease [Listeria grayi DSM 20601] gi|299816417|gb|EFI83655.1| probable metalloprotease [Listeria grayi DSM 20601] Length = 161 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 18/167 (10%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 +PRL+L + E E + + FA Y E E+S+ FTD+ RI Sbjct: 1 MPRLELDMIDETEKLPKETNALVFDILQFAA--------DYLKLEEGTEMSVTFTDNERI 52 Query: 68 ETLNFEYRGIDKPTNVLSFP----------TAFASSDGCSSLMLGDIVLAYEIIEIEANV 117 +N EYR D+ T+V+SF + + LGDI+++ E E +A Sbjct: 53 REINREYRDKDQATDVISFALEELGEGETEIDWGELEVEVPRNLGDIIISTEKAEEQAAS 112 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G E + L +HG LHLLGYDH++ ++ VM GL++ +L+ G+ Sbjct: 113 YGHTKEREVGFLAVHGLLHLLGYDHMEKEEEKVMFGLQKEVLDAYGL 159 >gi|119493099|ref|ZP_01624024.1| hypothetical protein L8106_27841 [Lyngbya sp. PCC 8106] gi|119452844|gb|EAW34019.1| hypothetical protein L8106_27841 [Lyngbya sp. PCC 8106] Length = 196 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 79/188 (42%), Gaps = 32/188 (17%) Query: 8 LPRLDLQIAVENALWGDEIH----------------------LRTLCEVVFAKAVSNLIS 45 + ++ L++ V++ W E E F + S L Sbjct: 1 MSQVSLEVNVQDCFWLSEESETAPKQQKPPVDGSVENLSCPISPQTWEQWFTQWFSILNP 60 Query: 46 KGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS-------- 97 V EL+L TD+ I+ LN +YR +D PT+VL+F T Sbjct: 61 NIPQV--RSYELNLRLTDNTEIQQLNAQYRSLDVPTDVLAFATLEVGFPKLPASEMKASQ 118 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 SL LGD+V++ E +A G + L L HGFLHLLG+DH DD+ M + Sbjct: 119 SLDLGDLVISVETAARQAQQQGHSLKIELGWLAAHGFLHLLGWDHPDDRTLIQMLDQQVI 178 Query: 158 ILEDLGIN 165 +L+ +G+ Sbjct: 179 MLQSVGLE 186 >gi|312127664|ref|YP_003992538.1| hypothetical protein Calhy_1452 [Caldicellulosiruptor hydrothermalis 108] gi|311777683|gb|ADQ07169.1| protein of unknown function UPF0054 [Caldicellulosiruptor hydrothermalis 108] Length = 158 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 12/158 (7%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N D++ + + +++ N I F++E E+S++ D++ I+ LN Y Sbjct: 3 IFIQNQ--QDKVDVDQHISKIIEESIVNTIK--VFLEEENFEISVLIVDNNFIKELNRNY 58 Query: 75 RGIDKPTNVLSFPTAFASSDG--------CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 R ++K T+VLSFP + + LGDIV++ E +A G E + Sbjct: 59 RNVNKETDVLSFPIFEFKNGKLLEDIVIMEDEIPLGDIVISIEKAAQQAKEFGHSLEREV 118 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +L +H LHLLG+DH+++ D VM E IL+ +G+ Sbjct: 119 AYLTVHSVLHLLGFDHIEEDDRKVMRKYEEQILDSMGL 156 >gi|309811100|ref|ZP_07704898.1| translation metalloprotein YbeY [Dermacoccus sp. Ellin185] gi|308435064|gb|EFP58898.1| translation metalloprotein YbeY [Dermacoccus sp. Ellin185] Length = 168 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + IA E + + + VELS+ D +ETL Sbjct: 1 MTIDIANETDVDVELDEIHDCARYAMDAM----------FVHPNVELSIRIIDEAAMETL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ + PT+V+SFP + + MLGDIVL + +A G + L Sbjct: 51 HVQWMDLPGPTDVMSFPMDELTPGSEREPSQEGMLGDIVLCPSVAAAQAAAAGHDTMEEL 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L +HG LHLLGYDH + + M L+R+IL Sbjct: 111 LLLTVHGVLHLLGYDHAEPDERVEMFELQRTIL 143 >gi|259503179|ref|ZP_05746081.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259168836|gb|EEW53331.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 159 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 10/131 (7%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------ 97 + G + E+S+ + I LN +YRG+D+ T+VLSF + Sbjct: 27 FAAGKLSLKANTEMSVTLMTNPAIRKLNQQYRGVDRATDVLSFAAEERGDETPIIMAPEL 86 Query: 98 ----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 LGD+ ++ + + +A LG + L L++HGFLHL GYDH + D M Sbjct: 87 AAEIPENLGDLFVSVDKVAEQAKFLGHSADRELGFLVVHGFLHLNGYDHEEPADEQRMFD 146 Query: 154 LERSILEDLGI 164 L+R IL + G+ Sbjct: 147 LQREILNEYGL 157 >gi|58337484|ref|YP_194069.1| hypothetical protein LBA1202 [Lactobacillus acidophilus NCFM] gi|227904120|ref|ZP_04021925.1| metal-dependent hydrolase [Lactobacillus acidophilus ATCC 4796] gi|62901404|sp|Q5FJT6|RRMF_LACAC RecName: Full=Probable rRNA maturation factor gi|58254801|gb|AAV43038.1| hypothetical protein LBA1202 [Lactobacillus acidophilus NCFM] gi|227868139|gb|EEJ75560.1| metal-dependent hydrolase [Lactobacillus acidophilus ATCC 4796] Length = 174 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + + L+ +K K+N +E+S+ F + R +N +YR Sbjct: 5 DITYNDEVGFLDDEKRDWKTWIMKLLLLAKKEIGKDNNLEMSINFVNEDRSHEINLKYRD 64 Query: 77 IDKPTNVLSFPTAFA---------SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D +GD+ + +I + G F+ Sbjct: 65 KDRPTDVISFAIEDGEDSIDLAAFKDDPDFQEDIGDLFMCPSVISRHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + I+HGFLHL GYDH++ +A M G++ +LED G+ Sbjct: 125 YTIVHGFLHLNGYDHIEPDEAKEMFGIQGKVLEDYGLP 162 >gi|71892097|ref|YP_277827.1| hypothetical protein BPEN_324 [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123641012|sp|Q492Z0|RRMF_BLOPB RecName: Full=Probable rRNA maturation factor gi|71796203|gb|AAZ40954.1| conserved hypothetical protein [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 157 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 51/128 (39%), Positives = 75/128 (58%), Gaps = 2/128 (1%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 K + +S + + + +EL++ D + LN+ Y D PTNVLSFP F G Sbjct: 23 RKMFQSWVSAIFSIYKKKIELTVRIVDIKEMHYLNWYYLKKDCPTNVLSFP--FTPPLGM 80 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 S +LGD+VL +IIE E+ +H H+IIHG LHLLGY+H+ DK+A +M+ +ER Sbjct: 81 KSPLLGDVVLCRQIIEYESKEKNVPGRSHWAHMIIHGSLHLLGYNHIVDKEAILMQRVER 140 Query: 157 SILEDLGI 164 +IL+ G Sbjct: 141 NILQKCGY 148 >gi|229552358|ref|ZP_04441083.1| possible metal-dependent hydrolase [Lactobacillus rhamnosus LMS2-1] gi|258539729|ref|YP_003174228.1| metalloprotease [Lactobacillus rhamnosus Lc 705] gi|229314340|gb|EEN80313.1| possible metal-dependent hydrolase [Lactobacillus rhamnosus LMS2-1] gi|257151405|emb|CAR90377.1| Metalloprotease [Lactobacillus rhamnosus Lc 705] Length = 152 Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 4/126 (3%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----GCSS 98 N E+S+ I+ +N EYR D+ T+V+SF D + Sbjct: 25 AFCGQQLALPNDTEMSITIVGDDAIQKINREYRDTDRATDVISFAIEDGEDDLPLMPGMA 84 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +GD+ + + A G FE L + ++HGFLHL GYDH+ +D VM L++ I Sbjct: 85 KNIGDLFIDPLTVRRHAKEYGHSFERELGYTVVHGFLHLNGYDHIKPEDEAVMIPLQKKI 144 Query: 159 LEDLGI 164 L G+ Sbjct: 145 LTAYGL 150 >gi|15676444|ref|NP_273583.1| hypothetical protein NMB0538 [Neisseria meningitidis MC58] gi|26006912|sp|Q9K0P7|RRMF_NEIMB RecName: Full=Probable rRNA maturation factor gi|7225763|gb|AAF40967.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|325139809|gb|EGC62342.1| putative metalloprotease [Neisseria meningitidis CU385] gi|325200774|gb|ADY96229.1| conserved hypothetical protein TIGR00043 [Neisseria meningitidis H44/76] Length = 169 Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 88 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 148 IMEAEEIRLMRAAGFPNPYQED 169 >gi|218767660|ref|YP_002342172.1| hypothetical protein NMA0717 [Neisseria meningitidis Z2491] gi|26006911|sp|Q9JVS5|RRMF_NEIMA RecName: Full=Probable rRNA maturation factor gi|121051668|emb|CAM07971.1| hypothetical protein NMA0717 [Neisseria meningitidis Z2491] Length = 171 Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + GY ++SL+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKSGY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 88 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 148 IMEAEEIRLMLAAGFPNPYQED 169 >gi|113478351|ref|YP_724412.1| putative metalloprotease [Trichodesmium erythraeum IMS101] gi|122964299|sp|Q10UY5|RRMF_TRIEI RecName: Full=Probable rRNA maturation factor gi|110169399|gb|ABG53939.1| protein of unknown function UPF0054 [Trichodesmium erythraeum IMS101] Length = 183 Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 24/175 (13%) Query: 11 LDLQIAVENALWGDEIHLRTL----------------CEVVFAKAVSNLISKGYFVKENI 54 + L++ +++ W ++ L E F K + L + Sbjct: 1 MYLKVNIQDYFWSSSSEVKKLKLQEDRDQKCPIFFYRWEYWFQKWLEILQPNIPPAQN-- 58 Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIVLAY 108 ELSL TD I+ LN +YR ++PT+VL+F L LGDIV++ Sbjct: 59 YELSLRLTDDSEIQILNNKYRYQNQPTDVLAFANLEVDIPQPEVVDSDLQLYLGDIVISV 118 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 E +A G L L HGFLHLLG+DH+D + M + +L +G Sbjct: 119 ETAFQQAKQQGHPLITELTWLAAHGFLHLLGWDHLDQESWQKMVKQQLFLLNAVG 173 >gi|59800603|ref|YP_207315.1| hypothetical protein NGO0145 [Neisseria gonorrhoeae FA 1090] gi|268596185|ref|ZP_06130352.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|291044524|ref|ZP_06570233.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293397660|ref|ZP_06641866.1| hypothetical protein NGNG_00646 [Neisseria gonorrhoeae F62] gi|59717498|gb|AAW88903.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|268549973|gb|EEZ44992.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|291011418|gb|EFE03414.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291611606|gb|EFF40675.1| hypothetical protein NGNG_00646 [Neisseria gonorrhoeae F62] Length = 211 Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++ L+ D N +YRG D TNVLSF Sbjct: 72 AERDFYRWAWSALKNEYL----RADIGLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 127 Query: 92 SSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C + GD+++ +++ EA GK E H HL IHG LHL+GYDH+ D +A Sbjct: 128 EILPCQVSERLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGTLHLMGYDHIKDDEAE 187 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY D Sbjct: 188 IMEAEEIRLMRAAGYPNPYRED 209 >gi|332652573|ref|ZP_08418318.1| putative metalloprotease [Ruminococcaceae bacterium D16] gi|332517719|gb|EGJ47322.1| putative metalloprotease [Ruminococcaceae bacterium D16] Length = 322 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 18/165 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L+ +I +E E+ + + + ++ + E+ ++FTD I + Sbjct: 162 LNHEIIIET-----EVDGAEEYADLLRQVIPAALAAEGV--DVPCEVDVLFTDDEGIHQI 214 Query: 71 NFEYRGIDKPTNVLSFPT----------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 N E R +D+PT+VLSFP + G + + LGD+V++ E + + G Sbjct: 215 NLEQREVDRPTDVLSFPMFDLQPGEHPTQEDADPGDNLVPLGDMVISLERAKAQGEEYGH 274 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGI 164 + +L +H LHLLGYDH+D+ M E IL LGI Sbjct: 275 GTRREVAYLAVHSVLHLLGYDHMDEGPMKKQMRQREEEILGTLGI 319 >gi|255020723|ref|ZP_05292783.1| hypothetical protein ACA_1687 [Acidithiobacillus caldus ATCC 51756] gi|254969839|gb|EET27341.1| hypothetical protein ACA_1687 [Acidithiobacillus caldus ATCC 51756] Length = 169 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 53/141 (37%), Positives = 73/141 (51%), Gaps = 1/141 (0%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + LC A A++ + + LSL F + + LN ++R PTN LSFPT Sbjct: 25 QRLCRTAIAAALTVPSPRLANGDGVRIGLSLAFVGAAAMAELNGQFRQRPYPTNCLSFPT 84 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + LGDIVLA I+ EA GK +H HL+IH LHLLG+DH + +A Sbjct: 85 PSGAGPY-RQDFLGDIVLAPAIVLREAVEQGKRPADHYRHLLIHSTLHLLGFDHEEAAEA 143 Query: 149 CVMEGLERSILEDLGINDPYE 169 ME LE +L +G+ DPY+ Sbjct: 144 AEMEALETHLLAQMGVADPYQ 164 >gi|194097776|ref|YP_002000817.1| Putative metalloprotease NGO0145 [Neisseria gonorrhoeae NCCP11945] gi|268594133|ref|ZP_06128300.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|193933066|gb|ACF28890.1| Putative metalloprotease NGO0145 [Neisseria gonorrhoeae NCCP11945] gi|268547522|gb|EEZ42940.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|317163557|gb|ADV07098.1| Putative metalloprotease [Neisseria gonorrhoeae TCDC-NG08107] Length = 211 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++ L+ D N +YRG D TNVLSF Sbjct: 72 AERDFYRWAWSALKNEYL----RADIGLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 127 Query: 92 SSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C + GD+++ +++ EA GK E H HL IHG LHL+GYDH+ D +A Sbjct: 128 EILPCQVSERLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGTLHLMGYDHIKDDEAE 187 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY D Sbjct: 188 IMEAEEIRLMRAAGYPNPYRED 209 >gi|254455702|ref|ZP_05069131.1| conserved hypothetical protein TIGR00043 [Candidatus Pelagibacter sp. HTCC7211] gi|207082704|gb|EDZ60130.1| conserved hypothetical protein TIGR00043 [Candidatus Pelagibacter sp. HTCC7211] Length = 153 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 5/153 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + + + W +I + + L K Y V L+L+ +++ I+ Sbjct: 1 MIKIDVLSDERAWSKKIRKKKFFFNN----LCKLFPKKYQYLNKEVSLTLLLSNNKGIKK 56 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN ++R +K T++LSFP LGDI+++Y + K F++ ++ + Sbjct: 57 LNKDFRNKNKSTDILSFPFN-NKIKISKKTYLGDIIISYNFMNKPRTQNLKSFQDKVIKI 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 IHGFLHLL +DH+ +KD M E I + + Sbjct: 116 FIHGFLHLLNFDHIKNKDYKNMLREENRIYKSI 148 >gi|78223573|ref|YP_385320.1| hypothetical protein Gmet_2370 [Geobacter metallireducens GS-15] gi|123742815|sp|Q39T29|RRMF_GEOMG RecName: Full=Probable rRNA maturation factor gi|78194828|gb|ABB32595.1| protein of unknown function UPF0054 [Geobacter metallireducens GS-15] Length = 150 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 42/112 (37%), Positives = 58/112 (51%), Gaps = 2/112 (1%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 ELS+V T I +N EY D+PTNV+SF A + MLGD++++ + Sbjct: 33 PDSELSVVITGDLGIRRVNREYLHKDRPTNVISFAMAEGEFGALNPAMLGDVIISADTAA 92 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVD--DKDACVMEGLERSILEDL 162 EA G F + L L++HG LH+ GYDH + +A ME ER I L Sbjct: 93 REAEEGGVSFWSRLCFLLLHGILHITGYDHERSGEAEARRMEAKEREIFAIL 144 >gi|295396067|ref|ZP_06806250.1| probable metalloprotease [Brevibacterium mcbrellneri ATCC 49030] gi|294971008|gb|EFG46900.1| probable metalloprotease [Brevibacterium mcbrellneri ATCC 49030] Length = 159 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 10/149 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E L D ++ + VELS+ F + L Sbjct: 1 MSIELGNETELPVDLERVQECARFALDTVNVH----------PAVELSIRFISDDVMSEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 + + G+ T+V+SFP MLGDIV++ + +A G + + L Sbjct: 51 HETWMGLPGTTDVMSFPMDELKPGHDEPGMLGDIVISPTVAAEQAAAAGHSMSDEIYLLT 110 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +HG LHLLGYDH + M L+R +L Sbjct: 111 VHGILHLLGYDHGEPDQKSEMFALQRKLL 139 >gi|298493060|ref|YP_003723237.1| hypothetical protein Aazo_4995 ['Nostoc azollae' 0708] gi|298234978|gb|ADI66114.1| protein of unknown function UPF0054 ['Nostoc azollae' 0708] Length = 178 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 18/157 (11%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 Q+ V + W F K + L E+ L T+ +I+ LN + Sbjct: 28 QLLVSDDTWK----------AWFDKWLEILTPDLPPAL--SYEIGLRLTNDTQIQELNAQ 75 Query: 74 YRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 YR +KPT+VL+F + L LGDI+++ + +A L Sbjct: 76 YRQENKPTDVLAFASLETDFPQSEEMLASQPLYLGDIIVSLDTGNRQAQQQEHSLTTELA 135 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L HG LHL+G+DH D++ M + +L+ +GI Sbjct: 136 WLTAHGLLHLVGWDHPDEESLMEMLKQQVILLDGVGI 172 >gi|325141764|gb|EGC64216.1| hypothetical protein TIGR00043 [Neisseria meningitidis 961-5945] gi|325197750|gb|ADY93206.1| conserved hypothetical protein TIGR00043 [Neisseria meningitidis G2136] Length = 171 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 88 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 148 IMEAEEIRLMRAAGFPNPYQED 169 >gi|320094218|ref|ZP_08026022.1| metalloprotease [Actinomyces sp. oral taxon 178 str. F0338] gi|319978843|gb|EFW10382.1| metalloprotease [Actinomyces sp. oral taxon 178 str. F0338] Length = 149 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 4/111 (3%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAY 108 + EL+++F + +E L+ ++ + PT+V+SFP + MLGDI + Sbjct: 32 SDAELNILFIGAGPMEELHVKWLDLPGPTDVMSFPMDELKPGTADNPTPPGMLGDICICP 91 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 E+ +A G ++ L HG LHLLGYDH +D + M L+R +L Sbjct: 92 EVATRQAADSGHTAAEEMLLLATHGILHLLGYDHAEDAERAEMFALQRKLL 142 >gi|325133946|gb|EGC56602.1| hypothetical protein TIGR00043 [Neisseria meningitidis M13399] Length = 171 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 88 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGTLHLMGYDHIEDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 148 IMEAEEIRLMRAAGFPNPYQED 169 >gi|116872896|ref|YP_849677.1| putative metalloprotease [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466300|sp|A0AIR6|RRMF_LISW6 RecName: Full=Probable rRNA maturation factor gi|116741774|emb|CAK20898.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 161 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 18/168 (10%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 +P L++ + E DE L E + + GY + ELSL FT + I Sbjct: 1 MPVLEIDLLDETNKLLDEDK--QLVENILQ------FAAGYLKIDEGTELSLTFTTNEGI 52 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCS----------SLMLGDIVLAYEIIEIEANV 117 +N EYR D+ T+V+SF MLGDI+++ E E +A Sbjct: 53 REINREYRNKDQATDVISFALEEMGEGETEIDWADFDLETPKMLGDIIISTEKAEEQAKD 112 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G L L +HG LHLLGYDH++ + +M GL++ +L+ G+ Sbjct: 113 YGHTKARELGFLAVHGLLHLLGYDHMEPDEEKIMFGLQKEVLDAYGLE 160 >gi|227529164|ref|ZP_03959213.1| metal-dependent hydrolase [Lactobacillus vaginalis ATCC 49540] gi|227350889|gb|EEJ41180.1| metal-dependent hydrolase [Lactobacillus vaginalis ATCC 49540] Length = 159 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 17/165 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++L+I ++ L + + + + E+S+ ++ I L Sbjct: 1 MELEIF-DHTSEKVSTAHIELIKKILD------FAGNKLKLADDTEMSVTLVNNPEIREL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS----------SLMLGDIVLAYEIIEIEANVLGK 120 N YR +D+ T+VLSF + ++ + LGD+ ++ + + +A LG Sbjct: 54 NSRYRHVDRATDVLSFAAEESGNETPIILAPELAAELPVNLGDLFISIDKVAEQAKFLGH 113 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 F+ L L++HGFLHL GYDH +D M L+R IL+ G+ Sbjct: 114 SFDRELGFLVVHGFLHLNGYDHEQPEDEKKMFTLQREILDQYGLK 158 >gi|78185693|ref|YP_378127.1| hypothetical protein Syncc9902_2126 [Synechococcus sp. CC9902] gi|123580639|sp|Q3AUM7|RRMF_SYNS9 RecName: Full=Probable rRNA maturation factor gi|78169987|gb|ABB27084.1| Protein of unknown function UPF0054 [Synechococcus sp. CC9902] Length = 180 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 4/138 (2%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 L+ E ++ +L + V L L FT+ I LN ++R PT+VLSF Sbjct: 32 LQQWIE--LVRSNPDLSCPSVVRQAPEVSLGLHFTNDAGIAELNSQWRQKSGPTDVLSFA 89 Query: 88 TAFASSD--GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 + D ++ LGDI+++ + + +A L LI HG LHLLG+DH D+ Sbjct: 90 ALDDTPDWLEGEAVELGDIIVSVDTAQRQAQNHNHSLGYELHWLISHGLLHLLGWDHPDE 149 Query: 146 KDACVMEGLERSILEDLG 163 + M L+ +L+ G Sbjct: 150 RRLSGMLALQERLLDSTG 167 >gi|315645981|ref|ZP_07899102.1| hypothetical protein PVOR_11039 [Paenibacillus vortex V453] gi|315278742|gb|EFU42056.1| hypothetical protein PVOR_11039 [Paenibacillus vortex V453] Length = 165 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 19/168 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + LQ+A W +E + E A + L G E+ L F D +I L Sbjct: 1 MSLQLA-----WNNEQEEFHIGEEFIAVLEAILQKAGEAEGVTDGEVDLTFVDDGQIHEL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS--------------SLMLGDIVLAYEIIEIEAN 116 N EYRGID+PT+VLSF ++D +LGDI+++ + ++++ Sbjct: 56 NREYRGIDRPTDVLSFAMNEITNDELEIIYELDEGEELESVPDVLGDIIISVQRAKLQSE 115 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G E L L +HGFLHLLGYDH D+ M G + ++L ++G+ Sbjct: 116 EYGHSLERELGFLFVHGFLHLLGYDHQDEASEAAMMGKQEAVLAEVGL 163 >gi|187925304|ref|YP_001896946.1| hypothetical protein Bphyt_3331 [Burkholderia phytofirmans PsJN] gi|238689582|sp|B2SYI7|RRMF_BURPP RecName: Full=Probable rRNA maturation factor gi|187716498|gb|ACD17722.1| protein of unknown function UPF0054 [Burkholderia phytofirmans PsJN] Length = 153 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 54/161 (33%), Positives = 77/161 (47%), Gaps = 12/161 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P+L L + + ++ V+ I F EL++ F D+ Sbjct: 5 PKLTLNL-----QFPAARSWPEHKALLPRATVAGWIKAALFAD---GELTVRFVDADEGR 56 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 TLN YRG D TNVL+F A + D + GD++L ++E EA GK H H Sbjct: 57 TLNRTYRGKDYSTNVLTFAYAESEDD----PVTGDLILCCPVVEKEAAEQGKPLIAHYAH 112 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH +++A ME +E IL LG DPY+ Sbjct: 113 LLVHGTLHAQGYDHEVEEEAEEMEAIETEILAKLGFPDPYQ 153 >gi|302391406|ref|YP_003827226.1| hypothetical protein Acear_0619 [Acetohalobium arabaticum DSM 5501] gi|302203483|gb|ADL12161.1| protein of unknown function UPF0054 [Acetohalobium arabaticum DSM 5501] Length = 141 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 15/155 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++QI D+I + + + V + E+S+ D+ I+ L Sbjct: 1 MEVQIN----NLQDKIEINDGVRELITEVVREVEKSEGV---KAREVSIALVDNEYIKEL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N EYRG+D+PT+VLSFP MLGDI+++ E E +A + + L Sbjct: 54 NAEYRGLDEPTDVLSFPLGEE--------MLGDIIISLERAESQAEEYNHSLDREMGFLT 105 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +HG LHLLGYDH +++ M E +L L + Sbjct: 106 VHGMLHLLGYDHKEEEAKEEMRNREEKVLNKLDLE 140 >gi|288916972|ref|ZP_06411344.1| protein of unknown function UPF0054 [Frankia sp. EUN1f] gi|288351681|gb|EFC85886.1| protein of unknown function UPF0054 [Frankia sp. EUN1f] Length = 159 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 7/121 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-------GCSSLMLGDI 104 + ELS++ + + L+ Y G D PT+VL+FP A + +LGD+ Sbjct: 33 NPLAELSVMLVEVDAMTDLHVRYMGEDGPTDVLAFPQDEAFEPSWSESVEEDPTTLLGDV 92 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 VL E+ +A G E L L HG LHLLGYDH + ++ M L+ S+L I Sbjct: 93 VLCPEVARRQAGQAGHGMERELHILCTHGILHLLGYDHAEPEEEREMWKLQNSLLASWDI 152 Query: 165 N 165 Sbjct: 153 A 153 >gi|291545856|emb|CBL18964.1| conserved hypothetical protein TIGR00043 [Ruminococcus sp. SR1/5] Length = 164 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 22/170 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I E I L V K + +++LV TD+ I+ + Sbjct: 1 MTINIEYETDQELG-IDYAALASQVADKVLEM------EKCPYDGQVNLVLTDNEEIKRV 53 Query: 71 NFEYRGIDKPTNVLSFPT---------------AFASSDGCSSLMLGDIVLAYEIIEIEA 115 N E+R I PT+VLSFP L+LGDI+++ + +A Sbjct: 54 NTEFRNIQAPTDVLSFPMIPFETPADYSVVEEDESYFDLDSDELLLGDIMISVPKVFAQA 113 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G L+ H LHLLGYDH+ + +A VME + + L++LGIN Sbjct: 114 EEYGHSVTREFCFLVAHSMLHLLGYDHMTEDEAKVMEAKQAAALKELGIN 163 >gi|312876030|ref|ZP_07736019.1| protein of unknown function UPF0054 [Caldicellulosiruptor lactoaceticus 6A] gi|311797228|gb|EFR13568.1| protein of unknown function UPF0054 [Caldicellulosiruptor lactoaceticus 6A] Length = 158 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 12/158 (7%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N D++ + + +++ N I F++E E+S++ D++ I+ LN Y Sbjct: 3 IFIQNQ--QDKVDVDQHISKIIEESIVNTIK--VFLEEENFEISVLIVDNNFIKELNKNY 58 Query: 75 RGIDKPTNVLSFPTAFASSDG--------CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 R ++K T+VLSFP + + LGDIV++ E +A G E + Sbjct: 59 RNVNKETDVLSFPIFEFKNGKLLEDIVIMEDEIPLGDIVISIEKAAQQAEEFGHSLEREV 118 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +L +H LHLLG+DH++D D VM E IL+ +G+ Sbjct: 119 AYLTVHSVLHLLGFDHIEDDDRKVMREYEEQILQSMGL 156 >gi|261378228|ref|ZP_05982801.1| putative metalloprotease [Neisseria cinerea ATCC 14685] gi|269145304|gb|EEZ71722.1| putative metalloprotease [Neisseria cinerea ATCC 14685] Length = 171 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 2/137 (1%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SD 94 + + ++SL+ D N +YRG D TNVLSF D Sbjct: 33 KRDFYRWAWSALKDEYRRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPD 92 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 S + GD+V+ +++ EA GK E H HL IHG LHL+GYDH++D +A +ME Sbjct: 93 QFSDGLYGDLVICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAEIMEAE 152 Query: 155 ERSILEDLGINDPYEVD 171 E ++ G +PY+ D Sbjct: 153 EIRLMLAAGFPNPYQED 169 >gi|261380097|ref|ZP_05984670.1| putative metalloprotease [Neisseria subflava NJ9703] gi|284797315|gb|EFC52662.1| putative metalloprotease [Neisseria subflava NJ9703] Length = 171 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 71/141 (50%), Gaps = 6/141 (4%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 33 ERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGE 88 Query: 93 --SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 D S + GD+V+ +++ EA GK E H HL IHG LHL+GYDH++D +A + Sbjct: 89 ILPDQFSDGLYGDLVICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAEI 148 Query: 151 MEGLERSILEDLGINDPYEVD 171 ME E ++ G +PY+ D Sbjct: 149 MEAEEIRLMLAAGFPNPYQED 169 >gi|310643041|ref|YP_003947799.1| metalloprotease [Paenibacillus polymyxa SC2] gi|309247991|gb|ADO57558.1| Putative metalloprotease [Paenibacillus polymyxa SC2] Length = 165 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 14/158 (8%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 W +E + + E + + L G E++L F + +I LN +YRGID+P Sbjct: 6 AWNNEQNDMVINESLITLLNTLLEQAGKAEGVTDGEVALTFVNDDQIHELNRDYRGIDRP 65 Query: 81 TNVLSFPTAF--------------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 T+VLSF + +LGDI+++ + + ++ G E + Sbjct: 66 TDVLSFAMKETLDEELEIIYEPTEDNPLNDVPDVLGDIIISVQTAQAQSEEYGHSIEREI 125 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L +HGFLHLLGYDH DD M G + ++L +G+ Sbjct: 126 GFLFVHGFLHLLGYDHQDDASEAEMMGKQEAVLAQVGL 163 >gi|240013460|ref|ZP_04720373.1| hypothetical protein NgonD_02219 [Neisseria gonorrhoeae DGI18] gi|240015899|ref|ZP_04722439.1| hypothetical protein NgonFA_01822 [Neisseria gonorrhoeae FA6140] gi|240080039|ref|ZP_04724582.1| hypothetical protein NgonF_01825 [Neisseria gonorrhoeae FA19] gi|240112248|ref|ZP_04726738.1| hypothetical protein NgonM_01454 [Neisseria gonorrhoeae MS11] gi|240114993|ref|ZP_04729055.1| hypothetical protein NgonPID1_01852 [Neisseria gonorrhoeae PID18] gi|240117278|ref|ZP_04731340.1| hypothetical protein NgonPID_02274 [Neisseria gonorrhoeae PID1] gi|240120531|ref|ZP_04733493.1| hypothetical protein NgonPI_01904 [Neisseria gonorrhoeae PID24-1] gi|240127539|ref|ZP_04740200.1| hypothetical protein NgonS_02629 [Neisseria gonorrhoeae SK-93-1035] gi|260441192|ref|ZP_05795008.1| hypothetical protein NgonDG_08936 [Neisseria gonorrhoeae DGI2] gi|268598309|ref|ZP_06132476.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268600661|ref|ZP_06134828.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268602973|ref|ZP_06137140.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268685916|ref|ZP_06152778.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|145572757|sp|Q5FA84|RRMF_NEIG1 RecName: Full=Probable rRNA maturation factor gi|268582440|gb|EEZ47116.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268584792|gb|EEZ49468.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268587104|gb|EEZ51780.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268626200|gb|EEZ58600.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] Length = 171 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++ L+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKNEYL----RADIGLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C + GD+++ +++ EA GK E H HL IHG LHL+GYDH+ D +A Sbjct: 88 EILPCQVSERLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGTLHLMGYDHIKDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY D Sbjct: 148 IMEAEEIRLMRAAGYPNPYRED 169 >gi|229824784|ref|ZP_04450853.1| hypothetical protein GCWU000182_00133 [Abiotrophia defectiva ATCC 49176] gi|229791113|gb|EEP27227.1| hypothetical protein GCWU000182_00133 [Abiotrophia defectiva ATCC 49176] Length = 168 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 23/170 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E D E V + + +E++++ T + I+ Sbjct: 1 MTILVENEAEREPDFD-----YEEVIKAVIEKTVETEN--CPYEIEVNVLLTGNDEIQEA 53 Query: 71 NFEYRGIDKPTNVLSFPTAFAS----------------SDGCSSLMLGDIVLAYEIIEIE 114 N +R ID+PT+VLSFP S + L+LGDI+++ + + + Sbjct: 54 NRNFRDIDRPTDVLSFPMVDYSSPSDFSTVNESPECYLNPETDELVLGDIMISVDKVYEQ 113 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 A G + LI H LHLLGYDH++D++ VME + ++LE LGI Sbjct: 114 AEEYGHSRKREFAFLIAHSMLHLLGYDHMEDEERVVMEAKQEAVLEALGI 163 >gi|225351948|ref|ZP_03742971.1| hypothetical protein BIFPSEUDO_03553 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157195|gb|EEG70534.1| hypothetical protein BIFPSEUDO_03553 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 181 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP ++M LGDIV+ + Sbjct: 36 DLTIMFVDPDPIAQLHMRWMNLEGPTDVMSFPMDELRPGDGRTVMEGVLGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH + M GL+R +L Sbjct: 96 QQALAAGHNTMEEMMLLTIHGILHLLGYDHATPEQERQMFGLQRQLL 142 >gi|313608753|gb|EFR84572.1| putative metalloprotease [Listeria monocytogenes FSL F2-208] Length = 161 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 74/168 (44%), Gaps = 18/168 (10%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + L++ + E E L E + + Y E ELSL FT + I Sbjct: 1 MTVLEIDLLDETKKLPAEDK--QLVENILQ------FAAEYLKIEQGTELSLTFTTNEGI 52 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCS----------SLMLGDIVLAYEIIEIEANV 117 +N EYR D+ T+V+SF MLGDI+++ E E +A Sbjct: 53 REINREYRDKDQATDVISFALEEMGDGETEIDWGEFDLETPRMLGDIIISTEKAEEQAKD 112 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G L L +HG LHLLGYDH++ + VM GL++ +L+ G+ Sbjct: 113 YGHTKARELGFLAVHGLLHLLGYDHMEPDEEKVMFGLQKEVLDAYGLE 160 >gi|241889939|ref|ZP_04777237.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379] gi|241863561|gb|EER67945.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379] Length = 157 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 14/159 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I +N L D L + ++ + I E+SL F I+ +N Sbjct: 4 VEIIDDNNLVEDSTKDMLL-------KLLECAAEYENIDTEITEMSLSFVSKEEIQEINR 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSL-------MLGDIVLAYEIIEIEANVLGKEFENH 125 +YRG D PT+V+SF D + +GD+++ +I +A F+ Sbjct: 57 DYRGKDVPTDVISFALNDEVEDEIDIIGLEDEINSIGDVIICVDIAHEQAKEYEHSFDRE 116 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + L +HGFLHLLGYDH+ ++D M G + ILE G+ Sbjct: 117 IGFLAVHGFLHLLGYDHMTEEDEKEMFGKQDEILEKFGL 155 >gi|239998277|ref|ZP_04718201.1| Putative metalloprotease NGO0145 [Neisseria gonorrhoeae 35/02] Length = 171 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++ L+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKNEYL----RADIGLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C + GD+++ +++ EA GK E H HL IHG LHL+GYDH+ D +A Sbjct: 88 EILPCQVSERLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGTLHLMGYDHIKDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY D Sbjct: 148 IMEAEEIRLMRAAGYPNPYRED 169 >gi|240125026|ref|ZP_04737912.1| hypothetical protein NgonSK_02174 [Neisseria gonorrhoeae SK-92-679] gi|254493055|ref|ZP_05106226.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268683613|ref|ZP_06150475.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|226512095|gb|EEH61440.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268623897|gb|EEZ56297.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] Length = 171 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++ L+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKNEY----RRADIGLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C + GD+++ +++ EA GK E H HL IHG LHL+GYDH+ D +A Sbjct: 88 EILPCQVSERLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGTLHLMGYDHIKDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY D Sbjct: 148 IMEAEEIRLMRAAGYPNPYRED 169 >gi|312793455|ref|YP_004026378.1| hypothetical protein Calkr_1257 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180595|gb|ADQ40765.1| protein of unknown function UPF0054 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 158 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 12/158 (7%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N D++ + + +++ N I F++E E+S++ D++ I+ LN Y Sbjct: 3 IIIQNQ--QDKVDVDQHISKIIEESIVNTIK--VFLEEENFEISVLIVDNNFIKELNKNY 58 Query: 75 RGIDKPTNVLSFPTAFASSDG--------CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 R ++K T+VLSFP + + LGDIV++ E +A G E + Sbjct: 59 RNVNKETDVLSFPIFEFKNGKLLEDIVIMEDEIPLGDIVISIEKAAQQAEEFGHSLEREV 118 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +L +H LHLLG+DH++D D VM E IL+ +G+ Sbjct: 119 AYLTVHSVLHLLGFDHIEDDDRKVMREYEEQILQSMGL 156 >gi|296532214|ref|ZP_06894964.1| possible metal-dependent hydrolase [Roseomonas cervicalis ATCC 49957] gi|296267458|gb|EFH13333.1| possible metal-dependent hydrolase [Roseomonas cervicalis ATCC 49957] Length = 159 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 76/161 (47%), Gaps = 13/161 (8%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKEN------IVELSLVFTDSHRIE 68 + VE+ W + A+A +++ F +N ++++ TD ++ Sbjct: 3 VIVESPAWHAAVPRAERLARRAAEAAWAEMAEDGFPLDNAPPGAPSGAMTVLLTDDRSVK 62 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN E+R KPTNVLSFP G LGDI LA ++ EA + HL H Sbjct: 63 RLNGEHRNKVKPTNVLSFP-------GEGFGHLGDIALALGVVRREARAAKRRVAAHLAH 115 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 L+ HG LHL G+DH+ +A ME E I+ L + +P+ Sbjct: 116 LVAHGTLHLGGHDHIQAGEARRMERAEARIMRRLALPNPWR 156 >gi|325686033|gb|EGD28091.1| metalloprotease [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 174 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ T + + + L+ +K K+N E+S+ F D R + +N +YR Sbjct: 5 DVSYSDEVGFLTKGDRDWEGWIMQLLLMAKKEIGKDNAQEMSINFVDEDRSQAINRDYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D + +GD+ + +IE + G F+ Sbjct: 65 KDRPTDVISFAIEDGDDGLDLAMFTQDPDFTEDIGDLFMCPSVIERHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + I+HG+LHL YDH++ +A M G++ +LE+ G+ Sbjct: 125 YTIVHGYLHLNCYDHIEPDEAKEMFGIQGKVLEEYGLP 162 >gi|316985396|gb|EFV64344.1| conserved hypothetical protein [Neisseria meningitidis H44/76] Length = 209 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 72 AERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 127 Query: 92 SSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 128 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAE 187 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 188 IMEAEEIRLMRAAGFPNPYQED 209 >gi|212696004|ref|ZP_03304132.1| hypothetical protein ANHYDRO_00540 [Anaerococcus hydrogenalis DSM 7454] gi|212676991|gb|EEB36598.1| hypothetical protein ANHYDRO_00540 [Anaerococcus hydrogenalis DSM 7454] Length = 154 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 6/147 (4%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D L + V + K V E E+SL F D +I LN ++R D+ T+V Sbjct: 6 DNTTNEDLTLQKDLEKVIKEVLKVENVDEKKCEISLSFVDEIKIRDLNKDFRQTDRVTDV 65 Query: 84 LSFPTAFASSD------GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 LSFP ++ LMLGD+V+ ++ +A LG FE +++L H LHL Sbjct: 66 LSFPIEDFFNEDRKTLLEKPYLMLGDVVICTDVARKQAKELGHSFEREIIYLTCHSILHL 125 Query: 138 LGYDHVDDKDACVMEGLERSILEDLGI 164 LGYDH+++ D +M E+ ++++LG+ Sbjct: 126 LGYDHMEEDDKKIMRLKEKQVMKNLGV 152 >gi|104774146|ref|YP_619126.1| hypothetical protein Ldb1253 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|122397141|sp|Q1G9W4|RRMF_LACDA RecName: Full=Probable rRNA maturation factor gi|103423227|emb|CAI98055.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325125926|gb|ADY85256.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 174 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ T + + + L+ +K K+N E+S+ F D R + +N +YR Sbjct: 5 DVSYSDEVGFLTKGDRDWEDWIMQLLLMAKKEIGKDNAQEMSINFVDEDRSQAINRDYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D + +GD+ + +IE + G F+ Sbjct: 65 KDRPTDVISFAIEDGDDGLDLSMFTQDPDFTEDIGDLFMCPSVIERHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + I+HG+LHL YDH++ +A M G++ +LE+ G+ Sbjct: 125 YTIVHGYLHLNCYDHIEPDEAKEMFGIQGKVLEEYGLP 162 >gi|116514236|ref|YP_813142.1| metal-dependent hydrolase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|313123896|ref|YP_004034155.1| metalloprotease [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|122275032|sp|Q04A18|RRMF_LACDB RecName: Full=Probable rRNA maturation factor gi|116093551|gb|ABJ58704.1| Predicted metal-dependent hydrolase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|312280459|gb|ADQ61178.1| Putative metalloprotease [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 174 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ T + + + L+ +K K+N E+S+ F D R + +N +YR Sbjct: 5 DVSYSDEVGFLTKGDRDWEDWIMQLLLMAKKEIGKDNAQEMSINFVDEDRSQAINRDYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D + +GD+ + +IE + G F+ Sbjct: 65 KDRPTDVISFAIEDGDDGLDLAMFTQDPDFTEDIGDLFMCPSVIERHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + I+HG+LHL YDH++ +A M G++ +LE+ G+ Sbjct: 125 YTIVHGYLHLNCYDHIEPDEAKEMFGIQGKVLEEYGLP 162 >gi|227514587|ref|ZP_03944636.1| metal-dependent hydrolase [Lactobacillus fermentum ATCC 14931] gi|227086998|gb|EEI22310.1| metal-dependent hydrolase [Lactobacillus fermentum ATCC 14931] Length = 157 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 10/149 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E L+ E + KA++ E+SL F + I LN +YRGID+ T+V+ Sbjct: 10 EGKLQPSQERLAEKALAQA--AERLDVPEQAEMSLTFVLNPEIRELNRDYRGIDRATDVI 67 Query: 85 SFPTAFASSDGCSSLML--------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 SF + GD+V++ + + +A L + L +L++HGFLH Sbjct: 68 SFAIEDDDDLANLPAEIRAELPVELGDLVISIDKVTEQALFLNHSADRELGYLLVHGFLH 127 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGIN 165 L GYDH + D M L+ IL+ LG++ Sbjct: 128 LNGYDHEEPADEKKMFTLQEEILDGLGLS 156 >gi|329766982|ref|ZP_08258510.1| hypothetical protein HMPREF0428_00207 [Gemella haemolysans M341] gi|328837707|gb|EGF87332.1| hypothetical protein HMPREF0428_00207 [Gemella haemolysans M341] Length = 157 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 14/159 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I +N L D L + ++ V I E+SL F I+ +N Sbjct: 4 VDIIDDNNLVEDSTKDMLL-------KLLECAAEYENVDTEITEMSLSFVSKEEIQEINR 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSL-------MLGDIVLAYEIIEIEANVLGKEFENH 125 +YRG D PT+V+SF D + +GD+++ +I +A F+ Sbjct: 57 DYRGKDVPTDVISFALNDEVEDEIDIIGLEDEINSIGDVIICVDIAHEQAKEYEHSFDRE 116 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + L +HGFLHLLGYDH++++D M G + ILE G+ Sbjct: 117 IGFLAVHGFLHLLGYDHMNEEDEKEMFGKQDEILEKFGL 155 >gi|260587672|ref|ZP_05853585.1| putative metalloprotease [Blautia hansenii DSM 20583] gi|331084038|ref|ZP_08333145.1| hypothetical protein HMPREF0992_02069 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541937|gb|EEX22506.1| putative metalloprotease [Blautia hansenii DSM 20583] gi|330402400|gb|EGG81970.1| hypothetical protein HMPREF0992_02069 [Lachnospiraceae bacterium 6_1_63FAA] Length = 164 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 22/169 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L + +E D L + V A+ Y E++LV T + I+ Sbjct: 1 MTLNLEMEYEENLD-FDYEELAKKVIEAALD------YEGCPYETEINLVLTGNEEIQQT 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD---------------GCSSLMLGDIVLAYEIIEIEA 115 N E+R ID+ T+VLSFP ++ L+LGDI++ ++ +A Sbjct: 54 NREFRNIDRVTDVLSFPMLDFTAPADFSVAEEDDTCFHPESGELILGDIMICIPRMQEQA 113 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G LI H LHL+GYDH++ ++A ME + IL LGI Sbjct: 114 ESYGHGQIREFAFLIAHSMLHLMGYDHMEPEEAKEMERKQEEILASLGI 162 >gi|184155314|ref|YP_001843654.1| hypothetical protein LAF_0838 [Lactobacillus fermentum IFO 3956] gi|238692971|sp|B2GBZ2|RRMF_LACF3 RecName: Full=Probable rRNA maturation factor gi|183226658|dbj|BAG27174.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956] Length = 157 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 10/149 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E L+ E + KA++ E+SL F + I LN +YRGID+ T+V+ Sbjct: 10 EGKLQPSQERLAEKALAQA--AERLDVPEQAEMSLTFVLNPEIRELNRDYRGIDRATDVI 67 Query: 85 SFPTAFASSDGCSSLML--------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 SF + GD+V++ + + +A L + L +L++HGFLH Sbjct: 68 SFAIEDDDDLANLPAEIRAELPVELGDLVISIDKVTEQALFLNHSADRELGYLLVHGFLH 127 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGIN 165 L GYDH + D M L+ IL+ LG++ Sbjct: 128 LNGYDHEEPADEEKMFTLQEEILDGLGLS 156 >gi|319957260|ref|YP_004168523.1| hypothetical protein Nitsa_1526 [Nitratifractor salsuginis DSM 16511] gi|319419664|gb|ADV46774.1| protein of unknown function UPF0054 [Nitratifractor salsuginis DSM 16511] Length = 142 Score = 99.3 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 59/135 (43%), Gaps = 6/135 (4%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 L E A+ + E+ ++ TD I LN E+R DK T+VLSFP Sbjct: 3 LLENQTDTAIETAHLEPIAKALTDREIEVILTDDATIRELNREHRDKDKATDVLSFPLEG 62 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 LG +V++ + + +A LG E L L IHG LHLLGYDH D Sbjct: 63 DLPGQP----LGSLVISLDHVVQKAGELGHAPEEELALLFIHGLLHLLGYDHET--DRGE 116 Query: 151 MEGLERSILEDLGIN 165 M E ++ G+ Sbjct: 117 MRAKEAELIRRFGLP 131 >gi|222529265|ref|YP_002573147.1| hypothetical protein Athe_1274 [Caldicellulosiruptor bescii DSM 6725] gi|254800021|sp|B9MRS0|RRMF_ANATD RecName: Full=Probable rRNA maturation factor gi|222456112|gb|ACM60374.1| protein of unknown function UPF0054 [Caldicellulosiruptor bescii DSM 6725] Length = 158 Score = 99.3 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 81/158 (51%), Gaps = 12/158 (7%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N D++ + + +++ N I F++E E+S++ D+ I+ LN Y Sbjct: 3 IFIQNQ--QDKVDIDQHISKIIEESIVNTIK--VFLEEENFEISVLIVDNSFIKELNRNY 58 Query: 75 RGIDKPTNVLSFPTAFASSDG--------CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 R ++K T+VLSFP + + LGDIV++ E +A G E + Sbjct: 59 RNVNKETDVLSFPIFEFKNGKLLEDIVIMEDEIPLGDIVISIEKAAQQAKEFGHSLEREI 118 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +L +H LHLLG+DH+++ D VM E IL+ +G+ Sbjct: 119 AYLTVHSVLHLLGFDHIEEDDRKVMREYEEQILQSMGL 156 >gi|317495248|ref|ZP_07953618.1| hypothetical protein HMPREF0432_00220 [Gemella moribillum M424] gi|316914670|gb|EFV36146.1| hypothetical protein HMPREF0432_00220 [Gemella moribillum M424] Length = 157 Score = 99.3 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 10/151 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKE---NIVELSLVFTDSHRIETLNFEYRGIDKP 80 D I L E + L+ + I E+SL F I+ +N +YRG D P Sbjct: 5 DIIDDNNLIEDTTKDMLVELLKYAAKHENINTKITEMSLSFVSKEEIQEINRDYRGKDVP 64 Query: 81 TNVLSFPTAFASSDG-------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 T+V+SF D +GDI++ +I +A F+ + L +HG Sbjct: 65 TDVISFALNDEIEDEVHIIGLEDEFNSIGDIIICVDIAREQAQEYNHSFDREIGFLAVHG 124 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 FLHLLGYDH++++D M + +ILE+ G+ Sbjct: 125 FLHLLGYDHMNEEDEKEMFDKQEAILEEFGL 155 >gi|315604802|ref|ZP_07879861.1| probable metalloprotease [Actinomyces sp. oral taxon 180 str. F0310] gi|315313473|gb|EFU61531.1| probable metalloprotease [Actinomyces sp. oral taxon 180 str. F0310] Length = 149 Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 4/111 (3%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----GCSSLMLGDIVLAY 108 + E++++F + +E L+ + + PT+V+SFP MLGDI + Sbjct: 32 SDAEVNIIFIEPEPMEELHVRWLDLPGPTDVMSFPMDELKPGTADHPTPPGMLGDICICP 91 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 ++ +A G ++ L HG LHLLGYDH D + VM L+R +L Sbjct: 92 QVAARQAAESGHSVAEEMLLLATHGMLHLLGYDHAHDAEREVMFALQRKLL 142 >gi|257126606|ref|YP_003164720.1| hypothetical protein Lebu_1864 [Leptotrichia buccalis C-1013-b] gi|257050545|gb|ACV39729.1| protein of unknown function UPF0054 [Leptotrichia buccalis C-1013-b] Length = 153 Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 4/156 (2%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LD+ I + + + E V +N LSL+ T + +I+ Sbjct: 1 MLDIDITYDIEKIDNFFDEEKIKEFVGYILKDEY---KEEFDKNEYYLSLLITTNEQIQE 57 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N EYR D PT+V+SF + G + MLGDIV++ E ++ +++ G E ++ Sbjct: 58 INCEYRQKDAPTDVISFAYNETENFGAVN-MLGDIVISIERVKEQSSEYGHSDEREFYYV 116 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + HG LHLLGYDH++++D VM E IL Sbjct: 117 LCHGMLHLLGYDHIEEQDKVVMRKREEEILSKFNYK 152 >gi|312196050|ref|YP_004016111.1| hypothetical protein FraEuI1c_2202 [Frankia sp. EuI1c] gi|311227386|gb|ADP80241.1| protein of unknown function UPF0054 [Frankia sp. EuI1c] Length = 188 Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 18/159 (11%) Query: 11 LDLQIAVENA-LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + IA E DE+ L L V + ELS++ ++ + Sbjct: 1 MSVFIANETGESDVDEVTLAGLARFVLDAM----------KVNPLAELSIMIVETAAMTD 50 Query: 70 LNFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 L+ Y G D PT+VL+FP S+D + +LGD+VL E+ +A G Sbjct: 51 LHVRYMGEDGPTDVLAFPQDEAFESSYADSADNDPATLLGDVVLCPEVARKQAVTAGHSA 110 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + L L HG LHLLGYDH + + M L+ +L Sbjct: 111 QRELHLLCTHGILHLLGYDHAEQAEEREMFRLQEDLLTR 149 >gi|296314907|ref|ZP_06864848.1| putative metalloprotease [Neisseria polysaccharea ATCC 43768] gi|296838092|gb|EFH22030.1| putative metalloprotease [Neisseria polysaccharea ATCC 43768] Length = 171 Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 6/141 (4%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 33 ERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGE 88 Query: 93 --SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 D S + GD+V+ +++ EA K E H HL IHG LHL+GYDH++D +A + Sbjct: 89 ILPDQFSDGLYGDLVICPQVVLKEAAEQDKTPEQHFAHLTIHGTLHLMGYDHIEDNEAEI 148 Query: 151 MEGLERSILEDLGINDPYEVD 171 ME E ++ +G +PY+ D Sbjct: 149 MEAEEIRLMLAVGFPNPYQED 169 >gi|253576079|ref|ZP_04853411.1| cytidine deaminase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844422|gb|EES72438.1| cytidine deaminase [Paenibacillus sp. oral taxon 786 str. D14] Length = 165 Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 14/158 (8%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 W +E + + + L G E++L F D I LN +YRGID+P Sbjct: 6 AWSNEQDKMEIGQDLIDLLERVLQIAGQAEGITEGEVALTFVDDEAIHELNRDYRGIDRP 65 Query: 81 TNVLSFPTAFASSDGCS--------------SLMLGDIVLAYEIIEIEANVLGKEFENHL 126 T+VLSF + + + MLGDI+++ E + ++ G E + Sbjct: 66 TDVLSFAMNESLEEEPEIVYELEEDEELDDMTEMLGDIIISVERAKAQSEEYGHSLEREI 125 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L +HGFLHLLGYDH D M G + + L ++G+ Sbjct: 126 GFLFVHGFLHLLGYDHQDAVSEAEMMGKQEAALAEVGL 163 >gi|254991895|ref|ZP_05274085.1| putative metalloprotease [Listeria monocytogenes FSL J2-064] Length = 161 Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 18/168 (10%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + L++ + E DE L E + + Y E ELSL FT + I Sbjct: 1 MTVLEIDLLDETKNLLDEDK--QLVENILQ------FAAEYLKIEQGTELSLTFTTNEGI 52 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCS----------SLMLGDIVLAYEIIEIEANV 117 +N EYR D+ T+V+SF MLGDI+++ E E +A Sbjct: 53 REINREYRDKDQATDVISFALEEMGDGETEIDWGEFDLETPRMLGDIIISTEKAEEQATD 112 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G L L +HG LHLLGYDH++ + +M GL++ +L+ G+ Sbjct: 113 YGHTKARELGFLAVHGLLHLLGYDHMEPDEEKIMFGLQKEVLDAYGLE 160 >gi|295677635|ref|YP_003606159.1| protein of unknown function UPF0054 [Burkholderia sp. CCGE1002] gi|295437478|gb|ADG16648.1| protein of unknown function UPF0054 [Burkholderia sp. CCGE1002] Length = 153 Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 72/150 (48%), Gaps = 13/150 (8%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 W + L L A + + EL++ F D+ TLN YRG D Sbjct: 17 KAWPEHKAL--LPRTTVAGWIKAALFA-------DGELTVRFVDAEEGRTLNRTYRGKDY 67 Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 TNVL+F A + D + GD++L ++E EA GK H HL++HG LH G Sbjct: 68 ATNVLTFAYAESEDD----PVTGDLILCCPVVEKEAAEQGKPLAAHYAHLLVHGTLHAQG 123 Query: 140 YDHVDDKDACVMEGLERSILEDLGINDPYE 169 YDH +++A ME +E IL LG DPY+ Sbjct: 124 YDHEVEEEAEEMEAIETEILARLGFPDPYQ 153 >gi|123169874|sp|Q14NW7|RRMF_SPICI RecName: Full=Probable rRNA maturation factor gi|110004475|emb|CAK98812.1| conserved hypothetical upf0054 protein [Spiroplasma citri] Length = 158 Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 58/145 (40%), Gaps = 9/145 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 I + + L++ +ELSL+ D+ LN +YR D +V+ Sbjct: 14 YIKPYQDDFNAIFQKIKTLLA-----ITEPLELSLIIVDAQEQLELNQKYRHKDYVADVI 68 Query: 85 SFPTAFASSDGCSSLM----LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 +F + L LGDI + YE +A L HG LH+LGY Sbjct: 69 TFALEEENKIDLFELTGLRSLGDIFICYEKALAQAAEYNHSPRREFAFLFTHGMLHILGY 128 Query: 141 DHVDDKDACVMEGLERSILEDLGIN 165 DH D M L+R +L DL IN Sbjct: 129 DHQTPADEEKMFNLQRKVLNDLQIN 153 >gi|148543967|ref|YP_001271337.1| hypothetical protein Lreu_0736 [Lactobacillus reuteri DSM 20016] gi|184153362|ref|YP_001841703.1| hypothetical protein LAR_0707 [Lactobacillus reuteri JCM 1112] gi|194467790|ref|ZP_03073776.1| protein of unknown function UPF0054 [Lactobacillus reuteri 100-23] gi|167016785|sp|A5VJH6|RRMF_LACRD RecName: Full=Probable rRNA maturation factor gi|229890246|sp|B2G6Z1|RRMF_LACRJ RecName: Full=Probable rRNA maturation factor gi|148531001|gb|ABQ83000.1| protein of unknown function UPF0054 [Lactobacillus reuteri DSM 20016] gi|183224706|dbj|BAG25223.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112] gi|194452643|gb|EDX41541.1| protein of unknown function UPF0054 [Lactobacillus reuteri 100-23] Length = 159 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 17/164 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL+I + L + + + + E+SL F ++ I+ L Sbjct: 1 MDLEIFDQTTA-----QLPNEQLEMVRDLLQYAAKELSLSEN--TEMSLTFVNNPEIKKL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS----------SLMLGDIVLAYEIIEIEANVLGK 120 N +YR +D+ T+VLSF A + + LGD+ ++ + + +A LG Sbjct: 54 NAQYRNVDRATDVLSFAAEEAGDETPIIMDPEMAAEIPVNLGDLFISIDKVAEQAKFLGH 113 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + L L +HGFLHL GYDH + D M L+R IL+ G+ Sbjct: 114 SVDRELGFLAVHGFLHLNGYDHEEPADEEKMFKLQREILDGYGL 157 >gi|311113631|ref|YP_003984853.1| metalloprotease [Rothia dentocariosa ATCC 17931] gi|310945125|gb|ADP41419.1| probable metalloprotease [Rothia dentocariosa ATCC 17931] Length = 173 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 66/165 (40%), Gaps = 10/165 (6%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISK------GYFVKENIVELSLVFTDSHR 66 L VE+ L FA + ++S LS+ + Sbjct: 4 LDFHVEDPNEKPGNVTTQLIHDAFASVDTEVLSNLVDYIFAKLFISKDTYLSIAVVGEKQ 63 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL---MLGDIVLAYEIIEIEANVLGKEFE 123 +E ++ E+ + T+V+SFP L MLGDIVL + + G Sbjct: 64 MEKIHLEWMDLPGATDVMSFPMDELVPGTEDELAQGMLGDIVLCPPVAARQGADAGHSTL 123 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED-LGINDP 167 + L L HG LH LGYDH ++ M GL+RS+LE LG P Sbjct: 124 DELCLLTTHGILHCLGYDHGTAQEEAEMFGLQRSLLEGFLGRAAP 168 >gi|238927459|ref|ZP_04659219.1| metal-dependent hydrolase [Selenomonas flueggei ATCC 43531] gi|238884741|gb|EEQ48379.1| metal-dependent hydrolase [Selenomonas flueggei ATCC 43531] Length = 153 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 9/157 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++IA+ D + + +AV + + E+S+ T+ I LN Sbjct: 1 MEIAI--GKEPDTLEVPQEDVDAVRRAVLTVGRLYGALD---AEVSVTLTNDAHIHVLNR 55 Query: 73 EYRGIDKPTNVLSFPTAFASSDG----CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +YRG+D+PT+VLSF + ++LGD+V++ E +A G F L Sbjct: 56 DYRGVDRPTDVLSFALTESEEPEIIDAPCGVVLGDLVISLERAAAQAEEYGHSFLRELSF 115 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L +HG LHLLGYDH+++++ ME +R +++ LGI Sbjct: 116 LTVHGMLHLLGYDHIEEEERLEMEEEQRHVMDALGIA 152 >gi|327382542|gb|AEA54018.1| Probable rRNA maturation factor [Lactobacillus casei LC2W] Length = 120 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 4/117 (3%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----GCSSLMLGDIVLA 107 E+S+ IE +N EYR D+ T+V+SF D + +GD+ + Sbjct: 2 PENTEMSITLVGDDEIERINREYRETDRVTDVISFAIEEGEDDLPLLPGMAKNIGDLFID 61 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + A G FE L + ++HGFLHL GYDH+ +D VM L++ IL G+ Sbjct: 62 PLTVRRHAEEYGHSFERELGYTVVHGFLHLNGYDHIKPEDEAVMIPLQKKILAAYGL 118 >gi|16803505|ref|NP_464990.1| putative metalloprotease [Listeria monocytogenes EGD-e] gi|47095416|ref|ZP_00233026.1| conserved hypothetical protein TIGR00043 [Listeria monocytogenes str. 1/2a F6854] gi|224500515|ref|ZP_03668864.1| putative metalloprotease [Listeria monocytogenes Finland 1988] gi|224501595|ref|ZP_03669902.1| putative metalloprotease [Listeria monocytogenes FSL R2-561] gi|254827753|ref|ZP_05232440.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254829776|ref|ZP_05234431.1| putative metalloprotease [Listeria monocytogenes 10403S] gi|254898369|ref|ZP_05258293.1| putative metalloprotease [Listeria monocytogenes J0161] gi|254912139|ref|ZP_05262151.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254936467|ref|ZP_05268164.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|284801852|ref|YP_003413717.1| putative metalloprotease [Listeria monocytogenes 08-5578] gi|284994994|ref|YP_003416762.1| putative metalloprotease [Listeria monocytogenes 08-5923] gi|26006921|sp|Q8Y747|RRMF_LISMO RecName: Full=Probable rRNA maturation factor gi|16410894|emb|CAC99543.1| lmo1465 [Listeria monocytogenes EGD-e] gi|47016237|gb|EAL07160.1| conserved hypothetical protein TIGR00043 [Listeria monocytogenes str. 1/2a F6854] gi|258600132|gb|EEW13457.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258609059|gb|EEW21667.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|284057414|gb|ADB68355.1| putative metalloprotease [Listeria monocytogenes 08-5578] gi|284060461|gb|ADB71400.1| putative metalloprotease [Listeria monocytogenes 08-5923] gi|293590110|gb|EFF98444.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 161 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 75/168 (44%), Gaps = 18/168 (10%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + L++ + E DE L E + + Y E ELSL FT + I Sbjct: 1 MTVLEIDLLDETKNLLDEDK--QLVENILQ------FAAEYLKIEQGTELSLTFTTNEGI 52 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCS----------SLMLGDIVLAYEIIEIEANV 117 +N EYR D+ T+V+SF MLGDI+++ E E +A Sbjct: 53 REINREYRDKDQATDVISFALEEMGDGETEIDWGEFDLETPRMLGDIIISTEKAEEQAKD 112 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G L L +HG LHLLGYDH++ + VM GL++ +L+ G+ Sbjct: 113 YGHTKARELGFLAVHGLLHLLGYDHMEPDEEKVMFGLQKEVLDAYGLE 160 >gi|319760452|ref|YP_004124390.1| hypothetical protein BVAF_319 [Candidatus Blochmannia vafer str. BVAF] gi|318039166|gb|ADV33716.1| conserved hypothetical protein [Candidatus Blochmannia vafer str. BVAF] Length = 155 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 1/132 (0%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 K I K +F+ +EL++ D + LN+ Y G PTNVLSFP G Sbjct: 22 KKIFQKWIKKIFFLYNKKIELTIRIVDIQEMLYLNWYYAGKKHPTNVLSFPF-KTPLKGI 80 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 S +LGDIV+ +IIE E+ H H+IIHG LHLLGYDH+ +KDA +M +E Sbjct: 81 LSSLLGDIVICKQIIEYESKQYNISSIMHWAHMIIHGSLHLLGYDHILNKDAELMHQMEL 140 Query: 157 SILEDLGINDPY 168 +I++ G ++ Y Sbjct: 141 NIMQKFGYHNYY 152 >gi|34763927|ref|ZP_00144826.1| Hypothetical Metal-Binding Protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886298|gb|EAA23575.1| Hypothetical Metal-Binding Protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 162 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 1/130 (0%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-ASSD 94 + ++ + + LSL+ TD+ I+ +N EYR + PT+V+SF + Sbjct: 29 LENYIKKVLELEEVESDRPLYLSLLLTDNENIQVINREYRDKNAPTDVISFAYHETEDFN 88 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 LGDI+++ E +E +A FE +++ HG LH+LGYDH+++ D +M Sbjct: 89 IGPYDTLGDIIISLERVEEQATEYNHLFEREFYYVLTHGILHILGYDHIEEDDKKLMRER 148 Query: 155 ERSILEDLGI 164 E +IL G Sbjct: 149 EEAILSSFGY 158 >gi|241759364|ref|ZP_04757470.1| conserved hypothetical protein [Neisseria flavescens SK114] gi|241320500|gb|EER56797.1| conserved hypothetical protein [Neisseria flavescens SK114] Length = 171 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 59/178 (33%), Positives = 83/178 (46%), Gaps = 16/178 (8%) Query: 1 MSVKKVNLPRLDLQ-----IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIV 55 M K P L LQ + ENA +L + E F + + + Y Sbjct: 1 MKRAK-QYPFLSLQRQRFHLNFENA--SSAANLPS--ERDFYRWTWSALKNEY----RRA 51 Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEI 113 +SL+ D N +YRG D TNVLSF D S + GD+V+ +++ Sbjct: 52 GISLILLDEEEARDYNRDYRGKDYATNVLSFALNEGEILPDQFSDGLYGDLVICPQVVLK 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY+ D Sbjct: 112 EAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAEIMEAEEIRLMLAAGFPNPYQED 169 >gi|307634994|gb|ADI85044.2| protein of unknown function UPF0054 [Geobacter sulfurreducens KN400] Length = 150 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 2/112 (1%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 ELS+V T I +N +Y G D+PTNV+SF + +LGD++++ + Sbjct: 33 PDSELSVVITGDLGIRRVNRDYLGKDRPTNVISFAMGEGDFGDLNPDVLGDVIISADTAA 92 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVD--DKDACVMEGLERSILEDL 162 EA G F + L L++HG LH+ GYDH + +A ME ER I L Sbjct: 93 REAEEAGIAFWSRLCFLLLHGTLHITGYDHERSGEAEARRMEAKEREIFALL 144 >gi|134093656|ref|YP_001098731.1| hypothetical protein HEAR0379 [Herminiimonas arsenicoxydans] gi|166232645|sp|A4G265|RRMF_HERAR RecName: Full=Probable rRNA maturation factor gi|133737559|emb|CAL60602.1| putative metal-dependent hydrolase [Herminiimonas arsenicoxydans] Length = 156 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 72/165 (43%), Gaps = 14/165 (8%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + +L L + + D I R L A+ +++L F D+ Sbjct: 1 MQQNKLSLSVQYADTRVQD-ILTRPLLRKWVKAALLA-----------PAQITLRFVDAA 48 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS--LMLGDIVLAYEIIEIEANVLGKEFE 123 + LN YRG D TNVL+F + + DI+L ++++ EA K Sbjct: 49 EGQILNRNYRGKDYATNVLTFTYNDDDGSDIADDAVTQADIILCTDVLQREAAEQNKTLI 108 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H HL+IHG LH GYDH D++A ME LE L LG +PY Sbjct: 109 FHAAHLVIHGVLHAQGYDHESDEEAEEMEALEIEFLAALGFPNPY 153 >gi|62901442|sp|Q74AR8|RRMF_GEOSL RecName: Full=Probable rRNA maturation factor Length = 178 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 2/112 (1%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 ELS+V T I +N +Y G D+PTNV+SF + +LGD++++ + Sbjct: 61 PDSELSVVITGDLGIRRVNRDYLGKDRPTNVISFAMGEGDFGDLNPDVLGDVIISADTAA 120 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVD--DKDACVMEGLERSILEDL 162 EA G F + L L++HG LH+ GYDH + +A ME ER I L Sbjct: 121 REAEEAGIAFWSRLCFLLLHGTLHITGYDHERSGEAEARRMEAKEREIFALL 172 >gi|239623718|ref|ZP_04666749.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521749|gb|EEQ61615.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 165 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 27/172 (15%) Query: 11 LDLQIAVENALWGDEIHLR--TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 + + I E ++ L + + A+ Y E++++ TD+ I Sbjct: 1 MTISIEYEAE---KKLDLPYGDIIRDIVLAALD------YEECPYEAEVNVILTDNEAIR 51 Query: 69 TLNFEYRGIDKPTNVLSFPT----------------AFASSDGCSSLMLGDIVLAYEIIE 112 +N EYR ID PT+VLSFP + LMLGDIV++ + +E Sbjct: 52 EINREYREIDSPTDVLSFPMVDYGTPSDFDHVEEAVEDYFNPETGELMLGDIVVSVDKVE 111 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G L L+ H LHL GYDH+++ + ME +R ILE G Sbjct: 112 EQAEKYGHSETRELAFLVAHSMLHLFGYDHMEEGEREQMEDRQRKILETRGY 163 >gi|317122974|ref|YP_004102977.1| hypothetical protein Tmar_2170 [Thermaerobacter marianensis DSM 12885] gi|315592954|gb|ADU52250.1| protein of unknown function UPF0054 [Thermaerobacter marianensis DSM 12885] Length = 173 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 48/149 (32%), Positives = 67/149 (44%), Gaps = 15/149 (10%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 +AV+N D + + + V L++ VE+SL F D I LN Y Sbjct: 14 VAVDNR--QDRVAVPDHWPSLLPAVVERLLAAEGLAV--PVEVSLTFVDDAAIHELNRRY 69 Query: 75 RGIDKPTNVLSFPTAFASSD-----------GCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 RG D PT+VLSFP G L LGD+V++ E +A G + Sbjct: 70 RGKDAPTDVLSFPQLEQEEIAALRDPVPAVLGPDLLPLGDVVISLERAAAQAREYGHSLD 129 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVME 152 + +L+ HG LHLLGYDH D + +M Sbjct: 130 REVGYLLAHGVLHLLGYDHPDAEGERLMH 158 >gi|295110094|emb|CBL24047.1| conserved hypothetical protein TIGR00043 [Ruminococcus obeum A2-162] Length = 164 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 22/169 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +QI E L E + +K ++++ V ++LV TD+ I+ + Sbjct: 1 MTIQIDYEAER-----KLDIDYEKLASKVAAHILETE--HCPYDVCVNLVITDNEEIKRV 53 Query: 71 NFEYRGIDKPTNVLSFPT---------------AFASSDGCSSLMLGDIVLAYEIIEIEA 115 N E+R I PT+VLSFP L+LGD++++ + + +A Sbjct: 54 NTEFRSIGAPTDVLSFPMIPFETPADYSVIEGDDSYFDLDTEELILGDVMISVDKVYAQA 113 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G E L H LHLLGYDH++ +A VME + LEDLGI Sbjct: 114 EEYGHSTEREFSFLFAHSMLHLLGYDHMEPDEAAVMEAKQAKALEDLGI 162 >gi|57239608|ref|YP_180744.1| hypothetical protein Erum8820 [Ehrlichia ruminantium str. Welgevonden] gi|58579597|ref|YP_197809.1| hypothetical protein ERWE_CDS_09330 [Ehrlichia ruminantium str. Welgevonden] gi|62901161|sp|Q5HA01|RRMF_EHRRW RecName: Full=Probable rRNA maturation factor gi|57161687|emb|CAH58617.1| conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] gi|58418223|emb|CAI27427.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] Length = 157 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 8/156 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I V W I + F K V + E +S+V ++ ++ LN+ Sbjct: 2 IEINVYYKKWYSTIKKPKI----FVKNVIKSSLINLNIYEYKPIISIVLANNILLQKLNY 57 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 EYR +KPTNVLSFP + LG+I L+ + + E+ L E+H H++IH Sbjct: 58 EYRNKNKPTNVLSFPYDKLNKKCN----LGEIFLSLDTLIQESIDLNIPIEHHTCHMLIH 113 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 G LH+L Y+H + +ME +E +L+ LGI +PY Sbjct: 114 GLLHILDYNHEEPLMQYIMESIEIKLLDKLGIRNPY 149 >gi|224282932|ref|ZP_03646254.1| putative metalloprotease [Bifidobacterium bifidum NCIMB 41171] gi|310287375|ref|YP_003938633.1| hypothetical protein BBIF_0854 [Bifidobacterium bifidum S17] gi|311064216|ref|YP_003970941.1| hypothetical protein BBPR_0823 [Bifidobacterium bifidum PRL2010] gi|313140091|ref|ZP_07802284.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|309251311|gb|ADO53059.1| conserved hypothetical protein [Bifidobacterium bifidum S17] gi|310866535|gb|ADP35904.1| Conserved hypothetical protein in uncharacterized protein family UPF0054 [Bifidobacterium bifidum PRL2010] gi|313132601|gb|EFR50218.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 181 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP + M LGD+V+ + Sbjct: 36 DLTILFVDPDPIAELHERWMSLEGPTDVMSFPMDELRPGDGKTTMEGVLGDLVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV + M GL+R +L Sbjct: 96 QQAAAAGHSTMQEMMLLTIHGILHLLGYDHVTPEQERQMFGLQRQLL 142 >gi|46907693|ref|YP_014082.1| metalloprotease [Listeria monocytogenes serotype 4b str. F2365] gi|47093470|ref|ZP_00231233.1| conserved hypothetical protein TIGR00043 [Listeria monocytogenes str. 4b H7858] gi|226224066|ref|YP_002758173.1| hypothetical protein Lm4b_01475 [Listeria monocytogenes Clip81459] gi|254824476|ref|ZP_05229477.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|254852090|ref|ZP_05241438.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|254932650|ref|ZP_05266009.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|300765608|ref|ZP_07075587.1| hypothetical protein LMHG_12515 [Listeria monocytogenes FSL N1-017] gi|59799121|sp|Q71ZK5|RRMF_LISMF RecName: Full=Probable rRNA maturation factor gi|259646403|sp|C1KVB2|RRMF_LISMC RecName: Full=Probable rRNA maturation factor gi|46880962|gb|AAT04259.1| conserved hypothetical protein TIGR00043 [Listeria monocytogenes serotype 4b str. F2365] gi|47018146|gb|EAL08916.1| conserved hypothetical protein TIGR00043 [Listeria monocytogenes str. 4b H7858] gi|225876528|emb|CAS05237.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605389|gb|EEW17997.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|293584209|gb|EFF96241.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293593714|gb|EFG01475.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|300513709|gb|EFK40777.1| hypothetical protein LMHG_12515 [Listeria monocytogenes FSL N1-017] gi|328465508|gb|EGF36737.1| metal-binding heat shock protein [Listeria monocytogenes 1816] gi|328474977|gb|EGF45771.1| metal-binding heat shock protein [Listeria monocytogenes 220] gi|332311906|gb|EGJ25001.1| Putative rRNA maturation factor [Listeria monocytogenes str. Scott A] Length = 161 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 18/168 (10%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + L++ + E DE L E + + Y E ELSL FT + I Sbjct: 1 MTVLEIDLLDETKNLLDEDK--QLVENILQ------FAAEYLKIEQGTELSLTFTTNEGI 52 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCS----------SLMLGDIVLAYEIIEIEANV 117 +N EYR D+ T+V+SF MLGDI+++ E E +A Sbjct: 53 REINREYRDKDQATDVISFALEEMGDGETEIDWGEFDLETPRMLGDIIISTEKAEEQAKD 112 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G L L +HG LHLLGYDH++ + +M GL++ +L+ G+ Sbjct: 113 YGHTKARELGFLAVHGLLHLLGYDHMEPDEEKIMFGLQKEVLDAYGLE 160 >gi|116511926|ref|YP_809142.1| putative metalloprotease [Lactococcus lactis subsp. cremoris SK11] gi|123125607|sp|Q02ZA2|RRMF_LACLS RecName: Full=Probable rRNA maturation factor gi|116107580|gb|ABJ72720.1| Predicted metal-dependent hydrolase [Lactococcus lactis subsp. cremoris SK11] Length = 162 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 22/168 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E EI +T + FA + E+S+ F D+ R L Sbjct: 1 MYVELVDETGQVPSEIIEQTKEVLAFAAK--------KLDLKESTEMSVTFVDNARSHEL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG--------------CSSLMLGDIVLAYEIIEIEAN 116 N +YR D+PT+V+S S+ +G++ ++ + +A Sbjct: 53 NLQYRETDRPTDVISLEYKPDESEFFFDEDMELPEELLEEMDPFIGELFISIDKAAEQAA 112 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G E L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 113 DYGHSIEREYGWLAVHGFLHINGYDHYMPEEESEMFALQEEILTAYGL 160 >gi|93005420|ref|YP_579857.1| hypothetical protein Pcryo_0590 [Psychrobacter cryohalolentis K5] gi|122415831|sp|Q1QD80|RRMF_PSYCK RecName: Full=Probable rRNA maturation factor gi|92393098|gb|ABE74373.1| protein of unknown function UPF0054 [Psychrobacter cryohalolentis K5] Length = 155 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG--CSSLMLGDIVLAY 108 +E I L + TD LN E R D TN+LS+P+ ++ +L LG++++ + Sbjct: 34 QEKIKVLDIYITDEVEGRELNLEARQKDYATNILSYPSDLPAAIIGLMPTLPLGELIICH 93 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDP 167 ++ EA KE H+ HL+IHG LHLLG+DH + ME E IL L I +P Sbjct: 94 AVMIREAAEQNKEAVQHISHLLIHGVLHLLGFDHELGQAEQDEMERFEIEILAGLNIPNP 153 Query: 168 YE 169 Y Sbjct: 154 YN 155 >gi|226325256|ref|ZP_03800774.1| hypothetical protein COPCOM_03048 [Coprococcus comes ATCC 27758] gi|225206604|gb|EEG88958.1| hypothetical protein COPCOM_03048 [Coprococcus comes ATCC 27758] Length = 164 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 17/155 (10%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 + L+ E + K ++ Y ++ L+ T + I +N E+RGID+ T+VL Sbjct: 10 ALDLKLPYEELATKVADAVLD--YEKCPYEAQVELLLTMNEEIRQMNLEFRGIDRATDVL 67 Query: 85 SFPTAFAS---------------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 SFP LMLG+IV++ E + +A G E L Sbjct: 68 SFPMTEFPSPADYAYLDTDDSSFDPETGELMLGNIVISKERAKEQAEEYGHSVEREFAFL 127 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 I H LHLLGYDH++D++ VME +R +LE LGI Sbjct: 128 IAHSMLHLLGYDHMEDEERLVMEKKQREVLEMLGI 162 >gi|291456691|ref|ZP_06596081.1| putative metalloprotease [Bifidobacterium breve DSM 20213] gi|291381968|gb|EFE89486.1| putative metalloprotease [Bifidobacterium breve DSM 20213] Length = 183 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP ++M LGDIV+ + Sbjct: 36 DLTIMFVDPDPIAELHMRWMSLEGPTDVMSFPMDELRPGDGKTVMEGVLGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV + M GL+R +L Sbjct: 96 QQAAAAGHSTMQEMLLLTIHGILHLLGYDHVTPEQERQMFGLQRQLL 142 >gi|312622489|ref|YP_004024102.1| hypothetical protein Calkro_1427 [Caldicellulosiruptor kronotskyensis 2002] gi|312202956|gb|ADQ46283.1| protein of unknown function UPF0054 [Caldicellulosiruptor kronotskyensis 2002] Length = 158 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 12/158 (7%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N D++ + + +++ N I F++E E+S+ D+ I+ LN Y Sbjct: 3 IFIQNQ--QDKVDIDQHISKIIEESIVNTIK--VFLEEENFEISVFIVDNSFIKELNRNY 58 Query: 75 RGIDKPTNVLSFPTAFASSDG--------CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 R ++K T+VLSFP + + LGDIV++ E +A G E + Sbjct: 59 RNVNKETDVLSFPIFEFKNGKLLEDIVIMEDEIPLGDIVISIEKAAQQAKEFGHSLEREI 118 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +L +H LHLLG+DH+++ D VM E IL+ +G+ Sbjct: 119 AYLTVHSVLHLLGFDHIEEDDRKVMREYEEQILQSMGL 156 >gi|268315812|ref|YP_003289531.1| hypothetical protein Rmar_0237 [Rhodothermus marinus DSM 4252] gi|262333346|gb|ACY47143.1| protein of unknown function UPF0054 [Rhodothermus marinus DSM 4252] Length = 146 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 8/138 (5%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 R L + + V +++ LSLV TD + LN Y G D T+VLSF Sbjct: 16 PSRRLPNALLRRLVQAVLAGEKARLRY---LSLVLTDHATVRELNRTYLGHDYDTDVLSF 72 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 P + ++ G+I + + G F ++HG LHLLGYD + Sbjct: 73 PLSEEP-----GVVEGEIYVDLDTAAERHAEFGATFTQEACRYVVHGLLHLLGYDDATPE 127 Query: 147 DACVMEGLERSILEDLGI 164 M LE L+ G+ Sbjct: 128 ARAHMHRLEDRYLQAAGL 145 >gi|121634333|ref|YP_974578.1| hypothetical protein NMC0477 [Neisseria meningitidis FAM18] gi|166227285|sp|A1KSE7|RRMF_NEIMF RecName: Full=Probable rRNA maturation factor gi|120866039|emb|CAM09777.1| hypothetical protein NMC0477 [Neisseria meningitidis FAM18] gi|325131788|gb|EGC54489.1| hypothetical protein TIGR00043 [Neisseria meningitidis M6190] gi|325137678|gb|EGC60255.1| hypothetical protein TIGR00043 [Neisseria meningitidis ES14902] Length = 171 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 88 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 148 IMEAEEIRLMLAAGFPNPYQED 169 >gi|23465435|ref|NP_696038.1| putative metalloprotease [Bifidobacterium longum NCC2705] gi|46191169|ref|ZP_00120251.2| COG0319: Predicted metal-dependent hydrolase [Bifidobacterium longum DJO10A] gi|189439458|ref|YP_001954539.1| putative metalloprotease [Bifidobacterium longum DJO10A] gi|227545911|ref|ZP_03975960.1| metalloprotease [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239622041|ref|ZP_04665072.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454042|ref|YP_003661185.1| hypothetical protein BLJ_0890 [Bifidobacterium longum subsp. longum JDM301] gi|312132866|ref|YP_004000205.1| metal-dependent hydrolase [Bifidobacterium longum subsp. longum BBMN68] gi|317482194|ref|ZP_07941216.1| hypothetical protein HMPREF0177_00609 [Bifidobacterium sp. 12_1_47BFAA] gi|322688981|ref|YP_004208715.1| hypothetical protein BLIF_0794 [Bifidobacterium longum subsp. infantis 157F] gi|322690950|ref|YP_004220520.1| hypothetical protein BLLJ_0760 [Bifidobacterium longum subsp. longum JCM 1217] gi|29428213|sp|Q8G5Z0|RRMF_BIFLO RecName: Full=Probable rRNA maturation factor gi|238692063|sp|B3DSC2|RRMF_BIFLD RecName: Full=Probable rRNA maturation factor gi|23326086|gb|AAN24674.1| conserved hypothetical protein with duf0054 [Bifidobacterium longum NCC2705] gi|189427893|gb|ACD98041.1| Putative metal-dependent hydrolase [Bifidobacterium longum DJO10A] gi|227213545|gb|EEI81394.1| metalloprotease [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515232|gb|EEQ55099.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516986|emb|CBK70602.1| conserved hypothetical protein TIGR00043 [Bifidobacterium longum subsp. longum F8] gi|296183473|gb|ADH00355.1| protein of unknown function UPF0054 [Bifidobacterium longum subsp. longum JDM301] gi|311773835|gb|ADQ03323.1| Putative metal-dependent hydrolase [Bifidobacterium longum subsp. longum BBMN68] gi|316916332|gb|EFV37732.1| hypothetical protein HMPREF0177_00609 [Bifidobacterium sp. 12_1_47BFAA] gi|320455806|dbj|BAJ66428.1| conserved hypothetical protein [Bifidobacterium longum subsp. longum JCM 1217] gi|320460317|dbj|BAJ70937.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 182 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP ++M LGDIV+ + Sbjct: 36 DLTIMFVDPDPIAELHMRWMNLEGPTDVMSFPMDELRPGDGKTVMEGVLGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV + M GL+R +L Sbjct: 96 QQAAAAGHSTMQEMLLLTIHGILHLLGYDHVTPEQERQMFGLQRQLL 142 >gi|332686716|ref|YP_004456490.1| metal-dependent hydrolase [Melissococcus plutonius ATCC 35311] gi|332370725|dbj|BAK21681.1| metal-dependent hydrolase [Melissococcus plutonius ATCC 35311] Length = 159 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 21/167 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNL-ISKGYFVKENIVELSLVFTDSHRIET 69 +D+ E E F K L S + + E+S+ FT + +I+ Sbjct: 1 MDITFIDETN---------QFSENYFTKIKELLQFSADFLKLPDTTEMSVTFTTNEKIQQ 51 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCS-----------SLMLGDIVLAYEIIEIEANVL 118 +N ++RG + PT+V+SF D LGDI+++ E E +A Sbjct: 52 INQKFRGKNVPTDVISFALEDEGEDEFPIILDEMLTSLPPKNLGDIIISIEKAEEQAQDY 111 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G FE L L +HGFLHL GYDH++++D M L+R IL+D G+ Sbjct: 112 GHSFERELGFLAVHGFLHLNGYDHMNEEDEKEMFDLQRKILDDYGLK 158 >gi|331001780|ref|ZP_08325302.1| hypothetical protein HMPREF0491_00164 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412754|gb|EGG92137.1| hypothetical protein HMPREF0491_00164 [Lachnospiraceae oral taxon 107 str. F0167] Length = 164 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 78/170 (45%), Gaps = 22/170 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I+ E+ I L E + K V + + E+S+ D I + Sbjct: 1 MTIEISYESK-----IKLDIPYEDIINKMVVASLD--FEDCPYEAEVSVTIVDDDEIRRI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFAS---------------SDGCSSLMLGDIVLAYEIIEIEA 115 N EYRGIDK T+VLSFP + L+LGDI+L+ E I +A Sbjct: 54 NNEYRGIDKSTDVLSFPFNEFDIPGNFDNVEENVDAFNPESGELLLGDIILSTEHIIEQA 113 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G L L++H LHL+GYDH+ D + ME +R ILE GI+ Sbjct: 114 REYGHSETRELAFLVVHSMLHLMGYDHMIDDERKDMEDRQRKILEFEGIS 163 >gi|292669777|ref|ZP_06603203.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292648574|gb|EFF66546.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 153 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 11/158 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++++I +++ + +AV + G E+S+ TD + L Sbjct: 1 MEIEI----RREPEDLPVPDSDIAAVRRAVETV---GRLYGAEDAEVSVTLTDDAHVHVL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG----CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 N EYR +D+PT+VLSF A + ++LGD+V++ E +A G L Sbjct: 54 NREYRNVDRPTDVLSFALAESEEPEIIGADGGMVLGDLVISLERTAAQAEEYGHSMLREL 113 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L +HG LHLLGYDH+++++ ME +R ++E+LGI Sbjct: 114 SFLTVHGMLHLLGYDHMEEEERLEMEEEQRHVMEELGI 151 >gi|227519870|ref|ZP_03949919.1| metalloprotease [Enterococcus faecalis TX0104] gi|229545167|ref|ZP_04433892.1| metalloprotease [Enterococcus faecalis TX1322] gi|229549416|ref|ZP_04438141.1| metalloprotease [Enterococcus faecalis ATCC 29200] gi|255972120|ref|ZP_05422706.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255975187|ref|ZP_05425773.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256617031|ref|ZP_05473877.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256763105|ref|ZP_05503685.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256853773|ref|ZP_05559138.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256956689|ref|ZP_05560860.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256961294|ref|ZP_05565465.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|257082010|ref|ZP_05576371.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|257084561|ref|ZP_05578922.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|257087443|ref|ZP_05581804.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257416650|ref|ZP_05593644.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|257419866|ref|ZP_05596860.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257421946|ref|ZP_05598936.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|293383578|ref|ZP_06629488.1| putative metalloprotease [Enterococcus faecalis R712] gi|293387309|ref|ZP_06631865.1| putative metalloprotease [Enterococcus faecalis S613] gi|300860151|ref|ZP_07106238.1| translation metalloprotein YbeY [Enterococcus faecalis TUSoD Ef11] gi|307277154|ref|ZP_07558258.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX2134] gi|307285806|ref|ZP_07565940.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0860] gi|307287709|ref|ZP_07567752.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0109] gi|307290536|ref|ZP_07570448.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0411] gi|312906128|ref|ZP_07765140.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis DAPTO 512] gi|312909474|ref|ZP_07768329.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis DAPTO 516] gi|312953491|ref|ZP_07772331.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0102] gi|227072664|gb|EEI10627.1| metalloprotease [Enterococcus faecalis TX0104] gi|229305653|gb|EEN71649.1| metalloprotease [Enterococcus faecalis ATCC 29200] gi|229309712|gb|EEN75699.1| metalloprotease [Enterococcus faecalis TX1322] gi|255963138|gb|EET95614.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255968059|gb|EET98681.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256596558|gb|EEU15734.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256684356|gb|EEU24051.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256710716|gb|EEU25759.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256947185|gb|EEU63817.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256951790|gb|EEU68422.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256990040|gb|EEU77342.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|256992591|gb|EEU79893.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256995473|gb|EEU82775.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257158478|gb|EEU88438.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] gi|257161694|gb|EEU91654.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257163770|gb|EEU93730.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|291079090|gb|EFE16454.1| putative metalloprotease [Enterococcus faecalis R712] gi|291083207|gb|EFE20170.1| putative metalloprotease [Enterococcus faecalis S613] gi|295113466|emb|CBL32103.1| conserved hypothetical protein TIGR00043 [Enterococcus sp. 7L76] gi|300849190|gb|EFK76940.1| translation metalloprotein YbeY [Enterococcus faecalis TUSoD Ef11] gi|306498391|gb|EFM67896.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0411] gi|306501447|gb|EFM70750.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0109] gi|306502567|gb|EFM71834.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0860] gi|306506084|gb|EFM75250.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX2134] gi|310627774|gb|EFQ11057.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis DAPTO 512] gi|310628700|gb|EFQ11983.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0102] gi|311290147|gb|EFQ68703.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis DAPTO 516] gi|315025401|gb|EFT37333.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX2137] gi|315030209|gb|EFT42141.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX4000] gi|315032905|gb|EFT44837.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0017] gi|315035611|gb|EFT47543.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0027] gi|315144803|gb|EFT88819.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX2141] gi|315150149|gb|EFT94165.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0012] gi|315152158|gb|EFT96174.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0031] gi|315155345|gb|EFT99361.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0043] gi|315159079|gb|EFU03096.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0312] gi|315164808|gb|EFU08825.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX1302] gi|315166394|gb|EFU10411.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX1341] gi|315170290|gb|EFU14307.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX1342] gi|315173675|gb|EFU17692.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX1346] gi|327535697|gb|AEA94531.1| putative metalloprotease [Enterococcus faecalis OG1RF] Length = 159 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 19/166 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+ E E E + + G+ E+S+ FTD+ I+ + Sbjct: 1 MDITFIDETEKVPTEEIKE--IENLLQ------FAAGFLEIAEDTEMSVTFTDNAGIQVI 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS-----------SLMLGDIVLAYEIIEIEANVLG 119 N +YRG D PT+V+SF D LGD++++ E +A G Sbjct: 53 NRDYRGKDMPTDVISFALEDEGEDELPIIFDDEELAELPRNLGDLIISTERAAEQAVEYG 112 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 E + L +HGFLHL GYDH++ +D M GL++ IL+ G+ Sbjct: 113 HTLEREMGFLAVHGFLHLNGYDHMEPEDEKEMFGLQKEILDAYGLK 158 >gi|229916329|ref|YP_002884975.1| hypothetical protein EAT1b_0598 [Exiguobacterium sp. AT1b] gi|259647091|sp|C4L408|RRMF_EXISA RecName: Full=Probable rRNA maturation factor gi|229467758|gb|ACQ69530.1| protein of unknown function UPF0054 [Exiguobacterium sp. AT1b] Length = 158 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 67/160 (41%), Gaps = 13/160 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 +QI + L E + A E ELS+ + + I +N Sbjct: 1 MQIISNDEHELLTTSQIELVESILQHAAQ------LEGVEEPSELSVTYLTNAEIHEVNR 54 Query: 73 EYRGIDKPTNVLSFPTAFASS-------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 E+RG D PT+V+SF D +LGD+V++ E +A G FE Sbjct: 55 EWRGKDAPTDVISFAFDEMGDEEMDFMLDEDEPHLLGDLVISVERCREQAADYGHSFERE 114 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L IHGFLHLLGYDH+ ++ M + +L + Sbjct: 115 LGFLAIHGFLHLLGYDHMTPEEEAEMTARQEEVLTHFELK 154 >gi|71065192|ref|YP_263919.1| hypothetical protein Psyc_0626 [Psychrobacter arcticus 273-4] gi|123649317|sp|Q4FU23|RRMF_PSYA2 RecName: Full=Probable rRNA maturation factor gi|71038177|gb|AAZ18485.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 206 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG--CSSLMLGDIVLAY 108 +E I L + TD LN E R D TN+LS+P+ ++ +L LG++V+ + Sbjct: 85 QEKIKALDIYITDEDEGRELNLEARQKDYATNILSYPSDLPAAIIGLMPTLPLGELVICH 144 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDP 167 ++ EA K H+ HL++HG LHLLG+DH + ME E IL L I +P Sbjct: 145 AVMVREAAEQNKAAVQHINHLLVHGILHLLGFDHELGQAEQDEMERFEIEILAGLNIPNP 204 Query: 168 YE 169 Y Sbjct: 205 YN 206 >gi|300741538|ref|ZP_07071559.1| putative metalloprotease [Rothia dentocariosa M567] gi|300380723|gb|EFJ77285.1| putative metalloprotease [Rothia dentocariosa M567] Length = 173 Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 66/165 (40%), Gaps = 10/165 (6%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISK------GYFVKENIVELSLVFTDSHR 66 L VE+ L FA + ++S LS+ + Sbjct: 4 LDFHVEDPNEKPGNVTTQLVHDAFASVDTEVLSNLVDYIFAKLFISKDTYLSIAVVGEKQ 63 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL---MLGDIVLAYEIIEIEANVLGKEFE 123 +E ++ E+ + T+V+SFP L MLGDIVL + + G Sbjct: 64 MEKIHLEWMDLPGATDVMSFPMDELVPGTEDELAQGMLGDIVLCPSVAARQGADAGHSTL 123 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED-LGINDP 167 + L L HG LH LGYDH ++ M GL+RS+LE LG P Sbjct: 124 DELCLLTTHGILHCLGYDHGTAQEEAEMFGLQRSLLEGFLGRAAP 168 >gi|18311000|ref|NP_562934.1| putative metalloprotease [Clostridium perfringens str. 13] gi|26006929|sp|Q8XIU5|RRMF_CLOPE RecName: Full=Probable rRNA maturation factor gi|18145682|dbj|BAB81724.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 168 Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 21/167 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N ++ + + +S ++ + + E+SLVF D+ I +N E Sbjct: 2 IFIDNR--QNKFDVTEELTTKLEEVISFVLKEEKV--KEDCEVSLVFVDNEEIRGINNET 57 Query: 75 RGIDKPTNVLSFPTAFASSDGC-----------------SSLMLGDIVLAYEIIEIEANV 117 RGIDK T+VLSFP D L+LGDIVL+ E + ++ Sbjct: 58 RGIDKATDVLSFPMIDYPEDKVYKDVYLEHEFDKCYFDGDELILGDIVLSLERTKEQSIE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 FE +L+ H LHLLGYDH+++++ M G E +L L I Sbjct: 118 FNHSFEREACYLVTHSVLHLLGYDHMEEEEKARMRGREEELLGKLNI 164 >gi|323340792|ref|ZP_08081044.1| metalloprotease [Lactobacillus ruminis ATCC 25644] gi|323091915|gb|EFZ34535.1| metalloprotease [Lactobacillus ruminis ATCC 25644] Length = 159 Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 19/165 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL+I + +E L E + + Y E+S+ D+ I + Sbjct: 1 MDLEIYDDTKNVPEE--KIKLIEDILN------FAGSYLKLPENTEMSVTLMDNEHIHEI 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS-----------SLMLGDIVLAYEIIEIEANVLG 119 N +YRG+DKPT+V+SF D +GDI+++ + ++ +A LG Sbjct: 53 NKKYRGVDKPTDVISFAIEEDDPDEVPIILPEDEEFDIPKNIGDIMVSMDKVKEQAEYLG 112 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + L L++HGFLHL GYDH+ ++D M GL+R IL+ G+ Sbjct: 113 HSEDRELGFLVVHGFLHLNGYDHMKEEDEKEMFGLQREILDSYGL 157 >gi|254423789|ref|ZP_05037507.1| conserved hypothetical protein TIGR00043, putative [Synechococcus sp. PCC 7335] gi|196191278|gb|EDX86242.1| conserved hypothetical protein TIGR00043, putative [Synechococcus sp. PCC 7335] Length = 166 Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 8/139 (5%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + F +++L K + E+SL T I+ LN ++R +KPT+VLSF Sbjct: 29 EQYIMWFKTWLADLDPKISPI--GAYEVSLRLTSDAEIQQLNSDFRQQEKPTDVLSFAAL 86 Query: 90 FASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 + LGDI+++ E +A E L L HG LHLLG+DH Sbjct: 87 ETEIPQLQNVYQQQPVYLGDIIVSIETASRQAVENRHSLERELAWLCAHGLLHLLGWDHP 146 Query: 144 DDKDACVMEGLERSILEDL 162 ++ M + +L + Sbjct: 147 NEDRLTQMLDRQALLLNLI 165 >gi|283797897|ref|ZP_06347050.1| putative metalloprotease [Clostridium sp. M62/1] gi|291074362|gb|EFE11726.1| putative metalloprotease [Clostridium sp. M62/1] gi|295091897|emb|CBK78004.1| conserved hypothetical protein TIGR00043 [Clostridium cf. saccharolyticum K10] gi|295115184|emb|CBL36031.1| conserved hypothetical protein TIGR00043 [butyrate-producing bacterium SM4/1] Length = 165 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 23/170 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +QI E +++L E + + V + Y E++++ TD I + Sbjct: 1 MTIQIEYEAE---KKLNLP--YETIIREVVLAALD--YEACPYEAEVNVLLTDDEEIHRI 53 Query: 71 NFEYRGIDKPTNVLSFPT----------------AFASSDGCSSLMLGDIVLAYEIIEIE 114 N E+RGID+ T+VLSFP + L+LGDIV++ + +E + Sbjct: 54 NREFRGIDRATDVLSFPMADYEQPAEFEKLEERPEDYFNPETGELLLGDIVISVDKVEEQ 113 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 A G L L H LHL GYDH+++++ VME + +IL G Sbjct: 114 AEKYGHSEARELAFLTAHSMLHLFGYDHMEEEERLVMEKKQEAILSLKGY 163 >gi|118580450|ref|YP_901700.1| hypothetical protein Ppro_2034 [Pelobacter propionicus DSM 2379] gi|118503160|gb|ABK99642.1| protein of unknown function UPF0054 [Pelobacter propionicus DSM 2379] Length = 127 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 40/110 (36%), Positives = 55/110 (50%), Gaps = 2/110 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ELS+ I +N +Y D+PTNV+SF SL LGD+V++ + EA Sbjct: 8 ELSISIVGDRAIRRINRDYLNRDRPTNVISFSLQEGECGAIPSLALGDVVISADTALREA 67 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVD--DKDACVMEGLERSILEDLG 163 G EF L L++HG LHL GYDH +++A ME E + L Sbjct: 68 EEGGMEFFERLCFLLLHGTLHLCGYDHERSGEEEAARMEAREVELFSVLK 117 >gi|58617651|ref|YP_196850.1| hypothetical protein ERGA_CDS_09240 [Ehrlichia ruminantium str. Gardel] gi|62901147|sp|Q5FGP9|RRMF_EHRRG RecName: Full=Probable rRNA maturation factor gi|58417263|emb|CAI28376.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel] Length = 157 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 8/156 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I V W I + F K V + E +S+V ++ ++ LN+ Sbjct: 2 IEINVYYKKWYSTIKKPKI----FVKNVIKSSLINLNIYEYKPIISIVLANNILLQKLNY 57 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 EYR +KPTNVLSFP + LG+I L+ + + E+ L E+H H++IH Sbjct: 58 EYRNKNKPTNVLSFPYDKLNKKCN----LGEIFLSLDTLIEESIDLNIPIEHHTCHMLIH 113 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 G LH+L Y+H + +ME +E +L+ LGI +PY Sbjct: 114 GLLHILDYNHEEPLMQYIMESIEIKLLDKLGIRNPY 149 >gi|168204743|ref|ZP_02630748.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens E str. JGS1987] gi|170663561|gb|EDT16244.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens E str. JGS1987] Length = 168 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 21/167 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N ++ + + +S ++ + + E+SLVF D+ I +N E Sbjct: 2 IFIDNR--QNKFDVTEELTKKLEEVISFVLKEEKV--KEDCEVSLVFVDNEEIRGINSET 57 Query: 75 RGIDKPTNVLSFPTAFASSDGC-----------------SSLMLGDIVLAYEIIEIEANV 117 RGID+ T+VLSFP D L+LGDIVL+ E + ++ Sbjct: 58 RGIDRATDVLSFPMIDYPEDKVYKDVYLEHEFDKCYFDGDELILGDIVLSLERTKEQSIE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 FE +L+ H LHLLGYDH+++++ M G E +L L I Sbjct: 118 FNHSFEREACYLVTHSVLHLLGYDHMEEEEKARMRGREEELLGKLNI 164 >gi|260662172|ref|ZP_05863068.1| metal-dependent hydrolase [Lactobacillus fermentum 28-3-CHN] gi|260553555|gb|EEX26447.1| metal-dependent hydrolase [Lactobacillus fermentum 28-3-CHN] Length = 157 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 14/145 (9%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L E V A+A L E+SL F + I LN +YRGID+ T+V+SF Sbjct: 18 ERLAEKVLAQAAERL------DVPEQAEMSLTFVLNPEIRELNRDYRGIDRATDVISFAI 71 Query: 89 AFASSDGCSSLML--------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 + GD+V++ + + +A L + L +L++HGFLHL GY Sbjct: 72 EDDDDLANLPAEIRAELPVELGDLVISIDKVTEQALFLNHSADRELGYLLVHGFLHLNGY 131 Query: 141 DHVDDKDACVMEGLERSILEDLGIN 165 DH + D M L+ IL+ LG++ Sbjct: 132 DHEEPADEEKMFTLQEEILDGLGLS 156 >gi|251781920|ref|YP_002996222.1| putative metalloprotease [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390549|dbj|BAH81008.1| hypothetical protein SDEG_0506 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 182 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 26/176 (14%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + + + +++ E EI + + L + E+S+ F + Sbjct: 13 LTINLMYIEMIDETGQVSQEI---------MEQTIDLLNFAAQKTGKEEKEMSVTFVTNA 63 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSD-----------------GCSSLMLGDIVLAY 108 R LN EYR D+PT+V+S + +G++ ++ Sbjct: 64 RSHELNLEYRDTDRPTDVISLEYKPETPILFSQDDLAADPSLAEMMAEFDAYIGELFISI 123 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + +A G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 124 DKAREQAEDYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEILTAYGL 179 >gi|256963579|ref|ZP_05567750.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257079644|ref|ZP_05574005.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|294780924|ref|ZP_06746278.1| metalloprotein, YbeY family [Enterococcus faecalis PC1.1] gi|307270831|ref|ZP_07552119.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX4248] gi|307271518|ref|ZP_07552790.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0855] gi|312899841|ref|ZP_07759160.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0470] gi|256954075|gb|EEU70707.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256987674|gb|EEU74976.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|294452050|gb|EFG20498.1| metalloprotein, YbeY family [Enterococcus faecalis PC1.1] gi|306511790|gb|EFM80788.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0855] gi|306512832|gb|EFM81476.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX4248] gi|311293091|gb|EFQ71647.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0470] Length = 159 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 19/166 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+ E E E + + G+ E+S+ FTD+ I+ + Sbjct: 1 MDITFIDETEKVPTEEIKE--IENLLQ------FAAGFLEIAEDTEMSVTFTDNAGIQVI 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS-----------SLMLGDIVLAYEIIEIEANVLG 119 N +YRG D PT+V+SF D LGD++++ E +A G Sbjct: 53 NRDYRGKDMPTDVISFALEDEGEDELPIIFDDEELAELPRNLGDLIISTERAAEQAFEYG 112 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 E + L +HGFLHL GYDH++ +D M GL++ IL+ G+ Sbjct: 113 HTLEREMGFLAVHGFLHLNGYDHMEPEDEKEMFGLQKEILDAYGLK 158 >gi|213692454|ref|YP_002323040.1| protein of unknown function UPF0054 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254800568|sp|B7GS82|RRMF_BIFLI RecName: Full=Probable rRNA maturation factor gi|213523915|gb|ACJ52662.1| protein of unknown function UPF0054 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458599|dbj|BAJ69220.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 182 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIE 112 +L+++F D + I L+ + ++ PT+V+SFP ++M LGDIV+ + Sbjct: 36 DLTIMFVDPNPIAELHMRWMNLEGPTDVMSFPMDELRPGDGKTVMEGVLGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV + M GL+R +L Sbjct: 96 QQAAAAGHSTMQEMLLLTIHGILHLLGYDHVTPEQERQMFGLQRQLL 142 >gi|302380695|ref|ZP_07269160.1| translation metalloprotein YbeY [Finegoldia magna ACS-171-V-Col3] gi|303233630|ref|ZP_07320284.1| translation metalloprotein YbeY [Finegoldia magna BVS033A4] gi|302311638|gb|EFK93654.1| translation metalloprotein YbeY [Finegoldia magna ACS-171-V-Col3] gi|302495064|gb|EFL54816.1| translation metalloprotein YbeY [Finegoldia magna BVS033A4] Length = 153 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 78/157 (49%), Gaps = 7/157 (4%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 + ++ + ++ + K++ + + + ++ E+SL F I LN +Y Sbjct: 1 MIIQTSNRQEDFQIDDELTSDIEKSIRICLLQE--LNDDNYEISLSFVSEAEIRKLNRDY 58 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 R D T+VLSFP + + +LGDI++ + +A + +V+L++H Sbjct: 59 RDKDSVTDVLSFPLDDDFAIQTN--LLGDIIICCKRAIEQAKEYNHSIKREIVYLVVHSM 116 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HLLGYDH+D+ D +M E+ L+++GI Y+ + Sbjct: 117 FHLLGYDHIDESDRIIMRNKEKLALKEIGI---YKDE 150 >gi|191638507|ref|YP_001987673.1| Putative metalloprotease LSEI_1518 [Lactobacillus casei BL23] gi|238693043|sp|B3WEL4|RRMF_LACCB RecName: Full=Probable rRNA maturation factor gi|190712809|emb|CAQ66815.1| Putative metalloprotease LSEI_1518 [Lactobacillus casei BL23] gi|327385739|gb|AEA57213.1| Probable rRNA maturation factor [Lactobacillus casei BD-II] Length = 152 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----GCSS 98 E+S+ IE +N EYR D+ T+V+SF D + Sbjct: 25 AFCGKQLKLPENTEMSITLVGDDEIERINREYRETDRVTDVISFAIEEGEDDLPLLPGMA 84 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +GD+ + + A G FE L + ++HGFLHL GYDH+ +D VM L++ I Sbjct: 85 KNIGDLFIDPLTVRRHAEEYGHSFERELGYTVVHGFLHLNGYDHIKPEDEAVMIPLQKKI 144 Query: 159 LEDLGI 164 L G+ Sbjct: 145 LAAYGL 150 >gi|298346301|ref|YP_003718988.1| metalloprotease [Mobiluncus curtisii ATCC 43063] gi|304389934|ref|ZP_07371891.1| probable metalloprotease [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315654890|ref|ZP_07907795.1| metalloprotease [Mobiluncus curtisii ATCC 51333] gi|315657186|ref|ZP_07910070.1| metalloprotease [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236362|gb|ADI67494.1| metalloprotease [Mobiluncus curtisii ATCC 43063] gi|304326827|gb|EFL94068.1| probable metalloprotease [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315490851|gb|EFU80471.1| metalloprotease [Mobiluncus curtisii ATCC 51333] gi|315492289|gb|EFU81896.1| metalloprotease [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 150 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 14/156 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I E W L F VS + + Y E++++F D + L Sbjct: 1 MSVEINNET-AW-------ELEMSEFVDLVSYCLEQLYVSP--AAEVNIMFVDIKTMTDL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL----MLGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ + PT+VLSFP + +LGDIVL ++ +A G + Sbjct: 51 HVKWMDLPGPTDVLSFPMDELTPGREGVPSAAGVLGDIVLCPDVAAEQARDAGHAPIEEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L +HG LHLLG+DH + ++ M L+R +L + Sbjct: 111 LLLTVHGLLHLLGFDHAEPEEEKTMFTLQRKLLLNF 146 >gi|238924118|ref|YP_002937634.1| hypothetical protein EUBREC_1756 [Eubacterium rectale ATCC 33656] gi|259646480|sp|C4ZA59|RRMF_EUBR3 RecName: Full=Probable rRNA maturation factor gi|238875793|gb|ACR75500.1| hypothetical protein EUBREC_1756 [Eubacterium rectale ATCC 33656] Length = 165 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 50/149 (33%), Positives = 72/149 (48%), Gaps = 18/149 (12%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--- 88 E V VS + F E++L TD+ I +N EYR ID+PT+VLSFP Sbjct: 17 YEKVAEAVVSASLEHENF--PYEAEVNLTLTDNEGIHAINKEYRQIDRPTDVLSFPMLSY 74 Query: 89 -------------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 + +MLGDI+++ + ++ +A G + LI H L Sbjct: 75 ETPGDFSFLSDENEDDFNPDTGEVMLGDIIISVDKVKEQAVEYGHSEKREFAFLITHSML 134 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGI 164 HL GYDH++ +A VME +R IL+ LGI Sbjct: 135 HLFGYDHMEADEAAVMEEHQRKILDALGI 163 >gi|307330993|ref|ZP_07610124.1| protein of unknown function UPF0054 [Streptomyces violaceusniger Tu 4113] gi|306883379|gb|EFN14434.1| protein of unknown function UPF0054 [Streptomyces violaceusniger Tu 4113] Length = 165 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 17/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ + DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MAIDVNNESGIDIDERAVLDVARYALARMRIHPLS----------ELSVIVVDADAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-----GCSSLMLGDIVLAYEIIEIEANV--LGKEFE 123 + ++ + PT+V+SFP +LGDIVL E+ + + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEVAKKQGEEAPTEHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L L +HG LHLLGYDH + + M GL+ +I Sbjct: 111 EELHLLTVHGVLHLLGYDHEEADERAEMFGLQAAI 145 >gi|302386448|ref|YP_003822270.1| protein of unknown function UPF0054 [Clostridium saccharolyticum WM1] gi|302197076|gb|ADL04647.1| protein of unknown function UPF0054 [Clostridium saccharolyticum WM1] Length = 165 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 23/170 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I E E L E + + V + Y E++++ T + I + Sbjct: 1 MTINIEYEA-----EQKLDIPYEDIIKRVVEESLD--YENCPYEAEVNVLITGNEEIRQI 53 Query: 71 NFEYRGIDKPTNVLSFPT----------------AFASSDGCSSLMLGDIVLAYEIIEIE 114 N EYR +D PT+VLSFP L+LGDIV++ +E + Sbjct: 54 NREYRDMDTPTDVLSFPMIEYECPSEFEHLEETADDCFHPETGELLLGDIVISVNKVEEQ 113 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 A G L L+ H LHL GYDH+++ + +ME + IL G Sbjct: 114 AEKYGHSQTRELAFLVAHSMLHLCGYDHMEEDEREIMEKKQEEILSRGGY 163 >gi|218189024|gb|EEC71451.1| hypothetical protein OsI_03674 [Oryza sativa Indica Group] Length = 593 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 2/111 (1%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 + VE+S++ + + I+ LN E+RG D +LS + + LMLGDIV++ E Sbjct: 169 DKVEVSVLLCNDNFIQNLNKEWRGEDSCIEMLSM-SQYIPDLDVPILMLGDIVISVETAA 227 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD-ACVMEGLERSILEDL 162 +A G + + L + G L LLG+DH + A ME E+ IL+ L Sbjct: 228 RQAEERGHTLLDEVRILAVRGILRLLGFDHQTSDESAVEMEKEEQLILKSL 278 >gi|283769579|ref|ZP_06342475.1| metalloprotein, YbeY/ UPF0054 family [Bulleidia extructa W1219] gi|283103847|gb|EFC05233.1| metalloprotein, YbeY/ UPF0054 family [Bulleidia extructa W1219] Length = 147 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 4/142 (2%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 + + + + E E+S+ F S I +N +YRGID+PT+V+ Sbjct: 8 RTNFPAKKYESIYRKIGKKAEAVLQLDEKK-EISVTFVRSRTIHRINRDYRGIDRPTDVI 66 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SF + + LGD+ + + +A G + L HG LH LGYDH + Sbjct: 67 SFAIQDGGEEI-ETHDLGDLFINVDYAVRQAKEYGHSEKREFCFLFAHGLLHCLGYDHRN 125 Query: 145 DKDACVMEGLERSILEDLGIND 166 K+ M L+ +LE GI D Sbjct: 126 PKEEKKMIALQNQLLE--GIAD 145 >gi|326203510|ref|ZP_08193374.1| protein of unknown function UPF0054 [Clostridium papyrosolvens DSM 2782] gi|325986330|gb|EGD47162.1| protein of unknown function UPF0054 [Clostridium papyrosolvens DSM 2782] Length = 161 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 15/162 (9%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I +EN I + E + K + + + E+S++ D + I +N E+ Sbjct: 2 IIIENGQAKVIIDKK--IENLIEKTIKMCMKSEQL--DKDYEVSVLIVDDNEIRDINREH 57 Query: 75 RGIDKPTNVLSFPT-----------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 R IDK T+VLSFP L+LGDI+++ E + +A G F+ Sbjct: 58 RDIDKSTDVLSFPLVDFKDGKLISDEGDYDLEMGELILGDIIISAETAQRQAEAYGHSFD 117 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + L H HLLGYDH++ + +M + IL+++G+ Sbjct: 118 REMAFLTAHSCFHLLGYDHMEKNEEEIMFKKQEDILKEMGLP 159 >gi|69247283|ref|ZP_00604284.1| Protein of unknown function UPF0054 [Enterococcus faecium DO] gi|257879928|ref|ZP_05659581.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257890443|ref|ZP_05670096.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|257893049|ref|ZP_05672702.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|258616605|ref|ZP_05714375.1| putative metalloprotease [Enterococcus faecium DO] gi|260559562|ref|ZP_05831742.1| conserved hypothetical protein [Enterococcus faecium C68] gi|261208626|ref|ZP_05923063.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289566735|ref|ZP_06447149.1| metalloprotease [Enterococcus faecium D344SRF] gi|293556348|ref|ZP_06674929.1| conserved hypothetical protein [Enterococcus faecium E1039] gi|293559426|ref|ZP_06675965.1| conserved hypothetical protein [Enterococcus faecium E1162] gi|294616316|ref|ZP_06696109.1| hypothetical protein EfmE1636_2374 [Enterococcus faecium E1636] gi|294618706|ref|ZP_06698239.1| conserved hypothetical protein [Enterococcus faecium E1679] gi|314939542|ref|ZP_07846770.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133a04] gi|314942703|ref|ZP_07849529.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133C] gi|314948959|ref|ZP_07852325.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0082] gi|314953306|ref|ZP_07856234.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133A] gi|314993386|ref|ZP_07858751.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133B] gi|314995736|ref|ZP_07860825.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133a01] gi|68194905|gb|EAN09375.1| Protein of unknown function UPF0054 [Enterococcus faecium DO] gi|257814156|gb|EEV42914.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257826803|gb|EEV53429.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|257829428|gb|EEV56035.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|260074230|gb|EEW62552.1| conserved hypothetical protein [Enterococcus faecium C68] gi|260077128|gb|EEW64848.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289161456|gb|EFD09342.1| metalloprotease [Enterococcus faecium D344SRF] gi|291590830|gb|EFF22546.1| hypothetical protein EfmE1636_2374 [Enterococcus faecium E1636] gi|291595049|gb|EFF26393.1| conserved hypothetical protein [Enterococcus faecium E1679] gi|291601415|gb|EFF31686.1| conserved hypothetical protein [Enterococcus faecium E1039] gi|291606640|gb|EFF36035.1| conserved hypothetical protein [Enterococcus faecium E1162] gi|313590008|gb|EFR68853.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133a01] gi|313592051|gb|EFR70896.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133B] gi|313594649|gb|EFR73494.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133A] gi|313598568|gb|EFR77413.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133C] gi|313641178|gb|EFS05758.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133a04] gi|313644618|gb|EFS09198.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0082] Length = 158 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 10/132 (7%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------ 97 + Y E+S+ F D+ I+ +N +YRG D PT+V+SF D Sbjct: 26 FAASYLKLPEETEMSVTFMDNAAIQVINRDYRGKDAPTDVISFALEEEGEDEIPVIFEDG 85 Query: 98 ----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 +LGDI+++ E +A G ++ L L +HGFLH+ GYDH+ +D M G Sbjct: 86 ENPLPRVLGDIMISIERAAEQAEAYGHSYDRELGFLAVHGFLHINGYDHMTPEDEKEMFG 145 Query: 154 LERSILEDLGIN 165 L++ IL+ G+ Sbjct: 146 LQKEILDAYGLK 157 >gi|257884086|ref|ZP_05663739.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] gi|257819924|gb|EEV47072.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] Length = 158 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 10/132 (7%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------ 97 + Y E+S+ F D+ I+ +N +YRG D PT+V+SF D Sbjct: 26 FAASYLKLPEETEMSVTFMDNATIQVINRDYRGKDAPTDVISFALEEEGEDEIPVIFEDG 85 Query: 98 ----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 +LGDI+++ E +A G ++ L L +HGFLH+ GYDH+ +D M G Sbjct: 86 ENPLPRVLGDIMISIERAAEQAEAYGHSYDRELGFLAVHGFLHINGYDHMTPEDEKEMFG 145 Query: 154 LERSILEDLGIN 165 L++ IL+ G+ Sbjct: 146 LQKEILDAYGLK 157 >gi|325143901|gb|EGC66213.1| hypothetical protein TIGR00043 [Neisseria meningitidis M01-240013] gi|325206610|gb|ADZ02063.1| conserved hypothetical protein TIGR00043 [Neisseria meningitidis M04-240196] Length = 171 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 88 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGTLHLMGYDHIEDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 148 IMEAEEIRLMLAAGFPNPYQED 169 >gi|261393091|emb|CAX50688.1| conserved hypothetical protein [Neisseria meningitidis 8013] gi|325202673|gb|ADY98127.1| conserved hypothetical protein TIGR00043 [Neisseria meningitidis M01-240149] gi|325203629|gb|ADY99082.1| conserved hypothetical protein TIGR00043 [Neisseria meningitidis M01-240355] gi|325207581|gb|ADZ03033.1| conserved hypothetical protein TIGR00043 [Neisseria meningitidis NZ-05/33] Length = 171 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 6/141 (4%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 33 ERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGE 88 Query: 93 SDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 C + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A + Sbjct: 89 ILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAEI 148 Query: 151 MEGLERSILEDLGINDPYEVD 171 ME E ++ G +PY+ D Sbjct: 149 MEAEEIRLMLAAGFPNPYQED 169 >gi|169343547|ref|ZP_02864546.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens C str. JGS1495] gi|169298107|gb|EDS80197.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens C str. JGS1495] Length = 168 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 21/167 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N ++ + + +S ++ + + E+SLVF D+ I +N E Sbjct: 2 IFIDNR--QNKFDVTEELTKKLEEVISFVLKEEKV--KEDCEVSLVFVDNEEIRGINNET 57 Query: 75 RGIDKPTNVLSFPTAFASSDGC-----------------SSLMLGDIVLAYEIIEIEANV 117 RGID+ T+VLSFP D L+LGDIVL+ E + ++ Sbjct: 58 RGIDRATDVLSFPMIDYPEDKVYKDVYLEHEFDKCYFDGDELILGDIVLSLERTKEQSIE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 FE +L+ H LHLLGYDH+++++ M G E +L L I Sbjct: 118 FNHSFEREACYLVTHSVLHLLGYDHMEEEEKARMRGREEELLGKLNI 164 >gi|294790830|ref|ZP_06755988.1| putative metalloprotease [Scardovia inopinata F0304] gi|294458727|gb|EFG27080.1| putative metalloprotease [Scardovia inopinata F0304] Length = 174 Score = 98.2 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYE 109 +LS+ F D + L+ + G++ PT+V+SFP D +LGDI+L + Sbjct: 33 PQSDLSIAFIDPQPMAELHVRWMGLEGPTDVMSFPMDQLRPGDEDNRPEGLLGDIILCPQ 92 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + ++A G ++ L IHG LHLLGYDH + M L+R +L Sbjct: 93 VASMQAAAAGHSTIEEMMLLTIHGVLHLLGYDHKKPDEEKRMFALQRQLL 142 >gi|160939164|ref|ZP_02086515.1| hypothetical protein CLOBOL_04058 [Clostridium bolteae ATCC BAA-613] gi|158438127|gb|EDP15887.1| hypothetical protein CLOBOL_04058 [Clostridium bolteae ATCC BAA-613] Length = 165 Score = 98.2 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 23/170 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I E D + R + E A+ Y E++++ TD+ I+ + Sbjct: 1 MTISIEYEAEKVLD-LPYREIIEDTVLAALD------YEGCPYEAEVNVILTDNDAIQEI 53 Query: 71 NFEYRGIDKPTNVLSFPT----------------AFASSDGCSSLMLGDIVLAYEIIEIE 114 N E+R ID PT+VLSFP + LMLGDIV++ + +E + Sbjct: 54 NREHRQIDAPTDVLSFPMVDYESPSDFDHVEEAVEDYFNPETGELMLGDIVISVDKVEEQ 113 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 A G L L H LHL GYDH++D + VME ++ ILE G Sbjct: 114 AEKYGHSQTRELAFLTAHSMLHLFGYDHMEDGERLVMEEKQKEILETRGY 163 >gi|289434747|ref|YP_003464619.1| hypothetical protein lse_1382 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170991|emb|CBH27533.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313633222|gb|EFS00094.1| putative metalloprotease [Listeria seeligeri FSL N1-067] gi|313637811|gb|EFS03155.1| putative metalloprotease [Listeria seeligeri FSL S4-171] Length = 161 Score = 98.2 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 18/168 (10%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + L++ + E E L E + + Y + ELSL FT + I Sbjct: 1 MTVLEIDLIDETKQIPTEDK--QLVENILQ------FAADYLKIDAGTELSLTFTTNEGI 52 Query: 68 ETLNFEYRGIDKPTNVLSFP----------TAFASSDGCSSLMLGDIVLAYEIIEIEANV 117 +N EYR D+ T+V+SF + D + MLGDI+++ E E +A Sbjct: 53 REINREYRNKDQATDVISFALEELGEGETEIDWGEFDLETPKMLGDIIISTEKAEEQAKD 112 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G L L +HG LHLLGYDH++ + +M GL++ +L+ G+ Sbjct: 113 YGHSKARELGFLAVHGLLHLLGYDHMEPDEEKIMFGLQKEVLDAYGLE 160 >gi|322420984|ref|YP_004200207.1| hypothetical protein GM18_3497 [Geobacter sp. M18] gi|320127371|gb|ADW14931.1| protein of unknown function UPF0054 [Geobacter sp. M18] Length = 121 Score = 98.2 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 40/112 (35%), Positives = 55/112 (49%), Gaps = 2/112 (1%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 ELS+ I LN EY G DK TNV+SF + +LGD+V++ + Sbjct: 4 PEAELSISIVGDRAIRVLNREYLGRDKATNVISFAMQEGEFGSVNPDLLGDVVVSVDTAA 63 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD--KDACVMEGLERSILEDL 162 EA G+ F + L L++HG LH+ G+DH +A ME ER I L Sbjct: 64 REAEEGGETFLSRLYFLVLHGILHITGFDHERSGVAEAARMEAKEREIFAFL 115 >gi|227551970|ref|ZP_03982019.1| metal-dependent hydrolase [Enterococcus faecium TX1330] gi|257895438|ref|ZP_05675091.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|293378305|ref|ZP_06624474.1| metalloprotein, YbeY family [Enterococcus faecium PC4.1] gi|293568656|ref|ZP_06679971.1| conserved hypothetical protein [Enterococcus faecium E1071] gi|227178875|gb|EEI59847.1| metal-dependent hydrolase [Enterococcus faecium TX1330] gi|257832003|gb|EEV58424.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|291588616|gb|EFF20449.1| conserved hypothetical protein [Enterococcus faecium E1071] gi|292643169|gb|EFF61310.1| metalloprotein, YbeY family [Enterococcus faecium PC4.1] Length = 158 Score = 98.2 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 18/165 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+ E +E + FA Y E+S+ F D+ I+ + Sbjct: 1 MDITFMDETNQVSEEKIKEIDDLLQFAA--------SYLELPEETEMSVTFMDNAAIQVI 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS----------SLMLGDIVLAYEIIEIEANVLGK 120 N +YRG D PT+V+SF D +LGDI+++ E +A G Sbjct: 53 NRDYRGKDAPTDVISFALEEEGEDEIPVIFEDGENPLPRVLGDIMISTERAAEQAEAYGH 112 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ L L +HGFLH+ GYDH+ +D M GL++ IL+ G+ Sbjct: 113 SYDRELGFLAVHGFLHINGYDHMTPEDEKEMFGLQKEILDAYGLK 157 >gi|255280944|ref|ZP_05345499.1| putative metalloprotease [Bryantella formatexigens DSM 14469] gi|255268392|gb|EET61597.1| putative metalloprotease [Bryantella formatexigens DSM 14469] Length = 167 Score = 98.2 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 69/155 (44%), Gaps = 18/155 (11%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 L E + K V ++ Y E+S+ TD I T+N E RGID T+VLS Sbjct: 11 ADLPFDWEDIAVKVVEAVLD--YTDCPYEAEVSVTLTDDAEIRTINREQRGIDAATDVLS 68 Query: 86 FPT------------AFASSDGCSS----LMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 FP +D LMLGDIV++ + + +A G L Sbjct: 69 FPMVSYEIPGNFDFLEEEPADCFHPDSGELMLGDIVISVDHVYAQAEQYGHSLLREYAFL 128 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + H HL+GYDH+ +++A ME + +LE L I Sbjct: 129 LAHSMFHLIGYDHMTEQEAAEMERKQEEVLERLNI 163 >gi|29376907|ref|NP_816061.1| putative metalloprotease [Enterococcus faecalis V583] gi|227553943|ref|ZP_03983990.1| metalloprotease [Enterococcus faecalis HH22] gi|46577437|sp|Q831T7|RRMF_ENTFA RecName: Full=Probable rRNA maturation factor gi|29344372|gb|AAO82131.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis V583] gi|227176929|gb|EEI57901.1| metalloprotease [Enterococcus faecalis HH22] gi|315574356|gb|EFU86547.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0309B] gi|315580169|gb|EFU92360.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0309A] Length = 159 Score = 98.2 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 19/166 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+ E E E + + G+ E+S+ FTD+ I+ + Sbjct: 1 MDITFIDETEKVPTEEIKE--IENLLQ------FAAGFLEIAEDTEMSVTFTDNAGIQMI 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS-----------SLMLGDIVLAYEIIEIEANVLG 119 N +YRG D PT+V+SF D LGD++++ E +A G Sbjct: 53 NRDYRGKDMPTDVISFALEDEGEDELPIIFDDEELAELPRNLGDLIISTERAAEQAVEYG 112 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 E + L +HGFLHL GYDH++ +D M GL++ IL+ G+ Sbjct: 113 HTLEREMGFLAVHGFLHLNGYDHMEPEDEKEMFGLQKEILDAYGLK 158 >gi|315925212|ref|ZP_07921426.1| metal dependent hydrolase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621446|gb|EFV01413.1| metal dependent hydrolase [Pseudoramibacter alactolyticus ATCC 23263] Length = 156 Score = 98.2 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 69/157 (43%), Gaps = 11/157 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L +Q + E + K ++ S+ V + I+E+SL I Sbjct: 1 MLTIQFENQTDEVLSEALWAK-MQTCIRKTLA---SENVLVDKLILEVSLTLVSPETIRM 56 Query: 70 LNFEYRGIDKPTNVLSFPTAFASS-------DGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 LN YRGID+ T+VLSFP ++LGDIVL + G F Sbjct: 57 LNANYRGIDRVTDVLSFPMLVFPEGMAALTAPSDLPILLGDIVLNPRRAAEQGETYGTGF 116 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 E + +L +H LHLLGYDH+D D M E++I+ Sbjct: 117 EREMCYLTVHSVLHLLGYDHMDPDDKQAMRAREKAIM 153 >gi|326803484|ref|YP_004321302.1| translation metalloprotein YbeY [Aerococcus urinae ACS-120-V-Col10a] gi|326651189|gb|AEA01372.1| translation metalloprotein YbeY [Aerococcus urinae ACS-120-V-Col10a] Length = 158 Score = 98.2 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 8/129 (6%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------- 97 + E+S I +N +YRG D+PT+V+SF S Sbjct: 28 AAKRLELNRETEMSATIVHDDEIHAINRDYRGKDRPTDVISFAINDESEGDSPITEWPED 87 Query: 98 -SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 LGD++++ + + +A E L L HGFLHL GYDH++ +D VM GL+R Sbjct: 88 LPYELGDLIISLDTAKRQAEEYNHSLERELGFLACHGFLHLNGYDHIEPEDEKVMFGLQR 147 Query: 157 SILEDLGIN 165 IL+ G+ Sbjct: 148 EILDAYGLK 156 >gi|323141990|ref|ZP_08076841.1| translation metalloprotein YbeY [Phascolarctobacterium sp. YIT 12067] gi|322413522|gb|EFY04390.1| translation metalloprotein YbeY [Phascolarctobacterium sp. YIT 12067] Length = 168 Score = 98.2 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 8/125 (6%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--------DGCSSLMLGD 103 E+ + D I LN EYRG+DKPT+VLSF G + GD Sbjct: 36 PEESEVDVTIVDDEEIHALNREYRGMDKPTDVLSFALDEDCEDEDEPELIGGPEEHLFGD 95 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 I+++ E +A G E + +L +HG HLLGYDH+ ++D M E L + Sbjct: 96 IIISAETALRQAEEYGHGLEREMTYLAVHGMFHLLGYDHMTEEDKAEMRAKEEEALRAIN 155 Query: 164 INDPY 168 +++ Y Sbjct: 156 LSEEY 160 >gi|315161671|gb|EFU05688.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0645] Length = 159 Score = 98.2 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 19/166 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+ E E E + ++ G+ E+S+ FTD+ I+ + Sbjct: 1 MDITFIDETEKVPTEEIKE--IENLLQ------LAAGFLEIAEDTEMSVTFTDNAGIQVI 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS-----------SLMLGDIVLAYEIIEIEANVLG 119 N +YRG D PT+V+SF D LGD++++ E +A G Sbjct: 53 NRDYRGKDMPTDVISFALEDEGEDELPIIFDDEELAELPRNLGDLIISTERAAEQAFEYG 112 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 E + L +HGFLHL GYDH++ +D M GL++ IL+ G+ Sbjct: 113 HTLEREMGFLAVHGFLHLNGYDHMEPEDEKEMFGLQKEILDAYGLK 158 >gi|291524855|emb|CBK90442.1| conserved hypothetical protein TIGR00043 [Eubacterium rectale DSM 17629] gi|291528996|emb|CBK94582.1| conserved hypothetical protein TIGR00043 [Eubacterium rectale M104/1] Length = 165 Score = 98.2 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 50/149 (33%), Positives = 72/149 (48%), Gaps = 18/149 (12%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--- 88 E V VS + F E++L TD+ I +N EYR ID+PT+VLSFP Sbjct: 17 YEKVAEAVVSASLEHESF--PYEAEVNLTLTDNEGIHAINKEYRQIDRPTDVLSFPMLSY 74 Query: 89 -------------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 + +MLGDI+++ + ++ +A G + LI H L Sbjct: 75 ETPGDFSFISDENEDDFNPDTGEVMLGDIIISVDKVKEQALEYGHSEKREFAFLITHSML 134 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGI 164 HL GYDH++ +A VME +R IL+ LGI Sbjct: 135 HLFGYDHMEADEAAVMEEHQRKILDALGI 163 >gi|126656865|ref|ZP_01728043.1| hypothetical protein CY0110_01764 [Cyanothece sp. CCY0110] gi|126621703|gb|EAZ92412.1| hypothetical protein CY0110_01764 [Cyanothece sp. CCY0110] Length = 172 Score = 98.2 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 12/174 (6%) Query: 1 MSVKKVNLPRLDLQ---IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVEL 57 M + + L++Q + + + F ++L+S Y + EL Sbjct: 1 MMIASDPVIDLNVQDAFVVSSDQTQISYPISCQTWKNWFQIWGNSLLS--YLPIASHYEL 58 Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS-------SDGCSSLMLGDIVLAYEI 110 +L T I++LN +YR ++PT+VL+F T + + L +GDIV++ E Sbjct: 59 TLRLTGDQEIQSLNAQYRHKNQPTDVLAFATLEENFPKITNQPEFLEPLYIGDIVISIET 118 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 E +A G L L HGFLHLLG+DH D++ M + ++L+ +G+ Sbjct: 119 AEKQAQKEGHTLNRELPWLASHGFLHLLGWDHPDEQSLQKMLQQQETLLKIIGL 172 >gi|110801968|ref|YP_699299.1| putative metalloprotease [Clostridium perfringens SM101] gi|122956576|sp|Q0SRF8|RRMF_CLOPS RecName: Full=Probable rRNA maturation factor gi|110682469|gb|ABG85839.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens SM101] Length = 168 Score = 98.2 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 21/167 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N ++ + + +S ++ + + E+SLVF D+ I +N E Sbjct: 2 IFIDNR--QNKFDVTEELTKKLEEVISFVLKEEKV--KEDCEVSLVFVDNEEIRGINNET 57 Query: 75 RGIDKPTNVLSFPTAFASSDGC-----------------SSLMLGDIVLAYEIIEIEANV 117 RGIDK T+VLSFP D L+LGDIVL+ E + ++ Sbjct: 58 RGIDKTTDVLSFPMIDYPEDKVYKDVYLEHEFDKCYFDGDELILGDIVLSLERTKEQSIE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 FE +L+ H LHLLGYDH+++++ M G E +L L I Sbjct: 118 FNHSFEREACYLVTHSVLHLLGYDHMEEEEKARMRGREEELLGKLNI 164 >gi|28211644|ref|NP_782588.1| putative metalloprotease [Clostridium tetani E88] gi|46577461|sp|Q892R9|RRMF_CLOTE RecName: Full=Probable rRNA maturation factor gi|28204086|gb|AAO36525.1| metal-binding protein [Clostridium tetani E88] Length = 167 Score = 97.8 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 21/168 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N ++I + + + + + + K E+S+++ D+ I+ +N + Sbjct: 2 IYIDNR--QNKIKAQEDLDKLINEIIDYALKKEEVDIG--YEISVIYVDNEIIKEINNDT 57 Query: 75 RGIDKPTNVLSFPTAFASSD-----------------GCSSLMLGDIVLAYEIIEIEANV 117 RGI+K T+VLSFP +L+LGDIVL+ E ++ Sbjct: 58 RGINKETDVLSFPMLEYPKGRVFSESYREYSFGVEYLNEGNLVLGDIVLSLEKALEQSKE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 F + +L++H LHLLGYDH+D+++ +M E ILE I+ Sbjct: 118 YNHSFLREVCYLVVHSVLHLLGYDHIDEEEKVIMRKKEEEILESFNIS 165 >gi|257090602|ref|ZP_05584963.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|312905134|ref|ZP_07764255.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0635] gi|256999414|gb|EEU85934.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|310631524|gb|EFQ14807.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0635] gi|315146687|gb|EFT90703.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX4244] gi|315579038|gb|EFU91229.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0630] gi|323481401|gb|ADX80840.1| conserved hypothetical protein [Enterococcus faecalis 62] Length = 159 Score = 97.8 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 19/166 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+ E E E + + G+ E+S+ FTD+ I+ + Sbjct: 1 MDITFIDETEKVPTEEIKE--IENLLQ------FAAGFLEIAEDTEMSVTFTDNAGIQVI 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS-----------SLMLGDIVLAYEIIEIEANVLG 119 N +YRG D PT+V+SF + LGD++++ E +A G Sbjct: 53 NRDYRGKDMPTDVISFALEDEGENELPIIFDDEELAELPRNLGDLIISTERAAEQAVEYG 112 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 E + L +HGFLHL GYDH++ +D M GL++ IL+ G+ Sbjct: 113 HTLEREMGFLAVHGFLHLNGYDHMEPEDEKEMFGLQKEILDAYGLK 158 >gi|81428486|ref|YP_395486.1| hypothetical protein LSA0876 [Lactobacillus sakei subsp. sakei 23K] gi|123564327|sp|Q38XA4|RRMF_LACSS RecName: Full=Probable rRNA maturation factor gi|78610128|emb|CAI55177.1| Hypothetical protein LCA_0876 [Lactobacillus sakei subsp. sakei 23K] Length = 158 Score = 97.8 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 20/166 (12%) Query: 11 LDLQIAVENALWGD-EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D+QI E + + +I L + + E+S+ F + RI Sbjct: 1 MDIQIIDETKIVPEAQIKLVEDVLEFAGQKLELA---------EDTEMSVTFVTNERIRQ 51 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDG----------CSSLMLGDIVLAYEIIEIEANVLG 119 +N EYR D+ T+V+SF + +GD+ ++ E +A G Sbjct: 52 INQEYRNTDRATDVISFAIEEDPEEEGLPANFEELFDIPKNIGDLFVSLEKAAEQAETYG 111 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 FE L + ++HGFLHL GYDH+ +D M L+ +IL++ G+ Sbjct: 112 HSFERELGYTMVHGFLHLNGYDHIHTEDEVKMIPLQETILDEFGLK 157 >gi|282899045|ref|ZP_06307026.1| protein of unknown function UPF0054 [Cylindrospermopsis raciborskii CS-505] gi|281195961|gb|EFA70877.1| protein of unknown function UPF0054 [Cylindrospermopsis raciborskii CS-505] Length = 174 Score = 97.8 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 12/173 (6%) Query: 1 MSVKKVNLPRLDLQIAVENA---LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVEL 57 MS + +L +++ +EN+ +++ + F++ ++ L K E+ Sbjct: 1 MSSQTKVQTQLQVELFIENSYDLNLTNQVSEEKWY-MWFSQWLTLLAVKLPRAL--SYEI 57 Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIVLAYEII 111 L T+ +I+ LN +YR D+PT+VL+F + L LGDIV++ + Sbjct: 58 GLQLTNDAQIQELNAQYRQKDQPTDVLAFAALENNFPYTEEMLASQPLYLGDIVISIDTA 117 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A L L HG LHLLG+DH D++ M + +L+ +GI Sbjct: 118 ICQAQEREHNLTTELAWLSAHGLLHLLGWDHPDEQSLIEMLNKQSMLLKSVGI 170 >gi|86159141|ref|YP_465926.1| hypothetical protein Adeh_2719 [Anaeromyxobacter dehalogenans 2CP-C] gi|123498733|sp|Q2ILG1|RRMF_ANADE RecName: Full=Probable rRNA maturation factor gi|85775652|gb|ABC82489.1| protein of unknown function UPF0054 [Anaeromyxobacter dehalogenans 2CP-C] Length = 193 Score = 97.8 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 3/106 (2%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 ELS++ RI TLN E+R D+ T+VLSFP + + +LGD+V++ + Sbjct: 33 EDAELSILLVTDRRIRTLNREWRQKDQATDVLSFPISEPP---GAGALLGDVVISLDTAA 89 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 A G+ L + HG LHLLGYDH DA M E + Sbjct: 90 RRARSDGRRVGAELDRYLAHGILHLLGYDHERPADARAMAEKEAEL 135 >gi|325135872|gb|EGC58484.1| hypothetical protein TIGR00043 [Neisseria meningitidis M0579] Length = 171 Score = 97.8 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 6/141 (4%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 33 ERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGE 88 Query: 93 SDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 C + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A + Sbjct: 89 ILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFTHLTIHGVLHLMGYDHIEDDEAEI 148 Query: 151 MEGLERSILEDLGINDPYEVD 171 ME E ++ G +PY+ D Sbjct: 149 MEAEEIRLMLAAGFPNPYQED 169 >gi|302335756|ref|YP_003800963.1| protein of unknown function UPF0054 [Olsenella uli DSM 7084] gi|301319596|gb|ADK68083.1| protein of unknown function UPF0054 [Olsenella uli DSM 7084] Length = 168 Score = 97.8 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 53/109 (48%), Gaps = 3/109 (2%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA---FASSDGCSSLMLGDIVLAYEI 110 +S+ R+ LN +R D+ T+VLS LGDIVLA Sbjct: 39 PCAVSVSIVSDERMRELNRTWRDQDRATDVLSLECERPGDPDLAPGEPCELGDIVLAPSY 98 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 I +A L + L++HG LHLLGYDH+DD +A VME E ++L Sbjct: 99 IRRQAQRLSTTEADECRLLLVHGMLHLLGYDHLDDAEAEVMEAREDALL 147 >gi|125973584|ref|YP_001037494.1| hypothetical protein Cthe_1069 [Clostridium thermocellum ATCC 27405] gi|256003403|ref|ZP_05428394.1| protein of unknown function UPF0054 [Clostridium thermocellum DSM 2360] gi|281417789|ref|ZP_06248809.1| protein of unknown function UPF0054 [Clostridium thermocellum JW20] gi|166228137|sp|A3DEC2|RRMF_CLOTH RecName: Full=Probable rRNA maturation factor gi|125713809|gb|ABN52301.1| protein of unknown function UPF0054 [Clostridium thermocellum ATCC 27405] gi|255992693|gb|EEU02784.1| protein of unknown function UPF0054 [Clostridium thermocellum DSM 2360] gi|281409191|gb|EFB39449.1| protein of unknown function UPF0054 [Clostridium thermocellum JW20] gi|316940174|gb|ADU74208.1| protein of unknown function UPF0054 [Clostridium thermocellum DSM 1313] Length = 162 Score = 97.8 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 15/164 (9%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I +EN D+I + + KA+ + F E E+S++ TD+ +I +N+ Sbjct: 1 MEIFIENI--QDKIEITDEILELMEKAIKMCLEHEKF--EYPYEVSIILTDNEKIREINY 56 Query: 73 EYRGIDKPTNVLSFPT-----------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 E R IDKPT+VLSFP ++LGDI+++ E + ++ G Sbjct: 57 EQRNIDKPTDVLSFPIVDMYDGVIKSSQGDFDLDEGRIILGDILISMEKAKEQSMEYGHS 116 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 FE L+ L+ HG HLLGYDH + M + +IL+ L + Sbjct: 117 FERELIFLLTHGVFHLLGYDHDTPEREKKMFEKQEAILKSLNLE 160 >gi|57899484|dbj|BAD86945.1| haloacid dehalogenase-like hydrolase-like [Oryza sativa Japonica Group] Length = 593 Score = 97.8 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 2/111 (1%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 + VE+S++ + + I+ LN E+RG D +LS + + LMLGDIV++ E Sbjct: 169 DKVEVSVLLCNDNFIQNLNKEWRGEDSCIEMLSM-SQYIPDLDVPILMLGDIVISVETAA 227 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD-ACVMEGLERSILEDL 162 +A G + + L + G L LLG+DH + A ME E+ IL+ L Sbjct: 228 RQAEERGHTLLDEVRILAVRGILRLLGFDHQTSHESAVEMEKEEQLILKSL 278 >gi|169824430|ref|YP_001692041.1| putative metal-dependent hydrolase [Finegoldia magna ATCC 29328] gi|238687740|sp|B0S1B1|RRMF_FINM2 RecName: Full=Probable rRNA maturation factor gi|167831235|dbj|BAG08151.1| putative metal-dependent hydrolase [Finegoldia magna ATCC 29328] Length = 153 Score = 97.8 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 11/161 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +QI+ + + L + E + + ++ E+SL F I L Sbjct: 1 MIIQISNRQEDFQIDDELTSDIEKSIRICLLQ------ELNDDNYEISLSFVSESEIRKL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YR D T+VLSFP + + +LGDI++ + +A + +V+L+ Sbjct: 55 NSDYRDKDSVTDVLSFPLDDDFAIQTN--LLGDIIICCKRAIEQAKEYNHSIKREIVYLV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +H HLLGYDH+D+ D +M E+S L+++GI Y+ + Sbjct: 113 VHSMFHLLGYDHIDESDRIIMRNKEKSALKEIGI---YKDE 150 >gi|153853176|ref|ZP_01994585.1| hypothetical protein DORLON_00570 [Dorea longicatena DSM 13814] gi|149753962|gb|EDM63893.1| hypothetical protein DORLON_00570 [Dorea longicatena DSM 13814] Length = 164 Score = 97.8 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 17/154 (11%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + L CE + + V + Y E++L+ T++ +I +N E+RGID+ T+VLS Sbjct: 11 VKLPLECEALAKRVVEEALD--YVGCPYEAEVNLLLTENAQIHEMNKEFRGIDRATDVLS 68 Query: 86 FPTAFASSDGC---------------SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 FP G L LGDIV++ E + +A G LI Sbjct: 69 FPMIDYPEPGTFDFLEEQEDCFDPESGELTLGDIVISKEKVLAQAEEYGHSPMREYAFLI 128 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 H LHL GYDH++D++ VME +R I+E L I Sbjct: 129 AHSVLHLTGYDHMEDEERQVMEQKQREIMERLDI 162 >gi|116495001|ref|YP_806735.1| metal-dependent hydrolase [Lactobacillus casei ATCC 334] gi|227534992|ref|ZP_03965041.1| metal-dependent hydrolase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631405|ref|ZP_04674436.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066563|ref|YP_003788586.1| putative metal-dependent hydrolase [Lactobacillus casei str. Zhang] gi|122263582|sp|Q038S9|RRMF_LACC3 RecName: Full=Probable rRNA maturation factor gi|116105151|gb|ABJ70293.1| Predicted metal-dependent hydrolase [Lactobacillus casei ATCC 334] gi|227187383|gb|EEI67450.1| metal-dependent hydrolase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525870|gb|EEQ64871.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438970|gb|ADK18736.1| Predicted metal-dependent hydrolase [Lactobacillus casei str. Zhang] Length = 152 Score = 97.8 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----GCSS 98 E+S+ IE +N EYR D+ T+V+SF D + Sbjct: 25 AFCGKQLKLPENTEMSITLVGDDEIERINREYRETDRVTDVISFAIEEGEDDLPLLPGMA 84 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +GD+ + + A G FE L + ++HGFLHL GYDH+ +D VM L++ I Sbjct: 85 KNIGDLFIDPLTVRRHAEDYGHSFERELGYTVVHGFLHLNGYDHIKPEDEAVMIPLQKKI 144 Query: 159 LEDLGI 164 L G+ Sbjct: 145 LAAYGL 150 >gi|257882778|ref|ZP_05662431.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257886864|ref|ZP_05666517.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257898044|ref|ZP_05677697.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|293571620|ref|ZP_06682641.1| conserved hypothetical protein [Enterococcus faecium E980] gi|294622996|ref|ZP_06701885.1| conserved hypothetical protein [Enterococcus faecium U0317] gi|257818436|gb|EEV45764.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257822918|gb|EEV49850.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257835956|gb|EEV61030.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|291597552|gb|EFF28714.1| conserved hypothetical protein [Enterococcus faecium U0317] gi|291608290|gb|EFF37591.1| conserved hypothetical protein [Enterococcus faecium E980] Length = 158 Score = 97.8 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 10/132 (7%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------ 97 + Y E+S+ F D+ I+ +N +YRG D PT+V+SF D Sbjct: 26 FAASYLELPEETEMSVTFMDNAAIQVINRDYRGKDAPTDVISFALEEEGEDEIPVIFEDG 85 Query: 98 ----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 +LGDI+++ E +A G ++ L L +HGFLH+ GYDH+ +D M G Sbjct: 86 ENPLPRVLGDIMISTERAAEQAEAYGHSYDRELGFLAVHGFLHINGYDHMTPEDEKEMFG 145 Query: 154 LERSILEDLGIN 165 L++ IL+ G+ Sbjct: 146 LQKEILDAYGLK 157 >gi|294786871|ref|ZP_06752125.1| putative metalloprotease [Parascardovia denticolens F0305] gi|294485704|gb|EFG33338.1| putative metalloprotease [Parascardovia denticolens F0305] Length = 172 Score = 97.8 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 3/109 (2%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEI 110 +LS+ F D + L+ + ++ PT+V+SFP MLGDI+L E+ Sbjct: 34 ESDLSIAFIDPAPMAELHLRWMNLEGPTDVMSFPMDELRPGTETDRDEGMLGDIILCPEV 93 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH +D M G++R +L Sbjct: 94 AADQAAAAGHSTIEEMMLLTIHGVLHLLGYDHATPEDEKRMFGIQRQLL 142 >gi|322411294|gb|EFY02202.1| putative metalloprotease [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 165 Score = 97.8 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 66/171 (38%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E EI + + L + E+S+ F + R L Sbjct: 1 MYIEMIDETGQVSQEI---------MEQTIDLLNFAAQKTGKEEKEMSVTFVTNARSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-----------------GCSSLMLGDIVLAYEIIEI 113 N EYR D+PT+V+S + +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPETPILFSQDDLAADPSLAEMMAEFDAYIGELFISIDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 112 QAQDYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEILTAYGL 162 >gi|304388236|ref|ZP_07370356.1| metal-dependent hydrolase [Neisseria meningitidis ATCC 13091] gi|304337763|gb|EFM03912.1| metal-dependent hydrolase [Neisseria meningitidis ATCC 13091] Length = 211 Score = 97.8 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 72 AERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 127 Query: 92 SSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 128 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAE 187 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 188 IMEAEEIRLMLAAGFPNPYQED 209 >gi|315226507|ref|ZP_07868295.1| metalloprotease [Parascardovia denticolens DSM 10105] gi|315120639|gb|EFT83771.1| metalloprotease [Parascardovia denticolens DSM 10105] Length = 175 Score = 97.8 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 13/155 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + R+ + I E + + L + + +LS+ F D + Sbjct: 1 MDRMSVDITNETEWGINPLVFSDLA----------VWTMDQMRVSTESDLSIAFIDPAPM 50 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 L+ + ++ PT+V+SFP MLGDI+L E+ +A G Sbjct: 51 AELHLRWMNLEGPTDVMSFPMDELRPGTETDRDEGMLGDIILCPEVAADQAAAAGHSTIE 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 ++ L IHG LHLLGYDH +D M G++R +L Sbjct: 111 EMMLLTIHGVLHLLGYDHATPEDEKRMFGIQRQLL 145 >gi|167465835|ref|ZP_02330924.1| hypothetical protein Plarl_25263 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 150 Score = 97.8 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 62/148 (41%), Gaps = 19/148 (12%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 + L G E++L F ++ I LN +YRGID+PT+VLSF D Sbjct: 1 IDRLEQLLALAGKEEGIEDGEVTLTFVNNDMIHELNRQYRGIDRPTDVLSFAMQEMGEDE 60 Query: 96 CSSLM-------------------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 LGDI+++ +A G FE L L +HGFLH Sbjct: 61 LIISYGELDEDGIEAVLEDKIVEPLGDIIISIPKTIEQAEEYGHSFERELGFLFVHGFLH 120 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGI 164 L+GYDH + + M + IL G+ Sbjct: 121 LVGYDHQTEDEEKKMFAKQELILSQAGL 148 >gi|261401807|ref|ZP_05987932.1| putative metalloprotease [Neisseria lactamica ATCC 23970] gi|269208047|gb|EEZ74502.1| putative metalloprotease [Neisseria lactamica ATCC 23970] Length = 171 Score = 97.8 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 57/178 (32%), Positives = 83/178 (46%), Gaps = 16/178 (8%) Query: 1 MSVKKVNLPRLDLQ-----IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIV 55 M K P L LQ + ENA +L + + F + + + GY Sbjct: 1 MKRAK-KYPFLTLQRQRFHLNFENA--SSAANLPSKHD--FYRWAWSALKSGY----RRA 51 Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEI 113 ++SL+ D N +YRG D TNVLSF S + GD+++ +++ Sbjct: 52 DISLILLDEEAARAYNCDYRGKDYATNVLSFALNEGETLPCQVSEKLYGDLIICPQVVLK 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY D Sbjct: 112 EAAEQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAEIMEAEEIRLMRAAGYPNPYRED 169 >gi|154498349|ref|ZP_02036727.1| hypothetical protein BACCAP_02338 [Bacteroides capillosus ATCC 29799] gi|150272660|gb|EDM99838.1| hypothetical protein BACCAP_02338 [Bacteroides capillosus ATCC 29799] Length = 164 Score = 97.8 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 18/165 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++ ++ +E + G E L V A+ E+ ++FTD I + Sbjct: 1 MNHELIIETEVEGAE-PYADLLRQVIPAALEA------EGVAVPWEVDVLFTDDEGIHQI 53 Query: 71 NFEYRGIDKPTNVLSFPT----------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 N E R +D+PT+VLSFP + G + LGD+V++ E + + G Sbjct: 54 NLEQREVDRPTDVLSFPMFDLQPGEHPTEEDADPGTGLVPLGDMVISLERAQAQGEEYGH 113 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGI 164 + +L +H LHLLGYDH+D+ M E +ILE LGI Sbjct: 114 GTRREVAYLAVHSVLHLLGYDHMDEGPMKAQMRAREEAILEQLGI 158 >gi|225378120|ref|ZP_03755341.1| hypothetical protein ROSEINA2194_03780 [Roseburia inulinivorans DSM 16841] gi|225210121|gb|EEG92475.1| hypothetical protein ROSEINA2194_03780 [Roseburia inulinivorans DSM 16841] Length = 165 Score = 97.8 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 16/129 (12%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----------------AFASSDG 95 E++L D+ I +N E+R ID+PT+VLSFP + Sbjct: 35 PYEPEVNLTLVDNEGIHAINKEFREIDRPTDVLSFPMLSYENAGDFSKLEDDYDDNFNPD 94 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 +MLGDIV++ + + +A G + LI+H LHL GYDH+ ++A VME + Sbjct: 95 TGEIMLGDIVISVDKVLEQAESYGHTTKREYAFLIVHSMLHLFGYDHMTPEEAAVMEAKQ 154 Query: 156 RSILEDLGI 164 + IL+++ I Sbjct: 155 KQILDEMNI 163 >gi|291519462|emb|CBK74683.1| conserved hypothetical protein TIGR00043 [Butyrivibrio fibrisolvens 16/4] Length = 165 Score = 97.8 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 22/170 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I E D + + V A+ +L E+S+ TD+ I+ + Sbjct: 1 MTIFIESECDFDFD-FDYEKVAKDVVNTAMDHLGFPF------EAEISITITDNDGIQAI 53 Query: 71 NFEYRGIDKPTNVLSFPT---------------AFASSDGCSSLMLGDIVLAYEIIEIEA 115 N E+R ID PT+VLSFP + ++LGDIVL+ I +A Sbjct: 54 NKEFRNIDAPTDVLSFPMIDYPAPGKFDHIENDDDLFNPETGEVILGDIVLSVPRILSQA 113 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G LI H LHL G+DH+ + DA VME +R IL+ L I+ Sbjct: 114 EEYGHSVLREYAFLIAHSMLHLFGFDHMTESDASVMEQKQREILDILNIS 163 >gi|145352030|ref|XP_001420362.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580596|gb|ABO98655.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 411 Score = 97.8 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 5/112 (4%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 ELS+ I +LN YR D T+VLSFP +LGD++++ + + Sbjct: 4 CELSVALCSDEYIRSLNAGYREKDSATDVLSFPAES----FGPMAVLGDVIVSVDTASAQ 59 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGIN 165 A +G + L++HG LHLLG DH + +A VM E+ +L+ LG Sbjct: 60 AREVGHSLRDECRVLLVHGTLHLLGMDHEVSESEAEVMAAAEQEVLKALGWK 111 >gi|238916903|ref|YP_002930420.1| hypothetical protein EUBELI_00972 [Eubacterium eligens ATCC 27750] gi|259710181|sp|C4Z060|RRMF_EUBE2 RecName: Full=Probable rRNA maturation factor gi|238872263|gb|ACR71973.1| Hypothetical protein EUBELI_00972 [Eubacterium eligens ATCC 27750] Length = 169 Score = 97.4 bits (241), Expect = 5e-19, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 75/174 (43%), Gaps = 27/174 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I E E L E + V+ + Y E+++ DS I + Sbjct: 1 MTINIEYEA-----EEKLDLDYEKIITDVVNEAVD--YEKCPYEAEVNVTIVDSESIHEI 53 Query: 71 NFEYRGIDKPTNVLSFP--------------------TAFASSDGCSSLMLGDIVLAYEI 110 N EYR ID PT+VLSFP + L+LGDIVL + Sbjct: 54 NKEYRNIDSPTDVLSFPGVNYVTPSDFDAIEDELENNAEDYFNPDTGELLLGDIVLCVQK 113 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 I+ +A+ G + L L H +HL GYDH+ +++ VME + +LE LGI Sbjct: 114 IKEQADKYGHSEKRELAFLTAHSMMHLFGYDHMTPEESAVMEAKQNEVLERLGI 167 >gi|258645788|ref|ZP_05733257.1| putative metalloprotease [Dialister invisus DSM 15470] gi|260403159|gb|EEW96706.1| putative metalloprotease [Dialister invisus DSM 15470] Length = 164 Score = 97.4 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 70/158 (44%), Gaps = 9/158 (5%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +++ I + + E L TL V +K ELSL+ D+ I Sbjct: 1 MMEITINYSDEQFYSE-ELETLILRVLSK------GAELQNVAEDAELSLLICDADTIHE 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLM--LGDIVLAYEIIEIEANVLGKEFENHLV 127 LN YRG+D PT+VLSF + LGDI++ +A G E + Sbjct: 54 LNKTYRGVDAPTDVLSFALNEGEEEDGMEEEKVLGDIIINLYRAVEQAEEFGHSKEREMA 113 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +L +HGFLH+LGYDH D ++ M E IL G+ Sbjct: 114 YLSVHGFLHILGYDHYDPEEKRKMREKEEEILGACGME 151 >gi|325661630|ref|ZP_08150254.1| hypothetical protein HMPREF0490_00988 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472157|gb|EGC75371.1| hypothetical protein HMPREF0490_00988 [Lachnospiraceae bacterium 4_1_37FAA] Length = 164 Score = 97.4 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 21/162 (12%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 E + R L E V A+AV Y E++L+ T + I +N ++R I Sbjct: 7 EEGAYQLPFDCRKLAEKVIAEAVD------YEQCPYETEVNLLLTMNEEIREMNRQFREI 60 Query: 78 DKPTNVLSFPT---------------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 D+ T+VLSFP LMLGDIV++ E + +A G Sbjct: 61 DRATDVLSFPMVDYGTPGDFEFLEEDDSYFHPESGELMLGDIVISKEKVTAQAEEYGHTE 120 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 E L+ H LHL GYDH+++ + VME +R ILE L I Sbjct: 121 EREFAFLVAHSMLHLFGYDHMEEDERAVMEQKQREILERLNI 162 >gi|253577936|ref|ZP_04855208.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850254|gb|EES78212.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 164 Score = 97.4 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 75/169 (44%), Gaps = 22/169 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++QI E I TL V K + +++LV TD+ IE + Sbjct: 1 MNMQIDYETERELG-IDYETLAVKVADKVLEM------EKCPYDAQVNLVLTDNEEIERV 53 Query: 71 NFEYRGIDKPTNVLSFPT---------------AFASSDGCSSLMLGDIVLAYEIIEIEA 115 N E+R I +PT+VLSFP L+LGDI+++ + + +A Sbjct: 54 NTEFRDIARPTDVLSFPMIPFETPAGYDIVEEDESYFDLDTDELLLGDIMISVDKVFAQA 113 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G L+ H LHLLGYDH+ +A VME + LE+LGI Sbjct: 114 EEYGHSVTREFCFLVAHSMLHLLGYDHMTPGEATVMEAKQAKALEELGI 162 >gi|317508757|ref|ZP_07966408.1| hypothetical protein HMPREF9336_02780 [Segniliparus rugosus ATCC BAA-974] gi|316252951|gb|EFV12370.1| hypothetical protein HMPREF9336_02780 [Segniliparus rugosus ATCC BAA-974] Length = 180 Score = 97.4 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E+ L E L + + + ELS++ D+ + L Sbjct: 1 MSVELANESGLAAPEGMLIHVAQFALDQM----------RVNPAAELSMLLVDTSTMAHL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSS------LMLGDIVLAYEIIEIEANVLGKEFEN 124 + ++ + PT+VLSFP A DG +LGDIVL E+ +A G E+ Sbjct: 51 HQQWMNLPGPTDVLSFPMDDAEPDGRPDAVEAAQTLLGDIVLCPEVAAEQAEAAGHSTEH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L+ L +HG LH+LGYDH + ++ M GL+ ++E Sbjct: 111 ELIVLTVHGVLHILGYDHAEPEEEAEMFGLQGKLVER 147 >gi|266623022|ref|ZP_06115957.1| putative metalloprotease [Clostridium hathewayi DSM 13479] gi|288865224|gb|EFC97522.1| putative metalloprotease [Clostridium hathewayi DSM 13479] Length = 165 Score = 97.4 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 23/171 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I E +E+ L E + V+ + Y E++++ TD+ I + Sbjct: 1 MTIHIEYETE---EELKLP--YEEIITTVVNEALD--YENCPYEAEVNVLLTDNEDIRQI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFAS----------------SDGCSSLMLGDIVLAYEIIEIE 114 N EYR ID T+VLSFP A + L+LGDIV++ + ++ + Sbjct: 54 NKEYRDIDNATDVLSFPMADYDSPSDFDRLEDMASDYFNPETGELLLGDIVISVDKVKEQ 113 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 A G L L+ H LHL GYDH+ D++ VME + IL+ G Sbjct: 114 AEKYGHSETRELAFLVAHSMLHLCGYDHMVDEERLVMEKKQEEILKRGGYE 164 >gi|308808316|ref|XP_003081468.1| Protein of unknown function UPF0054 (ISS) [Ostreococcus tauri] gi|116059931|emb|CAL55990.1| Protein of unknown function UPF0054 (ISS) [Ostreococcus tauri] Length = 122 Score = 97.4 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 36/82 (43%), Positives = 44/82 (53%) Query: 90 FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 G A+E EA G FE H+ HLI+HG LHLLGYDH+ D DA Sbjct: 35 EPGDHRHQPPPPGRHRAAWETCGREAAEQGIAFEQHVTHLIVHGVLHLLGYDHMRDADAT 94 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME LE IL +LG+ +PY D Sbjct: 95 LMERLEAEILGNLGLPNPYGED 116 >gi|229824092|ref|ZP_04450161.1| hypothetical protein GCWU000282_01396 [Catonella morbi ATCC 51271] gi|229786446|gb|EEP22560.1| hypothetical protein GCWU000282_01396 [Catonella morbi ATCC 51271] Length = 176 Score = 97.4 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 36/182 (19%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I + A L V A Y +EL L + I+ L Sbjct: 1 MLVDIIDDQAYL--AAGQEKLLHEVIEAAAK------YLKLPGGIELDLSIVSNEEIQAL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGC----------------------------SSLMLG 102 N +YRG+DKPT+VLSF SS+ LG Sbjct: 53 NRDYRGLDKPTDVLSFALTEVSSEYDVDFAHLDLAEEAEETEDLEETEFEEEEAIPQHLG 112 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DI+++Y + +A G + L L +HGFLHL GYDH +++A M ++ +L Sbjct: 113 DIIISYPRAQEQAQDYGHSLDRELAFLAVHGFLHLNGYDHQTEEEAQEMFRIQEEVLTTY 172 Query: 163 GI 164 G+ Sbjct: 173 GL 174 >gi|262370521|ref|ZP_06063846.1| metal-dependent hydrolase [Acinetobacter johnsonii SH046] gi|262314321|gb|EEY95363.1| metal-dependent hydrolase [Acinetobacter johnsonii SH046] Length = 159 Score = 97.4 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 8/161 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L ++++ E+ L+ K V ++ E+ + D L Sbjct: 1 MKLSLSLQQDFQAPELVLK---RGYLKKVVETVLRHIGTQSN--CEIGIACVDHDESHKL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N EYRG DK TNVLSFP+ S +GD+V+ ++ +EA K H H Sbjct: 56 NLEYRGKDKSTNVLSFPSDLPDEMAQILDSFPIGDLVICIPVVLLEAKEQNKAPLTHFTH 115 Query: 129 LIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPY 168 +++HG LHL+GYDH + DA MEG+E IL LG +PY Sbjct: 116 MLVHGTLHLMGYDHETSEADAEEMEGIEIEILAKLGFENPY 156 >gi|227524437|ref|ZP_03954486.1| metal-dependent hydrolase [Lactobacillus hilgardii ATCC 8290] gi|227088396|gb|EEI23708.1| metal-dependent hydrolase [Lactobacillus hilgardii ATCC 8290] Length = 161 Score = 97.4 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 19/167 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL+I + E L V + Y + E+S+ +++ I + Sbjct: 1 MDLEIYDKTEKGISEKD-EKLIRDVLN------FAGSYIHLADNTEMSVTLVNNNEIHKI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL------------MLGDIVLAYEIIEIEANVL 118 N EYRG+D+ T+V+SF + D + +GDI ++ + + +A+ L Sbjct: 54 NREYRGVDRATDVISFAIEDEAEDDDFPIVMDEDMQESIPENIGDIFVSVDKVAEQADYL 113 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G F+ L L++HGFLHL GYDH++ DA +M L+ IL G+ Sbjct: 114 GHSFQRELGFLVVHGFLHLNGYDHMEKADADIMFPLQEEILNAYGLK 160 >gi|110800128|ref|YP_696698.1| putative metalloprotease [Clostridium perfringens ATCC 13124] gi|168208720|ref|ZP_02634345.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens B str. ATCC 3626] gi|168212945|ref|ZP_02638570.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens CPE str. F4969] gi|182624386|ref|ZP_02952170.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens D str. JGS1721] gi|122958755|sp|Q0TNU2|RRMF_CLOP1 RecName: Full=Probable rRNA maturation factor gi|110674775|gb|ABG83762.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens ATCC 13124] gi|170713197|gb|EDT25379.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens B str. ATCC 3626] gi|170715613|gb|EDT27795.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens CPE str. F4969] gi|177910389|gb|EDT72766.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens D str. JGS1721] Length = 168 Score = 97.4 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 21/167 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N ++ + + +S ++ + + E+SLVF D+ I +N E Sbjct: 2 IFIDNR--QNKFEVTEELTKKLEEVISFVLKEEKV--KEDCEVSLVFVDNEEIRGINNET 57 Query: 75 RGIDKPTNVLSFPTAFASSDGC-----------------SSLMLGDIVLAYEIIEIEANV 117 RGID+ T+VLSFP D L+LGDIVL+ E + ++ Sbjct: 58 RGIDRATDVLSFPMIDYPEDKVYKDVYLEHEFDKCYFDGDELILGDIVLSLERTKEQSIE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 FE +L+ H LHLLGYDH+++++ M G E +L L I Sbjct: 118 FNHSFEREACYLVTHSVLHLLGYDHMEEEEKARMRGREEELLGKLNI 164 >gi|312869122|ref|ZP_07729296.1| translation metalloprotein YbeY [Lactobacillus oris PB013-T2-3] gi|311095368|gb|EFQ53638.1| translation metalloprotein YbeY [Lactobacillus oris PB013-T2-3] Length = 159 Score = 97.0 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 10/131 (7%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------ 97 + ++ E+S+ + I LN +YRG+D+ T+VLSF + + Sbjct: 27 FAARQLSLKDSTEMSVTMMTNPAIRKLNQQYRGVDRATDVLSFAAEESGDETPIIMDPEL 86 Query: 98 ----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 LGD+ ++ + +E +A LG + L L++HGFLHL GYDH D M Sbjct: 87 AAELPENLGDLFVSIDKVEEQAKFLGHSVDRELGFLVVHGFLHLNGYDHEKQADEQRMFD 146 Query: 154 LERSILEDLGI 164 L+R IL++ G+ Sbjct: 147 LQREILDEYGL 157 >gi|323126736|gb|ADX24033.1| putative metalloprotease [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 165 Score = 97.0 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 66/171 (38%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E EI + + L + E+S+ F + R L Sbjct: 1 MYIEMIDETGQVSQEI---------MEQTIDLLNFAAQKTGKEEKEMSVTFVTNARSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-----------------GCSSLMLGDIVLAYEIIEI 113 N EYR D+PT+V+S + +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPETPILFSQDDLAADPSLAEMMAEFDAYIGELFISIDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 112 QAEDYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEILTAYGL 162 >gi|331084774|ref|ZP_08333862.1| hypothetical protein HMPREF0987_00165 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410868|gb|EGG90290.1| hypothetical protein HMPREF0987_00165 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 164 Score = 97.0 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 73/162 (45%), Gaps = 21/162 (12%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 E + R L E V A+AV Y E++L+ T + I +N E+R I Sbjct: 7 EEGAYQLPFDCRKLAEKVIAEAVD------YEQCPYETEVNLLLTMNEEIREMNREFREI 60 Query: 78 DKPTNVLSFPT---------------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 D+ T+VLSFP LMLGDIV++ E + +A G Sbjct: 61 DRATDVLSFPMVDYGTPGDFEFLEEDDSYFHPESGELMLGDIVISKEKVTAQAEEYGHTE 120 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 E L+ H LHL GYDH+++ + VME +R ILE L I Sbjct: 121 EREFAFLVAHSMLHLFGYDHMEEDERAVMEQKQREILERLNI 162 >gi|163783493|ref|ZP_02178484.1| hypothetical protein HG1285_08769 [Hydrogenivirga sp. 128-5-R1-1] gi|159881257|gb|EDP74770.1| hypothetical protein HG1285_08769 [Hydrogenivirga sp. 128-5-R1-1] Length = 142 Score = 97.0 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 7/140 (5%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 ++ R L + K ++ ELS++ TD I LN YRG D+PT+VL Sbjct: 7 KLRKRRLKKTWLRKRAELILRVLGV---ENSELSILLTDDEEIRELNRVYRGKDRPTDVL 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV- 143 SFP L+LGD+V++ + +A LG E + L+ HG +HLLGYDH Sbjct: 64 SFPIGEE---VAGRLILGDVVISLDTARRQAEGLGHTLEEEVSRLLAHGIIHLLGYDHEL 120 Query: 144 DDKDACVMEGLERSILEDLG 163 ++ LE + +LG Sbjct: 121 GGEEEERFRALEERVNAELG 140 >gi|227513293|ref|ZP_03943342.1| metal-dependent hydrolase [Lactobacillus buchneri ATCC 11577] gi|227083494|gb|EEI18806.1| metal-dependent hydrolase [Lactobacillus buchneri ATCC 11577] Length = 161 Score = 97.0 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 19/167 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL+I + E L V + Y + E+S+ +++ I + Sbjct: 1 MDLEIYDKTEKGISEKD-EKLIRDVLN------FAGSYIHLADNTEMSVTLVNNNEIHKI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL------------MLGDIVLAYEIIEIEANVL 118 N EYRG+D+ T+V+SF + D + +GDI ++ + + +A+ L Sbjct: 54 NREYRGVDRATDVISFAIEDEAEDDDFPIVMDEDMQESIPENIGDIFVSVDKVAEQADYL 113 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G F+ L L++HGFLHL GYDH++ DA +M L++ IL G+ Sbjct: 114 GHSFQRELGFLVVHGFLHLNGYDHMEKADADIMFPLQKEILNAYGLK 160 >gi|307155325|ref|YP_003890709.1| hypothetical protein Cyan7822_5562 [Cyanothece sp. PCC 7822] gi|306985553|gb|ADN17434.1| protein of unknown function UPF0054 [Cyanothece sp. PCC 7822] Length = 181 Score = 97.0 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 8/136 (5%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E F + L++ + ELSL TD I+ N +YR ++PT+VL+F Sbjct: 42 ESWFQIWLEMLVAA--LPSSDSYELSLRLTDDQEIQYYNAQYRHKNQPTDVLAFAALEVE 99 Query: 93 SDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 L LGDI+++ E +A G L +L HGFLHLLG+DH DD+ Sbjct: 100 VPYQIDEFSDEPLYLGDIIISVETASRQATEQGHSLTRELANLAAHGFLHLLGWDHPDDE 159 Query: 147 DACVMEGLERSILEDL 162 M + +L L Sbjct: 160 SLMAMLSQQEILLNHL 175 >gi|183601565|ref|ZP_02962935.1| hypothetical protein BIFLAC_02897 [Bifidobacterium animalis subsp. lactis HN019] gi|219683900|ref|YP_002470283.1| metalloprotease [Bifidobacterium animalis subsp. lactis AD011] gi|241190936|ref|YP_002968330.1| putative metalloprotease [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196342|ref|YP_002969897.1| putative metalloprotease [Bifidobacterium animalis subsp. lactis DSM 10140] gi|254800500|sp|B8DUM8|RRMF_BIFA0 RecName: Full=Probable rRNA maturation factor gi|183219171|gb|EDT89812.1| hypothetical protein BIFLAC_02897 [Bifidobacterium animalis subsp. lactis HN019] gi|219621550|gb|ACL29707.1| conserved hypothetical protein [Bifidobacterium animalis subsp. lactis AD011] gi|240249328|gb|ACS46268.1| putative metalloprotease [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250896|gb|ACS47835.1| putative metalloprotease [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793925|gb|ADG33460.1| putative metalloprotease [Bifidobacterium animalis subsp. lactis V9] Length = 181 Score = 97.0 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIE 112 EL++ F D I L+ + + PT+V+SFP MLGDIV+ + + Sbjct: 36 ELTITFVDPEPIAELHERWMDLQGPTDVMSFPMDELRPGDERNEPEGMLGDIVICPWVAQ 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH + M GL+R +L Sbjct: 96 QQAQAAGHSTMEEMMLLTIHGVLHLLGYDHHTREQERQMFGLQRQLL 142 >gi|145572770|sp|A0LK95|RRMF_SYNFM RecName: Full=Probable rRNA maturation factor Length = 159 Score = 97.0 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 1/138 (0%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 ++ E + S + ELS++ D + LN YR D T+VLSF Sbjct: 8 EKQSRIETNRRRIKSAANRILNALGFTDAELSILIVDDEEMAGLNSTYRRKDTSTDVLSF 67 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-D 145 P +LGD+V+ + + + G F++ + L++HG LHL+G+DH Sbjct: 68 PMREGEFGDVCEEVLGDVVICAPMAKRMGELHGASFQSVMDLLLVHGILHLVGHDHEQGR 127 Query: 146 KDACVMEGLERSILEDLG 163 +A M +L+ LG Sbjct: 128 GEAARMADKTMELLKMLG 145 >gi|225873317|ref|YP_002754776.1| conserved hypothetical protein TIGR00043 [Acidobacterium capsulatum ATCC 51196] gi|225791778|gb|ACO31868.1| conserved hypothetical protein TIGR00043 [Acidobacterium capsulatum ATCC 51196] Length = 202 Score = 97.0 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 4/128 (3%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA--FASSDGCS 97 + + + + ++S++ T +I N E+RG +KPT+VLSFP A Sbjct: 21 LELFLEQAIRAVKLRGDVSVLLTGDKQIRRWNREFRGKNKPTDVLSFPAAPLDGPDGPIP 80 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 + + GD+ ++ E + +A L L++HG LHL GYDH D M LE+ Sbjct: 81 APIAGDLAISVETADRQAAEHRHTLIEELKVLLLHGTLHLAGYDHETDN--GEMARLEQR 138 Query: 158 ILEDLGIN 165 + LG+ Sbjct: 139 LRIKLGLK 146 >gi|309379621|emb|CBX21792.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 171 Score = 97.0 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 82/178 (46%), Gaps = 16/178 (8%) Query: 1 MSVKKVNLPRLDLQ-----IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIV 55 M K P L LQ + ENA +L + + F + + + GY Sbjct: 1 MKRAK-KYPFLTLQRQRFHLNFENA--SSAANLPSKHD--FYRWAWSALKSGY----RRA 51 Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS--SLMLGDIVLAYEIIEI 113 ++ L+ D N +YRG D TNVLSF C + GD+++ +++ Sbjct: 52 DIGLILLDEEAARAYNRDYRGKDYATNVLSFALNEGEILPCQVSEKLYGDLIICPQVVLK 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY D Sbjct: 112 EAAEQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAEIMEAEEIRLMRAAGYPNPYRED 169 >gi|297588409|ref|ZP_06947052.1| probable metal-dependent hydrolase [Finegoldia magna ATCC 53516] gi|297573782|gb|EFH92503.1| probable metal-dependent hydrolase [Finegoldia magna ATCC 53516] Length = 153 Score = 96.6 bits (239), Expect = 9e-19, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 11/161 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +QI+ + + L + E I + ++ E+SL F I+ L Sbjct: 1 MIIQISNRQDYFQIDDELTSDIESSIK------ICLIQELNDDNYEVSLSFVSEEEIKEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YR D T+VLSFP + +LGDI++ + +A + +V+L+ Sbjct: 55 NRDYRNKDSVTDVLSFPLEDDFQIQTN--LLGDIIICCKRAVEQAKEYNHSIKREIVYLV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +H HLLGYDH+D+ D +M E+S L+++GI Y+ + Sbjct: 113 VHSMFHLLGYDHIDESDKIIMRNKEKSALKEIGI---YKDE 150 >gi|313668982|ref|YP_004049266.1| hypothetical protein NLA_17020 [Neisseria lactamica ST-640] gi|313006444|emb|CBN87907.1| conserved hypothetical protein [Neisseria lactamica 020-06] Length = 209 Score = 96.6 bits (239), Expect = 9e-19, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 82/178 (46%), Gaps = 16/178 (8%) Query: 1 MSVKKVNLPRLDLQ-----IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIV 55 M K P L LQ + ENA +L + + F + + + GY Sbjct: 39 MKRAK-KYPFLTLQRQRFHLNFENA--SSAANLPSKHD--FYRWAWSALKSGY----RRA 89 Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS--SLMLGDIVLAYEIIEI 113 ++ L+ D N +YRG D TNVLSF C + GD+++ +++ Sbjct: 90 DIGLILLDEEAARAYNRDYRGKDYATNVLSFALNEGEILPCQVSEKLYGDLIICPQVVLK 149 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY D Sbjct: 150 EAAEQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAEIMEAEEIRLMRAAGYPNPYRED 207 >gi|260583649|ref|ZP_05851397.1| metalloprotease [Granulicatella elegans ATCC 700633] gi|260158275|gb|EEW93343.1| metalloprotease [Granulicatella elegans ATCC 700633] Length = 161 Score = 96.6 bits (239), Expect = 9e-19, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 11/132 (8%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM--- 100 + Y E + F S RI +N ++R IDK T+V+SF D Sbjct: 26 FASDYLHYPENRECCISFVSSERIREINRDFRNIDKVTDVISFALDDEDEDMDPIKNFMA 85 Query: 101 --------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 +GDI+++ + + +A G E L L +HGFLHL GYDH +++ M Sbjct: 86 SDENFVTSIGDIIISVDRAKEQAEEYGHSLERELGFLALHGFLHLNGYDHQTEEEEKEMT 145 Query: 153 GLERSILEDLGI 164 GL+ IL G+ Sbjct: 146 GLQTEILTAYGL 157 >gi|289423899|ref|ZP_06425692.1| putative metalloprotease [Peptostreptococcus anaerobius 653-L] gi|289155676|gb|EFD04348.1| putative metalloprotease [Peptostreptococcus anaerobius 653-L] Length = 158 Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 6/154 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I ++ +I + + V ++ L + Y ++ E+SL F D+ I LN Sbjct: 1 MEIIFDDRQTYKKID-EDILDKVERVMLAVLDYEDY---DDNYEVSLSFVDNEEIRNLNR 56 Query: 73 EYRGIDKPTNVLSFPT--AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 E+R ID+ T+VLSFP LGDIV++ + + +A E + L+ Sbjct: 57 EFRNIDRVTDVLSFPMLSDDEFDIEYEVESLGDIVISIQRADEQAEEFDHSLEREICFLV 116 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 H HLLGYDH+++++A M E +L L I Sbjct: 117 CHSMFHLLGYDHMEEEEAKDMHRREEEVLNGLDI 150 >gi|167972975|ref|ZP_02555252.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|167973948|ref|ZP_02556225.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|167975657|ref|ZP_02557934.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|167988132|ref|ZP_02569803.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|168362746|ref|ZP_02695920.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195867954|ref|ZP_03079951.1| putative metalloprotease [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273580|ref|ZP_03206116.1| putative metalloprotease [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554156|ref|YP_002284937.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550362|ref|ZP_03771311.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551596|ref|ZP_03772542.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|226702100|sp|B5ZBZ7|RRMF_UREU1 RecName: Full=Probable rRNA maturation factor gi|171903176|gb|EDT49465.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209105|gb|EDU06148.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019077|gb|EDU57117.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998095|gb|EDU67192.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659878|gb|EDX53258.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660350|gb|EDX53610.1| putative metalloprotease [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198250100|gb|EDY74880.1| putative metalloprotease [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541657|gb|ACI59886.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379411|gb|EEH01776.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379516|gb|EEH01878.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 155 Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 5/141 (3%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 + + F + + + K KE E F D I+ +N +YR D T+V Sbjct: 10 KSVFNDEIYLQRFEQIANLISIKLNIDKERFFEC--HFVDEKTIQEINRDYRNKDYITDV 67 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +SF + +LG++ + Y+ + +A G FE L L HG LHLLGYDH+ Sbjct: 68 ISFAFDDGEII---TPLLGEMYICYQKVVNQAKEFGHSFERELCFLFTHGLLHLLGYDHI 124 Query: 144 DDKDACVMEGLERSILEDLGI 164 + ++ +M GL+ IL +L I Sbjct: 125 EVEEEKIMFGLQDEILNELNI 145 >gi|71903040|ref|YP_279843.1| putative metalloprotease [Streptococcus pyogenes MGAS6180] gi|71802135|gb|AAX71488.1| hypothetical metal-binding protein [Streptococcus pyogenes MGAS6180] Length = 182 Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 26/176 (14%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + + + +++ E EI + + L + E+S+ F + Sbjct: 13 LTINLMYIEMIDETGQVSQEI---------MEQTLDLLNFAAQKTGKEEKEMSVTFVTNE 63 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAY 108 R LN EYR D+PT+V+S + S +G++ ++ Sbjct: 64 RSHELNLEYRDTDRPTDVISLEYKPETPILFSQEDFAADPSLAEMMAEFDAYIGELFISI 123 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + ++ G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 124 DKAREQSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEILTAYGL 179 >gi|158320283|ref|YP_001512790.1| hypothetical protein Clos_1248 [Alkaliphilus oremlandii OhILAs] gi|166977843|sp|A8MG66|RRMF_ALKOO RecName: Full=Probable rRNA maturation factor gi|158140482|gb|ABW18794.1| protein of unknown function UPF0054 [Alkaliphilus oremlandii OhILAs] Length = 151 Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 5/153 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 +++ ++N D + + KAV + Y E E+SL F D+ I+ LN Sbjct: 1 MELLIDNR--QDRYEITDALIELINKAVEACL--IYEGWEIDYEVSLSFVDNQEIQALNH 56 Query: 73 EYRGIDKPTNVLSFPTAFASSD-GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YRG D T+VLSFP + +LGDIV++ E +A FE + L++ Sbjct: 57 TYRGKDYATDVLSFPLIEENQGLDLEEKLLGDIVISVEKAAEQAKEYNHSFEREMGFLVV 116 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 H HL+GYDH D+ M E ++L + + Sbjct: 117 HSMFHLMGYDHDHDEATADMRKREEAVLTAINL 149 >gi|300813825|ref|ZP_07094130.1| translation metalloprotein YbeY [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512012|gb|EFK39207.1| translation metalloprotein YbeY [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 146 Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 3/113 (2%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + +S+ F D + I+ LN +YR +DK T+VLSFP D ++LGDIV+ + Sbjct: 35 DKEYYVSVSFVDDNEIKNLNRDYRNVDKVTDVLSFPMDEEYEDK---IILGDIVINMARV 91 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G L +L +H LHLLGYDH++++D +M E+ I++ L I Sbjct: 92 LSQAKEFGHSNRRELSYLCVHSTLHLLGYDHIEEEDRIIMRAKEKEIMDKLKI 144 >gi|298252735|ref|ZP_06976529.1| metal-dependent hydrolase [Gardnerella vaginalis 5-1] gi|297533099|gb|EFH71983.1| metal-dependent hydrolase [Gardnerella vaginalis 5-1] Length = 188 Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 13/152 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E +W + + + + + + +LS+ F D I L Sbjct: 1 MSIEVMNET-VWNIDAKIFSDLGMWVLQQMKVSTHS---------DLSITFVDPEPIACL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 + + ++ PT+V+SFP + + S MLGD+V+ + + +A G ++ Sbjct: 51 HERWMNLEGPTDVMSFPMDELTPGSDEKVSEGMLGDLVICPWVAQQQALAAGHSTMEEML 110 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L IHG LHLLGYDH ++ M GL+R ++ Sbjct: 111 LLTIHGILHLLGYDHTTPEEEKQMFGLQRQLM 142 >gi|257865831|ref|ZP_05645484.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257872166|ref|ZP_05651819.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257875459|ref|ZP_05655112.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257799765|gb|EEV28817.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257806330|gb|EEV35152.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257809625|gb|EEV38445.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 158 Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 10/132 (7%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------ 97 + G+ E+S+ F D+ I+ +N EYRG D PT+V+SF + + S Sbjct: 26 FAAGHLELPEDTEMSVTFMDNAAIQEINREYRGKDMPTDVISFAFEEETDEELSIIFDEA 85 Query: 98 ----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 LGDI+++ E + +A G ++ L L +HGFLH+ GYDH+ +D M G Sbjct: 86 LEELPRDLGDIMISIERAKEQAAEYGHTYDRELGFLALHGFLHINGYDHMTPEDEKEMFG 145 Query: 154 LERSILEDLGIN 165 L++ IL+ G+ Sbjct: 146 LQKEILDAYGLK 157 >gi|171780164|ref|ZP_02921068.1| hypothetical protein STRINF_01952 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281512|gb|EDT46947.1| hypothetical protein STRINF_01952 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 165 Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E +EI +TL + FA + E+++ F + R L Sbjct: 1 MYVEMIDETGQVSEEIKNQTLDLLQFAA---------EKTGKENKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S S S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPESDLTFSEEDLAENPELAEMLDEFDAYIGELFISVDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE + L++HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 112 QAKEYGHSFEREMGFLVVHGFLHINGYDHYTPEEEKEMFTLQEEILTAYGLK 163 >gi|50913759|ref|YP_059731.1| putative metalloprotease [Streptococcus pyogenes MGAS10394] gi|71910201|ref|YP_281751.1| metalloprotease [Streptococcus pyogenes MGAS5005] gi|94988019|ref|YP_596120.1| putative metalloprotease [Streptococcus pyogenes MGAS9429] gi|94989898|ref|YP_597998.1| putative metalloprotease [Streptococcus pyogenes MGAS10270] gi|94991905|ref|YP_600004.1| putative metalloprotease [Streptococcus pyogenes MGAS2096] gi|94993783|ref|YP_601881.1| metalloprotease [Streptococcus pyogenes MGAS10750] gi|50902833|gb|AAT86548.1| Hypothetical Metal-Binding Protein [Streptococcus pyogenes MGAS10394] gi|71852983|gb|AAZ51006.1| hypothetical metal-binding protein [Streptococcus pyogenes MGAS5005] gi|94541527|gb|ABF31576.1| hypothetical metal-binding protein [Streptococcus pyogenes MGAS9429] gi|94543406|gb|ABF33454.1| hypothetical metal-binding protein [Streptococcus pyogenes MGAS10270] gi|94545413|gb|ABF35460.1| hypothetical metal-binding protein [Streptococcus pyogenes MGAS2096] gi|94547291|gb|ABF37337.1| hypothetical metal-binding protein [Streptococcus pyogenes MGAS10750] Length = 182 Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 26/176 (14%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + + + +++ E EI + + L + E+S+ F + Sbjct: 13 LTINLMYIEMIDETGQVSQEI---------MEQTLDLLNFAAQKTGKEEKEMSVTFVTNE 63 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAY 108 R LN EYR D+PT+V+S + S +G++ ++ Sbjct: 64 RSHELNLEYRDTDRPTDVISLEYKPETPILFSQEDLAADPSLAEMMAEFDAYIGELFISI 123 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + ++ G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 124 DKAREQSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEILTAYGL 179 >gi|21909871|ref|NP_664139.1| putative metalloprotease [Streptococcus pyogenes MGAS315] gi|21904058|gb|AAM78942.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315] Length = 175 Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 26/176 (14%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + + + +++ E EI + + L + E+S+ F + Sbjct: 6 LTINLMYIEMIDETGQVSQEI---------MEQTLDLLNFAAQKTGKEEKEMSVTFVTNE 56 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAY 108 R LN EYR D+PT+V+S + S +G++ ++ Sbjct: 57 RSHELNLEYRDTDRPTDVISLEYKPETPILFSQEDLAADPSLAEMMAEFDAYIGELFISI 116 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + ++ G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 117 DKAREQSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEILTAYGL 172 >gi|284030364|ref|YP_003380295.1| hypothetical protein Kfla_2422 [Kribbella flavida DSM 17836] gi|283809657|gb|ADB31496.1| protein of unknown function UPF0054 [Kribbella flavida DSM 17836] Length = 158 Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 16/156 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++++ E+ + D L L ELS+ D + Sbjct: 1 MNVEVNNESGVEIDAHGLMRLSR----------FVMSSLRLHPECELSIKLVDEDTMARY 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGDIVLAYEIIEIEANVLGKEFEN 124 + E+ + PT+V+S+P + LGDI L + + G Sbjct: 51 HVEFLDLPGPTDVMSWPMDELRPGSDNDDAEPPLGHLGDIALCPTVAAAQGAKAGHGTWA 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 L L +HG LHLLGYDH + + M ++ +LE Sbjct: 111 ELELLTVHGILHLLGYDHAEPAEKAEMWDVQGRLLE 146 >gi|163791431|ref|ZP_02185840.1| hypothetical protein CAT7_03124 [Carnobacterium sp. AT7] gi|159873295|gb|EDP67390.1| hypothetical protein CAT7_03124 [Carnobacterium sp. AT7] Length = 158 Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 10/132 (7%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA----------SS 93 + + E+S+ F D+ I+ +N YRG D+PT+V+SF Sbjct: 26 FAGKHIELPKDTEMSVTFVDNENIQKINKTYRGKDQPTDVISFAIEDEVEDELMINFDEL 85 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 D +GDI+++ + +A F+ L L +HGFLHL GYDH++ +D M G Sbjct: 86 DEPMPRNIGDIIISVDKTASQAKEYNHSFDRELGFLALHGFLHLNGYDHMNPEDEKEMFG 145 Query: 154 LERSILEDLGIN 165 L++ ILE G+ Sbjct: 146 LQKEILEAYGLK 157 >gi|225567934|ref|ZP_03776959.1| hypothetical protein CLOHYLEM_04007 [Clostridium hylemonae DSM 15053] gi|225163222|gb|EEG75841.1| hypothetical protein CLOHYLEM_04007 [Clostridium hylemonae DSM 15053] Length = 167 Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 17/155 (10%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E L CE + K + Y +++L+ T + +I+ +N E+RGID+PT+VL Sbjct: 13 ETVLPIPCEELARKVAEEALD--YTGCPYEAQVNLLLTTNLQIQEMNEEFRGIDRPTDVL 70 Query: 85 SFPTAFAS---------------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 SFP A L+LGDIV++ + + +A G + L Sbjct: 71 SFPMAEYEHPGDFGCLKEQEDCFDPESGELLLGDIVISKDKVISQAEEFGHSLKREYAFL 130 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 I H LHL GYDH+++K+ ME +R IL L I Sbjct: 131 IAHSMLHLTGYDHMEEKERLDMEAKQREILNRLNI 165 >gi|6523485|emb|CAB62265.1| YbeY protein [Salmonella typhimurium] Length = 123 Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 70/136 (51%), Gaps = 13/136 (9%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A EN L E F + + +I + + E+++ D Sbjct: 1 MSQVILDLQLACEN-----HAGLPD--EAQFQRWLDGVIPQF----QEEAEVTIRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP + G +LGD+++ +++E EA K E H Sbjct: 50 ESHDLNLTYRGKDKPTNVLSFPFE--APAGIEMPLLGDLIICRQVVEQEAQEQSKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYD 141 H+++HG LHLLGYD Sbjct: 108 WAHMVVHGSLHLLGYD 123 >gi|152992855|ref|YP_001358576.1| metalloprotease [Sulfurovum sp. NBC37-1] gi|172048740|sp|A6Q9R0|RRMF_SULNB RecName: Full=Probable rRNA maturation factor gi|151424716|dbj|BAF72219.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 147 Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 44/111 (39%), Positives = 62/111 (55%), Gaps = 3/111 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC-SSLMLGDIVLAYEIIEIE 114 E+ L+ TD+ I+ LN EYR D PT+VLSFP ++ + LG IV++ + + Sbjct: 31 EIELIITDNENIQELNREYRDRDNPTDVLSFPLETPFTEQSVFDIPLGTIVISADFVRER 90 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 A G ++ L L IHG LHLLGYDH D+ M ER I+E+ G+ Sbjct: 91 AKTYGHTEQDELKLLFIHGLLHLLGYDHETDE--GEMRQKEREIIEEFGLP 139 >gi|289178678|gb|ADC85924.1| Hypothetical metal-binding protein [Bifidobacterium animalis subsp. lactis BB-12] Length = 193 Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIE 112 EL++ F D I L+ + + PT+V+SFP MLGDIV+ + + Sbjct: 48 ELTITFVDPEPIAELHERWMDLQGPTDVMSFPMDELRPGDERNEPEGMLGDIVICPWVAQ 107 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH + M GL+R +L Sbjct: 108 QQAQAAGHSTMEEMMLLTIHGVLHLLGYDHHTREQERQMFGLQRQLL 154 >gi|320547279|ref|ZP_08041571.1| metalloprotease [Streptococcus equinus ATCC 9812] gi|320448083|gb|EFW88834.1| metalloprotease [Streptococcus equinus ATCC 9812] Length = 165 Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E +EI +TL + FA E+++ F + R L Sbjct: 1 MYVEMIDETGQVPEEIKNQTLDLLQFAA---------EKTGNENKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S S S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPESDLSFSEEDLAENPELAEMLDEFDAYIGELFISVDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEILTAYGLK 163 >gi|168215645|ref|ZP_02641270.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens NCTC 8239] gi|182382067|gb|EDT79546.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens NCTC 8239] Length = 168 Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 21/167 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N ++ + + +S ++ + + E+SLVF D+ I +N E Sbjct: 2 IFIDNR--QNKFEVTEELTKKLEEVISFVLKEEKV--KEDCEVSLVFVDNEEIRGINNET 57 Query: 75 RGIDKPTNVLSFPTAFASSDG-----------------CSSLMLGDIVLAYEIIEIEANV 117 RGID+ T+VLSFP D L+LGDIVL+ E + ++ Sbjct: 58 RGIDRATDVLSFPMIDYPEDKVYKDVYLEHEFDKCYFDEDELILGDIVLSLERTKEQSIE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 FE +L+ H LHLLGYDH+++++ M G E +L L I Sbjct: 118 FNHSFEREACYLVTHSVLHLLGYDHMEEEEKARMRGREEELLGKLNI 164 >gi|87310535|ref|ZP_01092664.1| hypothetical protein DSM3645_07710 [Blastopirellula marina DSM 3645] gi|87286756|gb|EAQ78661.1| hypothetical protein DSM3645_07710 [Blastopirellula marina DSM 3645] Length = 165 Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 8/135 (5%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 + +A++ + + E+S+ D I +N + D PT+V++F + Sbjct: 22 DEAVRQAIAAVFAGESI---EAYEVSVALVDDAEIHEVNRRFLQHDYPTDVVTFNLSADD 78 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 L+ G+IV++ + EA ++ + +IHG LHL+GYD +D+D M Sbjct: 79 D-----LLEGEIVISCQYAAAEAEKYQWPAKHETLLYVIHGALHLVGYDDHEDEDRLTMR 133 Query: 153 GLERSILEDLGINDP 167 LER LE +G+ P Sbjct: 134 RLERVYLEQVGLEPP 148 >gi|218282278|ref|ZP_03488577.1| hypothetical protein EUBIFOR_01159 [Eubacterium biforme DSM 3989] gi|218216746|gb|EEC90284.1| hypothetical protein EUBIFOR_01159 [Eubacterium biforme DSM 3989] Length = 151 Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 10/155 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ I + NA + E + +A L KG LS+++ +I + Sbjct: 1 MEI-IFINNAKDRSVYRYKKDFENILERACQVLERKG------DWSLSVIYVTPEQIHEI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG---CSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 N +YR +D+ T+V+SF SD LGDI + + I +A+ G Sbjct: 54 NRDYRNVDRATDVISFAIQDDMSDMLVDEDQYELGDIFINVQAIRDQASAYGHSIRREAC 113 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L HG LHL+GYDH+ ++D VM L+ IL++L Sbjct: 114 FLFCHGLLHLMGYDHMKEEDEKVMFALQDEILDEL 148 >gi|118443989|ref|YP_878555.1| metalloprotease [Clostridium novyi NT] gi|145572747|sp|A0Q1Q3|RRMF_CLONN RecName: Full=Probable rRNA maturation factor gi|118134445|gb|ABK61489.1| conserved hypothetical protein [Clostridium novyi NT] Length = 166 Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 21/168 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N D+I + + + + + E+S++ D+ I+ +N E Sbjct: 2 IYIDNR--QDKIKIDEKTLNTLDEIIKYALKEEEVYVN--TEVSVILIDNDTIKEINKET 57 Query: 75 RGIDKPTNVLSFPTAFASSDG-----------------CSSLMLGDIVLAYEIIEIEANV 117 R IDK T+VLSFP L+LGDIVL+ E E ++ Sbjct: 58 RDIDKVTDVLSFPMLDYPKGKTYKEVYKDYEFDASYLDEGELVLGDIVLSLERAEEQSKE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G F + +L IH LHLLGYDH++D + +M E IL I Sbjct: 118 FGHSFLREVCYLTIHSVLHLLGYDHMEDDEKAIMRKREEEILNKFSIK 165 >gi|289523170|ref|ZP_06440024.1| putative metalloprotease [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503713|gb|EFD24877.1| putative metalloprotease [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 166 Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 9/158 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVF---AKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 +++ + V + D + E K +S + +E+SL R+ Sbjct: 1 MNINLDVNDEELRDFEITDKMLEEFKGLSDKIISQELRTSRLDPHVSIEISLTLLGPERM 60 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFA------SSDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 + LN +RGID+PT+VLSFP + + LGDIV+ ++ A VLGK Sbjct: 61 QELNKRHRGIDEPTDVLSFPLWEEEGTFCMPEEIAGEVSLGDIVICPYVVAENARVLGKN 120 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 E L + +HG LHLLGYDH ++ +M + L Sbjct: 121 PEEELKLIYVHGLLHLLGYDHATLEEEAIMWKKQEEYL 158 >gi|282882469|ref|ZP_06291090.1| putative metalloprotease [Peptoniphilus lacrimalis 315-B] gi|281297611|gb|EFA90086.1| putative metalloprotease [Peptoniphilus lacrimalis 315-B] Length = 146 Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 3/112 (2%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 +S+ F D + I+ LN +YR +DK T+VLSFP D ++LGDIV+ + Sbjct: 36 KEYYVSVSFVDDNEIKNLNRDYRNVDKVTDVLSFPMDEEYEDK---IILGDIVINMARVL 92 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G L +L +H LHLLGYDH++++D +M E+ I++ L I Sbjct: 93 SQAKEFGHSNRRELSYLCVHSTLHLLGYDHIEEEDRIIMRAKEKEIMDKLKI 144 >gi|227510286|ref|ZP_03940335.1| metal-dependent hydrolase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189938|gb|EEI70005.1| metal-dependent hydrolase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 161 Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 19/167 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL+I E + E + ++ + Y + E+S+ ++ I + Sbjct: 1 MDLEIYD-----KTEKGISEKDEKMIRDVLN--FAGSYIHLADNTEMSVTLVNNDEIHKI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL------------MLGDIVLAYEIIEIEANVL 118 N EYRG+D+ T+V+SF + D + +GDI ++ + + +A+ L Sbjct: 54 NREYRGVDRATDVISFAIEDEAEDDDFPIVMDEDMQESIPENIGDIFVSVDKVAEQADYL 113 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G F+ L L++HGFLHL GYDH++ DA +M L++ IL G+ Sbjct: 114 GHSFQRELGFLVVHGFLHLNGYDHMEKADADIMFPLQKEILNAYGLK 160 >gi|261364225|ref|ZP_05977108.1| putative metalloprotease [Neisseria mucosa ATCC 25996] gi|288567840|gb|EFC89400.1| putative metalloprotease [Neisseria mucosa ATCC 25996] Length = 171 Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 16/178 (8%) Query: 1 MSVKKVNLPRLDLQ-----IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIV 55 M K P L LQ + ENA + L + E F + + Y Sbjct: 1 MKRAK-KYPFLSLQRQRFCLNFENA--STAVDLPS--ERDFYRWAWAALKSEY----RRT 51 Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEI 113 ++SL+ D N +YRG D TNVLSF D S + GD+++ +++ Sbjct: 52 DISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPDQVSDDLCGDLIICPQVVLK 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL +HG LHL+GYDH+++ +A ME LE +++ G +PY+ D Sbjct: 112 EAAEQGKTAEQHFAHLTMHGTLHLMGYDHIEEAEAEEMEALEIRLMQAAGYPNPYQED 169 >gi|296112099|ref|YP_003622481.1| hypothetical protein LKI_09865 [Leuconostoc kimchii IMSNU 11154] gi|295833631|gb|ADG41512.1| hypothetical protein LKI_09865 [Leuconostoc kimchii IMSNU 11154] Length = 160 Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 18/166 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL I + + + A+ N S + + E+S+ F ++ I+ Sbjct: 1 MDLAIIDQTS------KGVSQYHQDLVNAILN-FSGTFLKLPDNTEMSVTFVNNDEIQQY 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL----------MLGDIVLAYEIIEIEANVLGK 120 N +YRG+DKPT+V+SF D +GDI+++ ++I +A LG Sbjct: 54 NRQYRGVDKPTDVISFAIEEGEDDFDILPDQEWANDIAKNIGDILVSVDVIASQATYLGH 113 Query: 121 EFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGIN 165 +E L L++HGFLHL GYDH+ D + M L+R IL+D G+ Sbjct: 114 SYERELGFLVVHGFLHLNGYDHMLGDAEEKEMFDLQRKILDDYGLK 159 >gi|206895766|ref|YP_002246845.1| putative metalloprotease [Coprothermobacter proteolyticus DSM 5265] gi|206738383|gb|ACI17461.1| putative metalloprotease [Coprothermobacter proteolyticus DSM 5265] Length = 148 Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 20/156 (12%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D+ G E+ + + + L+SK ++ +S+ F + I Sbjct: 1 MIDV---------GKEVPVPRGAIKLTKNTLKFLLSKFGLENKD---VSVYFCNERTIID 48 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YR ++PT+VLSF LG+I++ + +A G +++ L Sbjct: 49 LNTQYRFNEEPTDVLSF--------TGEGDFLGEIIICVPVALRQAEESGVDWQVEFAML 100 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 I+H FLHLLGYD ++ M ++ +L++LG Sbjct: 101 IVHSFLHLLGYDDETEEGFAEMVEVQNKLLKELGYE 136 >gi|308069930|ref|YP_003871535.1| hypothetical protein PPE_03178 [Paenibacillus polymyxa E681] gi|305859209|gb|ADM70997.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 165 Score = 96.2 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 14/158 (8%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 W +E + + E + + L G E++L F + +I LN +YRGID+P Sbjct: 6 AWNNEQNDMVINESLITLLNTLLEEAGKVEGVTDGEVALTFVNDEQIHELNRDYRGIDRP 65 Query: 81 TNVLSFPT--------------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 T+VLSF +S +LGDI+++ + + ++ G E + Sbjct: 66 TDVLSFAMKETLDEELEIIYEPNEENSLNDVPDVLGDIIISVQTAQAQSEEYGHSIEREI 125 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L +HGFLHLLGYDH DD M G + ++L G+ Sbjct: 126 GFLFVHGFLHLLGYDHQDDVSEAEMMGKQEAVLAQAGL 163 >gi|290580022|ref|YP_003484414.1| hypothetical protein SmuNN2025_0496 [Streptococcus mutans NN2025] gi|254996921|dbj|BAH87522.1| hypothetical protein [Streptococcus mutans NN2025] Length = 166 Score = 96.2 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E +EI +TL + FA + E+++ F + R L Sbjct: 3 MYIEMIDETNQVSEEIKNQTLDILEFAA---------QRTGKEDKEMAVTFVTNERSHEL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N +YR ++PT+V+S SS +G++ ++ + Sbjct: 54 NLKYRDTNRPTDVISLEYKPESSLSFDEEDLADDPDLAEVLTEFDAYIGELFISVDKARE 113 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE + L +HGFLH+ GYDH ++ M L+ IL+ G+ Sbjct: 114 QAQEYGHSFEREMGFLAVHGFLHINGYDHYTPQEEKEMFSLQEEILDAYGLK 165 >gi|153953547|ref|YP_001394312.1| metalloprotease [Clostridium kluyveri DSM 555] gi|219854169|ref|YP_002471291.1| hypothetical protein CKR_0826 [Clostridium kluyveri NBRC 12016] gi|189040636|sp|A5N6N3|RRMF_CLOK5 RecName: Full=Probable rRNA maturation factor gi|254806620|sp|B9E052|RRMF_CLOK1 RecName: Full=Probable rRNA maturation factor gi|146346428|gb|EDK32964.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219567893|dbj|BAH05877.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 164 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 21/164 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N D+I + E + ++ + + E+S+VF D+ I+ +N E Sbjct: 2 IFLDNR--QDKIEVTDKLEKIVTSSIECALKEEKV--NFPCEISVVFVDNENIKDINREN 57 Query: 75 RGIDKPTNVLSFPTAFASSD-----------------GCSSLMLGDIVLAYEIIEIEANV 117 R ID+ T+VLSFP +L+LGDIV++ E E ++ Sbjct: 58 RNIDRVTDVLSFPMLEYPESKVFKEVYLNYKFPEYDMNDGNLVLGDIVVSLEKCEEQSRE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 G F +LI+H LHLLGYDH +D D +M E IL+ Sbjct: 118 FGHSFFRETCYLIVHSVLHLLGYDHTEDSDKKIMREREEYILKK 161 >gi|42519247|ref|NP_965177.1| hypothetical protein LJ1323 [Lactobacillus johnsonii NCC 533] gi|62901443|sp|Q74IY8|RRMF_LACJO RecName: Full=Probable rRNA maturation factor gi|41583535|gb|AAS09143.1| hypothetical protein LJ_1323 [Lactobacillus johnsonii NCC 533] Length = 175 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE++ + + +SNL+ +K KEN E+S+ F S +I +N +YRG Sbjct: 5 DISFNDEVNFLKDSDKDWITWISNLLLSAKKEIHKENTQEMSINFVSSKKIHEINKKYRG 64 Query: 77 IDKPTNVLSFPTAFA---------SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF S D +GD+ L E+I+ + F Sbjct: 65 KDRPTDVISFAIEDGLDEDFISAFSDDPDFVEDIGDLFLCPEVIKRHSVEYETGFNREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HG+LHL GYDH++D +A VM G++ +L + G+ Sbjct: 125 YTLVHGYLHLNGYDHIEDDEAKVMFGIQGKVLREYGLP 162 >gi|24379999|ref|NP_721954.1| putative metalloprotease [Streptococcus mutans UA159] gi|29428194|sp|Q8DSY7|RRMF_STRMU RecName: Full=Probable rRNA maturation factor gi|24377987|gb|AAN59260.1|AE014993_4 conserved hypothetical protein [Streptococcus mutans UA159] Length = 164 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E +EI +TL + FA + E+++ F + R L Sbjct: 1 MYIEMIDETNQVSEEIKNQTLDILEFAA---------QKTGKEDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N +YR ++PT+V+S SS +G++ ++ + Sbjct: 52 NLKYRDTNRPTDVISLEYKPESSLSFDEEDLADDPDLAEVLTEFDAYIGELFISVDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE + L +HGFLH+ GYDH ++ M L+ IL+ G+ Sbjct: 112 QAQEYGHSFEREMGFLAVHGFLHINGYDHYTPQEEKEMFSLQEEILDAYGLK 163 >gi|288574806|ref|ZP_06393163.1| protein of unknown function UPF0054 [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570547|gb|EFC92104.1| protein of unknown function UPF0054 [Dethiosulfovibrio peptidovorans DSM 11002] Length = 165 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 11/163 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFV--KENIVELSLVFTDSHRIE 68 + L+I + N GD L E V + +S L + + + V +S+ D I Sbjct: 1 MKLEIGISNDE-GDPRPSAILDEEVLSLCISQLFDEVWPQWRMRDSVSISIATVDEETIR 59 Query: 69 TLNFEYRGIDKPTNVLSFPTAFA----SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG D T+VLSFP + + L LGD+V+ I+ A + ++ Sbjct: 60 QLNNSYRGCDSSTDVLSFPQWEDGVFSPPEEWTELPLGDVVICTSIVNRNAEERNESYDR 119 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI----LEDLG 163 + ++ H LHLLG+DH + M L+ +E LG Sbjct: 120 EMALMVFHSVLHLLGWDHDTQEKEAAMWSLQEKYRDIAMEKLG 162 >gi|296140455|ref|YP_003647698.1| hypothetical protein Tpau_2761 [Tsukamurella paurometabola DSM 20162] gi|296028589|gb|ADG79359.1| protein of unknown function UPF0054 [Tsukamurella paurometabola DSM 20162] Length = 179 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++ A E+ DE L + EL+++ D + L Sbjct: 1 MSIEFANESGFDVDEAELVA----------VAAFAIAAMDVHPGAELNMLAVDLDTMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFEN 124 + ++ + PT+V+SFP + G LGDIVL + +A G + Sbjct: 51 HVKWMDLPGPTDVMSFPMDELTPGGRPDMVDAGPATLGDIVLCPQFAAEQAEAAGHSTAH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L L +HG LHLLG+DH + ++ M GL+ SIL + Sbjct: 111 ELNVLTVHGVLHLLGFDHAEPEEEREMFGLQDSILAE 147 >gi|222152665|ref|YP_002561840.1| putative metalloprotease [Streptococcus uberis 0140J] gi|254803968|sp|B9DRF7|RRMF_STRU0 RecName: Full=Probable rRNA maturation factor gi|222113476|emb|CAR41204.1| conserved hypothetical protein [Streptococcus uberis 0140J] Length = 166 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E L EI + + L ++ E+S+ F + R L Sbjct: 1 MYIEMIDETGLVSQEI---------MEQTLDLLNFAARKTGKDEKEMSVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S S +G++ ++ + + Sbjct: 52 NLEYRDTDRPTDVISLEYKPESPILFDERDLEENPDLAEMLSEFDAYIGELFISIDKAKE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 112 QAQEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEILTAYGL 162 >gi|224370644|ref|YP_002604808.1| hypothetical protein HRM2_35790 [Desulfobacterium autotrophicum HRM2] gi|223693361|gb|ACN16644.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 155 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 5/144 (3%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 +I L + + +S +++ + + ELS+V TD I LN YRG KPTNVL Sbjct: 11 QIKTPKLSKSQINQKLSKILNALGY---DNHELSVVITDDAHIMALNQTYRGKAKPTNVL 67 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP + + +LGD+V++ E EA+ G + L L+IHG LHL+G+DH Sbjct: 68 SFPMLDSEFTSIAPQLLGDLVISVETAMREADEAGITLDERLSQLMIHGVLHLVGFDHEQ 127 Query: 145 -DKDACVMEGLERSILEDLGINDP 167 + +A ME +L + ++P Sbjct: 128 GEDEAVKMEQRSLELLRFIE-SNP 150 >gi|15606551|ref|NP_213931.1| hypothetical protein aq_1354 [Aquifex aeolicus VF5] gi|6686198|sp|O67367|RRMF_AQUAE RecName: Full=Probable rRNA maturation factor gi|37927359|pdb|1OZ9|A Chain A, Crystal Structure Of Aq_1354, A Hypothetical Protein From Aquifex Aeolicus gi|2983779|gb|AAC07338.1| hypothetical protein aq_1354 [Aquifex aeolicus VF5] Length = 150 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 47/128 (36%), Positives = 62/128 (48%), Gaps = 7/128 (5%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 K +S N VELS+ TD I LN YR DKPT+VLSFP Sbjct: 25 IEKWAELALSALGL---NNVELSVYITDDQEIRELNKTYRKKDKPTDVLSFPMGEE---F 78 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGL 154 +LGD+V++ + E +A LG E + LI+HG +HLLGYDH ++ L Sbjct: 79 GGYKILGDVVISQDTAERQARELGHSLEEEVKRLIVHGIVHLLGYDHEKGGEEEKKFREL 138 Query: 155 ERSILEDL 162 E +L L Sbjct: 139 ENYVLSKL 146 >gi|87123560|ref|ZP_01079411.1| hypothetical protein RS9917_06855 [Synechococcus sp. RS9917] gi|86169280|gb|EAQ70536.1| hypothetical protein RS9917_06855 [Synechococcus sp. RS9917] Length = 196 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 2/128 (1%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 +A + L G + L L F D I LN +R K T+VLSF Sbjct: 46 TLLRADTELTCPGPVRTAQAISLGLQFCDDATIAALNGTWRQKPKATDVLSFAALDGDGP 105 Query: 95 GCSSLM--LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 + LGDI+++ + +A G + L L+ HG LHLLG+DH D+ M Sbjct: 106 MPDAPCVELGDIIVSVDTAGRQAMEQGHGLVHELRWLVSHGLLHLLGWDHPDEAQLTAML 165 Query: 153 GLERSILE 160 + +L Sbjct: 166 QCQERLLA 173 >gi|261414960|ref|YP_003248643.1| protein of unknown function UPF0054 [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371416|gb|ACX74161.1| protein of unknown function UPF0054 [Fibrobacter succinogenes subsp. succinogenes S85] Length = 161 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 20/155 (12%) Query: 16 AVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYR 75 +E+ W D+ F L+++ +++V + +N YR Sbjct: 20 NIESFPWKDK----------FEAMARKLLAEEGTENN----VNIVLCTDEFVREMNKNYR 65 Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 G+DK T+VLSF MLG+I +A + ++ +A G F + +I+HG L Sbjct: 66 GLDKVTDVLSFEWHEEIPGEEE--MLGEIYIARDQVKRQAPQYGNSFFAEMKRVIVHGLL 123 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HL GYDH+ D VM E L DPY+ Sbjct: 124 HLSGYDHIKAADRKVMRARECEFLGL----DPYKD 154 >gi|255066351|ref|ZP_05318206.1| putative metalloprotease [Neisseria sicca ATCC 29256] gi|255049561|gb|EET45025.1| putative metalloprotease [Neisseria sicca ATCC 29256] Length = 171 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 55/178 (30%), Positives = 81/178 (45%), Gaps = 16/178 (8%) Query: 1 MSVKKVNLPRLDLQ-----IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIV 55 M K P L LQ + ENA + A+ N + Sbjct: 1 MKRAK-KYPFLSLQRQRFCLNFENASTAANLPSERDFYRWAWAALKN--------EYRRA 51 Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEI 113 ++SL+ D N +YRG D TNVLSF D S + GD+++ +++ Sbjct: 52 DISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPDQFSDELCGDLIICPQVVLK 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL +HG LHL+GYDH+++ +A ME LE +++ G +PY+ D Sbjct: 112 EAAEQGKTAEQHFAHLTMHGTLHLMGYDHIEETEAEEMEALEIRLMQAAGYPNPYQED 169 >gi|13358053|ref|NP_078327.1| hypothetical protein UU490 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|167971447|ref|ZP_02553724.1| conserved hypothetical protein TIGR00043 [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|170762010|ref|YP_001752574.1| hypothetical protein UPA3_0508 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|29428267|sp|Q9PQ00|RRMF_UREPA RecName: Full=Probable rRNA maturation factor gi|189040230|sp|B1AJD0|RRMF_UREP2 RecName: Full=Probable rRNA maturation factor gi|11356818|pir||A82884 conserved hypothetical UU490 [imported] - Ureaplasma urealyticum gi|6899488|gb|AAF30902.1|AE002147_3 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827587|gb|ACA32849.1| conserved hypothetical protein TIGR00043 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|186701087|gb|EDU19369.1| conserved hypothetical protein TIGR00043 [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 155 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 5/141 (3%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 +I L F + + +K K+ E F D I+ +N YR D T+V Sbjct: 10 KKIFNDKLYSQRFKQITDLVSTKLNIDKKRFFEC--HFVDEKTIQEINKNYRNKDYITDV 67 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +SF + +LG++ + Y+ + +A+ FE L L HG LHLLGYDH+ Sbjct: 68 ISFAFDDGEII---TPLLGEMYICYQKVVDQASQFAHSFERELCFLFTHGLLHLLGYDHI 124 Query: 144 DDKDACVMEGLERSILEDLGI 164 +D +M L+ IL +L I Sbjct: 125 KIEDEKIMFALQDEILNELKI 145 >gi|291522236|emb|CBK80529.1| conserved hypothetical protein TIGR00043 [Coprococcus catus GD/7] Length = 166 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 24/172 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I E L E + + ++ + + E+++V T + I + Sbjct: 1 MTVNIDYEADK-----KLDFDYEKIIREVINGALD--FEECPYETEVNVVLTTNDEIAMI 53 Query: 71 NFEYRGIDKPTNVLSFPT-----------------AFASSDGCSSLMLGDIVLAYEIIEI 113 N +YR + KPT+VLSFP + L+LGDI+L+ + I Sbjct: 54 NRDYRDLFKPTDVLSFPMIDYVRPGDFSVLEEGLTEDFFNPESGELILGDIILSVDKIIE 113 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G + L L+ H LHL GYDH+ D++ VME +R IL L + Sbjct: 114 QAASYGHSQQRELGFLVAHSMLHLFGYDHMQDEEREVMEEKQRDILNMLNLK 165 >gi|257869125|ref|ZP_05648778.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|257803289|gb|EEV32111.1| conserved hypothetical protein [Enterococcus gallinarum EG2] Length = 158 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 10/131 (7%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF----------PTAFASSD 94 + Y E+S+ F D+ I+ +N +YR D+PT+V+SF P F Sbjct: 27 AADYLKLPEDTEMSVTFMDNAAIQVINRDYRDKDQPTDVISFALEEETEEELPIIFDDEM 86 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 LGDI+++ E + +A+ G ++ L L +HGFLH+ GYDH+ +D M GL Sbjct: 87 PAMPRNLGDIMISVERAKEQASEYGHSYDRELGFLALHGFLHINGYDHMTPEDEKEMFGL 146 Query: 155 ERSILEDLGIN 165 ++ IL+ G+ Sbjct: 147 QKEILDAYGLK 157 >gi|315303203|ref|ZP_07873860.1| putative metalloprotease [Listeria ivanovii FSL F6-596] gi|313628430|gb|EFR96906.1| putative metalloprotease [Listeria ivanovii FSL F6-596] Length = 161 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 18/168 (10%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + L++ + E E L E + Y + ELSL FT + I Sbjct: 1 MTVLEIDLIDETKELPAEDK--KLVENILQ------FXXDYLKMDQGTELSLTFTTNEGI 52 Query: 68 ETLNFEYRGIDKPTNVLSFP----------TAFASSDGCSSLMLGDIVLAYEIIEIEANV 117 +N +YR D+ T+V+SF +A D + MLGDI+++ E E +A Sbjct: 53 REINRDYRNKDQATDVISFALEELGEGETEIDWADFDLETPKMLGDIIISTEKAEEQAKE 112 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G L L +HG LHLLGYDH++ + +M GL++ +L+ G+ Sbjct: 113 YGHTKARELGFLAVHGLLHLLGYDHMEPDEEKIMFGLQKEVLDAYGLE 160 >gi|329572232|gb|EGG53892.1| translation metalloprotein YbeY [Enterococcus faecalis TX1467] Length = 159 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 19/166 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+ E E E + + G+ E+S+ FTD+ I+ + Sbjct: 1 MDITFIDETEKVPTEEIKE--IENLLQ------FAAGFLEIAEDTEMSVTFTDNAGIQVI 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS-----------SLMLGDIVLAYEIIEIEANVLG 119 N +YRG D PT+V+SF D LGD++++ E +A G Sbjct: 53 NRDYRGKDMPTDVISFALEDEGEDELPIIFDDEELAELPRNLGDLIISTERAAEQAFEYG 112 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 E + L +HGF HL GYDH++ +D M GL++ IL+ G+ Sbjct: 113 HTLEREMGFLAVHGFFHLNGYDHMEPEDEKAMFGLQKEILDAYGLK 158 >gi|218781165|ref|YP_002432483.1| hypothetical protein Dalk_3326 [Desulfatibacillum alkenivorans AK-01] gi|218762549|gb|ACL05015.1| protein of unknown function UPF0054 [Desulfatibacillum alkenivorans AK-01] Length = 127 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 35/111 (31%), Positives = 59/111 (53%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 ELS++ D R+ L+ EY G PTNVL+FP + + ++GD+V+ ++ Sbjct: 15 PDSELSVLIVDGGRMAELHEEYVGKQGPTNVLAFPMTEGPFNEINPEIIGDVVICTDVAA 74 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 EA G + + L+IHG LHL+G+DH + ++ +M+ E + E Sbjct: 75 KEAEDAGVDLYTRALELLIHGILHLVGHDHAEPEETALMQAKEAELFEQFK 125 >gi|318040668|ref|ZP_07972624.1| metal-dependent hydrolase [Synechococcus sp. CB0101] Length = 189 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 14/143 (9%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF--- 86 T + + L ++ ++ L L I LN ++RG PT+VL+F Sbjct: 46 TRISDWLEQMAAELPAE---LQAPAYSLGLSLVGDAEIAELNGDWRGKSGPTDVLAFAAQ 102 Query: 87 --------PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 P +G +L LGDIV++ E +A G L L HG LHLL Sbjct: 103 DDGLDDAPPIPMPDDEGEEALELGDIVISLETAARQAPEHGHSLVEELQFLATHGLLHLL 162 Query: 139 GYDHVDDKDACVMEGLERSILED 161 G+DH DD +M + +L + Sbjct: 163 GWDHPDDASLALMLARQERLLAN 185 >gi|51245457|ref|YP_065341.1| pyridoxal phosphate biosynthetic protein [Desulfotalea psychrophila LSv54] gi|50876494|emb|CAG36334.1| probable pyridoxal phosphate biosynthetic protein [Desulfotalea psychrophila LSv54] Length = 393 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 4/117 (3%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYE 109 N L++VF ++ N YR PTNVLSFP A S + + LGDI+++ + Sbjct: 33 NDHNLNIVFVSDAQMTWFNEHYREKKGPTNVLSFPFAEGSEEFLQQIPVHELGDIIISVD 92 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGIN 165 EA G+ + L L++HG LHL+GYDH +DA +ME E+ +L++ IN Sbjct: 93 TAMREAIEYGQTISHRLNWLMVHGILHLVGYDHERGPEDALLMEDKEQVLLKEYAIN 149 >gi|172056859|ref|YP_001813319.1| hypothetical protein Exig_0822 [Exiguobacterium sibiricum 255-15] gi|229890252|sp|B1YL70|RRMF_EXIS2 RecName: Full=Probable rRNA maturation factor gi|171989380|gb|ACB60302.1| protein of unknown function UPF0054 [Exiguobacterium sibiricum 255-15] Length = 158 Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 7/120 (5%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG-------CSSLMLG 102 E ELS+ F + I+ +N E+RG D+ T+V+SF D ++LG Sbjct: 32 KIEANSELSVTFVTNDEIQQINREWRGKDQATDVISFAMDELGEDEIDFELLEDEPVVLG 91 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 D++++ E +A G FE L L +HGFLHLLGYDH++ D +M + IL Sbjct: 92 DLIISVERCREQAAEYGNHFERELGFLAVHGFLHLLGYDHIEKADEDIMTKRQEEILHHF 151 >gi|254467928|ref|ZP_05081334.1| conserved hypothetical protein TIGR00043 [beta proteobacterium KB13] gi|207086738|gb|EDZ64021.1| conserved hypothetical protein TIGR00043 [beta proteobacterium KB13] Length = 144 Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 43/117 (36%), Positives = 72/117 (61%), Gaps = 6/117 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + E+++ T + + LN YR +KPTN+LSF S +GD+VL ++I+ Sbjct: 30 KKDAEITVRITAASESQELNHHYRNQNKPTNILSFNIESNKSL------IGDLVLCHDIV 83 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 + EA K+ ++H +HL++HGFLHL+G+DH+++KD +ME +E L+ I +PY Sbjct: 84 KKEAKAQNKKIKDHYIHLVLHGFLHLMGHDHINEKDRLIMEKIEIKTLKLFNIQNPY 140 >gi|188996202|ref|YP_001930453.1| protein of unknown function UPF0054 [Sulfurihydrogenibium sp. YO3AOP1] gi|229557463|sp|B2V7H6|RRMF_SULSY RecName: Full=Probable rRNA maturation factor gi|188931269|gb|ACD65899.1| protein of unknown function UPF0054 [Sulfurihydrogenibium sp. YO3AOP1] Length = 152 Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 6/140 (4%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 E++ + + + ++S+ N VE+S+ TD+ RI +N E+RG DKPT+V Sbjct: 14 KEVYSKEITKKFLKDITEKILSELNL---NNVEISITLTDNERIREINKEWRGKDKPTDV 70 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 LSFP G +LGD++++ + +A +G ++ L++HG LHLLGYDH Sbjct: 71 LSFPQDET--IGYKYRLLGDVIISLPYAKAQAEEIGLTLREEVLRLLVHGILHLLGYDHE 128 Query: 144 D-DKDACVMEGLERSILEDL 162 ++DA +M L+ I + L Sbjct: 129 TNEEDAKIMFDLQDKIFDKL 148 >gi|259500585|ref|ZP_05743487.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|302191276|ref|ZP_07267530.1| hypothetical protein LineA_04632 [Lactobacillus iners AB-1] gi|259167969|gb|EEW52464.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] Length = 175 Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 16/167 (9%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRI 67 ++ I+ DE+ + + + LI +K K N E+S+ F D ++I Sbjct: 1 MTEIDISFN-----DEVDFLSDTRKNWKTWIEELILSAKKNIKKTNRQEMSINFVDINKI 55 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGDIVLAYEIIEIEANVL 118 +N YRG D+PT+V+SF + + +GD+ + E++E A Sbjct: 56 HEINKNYRGKDRPTDVISFAIEDGTDNDLFAQFIETPDFVEDIGDLFICPEVVEKHATEY 115 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 F + ++HG+LHL GYDH+ D +A VM G++ +LE+ G+ Sbjct: 116 ETGFYREFGYTLVHGYLHLNGYDHIKDDEAEVMFGIQSKVLEEYGLP 162 >gi|238060558|ref|ZP_04605267.1| metalloprotease [Micromonospora sp. ATCC 39149] gi|237882369|gb|EEP71197.1| metalloprotease [Micromonospora sp. ATCC 39149] Length = 157 Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 19/160 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ + D + + + + ELS++ D + L Sbjct: 1 MSIEIANESGVDVDTDAVLAVARHALDEM----------GVNPLAELSVLLVDIDYMTEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGDIVLAYEIIEIEANVLGKE 121 N + G D PT+VL+FP S D G +LGDIVL E+ +A G Sbjct: 51 NHRWMGGDGPTDVLAFPMDEGSVDHGPGESSAAGGEPALLGDIVLCPEVAAKQAATAGHS 110 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + L L +HG LHLLGYDH + ++ M L+ +L Sbjct: 111 SADELHLLTVHGVLHLLGYDHAEPEEEREMFELQARLLAS 150 >gi|217967710|ref|YP_002353216.1| protein of unknown function UPF0054 [Dictyoglomus turgidum DSM 6724] gi|217336809|gb|ACK42602.1| protein of unknown function UPF0054 [Dictyoglomus turgidum DSM 6724] Length = 142 Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 5/133 (3%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 E V + K F+ ++S+V D +I LN +YRG D PT+VLSF Sbjct: 12 FDKKEEDRVKNFVKEVFKKEGFLPNK-YDISVVLVDDEKIRELNSKYRGKDTPTDVLSFS 70 Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 ++G+I ++ + +I+A K + + L +HG LH+LGYDH +D++ Sbjct: 71 LGKDP----KGRIVGEIYISIDTAKIQAKENNKTLIDEVAFLTLHGLLHILGYDHENDEE 126 Query: 148 ACVMEGLERSILE 160 ME + ++ Sbjct: 127 YEKMEKETKKLIS 139 >gi|304438430|ref|ZP_07398370.1| metal-dependent hydrolase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368513|gb|EFM22198.1| metal-dependent hydrolase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 153 Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 4/146 (2%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 E + + +++ G E+S+ TD I LN +YR +D+PT+V Sbjct: 7 KEPENLDVPQEALDAVRRAVLTVGELYGVMDAEVSVTLTDDAHIHVLNRDYRSVDRPTDV 66 Query: 84 LSFPTAFASS----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 LSF + D ++LGD+V++ E + +A G L L +HG LHLLG Sbjct: 67 LSFALTESEEPAILDAPYGVVLGDLVISLERVAAQAEEYGHSVLRELSFLTVHGMLHLLG 126 Query: 140 YDHVDDKDACVMEGLERSILEDLGIN 165 YDH++++D ME +R +++ LGI Sbjct: 127 YDHIEEEDRVEMEEEQRHVMDVLGIA 152 >gi|145558817|sp|Q48UW8|RRMF_STRPM RecName: Full=Probable rRNA maturation factor Length = 165 Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E EI + + L + E+S+ F + R L Sbjct: 1 MYIEMIDETGQVSQEI---------MEQTLDLLNFAAQKTGKEEKEMSVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S + S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPETPILFSQEDFAADPSLAEMMAEFDAYIGELFISIDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 112 QSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEILTAYGL 162 >gi|11387300|sp|P57517|RRMF_BUCAI RecName: Full=Probable rRNA maturation factor Length = 155 Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 13/163 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + +++Q +N I + + K + K+NI +++ D Sbjct: 1 MKNIIINIQYCCKNN---KNIPKKLYFKKWIQKILCK--------KKNINIITIRIVDEW 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 I+ LNF YR +KPTN+LSFP F + +LGD+VL IIE E+ K E+H Sbjct: 50 EIKKLNFNYRKKNKPTNILSFP--FNKFIKINYKLLGDLVLCKNIIEKESLKYNKSLESH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H+ IHG LHLLGYDH ++K+A +ME LE I+ L P+ Sbjct: 108 WAHITIHGTLHLLGYDHQNNKEADIMERLENKIMLSLNYKKPH 150 >gi|183221474|ref|YP_001839470.1| hypothetical protein LEPBI_I2092 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911561|ref|YP_001963116.1| metal-dependent hydrolase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|189039442|sp|B0SB32|RRMF_LEPBA RecName: Full=Probable rRNA maturation factor gi|238687827|sp|B0SSV4|RRMF_LEPBP RecName: Full=Probable rRNA maturation factor gi|167776237|gb|ABZ94538.1| Metal-dependent hydrolase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779896|gb|ABZ98194.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 154 Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 2/139 (1%) Query: 22 WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 W DE + + ++ + +ELS+ + + +N E RG T Sbjct: 11 WNDESNQSEIFSDPVISNCEKILRFLAPEFLHSLELSIYLVNDSLMAEINEERRGKPATT 70 Query: 82 NVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 +VLSFP +LG++V++ E + +A +G + L++HG LH GYD Sbjct: 71 DVLSFPLYSEHPPI-PVQILGEVVISMETCKKQAMEIGHGLVDEFYRLLVHGILHNFGYD 129 Query: 142 HVD-DKDACVMEGLERSIL 159 H ++DA +M +E L Sbjct: 130 HETNEEDALLMRKMEDECL 148 >gi|125571963|gb|EAZ13478.1| hypothetical protein OsJ_03394 [Oryza sativa Japonica Group] Length = 425 Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 2/111 (1%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 + VE+S++ + + I+ LN E+RG D +LS + + LMLGDIV++ E Sbjct: 29 DKVEVSVLLCNDNFIQNLNKEWRGEDSCIEMLSM-SQYIPDLDVPILMLGDIVISVETAA 87 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD-ACVMEGLERSILEDL 162 +A G + + L + G L LLG+DH + A ME E+ IL+ L Sbjct: 88 RQAEERGHTLLDEVRILAVRGILRLLGFDHQTSHESAVEMEKEEQLILKSL 138 >gi|118586861|ref|ZP_01544295.1| metal-dependent hydrolase [Oenococcus oeni ATCC BAA-1163] gi|118432693|gb|EAV39425.1| metal-dependent hydrolase [Oenococcus oeni ATCC BAA-1163] Length = 169 Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 10/167 (5%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M+ K+ LD+ I +++ + L + V + + + E+S+ Sbjct: 8 MNRKRNRKKMLDV-IVLDDKQKELDNDDAKLVKKVL------AFAFDFMQLKQNYEMSVN 60 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL--MLGDIVLAYEIIEIEANVL 118 F + +I +N EYR D+ T+V+SF + + LGD+ ++ + +A Sbjct: 61 FVNDEKIHQINKEYRNTDRATDVISFALEESDRIHIDGVAEELGDLFISLDHAHAQAEEY 120 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDAC-VMEGLERSILEDLGI 164 + L +L +HGFLHLLGYDH + A M GL+ ILE G+ Sbjct: 121 LHSYNRELAYLAVHGFLHLLGYDHTRSQAAEDEMFGLQDKILEGYGL 167 >gi|220928028|ref|YP_002504937.1| hypothetical protein Ccel_0576 [Clostridium cellulolyticum H10] gi|219998356|gb|ACL74957.1| protein of unknown function UPF0054 [Clostridium cellulolyticum H10] Length = 161 Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 15/162 (9%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I +EN +++ + E + K + + + E++++ D I +N E+ Sbjct: 2 IIIENE--QNKVIVDKKIESLIEKTIKLCMKSEKL--DKDYEVNVLIVDDEEIRGINKEH 57 Query: 75 RGIDKPTNVLSFPT-----------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 R DK T+VLSFP L+LGDI+++ E + +A G FE Sbjct: 58 RDTDKSTDVLSFPMVNFKDGKLISDEGDYDLEMGELILGDIIISAETAQRQAEAYGHSFE 117 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + L H HLLGYDH++ + +M + IL ++G+ Sbjct: 118 REMAFLTAHSCFHLLGYDHMEKNEEEIMFKKQEDILIEIGLP 159 >gi|260903864|ref|ZP_05912186.1| hypothetical protein BlinB_00925 [Brevibacterium linens BL2] Length = 162 Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 13/152 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++ +I+ E D + L E + EL++ D+ + L Sbjct: 1 MNTEISNETDESIDLDEVVALTEYLGQA----------LHMHPGAELAVTMVDATAMAEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFAS---SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 + + ++ PT+V+SFP + + +GDI++ E+ +A+ G + ++ Sbjct: 51 HVTWMDLEGPTDVMSFPMDQLTQGQPGAPTEGQMGDIIICPEVAAAQASSSGHTTMDEVL 110 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L +HGFLHLLGYDH + + M L+R +L Sbjct: 111 LLTVHGFLHLLGYDHGEPAEKEEMFTLQRHLL 142 >gi|160892625|ref|ZP_02073415.1| hypothetical protein CLOL250_00155 [Clostridium sp. L2-50] gi|156865666|gb|EDO59097.1| hypothetical protein CLOL250_00155 [Clostridium sp. L2-50] Length = 170 Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 23/175 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L I E EI + E V + + + E+ ++ TD+ I+T+ Sbjct: 1 MSLNIENEFG----EIRVPD-YEHVIETVIGQALD--FIKCPYECEIYVLLTDNSGIQTI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGC----------------SSLMLGDIVLAYEIIEIE 114 N R ID PT+VLSFP G LMLGDI+++ + + + Sbjct: 54 NNCQRNIDAPTDVLSFPLIDYKEPGDFSVVDGDTCDYFNPESGELMLGDIIISMDRVYEQ 113 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 A L L+ H LHL GYDH+D+++ ME L+ IL + G YE Sbjct: 114 AKSYNHSNTRELAFLVAHSMLHLFGYDHIDEEERKQMEDLQEQILNEKGYTRDYE 168 >gi|326333966|ref|ZP_08200196.1| putative metalloprotease [Nocardioidaceae bacterium Broad-1] gi|325948245|gb|EGD40355.1| putative metalloprotease [Nocardioidaceae bacterium Broad-1] Length = 154 Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 63/157 (40%), Gaps = 14/157 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +I E+ D H+ L + + +L + F D I L Sbjct: 1 MSTEIINESEQEIDVEHVAKLARFLLEQ----------LRVHPQADLRIKFGDEATITEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 N Y + PT+VLSFP + LGDI++A I + G + Sbjct: 51 NERYFDTEGPTDVLSFPGDELLPGRLDEEPEEGDLGDIIIAPTIAAKQGEAAGHGTVAEI 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 L HG LHLLGYDHVD + M GL+ +L+ G Sbjct: 111 ELLTTHGILHLLGYDHVDPDEHAEMFGLQAKLLKAWG 147 >gi|15674590|ref|NP_268764.1| putative metalloprotease [Streptococcus pyogenes M1 GAS] gi|19745597|ref|NP_606733.1| metalloprotease [Streptococcus pyogenes MGAS8232] gi|28896434|ref|NP_802784.1| metalloprotease [Streptococcus pyogenes SSI-1] gi|56808802|ref|ZP_00366516.1| COG0319: Predicted metal-dependent hydrolase [Streptococcus pyogenes M49 591] gi|139474289|ref|YP_001129005.1| metalloprotease [Streptococcus pyogenes str. Manfredo] gi|209558957|ref|YP_002285429.1| putative metalloprotease [Streptococcus pyogenes NZ131] gi|306827876|ref|ZP_07461144.1| probable metalloprotease [Streptococcus pyogenes ATCC 10782] gi|54039916|sp|P67141|RRMF_STRP3 RecName: Full=Probable rRNA maturation factor gi|54039950|sp|P67142|RRMF_STRP8 RecName: Full=Probable rRNA maturation factor gi|54042635|sp|P67140|RRMF_STRP1 RecName: Full=Probable rRNA maturation factor gi|73920979|sp|Q5XDG5|RRMF_STRP6 RecName: Full=Probable rRNA maturation factor gi|145558819|sp|Q1J824|RRMF_STRPF RecName: Full=Probable rRNA maturation factor gi|145558820|sp|Q1JN23|RRMF_STRPC RecName: Full=Probable rRNA maturation factor gi|145558822|sp|Q1JI69|RRMF_STRPD RecName: Full=Probable rRNA maturation factor gi|145558825|sp|Q1JD48|RRMF_STRPB RecName: Full=Probable rRNA maturation factor gi|166231383|sp|A2RG22|RRMF_STRPG RecName: Full=Probable rRNA maturation factor gi|226701662|sp|B5XK72|RRMF_STRPZ RecName: Full=Probable rRNA maturation factor gi|13621700|gb|AAK33485.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] gi|19747723|gb|AAL97232.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] gi|28811685|dbj|BAC64617.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] gi|134272536|emb|CAM30801.1| conserved hypothetical protein [Streptococcus pyogenes str. Manfredo] gi|209540158|gb|ACI60734.1| hypothetical protein Spy49_0401 [Streptococcus pyogenes NZ131] gi|304429924|gb|EFM32965.1| probable metalloprotease [Streptococcus pyogenes ATCC 10782] Length = 165 Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E EI + + L + E+S+ F + R L Sbjct: 1 MYIEMIDETGQVSQEI---------MEQTLDLLNFAAQKTGKEEKEMSVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S + S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPETPILFSQEDLAADPSLAEMMAEFDAYIGELFISIDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 112 QSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEILTAYGL 162 >gi|308513315|ref|NP_953333.3| hypothetical protein GSU2284 [Geobacter sulfurreducens PCA] gi|39984273|gb|AAR35660.1| conserved hypothetical protein TIGR00043 [Geobacter sulfurreducens PCA] Length = 114 Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 2/108 (1%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +S+V T I +N +Y G D+PTNV+SF + +LGD++++ + EA Sbjct: 1 MSVVITGDLGIRRVNRDYLGKDRPTNVISFAMGEGDFGDLNPDVLGDVIISADTAAREAE 60 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVD--DKDACVMEGLERSILEDL 162 G F + L L++HG LH+ GYDH + +A ME ER I L Sbjct: 61 EAGIAFWSRLCFLLLHGTLHITGYDHERSGEAEARRMEAKEREIFALL 108 >gi|313888895|ref|ZP_07822555.1| translation metalloprotein YbeY [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845068|gb|EFR32469.1| translation metalloprotein YbeY [Peptoniphilus harei ACS-146-V-Sch2b] Length = 148 Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 78/142 (54%), Gaps = 4/142 (2%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 D+I + + + K++++++ ++ VE+S+ F I+ LN +YRG+D+ T+ Sbjct: 9 QDDIEITDEIKSLVEKSIASVLKVEGL--DDEVEVSVSFVGDEEIKNLNRDYRGVDRSTD 66 Query: 83 VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 VLSFP +LGD+++ + +A LG E L +L +H LHLLGYDH Sbjct: 67 VLSFPMDDEF--IIDKRILGDVIINTRRVMEQAEELGHSHERELSYLTVHSILHLLGYDH 124 Query: 143 VDDKDACVMEGLERSILEDLGI 164 ++D+D M E+ +++L I Sbjct: 125 MEDEDKREMREREKLSMKELEI 146 >gi|309806598|ref|ZP_07700595.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 03V1-b] gi|312872992|ref|ZP_07733052.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 2062A-h1] gi|312874169|ref|ZP_07734203.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 2052A-d] gi|315653579|ref|ZP_07906499.1| metal-dependent hydrolase [Lactobacillus iners ATCC 55195] gi|308167018|gb|EFO69200.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 03V1-b] gi|311090239|gb|EFQ48649.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 2052A-d] gi|311091514|gb|EFQ49898.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 2062A-h1] gi|315488941|gb|EFU78583.1| metal-dependent hydrolase [Lactobacillus iners ATCC 55195] Length = 175 Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 16/167 (9%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRI 67 ++ I+ DE+ + + + LI +K K N E+S+ F D ++I Sbjct: 1 MTEIDISFN-----DEVDFFSDTRKNWKTWIEELILSAKKNIKKTNRQEMSINFVDINKI 55 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGDIVLAYEIIEIEANVL 118 +N YRG D+PT+V+SF + + +GD+ + E++E A Sbjct: 56 HEINKNYRGKDRPTDVISFAIEDGTDNDLFAQFIETPDFVEDIGDLFICPEVVEKHATEY 115 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 F + ++HG+LHL GYDH+ D +A VM G++ +LE+ G+ Sbjct: 116 ETGFYREFGYTLVHGYLHLNGYDHIKDDEAEVMFGIQSKVLEEYGLP 162 >gi|297243341|ref|ZP_06927274.1| metal-dependent hydrolase [Gardnerella vaginalis AMD] gi|296888588|gb|EFH27327.1| metal-dependent hydrolase [Gardnerella vaginalis AMD] Length = 186 Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 13/152 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E +W + + + + + + +LS+ F D I L Sbjct: 1 MSIEVMNET-VWNIDAKIFSDLGMWVLQQMKVSTHS---------DLSITFVDPEPIACL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 + + ++ PT+V+SFP + + S MLGD+V+ + + +A G ++ Sbjct: 51 HERWMNLEGPTDVMSFPMDELTPGSDEKVSEGMLGDLVICPWVAQQQALAAGHSTMEEML 110 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L IHG LHLLGYDH ++ M GL+R ++ Sbjct: 111 LLTIHGILHLLGYDHTTPEEEKQMFGLQRQLM 142 >gi|309803146|ref|ZP_07697243.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 11V1-d] gi|325912150|ref|ZP_08174548.1| translation metalloprotein YbeY [Lactobacillus iners UPII 143-D] gi|308164654|gb|EFO66904.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 11V1-d] gi|325476100|gb|EGC79268.1| translation metalloprotein YbeY [Lactobacillus iners UPII 143-D] Length = 175 Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 16/167 (9%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRI 67 ++ I+ DE+ + + LI +K K N E+S+ F D ++I Sbjct: 1 MTEIDISFN-----DEVDFLNDTRKNWKTWIEELILSAKKNIKKTNRQEMSINFVDINKI 55 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGDIVLAYEIIEIEANVL 118 +N YRG D+PT+V+SF + + +GD+ + E++E A Sbjct: 56 HEINKNYRGKDRPTDVISFAIEDGTDNDLFAQFIETPDFVEDIGDLFICPEVVEKHATEY 115 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 F + ++HG+LHL GYDH+ D +A VM G++ +LE+ G+ Sbjct: 116 ETGFYREFGYTLVHGYLHLNGYDHIKDDEAEVMFGIQSKVLEEYGLP 162 >gi|268319371|ref|YP_003293027.1| hypothetical protein FI9785_888 [Lactobacillus johnsonii FI9785] gi|262397746|emb|CAX66760.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785] Length = 175 Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 81/158 (51%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + +SNL+ +K KEN E+S+ F S +I +N +YRG Sbjct: 5 DISFNDEVTFLKDSDKDWISWISNLLLSAKKEIHKENAQEMSINFVSSEKIHEINKKYRG 64 Query: 77 IDKPTNVLSFPTAFA---------SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF S D +GD+ L E+I+ + F Sbjct: 65 KDRPTDVISFAIEDGLDEDFMSAFSDDPDFVEDIGDLFLCPEVIKRHSVEYETGFNREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HG+LHL GYDH++D +A +M G++ +L + G+ Sbjct: 125 YTLVHGYLHLNGYDHIEDDEAKIMFGIQGKVLREYGLP 162 >gi|291536163|emb|CBL09275.1| conserved hypothetical protein TIGR00043 [Roseburia intestinalis M50/1] Length = 165 Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 17/151 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + E AK V++ + E++L TD+ I +N EYR ID PT+VLSFP Sbjct: 14 SFDEEALAKEVTDYAIEHEGFPF-EAEINLTLTDNDGIHAINKEYRDIDAPTDVLSFPML 72 Query: 89 ---------------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 + +MLGDI+++ + ++ +A G + LI+H Sbjct: 73 SYESAGDFSKLEDDYDDNFNPDTGEIMLGDIIISVDKVKEQAKSYGHSEKREYAFLILHS 132 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LHL GYDH+ ++A +MEG + IL ++ I Sbjct: 133 MLHLFGYDHMTPEEAAIMEGKQTEILNEMNI 163 >gi|261337356|ref|ZP_05965240.1| putative metalloprotease [Bifidobacterium gallicum DSM 20093] gi|270277734|gb|EFA23588.1| putative metalloprotease [Bifidobacterium gallicum DSM 20093] Length = 181 Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 13/152 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E W + + + + +L+++F D I L Sbjct: 1 MSVDVTNET-QWQIDGKVFSDLALWV---------MEQMQVSTQSDLAILFVDPDPIAQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS---SLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 + + G+ PT+V+SFP + +LGDIV+ + +A G ++ Sbjct: 51 HERWMGLLGPTDVMSFPMDELRPGSTNALSEGILGDIVICPWVAAQQAAAAGHSAMEEML 110 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L IHG LHLLGYDH M GL+R +L Sbjct: 111 LLTIHGVLHLLGYDHRTKDQERQMFGLQRQLL 142 >gi|227890110|ref|ZP_04007915.1| metal-dependent hydrolase [Lactobacillus johnsonii ATCC 33200] gi|227849554|gb|EEJ59640.1| metal-dependent hydrolase [Lactobacillus johnsonii ATCC 33200] Length = 175 Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 81/158 (51%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + +SNL+ +K KEN E+S+ F S +I +N +YRG Sbjct: 5 DISFNDEVTFLKDSDKDWISWISNLLLSAKKEIHKENSQEMSINFVSSKKIHEINKKYRG 64 Query: 77 IDKPTNVLSFPTAFA---------SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF S D +GD+ L E+I+ + F Sbjct: 65 KDRPTDVISFAIEDGLDEDFMSAFSDDPDFVEDIGDLFLCPEVIKRHSVEYETGFNREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HG+LHL GYDH++D +A +M G++ +L + G+ Sbjct: 125 YTLVHGYLHLNGYDHIEDDEAKIMFGIQGKVLREYGLP 162 >gi|291287436|ref|YP_003504252.1| hypothetical protein Dacet_1527 [Denitrovibrio acetiphilus DSM 12809] gi|290884596|gb|ADD68296.1| protein of unknown function UPF0054 [Denitrovibrio acetiphilus DSM 12809] Length = 151 Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 10/153 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ I + + + + V + E+SL+ T RI+ L Sbjct: 1 MEISILITD-------DTEAYGNSQLFSDCAEAVFSMLKVDFDDCEISLLLTTDDRIKEL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N EYR D+ T+VLSFP + MLGDIV++ E + +A+ + + L Sbjct: 54 NGEYRQKDRSTDVLSFPMSEDPL--SEGGMLGDIVISLETAKEQADEAAIMPDREIAFLF 111 Query: 131 IHGFLHLLGYDHVDD-KDACVMEGLERSILEDL 162 IHG LHL+GY+H +D + M L+ IL +L Sbjct: 112 IHGLLHLMGYEHENDPDEEEEMFDLQEEILRNL 144 >gi|256847124|ref|ZP_05552570.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] gi|256715788|gb|EEU30763.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] Length = 157 Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 8/131 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS----- 97 + + E+SL F + I+ LN +YRG+D+ T+V+SF + Sbjct: 26 AFAAHQLGLKENDEMSLTFVRNPEIKALNAKYRGVDRATDVISFAMGDGDEEIVMDDAMA 85 Query: 98 ---SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 LGD+ ++ + ++ +A LG + L L++HGFLHL GYDH D M L Sbjct: 86 AELPHDLGDLFISVDKVKEQALFLGHSADRELGFLVVHGFLHLNGYDHEQPDDEKKMFSL 145 Query: 155 ERSILEDLGIN 165 + IL+D G+ Sbjct: 146 QEKILDDYGLA 156 >gi|253681848|ref|ZP_04862645.1| conserved hypothetical protein YbeY [Clostridium botulinum D str. 1873] gi|253561560|gb|EES91012.1| conserved hypothetical protein YbeY [Clostridium botulinum D str. 1873] Length = 166 Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 21/167 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N D+I++ + ++ + + E+S++F D++ I+ +N E Sbjct: 2 IYIDNR--QDKINIDEKILETVKEIINYTLKEEEVKVN--TEVSVIFIDNNTIKEINKET 57 Query: 75 RGIDKPTNVLSFPTAFASSDG-----------------CSSLMLGDIVLAYEIIEIEANV 117 R IDK T+VLSFP L+LGDIVL+ E E ++ Sbjct: 58 RDIDKVTDVLSFPMLDYPQGKVYKDTYKDYEFDASYLDEGELVLGDIVLSLEKAEEQSTE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 F + +L +H LHLLGYDH++D D M E ILE I Sbjct: 118 FRHSFLREVCYLTVHSVLHLLGYDHMEDDDKVRMRKREEEILERFSI 164 >gi|182418401|ref|ZP_02949695.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237666831|ref|ZP_04526816.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377783|gb|EDT75327.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237658030|gb|EEP55585.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 168 Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 19/159 (11%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 +I + E K + + + E E+SL+F D+ I +N E R ID+ T+ Sbjct: 8 QKKIEVDNRLEEELKKVIEFALKEEEV--EIPCEVSLLFVDNEEIREINNETRNIDRETD 65 Query: 83 VLSFPTAFASSDGCSSLML-----------------GDIVLAYEIIEIEANVLGKEFENH 125 VLSFP + M GDIVL+ E ++ FE Sbjct: 66 VLSFPMLDYDNKKIFKEMYKGYEFSQSDFDGEELVLGDIVLSLEKALEQSLEFNHSFERE 125 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +L++H LHLLGYDH++++D +M E IL +L I Sbjct: 126 ASYLVVHSVLHLLGYDHMEEEDKVIMRKREEEILNELNI 164 >gi|332522950|ref|ZP_08399202.1| translation metalloprotein YbeY [Streptococcus porcinus str. Jelinkova 176] gi|332314214|gb|EGJ27199.1| translation metalloprotein YbeY [Streptococcus porcinus str. Jelinkova 176] Length = 165 Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 68/171 (39%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E L EI +T + FA + E+S+ F + R L Sbjct: 1 MYIEMIDETGLVSQEIMEQTKDLLNFAAK---------KTGKAEKEMSVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSS-----------------LMLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPERPILFDESDLEDNPDLAEMLAEFDAYIGELFISIDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 112 QAQEYGHSFEREMGFLAVHGFLHITGYDHYTPEEEKEMFTLQEEILTAYGL 162 >gi|255521280|ref|ZP_05388517.1| putative metalloprotease [Listeria monocytogenes FSL J1-175] Length = 130 Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 10/129 (7%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS--------- 97 Y E ELSL FT + I +N EYR D+ T+V+SF Sbjct: 1 EYLKIEQGTELSLTFTTNEGIREINREYRDKDQATDVISFALEEMGDGETEIDWGEFDLE 60 Query: 98 -SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 MLGDI+++ E E +A G L L +HG LHLLGYDH++ + +M GL++ Sbjct: 61 TPRMLGDIIISTEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDHMEPDEEKIMFGLQK 120 Query: 157 SILEDLGIN 165 +L+ G+ Sbjct: 121 EVLDAYGLE 129 >gi|300853994|ref|YP_003778978.1| hypothetical protein CLJU_c08080 [Clostridium ljungdahlii DSM 13528] gi|300434109|gb|ADK13876.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528] Length = 164 Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 21/167 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N +++ + E + + + E+S++F D+ I+ +N E Sbjct: 2 IFIDNR--QNKLEVTQELEENIKGVIQCALKEENV--NIPCEISVIFIDNEEIKNINREN 57 Query: 75 RGIDKPTNVLSFPTAFASSD-----------------GCSSLMLGDIVLAYEIIEIEANV 117 R IDK T+VLSFP +L+LGDI L+ E E +A Sbjct: 58 RNIDKVTDVLSFPMLEYPEGSVFKQVYVNHEFEESDMDDGNLVLGDIALSLERAEEQAQE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G F +L +H LHLLGYDH+++ D +M E IL + Sbjct: 118 FGHSFLREACYLTVHSVLHLLGYDHMEESDKKIMRQREEEILSGFKL 164 >gi|189425788|ref|YP_001952965.1| hypothetical protein Glov_2732 [Geobacter lovleyi SZ] gi|189422047|gb|ACD96445.1| protein of unknown function UPF0054 [Geobacter lovleyi SZ] Length = 128 Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 2/113 (1%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + ELS+ I LN EY G D+PTNV+SF + LGD+V++ + Sbjct: 4 PDETELSVTVVGDRAIHRLNREYLGKDRPTNVISFSLQEGEFGDLTPHALGDVVISADTA 63 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD--DKDACVMEGLERSILEDL 162 EA G L+ L++HG LHL GYDH + +A ME ER I + L Sbjct: 64 ADEAQSCGWGGYERLIFLLLHGILHLTGYDHERSGEAEARRMERKEREIWKLL 116 >gi|283783326|ref|YP_003374080.1| metalloprotein, YbeY family [Gardnerella vaginalis 409-05] gi|283441013|gb|ADB13479.1| metalloprotein, YbeY family [Gardnerella vaginalis 409-05] Length = 186 Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 13/152 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E +W + + + + + + +LS+ F D I L Sbjct: 1 MSIEVMNET-VWNIDAKIFSDLGMWVLQQMKVSTHS---------DLSITFVDPEPIACL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 + + ++ PT+V+SFP + + S MLGD+V+ + + +A G ++ Sbjct: 51 HERWMNLEGPTDVMSFPMDELTPGSDEKVSEGMLGDLVICPWVAQQQALAAGHSTMEEML 110 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L IHG LHLLGYDH ++ M GL+R ++ Sbjct: 111 LLTIHGILHLLGYDHTTPEEEKQMFGLQRQLM 142 >gi|302874331|ref|YP_003842964.1| hypothetical protein Clocel_1447 [Clostridium cellulovorans 743B] gi|307689402|ref|ZP_07631848.1| putative metalloprotease [Clostridium cellulovorans 743B] gi|302577188|gb|ADL51200.1| protein of unknown function UPF0054 [Clostridium cellulovorans 743B] Length = 166 Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 19/159 (11%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 E+ + K + + + E+S+++ D+ I +N + R IDK T+ Sbjct: 8 QSEVEVDDDFNGTIRKVIDYALKEEGV--NIPYEISIIYVDNETIRNINSDTRKIDKVTD 65 Query: 83 VLSFPTAFASSD-----------------GCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 VLSFP L+LGDIVL+ E + ++ G + Sbjct: 66 VLSFPMLDYPKGQVYKNTYEDQSFHVVDLDDGYLVLGDIVLSLEKAKEQSEEYGHSYLRE 125 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +L+IH LHLLGYDH+++++ +M E +IL + I Sbjct: 126 TCYLVIHSVLHLLGYDHMEEEEKGIMRKREETILSEFSI 164 >gi|168187766|ref|ZP_02622401.1| conserved hypothetical protein [Clostridium botulinum C str. Eklund] gi|169294380|gb|EDS76513.1| conserved hypothetical protein [Clostridium botulinum C str. Eklund] Length = 166 Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 21/168 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N D+I + + + + + E+S+V D++ I+ +N + Sbjct: 2 IYIDNR--QDKIEIDEKILHTLEEIIKYALKEEEVYVN--TEVSVVLIDNNTIKEINKQT 57 Query: 75 RGIDKPTNVLSFPTAFASSDG-----------------CSSLMLGDIVLAYEIIEIEANV 117 R IDK T+VLSFP L+LGDIVL+ E E + Sbjct: 58 RDIDKVTDVLSFPMLDYPKGETYKEVYKDYEFDASYLDEGELVLGDIVLSLERAEEQRKE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G F + +L IH LHLLGYDH++D + +M E IL I Sbjct: 118 FGHSFLREVCYLTIHSVLHLLGYDHMEDDEKIIMRKREEEILNKFSIK 165 >gi|289450697|ref|YP_003475263.1| GTP-binding protein Era [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185244|gb|ADC91669.1| GTP-binding protein Era [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 563 Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 79/170 (46%), Gaps = 16/170 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKEN-IVELSLVFTDSHRIET 69 + +Q E W LR + S L Y +E E ++ F + + + Sbjct: 1 MLIQFQKEKCKWST-AELRQIIRYTLQAGFSYLPFSDYLSEEGLQPEFAVTFIGADAMRS 59 Query: 70 LNFEYRGIDKPTNVLSFPTAFAS-------------SDGCSSLMLGDIVLAYEIIEIEAN 116 LN E RGIDK T+VLSFP + +S+ LGDIV+ + E +A Sbjct: 60 LNKEQRGIDKVTDVLSFPMLAMKKGALEEHLTAADINPENNSVFLGDIVICLDRAEEQAL 119 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGIN 165 + + L +H LHL+GYDHVD++ D ME ++R +L++LGI Sbjct: 120 EFNHTMQREVAFLTLHSMLHLVGYDHVDNETDRLEMEEIQRELLDNLGIK 169 >gi|317471788|ref|ZP_07931126.1| hypothetical protein HMPREF1011_01475 [Anaerostipes sp. 3_2_56FAA] gi|316900714|gb|EFV22690.1| hypothetical protein HMPREF1011_01475 [Anaerostipes sp. 3_2_56FAA] Length = 165 Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 63/122 (51%), Gaps = 15/122 (12%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC---------------SS 98 E++L+ + I +N E RGID+PT+VLSFP + GC Sbjct: 37 ECEVNLMLVGNEEIHRINLEQRGIDRPTDVLSFPMIEYENPGCFDGLEEDPAAFHPDTGE 96 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LMLGDIV++ + + +A G E LI H LHL GYDH++D++ VME + I Sbjct: 97 LMLGDIVISLDKAKEQAKAYGHSLEREYAFLIAHSMLHLFGYDHMEDEERAVMEEKQEEI 156 Query: 159 LE 160 L+ Sbjct: 157 LQ 158 >gi|2749950|gb|AAC38046.1| unknown [Streptococcus mutans] Length = 164 Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E + I +TL + FA + E+++ F + R L Sbjct: 1 MYIEMIDETNQVSEGIKNQTLDILEFAA---------QKTGKEDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N +YR ++PT+V+S SS +G++ ++ + Sbjct: 52 NLKYRDTNRPTDVISLEYKPESSLSFDEEDLADDPDLAEVLTEFDAYIGELFISVDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE + L +HGFLH+ GYDH ++ M L+ IL+ G+ Sbjct: 112 QAQEYGHSFEREMGFLAVHGFLHINGYDHYTPQEEKEMFSLQEEILDAYGLK 163 >gi|83944997|ref|ZP_00957363.1| hypothetical protein OA2633_10219 [Oceanicaulis alexandrii HTCC2633] gi|83851779|gb|EAP89634.1| hypothetical protein OA2633_10219 [Oceanicaulis alexandrii HTCC2633] Length = 158 Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 71/158 (44%), Gaps = 12/158 (7%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++ VE W L C ++ + ++F+D + LN Sbjct: 11 VEFVVEADAWSGHDGLMRACLQAIEAGLNAIEDPRAGAAV------ILFSDDATVHELNR 64 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +R DK TNVLSFP GD++LAYE EA +H HL +H Sbjct: 65 RFRDKDKSTNVLSFPAPE------REGYPGDVILAYETCAKEAQAAAISLIDHAAHLALH 118 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 G LHL G+DH ++ +A ME LE ++L LGI DPY V Sbjct: 119 GVLHLNGFDHQEEDEAAAMEALETAVLTGLGIQDPYLV 156 >gi|257413987|ref|ZP_04744887.2| putative metalloprotease [Roseburia intestinalis L1-82] gi|257201590|gb|EEU99874.1| putative metalloprotease [Roseburia intestinalis L1-82] Length = 169 Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 17/151 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + E AK V++ + E++L TD+ I +N EYR ID PT+VLSFP Sbjct: 18 SFDEEALAKEVTDYAIEHEGFPF-EAEINLTLTDNDGIHAINKEYRDIDAPTDVLSFPML 76 Query: 89 ---------------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 + +MLGDI+++ + ++ +A G + LI+H Sbjct: 77 SYESAGDFSKLEDDYDDNFNPDTGEIMLGDIIISVDKVKEQAKSYGHSEKREYAFLILHS 136 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LHL GYDH+ ++A +MEG + IL ++ I Sbjct: 137 MLHLFGYDHMTPEEAAIMEGKQTEILNEMNI 167 >gi|308235188|ref|ZP_07665925.1| putative metalloprotease [Gardnerella vaginalis ATCC 14018] gi|311114843|ref|YP_003986064.1| putative metalloprotease [Gardnerella vaginalis ATCC 14019] gi|310946337|gb|ADP39041.1| probable metalloprotease [Gardnerella vaginalis ATCC 14019] Length = 175 Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYEIIE 112 +LS+ F D I +L+ ++ ++ PT+V+SFP + D S MLGD+V+ + Sbjct: 36 DLSITFVDPEPIASLHEKWMDLEGPTDVMSFPMDELTPGSDDKVSEGMLGDLVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH ++ M GL+R +L Sbjct: 96 QQAAAAGHSTMEEMLLLTIHGMLHLLGYDHTTPQEEKQMFGLQRQLL 142 >gi|312875653|ref|ZP_07735654.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 2053A-b] gi|311088907|gb|EFQ47350.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 2053A-b] Length = 175 Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 16/167 (9%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRI 67 ++ I+ DE+ + + + LI +K K N E+S+ F + ++I Sbjct: 1 MTEIDISFN-----DEVDFFSDTRKNWKTWIEELILSAKKNIKKTNRQEMSINFVNINKI 55 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGDIVLAYEIIEIEANVL 118 +N YRG D+PT+V+SF + + +GD+ + E++E A Sbjct: 56 HEINKNYRGKDRPTDVISFAIEDGTDNDLFAQFIETPDFVEDIGDLFICPEVVEKHATEY 115 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 F + ++HG+LHL GYDH+ D +A VM G++ +LE+ G+ Sbjct: 116 ETGFYREFGYTLVHGYLHLNGYDHIKDDEAEVMFGIQSKVLEEYGLP 162 >gi|320160837|ref|YP_004174061.1| hypothetical protein ANT_14330 [Anaerolinea thermophila UNI-1] gi|319994690|dbj|BAJ63461.1| hypothetical protein ANT_14330 [Anaerolinea thermophila UNI-1] Length = 150 Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 1/124 (0%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + + ++++ + +++LN ++ G + PT+VLSF F + Sbjct: 20 IRAAEETLRVENHSDSDVTISIQNDEALKSLNAQFMGTEAPTDVLSFTMDFFDPE-TERQ 78 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 LGDI+++YE E +A G EN L+ LI+HG LHL+GYDH +++ M + IL Sbjct: 79 YLGDILISYERAEEQAQTAGHSTENELILLIVHGILHLVGYDHGTEEEKSKMWKTQSEIL 138 Query: 160 EDLG 163 + LG Sbjct: 139 KQLG 142 >gi|291538974|emb|CBL12085.1| conserved hypothetical protein TIGR00043 [Roseburia intestinalis XB6B4] Length = 169 Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 17/151 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + E AK V++ + E++L TD+ I +N EYR ID PT+VLSFP Sbjct: 18 SFDEEALAKEVTDYAIEHEGFPF-EAEINLTLTDNDGIHAINKEYRDIDAPTDVLSFPML 76 Query: 89 ---------------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 + +MLGDI+++ + ++ +A G + LI+H Sbjct: 77 SYESAGDFSKLEDNYDDNFNPDTGEIMLGDIIISVDKVKEQAKSYGHSEKREYAFLILHS 136 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LHL GYDH+ ++A +MEG + IL ++ I Sbjct: 137 MLHLFGYDHMTPEEAAIMEGKQTEILNEMNI 167 >gi|225027038|ref|ZP_03716230.1| hypothetical protein EUBHAL_01294 [Eubacterium hallii DSM 3353] gi|224955502|gb|EEG36711.1| hypothetical protein EUBHAL_01294 [Eubacterium hallii DSM 3353] Length = 169 Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 18/149 (12%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E V + + Y ++ ++ TD+ I +N E+R ID+PT+VLSFP A Sbjct: 17 YETVIKNVIEAALD--YEKCPYEAQVYVLLTDNEEIHEINKEHRQIDRPTDVLSFPMADY 74 Query: 92 S----------------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 L+LGDI+++ + ++ +A G L L+ H L Sbjct: 75 PVPGDFSDIEERDPDAFHPETGELILGDIIISMDKVKEQAKAYGHSNTRELAFLVAHSML 134 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGI 164 HL+GYDH+ D++ VME + IL++ G Sbjct: 135 HLMGYDHMVDEERKVMEAKQEEILKNCGY 163 >gi|296393920|ref|YP_003658804.1| hypothetical protein Srot_1510 [Segniliparus rotundus DSM 44985] gi|296181067|gb|ADG97973.1| protein of unknown function UPF0054 [Segniliparus rotundus DSM 44985] Length = 180 Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 16/154 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ L E L + + + ELS++ D+ + L Sbjct: 1 MSVELSNESGLSAPEGMLIHVAQFALDQM----------RVNPAAELSMLLVDTTTMAHL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSS------LMLGDIVLAYEIIEIEANVLGKEFEN 124 + ++ + PT+VLSFP A DG +LGDIVL E+ +A G E+ Sbjct: 51 HQQWMNLPGPTDVLSFPMDDAEPDGRPDAVEAAQTLLGDIVLCPEVAAEQAEAAGHSAEH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 ++ L +HG LH+LGYDH + ++ M L+ + Sbjct: 111 EMIVLTVHGVLHILGYDHAEPEEEAEMFALQGKL 144 >gi|313892397|ref|ZP_07825989.1| translation metalloprotein YbeY [Dialister microaerophilus UPII 345-E] gi|329121359|ref|ZP_08249985.1| putative metalloprotease [Dialister micraerophilus DSM 19965] gi|313119256|gb|EFR42456.1| translation metalloprotein YbeY [Dialister microaerophilus UPII 345-E] gi|327469768|gb|EGF15234.1| putative metalloprotease [Dialister micraerophilus DSM 19965] Length = 169 Score = 94.3 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 3/139 (2%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKE--NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 + C + + ++ KG +++ EL ++ + RI LN +YRGID PT+VLSF Sbjct: 10 QKYCNEETEQLILKVLKKGAELQKLPEDAELGVLICGAERIHELNRDYRGIDAPTDVLSF 69 Query: 87 PTAFASS-DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 LGDI+L + + +A++ G E + +L +HGFLH+LGYDH + Sbjct: 70 ALNEGEDYIPEEEKALGDIILNIDRAKEQAHMYGHSEEREMAYLSVHGFLHILGYDHYEA 129 Query: 146 KDACVMEGLERSILEDLGI 164 ++ M E IL G+ Sbjct: 130 EEKKEMRKAEEDILGACGL 148 >gi|291279469|ref|YP_003496304.1| hypothetical protein DEFDS_1079 [Deferribacter desulfuricans SSM1] gi|290754171|dbj|BAI80548.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 154 Score = 94.3 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 11/154 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 ++ L I + F VS L+ + + E+SL+ T+S I+ Sbjct: 3 NKIKLNILIN-------KKNPVQVSDDFFYKVSELVFEQINYPLSEAEISLLLTNSEEIK 55 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN +R D PT+VLSFP +LGDIV+ + +E + +E L Sbjct: 56 ILNKNFRDKDYPTDVLSFPMNDE---CLEDSILGDIVINLDKVEEYSKENDIPYERELAF 112 Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILED 161 L IHG LHLLGYDH ++++ +M L+ IL+ Sbjct: 113 LYIHGLLHLLGYDHEINEEEEKIMFDLQEDILKK 146 >gi|331091150|ref|ZP_08339992.1| hypothetical protein HMPREF9477_00635 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405372|gb|EGG84908.1| hypothetical protein HMPREF9477_00635 [Lachnospiraceae bacterium 2_1_46FAA] Length = 164 Score = 94.3 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 51/155 (32%), Positives = 76/155 (49%), Gaps = 17/155 (10%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E+ L CE + V ++ Y E++L+ T + I+ +N E+R ID+ T+VL Sbjct: 10 ELKLDLECETLAETVVEGVLD--YEKCPYEAEVNLLLTMNKEIQEMNAEFRHIDRATDVL 67 Query: 85 SFPTAFASSDGC---------------SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 SFP G LMLGDIV++ E + +A G + L Sbjct: 68 SFPMIDYEKAGEFAFLEEDDSYFNCDTGELMLGDIVISKEKVIAQAEEYGHTIKREYAFL 127 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 I H LHLLGYDH+++++ ME ++ ILE LGI Sbjct: 128 IAHSMLHLLGYDHMEEQERLEMERKQKEILEQLGI 162 >gi|28378612|ref|NP_785504.1| hypothetical protein lp_1969 [Lactobacillus plantarum WCFS1] gi|254556827|ref|YP_003063244.1| hypothetical protein JDM1_1660 [Lactobacillus plantarum JDM1] gi|300768140|ref|ZP_07078045.1| metal-dependent hydrolase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180768|ref|YP_003924896.1| hypothetical protein LPST_C1586 [Lactobacillus plantarum subsp. plantarum ST-III] gi|38258751|sp|Q88VR8|RRMF_LACPL RecName: Full=Probable rRNA maturation factor gi|28271448|emb|CAD64353.1| unknown [Lactobacillus plantarum WCFS1] gi|254045754|gb|ACT62547.1| conserved hypothetical protein [Lactobacillus plantarum JDM1] gi|300494204|gb|EFK29367.1| metal-dependent hydrolase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046259|gb|ADN98802.1| hypothetical protein LPST_C1586 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 159 Score = 94.3 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 10/127 (7%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG----------CSS 98 + E+S+ ++ I+ +N +YRG+D+PT+V+SF D Sbjct: 32 LKLRDDTEVSVTLMNNDAIQKINEQYRGVDRPTDVISFAMHDDDEDDLIVMDPEMAAEMP 91 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L LGDI+++ + + +A L L +L++HGFLHL GYDH+ D M L+R I Sbjct: 92 LNLGDIMISVDKVSEQAAFLNHSEARELGYLVVHGFLHLNGYDHLQPADETEMFTLQRQI 151 Query: 159 LEDLGIN 165 L+ G+ Sbjct: 152 LDAYGLE 158 >gi|309810260|ref|ZP_07704105.1| translation metalloprotein YbeY [Lactobacillus iners SPIN 2503V10-D] gi|312871748|ref|ZP_07731836.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 3008A-a] gi|325912641|ref|ZP_08175024.1| translation metalloprotein YbeY [Lactobacillus iners UPII 60-B] gi|308169532|gb|EFO71580.1| translation metalloprotein YbeY [Lactobacillus iners SPIN 2503V10-D] gi|311092690|gb|EFQ51046.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 3008A-a] gi|325478062|gb|EGC81191.1| translation metalloprotein YbeY [Lactobacillus iners UPII 60-B] Length = 175 Score = 94.3 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 16/167 (9%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRI 67 ++ I+ DE+ + + + LI +K K N E+S+ F D +++ Sbjct: 1 MTEIDISFN-----DEVDFFSDTRKNWKTWIEELILSAKKNIKKTNRQEMSINFVDINKM 55 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGDIVLAYEIIEIEANVL 118 +N YRG D+PT+V+SF + +GD+ + E++E A Sbjct: 56 HEINKNYRGKDRPTDVISFAIEDGIDNDLFAQFIETPDFVEDIGDLFICPEVVEKHATEY 115 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 F + ++HG+LHL GYDH+ D +A VM G++ +LE+ G+ Sbjct: 116 ETGFYREFGYTLVHGYLHLNGYDHIKDDEAEVMFGIQSKVLEEYGLP 162 >gi|47086839|ref|NP_997759.1| rRNA maturation factor homolog [Danio rerio] gi|326681334|ref|XP_003201790.1| PREDICTED: rRNA maturation factor homolog [Danio rerio] gi|45709063|gb|AAH67584.1| Zgc:85702 [Danio rerio] Length = 163 Score = 94.3 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 7/118 (5%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC-------SSLMLGDIV 105 ++ ++ D+ +I+ +N YR ++PT+VLSFP G LGDI Sbjct: 33 QKFDMGIICVDNRKIQRINHTYRRRNQPTDVLSFPFYEDLRPGKVPCALQRDEYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 L E + + ++ L + HG HLLGY H +++ M+ E IL + Sbjct: 93 LGVEYVMQQCKETKQDLHQTLTVVTAHGICHLLGYRHETEEEWNEMQQKESYILSEFN 150 >gi|308535206|ref|YP_002137815.2| hypothetical protein Gbem_0998 [Geobacter bemidjiensis Bem] gi|308052551|gb|ACH38019.2| protein of unknown function UPF0054 [Geobacter bemidjiensis Bem] Length = 155 Score = 94.3 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 2/112 (1%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 ELS+ I +N +Y G DK TNV+SF + +LGD+V++ + Sbjct: 38 PEAELSISIVGDRAIRVINRDYLGRDKATNVISFAMQEGEFGAVNPELLGDVVISVDTAA 97 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVD--DKDACVMEGLERSILEDL 162 EA G+ F + L L++HG LH+ GYDH + +A ME ER I L Sbjct: 98 REAEEAGETFLSRLYFLLMHGILHITGYDHERSGEAEAARMEAKEREIFALL 149 >gi|315640635|ref|ZP_07895741.1| metalloprotease [Enterococcus italicus DSM 15952] gi|315483663|gb|EFU74153.1| metalloprotease [Enterococcus italicus DSM 15952] Length = 160 Score = 94.3 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 17/158 (10%) Query: 25 EIHLRTLCEVVFAKAVSNLIS-----KGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 EI E V AK + + + E+S+ F D++ I+ +N YR D Sbjct: 2 EIAFIDENERVTAKKMQEIDDLLQYAASHLDLPEDTEMSITFMDNNEIQEINRVYRNKDM 61 Query: 80 PTNVLSFPTAFASSDGCS------------SLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 PT+V+SF D LGD++++ E +A G + L Sbjct: 62 PTDVISFALEEEGEDELPIIFDEEFDDSQFPRNLGDLMISVERANEQAEEYGHSVDRELG 121 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L +HGFLHL GYDH+ +D VM GL++ IL+ G+ Sbjct: 122 FLALHGFLHLNGYDHMTPEDEKVMFGLQKEILDAYGLK 159 >gi|168335125|ref|ZP_02693233.1| hypothetical protein Epulo_08803 [Epulopiscium sp. 'N.t. morphotype B'] Length = 153 Score = 94.3 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 9/157 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I + L+ E L V + + N +E+SL D I T+ Sbjct: 1 MHIDIDDQEGLFVLEPKLEQKIIEVIEECLK------LENISNDIEISLSIVDKETIRTI 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSS---LMLGDIVLAYEIIEIEANVLGKEFENHLV 127 N ++R ID+ T+VLSFP A S+ S ++LGDI++ +I + +A + Sbjct: 55 NRDFREIDRDTDVLSFPQFEAQSEFVDSADVVILGDIIICLDIAKEQAVAYNHSLAREIC 114 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LI H HLLGYDH+ + D +M + +LE L I Sbjct: 115 FLIAHSCFHLLGYDHMTEDDEIIMFAKQDCVLETLKI 151 >gi|251772247|gb|EES52817.1| conserved protein of unknown function [Leptospirillum ferrodiazotrophum] Length = 180 Score = 94.3 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 12/149 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I + L+ V + + V ++ +LSLV + R+ L Sbjct: 1 MSIEI----------LSLQRALPVDTERLHRHARLALEAVGQDHCDLSLVLVNDKRMREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG T+VLSF S LG+IV++ +A G E+ L +L+ Sbjct: 51 NRTYRGKPSTTDVLSFEGPPGSPP-RMPRFLGEIVISVPRAHRQAMTAGLSPEDELSNLL 109 Query: 131 IHGFLHLLGYDHVD-DKDACVMEGLERSI 158 IHG HLLG+DH ++D +M+ E I Sbjct: 110 IHGVCHLLGFDHERGEEDQRIMKAEEEKI 138 >gi|282898521|ref|ZP_06306511.1| Protein of unknown function UPF0054 [Raphidiopsis brookii D9] gi|281196687|gb|EFA71593.1| Protein of unknown function UPF0054 [Raphidiopsis brookii D9] Length = 174 Score = 94.3 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 12/160 (7%) Query: 14 QIAVENA---LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++ VEN+ +++ V F++ ++ L K E+ L T+ +I+ L Sbjct: 14 ELFVENSYHLNLTNQVSEERWY-VWFSQWLNLLAVKLPRAL--SYEIGLQLTNDAQIQEL 70 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFEN 124 N +YR D+PT+VL+F + L LGDIV++ + +A Sbjct: 71 NAQYRQKDQPTDVLAFAALENNFPYTEEMLASQPLYLGDIVISIDTAIRQAQEREHNLTT 130 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L HG LHLLG+DH D++ M + +L+ +GI Sbjct: 131 ELAWLSAHGLLHLLGWDHPDEQSLIEMLNKQSMLLKLVGI 170 >gi|42560996|ref|NP_975447.1| hypothetical protein MSC_0461 [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|59799038|sp|Q6MTE7|RRMF_MYCMS RecName: Full=Probable rRNA maturation factor gi|42492493|emb|CAE77089.1| Conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 164 Score = 94.3 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 10/153 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + EN + D + C + A YF +ELS+ F + + + Sbjct: 1 MIRINYFNENDINMDF--WKKFCNKILKTA------YNYFNFNYDIELSITFVNDLKAQQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 +N +YR +V SFP ++ LGD+ + + +A + + + Sbjct: 53 INQQYRNHSYIADVTSFPVEMTENEIKAIGFRELGDMFINLNEAKRKAIKYNHDLNSEMG 112 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 L +HGFLHLLGYDH D D +M L+ IL+ Sbjct: 113 FLFVHGFLHLLGYDHEDSNDEKIMFDLQDQILK 145 >gi|254519867|ref|ZP_05131923.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] gi|226913616|gb|EEH98817.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] Length = 166 Score = 94.3 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 17/138 (12%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-- 101 S E ++SL+F D+ I +N E R ID+ T+VLSFP + M Sbjct: 27 FSLKEEGVECQYQISLLFVDNEEIREINNETRNIDRATDVLSFPMLDFEDKKVFNEMYLN 86 Query: 102 ---------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 GD+VL+ E ++ G +E + +L++H LHLLGYDH+++ Sbjct: 87 YDFDETFKDGDELILGDMVLSLERALEQSEEYGHSYEREVSYLVVHSILHLLGYDHMEED 146 Query: 147 DACVMEGLERSILEDLGI 164 D M E IL L I Sbjct: 147 DKKRMRKREEEILNKLQI 164 >gi|325569846|ref|ZP_08145840.1| metal-dependent hydrolase [Enterococcus casseliflavus ATCC 12755] gi|325156969|gb|EGC69137.1| metal-dependent hydrolase [Enterococcus casseliflavus ATCC 12755] Length = 158 Score = 94.3 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 10/132 (7%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS----------FPTAFASS 93 + G+ E+S+ F D+ I+ +N EYRG D PT+V+S P F + Sbjct: 26 FAAGHLDLPADTEMSVTFMDNAAIQEINREYRGKDMPTDVISFAFEEETAEEMPIIFDEA 85 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 LGDI+++ E + +A G ++ L L +HGFLH+ GYDH+ +D M G Sbjct: 86 LEEMPRDLGDIMISIERAKEQAAEYGHTYDRELGFLALHGFLHINGYDHMTPEDEKEMFG 145 Query: 154 LERSILEDLGIN 165 L++ IL+ G+ Sbjct: 146 LQKEILDAYGLK 157 >gi|313891316|ref|ZP_07824934.1| translation metalloprotein YbeY [Streptococcus pseudoporcinus SPIN 20026] gi|313120383|gb|EFR43504.1| translation metalloprotein YbeY [Streptococcus pseudoporcinus SPIN 20026] Length = 165 Score = 94.3 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E L EI +T + FA ++ E+S+ F + R L Sbjct: 1 MYIEMIDETGLVSQEIMEQTKDLLNFAAK---------KTGKSEKEMSVTFVTTERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSS-----------------LMLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPERPILFEESDLENNPDLAEMLAEFDAYIGELFISVDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 112 QAQEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEILTAYGL 162 >gi|309805177|ref|ZP_07699229.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 09V1-c] gi|329920078|ref|ZP_08276909.1| translation metalloprotein YbeY [Lactobacillus iners SPIN 1401G] gi|308165411|gb|EFO67642.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 09V1-c] gi|328936532|gb|EGG32976.1| translation metalloprotein YbeY [Lactobacillus iners SPIN 1401G] Length = 175 Score = 94.3 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 16/167 (9%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRI 67 ++ I+ DE+ + + + LI +K K N E+S+ F + ++I Sbjct: 1 MTEIDISFN-----DEVDFFSDTRKNWKTWIEELILSAKKNIKKTNRQEMSINFVNINKI 55 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGDIVLAYEIIEIEANVL 118 +N YRG D+PT+V+SF + + +GD+ + E++E A Sbjct: 56 HEINKNYRGKDRPTDVISFAIEDGTDNDLFAQFIETPDFVEDIGDLFICPEVVEKHATEY 115 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 F + ++HG+LHL GYDH+ D +A VM G++ +LE+ G+ Sbjct: 116 ETGFYREFGYTLVHGYLHLNGYDHIQDDEAEVMFGIQSKVLEEYGLP 162 >gi|313897363|ref|ZP_07830906.1| translation metalloprotein YbeY [Clostridium sp. HGF2] gi|312957733|gb|EFR39358.1| translation metalloprotein YbeY [Clostridium sp. HGF2] Length = 155 Score = 94.3 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 14/157 (8%) Query: 11 LDLQIAVENA--LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 +++ + ++ W + + E + S++F I Sbjct: 1 MEISVFNQSGERRWSRYASDFRTISEKTQQVLK---------LEGLRSASVIFVTPQMIH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGC---SSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +N +YRGID+PT+V+SF + LGDI + E I +A G Sbjct: 52 EMNRDYRGIDRPTDVISFAMKDSEDAYEVMEGEEELGDIFINIEAISAQAADYGHSLRRE 111 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L HG LHLLGYDH+ +D VM L+ IL+D+ Sbjct: 112 VCFLFTHGLLHLLGYDHMTPEDEAVMFQLQDVILDDI 148 >gi|329667243|gb|AEB93191.1| putative metal-dependent hydrolase [Lactobacillus johnsonii DPC 6026] Length = 175 Score = 94.3 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE++ + + +S+L+ +K KEN E+S+ F S +I +N +YRG Sbjct: 5 DISFNDEVNFLKDSDKDWIPWISDLLLSAKKEIHKENTQEMSINFVSSKKIHEINKKYRG 64 Query: 77 IDKPTNVLSFPTAFA---------SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF S D +GD+ L E+I+ + F Sbjct: 65 KDRPTDVISFAIEDGLDEDFMSAFSDDPDFVEDIGDLFLCPEVIKRHSVEYETGFNREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HG+LHL GYDH++D +A +M G++ +L + G+ Sbjct: 125 YTLVHGYLHLNGYDHIEDDEAKIMFGIQGKVLREYGLP 162 >gi|15894575|ref|NP_347924.1| putative metalloprotease [Clostridium acetobutylicum ATCC 824] gi|26006917|sp|Q97JI7|RRMF_CLOAB RecName: Full=Probable rRNA maturation factor gi|15024222|gb|AAK79264.1|AE007641_10 Uncharacterized conserved predicted metal-binding protein, YQFG ortholog [Clostridium acetobutylicum ATCC 824] gi|325508707|gb|ADZ20343.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018] Length = 166 Score = 94.3 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 21/168 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N + I + + + + + + E+S++F D+ I +N E Sbjct: 2 IYIDNR--QNSITVDENLQNTIREVIDYALKEEGMKI--SYEVSVIFVDNETIREINREN 57 Query: 75 RGIDKPTNVLSFPTAFASSDG-----------------CSSLMLGDIVLAYEIIEIEANV 117 R +DK T+VLSFP +L+LGDI L+ E E ++ Sbjct: 58 REVDKVTDVLSFPMLEYGEGKVFKDIYEECDFEDEYFDEGNLVLGDIALSLERAEEQSKE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G F +L +H LHL+GYDH+ D+D M E IL IN Sbjct: 118 YGHSFLREAAYLTVHSVLHLMGYDHMVDEDKIKMRKREEEILSHFDIN 165 >gi|325690750|gb|EGD32751.1| metalloprotease [Streptococcus sanguinis SK115] gi|325696182|gb|EGD38073.1| metalloprotease [Streptococcus sanguinis SK160] Length = 165 Score = 93.9 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I E +EI +T + FA + E+++ F + R L Sbjct: 1 MYIEIVDETGQVSEEILKQTQEILEFAA---------QKTGKENKEMAVTFVSNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPELDIAVDEEDLLDHPELAEMLEDFDAYIGELFISVDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|225572106|ref|ZP_03780970.1| hypothetical protein RUMHYD_00400 [Blautia hydrogenotrophica DSM 10507] gi|225040440|gb|EEG50686.1| hypothetical protein RUMHYD_00400 [Blautia hydrogenotrophica DSM 10507] Length = 164 Score = 93.9 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 20/165 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I +EN G+ + A+ V ++ V+++LV TD+ I+ +N ++ Sbjct: 3 IFIENEYEGEIFVDCASYANLVAEKVLDM-----EGCPYEVQINLVLTDNEEIQRVNQQF 57 Query: 75 RGIDKPTNVLSFPT---------------AFASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 R I+ PT+VLSFP L+LGDI+++ +E +A G Sbjct: 58 RDINAPTDVLSFPMIPFPTPGDYKILEEEDSYFDLDTGELILGDIMISIPRMETQAQEFG 117 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L+ H LHLLGYDH+ K+A VME + LE+L I Sbjct: 118 HSQVREFSFLVAHSILHLLGYDHMTPKEAAVMEAKQSQALEELQI 162 >gi|226443168|ref|NP_001140067.1| metalloprotease C21orf57 [Salmo salar] gi|221221630|gb|ACM09476.1| metalloprotease C21orf57 [Salmo salar] Length = 168 Score = 93.9 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 7/118 (5%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA-------SSDGCSSLMLGDIV 105 +L ++ D+ +I+ +N YR + PT+VLSFP L LGDI Sbjct: 33 QKFDLGVICVDNRKIQRINNIYRKKNMPTDVLSFPFYEELRPGKLPCPLYRDELNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 L E + + ++ L + HG HLLGY H +++ M E IL + Sbjct: 93 LGVEYVMKQCQQQSQDLHGILTSVTAHGICHLLGYRHETEEEWKEMLQKESYILNEFN 150 >gi|288905824|ref|YP_003431046.1| hypothetical protein GALLO_1631 [Streptococcus gallolyticus UCN34] gi|306831913|ref|ZP_07465068.1| probable metalloprotease [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|306834027|ref|ZP_07467148.1| probable metalloprotease [Streptococcus bovis ATCC 700338] gi|325978859|ref|YP_004288575.1| putative metalloprotease [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732550|emb|CBI14122.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34] gi|304423815|gb|EFM26960.1| probable metalloprotease [Streptococcus bovis ATCC 700338] gi|304425839|gb|EFM28956.1| probable metalloprotease [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178787|emb|CBZ48831.1| putative metalloprotease [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 165 Score = 93.9 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E + I +TL + FA ++ E+++ F + R L Sbjct: 1 MYVEMIDETGQVSEAIKKQTLDLLQFAA---------EKTGKDNKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S SS S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPESSLSFSEEDLEENPELAEMLDEFDAYIGELFISVDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEILTAYGLK 163 >gi|225868114|ref|YP_002744062.1| hypothetical protein SZO_05050 [Streptococcus equi subsp. zooepidemicus] gi|225701390|emb|CAW98464.1| conserved hypothetical protein [Streptococcus equi subsp. zooepidemicus] Length = 181 Score = 93.9 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 66/173 (38%), Gaps = 26/173 (15%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 + +++ E E+ + + L + + E+++ F + R Sbjct: 15 IMMYIEMIDETKQVSQEM---------MEQTIDLLNFAAKTIGKEDKEMAVTFVTNDRSH 65 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSD-----------------GCSSLMLGDIVLAYEII 111 LN EYR D+PT+V+S +G++ ++ + Sbjct: 66 ALNLEYRDTDRPTDVISLEYKPELPIAFSQEDLELDPDLAGMLQEFDAYIGELFISVDKA 125 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 126 HEQAEAYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEILTAYGL 178 >gi|168307881|ref|ZP_02690556.1| conserved hypothetical protein TIGR00043 [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902725|gb|EDT49014.1| conserved hypothetical protein TIGR00043 [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 155 Score = 93.9 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 5/141 (3%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 +I L F + + +K K+ E F D I+ +N YR D T+V Sbjct: 10 KKIFNHKLYSQRFKQITDLVSTKLNIDKKRFFEC--HFVDEKTIQKINKNYRNKDYITDV 67 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +SF + +LG++ + Y+ + +A+ FE L L HG LHLLGYDH+ Sbjct: 68 ISFAFDDGEII---TPLLGEMYICYQKVVDQASQFAHSFERELCFLFTHGLLHLLGYDHI 124 Query: 144 DDKDACVMEGLERSILEDLGI 164 +D +M L+ IL +L I Sbjct: 125 KIEDEKIMFALQDEILNELKI 145 >gi|329116194|ref|ZP_08244911.1| translation metalloprotein YbeY [Streptococcus parauberis NCFD 2020] gi|326906599|gb|EGE53513.1| translation metalloprotein YbeY [Streptococcus parauberis NCFD 2020] Length = 176 Score = 93.9 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 70/176 (39%), Gaps = 26/176 (14%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ + +++ E EI +T + FA ++ E+S+ F + Sbjct: 7 LDNKDMYIEMIDETGQVSQEIMKQTKDLLNFAAT---------KTGKDQKEMSVTFVTNE 57 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCS-----------------SLMLGDIVLAY 108 R LN EYR D+PT+V+S +G++ ++ Sbjct: 58 RSHELNLEYRDTDRPTDVISLEYKPEIPILFDQGDMEADPDLAEMMAEFDAYIGELFISI 117 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + + +A G FE + L +HGFLH+ GYDH + M L+ IL G+ Sbjct: 118 DKAKEQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPAEEKEMFTLQEEILTAYGL 173 >gi|284106930|ref|ZP_06386310.1| metalloprotease [Candidatus Poribacteria sp. WGA-A3] gi|283830003|gb|EFC34280.1| metalloprotease [Candidatus Poribacteria sp. WGA-A3] Length = 151 Score = 93.9 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 3/113 (2%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI 110 E E+ + R+ LN YR D+ T+VL+F A + +LGD+V++ Sbjct: 31 DEAEAEVCIGLVGDTRMRRLNRTYRNQDRTTDVLAFAYREAQTGASP--LLGDVVISVPA 88 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDL 162 +A + ++ L+IHG LHL+GYDH + A M E E Sbjct: 89 ARRQAKARSHSLDEEVLRLLIHGVLHLVGYDHERSQWQARRMRRKETECFETF 141 >gi|297571542|ref|YP_003697316.1| hypothetical protein Arch_0975 [Arcanobacterium haemolyticum DSM 20595] gi|296931889|gb|ADH92697.1| protein of unknown function UPF0054 [Arcanobacterium haemolyticum DSM 20595] Length = 170 Score = 93.9 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 12/151 (7%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 +++ E+ L + E+ +LS+V D + L+ Sbjct: 2 IEVNDESGFEPAP-QLEEISELA-------TWVLDDLRVHQQSDLSIVMLDEEAMSALHV 53 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCS----SLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 E+ ++ PT+V+SFP MLGDI + ++ +A G ++ Sbjct: 54 EWMDLEGPTDVMSFPMDELRPTPLGVEPTPGMLGDIAICPQVAARQALAAGHNTMEEILL 113 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L HG LHLLGYDH + + M L+R +L Sbjct: 114 LTTHGILHLLGYDHAEPDEKKEMFELQRRLL 144 >gi|225848714|ref|YP_002728877.1| hypothetical protein SULAZ_0899 [Sulfurihydrogenibium azorense Az-Fu1] gi|225644244|gb|ACN99294.1| conserved hypothetical protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 150 Score = 93.9 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 46/139 (33%), Positives = 77/139 (55%), Gaps = 6/139 (4%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 E++ + + + KAV ++ +E+S+ TD+ I+++N E+R DKPT+V Sbjct: 9 KEVYDKEITKEFVKKAVEQILKNLQL---ENIEISITLTDNDTIKSINKEWRNKDKPTDV 65 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 LSFP G +LGD++++ + +A +G ++ +V L+ HG LHLLGYDH Sbjct: 66 LSFPFGDT--IGYKYRVLGDVIISLPYAKKQAQEIGFSYKQEIVRLLTHGILHLLGYDHE 123 Query: 144 D-DKDACVMEGLERSILED 161 ++DA VM L+ I E Sbjct: 124 TNEEDAKVMFNLQDKIFEK 142 >gi|302877838|ref|YP_003846402.1| hypothetical protein Galf_0596 [Gallionella capsiferriformans ES-2] gi|302580627|gb|ADL54638.1| protein of unknown function UPF0054 [Gallionella capsiferriformans ES-2] Length = 153 Score = 93.9 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 66/157 (42%), Gaps = 17/157 (10%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L +AV+ + R A+ V L+L D LN Sbjct: 12 LSLAVQYVSAAQNLPARPQWRRWIKAALQR-----------DVSLALRIVDEAEGRELNK 60 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 YRG D TNVL+F + GD+V+ ++ EA K+ H HL IH Sbjct: 61 AYRGRDYATNVLTFVYDEDD------HLSGDVVICAPVVAREATEQDKDLLTHYAHLAIH 114 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 LHL GYDH D +A ME LE +++ LG DPY+ Sbjct: 115 AALHLQGYDHEVDAEAEEMEALETALMLKLGYPDPYK 151 >gi|225870933|ref|YP_002746880.1| hypothetical protein SEQ_1635 [Streptococcus equi subsp. equi 4047] gi|225700337|emb|CAW94643.1| conserved hypothetical protein [Streptococcus equi subsp. equi 4047] Length = 181 Score = 93.9 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 66/173 (38%), Gaps = 26/173 (15%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 + +++ E E+ + + L + + E+++ F + R Sbjct: 15 IMMYIEMIDETKQVSQEM---------MEQTIDLLNFAAKTIGKEDKEMAVTFVTNDRSH 65 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSD-----------------GCSSLMLGDIVLAYEII 111 LN EYR D+PT+V+S +G++ ++ + Sbjct: 66 ALNLEYRDTDRPTDVISLEYKPELPIAFSQEDLELDPDLAGMIQEFDAYIGELFISVDKA 125 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 126 HEQAEAYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEILTAYGL 178 >gi|184200942|ref|YP_001855149.1| hypothetical protein KRH_12960 [Kocuria rhizophila DC2201] gi|183581172|dbj|BAG29643.1| hypothetical protein [Kocuria rhizophila DC2201] Length = 168 Score = 93.9 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 3/123 (2%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL--- 99 ++ + E+S+ D R+ L+ ++ + T+V+SFP Sbjct: 35 ALAFERWHLHPDTEVSIAVVDEERMTQLHEQWLDLPGATDVMSFPMDELREGTPERPSLG 94 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGD+VL + +A G ++ L L H LHLLG+DH ++ + M +R +L Sbjct: 95 VLGDVVLCPPVAARQAAAAGHSTQDELCLLTAHSLLHLLGHDHAEEHERARMFAAQRGLL 154 Query: 160 EDL 162 E+ Sbjct: 155 EEF 157 >gi|229817682|ref|ZP_04447964.1| hypothetical protein BIFANG_02953 [Bifidobacterium angulatum DSM 20098] gi|229785471|gb|EEP21585.1| hypothetical protein BIFANG_02953 [Bifidobacterium angulatum DSM 20098] Length = 181 Score = 93.9 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 13/152 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + ++ E +W ++ + + V +L+++F D I + Sbjct: 1 MSVDVSNET-VWSIDLKVFSDLGVWV---------MDQMRVSTQSDLTILFVDPDPIAQM 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIEIEANVLGKEFENHLV 127 + + ++ PT+V+SFP S++M LGDIV+ + +A G ++ Sbjct: 51 HMHWMNLEGPTDVMSFPMDELRPGNGSTVMEGVLGDIVICPWVAAQQAAAAGHGVLQEML 110 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L IHG LHLLGYDHV+ + M GL+R +L Sbjct: 111 LLTIHGILHLLGYDHVNAEQERQMFGLQRQLL 142 >gi|331270001|ref|YP_004396493.1| hypothetical protein CbC4_1822 [Clostridium botulinum BKT015925] gi|329126551|gb|AEB76496.1| protein of unknown function UPF0054 [Clostridium botulinum BKT015925] Length = 166 Score = 93.9 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 21/167 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N D+I + + ++ + + E+S++F D+ I+ +N E Sbjct: 2 IYIDNR--QDKIKIDEKILETVKEIINYTLKEEEVKVN--TEVSVIFIDNSTIKEINKET 57 Query: 75 RGIDKPTNVLSFPTAFASSDG-----------------CSSLMLGDIVLAYEIIEIEANV 117 R IDK T+VLSFP L+LGDIVL+ E E ++ Sbjct: 58 RDIDKVTDVLSFPMLDYLQGKIYKETYKDYEFDASYLDEGELVLGDIVLSLERAEEQSKD 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G F + +L +H LHLLGYDH++++D M E ILE I Sbjct: 118 FGHSFLREVCYLTVHSVLHLLGYDHMEEEDKVRMRKREEEILEKFSI 164 >gi|327460959|gb|EGF07292.1| metalloprotease [Streptococcus sanguinis SK1057] Length = 165 Score = 93.9 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E EI +T + FA ++ E+++ F + R L Sbjct: 1 MYIEMVDETGQVSKEILKQTQEILEFAA---------QKTGKDNKEMAVTFVSNARSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPELDIAVDEEDLLDHPELAEMLEDFDAYIGELFISVDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|154483546|ref|ZP_02025994.1| hypothetical protein EUBVEN_01250 [Eubacterium ventriosum ATCC 27560] gi|149735456|gb|EDM51342.1| hypothetical protein EUBVEN_01250 [Eubacterium ventriosum ATCC 27560] Length = 166 Score = 93.5 bits (231), Expect = 8e-18, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 20/167 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I +EN + EI + + K V + + E+++ D++ I +N Sbjct: 1 MNIYIENE-YDREIDVD--YTDIINKVVCQAVD--FIKCPYECEVNVTIVDNNTIHEINR 55 Query: 73 EYRGIDKPTNVLSFPTAF---------------ASSDGCSSLMLGDIVLAYEIIEIEANV 117 E R ID+PT+VLSFP + L+LGDIV++Y+ + +A Sbjct: 56 EQRKIDRPTDVLSFPMLDYEVAGDFSMAEDDISNFNPDSGELILGDIVISYDKVIEQAAE 115 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + L L+ H LHL G+DH+ D + ME + IL +LGI Sbjct: 116 YNHSRKRELAFLVAHSMLHLFGFDHMVDDERIEMEEKQNIILNNLGI 162 >gi|301300991|ref|ZP_07207154.1| translation metalloprotein YbeY [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851407|gb|EFK79128.1| translation metalloprotein YbeY [Lactobacillus salivarius ACS-116-V-Col5a] Length = 159 Score = 93.5 bits (231), Expect = 8e-18, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 19/166 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL+I + E L + V S Y E+S+ ++ +I + Sbjct: 1 MDLEIFDDTNSVPAE--KIQLVKDVLE------FSGKYLELPEDTEMSVTLMNNEQIHEI 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG-----------CSSLMLGDIVLAYEIIEIEANVLG 119 N +YRG+DK T+V+SF D +GD++++ + ++ +A LG Sbjct: 53 NLKYRGVDKATDVISFAIEEDDPDELPIILPDYVDFEEPKNIGDMMISMDKVKEQAEYLG 112 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + L L +HGFLHL GYDH+ +D VM L+R IL+ G+ Sbjct: 113 HSEDRELGFLTVHGFLHLNGYDHMKAEDEKVMFKLQRDILDAYGLK 158 >gi|126314349|ref|XP_001365786.1| PREDICTED: similar to C21orf57 isoform A protein [Monodelphis domestica] Length = 166 Score = 93.5 bits (231), Expect = 8e-18, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 51/116 (43%), Gaps = 7/116 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA-------SSDGCSSLMLGDIVLA 107 +L +V D+ I+ LN YR PT+VLSFP + L LGDI L Sbjct: 35 FDLGVVCVDNQGIQRLNRIYRQAHGPTDVLSFPFHEDLRAGAVPQPECPDDLNLGDIFLG 94 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 E I + G+ + + L HG HLLGY H + M E+ LE+L Sbjct: 95 VEYIFHQCQENGENYYDILTVTAAHGLCHLLGYKHNTAAEWREMFQKEKLTLEELN 150 >gi|262037729|ref|ZP_06011171.1| putative metalloprotease [Leptotrichia goodfellowii F0264] gi|261748201|gb|EEY35598.1| putative metalloprotease [Leptotrichia goodfellowii F0264] Length = 154 Score = 93.5 bits (231), Expect = 8e-18, Method: Composition-based stats. Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 4/155 (2%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L+ I E + + E + N + Y EN LSL+ D+ I Sbjct: 1 MLECDITYEINEIEEFLD-EKKIENFIKFILENEFKEEY--SENDYYLSLLIADNKIIRK 57 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N EYR D T+V+SF + G ++ LGDI+++ E ++ +A G E ++ Sbjct: 58 INKEYRNKDLETDVISFAYNETENIGGMNV-LGDIIISLERVKSQAEDYGHSEEREFYYV 116 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + HG LHLLGYDH++++D VM E IL+ Sbjct: 117 LCHGMLHLLGYDHIEEEDKKVMREKEEKILKQFNY 151 >gi|168281735|ref|ZP_02689402.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182675946|gb|EDT87851.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 155 Score = 93.5 bits (231), Expect = 8e-18, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 5/141 (3%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 +I L F + + +K K+ E F D I+ +N YR D T+V Sbjct: 10 KKIFNHKLYSQRFKQITDLVSTKLNIDKKRFFEC--HFVDEKTIQEINRNYRNKDYITDV 67 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +SF + +LG++ + Y+ + +AN FE L L HG LHLLGYDH+ Sbjct: 68 ISFAFDDGEII---TPLLGEMYICYQKVVDQANQFAHSFERELCFLFTHGLLHLLGYDHM 124 Query: 144 DDKDACVMEGLERSILEDLGI 164 +D +M L+ IL +L I Sbjct: 125 KIEDEKIMFALQDEILNELKI 145 >gi|33519779|ref|NP_878611.1| hypothetical protein Bfl316 [Candidatus Blochmannia floridanus] gi|46577400|sp|Q7VRA3|RRMF_BLOFL RecName: Full=Probable rRNA maturation factor gi|33504124|emb|CAD83386.1| predicted metal-dependent hydrolase [Candidatus Blochmannia floridanus] Length = 153 Score = 93.5 bits (231), Expect = 8e-18, Method: Composition-based stats. Identities = 49/129 (37%), Positives = 69/129 (53%), Gaps = 2/129 (1%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 + I K +F + +EL++ D + LN+ Y G PTNVLSFP Sbjct: 22 NNKIKLWIKKIFFSSKKKIELTIRIVDIQEMLYLNWYYLGKKYPTNVLSFPFE--PPSEI 79 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 + +LGDIV+ +IIE E + H H+IIHG LHLLGYDH+ D+DA +M +E Sbjct: 80 QTSLLGDIVICKQIIEYENRKNNIFSDVHWAHMIIHGSLHLLGYDHICDEDAELMNAMEL 139 Query: 157 SILEDLGIN 165 +I+ LG Sbjct: 140 NIIRTLGYK 148 >gi|331701378|ref|YP_004398337.1| metalloprotease ybeY [Lactobacillus buchneri NRRL B-30929] gi|329128721|gb|AEB73274.1| metalloprotease ybeY [Lactobacillus buchneri NRRL B-30929] Length = 161 Score = 93.5 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 19/167 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL+I + E + L V + Y + E+S+ ++ I + Sbjct: 1 MDLEIYDKTEKGVSEKD-QKLIRDVLE------FAGSYIHLADNTEMSMTLVNNDEIHQI 53 Query: 71 NFEYRGIDKPTNVLSFPTA------------FASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N +YRG+D+ T+V+SF +GDI ++ + + +A+ L Sbjct: 54 NKKYRGVDRATDVISFAIEDDDDDDDFPIVMDEELKESIPENIGDIFVSVDKVAEQADYL 113 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G FE L L +HGFLHL GYDH+ DA VM L++ IL G+ Sbjct: 114 GHSFERELGFLCVHGFLHLNGYDHMKKADADVMFPLQKEILNAYGLK 160 >gi|83319995|ref|YP_424481.1| hypothetical protein MCAP_0508 [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123535679|sp|Q2SRY2|RRMF_MYCCT RecName: Full=Probable rRNA maturation factor gi|83283881|gb|ABC01813.1| conserved hypothetical protein, TIGR00043 [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 164 Score = 93.5 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 10/153 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L + + + + FA + I+ YF +ELS+ F D + + Sbjct: 1 MLKINYFNDTDVNMNSWKK-------FANKILK-IAYNYFNFNYDIELSITFVDDLKAQQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 +N +YR +V SFP ++ LGD+ + + +A + + + Sbjct: 53 INQQYRNHSYIADVTSFPVEMTENEIKAIGFRELGDMFINLSEAKRKAIKYNHDLNSEMG 112 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 L +HGFLHLLGYDH + D +M L+ IL+ Sbjct: 113 FLFVHGFLHLLGYDHENLDDEKIMFDLQDQILK 145 >gi|55820696|ref|YP_139138.1| putative metalloprotease [Streptococcus thermophilus LMG 18311] gi|55822587|ref|YP_141028.1| putative metalloprotease [Streptococcus thermophilus CNRZ1066] gi|116627504|ref|YP_820123.1| putative metalloprotease [Streptococcus thermophilus LMD-9] gi|62901187|sp|Q5M0P3|RRMF_STRT1 RecName: Full=Probable rRNA maturation factor gi|62901191|sp|Q5M579|RRMF_STRT2 RecName: Full=Probable rRNA maturation factor gi|122267898|sp|Q03LJ5|RRMF_STRTD RecName: Full=Probable rRNA maturation factor gi|55736681|gb|AAV60323.1| conserved hypothetical protein [Streptococcus thermophilus LMG 18311] gi|55738572|gb|AAV62213.1| conserved hypothetical protein [Streptococcus thermophilus CNRZ1066] gi|116100781|gb|ABJ65927.1| Predicted metal-dependent hydrolase [Streptococcus thermophilus LMD-9] gi|312278022|gb|ADQ62679.1| Putative metalloprotease [Streptococcus thermophilus ND03] Length = 165 Score = 93.5 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E +EI +TL + FA + + E+++ F + R L Sbjct: 1 MYVEMIDETGQVSEEIKKQTLELLDFAA---------QKLGKKDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPELDITFDEEDLAENPELAEMMGEFDSYIGELFISIDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G +E + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSYEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|90961874|ref|YP_535790.1| hypothetical protein LSL_0897 [Lactobacillus salivarius UCC118] gi|122449026|sp|Q1WTU0|RRMF_LACS1 RecName: Full=Probable rRNA maturation factor gi|90821068|gb|ABD99707.1| Conserved hypothetical protein [Lactobacillus salivarius UCC118] Length = 159 Score = 93.5 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 19/166 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL+I + E L + V S Y E+S+ ++ +I + Sbjct: 1 MDLEIFDDTNSVPAE--KIQLVKDVLE------FSGKYLELPEDTEMSVTLMNNEQIHEI 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG-----------CSSLMLGDIVLAYEIIEIEANVLG 119 N +YRG+DK T+V+SF D +GD++++ + ++ +A LG Sbjct: 53 NLKYRGVDKATDVISFAIEEDDPDELPIILPDDVDFEEPKNIGDMMISMDKVKEQAEYLG 112 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + L L +HGFLHL GYDH+ +D VM L+R IL+ G+ Sbjct: 113 HSEDRELGFLTVHGFLHLNGYDHMKAEDEKVMFKLQRDILDAYGLK 158 >gi|85859387|ref|YP_461589.1| metal-dependent hydrolase [Syntrophus aciditrophicus SB] gi|123516585|sp|Q2LTL4|RRMF_SYNAS RecName: Full=Probable rRNA maturation factor gi|85722478|gb|ABC77421.1| predicted metal-dependent hydrolase [Syntrophus aciditrophicus SB] Length = 160 Score = 93.5 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 10/157 (6%) Query: 5 KVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 K R+ + IA+ N +I LR + V L+ V E+SL+F D Sbjct: 2 KRAFERMSMAIAIRNQQKKVKIDLRQ-----IRRRVQKLLR---LVDCREKEISLLFVDD 53 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 I+ +N Y G + PTNV+SF + + +LGDIV++ + +A + Sbjct: 54 EEIQEINQRYLGRNYPTNVISFSLSEGEFSSVNPDVLGDIVISVDTASRDAERGNIPVSD 113 Query: 125 HLVHLIIHGFLHLLGYDHVDD--KDACVMEGLERSIL 159 L LIIHG LH+LGY+H ++ ++ M+ E+ + Sbjct: 114 ELDFLIIHGLLHILGYNHENNNPEETACMQKKEQELF 150 >gi|77465599|ref|YP_355102.1| hypothetical protein RSP_3598 [Rhodobacter sphaeroides 2.4.1] gi|126464038|ref|YP_001045151.1| hypothetical protein Rsph17029_3283 [Rhodobacter sphaeroides ATCC 17029] gi|123590065|sp|Q3IW83|RRMF_RHOS4 RecName: Full=Probable rRNA maturation factor gi|77390017|gb|ABA81201.1| Protein of unknown function UPF0054 [Rhodobacter sphaeroides 2.4.1] gi|126105849|gb|ABN78379.1| protein of unknown function UPF0054 [Rhodobacter sphaeroides ATCC 17029] Length = 167 Score = 93.5 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 19/169 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++ +E+ W +E+ L L ++ L L ++ D RI LN Sbjct: 5 VETVIEDGRW-EELDLPALATRAAEATLAALDMPAEGF-----TLVVMGCDDARIAELNG 58 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSS-------------LMLGDIVLAYEIIEIEANVLG 119 +R KPTNVLS+P+ +S+ LGD+ +A+E + EA G Sbjct: 59 AFRQKGKPTNVLSWPSEERASEEPGMAPEPPEPGDPEDPEPLGDVAIAFETCQREAAEQG 118 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K +H+ HL++HG LHLLGYDHV++ D +ME E IL LG+ DPY Sbjct: 119 KPVTDHVTHLLVHGVLHLLGYDHVEEADGDLMEATETRILAGLGVPDPY 167 >gi|86606284|ref|YP_475047.1| hypothetical protein CYA_1624 [Synechococcus sp. JA-3-3Ab] gi|86554826|gb|ABC99784.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab] Length = 198 Score = 93.5 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 8/144 (5%) Query: 25 EIHLRTLCEVV-FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 E+++ + E + + + + + ELSL T I LN E+R ID PT+V Sbjct: 45 ELNVPSPVEEATWHRWFEVWLRELGV--TDPCELSLCLTSDEHIRQLNREFRHIDAPTDV 102 Query: 84 LSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 L+F +LGDIV++ +A G+ L L HG LHLL Sbjct: 103 LAFAAEETSTPVELQKITGVRLLGDIVISVPTACAQAKAQGQRLSRELAWLASHGLLHLL 162 Query: 139 GYDHVDDKDACVMEGLERSILEDL 162 G+DH D+ M + +L + Sbjct: 163 GWDHPDELSLQRMLQQQHHLLAAI 186 >gi|26553790|ref|NP_757724.1| hypothetical protein MYPE3350 [Mycoplasma penetrans HF-2] gi|29428203|sp|Q8EW68|RRMF_MYCPE RecName: Full=Probable rRNA maturation factor gi|26453797|dbj|BAC44128.1| conserved hypothetical protein [Mycoplasma penetrans HF-2] Length = 150 Score = 93.5 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 10/155 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 D+QI E + ++ K VS I +K I+ L D++ + Sbjct: 1 MFDVQIFDEKKFLSKK-------DISLIKKVSKFIFIEEKLKNKII-FELHIIDNNESQK 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N +YR D PT+V+SF + +LG+I L+YE + +A FE L L Sbjct: 53 INKQYRNKDYPTDVISFSFWEE--GLLKTALLGEIYLSYEKVVSQAEEFKHSFERELGFL 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + HG HLLGYDH ++ +A +M G + +L+ G+ Sbjct: 111 VSHGIYHLLGYDHEEEDEAKIMFGKQYQVLKLCGL 145 >gi|293400676|ref|ZP_06644821.1| putative metalloprotease [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305702|gb|EFE46946.1| putative metalloprotease [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 162 Score = 93.5 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 11/163 (6%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 +K+ + + N + V A+ ++S S++F Sbjct: 1 MKESVFLM---NVIINNQSSEKRWNRYKKDFVAIAERTKMILSLS-----QDYNASIIFV 52 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL---MLGDIVLAYEIIEIEANVLG 119 D I +N EYR ID+PT+V+SF LGDI + + + +A G Sbjct: 53 DPAMIHEINREYRHIDRPTDVISFALKDEEDTYEMMEGLDELGDIFINVQAVVDQAAEYG 112 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L HG LHLLGYDH++ D +M L+ IL+ + Sbjct: 113 HSLRREVCFLFTHGLLHLLGYDHMEKDDEKIMFALQDVILDAI 155 >gi|210612672|ref|ZP_03289420.1| hypothetical protein CLONEX_01622 [Clostridium nexile DSM 1787] gi|210151474|gb|EEA82482.1| hypothetical protein CLONEX_01622 [Clostridium nexile DSM 1787] Length = 164 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 17/154 (11%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + L CE + K + + Y E++L+ T + I+ +N +RGID+ T+VLS Sbjct: 11 LKLSLPCEELAVKVIEMALD--YAKCPYEAEVNLLLTMNDEIQEMNRNFRGIDRATDVLS 68 Query: 86 FPTAFAS---------------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 FP + LMLGDIV++ E + +A G E LI Sbjct: 69 FPMVDYETAGSFSFLEDALEYFNPESGELMLGDIVISKEKVVSQAEEYGHSIEREYAFLI 128 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 H LHL G+DH+++++ VME + ILE L I Sbjct: 129 AHSMLHLFGFDHMEEEERAVMERKQAEILERLQI 162 >gi|304385069|ref|ZP_07367415.1| metal-dependent hydrolase [Pediococcus acidilactici DSM 20284] gi|304329263|gb|EFL96483.1| metal-dependent hydrolase [Pediococcus acidilactici DSM 20284] Length = 157 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 16/164 (9%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D+QI + + A + + Y + E+S+ + I+ Sbjct: 1 MMDIQIFDHTE------EVPQQHLDLIANILD--FAGNYLKLDVATEISVTLMHNDEIQK 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCS--------SLMLGDIVLAYEIIEIEANVLGKE 121 +N EYR +D+PT+V+SF D +GD++++ + + +A LG Sbjct: 53 INREYRNVDRPTDVISFAINDEDEDIIMDPEMAEEIPDNIGDLMISVDKVAEQAEFLGHS 112 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +E L L +HGFLHL GYDH+ +D M L++ I+ G+ Sbjct: 113 YERELGFLCVHGFLHLNGYDHMKKEDQEKMFPLQKEIMSAYGLE 156 >gi|167746974|ref|ZP_02419101.1| hypothetical protein ANACAC_01686 [Anaerostipes caccae DSM 14662] gi|167653934|gb|EDR98063.1| hypothetical protein ANACAC_01686 [Anaerostipes caccae DSM 14662] Length = 165 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 63/122 (51%), Gaps = 15/122 (12%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC---------------SS 98 E++L+ ++ I +N E RGID+PT+VLSFP GC Sbjct: 37 ECEVNLMLVGNNEIHRINLEQRGIDRPTDVLSFPMVEYEKPGCFDGLEEDPAAFHPDSGE 96 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LMLGDIV++ + + +A G E LI H LHL GYDH++D++ VME + I Sbjct: 97 LMLGDIVISMDKAKEQAEAYGHSLEREYAFLIAHSMLHLFGYDHMEDEERAVMEEKQEEI 156 Query: 159 LE 160 L+ Sbjct: 157 LQ 158 >gi|124024428|ref|YP_001018735.1| metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9303] gi|123964714|gb|ABM79470.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9303] Length = 187 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 62/150 (41%), Gaps = 8/150 (5%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELS------LVFTDSHRIETLNF 72 +A + + + + ++ IV LS L TD I LN Sbjct: 30 DADTKRRLTNASPWQQDLTAWIESVRRDPTLTCPEIVRLSPMLSLGLQLTDDATITELNH 89 Query: 73 EYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 +R + T+VLSFP S + + LGDIV++ + + +A E L L+ Sbjct: 90 AWRQRSETTDVLSFPALDNSLVLPTDTCVELGDIVVSVQTAQRQAKQHSHELGLELRWLV 149 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILE 160 HG LHLLG+DH D+ M + +L Sbjct: 150 SHGLLHLLGWDHPTDQSLKTMLSYQEQLLS 179 >gi|162447804|ref|YP_001620936.1| hypothetical protein ACL_0950 [Acholeplasma laidlawii PG-8A] gi|189040645|sp|A9NGT0|RRMF_ACHLI RecName: Full=Probable rRNA maturation factor gi|161985911|gb|ABX81560.1| conserved hypothetical protein [Acholeplasma laidlawii PG-8A] Length = 137 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 5/126 (3%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 ++ + + + ++F D+ +I +N YR IDKPT+V+SFP D Sbjct: 16 FEVILETVFKDIKEEKSMQVIFVDNDQIRDINKMYRNIDKPTDVISFPNDDEKDDS---- 71 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 LGDI ++ + +I+A G E + L +HG+LHLLGYDH + + M L+ IL Sbjct: 72 -LGDIFISIDQAKIQALDYGHTLEREIGFLAVHGYLHLLGYDHHTEAEEKEMFTLQEEIL 130 Query: 160 EDLGIN 165 + Sbjct: 131 NKANLK 136 >gi|157150959|ref|YP_001450012.1| putative metalloprotease [Streptococcus gordonii str. Challis substr. CH1] gi|189040587|sp|A8AW52|RRMF_STRGC RecName: Full=Probable rRNA maturation factor gi|157075753|gb|ABV10436.1| conserved hypothetical protein TIGR00043 [Streptococcus gordonii str. Challis substr. CH1] Length = 165 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I E L +EI +T + FA + E+++ F + R L Sbjct: 1 MYIEIVDETGLVSEEIIKQTQDILEFAA---------QKTGKEKKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPELDIAVDEEDLLNHPELAEMLDDFDAYIGELFISVDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G F+ + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFKREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|296876079|ref|ZP_06900133.1| probable metalloprotease [Streptococcus parasanguinis ATCC 15912] gi|296432790|gb|EFH18583.1| probable metalloprotease [Streptococcus parasanguinis ATCC 15912] Length = 165 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E DEI +T + FA + + E+++ F + R L Sbjct: 1 MYIEMVDETGQVSDEILKQTQEILEFAAK---------KIGKEDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPEMEISFDEEDLAENPELAEMMAEFDTYIGELFISIDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFGLQEEILTAYGL 162 >gi|262277763|ref|ZP_06055556.1| conserved hypothetical protein [alpha proteobacterium HIMB114] gi|262224866|gb|EEY75325.1| conserved hypothetical protein [alpha proteobacterium HIMB114] Length = 150 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 73/151 (48%), Gaps = 3/151 (1%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + I+ ++ +W + T E + I +E+S++ T++ ++ + Sbjct: 1 MHKIHISCDSKIW---LKDSTNVEKKIKNILKKSIMSEKKFLSKNIEISVLLTNTKKMTS 57 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN++YR K T++LSFP+ + + + G EFE +L + Sbjct: 58 LNYKYRNKKKDTDILSFPSEKPNFFKKKLKQKNIYLGDLALSFNYIKKQGIEFEEYLKKM 117 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 ++HGFLHL+GYDH ++K+ ME ++ IL+ Sbjct: 118 LVHGFLHLIGYDHDNEKNFLKMEKIQNKILK 148 >gi|168181634|ref|ZP_02616298.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum Bf] gi|237796401|ref|YP_002863953.1| putative metalloprotease [Clostridium botulinum Ba4 str. 657] gi|259646946|sp|C3L3F6|RRMF_CLOB6 RecName: Full=Probable rRNA maturation factor gi|182675188|gb|EDT87149.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum Bf] gi|229263327|gb|ACQ54360.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum Ba4 str. 657] Length = 166 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 21/167 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N ++I + E + + + + E+S+VF D++ I+ +N +Y Sbjct: 2 IYIDNR--QNKIKVNEEFENKIKEIIDYALKEEKV--NIDYEISVVFIDNNSIKEINKDY 57 Query: 75 RGIDKPTNVLSFPT-----------------AFASSDGCSSLMLGDIVLAYEIIEIEANV 117 R IDK T+VLSFP S +L+LGDI L+ E E ++ Sbjct: 58 RNIDKATDVLSFPMLDYEEGKVFKDVYLNYEFDESDLDEGNLILGDIALSLEKAEEQSKE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G F +L IH LHLLGYDH+++++ +M E IL+ + Sbjct: 118 FGHSFLRETCYLTIHSVLHLLGYDHMEEEEKAIMRQREEEILKSFNL 164 >gi|238544550|dbj|BAH60902.1| hyphothetical protein [Desulfotignum balticum] Length = 140 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 2/113 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+S+V D +I+ LN +RGID+PTNVLSFP + +LGD+V++ + EA Sbjct: 24 EISIVIMDDLQIKELNHSFRGIDRPTNVLSFPMQEGEFSDITPGLLGDVVISAQTAAREA 83 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGINDP 167 G + + L+IHG LHL+G+DH K DA ME +L L +P Sbjct: 84 QEAGITLDERMSQLLIHGILHLVGFDHETSKADADDMETKSCELL-RLVEPNP 135 >gi|148240663|ref|YP_001226050.1| metal-dependent hydrolase [Synechococcus sp. WH 7803] gi|147849202|emb|CAK24753.1| Predicted metal-dependent hydrolase [Synechococcus sp. WH 7803] Length = 200 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 8/147 (5%) Query: 25 EIHLRTLCEVVFAKAVSNLISK------GYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 + L + + + L + L L FT I LN +RG+ Sbjct: 34 RLQNPELWQSDLCRWLETLRENRVDPTVPELTACEEISLGLQFTGDQEIAELNGRWRGLP 93 Query: 79 KPTNVLSFPT--AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 +PT+VLSF + ++L LGDIV++ +A G E L L+ HG LH Sbjct: 94 QPTDVLSFAALESEMPLQQTTTLELGDIVVSVPTAARQALEQGHSLERELQWLVSHGLLH 153 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLG 163 LLG+DH D+ M + +L G Sbjct: 154 LLGWDHPDEPTLNAMIACQERLLAMAG 180 >gi|167755644|ref|ZP_02427771.1| hypothetical protein CLORAM_01159 [Clostridium ramosum DSM 1402] gi|237734392|ref|ZP_04564873.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167704583|gb|EDS19162.1| hypothetical protein CLORAM_01159 [Clostridium ramosum DSM 1402] gi|229382622|gb|EEO32713.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 153 Score = 92.8 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 8/156 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ A+ N G + +A L E +ELS + D +I + Sbjct: 1 MEIDFALINEAAGFNEDYTDDYRSIINEAAKQL------GIEEDLELSCILVDDSKIHEI 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N EYR ID+ T+V+SF +GDI ++ + +++A G + + + Sbjct: 55 NKEYRKIDRATDVISFALEDNEQFYVPGMPRSIGDIFISVDHAKVQAEEYGHDLKREMCF 114 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L HG LHLLG+DH+ ++D M +++SIL+ L I Sbjct: 115 LFTHGLLHLLGFDHMIEEDEIQMIAMQKSILDALNI 150 >gi|297520691|ref|ZP_06939077.1| putative metalloprotease [Escherichia coli OP50] Length = 107 Score = 92.8 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 50/107 (46%), Positives = 65/107 (60%), Gaps = 2/107 (1%) Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 +LN YRG DKPTNVLSFP G +LGD+V+ +++E EA GK E Sbjct: 1 AESHSLNLTYRGKDKPTNVLSFPFEV--PPGMEMSLLGDLVICRQVVEKEAQEQGKPLEA 58 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 59 HWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 105 >gi|152981675|ref|YP_001352119.1| hypothetical protein mma_0429 [Janthinobacterium sp. Marseille] gi|172049086|sp|A6SV22|RRMF_JANMA RecName: Full=Probable rRNA maturation factor gi|151281752|gb|ABR90162.1| Hypothetical protein mma_0429 [Janthinobacterium sp. Marseille] Length = 152 Score = 92.8 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 53/163 (32%), Positives = 75/163 (46%), Gaps = 15/163 (9%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + +L L + + D I L A+ +++L F D+ Sbjct: 2 LQKNKLSLSVQYPDKRLQDIITRPKL-RSWVKAALLA-----------PAQITLRFVDAA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 + LN YRG D TNVL+F D S DI+L +++++EA K E H Sbjct: 50 EGKDLNRNYRGKDYATNVLTFAYTE---DEDSETTQADIILCTDVLQLEAAEQEKSVEEH 106 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL++HG LH GYDH D++A ME LE IL DLG +PY Sbjct: 107 AAHLVVHGVLHAQGYDHESDEEAEEMEALEIEILADLGFRNPY 149 >gi|325694803|gb|EGD36708.1| metalloprotease [Streptococcus sanguinis SK150] gi|332362401|gb|EGJ40201.1| metalloprotease [Streptococcus sanguinis SK1056] Length = 165 Score = 92.8 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E +EI +T + FA + E+++ F + R L Sbjct: 1 MYIEMVDETGQVSEEILKQTQEILEFAA---------QKTGKGNKEMAVTFVSNARSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPELDIAVDEEDLLDHPELAEMLEDFDAYIGELFISVDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|302039360|ref|YP_003799682.1| hypothetical protein NIDE4088 [Candidatus Nitrospira defluvii] gi|300607424|emb|CBK43757.1| conserved protein of unknown function, putative Metalloprotease [Candidatus Nitrospira defluvii] Length = 156 Score = 92.8 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 3/105 (2%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 LSL R+ LN +R DK T+VL+F T G S +LGD+V++ +A Sbjct: 37 LSLEIVGDVRMRRLNRTFRHRDKTTDVLAFATREGP--GPPSSLLGDVVISLPQAIRQAR 94 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILE 160 G+ ++ L L+IHG LHL GYDH + +A M E+++L Sbjct: 95 RHGQGVDHELAVLLIHGILHLCGYDHERSEAEAQRMSRREKALLR 139 >gi|322389991|ref|ZP_08063530.1| metalloprotease [Streptococcus parasanguinis ATCC 903] gi|321143304|gb|EFX38743.1| metalloprotease [Streptococcus parasanguinis ATCC 903] Length = 165 Score = 92.8 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E DEI +T + FA + + E+++ F + R L Sbjct: 1 MYIEMVDETGQVSDEILKQTQEILEFAA---------QKIGKEDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPEMEISFDEEDLTENPELAEMMAEFDTYIGELFISIDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFGLQEEILTAYGL 162 >gi|312868384|ref|ZP_07728584.1| translation metalloprotein YbeY [Streptococcus parasanguinis F0405] gi|311096129|gb|EFQ54373.1| translation metalloprotein YbeY [Streptococcus parasanguinis F0405] Length = 165 Score = 92.8 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E DEI +T + FA + + E+++ F + R L Sbjct: 1 MYIEMVDETGQVSDEILKQTQEILEFAA---------QKIGKEDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPEMEISFDEEDLAENPELAEMMAEFDTYIGELFISIDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFGLQEEILTAYGL 162 >gi|310659081|ref|YP_003936802.1| yqfg [Clostridium sticklandii DSM 519] gi|308825859|emb|CBH21897.1| YqfG [Clostridium sticklandii] Length = 157 Score = 92.8 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 44/120 (36%), Positives = 62/120 (51%), Gaps = 7/120 (5%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-------DGCSSLMLGDIV 105 VE+SL FT I+ +N ++R IDK T+VLSFP + LGDIV Sbjct: 37 KEVEISLTFTTDELIKEINSKHRNIDKATDVLSFPMYEKQELSDINTSISNFPVALGDIV 96 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ E +A G FE + L+ H HLLGYDH+ ++ +M + +LE LGIN Sbjct: 97 VSVERTFSQAEEYGHSFEREMAFLVCHSMFHLLGYDHMTKQEEGLMMEKQNKVLEALGIN 156 >gi|294101753|ref|YP_003553611.1| protein of unknown function UPF0054 [Aminobacterium colombiense DSM 12261] gi|293616733|gb|ADE56887.1| protein of unknown function UPF0054 [Aminobacterium colombiense DSM 12261] Length = 178 Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 7/140 (5%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 + CE V + V L Y + E+S+ + ++ +N EYRGID+PT+V Sbjct: 19 RALRKLEGCEEVLERVVQRLFQGRY--ENQQAEVSISIVSTTEMQEINREYRGIDQPTDV 76 Query: 84 LSFPTAFA-----SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 LSFP G L LGDI++ E++ A + L ++ HGFLHLL Sbjct: 77 LSFPMWEEGEEFCPPSGWEMLPLGDILICEEVVRENARQNNVSYIEELYLIVAHGFLHLL 136 Query: 139 GYDHVDDKDACVMEGLERSI 158 G DH + +M L+ I Sbjct: 137 GIDHDTVEKQEMMWSLQSII 156 >gi|323704189|ref|ZP_08115768.1| protein of unknown function UPF0054 [Thermoanaerobacterium xylanolyticum LX-11] gi|323536255|gb|EGB26027.1| protein of unknown function UPF0054 [Thermoanaerobacterium xylanolyticum LX-11] Length = 159 Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 63/164 (38%), Gaps = 17/164 (10%) Query: 13 LQIAVENALWG-DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 + I ++N D L + E V A+ F D+ I LN Sbjct: 1 MNILIDNRQDKVDAQGLDRIVEDVVRTALEVEGVVDDVEVSVS------FVDNEEIHKLN 54 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSL----------MLGDIVLAYEIIEIEANVLGKE 121 YR +DK T+VLSFP +GDIV++ E + +A G Sbjct: 55 KYYRNVDKETDVLSFPLVEFEEIYTDIDEEDDDLDEVQPIGDIVISLEKAKQQAEEYGHS 114 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 F + +L H HL+GYDH + + VM E ++ L I Sbjct: 115 FIREVAYLTAHSMFHLMGYDHETEDEKKVMRAKEEEVMRRLKIE 158 >gi|187933939|ref|YP_001885105.1| metalloprotease [Clostridium botulinum B str. Eklund 17B] gi|238691633|sp|B2TM06|RRMF_CLOBB RecName: Full=Probable rRNA maturation factor gi|187722092|gb|ACD23313.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund 17B] Length = 166 Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 21/167 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I V+N E+ K + + + E+SL+F D+ I +N E Sbjct: 2 IYVDNRQEKMEVSDE--FTNHLEKVIEFALKEEGV--NISSEISLLFVDNEEIREINNET 57 Query: 75 RGIDKPTNVLSFPTAFASSDGC-----------------SSLMLGDIVLAYEIIEIEANV 117 R ID+ T+VLSFP L+LGD+VL+ E ++ Sbjct: 58 RNIDRATDVLSFPMLDYPEKKVFKEVYTENDFSEADFDGDDLVLGDVVLSLERALEQSKE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +E +L++H LHLLGYDH++++D M E IL L I Sbjct: 118 YNHSYEREASYLVVHSVLHLLGYDHMEEEDKVKMRKREEEILTALDI 164 >gi|148263839|ref|YP_001230545.1| hypothetical protein Gura_1782 [Geobacter uraniireducens Rf4] gi|146397339|gb|ABQ25972.1| protein of unknown function UPF0054 [Geobacter uraniireducens Rf4] Length = 129 Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 39/112 (34%), Positives = 53/112 (47%), Gaps = 2/112 (1%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 ELSL I LN +Y DKPTNV+SF + +LGD++++ + Sbjct: 12 PDSELSLTIVGDRSIRRLNRDYLERDKPTNVISFAMQEGLFGELNPEVLGDVIISADTAA 71 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVD--DKDACVMEGLERSILEDL 162 EA G F L L++HG LH+ GYDH + +A ME R I L Sbjct: 72 REAEEGGMPFFARLSFLLLHGILHITGYDHERSGESEARRMEAKAREIFGLL 123 >gi|327474676|gb|EGF20081.1| metalloprotease [Streptococcus sanguinis SK408] Length = 165 Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 17/152 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + E + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEEILKQTQEILEFAAQKTGKENKEMAVTFVSNARSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSL-----------------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAVDEEDLLDHPELAEMLEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|295099664|emb|CBK88753.1| conserved hypothetical protein TIGR00043 [Eubacterium cylindroides T2-87] Length = 151 Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 10/154 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ + V A + E + + + LS++F +I + Sbjct: 1 MEI-VIVNEAKDRSIYRYKKDYERILQRT------SDILNRHKDWSLSVIFVTPEQIHEI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 N EYR ID PT+V+SF SD S LGDI + + I +A G Sbjct: 54 NKEYRKIDCPTDVISFALQDDLSDVLIEESMCELGDIFINVQAIRDQAKEYGHSLRREAC 113 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L HG LHL+GYDH++ ++ VM L+ IL++ Sbjct: 114 FLFCHGLLHLMGYDHMEPEEEKVMFELQDVILDE 147 >gi|91762483|ref|ZP_01264448.1| hypothetical protein PU1002_04421 [Candidatus Pelagibacter ubique HTCC1002] gi|91718285|gb|EAS84935.1| hypothetical protein PU1002_04421 [Candidatus Pelagibacter ubique HTCC1002] Length = 153 Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 5/154 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + + E ALW +I F ++ K Y + L+++ +++ I+ Sbjct: 1 MIKIDVVSECALWSKKIK----RNKTFFNSILKFFPKKYKFIGKKINLTILLSNNKNIKK 56 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN ++R +KPT+VLSFP + S LGDIV++YE + N+ EF+ +V + Sbjct: 57 LNKDFRNKNKPTDVLSFPFEKKFNPK-KSNYLGDIVISYEFMNKPKNISILEFKQKVVKI 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 IHGFLHLLG+DH+ KD M E I + + Sbjct: 116 FIHGFLHLLGHDHIKLKDFKKMIKEEDLIYKFIK 149 >gi|326692991|ref|ZP_08229996.1| putative metalloprotease [Leuconostoc argentinum KCTC 3773] Length = 157 Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 8/130 (6%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS-------SDGC 96 + + E+S+ F ++ I+ N EYRG+DKPT+V+SF Sbjct: 27 FAGQALALPDNTEMSITFVNNDDIQRYNREYRGVDKPTDVISFAIEEGDDVFEQFAEIDE 86 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLE 155 + +GDI+++ ++I +A LG +E L L++HGFLHL GYDH+ D + M L+ Sbjct: 87 IAKNIGDIIVSVDVIATQAEYLGHSYERELGFLVVHGFLHLNGYDHMLGDAEEKEMFDLQ 146 Query: 156 RSILEDLGIN 165 R IL+D G+ Sbjct: 147 RKILDDYGLK 156 >gi|114567084|ref|YP_754238.1| metal-dependent hydrolase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122317921|sp|Q0AWN7|RRMF_SYNWW RecName: Full=Probable rRNA maturation factor gi|114338019|gb|ABI68867.1| metal-dependent hydrolase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 156 Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 8/149 (5%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 ++I+ + V + + ELS++ D+ I+ LN YRG + PT+ Sbjct: 9 QNKINYTKEMQQVILNVANAVAKMVKLSPN--TELSVMIVDNSYIKELNLIYRGENNPTD 66 Query: 83 VLSFPTAFASSDGC------SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 VLSF S + +LGDIV++ E ++ G E L +LI HG LH Sbjct: 67 VLSFAMNELSEEEMDLDLPGEVNVLGDIVVSLEKAVSQSEEYGHSAERELGYLIAHGMLH 126 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGIN 165 LLGYDH ++++ +M LE I+ + + Sbjct: 127 LLGYDHENEEERNLMRNLEERIMHKVKLE 155 >gi|116333396|ref|YP_794923.1| metal-dependent hydrolase [Lactobacillus brevis ATCC 367] gi|122269917|sp|Q03SD0|RRMF_LACBA RecName: Full=Probable rRNA maturation factor gi|116098743|gb|ABJ63892.1| Predicted metal-dependent hydrolase [Lactobacillus brevis ATCC 367] Length = 162 Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 13/132 (9%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS--------- 97 Y + E+S+ ++ I +N +YRG+D+ T+V+SF + Sbjct: 30 KYLKLADNTEMSVTLMNNEDIHRINQQYRGVDRATDVISFAIEDDDEEAADFPLVMDDEL 89 Query: 98 ----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 +GDI ++ + + +A+ LG +E L L++HGFLHL GYDH++ +D VM Sbjct: 90 AAEIPENIGDIFVSMDKVAEQADYLGHSYERELGFLVVHGFLHLNGYDHMEPEDEKVMFK 149 Query: 154 LERSILEDLGIN 165 L+ IL+ G+ Sbjct: 150 LQADILDAYGLK 161 >gi|159026769|emb|CAO89056.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 170 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 6/112 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD------GCSSLMLGDIVLAY 108 ELSL TD I+T N +YR D+PT+VL+F L LGDI+++ Sbjct: 51 YELSLRLTDDREIQTYNSQYRHKDQPTDVLAFAALEVDLPVDEGILETEPLYLGDIIISV 110 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E + +A L L H LHLLG+DH D+ M L+ ++L+ Sbjct: 111 ETAQQQALTQNHSLARELAWLTAHACLHLLGWDHPDETSLLEMLSLQETLLK 162 >gi|159902741|ref|YP_001550085.1| metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9211] gi|238687124|sp|A9BD43|RRMF_PROM4 RecName: Full=Probable rRNA maturation factor gi|159887917|gb|ABX08131.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9211] Length = 189 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 14/174 (8%) Query: 1 MSVKKVNLPRLDLQIA---------VENALWGDEIHLRTLCEVVFA--KAVSNLISKGYF 49 M N +DL + + N + +E R+ +V + N + Sbjct: 1 MLSASENRFEIDLDLVFHSYQDAHLINNIFFNNEALWRSNLKVWIDYVRRNDNYLCPAIV 60 Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVL 106 N + + L FTD I +N ++R ++PT+VLSFP + L LGDI++ Sbjct: 61 RSVNCLSIGLQFTDDKSIMKINQQWRAKEEPTDVLSFPVIDQDSIAPPPNHFLELGDIIV 120 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + + + +A+ + L L+ HG LHLLG+DH+++ M + +L+ Sbjct: 121 SVQTAQKQADENNHSLDKELCWLVSHGLLHLLGWDHLNEHSLDQMLSFQDKLLQ 174 >gi|331703461|ref|YP_004400148.1| hypothetical protein MLC_4420 [Mycoplasma mycoides subsp. capri LC str. 95010] gi|256384128|gb|ACU78698.1| putative metalloprotease [Mycoplasma mycoides subsp. capri str. GM12] gi|256384960|gb|ACU79529.1| putative metalloprotease [Mycoplasma mycoides subsp. capri str. GM12] gi|296456005|gb|ADH22240.1| putative metalloprotease [synthetic Mycoplasma mycoides JCVI-syn1.0] gi|328802016|emb|CBW54170.1| Conserved hypothetical protein [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 164 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 10/153 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + E + D + C + A YF +ELS+ F + + + Sbjct: 1 MIRINYFNETDINMDF--WKKFCNKILKTA------YNYFNFNYDIELSITFVNDLKAQQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 +N +YR +V SFP ++ LGD+ + + +A + + + Sbjct: 53 INQQYRNHSYIADVTSFPVEMTENEIKAIGFRELGDMFINLSEAKRKAIKYNHDLNSEMG 112 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 L +HGFLHLLGYDH D D +M L+ IL+ Sbjct: 113 FLFVHGFLHLLGYDHEDLNDEKIMFDLQDQILK 145 >gi|116629757|ref|YP_814929.1| metal-dependent hydrolase [Lactobacillus gasseri ATCC 33323] gi|238853406|ref|ZP_04643785.1| putative metalloprotease [Lactobacillus gasseri 202-4] gi|282851785|ref|ZP_06261148.1| metalloprotein, YbeY/ UPF0054family [Lactobacillus gasseri 224-1] gi|311110601|ref|ZP_07711998.1| putative metalloprotease [Lactobacillus gasseri MV-22] gi|122273305|sp|Q042Y1|RRMF_LACGA RecName: Full=Probable rRNA maturation factor gi|116095339|gb|ABJ60491.1| Predicted metal-dependent hydrolase [Lactobacillus gasseri ATCC 33323] gi|238833978|gb|EEQ26236.1| putative metalloprotease [Lactobacillus gasseri 202-4] gi|282557027|gb|EFB62626.1| metalloprotein, YbeY/ UPF0054family [Lactobacillus gasseri 224-1] gi|311065755|gb|EFQ46095.1| putative metalloprotease [Lactobacillus gasseri MV-22] Length = 175 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 82/158 (51%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE++ + + ++NL+ +K K+N E+S+ F S +I +N +YRG Sbjct: 5 DISFNDEVNFLKNDDKDWIPWITNLLLSAKKEINKKNAQEMSINFVSSEKIHEINKKYRG 64 Query: 77 IDKPTNVLSFPTAFA---------SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF + D +GD+ L E+I+ + F Sbjct: 65 KDRPTDVISFAIEDGLDEDFMAAFNDDPDFVEDIGDLFLCPEVIKRHSVEYETGFNREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HG+LHL G+DH++D +A VM G++ +L + G+ Sbjct: 125 YTLVHGYLHLNGFDHIEDDEAKVMFGIQGKVLREYGLP 162 >gi|39939110|ref|NP_950876.1| hypothetical protein PAM_624 [Onion yellows phytoplasma OY-M] gi|59799050|sp|Q6YPV1|RRMF_ONYPE RecName: Full=Probable rRNA maturation factor gi|39722219|dbj|BAD04709.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M] Length = 146 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 67/126 (53%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 +L+ K + + + L+F + +I+ LN YR + PT+VLSFP G Sbjct: 16 FKSLLIKMFLPIKEKKLMHLIFVTNEKIQELNSFYRQKNYPTDVLSFPNDLTFFAGLEDN 75 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 LGD+ +++ +++A E + L +HGFLHL GY H +++ +M L+ IL Sbjct: 76 SLGDVFISFSKAQVQAQTAKHSLEREIAFLAVHGFLHLKGYQHRTEEEFQIMLALQEKIL 135 Query: 160 EDLGIN 165 +++G+N Sbjct: 136 QNVGLN 141 >gi|221194510|ref|ZP_03567567.1| putative metalloprotease [Atopobium rimae ATCC 49626] gi|221185414|gb|EEE17804.1| putative metalloprotease [Atopobium rimae ATCC 49626] Length = 169 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 5/142 (3%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + E + ++++ V+ +V +S+ I T+N +R D T+V+S Sbjct: 15 PLIPEDEIISTCNFVLAQEKVVRPCMVSISV--VSDEEIRTVNRTWRNADAVTDVISLEV 72 Query: 89 AFASSD---GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 + + LGDI+LA I+ +A + +++H LHLLGYDH++D Sbjct: 73 ERPNDEDLAPGEPCELGDILLAPAYIKRQAATYHTTPADEFRLMLVHAMLHLLGYDHLND 132 Query: 146 KDACVMEGLERSILEDLGINDP 167 ++A ME E +++ + ++P Sbjct: 133 EEAECMEAREDALVAMIKTDNP 154 >gi|254432649|ref|ZP_05046352.1| hypothetical protein CPCC7001_2542 [Cyanobium sp. PCC 7001] gi|197627102|gb|EDY39661.1| hypothetical protein CPCC7001_2542 [Cyanobium sp. PCC 7001] Length = 194 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 58/146 (39%), Gaps = 19/146 (13%) Query: 33 EVVFAKAVSNLISKGYF-VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 + ++ L + ++ LSL D I LN E+R PT+VL+F Sbjct: 40 QQELQGWLTQLRPELPPRLQARAYSLSLSLVDDAGIAALNQEWREKPGPTDVLAFAAQDD 99 Query: 92 SSDGCSSL------------------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 DG L LGDIV++ + +A G E L L HG Sbjct: 100 DLDGLPPLAPGPASAGLEDELEEEPLELGDIVISVDTALRQAPEHGHSLEEELRFLASHG 159 Query: 134 FLHLLGYDHVDDKDACVMEGLERSIL 159 LHLLG+DH D+ M + ++L Sbjct: 160 LLHLLGWDHPDEASLATMLARQDALL 185 >gi|222056179|ref|YP_002538541.1| protein of unknown function UPF0054 [Geobacter sp. FRC-32] gi|221565468|gb|ACM21440.1| protein of unknown function UPF0054 [Geobacter sp. FRC-32] Length = 126 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 2/113 (1%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 ELS+ I +N +Y DK TNV+SF + MLGD+++ + Sbjct: 9 PDSELSISIVGDRTIRRINRDYLDRDKTTNVISFAMHEGDFSEINPQMLGDVIICADTAS 68 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVD--DKDACVMEGLERSILEDLG 163 EA F + L L++HG LH+ GYDH + +A ME ER I +L Sbjct: 69 REAEEGDMPFFSRLSFLLLHGILHITGYDHERSGETEAARMEFREREIFGNLN 121 >gi|332367329|gb|EGJ45064.1| metalloprotease [Streptococcus sanguinis SK1059] Length = 165 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 17/152 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + E + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEEILKQTQEILEFAAQKTGKEKKEMAVTFVSNARSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSL-----------------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAVDEEDLLDHPELAEMLEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|325687313|gb|EGD29335.1| metalloprotease [Streptococcus sanguinis SK72] Length = 165 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 17/152 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + E + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEEILKQTQEILEFAAQKTGKENKEMAVTFVSNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSL-----------------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAVDEEDLLDHPELAEMLDDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|300361844|ref|ZP_07058021.1| metal-dependent hydrolase [Lactobacillus gasseri JV-V03] gi|300354463|gb|EFJ70334.1| metal-dependent hydrolase [Lactobacillus gasseri JV-V03] Length = 175 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 82/158 (51%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE++ + + ++NL+ +K KEN E+S+ F S +I +N +YRG Sbjct: 5 DISFNDEVNFLNNDDKDWIPWITNLLLSAKKEINKENAQEMSINFVSSEKIHEINKKYRG 64 Query: 77 IDKPTNVLSFPTAFA---------SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF + D +GD+ L E+I+ + F Sbjct: 65 KDRPTDVISFAIEDGLDEDFMSAFNDDPDFVEDIGDLFLCPEVIKRHSVEYETGFNREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HG+LHL G+DH++D +A VM G++ +L + G+ Sbjct: 125 YTLVHGYLHLNGFDHIEDDEAKVMFGIQGKVLREYGLP 162 >gi|328946701|gb|EGG40839.1| putative metalloprotease [Streptococcus sanguinis SK1087] Length = 165 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 17/152 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + E + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEGILKQTQEILEFAAQKTGKENKEMAVTFVSNARSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSL-----------------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAVDEEDLLDHPELAEMLEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|170759303|ref|YP_001788261.1| putative metalloprotease [Clostridium botulinum A3 str. Loch Maree] gi|238688538|sp|B1KZM6|RRMF_CLOBM RecName: Full=Probable rRNA maturation factor gi|169406292|gb|ACA54703.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum A3 str. Loch Maree] Length = 166 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 21/167 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N ++I + E + + + + E+S++F D++ I+ +N +Y Sbjct: 2 IYIDNR--QNKIKVDEEFENKIKEIIDYALKEEKV--NIDYEISVIFIDNNSIKEINKDY 57 Query: 75 RGIDKPTNVLSFPT-----------------AFASSDGCSSLMLGDIVLAYEIIEIEANV 117 R IDK T+VLSFP S +L+LGDI L+ E E ++ Sbjct: 58 RNIDKATDVLSFPMLDYEEGEVFKDVYLNYEFDESDLDEGNLVLGDIALSLEKAEEQSKE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G F +L IH LHLLGYDH+++ + +M E IL+ + Sbjct: 118 FGHSFLRETCYLTIHSVLHLLGYDHMEEDEKAIMRQREEEILKSFNL 164 >gi|71083090|ref|YP_265809.1| hypothetical protein SAR11_0385 [Candidatus Pelagibacter ubique HTCC1062] gi|123647146|sp|Q4FNN3|RRMF_PELUB RecName: Full=Probable rRNA maturation factor gi|71062203|gb|AAZ21206.1| Conserved hypothetical protein [Candidatus Pelagibacter ubique HTCC1062] Length = 153 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 5/154 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + + E LW +I F ++ K Y + L+++ +++ I+ Sbjct: 1 MIKIDVVSECTLWSKKIK----RNKTFFNSILKFFPKKYKFIGKKINLTILLSNNKNIKK 56 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN ++R +KPT+VLSFP + S LGDIV++YE + N+ EF+ +V + Sbjct: 57 LNKDFRNKNKPTDVLSFPFEKKFNPK-KSNYLGDIVISYEFMNKPKNISILEFKQKVVKI 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 IHGFLHLLG+DH+ KD M E I + + Sbjct: 116 FIHGFLHLLGHDHIKLKDFKKMIKEEDLIYKFIK 149 >gi|322385837|ref|ZP_08059480.1| metalloprotease [Streptococcus cristatus ATCC 51100] gi|321270122|gb|EFX53039.1| metalloprotease [Streptococcus cristatus ATCC 51100] Length = 165 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 17/152 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + + + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSQEIIKQTQEILEFAAQKTGKENKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSL-----------------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAFDEEDLADNPELTEMLEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|262195532|ref|YP_003266741.1| hypothetical protein Hoch_2305 [Haliangium ochraceum DSM 14365] gi|262078879|gb|ACY14848.1| protein of unknown function UPF0054 [Haliangium ochraceum DSM 14365] Length = 172 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 16/165 (9%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L L + + ++ + + + +E+SL TD I Sbjct: 1 MLSLMV---DRAVAAQVPVPQRRRMRRRIERMLRAAALSEEPPRPLEVSLRLTDDDEIRA 57 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGDIVLAYEIIEIEANVLG---- 119 LN +YRG D PT+VL+F +G L LGD++++ + Sbjct: 58 LNRDYRGKDTPTDVLAFAMREGPQEGMPPLAAGEAEYLGDLIISVPTAAQQLARKRPMDV 117 Query: 120 ---KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + L+ L HG HLLGYDH DD + M +L + Sbjct: 118 PEREPLLAELLFLSAHGLCHLLGYDHQDDAEEAEMNARMAELLAE 162 >gi|187778471|ref|ZP_02994944.1| hypothetical protein CLOSPO_02065 [Clostridium sporogenes ATCC 15579] gi|187772096|gb|EDU35898.1| hypothetical protein CLOSPO_02065 [Clostridium sporogenes ATCC 15579] Length = 166 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 21/167 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N DEI + E + + + + E+S+VF D++ I+ +N +Y Sbjct: 2 IYIDNR--QDEIKVNEEFENKIKEIIDYALKEERV--NIDYEISVVFIDNNSIKEINKDY 57 Query: 75 RGIDKPTNVLSFPT-----------------AFASSDGCSSLMLGDIVLAYEIIEIEANV 117 R IDK T+VLSFP S +L+LGDI L+ E E ++ Sbjct: 58 RNIDKVTDVLSFPMLDYEEGKVFKDIYLNYEFDESDLDEGNLVLGDIALSLEKAEEQSKE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 F +L IH LHLLGYDH+ + + +M E IL++ + Sbjct: 118 FEHSFLRETCYLTIHSVLHLLGYDHIKEDEKAIMRQREEEILKNFNL 164 >gi|125718418|ref|YP_001035551.1| metalloprotease [Streptococcus sanguinis SK36] gi|166231428|sp|A3CP96|RRMF_STRSV RecName: Full=Probable rRNA maturation factor gi|125498335|gb|ABN45001.1| Conserved hypothetical protein [Streptococcus sanguinis SK36] Length = 165 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 17/152 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + E + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEEILKQTQEILEFAAQKTGKENKEMAVTFVSNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSL-----------------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAVDEEDLLDHPELAEMLEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|46198991|ref|YP_004658.1| metal-binding protein [Thermus thermophilus HB27] gi|55981014|ref|YP_144311.1| hypothetical protein TTHA1045 [Thermus thermophilus HB8] gi|62901332|sp|Q72JT5|RRMF_THET2 RecName: Full=Probable rRNA maturation factor gi|62901421|sp|Q5SJG3|RRMF_THET8 RecName: Full=Probable rRNA maturation factor gi|46196615|gb|AAS81031.1| hypothetical conserved metal-binding protein [Thermus thermophilus HB27] gi|55772427|dbj|BAD70868.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 139 Score = 92.0 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 4/125 (3%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 +A++ L+ + + ++++ T R+ L E+ G D+ T+VLSFP Sbjct: 18 LRRALAALMEELGVGDKG---VTVILTGDRRLRALKREWWGEDEATDVLSFPHYEPGDPF 74 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 LGDI ++ + +A G E ++ L HG HLLG+DH ++D ++ Sbjct: 75 VPP-HLGDIWISLDTARRQAEARGASLEEEVLVLAAHGLWHLLGHDHQKEEDWEGFRRVQ 133 Query: 156 RSILE 160 IL Sbjct: 134 ERILA 138 >gi|319946538|ref|ZP_08020773.1| metalloprotease [Streptococcus australis ATCC 700641] gi|319747284|gb|EFV99542.1| metalloprotease [Streptococcus australis ATCC 700641] Length = 165 Score = 92.0 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E DEI +T + FA + + E+++ F + R L Sbjct: 1 MYIEMVDETGQVSDEILKQTQEILEFAA---------QKIGKEDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPEMEISFDEEDLEENPELAEMMAEFDTYIGELFISIDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFGLQEEILTAYGL 162 >gi|262282706|ref|ZP_06060474.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|262261997|gb|EEY80695.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 165 Score = 92.0 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I E +EI +T + FA + E+++ F + R L Sbjct: 1 MYIEIVDETGQVSEEIIKQTQDILEFAA---------QKTGKEKKEMAVTFVTNERSYEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPELDIAIDEEDLLNHPELAEMLDDFDAYIGELFISVDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|296188183|ref|ZP_06856575.1| metalloprotein, YbeY/ UPF0054family [Clostridium carboxidivorans P7] gi|296047309|gb|EFG86751.1| metalloprotein, YbeY/ UPF0054family [Clostridium carboxidivorans P7] Length = 166 Score = 92.0 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 21/165 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N ++I + E + + + E+S++F D+ +I+ +N E Sbjct: 2 IFIDNR--QNKIEISDEIEKNIVSIIEYALQEEKV--NIPCEVSVIFVDNEKIKEINKEN 57 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLML-----------------GDIVLAYEIIEIEANV 117 R IDK T+VLSFP GDIVL+ E + ++ Sbjct: 58 RNIDKVTDVLSFPMLDYEKGKVFKDTYKDFNFSHVDLDEGSLVLGDIVLSLEKAKEQSLE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 F +V+L IH LHLLGYDH+++ + +M E ILE Sbjct: 118 FNHSFIREVVYLTIHSVLHLLGYDHMEEDEKSIMRKREEQILEKF 162 >gi|289806764|ref|ZP_06537393.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 98 Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 40/91 (43%), Positives = 56/91 (61%), Gaps = 2/91 (2%) Query: 81 TNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 TNVLSFP + G +LGD+++ +++E EA K E H H+++HG LHLLGY Sbjct: 6 TNVLSFPFE--APPGIEMPLLGDLIICRQVVEQEAQEQSKPLEAHWAHMVVHGSLHLLGY 63 Query: 141 DHVDDKDACVMEGLERSILEDLGINDPYEVD 171 DH+DD +A ME LE I+ +G DPY + Sbjct: 64 DHIDDDEAEEMESLETEIMLAMGYEDPYIAE 94 >gi|320527302|ref|ZP_08028487.1| conserved hypothetical protein TIGR00043 [Solobacterium moorei F0204] gi|320132326|gb|EFW24871.1| conserved hypothetical protein TIGR00043 [Solobacterium moorei F0204] Length = 152 Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 4/133 (3%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF- 90 E F + +E+S+ F S I +N +YRGID+PT+V+SF Sbjct: 16 YEEFFQSIAKRT--EKELKLAKDLEISITFVRSRTIHIINRDYRGIDRPTDVISFAIRDG 73 Query: 91 -ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 + LGD+ + + +A G + + L HG LH LGYDH++ D Sbjct: 74 LEAFIPDEEKDLGDLFINIDYARKQAREYGHSEKREMGFLFTHGLLHCLGYDHMNPDDEK 133 Query: 150 VMEGLERSILEDL 162 M L+ IL+ + Sbjct: 134 KMFALQDRILDPI 146 >gi|160947548|ref|ZP_02094715.1| hypothetical protein PEPMIC_01483 [Parvimonas micra ATCC 33270] gi|158446682|gb|EDP23677.1| hypothetical protein PEPMIC_01483 [Parvimonas micra ATCC 33270] Length = 156 Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 3/134 (2%) Query: 32 CEVVFAKAVSNLISKGYFVKEN---IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 K + I V+ +E+S+ F + I+ +N +R IDK T+VLSFP Sbjct: 14 ISDTLKKKIIKCIETALKVENKRMSNIEVSVSFVTNEEIKNINSRFRNIDKETDVLSFPM 73 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 F S+ +LGDI+++ E +A G + +++L+ H HLLGYDH+++ D Sbjct: 74 DFEFSEEGMPFILGDIIISTEKSIEQAQEFGHSIDREILYLVCHSVFHLLGYDHIEESDR 133 Query: 149 CVMEGLERSILEDL 162 +M E+ ++ + Sbjct: 134 IIMRNKEKETMKLM 147 >gi|303239955|ref|ZP_07326477.1| protein of unknown function UPF0054 [Acetivibrio cellulolyticus CD2] gi|302592434|gb|EFL62160.1| protein of unknown function UPF0054 [Acetivibrio cellulolyticus CD2] Length = 162 Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 15/162 (9%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 + +E+ ++I + + +AV++ + F + E+S++F D I +N E+ Sbjct: 3 VLIED--LQNKIKVSDEMVELVKRAVNSSLEFEKFSIPS--EISVMFVDDEGIREINREH 58 Query: 75 RGIDKPTNVLSFPTAFASSDGCS-----------SLMLGDIVLAYEIIEIEANVLGKEFE 123 R IDKPT+VLSFP + L+LGDIV++ E+ +++A G FE Sbjct: 59 RSIDKPTDVLSFPIVDMYEGVINSDDGDFDLDEDLLLLGDIVISLEMTKLQAQEYGHSFE 118 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L+ HG HLLGYDH + M + +LE L ++ Sbjct: 119 RELAFLLTHGVFHLLGYDHDSPEREEKMISKQYGVLEILNLS 160 >gi|322372541|ref|ZP_08047077.1| putative metalloprotease Str0617 [Streptococcus sp. C150] gi|321277583|gb|EFX54652.1| putative metalloprotease Str0617 [Streptococcus sp. C150] Length = 165 Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E +EI +TL + FA + + E+++ F + R L Sbjct: 1 MYVEMIDETGQVSEEIKKQTLELLDFAA---------QKLGKEDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPEVDITFDEEDLAENPELAEMMGEFDSYIGELFISVDKAHE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G +E + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSYEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|324993801|gb|EGC25720.1| metalloprotease [Streptococcus sanguinis SK405] gi|324994880|gb|EGC26793.1| metalloprotease [Streptococcus sanguinis SK678] gi|327463075|gb|EGF09396.1| metalloprotease [Streptococcus sanguinis SK1] gi|327490234|gb|EGF22022.1| metalloprotease [Streptococcus sanguinis SK1058] Length = 165 Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 17/152 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + E + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEEILKQTQEILEFAAQKTGKEKKEMAVTFVSNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSL-----------------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +G++ ++ + +A G FE + L +H Sbjct: 71 PELDVSVDEEDLLDHPELAEMLEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|148380900|ref|YP_001255441.1| putative metalloprotease [Clostridium botulinum A str. ATCC 3502] gi|153933017|ref|YP_001385208.1| putative metalloprotease [Clostridium botulinum A str. ATCC 19397] gi|153936466|ref|YP_001388677.1| putative metalloprotease [Clostridium botulinum A str. Hall] gi|166228924|sp|A7FXK4|RRMF_CLOB1 RecName: Full=Probable rRNA maturation factor gi|166228931|sp|A5I629|RRMF_CLOBH RecName: Full=Probable rRNA maturation factor gi|148290384|emb|CAL84511.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152929061|gb|ABS34561.1| metal-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152932380|gb|ABS37879.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum A str. Hall] Length = 166 Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 21/167 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N ++I + E + + + + E+S+VF D++ I+ +N +Y Sbjct: 2 IYIDNR--QNKIKVNEELENKIKEIIDYALKEEKV--NIDYEISVVFIDNNSIKEINKDY 57 Query: 75 RGIDKPTNVLSFPT-----------------AFASSDGCSSLMLGDIVLAYEIIEIEANV 117 R IDK T+VLSFP S +L+LGDI L+ E E ++ Sbjct: 58 RNIDKATDVLSFPMLDYEDGEVFKDIYLNYEFDESDLDEGNLVLGDIALSLEKAEEQSKE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G F +L IH LHLLGYDH+++ + +M E IL+ + Sbjct: 118 FGHSFLRETCYLTIHSVLHLLGYDHMEEDEKVIMRQREEEILKSFNL 164 >gi|327538122|gb|EGF24808.1| protein belonging to uncharacterized protein family UPF0054 [Rhodopirellula baltica WH47] Length = 193 Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 62/159 (38%), Gaps = 7/159 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L + ++ D E + I+ + + + + D I + Sbjct: 8 LTADVLIDEEAEPDLSIWFGCLETARTELAQAAIAAASVEECDRGSVGVRICDDATIHPI 67 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN--HLVH 128 N E+ D PT+V+SFP ++ G++V ++E A+ L+ Sbjct: 68 NREFLQHDYPTDVISFPYELEPP-----MVEGELVASFETAIENASEPSNPLSPREELLL 122 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 ++HG LH++G+D + M E + ++ +GI P Sbjct: 123 YVVHGTLHIVGHDDQSPEPRAAMRRAEIAAMKLIGIELP 161 >gi|295094824|emb|CBK83915.1| conserved hypothetical protein TIGR00043 [Coprococcus sp. ART55/1] Length = 170 Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 23/175 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I E +I +A S + E++++ TD+ I + Sbjct: 1 MSVNIENEYGDI--DIKNYEDVITSIVQA-----SLEFVGCPYPCEVNVLLTDNDSIHEI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGC----------------SSLMLGDIVLAYEIIEIE 114 N + R ID+ T+VLSFP + G L+LGDIV++ + + + Sbjct: 54 NNQQRNIDRATDVLSFPLIDYTIPGNFDGLEDSRCDYFDLTTDELLLGDIVISIDKVYEQ 113 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 A L L+ H LHL GYDH++D + VME ++ IL G YE Sbjct: 114 ATEYNHSKTRELAFLVAHSMLHLSGYDHMEDDERRVMEEMQEKILTMKGYTRDYE 168 >gi|291563244|emb|CBL42060.1| conserved hypothetical protein TIGR00043 [butyrate-producing bacterium SS3/4] Length = 165 Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 18/156 (11%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E L E + + + Y E++++ TD+ I +N + RGID PT+VL Sbjct: 10 EEKLDLPYEEIIKNVIEESLD--YVECPYDAEVNVLLTDNAGIHQINLDMRGIDNPTDVL 67 Query: 85 SFPT----------------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 SFP L++GDIV++ + ++ +A G L Sbjct: 68 SFPMCDFETPGDFSHLEETPEEYFDPDTGELLMGDIVISVDKVKEQAEKYGHSQTRELAF 127 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L+ H LHL GYDH++D + ME ++R ILE G Sbjct: 128 LVAHSMLHLSGYDHMEDDERIQMEDMQREILERRGY 163 >gi|166366707|ref|YP_001658980.1| putative metalloprotease [Microcystis aeruginosa NIES-843] gi|166089080|dbj|BAG03788.1| putative metalloprotease [Microcystis aeruginosa NIES-843] Length = 170 Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 6/112 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD------GCSSLMLGDIVLAY 108 ELSL TD I+T N +YR D+PT+VL+F T L LGDI+++ Sbjct: 51 YELSLRLTDDREIQTYNCQYRHKDQPTDVLAFATLEVDFPVDERILETEPLYLGDIIISV 110 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E + +A L L H LHLLG+DH D+ M L+ ++L+ Sbjct: 111 ETAQQQALTQNHSLARELAWLTAHACLHLLGWDHPDETSLLEMLSLQETLLK 162 >gi|323351168|ref|ZP_08086824.1| metalloprotease [Streptococcus sanguinis VMC66] gi|322122392|gb|EFX94103.1| metalloprotease [Streptococcus sanguinis VMC66] gi|327470589|gb|EGF16045.1| metalloprotease [Streptococcus sanguinis SK330] Length = 165 Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 17/152 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + E + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEEILKQTQEILEFAAQKTGKENKEMAVTFVSNARSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSL-----------------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAVDEEDLLDHPELVEMLEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTSEEEAEMFGLQEEILTAYGL 162 >gi|322387706|ref|ZP_08061315.1| metalloprotease [Streptococcus infantis ATCC 700779] gi|321141573|gb|EFX37069.1| metalloprotease [Streptococcus infantis ATCC 700779] Length = 165 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E EI +T + FA + + E+++ F + R L Sbjct: 1 MYIEMVDETGQVSKEILKQTQEILEFAAK---------KIGKEDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N E+R D+PT+V+S +G++ ++ + Sbjct: 52 NLEFRATDRPTDVISLEYKPELEITFDEEDLAEDPDLAEMMSEFDSYIGELFISIDKAHE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|300173400|ref|YP_003772566.1| putative metalloprotease [Leuconostoc gasicomitatum LMG 18811] gi|299887779|emb|CBL91747.1| Putative metalloprotease [Leuconostoc gasicomitatum LMG 18811] Length = 160 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 11/125 (8%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS----------DGCSSLML 101 + E+S+ F +S I+ N EYRG+DKPT+V+SF + Sbjct: 35 PDNTEMSVTFVNSDEIQRYNREYRGVDKPTDVISFALEEGDDTFDLSPEGDWADDIPKNI 94 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILE 160 GDI+++ +II +A+ LG +E L L++HGFLHL GYDH+ D + M L+R IL+ Sbjct: 95 GDILVSVDIIASQADYLGHSYERELGFLVVHGFLHLNGYDHMLGDAEEKEMFDLQRKILD 154 Query: 161 DLGIN 165 D G+ Sbjct: 155 DYGLK 159 >gi|301321025|gb|ADK69668.1| metalloprotein, YbeY family [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 151 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 2/116 (1%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDI 104 YF +ELS+ F + + + +N +YR +V SFP ++ LGD+ Sbjct: 17 NYFNFNYDIELSITFVNDLKAQQINQQYRNHSYIADVTSFPVEMTENEIKAIGFRELGDM 76 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + + +A + + + L +HGFLHLLGYDH D D +M L+ IL+ Sbjct: 77 FINLNEAKRKAIKYNHDLNSEMGFLFVHGFLHLLGYDHEDSNDEKIMFDLQDQILK 132 >gi|163814101|ref|ZP_02205493.1| hypothetical protein COPEUT_00254 [Coprococcus eutactus ATCC 27759] gi|158450550|gb|EDP27545.1| hypothetical protein COPEUT_00254 [Coprococcus eutactus ATCC 27759] Length = 170 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 21/171 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 + +EN EI +A + + Y E++++ TD+ I +N + Sbjct: 3 VNIENEYGDIEIKNYETVINEIIQASLDFLKCPYV-----CEVNVLLTDNDSIHEINNQQ 57 Query: 75 RGIDKPTNVLSFPTAFASSDGC----------------SSLMLGDIVLAYEIIEIEANVL 118 R ID+ T+VLSFP + G L+LGDIV++ + + +A Sbjct: 58 RNIDRATDVLSFPLIDYTIPGNFDGLEDSRCDNFDLTTGELLLGDIVISIDKVYEQAAEY 117 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 L L+ H LHL GYDH+++ + VME ++ IL G YE Sbjct: 118 NHSKTRELAFLVAHSMLHLSGYDHMEEDERKVMEDMQEKILTTKGYTRDYE 168 >gi|332358727|gb|EGJ36550.1| metalloprotease [Streptococcus sanguinis SK355] Length = 165 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 17/152 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + E + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEEILKQTQEILEFAAQKTGKEKKEMAVTFVSNDRSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSL-----------------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAVDEEDLLDHPELAEMLEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|228478259|ref|ZP_04062867.1| conserved hypothetical protein [Streptococcus salivarius SK126] gi|228249938|gb|EEK09208.1| conserved hypothetical protein [Streptococcus salivarius SK126] Length = 165 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 68/171 (39%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E +++ + + L + + E+++ F + R L Sbjct: 1 MYIEMIDETGQVSEKLK---------EQTLELLDFAAQRLGKEDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPELDISFDEEELAENPELAEMMGEFDSYIGELFISVDKAHE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEDYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|226950374|ref|YP_002805465.1| hypothetical protein TIGR00043 [Clostridium botulinum A2 str. Kyoto] gi|254801658|sp|C1FVS9|RRMF_CLOBJ RecName: Full=Probable rRNA maturation factor gi|226841958|gb|ACO84624.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum A2 str. Kyoto] gi|322807265|emb|CBZ04839.1| metal-dependent hydrolase [Clostridium botulinum H04402 065] Length = 166 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 21/167 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N ++I + E + + + + E+S+VF D++ I+ +N +Y Sbjct: 2 IYIDNR--QNKIKVNEELENKIKEIIDYALKEEKV--NIDYEISVVFIDNNSIKEINKDY 57 Query: 75 RGIDKPTNVLSFPT-----------------AFASSDGCSSLMLGDIVLAYEIIEIEANV 117 R IDK T+VLSFP S +L+LGDI L+ E E ++ Sbjct: 58 RNIDKATDVLSFPMLDYEEGEVFKDIYLNYEFDESDLDEGNLVLGDIALSLEKAEEQSKE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G F +L IH LHLLGYDH+++ + +M E IL+ + Sbjct: 118 FGHSFLRETCYLTIHSVLHLLGYDHMEEDEKVIMRQREEEILKSFNL 164 >gi|224054065|ref|XP_002192222.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 164 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 9/137 (6%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---- 88 +AV L + + + ++ LV + ++ LN YR +PT+VLSFP Sbjct: 16 RAPLRRAVCALRAA---LGASRFDVGLVCASNALMQRLNGAYRHCPEPTDVLSFPFHQVA 72 Query: 89 --AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 LGDI L E I + G+ F++ L HG HLLGY H Sbjct: 73 AGELPRPCCRGEYNLGDIFLGVEYIHQQCRETGENFDDVLTVTAAHGLCHLLGYRHDTKP 132 Query: 147 DACVMEGLERSILEDLG 163 + M E ILE+L Sbjct: 133 EWEQMYQKEAQILEELN 149 >gi|332561271|ref|ZP_08415589.1| hypothetical protein RSWS8N_19539 [Rhodobacter sphaeroides WS8N] gi|332275069|gb|EGJ20385.1| hypothetical protein RSWS8N_19539 [Rhodobacter sphaeroides WS8N] Length = 160 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 19/165 (11%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 +E+ W +E+ L L ++ L L ++ D RI LN +R Sbjct: 2 IEDGRW-EELDLPALATRAAEATLAALDMPAEGF-----TLVVMGCDDARIAELNGAFRQ 55 Query: 77 IDKPTNVLSFPTAFASSDGCS-------------SLMLGDIVLAYEIIEIEANVLGKEFE 123 KPTNVLS+P+ +S+ LGD+ +A+E + EA GK Sbjct: 56 KGKPTNVLSWPSEERASEEPGVAPEPPEPGDPDDPEPLGDVAIAFETCQREAAEQGKPVT 115 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +H+ HL++HG LHLLGYDHV++ D +ME E IL LG+ DPY Sbjct: 116 DHVTHLLVHGVLHLLGYDHVEEADGDLMEATETRILAGLGVPDPY 160 >gi|328953968|ref|YP_004371302.1| metalloprotease ybeY [Desulfobacca acetoxidans DSM 11109] gi|328454292|gb|AEB10121.1| metalloprotease ybeY [Desulfobacca acetoxidans DSM 11109] Length = 128 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 1/111 (0%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 ELSL F + + LN TNV++ P +LGD++++ E + Sbjct: 4 PKAELSLTFVNDPAMARLNRTIMQRRGTTNVIALPQQGGPFPEVQPQILGDVIISLETTQ 63 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV-MEGLERSILEDL 162 +A G EF +IHG LHLLGYDH + A M + + L Sbjct: 64 RQAWQQGWEFAELFDLYLIHGILHLLGYDHETSEAAAQCMAVKTKELFLRL 114 >gi|324991447|gb|EGC23380.1| metalloprotease [Streptococcus sanguinis SK353] Length = 165 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 17/152 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + E + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEEILKQTQEILEFAAQKTGKENKEMAVTFVSNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSL-----------------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAVDEEDLLDHPELAEMLEDFDAYIGELFISVDKAREQAEEFGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|251781164|ref|ZP_04824084.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085479|gb|EES51369.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 166 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 21/167 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I V+N E+ K + + + E+SL+F D+ I +N E Sbjct: 2 IYVDNRQEKMEVSDE--FTNHLEKVIEFALKEEDV--NIPSEISLLFVDNEEIREINNET 57 Query: 75 RGIDKPTNVLSFPTAFASSDGC-----------------SSLMLGDIVLAYEIIEIEANV 117 R ID+ T+VLSFP L+LGDIVL+ E ++ Sbjct: 58 RNIDRATDVLSFPMLDYPDKKVFKEVYTENDFSEADFDGDDLVLGDIVLSLERALEQSKE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +E +L++H LHLLGYDH++++D M E IL L I Sbjct: 118 YNHSYEREASYLVVHSVLHLLGYDHMEEEDKVKMRKREEEILTALDI 164 >gi|221369606|ref|YP_002520702.1| metalloprotease RHOS4_36330 [Rhodobacter sphaeroides KD131] gi|221162658|gb|ACM03629.1| metalloprotease RHOS4_36330 [Rhodobacter sphaeroides KD131] Length = 160 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 82/165 (49%), Gaps = 19/165 (11%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 +E+ W +E+ L L ++ L + L ++ D RI LN +R Sbjct: 2 IEDGRW-EELDLPALATRAAEATLAAL-----DIPAEGFTLVVMGCDDARIAELNGAFRQ 55 Query: 77 IDKPTNVLSFPTAFASSDGCS-------------SLMLGDIVLAYEIIEIEANVLGKEFE 123 KPTNVLS+P+ +S+ LGD+ +A+E + EA GK Sbjct: 56 KGKPTNVLSWPSEERASEEPGVAPEPPEPGDPEDPEPLGDVAIAFETCQREAAEQGKPVA 115 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +H+ HL++HG LHLLGYDHV++ D +ME E IL LG+ DPY Sbjct: 116 DHVTHLLVHGVLHLLGYDHVEEADGDLMEATETRILAGLGVPDPY 160 >gi|168179379|ref|ZP_02614043.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum NCTC 2916] gi|182669701|gb|EDT81677.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum NCTC 2916] Length = 166 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 21/167 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N ++I + E + + + + E+S+VF D++ I+ +N +Y Sbjct: 2 IYIDNR--QNKIKVNEELENKIKEIIDYALKEEKV--NIDYEISVVFIDNNSIKEINKDY 57 Query: 75 RGIDKPTNVLSFPT-----------------AFASSDGCSSLMLGDIVLAYEIIEIEANV 117 R IDK T+VLSFP S +L+LGDI L+ E E ++ Sbjct: 58 RNIDKATDVLSFPMLDYEKGEVFKDIYLNYEFDESDLDEGNLVLGDIALSLEKAEEQSKE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G F +L IH LHLLGYDH+++ + +M E IL+ + Sbjct: 118 FGHSFLRETCYLTIHSVLHLLGYDHMEEDEKVIMRQREEEILKSFNL 164 >gi|153938871|ref|YP_001392225.1| putative metalloprotease [Clostridium botulinum F str. Langeland] gi|170757065|ref|YP_001782581.1| putative metalloprotease [Clostridium botulinum B1 str. Okra] gi|166228940|sp|A7GHG5|RRMF_CLOBL RecName: Full=Probable rRNA maturation factor gi|229553944|sp|B1ILL2|RRMF_CLOBK RecName: Full=Probable rRNA maturation factor gi|152934767|gb|ABS40265.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum F str. Langeland] gi|169122277|gb|ACA46113.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum B1 str. Okra] gi|295320223|gb|ADG00601.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum F str. 230613] Length = 166 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 21/167 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++N ++I + E + + + + E+S+VF D++ I+ +N +Y Sbjct: 2 IYIDNR--QNKIKVNEELENKIKEIIDYALKEEKV--NIDYEISVVFIDNNSIKEINKDY 57 Query: 75 RGIDKPTNVLSFPT-----------------AFASSDGCSSLMLGDIVLAYEIIEIEANV 117 R IDK T+VLSFP S +L+LGDI L+ E E ++ Sbjct: 58 RNIDKATDVLSFPMLDYEEGKVFKDIYLNYEFDESDLDEGNLVLGDIALSLEKAEEQSKE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G F +L IH LHLLGYDH+++ + +M E IL+ + Sbjct: 118 FGHSFLRETCYLTIHSVLHLLGYDHMEEDEKVIMRQREEEILKSFNL 164 >gi|206900820|ref|YP_002251042.1| hypothetical protein DICTH_1213 [Dictyoglomus thermophilum H-6-12] gi|206739923|gb|ACI18981.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12] Length = 142 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 71/150 (47%), Gaps = 11/150 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + N + + + R V ++ K + ++S+VF ++ +I L Sbjct: 1 MSVNVFDLNGYFEKKENER------IKNFVKEVLKKKGLLPNK-YDISVVFVNNEKIREL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YR D PT+VLSF ++G+I ++ + +++ K + + L Sbjct: 54 NSKYRKKDVPTDVLSFSLGKDP----KGRIIGEIYISIDTARVQSEENNKNLIDEVAFLT 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILE 160 +HG LH+LGYDH ++D ME ++++ Sbjct: 110 LHGLLHILGYDHEKEEDYREMEKETKNLIS 139 >gi|33864330|ref|NP_895890.1| hypothetical protein PMT2065 [Prochlorococcus marinus str. MIT 9313] gi|46577390|sp|Q7V498|RRMF_PROMM RecName: Full=Probable rRNA maturation factor gi|33641110|emb|CAE22239.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 187 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 2/120 (1%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLM 100 L ++ L L TD I LN +R + T+VLSFP S + + Sbjct: 60 LTCPEIVRLSPMLSLGLQLTDDATITELNHSWRQRSESTDVLSFPALDNSLVLPTDTCVE 119 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LGDIV++ + + +A E L L+ HG LHLLG+DH D+ M + +L Sbjct: 120 LGDIVVSVQTAQRQAKQHSHELGLELRWLVSHGLLHLLGWDHPTDQSLKTMLSYQEQLLS 179 >gi|227890900|ref|ZP_04008705.1| metal-dependent hydrolase [Lactobacillus salivarius ATCC 11741] gi|227867309|gb|EEJ74730.1| metal-dependent hydrolase [Lactobacillus salivarius ATCC 11741] Length = 159 Score = 91.6 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 19/166 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL+I + E L + V S Y E+S+ ++ +I + Sbjct: 1 MDLEIFDDTNSVPAE--KIQLVKDVLE------FSGKYLELPEDTEMSVTLMNNEQIHEI 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG-----------CSSLMLGDIVLAYEIIEIEANVLG 119 N +YRG+DK T+V+SF D +GD++++ + ++ +A L Sbjct: 53 NLKYRGVDKATDVISFAIEEDDPDELPIILPDDVDFEEPKNIGDMMISMDKVKEQAEYLD 112 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + L L +HGFLHL GYDH+ +D VM L+R IL+ G+ Sbjct: 113 HSEDRELGFLTVHGFLHLNGYDHMKAEDEKVMFKLQRDILDAYGLK 158 >gi|253701857|ref|YP_003023046.1| hypothetical protein GM21_3262 [Geobacter sp. M21] gi|251776707|gb|ACT19288.1| protein of unknown function UPF0054 [Geobacter sp. M21] Length = 132 Score = 91.6 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 2/112 (1%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 ELS+ I +N +Y G DK TNV+SF + +LGD+V++ + Sbjct: 15 PEAELSISIVGDRAIRIINRDYLGRDKATNVISFAMQEGEFGAINPEVLGDVVISVDTAA 74 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVD--DKDACVMEGLERSILEDL 162 EA G+ F + L++HG LH+ GYDH + +A ME ER I L Sbjct: 75 REAEEAGEAFLSRFYFLLMHGILHITGYDHERSGEAEAARMEAKEREIFALL 126 >gi|91202468|emb|CAJ72107.1| hypothetical protein kustd1362 [Candidatus Kuenenia stuttgartiensis] Length = 144 Score = 91.6 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 5/141 (3%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E+ R + K + LI + + LS+V TD+ I LN + G D T+VL Sbjct: 4 EVVNRQKSYAIDEKRIVKLIKRVLKSENKDASLSIVVTDNKEIRRLNKAFLGHDYATDVL 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SF D + + G+I+++ E+ A + E + +IHG LHL+GY+ Sbjct: 64 SFIY-----DASENHVAGEIIVSAEMAYKVAKEHCHDAEGEIALYLIHGLLHLIGYNDKK 118 Query: 145 DKDACVMEGLERSILEDLGIN 165 DA VM E+ +L LG N Sbjct: 119 KGDAKVMHRREKELLSKLGYN 139 >gi|329118104|ref|ZP_08246816.1| metal-dependent hydrolase [Neisseria bacilliformis ATCC BAA-1200] gi|327465764|gb|EGF12037.1| metal-dependent hydrolase [Neisseria bacilliformis ATCC BAA-1200] Length = 165 Score = 91.6 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 81/167 (48%), Gaps = 12/167 (7%) Query: 4 KKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTD 63 +K+ RLDL +++ + E F + + + Y E+SL+ D Sbjct: 10 QKILRQRLDLHFDNQSSA-------QAPAENQFRLWIWQAVKRHY----RRAEISLILLD 58 Query: 64 SHRIETLNFEYRGIDKPTNVLSFPTAF-ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 N +YRG D TNVLSF + S + GD+V+ +I+ EA GK Sbjct: 59 EPAARACNRDYRGKDYATNVLSFALDEGETCAPLSDGLHGDLVICPQIVLKEAAEQGKTP 118 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 E H HL IHG LHL+GYDH++D +A ME LE +L L DPY+ Sbjct: 119 EQHYAHLTIHGTLHLMGYDHIEDTEAEEMETLETELLNQLAYPDPYK 165 >gi|146296844|ref|YP_001180615.1| hypothetical protein Csac_1839 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166980486|sp|A4XKI9|RRMF_CALS8 RecName: Full=Probable rRNA maturation factor gi|145410420|gb|ABP67424.1| protein of unknown function UPF0054 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 158 Score = 91.6 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 14/162 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I + + + + + E + F+ + E+S++ D+ I+ L Sbjct: 1 MKIIIQNQQDKYQIDESISKIIEDSVLNTLK------IFMDDENYEISVMIVDNQFIKEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG--------CSSLMLGDIVLAYEIIEIEANVLGKEF 122 N YR IDK T+VLSFP + + LGDIV++ E +A G Sbjct: 55 NKHYRSIDKETDVLSFPIFEFKNGELQEDIAIVEEEIPLGDIVISIEKAYEQAKEFGHSV 114 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 E + +L +H LHLLG+DH++++D +M E +LE +G+ Sbjct: 115 EREIAYLTVHSVLHLLGFDHIEEEDRMLMRKYEEMVLEGMGL 156 >gi|466970|gb|AAA17156.1| B1937_F1_21 [Mycobacterium leprae] Length = 140 Score = 91.6 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 6/108 (5%) Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEI 113 V D+ + L+ + + PT+V+SFP G MLGDIVL E Sbjct: 2 VLLDTAAMADLHMRWMDLPGPTDVMSFPMDEFEPGGRPDAAEPGPSMLGDIVLCPEFAAQ 61 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 +A G + L L IHG LHLLGYDH + + M L+ +LE+ Sbjct: 62 QAAAEGHSLGHELALLTIHGVLHLLGYDHGEPDEEKEMFALQGRLLEE 109 >gi|317497353|ref|ZP_07955676.1| hypothetical protein HMPREF0996_00656 [Lachnospiraceae bacterium 5_1_63FAA] gi|316895422|gb|EFV17581.1| hypothetical protein HMPREF0996_00656 [Lachnospiraceae bacterium 5_1_63FAA] Length = 170 Score = 91.6 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 71/166 (42%), Gaps = 22/166 (13%) Query: 15 IAVENALWGD-EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 I +EN G+ I + V A+ Y E++L+ TD+ I +N E Sbjct: 3 IIIENEYEGEINIPYEKIAHEVIEAAID------YVDCPYECEVNLMLTDNETIHAINKE 56 Query: 74 YRGIDKPTNVLSFPTAFASSD---------------GCSSLMLGDIVLAYEIIEIEANVL 118 R ID+PT+VLSFP A +LGDIV++ + + +A Sbjct: 57 QREIDRPTDVLSFPMAEYEEPADFSKIEEDPMAFDPESGEFLLGDIVISMDKVWEQAENY 116 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G E LI H LHL GYDH+++++ ME + IL Sbjct: 117 GHSREREYAFLIAHSMLHLFGYDHMEEEERKDMEKRQEEILTKTKY 162 >gi|32473188|ref|NP_866182.1| hypothetical protein RB4579 [Rhodopirellula baltica SH 1] gi|46577385|sp|Q7USC9|RRMF_RHOBA RecName: Full=Probable rRNA maturation factor gi|32397867|emb|CAD73868.1| conserved hypothetical protein [Rhodopirellula baltica SH 1] Length = 194 Score = 91.6 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 7/159 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L + ++ D E + I+ + + + D I + Sbjct: 9 LTADVLIDEEAEPDLSIWFGCLETARTELAQAAIAAAAVEGCDRGSVGVRICDDATIHPI 68 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN--HLVH 128 N E+ D PT+V+SFP ++ G++V ++E A+ L+ Sbjct: 69 NREFLQHDYPTDVISFPYELEPP-----MVEGELVASFETAIENASEPSNPLSPREELLL 123 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 ++HG LH++G+D + M E + ++ +GI P Sbjct: 124 YVVHGTLHIVGHDDQSPEPRAAMRRAEIAAMKLIGIELP 162 >gi|188588423|ref|YP_001920266.1| putative metalloprotease [Clostridium botulinum E3 str. Alaska E43] gi|238689660|sp|B2V2J8|RRMF_CLOBA RecName: Full=Probable rRNA maturation factor gi|188498704|gb|ACD51840.1| conserved hypothetical protein [Clostridium botulinum E3 str. Alaska E43] Length = 166 Score = 91.2 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 21/167 (12%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I V+N E+ K + + + E+SL+F D+ I +N E Sbjct: 2 IYVDNRQEKMEVSDE--FTNHLEKVIEFALKEEDV--NIPSEISLLFVDNEEIREINNET 57 Query: 75 RGIDKPTNVLSFPTAFASSDGC-----------------SSLMLGDIVLAYEIIEIEANV 117 R ID+ T+VLSFP L+LGDIVL+ E ++ Sbjct: 58 RNIDRATDVLSFPMLDYPEKKVFKEVYTENDFSEADFDGDDLVLGDIVLSLERALEQSKE 117 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +E +L++H LHLLGYDH+++ D M E IL L I Sbjct: 118 YNHSYEREASYLVVHSVLHLLGYDHMEEDDKVKMRKREEEILTALDI 164 >gi|308273339|emb|CBX29942.1| Putative metalloprotease GSU2284 [uncultured Desulfobacterium sp.] Length = 173 Score = 91.2 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 9/149 (6%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 + + N+ +++ +R + A+A+ N + ELS++ D I LN +Y Sbjct: 25 VLINNS--QNKLRIRKIQVRKAAQAILNALDC------PKGELSILIEDDDGITGLNEKY 76 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 P NV+SFP + +LGD+V++ E + E N LG F+ L+IHG Sbjct: 77 LQRKGPANVISFPLRDVNFPEIEHDLLGDVVISAETTQREGNSLGTGFDKRFAELLIHGI 136 Query: 135 LHLLGYDHVD-DKDACVMEGLERSILEDL 162 LHL GYDH +++A ME +L+ + Sbjct: 137 LHLFGYDHEKSEQEADEMEIKASKLLKII 165 >gi|270291319|ref|ZP_06197541.1| metalloprotease [Pediococcus acidilactici 7_4] gi|270280165|gb|EFA26001.1| metalloprotease [Pediococcus acidilactici 7_4] Length = 156 Score = 91.2 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 8/130 (6%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------ 97 + Y + E+S+ + I+ +N EYR +D+PT+V+SF D Sbjct: 26 FAGNYLKLDVATEISVTLMHNDEIQKINREYRNVDRPTDVISFAINDEDEDIIMDPEMAE 85 Query: 98 --SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 +GD++++ + + +A LG +E L L +HGFLHL GYDH+ +D M L+ Sbjct: 86 EIPDNIGDLMISVDKVAEQAEFLGHSYERELGFLCVHGFLHLNGYDHMKKEDQEKMFPLQ 145 Query: 156 RSILEDLGIN 165 + I+ G+ Sbjct: 146 KEIMSAYGLE 155 >gi|330994668|ref|ZP_08318591.1| Putative metalloprotease [Gluconacetobacter sp. SXCC-1] gi|329758309|gb|EGG74830.1| Putative metalloprotease [Gluconacetobacter sp. SXCC-1] Length = 170 Score = 91.2 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 9/156 (5%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 I V + W + + +AV ++ +++V D + +N+ Sbjct: 12 DITVADRRWNRAVRQP---RHLVTRAVDAALAATGRYGP----VTVVLADDRTVRHMNWR 64 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 +RG ++PTNVL+F +A+ L GDI++A+E + EA G+ HL HL++HG Sbjct: 65 HRGRNRPTNVLTF--EYAAPHAPGGLWGGDIIIAFETLAREARAAGRSMAAHLAHLVVHG 122 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 LHL YDH +A ME E IL LG +P++ Sbjct: 123 VLHLAQYDHHHPGEAREMEMEEARILSTLGFANPWK 158 >gi|116491017|ref|YP_810561.1| metal-dependent hydrolase [Oenococcus oeni PSU-1] gi|290890498|ref|ZP_06553573.1| hypothetical protein AWRIB429_0963 [Oenococcus oeni AWRIB429] gi|122276801|sp|Q04F76|RRMF_OENOB RecName: Full=Probable rRNA maturation factor gi|116091742|gb|ABJ56896.1| Predicted metal-dependent hydrolase [Oenococcus oeni PSU-1] gi|290479894|gb|EFD88543.1| hypothetical protein AWRIB429_0963 [Oenococcus oeni AWRIB429] Length = 153 Score = 91.2 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 10/158 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LD+ I +++ E+ + K ++ + + E+S+ F + +I Sbjct: 1 MLDV-IVLDDK--QKELDNDDA--KLVKKVLAFAFD--FMQLKQNYEMSVNFVNDEKIHQ 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSL--MLGDIVLAYEIIEIEANVLGKEFENHLV 127 +N EYR D+ T+V+SF + + LGD+ ++ + +A + L Sbjct: 54 INKEYRNTDRATDVISFALEESDRIHIDGVAEELGDLFISLDHAHAQAEEYLHSYNRELA 113 Query: 128 HLIIHGFLHLLGYDHVDDKDAC-VMEGLERSILEDLGI 164 +L +HGFLHLLGYDH + A M GL+ ILE G+ Sbjct: 114 YLAVHGFLHLLGYDHTRSQAAEDEMFGLQDKILEGYGL 151 >gi|304316656|ref|YP_003851801.1| hypothetical protein Tthe_1198 [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778158|gb|ADL68717.1| protein of unknown function UPF0054 [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 162 Score = 91.2 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 65/167 (38%), Gaps = 20/167 (11%) Query: 13 LQIAVENALWG-DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 + I ++N D L + E V A+ F D+ I LN Sbjct: 1 MNILIDNRQDKVDVDGLDKIVEDVVKTALEVEGVVDDVEVSVS------FVDNEEIHKLN 54 Query: 72 FEYRGIDKPTNVLSFPT-------------AFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 YR +D+ T+VLSFP + D +GDIV++ E + +A Sbjct: 55 KYYRNVDRETDVLSFPLVEFEEIYSDIDEENYDEDDAAGPEPIGDIVISLEKAKQQAEEY 114 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G F + +L H HL+GYDH D + +M E ++ L I Sbjct: 115 GHSFIREVAYLTAHSMFHLMGYDHETDDERKIMREKEDEVMRRLKIE 161 >gi|225715688|gb|ACO13690.1| metalloprotease C21orf57 [Esox lucius] Length = 168 Score = 91.2 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 7/118 (5%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA-------SSDGCSSLMLGDIV 105 +L ++ D+ +I+ +N YR + PT+VLSFP LGDI Sbjct: 33 QKFDLGVICVDNRKIQRINNIYRKNNSPTDVLSFPFYEELRPGKLPCPLHRDEQNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 L E + + ++ L + HG HLLGY H +++ M E IL + Sbjct: 93 LGVEYLMKQCQQESQDLHETLTSVTAHGICHLLGYRHETEEEWKEMLQKESYILNEFN 150 >gi|168023436|ref|XP_001764244.1| predicted protein [Physcomitrella patens subsp. patens] gi|162684684|gb|EDQ71085.1| predicted protein [Physcomitrella patens subsp. patens] Length = 268 Score = 91.2 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 7/156 (4%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKE----NIVELSLVFTDSHRIETL 70 + V++ L + L + E + A + ++ + VELS++ RI L Sbjct: 115 VIVDDDLDEADSSLLAVVEQLKLDAPLAVKLAIEGFEDFDQSDTVELSVLLCSDSRIREL 174 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+R D PT+VLSF + G +LGD+V++ E +A G + L L Sbjct: 175 NKEWRRKDSPTDVLSF--SQDQPAGSPLTLLGDLVISVETAARQAEERGHTLIDELRILF 232 Query: 131 IHGFLHLLGYDHVDDKDACV-MEGLERSILEDLGIN 165 +HG LH+L YDH +A ME E IL LG Sbjct: 233 VHGLLHVLDYDHELGPEASKEMEEEENRILSALGWK 268 >gi|299144158|ref|ZP_07037238.1| putative metalloprotease [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518643|gb|EFI42382.1| putative metalloprotease [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 148 Score = 91.2 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 6/152 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I +N +EI + + K++ +I + + +S+ F D I+ LN Sbjct: 1 MNILFDNR--QNEIEIDENIIELIKKSILEVIKSEKL--DENIMVSVSFVDDEEIQELNK 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +RG+D T+VLSFP +LGD+V+ + + +A E + +L +H Sbjct: 57 NFRGVDSSTDVLSFPIDDEFQI--EERILGDVVINTKRVIEQAQEFRHSNEREMSYLTVH 114 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LHLLGYDH++++D +M E+ I+++L I Sbjct: 115 SVLHLLGYDHIEEEDRLIMRSKEKIIMDNLKI 146 >gi|148377382|ref|YP_001256258.1| hypothetical protein MAG_1150 [Mycoplasma agalactiae PG2] gi|148291428|emb|CAL58813.1| Conserved hypothetical protein [Mycoplasma agalactiae PG2] Length = 152 Score = 90.9 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 9/156 (5%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + I +EN + + E + + + + +++ + + + ++ +I+ Sbjct: 1 MVIVNINIENG---SSFNFKAEYEQILSN-----LQTYFKLEDKEISVDVSIVNNRKIKK 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASS-DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYR D T++LSF S L LG++V+++E +E +A G + Sbjct: 53 LNKEYRQKDYATDILSFDFGDKSLYKSMPFLPLGELVISHEKVEEQAKEFGHSLRREYCY 112 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L HG +HL+GYDH + + M + +I L I Sbjct: 113 LYAHGLIHLMGYDHEVENERIEMNKIVDAIFNPLNI 148 >gi|308189661|ref|YP_003922592.1| transcriptional regulator [Mycoplasma fermentans JER] gi|319776821|ref|YP_004136472.1| putative metalloprotease [Mycoplasma fermentans M64] gi|307624403|gb|ADN68708.1| putative transcriptional regulator [Mycoplasma fermentans JER] gi|318037896|gb|ADV34095.1| Putative metalloprotease [Mycoplasma fermentans M64] Length = 151 Score = 90.9 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 10/157 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++L + + + L E + + + NL + F V + + T++ I+ Sbjct: 1 MVELNVVN-------KTKNKFLFEKEYKQILENLAKE--FGLNQTVSVDVTITNNDEIQK 51 Query: 70 LNFEYRGIDKPTNVLSFPTAFASS-DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYR D PT++LSF + LG++V+++E +E +A G + Sbjct: 52 LNKEYRNKDYPTDILSFGLEDWELFENMPIYPLGELVISHEKVEAQAQEFGHSIRREYCY 111 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L HG +HL+GYDH + + M L I E L I+ Sbjct: 112 LFAHGLIHLMGYDHETEVERAEMNKLVDLIFEPLKIS 148 >gi|156391269|ref|XP_001635691.1| predicted protein [Nematostella vectensis] gi|156222787|gb|EDO43628.1| predicted protein [Nematostella vectensis] Length = 169 Score = 90.9 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 7/122 (5%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA-------SSDGCSSLML 101 +K + ++S+V RI++LN +YR + T+VL+FP + L Sbjct: 29 LLKADRFDVSIVCAGGKRIKSLNLKYRRRNVQTDVLAFPYFENMKPGVLPNPKLQDDWNL 88 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 GD++L +I + K + +L LI HG HLLGY H +++ M E+ +L Sbjct: 89 GDVILGMPVIHQDCQEDNKSVQEYLPVLITHGLCHLLGYTHDTEQNLQQMHKKEKEVLSG 148 Query: 162 LG 163 Sbjct: 149 FN 150 >gi|306829341|ref|ZP_07462531.1| probable metalloprotease [Streptococcus mitis ATCC 6249] gi|304428427|gb|EFM31517.1| probable metalloprotease [Streptococcus mitis ATCC 6249] Length = 165 Score = 90.9 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 17/152 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + + + + L + + E+++ F + R LN EYRG D+PT+V+S Sbjct: 11 QVSQEILQQTQEILEFAAQKIGKEDKEMAVTFVTNERSHELNLEYRGTDRPTDVISLEYK 70 Query: 90 FASSDGCSSL-----------------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +G++ ++ + +A G FE + L +H Sbjct: 71 PELDISFDEEDLLENPELAEMMSEFDAYIGELFISIDKAHEQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|145572760|sp|Q2JU40|RRMF_SYNJA RecName: Full=Probable rRNA maturation factor Length = 163 Score = 90.9 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 8/144 (5%) Query: 25 EIHLRTLCEVV-FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 E+++ + E + + + + + ELSL T I LN E+R ID PT+V Sbjct: 10 ELNVPSPVEEATWHRWFEVWLRELGV--TDPCELSLCLTSDEHIRQLNREFRHIDAPTDV 67 Query: 84 LSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 L+F +LGDIV++ +A G+ L L HG LHLL Sbjct: 68 LAFAAEETSTPVELQKITGVRLLGDIVISVPTACAQAKAQGQRLSRELAWLASHGLLHLL 127 Query: 139 GYDHVDDKDACVMEGLERSILEDL 162 G+DH D+ M + +L + Sbjct: 128 GWDHPDELSLQRMLQQQHHLLAAI 151 >gi|126736950|ref|ZP_01752685.1| hypothetical protein RSK20926_10984 [Roseobacter sp. SK209-2-6] gi|126721535|gb|EBA18238.1| hypothetical protein RSK20926_10984 [Roseobacter sp. SK209-2-6] Length = 169 Score = 90.9 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 61/171 (35%), Positives = 89/171 (52%), Gaps = 18/171 (10%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L+I++E+ W ++ L A A+ + + ++ E++L+ +I LN Sbjct: 2 LEISIEDPRW-EQADLHAHAAEAIAAALMH-----FDLEPEDCEVALLACGDEKIAELNS 55 Query: 73 EYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 E+RG TNVLS+P D + LGDI +A++ EA K Sbjct: 56 EFRGKPVATNVLSWPAEDLAAEEPGGQPLQPEPDFTGEIPLGDIAIAFDTCLREAKAAQK 115 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HL HL++HG LHLLGYDH+ D DA VME LE IL +GI+DPYE+D Sbjct: 116 PLADHLRHLLVHGVLHLLGYDHIRDPDATVMEALEVEILGKMGIDDPYEID 166 >gi|145219509|ref|YP_001130218.1| hypothetical protein Cvib_0701 [Prosthecochloris vibrioformis DSM 265] gi|189040581|sp|A4SE07|RRMF_PROVI RecName: Full=Probable rRNA maturation factor gi|145205673|gb|ABP36716.1| protein of unknown function UPF0054 [Chlorobium phaeovibrioides DSM 265] Length = 148 Score = 90.9 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 9/135 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 R L E KAV ++S+ V + ++ + +N E+ G D T+ ++FP Sbjct: 11 RALPEAKLKKAVRLVLSEEGG---KAVSIDAIYCGGRMMRRINREFLGHDYDTDTVTFPY 67 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + ++ G+ ++ + + A FE L+ + IH LHLLGYD ++ Sbjct: 68 SE------GLVVEGEFYVSLDEVGRNAVRFKSGFEQELLRVTIHSVLHLLGYDDASPEER 121 Query: 149 CVMEGLERSILEDLG 163 M E L LG Sbjct: 122 GRMRQKEDRYLRILG 136 >gi|167767292|ref|ZP_02439345.1| hypothetical protein CLOSS21_01811 [Clostridium sp. SS2/1] gi|167711267|gb|EDS21846.1| hypothetical protein CLOSS21_01811 [Clostridium sp. SS2/1] gi|291559398|emb|CBL38198.1| conserved hypothetical protein TIGR00043 [butyrate-producing bacterium SSC/2] Length = 170 Score = 90.9 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 71/166 (42%), Gaps = 22/166 (13%) Query: 15 IAVENALWGD-EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 I +EN G+ I + V A+ Y E++L+ T++ I +N E Sbjct: 3 IIIENEYEGEINIPYEKIAHEVIEAAID------YVDCPYECEVNLMLTNNETIHAINKE 56 Query: 74 YRGIDKPTNVLSFPTAFASSD---------------GCSSLMLGDIVLAYEIIEIEANVL 118 R ID+PT+VLSFP A +LGDIV++ + + +A Sbjct: 57 QREIDRPTDVLSFPMAEYEEPADFSKIEEDPMAFDPESGEFLLGDIVISMDKVWEQAENY 116 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G E LI H LHL GYDH+++++ ME + IL Sbjct: 117 GHSREREYAFLIAHSMLHLFGYDHMEEEERKDMEKRQEEILTKTKY 162 >gi|260886787|ref|ZP_05898050.1| putative metalloprotease [Selenomonas sputigena ATCC 35185] gi|330839401|ref|YP_004413981.1| protein of unknown function UPF0054 [Selenomonas sputigena ATCC 35185] gi|260863386|gb|EEX77886.1| putative metalloprotease [Selenomonas sputigena ATCC 35185] gi|329747165|gb|AEC00522.1| protein of unknown function UPF0054 [Selenomonas sputigena ATCC 35185] Length = 179 Score = 90.9 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 44/121 (36%), Positives = 59/121 (48%), Gaps = 7/121 (5%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + L E +AV + G E+S+ TD I LN EYR ID+PT+V+S Sbjct: 12 LPLDEGLEAEIRRAVEKV---GEIYDVADAEVSITLTDDAHIHVLNREYRRIDRPTDVIS 68 Query: 86 FPTAFASSD----GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 F + G + +LGDIVL+ E +A G +V L +HG LHLLGYD Sbjct: 69 FALNESEEPAIAGGPAVNVLGDIVLSVERAAAQAADYGHSLRREIVFLTVHGMLHLLGYD 128 Query: 142 H 142 H Sbjct: 129 H 129 >gi|254442036|ref|ZP_05055512.1| conserved hypothetical protein TIGR00043, putative [Verrucomicrobiae bacterium DG1235] gi|198256344|gb|EDY80652.1| conserved hypothetical protein TIGR00043, putative [Verrucomicrobiae bacterium DG1235] Length = 158 Score = 90.9 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 39 AVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS 98 + + + ELS+ F D I L+ ++ PT+V++FP Sbjct: 29 KLIQTLDRAGAFDAPAGELSIAFVDKDYIAQLHDQFMDDPTPTDVITFPGDPDFD----- 83 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 G+I++ ++ + A F + L +IHG+LHL G+D + D D M E+ Sbjct: 84 -QAGEIIVCPQVAQEYAQKANLSFSDELGLYLIHGYLHLCGFDDIADSDRAQMRLAEQQA 142 Query: 159 LE 160 LE Sbjct: 143 LE 144 >gi|332358998|gb|EGJ36819.1| metalloprotease [Streptococcus sanguinis SK49] Length = 165 Score = 90.9 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 17/152 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + E + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEEILKQTQEILEFAAQKTGKEKKEMAVTFVSNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSL-----------------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAVDEEDLLDHPELAEMLEDFDAYIGELFISVDKAHEQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|330718563|ref|ZP_08313163.1| metal-dependent hydrolase [Leuconostoc fallax KCTC 3537] Length = 160 Score = 90.5 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 11/129 (8%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL-------- 99 Y E+S+ F ++ I N +YRG+DKPT+V+SF D Sbjct: 31 YLKLPEDTEMSVTFMNNDAIHEYNKQYRGVDKPTDVISFAIEEDGDDLPVLPDEEMAETL 90 Query: 100 --MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLER 156 +GDI+++ +I++ +A+ LG FE L L++HGFLHL GYDH+D+ M L+R Sbjct: 91 AKNIGDILVSIDIVDTQADYLGHSFERELGFLVVHGFLHLNGYDHMDEGPQEKEMFELQR 150 Query: 157 SILEDLGIN 165 IL+D G+ Sbjct: 151 KILDDYGLE 159 >gi|221633270|ref|YP_002522495.1| hypothetical protein trd_1289 [Thermomicrobium roseum DSM 5159] gi|221155563|gb|ACM04690.1| putative conserved hypothetical protein TIGR00043 [Thermomicrobium roseum DSM 5159] Length = 165 Score = 90.5 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 8/125 (6%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 + ++ + + E+ + I L+ ++GI PT+V+SFP Sbjct: 22 RRLARFLRFVAEREGVTGEVGVWICRDDEIAELHERFQGIPGPTDVMSFP--------GE 73 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 LGDI ++ E ++ +G + L +HGFLHL+GYD + + + M + Sbjct: 74 PPYLGDIAVSAETAAVQGAEVGHGVGREIAFLTVHGFLHLIGYDDLSEPERSRMLERQEE 133 Query: 158 ILEDL 162 +L Sbjct: 134 LLHAF 138 >gi|303232221|ref|ZP_07318920.1| translation metalloprotein YbeY [Atopobium vaginae PB189-T1-4] gi|302481631|gb|EFL44692.1| translation metalloprotein YbeY [Atopobium vaginae PB189-T1-4] Length = 208 Score = 90.5 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 3/113 (2%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---CSSLMLGDIVLAYEI 110 +S+ I +N E+RG DKPT+V+S LGDI+LA E Sbjct: 78 PCTISISIVTIDHIHDINREFRGQDKPTDVISIECERPDDPSLAAGEPCELGDIILASEY 137 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 I +A+ G + ++ L+IH LHLLGYDH++D DA VME LE +L ++G Sbjct: 138 IAHQADDFGMDHQDECRLLLIHAMLHLLGYDHLNDADAEVMEALEDRLLIEVG 190 >gi|309775531|ref|ZP_07670531.1| metalloprotease [Erysipelotrichaceae bacterium 3_1_53] gi|308916625|gb|EFP62365.1| metalloprotease [Erysipelotrichaceae bacterium 3_1_53] Length = 155 Score = 90.5 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 16/158 (10%) Query: 11 LDLQIAVEN--ALWGD-EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 +++ + ++ W + T+ E E S++F I Sbjct: 1 MEISVFNQSSEKRWSRYKKDFVTISEKA----------NEVLKLEQEHSASVIFVTKDAI 50 Query: 68 ETLNFEYRGIDKPTNVLSF---PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 +N EYR ID+PT+V+SF + + LGDI + E + +A G Sbjct: 51 HEINREYRKIDRPTDVISFALKDSEDSYEVMEGGEELGDIFINTEAVVSQAADYGHTLRR 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L HG LHLLGYDH+ ++ VM L+ IL+D+ Sbjct: 111 EVCFLFTHGLLHLLGYDHMTPEEEAVMFQLQDVILDDI 148 >gi|227432227|ref|ZP_03914223.1| metal-dependent hydrolase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352000|gb|EEJ42230.1| metal-dependent hydrolase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 160 Score = 90.5 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 11/130 (8%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------- 99 Y + E+S+ F ++ I N +YRGIDKPT+V+SF D Sbjct: 30 KYLELPDNTEMSVTFMNNEEIHQYNKKYRGIDKPTDVISFAIEEDGDDLPVLPDEFMDAV 89 Query: 100 ---MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLE 155 +GDI+++ +II +A LG +E L L++HGFLHL GYDH+ D + M L+ Sbjct: 90 LAKNIGDILVSVDIINSQAEYLGHSYERELGFLVVHGFLHLNGYDHMLGDAEEKEMFDLQ 149 Query: 156 RSILEDLGIN 165 R IL++ G+ Sbjct: 150 REILDNYGLK 159 >gi|22537644|ref|NP_688495.1| metalloprotease [Streptococcus agalactiae 2603V/R] gi|76788021|ref|YP_330133.1| metalloprotease [Streptococcus agalactiae A909] gi|22534530|gb|AAN00368.1|AE014260_24 conserved hypothetical protein TIGR00043 [Streptococcus agalactiae 2603V/R] gi|76563078|gb|ABA45662.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae A909] Length = 161 Score = 90.5 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + E + + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 7 QVSEDIKKQTLDLLEFAAQKTGKENKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 66 Query: 90 FASSDGCSSL-----------------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +G++ ++ + + +A G +E + L +H Sbjct: 67 PEVDISFDEEDLAENPELAEMLEDFDSYIGELFISIDKAKEQAEEYGHSYEREMGFLAVH 126 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M L+ IL G+ Sbjct: 127 GFLHINGYDHYTPEEEKEMFSLQEEILTAYGLK 159 >gi|170017068|ref|YP_001727987.1| metal-dependent hydrolase [Leuconostoc citreum KM20] gi|238688965|sp|B1MYE1|RRMF_LEUCK RecName: Full=Probable rRNA maturation factor gi|169803925|gb|ACA82543.1| Predicted metal-dependent hydrolase [Leuconostoc citreum KM20] Length = 160 Score = 90.5 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 11/133 (8%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD--------- 94 + E+S+ F ++ I+ N +YRG+DKPT+V+SF D Sbjct: 27 FAGEALKLPVNTEMSVTFVNNDEIQRYNRDYRGVDKPTDVISFAIEEGEDDFNIISDDAW 86 Query: 95 -GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVME 152 + +GDI+++ +II +A LG +E L L++HGFLHL GYDH+ D + M Sbjct: 87 TEDIAKNIGDIIVSVDIIGAQAEYLGHSYERELGFLVVHGFLHLNGYDHMLGDAEEKEMF 146 Query: 153 GLERSILEDLGIN 165 L+R IL++ G+ Sbjct: 147 DLQREILDNYGLK 159 >gi|72383386|ref|YP_292741.1| hypothetical protein PMN2A_1550 [Prochlorococcus marinus str. NATL2A] gi|123620478|sp|Q46HJ0|RRMF_PROMT RecName: Full=Probable rRNA maturation factor gi|72003236|gb|AAZ59038.1| Protein of unknown function UPF0054 [Prochlorococcus marinus str. NATL2A] Length = 184 Score = 90.5 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 7/160 (4%) Query: 12 DLQIAVENALWGDEIHLRTLCEVV-----FAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 DL + V + + E + F + S L + + L L T+ + Sbjct: 24 DLDVFVNSDTLELMKNPSKWIEEIGSWIRFIQVNSALKCPEIVLNSSQFSLGLELTNDKK 83 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDG--CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 I LN + G K T+VLSFP + G + LGDIV++ +A + Sbjct: 84 ILDLNHAWLGQSKATDVLSFPIIDETFFGVSNECIELGDIVISVPTAIRQAKDNNADLFR 143 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L HG LHLLG+DH D++ M ++ +LE GI Sbjct: 144 ELRWLATHGLLHLLGWDHSDEESLHKMLLIQEQLLEIRGI 183 >gi|124024971|ref|YP_001014087.1| metal-dependent hydrolase [Prochlorococcus marinus str. NATL1A] gi|123960039|gb|ABM74822.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus str. NATL1A] Length = 184 Score = 90.5 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 7/160 (4%) Query: 12 DLQIAVENALWGDEIHLRTLCEVV-----FAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 DL + V + + E + F + S L + + L L T+ + Sbjct: 24 DLDVFVNSDTLELMKNPSKWIEEIGSWIRFIQVNSALKCPEIVLNSSQFSLGLELTNDKK 83 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDG--CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 I LN + G K T+VLSFP + G + LGDIV++ +A + Sbjct: 84 ILDLNHAWLGQSKTTDVLSFPIIDETFFGVSNECIELGDIVISVPTAIRQAKDNNADLFR 143 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L HG LHLLG+DH D++ M ++ +L+ GI Sbjct: 144 ELRWLATHGLLHLLGWDHSDEESLNKMLLIQEQLLDIRGI 183 >gi|169351077|ref|ZP_02868015.1| hypothetical protein CLOSPI_01856 [Clostridium spiroforme DSM 1552] gi|169292139|gb|EDS74272.1| hypothetical protein CLOSPI_01856 [Clostridium spiroforme DSM 1552] Length = 152 Score = 90.5 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 8/157 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + A+ N + + + +A L + +ELS + D +I + Sbjct: 1 MKIDFALINEVNDFKEDYYQDYLNIINEASKQL------EISDDLELSCILVDDQKIHEI 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL--MLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N EYR ID+ T+V+SF + + +GDI ++ + ++AN G + + Sbjct: 55 NKEYRNIDRATDVISFALEDSEQYYVEGMARNIGDIFISVDHALMQANEYGHSLKREMCF 114 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L HG LHLLG+DH++ +D M +++ IL L I Sbjct: 115 LFTHGLLHLLGFDHMEKEDEEKMIAMQKKILNALKIE 151 >gi|195978546|ref|YP_002123790.1| putative metalloprotease [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|226701650|sp|B4U460|RRMF_STREM RecName: Full=Probable rRNA maturation factor gi|195975251|gb|ACG62777.1| putative metal-dependent hydrolase [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 165 Score = 90.5 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E E+ + + L + + E+++ F + R L Sbjct: 1 MYIEMIDETKQVSQEM---------MEQTIDLLNFAAKTIGKEDKEMAVTFVTNDRSHAL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-----------------GCSSLMLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPELPIAFSQEDLELDPDLAGMLQEFDAYIGELFISVDKAHE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 112 QAEAYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEILTAYGL 162 >gi|270292909|ref|ZP_06199120.1| putative metalloprotease [Streptococcus sp. M143] gi|270278888|gb|EFA24734.1| putative metalloprotease [Streptococcus sp. M143] Length = 165 Score = 90.5 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 17/152 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSQEILQQTQEILEFAAQKIGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSL-----------------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAFDEEDLLENPELAEMMSEFDAYIGELFISIDKAYEQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|160915030|ref|ZP_02077243.1| hypothetical protein EUBDOL_01038 [Eubacterium dolichum DSM 3991] gi|158432829|gb|EDP11118.1| hypothetical protein EUBDOL_01038 [Eubacterium dolichum DSM 3991] Length = 155 Score = 90.5 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 10/152 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ I + A + + A+ L+ S++F +I + Sbjct: 1 MEINIINQTA--EKRWNRYKKDFLTIAQKTEELLKLKQRYCA-----SVIFVTPQKIHEI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGC---SSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 N EYR ID+PT+V+SF + + S+ LGDI + E I +A+ G + Sbjct: 54 NREYRHIDRPTDVISFALLDEADEYEIMEDSIELGDIFINIEAIVKQASEYGHSMRREVC 113 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L HG LHLLGYDH++ ++ VM L+ IL Sbjct: 114 FLFTHGLLHLLGYDHMEQEEERVMFALQDDIL 145 >gi|85057391|ref|YP_456307.1| metal-dependent hydrolase [Aster yellows witches'-broom phytoplasma AYWB] gi|123518441|sp|Q2NK15|RRMF_AYWBP RecName: Full=Probable rRNA maturation factor gi|84789496|gb|ABC65228.1| predicted metal-dependent hydrolase [Aster yellows witches'-broom phytoplasma AYWB] Length = 146 Score = 90.5 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 65/128 (50%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 K +L+ K + + + L+F + +I+ LN YR + PT+VLSF G Sbjct: 14 KPFKSLLIKMFLPIKEKKIMHLIFVTNEKIQELNSFYRQKNYPTDVLSFHNDLTFFAGLE 73 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 LGD+ +++ + +A E + L +HGFLHL GY H +++ +M L+ Sbjct: 74 DNSLGDVFISFPKAQEQAKTFKHSLEREIAFLAVHGFLHLKGYQHRTEEEFQIMLALQEK 133 Query: 158 ILEDLGIN 165 IL+ +G+N Sbjct: 134 ILQKVGLN 141 >gi|257784596|ref|YP_003179813.1| hypothetical protein Apar_0793 [Atopobium parvulum DSM 20469] gi|257473103|gb|ACV51222.1| protein of unknown function UPF0054 [Atopobium parvulum DSM 20469] Length = 169 Score = 90.5 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 3/114 (2%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG---DIVLAY 108 + +S+ I+ +N E+R + PT+V+S + + DI+LA Sbjct: 36 KRPCAVSISIVSDEEIQQVNLEWREKNAPTDVISLEVERPDDPDLAPGEMCELGDIILAP 95 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + I +A G + +++H LHLLGYDHV D +A VME E +++ L Sbjct: 96 QFIARQAKEYGTTEADEFRLMLVHAMLHLLGYDHVADDEAEVMEAREDALVALL 149 >gi|322374472|ref|ZP_08048986.1| putative metalloprotease [Streptococcus sp. C300] gi|321279972|gb|EFX57011.1| putative metalloprotease [Streptococcus sp. C300] Length = 165 Score = 90.5 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 17/152 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSQEILQQTQEILEFAAQKIGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSL-----------------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAFDEEDLLENPELAEMMSEFDAYIGELFISIDKAHEQAKEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEETEMFGLQEEILTAYGL 162 >gi|306825400|ref|ZP_07458740.1| probable metalloprotease [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432338|gb|EFM35314.1| probable metalloprotease [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 165 Score = 90.5 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 17/152 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSQEILQQTQEILEFAAQKIGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSL-----------------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAFDEEDLLENPEFAEMMSEFDAYIGELFISIDKAHEQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|77405165|ref|ZP_00782263.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae H36B] gi|77411675|ref|ZP_00788014.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae CJB111] gi|77162247|gb|EAO73219.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae CJB111] gi|77176167|gb|EAO78938.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae H36B] gi|319745495|gb|EFV97799.1| metalloprotease [Streptococcus agalactiae ATCC 13813] Length = 165 Score = 90.5 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 70/172 (40%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E ++I +TL + FA + E+++ F + R L Sbjct: 1 MYVEMIDETGQVSEDIKKQTLDLLEFAA---------QKTGKENKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + + Sbjct: 52 NLEYRDTDRPTDVISLEYKPEVDISFDEEDLTENPELAEMLEDFDSYIGELFISIDKAKE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G +E + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 112 QAEEYGHSYEREMGFLAVHGFLHINGYDHYTPEEEKEMFSLQEEILTAYGLK 163 >gi|306819834|ref|ZP_07453488.1| possible metal-dependent hydrolase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552081|gb|EFM40018.1| possible metal-dependent hydrolase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 158 Score = 90.1 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I + + ++ + ++ K +S + +N E+SL FTD+ I +N EY Sbjct: 2 INIVTSNEQEKYEIGEELMLMIEKVISECEDEEGLNFDN--EISLTFTDNENIRQINKEY 59 Query: 75 RGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 R ID T+VLSFP S + LGDIV++ E + +A G FE + Sbjct: 60 RDIDDKTDVLSFPMYEIEDLEEEKKSKSKNLKPLGDIVISMEQADEQAKQFGHSFEREVC 119 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +LI H HL+GYDH+ D + +M E I+ L I Sbjct: 120 YLICHSMFHLMGYDHMTDDEKKIMREKEEKIMTKLNI 156 >gi|309800250|ref|ZP_07694426.1| conserved hypothetical protein [Streptococcus infantis SK1302] gi|308116103|gb|EFO53603.1| conserved hypothetical protein [Streptococcus infantis SK1302] Length = 165 Score = 90.1 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E EI + L + + E+++ F + R L Sbjct: 1 MYIEMVDETGQVSKEI---------LEQTQEILEFAAKKIGKEDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N E+R D+PT+V+S +G++ ++ + Sbjct: 52 NLEFRDTDRPTDVISLEYKPELEIAFDEEDLENDPDLADMMSEFDAYIGELFISIDKAHE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|293365234|ref|ZP_06611951.1| metalloprotease [Streptococcus oralis ATCC 35037] gi|307703773|ref|ZP_07640714.1| uncharacterized protein family UPF0054 family protein [Streptococcus oralis ATCC 35037] gi|315612996|ref|ZP_07887907.1| metalloprotease [Streptococcus sanguinis ATCC 49296] gi|291316684|gb|EFE57120.1| metalloprotease [Streptococcus oralis ATCC 35037] gi|307622608|gb|EFO01604.1| uncharacterized protein family UPF0054 family protein [Streptococcus oralis ATCC 35037] gi|315315106|gb|EFU63147.1| metalloprotease [Streptococcus sanguinis ATCC 49296] Length = 165 Score = 90.1 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 17/152 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSQEILQQTQEILEFAAQKIGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSL-----------------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAFDEEDLLENPELAEMMSEFDAYIGELFISIDKAHEQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|88608284|ref|YP_506143.1| hypothetical protein NSE_0249 [Neorickettsia sennetsu str. Miyayama] gi|123492190|sp|Q2GEF3|RRMF_NEOSM RecName: Full=Probable rRNA maturation factor gi|88600453|gb|ABD45921.1| conserved hypothetical protein TIGR00043 [Neorickettsia sennetsu str. Miyayama] Length = 143 Score = 90.1 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 77/139 (55%), Gaps = 12/139 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L+I + + W ++ + + KA+ + + E S+V TD I TLN Sbjct: 2 LEIRITDPRWTKKLKN---LDALLQKALECCL------EGKKAEFSVVLTDDEFIRTLNK 52 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 YRG D PTNVLSF +++ ++G+++L+++ + IEA +FE+HL+H+ IH Sbjct: 53 SYRGRDTPTNVLSFNY---TNEQIGIGIIGEVILSFDRLVIEALENEIKFEDHLLHMFIH 109 Query: 133 GFLHLLGYDHVDDKDACVM 151 G LH+LGYDH D++ M Sbjct: 110 GVLHVLGYDHSSDRETLAM 128 >gi|25011603|ref|NP_735998.1| metalloprotease [Streptococcus agalactiae NEM316] gi|77408558|ref|ZP_00785294.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae COH1] gi|77413993|ref|ZP_00790166.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae 515] gi|54040165|sp|P67139|RRMF_STRA5 RecName: Full=Probable rRNA maturation factor gi|54042634|sp|P67138|RRMF_STRA3 RecName: Full=Probable rRNA maturation factor gi|145572758|sp|Q3K020|RRMF_STRA1 RecName: Full=Probable rRNA maturation factor gi|24413143|emb|CAD47221.1| Unknown [Streptococcus agalactiae NEM316] gi|77159973|gb|EAO71111.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae 515] gi|77172832|gb|EAO75965.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae COH1] Length = 165 Score = 90.1 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 70/172 (40%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E ++I +TL + FA + E+++ F + R L Sbjct: 1 MYVEMIDETGQVSEDIKKQTLDLLEFAA---------QKTGKENKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + + Sbjct: 52 NLEYRDTDRPTDVISLEYKPEVDISFDEEDLAENPELAEMLEDFDSYIGELFISIDKAKE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G +E + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 112 QAEEYGHSYEREMGFLAVHGFLHINGYDHYTPEEEKEMFSLQEEILTAYGLK 163 >gi|315223062|ref|ZP_07864941.1| conserved hypothetical protein TIGR00043 [Streptococcus anginosus F0211] gi|319939222|ref|ZP_08013585.1| metal-dependent hydrolase [Streptococcus anginosus 1_2_62CV] gi|315188012|gb|EFU21748.1| conserved hypothetical protein TIGR00043 [Streptococcus anginosus F0211] gi|319811618|gb|EFW07894.1| metal-dependent hydrolase [Streptococcus anginosus 1_2_62CV] Length = 165 Score = 90.1 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E +EI +T + FA + + E+++ F + R L Sbjct: 1 MYIEMVDETGQVSEEIIKQTHDILEFAAK---------KIGKEEKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + Sbjct: 52 NLEYRNTDRPTDVISLEYKPELDIAIDEEDLLENPELAEMLEDFDAYIGELFISIDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|310828432|ref|YP_003960789.1| hypothetical protein ELI_2845 [Eubacterium limosum KIST612] gi|308740166|gb|ADO37826.1| hypothetical protein ELI_2845 [Eubacterium limosum KIST612] Length = 156 Score = 90.1 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 14/158 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDL+I + + D + E + + E+S I+ Sbjct: 3 LELDLEIDNRSGVELDASVYEKVEEYIIITLQQENVLV-------PCEISFSLVIPEEIQ 55 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCS-------SLMLGDIVLAYEIIEIEANVLGKE 121 LN EYR IDK T+VLSFP D +MLGDIV++ +A G Sbjct: 56 ELNAEYRNIDKETDVLSFPMLEFPEDEDMLTYETGIPVMLGDIVISTTRAAEQAEAYGHS 115 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 E + +L +H LHLLGYDH+++ + VM E++I+ Sbjct: 116 LEREICYLSVHSVLHLLGYDHMEEDEKRVMRAREKAIM 153 >gi|322376462|ref|ZP_08050955.1| putative metalloprotease [Streptococcus sp. M334] gi|321282269|gb|EFX59276.1| putative metalloprotease [Streptococcus sp. M334] Length = 165 Score = 90.1 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E E+ + L + + E+++ F + R L Sbjct: 1 MYIEMVDETGQVSKEM---------LQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPELEISFDEEDLLENPELAEMMSEFDAYIGELFISIDKAHE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|257466092|ref|ZP_05630403.1| metal-binding protein [Fusobacterium gonidiaformans ATCC 25563] gi|315917249|ref|ZP_07913489.1| metal-binding protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691124|gb|EFS27959.1| metal-binding protein [Fusobacterium gonidiaformans ATCC 25563] Length = 164 Score = 90.1 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 74/156 (47%), Gaps = 4/156 (2%) Query: 13 LQIAVENALWGDEIHLRTLCEV---VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++++VE ++ + E V + + +++ + +SL+ T + +I+ Sbjct: 5 VEVSVEYKKNDYAEFIQEITENNNEVLTEYIEEVLTMEKIESTLPLYVSLLLTGNEQIQG 64 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-LGDIVLAYEIIEIEANVLGKEFENHLVH 128 +N E+R D PT+V+SF LGDIV++ + + +A F + Sbjct: 65 INREFRKKDSPTDVISFAYHENEDFLVGPYDTLGDIVISLDRVGEQAKEYNHSFTREFYY 124 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ HG LH+LGYDH++++D M E IL G Sbjct: 125 VLTHGILHILGYDHIEEEDKKEMREREEEILGHFGY 160 >gi|291320052|ref|YP_003515310.1| hypothetical protein MAGa1210 [Mycoplasma agalactiae] gi|290752381|emb|CBH40352.1| Conserved hypothetical protein [Mycoplasma agalactiae] Length = 152 Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 9/156 (5%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + I +EN + + E + + + + +++ + + + ++ +I+ Sbjct: 1 MVIVNINIENG---SSFNFKAEYEQILSN-----LQTYFKLEDKEISVDVSIVNNGKIKK 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASS-DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYR D T++LSF S L LG++V+++E +E +A G + Sbjct: 53 LNKEYRQKDYATDILSFDFGDKSLYKSMPFLPLGELVISHEKVEEQAKEFGHSLRREYCY 112 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L HG +HL+GYDH + + M + +I + L I Sbjct: 113 LYAHGLIHLMGYDHEVENERIEMNKIVDAIFDPLNI 148 >gi|33239659|ref|NP_874601.1| metal-dependent hydrolase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|46577394|sp|Q7VE08|RRMF_PROMA RecName: Full=Probable rRNA maturation factor gi|33237184|gb|AAP99253.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 195 Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 8/157 (5%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ +DL ++ W + I + + + + NL K + L+FT+ Sbjct: 31 IDSKMIDL--IMDCDTWRNSI--VSWFDCILMQ--PNLTCPQIVRKNRFFSMGLLFTNDL 84 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 I +N E+R D+ T+VLSFP L LGDI+++ E +A + Sbjct: 85 SIRQMNKEWRKKDESTDVLSFPAIDEHIVLPPNQFLELGDIIVSVETAFKQAKIHNHSLM 144 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + L L+ HGFLHLLG+DH M + +L+ Sbjct: 145 HELRWLVSHGFLHLLGWDHPSSASLNEMLSFQELLLK 181 >gi|88809863|ref|ZP_01125369.1| hypothetical protein WH7805_10818 [Synechococcus sp. WH 7805] gi|88786247|gb|EAR17408.1| hypothetical protein WH7805_10818 [Synechococcus sp. WH 7805] Length = 200 Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 6/141 (4%) Query: 22 WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 W L E + + + V L L T I LN +RG+ + T Sbjct: 41 WQS--DLCRWLEALKQSWEQPTAPQLRDCLD--VSLGLQLTGDREIAELNGRWRGLPQAT 96 Query: 82 NVLSFPT--AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 +VLSF + ++L LGDIV++ +A G E L L+ HG LHLLG Sbjct: 97 DVLSFAALESEMPLQQATTLELGDIVVSVPTAARQAIEQGHSLERELQWLVSHGLLHLLG 156 Query: 140 YDHVDDKDACVMEGLERSILE 160 +DH D+ M + +L Sbjct: 157 WDHPDETTLNAMIACQERLLA 177 >gi|317968159|ref|ZP_07969549.1| metal-dependent hydrolase [Synechococcus sp. CB0205] Length = 187 Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 16/153 (10%) Query: 24 DEIHLRTLCEVVFAKAVSNLISK-GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 D I + +S L + ++ L L + I LN ++R + T+ Sbjct: 30 DPIQGIEPWHALINGWLSQLKGELPEPLQAPAYSLGLSLVNDEEIAALNSDWRDKEGATD 89 Query: 83 VLSFPTAFASSDGCSSLML---------------GDIVLAYEIIEIEANVLGKEFENHLV 127 VL+F D ++ + GDIV++ E +A G L+ Sbjct: 90 VLAFAAQDDGLDDAPAIPMPDFDGEEGLLDALELGDIVISVETAARQAPEHGHNLREELL 149 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 L HG LHLLG+DH DD M ++ +L Sbjct: 150 FLATHGLLHLLGWDHPDDASLEAMLQRQQQLLA 182 >gi|332188741|ref|ZP_08390454.1| uncharacterized UPF0054 family protein [Sphingomonas sp. S17] gi|332011247|gb|EGI53339.1| uncharacterized UPF0054 family protein [Sphingomonas sp. S17] Length = 171 Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 60/168 (35%), Positives = 80/168 (47%), Gaps = 7/168 (4%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +++ + E GDE + A+ +E+S+ T + Sbjct: 1 MIEIALIHEEPWSGDEDSWEAIATRAARAAIERTPHGPLLTTPASIEISVRLTSDDEVHA 60 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDG-------CSSLMLGDIVLAYEIIEIEANVLGKEF 122 LN +YR DKPTNVLSFP ++LGDIVLA+ + EA G Sbjct: 61 LNRQYRQKDKPTNVLSFPMVQPDLIETVTQNSDDGEVLLGDIVLAHGVCIAEAADRGISP 120 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 E H HL++HG LHLLGYDH+ D +A ME +ER L LGI DPY V Sbjct: 121 ETHATHLLVHGVLHLLGYDHMQDDEAEAMEAIERDALASLGIADPYLV 168 >gi|116617889|ref|YP_818260.1| metal-dependent hydrolase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271910|sp|Q03Y35|RRMF_LEUMM RecName: Full=Probable rRNA maturation factor gi|116096736|gb|ABJ61887.1| Predicted metal-dependent hydrolase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 160 Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 11/130 (8%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------- 99 Y + E+S+ F ++ I N +YRGIDKPT+V+SF D Sbjct: 30 KYLELPDNTEMSVTFMNNEEIHQYNKKYRGIDKPTDVISFAIEEDGDDLPVLPDELMDAE 89 Query: 100 ---MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLE 155 +GDI+++ +II +A LG +E L L++HGFLHL GYDH+ D + M L+ Sbjct: 90 LAKNIGDILVSVDIINSQAEYLGHSYERELGFLVVHGFLHLNGYDHMLGDAEEKEMFDLQ 149 Query: 156 RSILEDLGIN 165 R IL++ G+ Sbjct: 150 REILDNYGLK 159 >gi|308233980|ref|ZP_07664717.1| hypothetical protein AvagD15_02962 [Atopobium vaginae DSM 15829] gi|328944011|ref|ZP_08241476.1| hypothetical protein HMPREF0091_10701 [Atopobium vaginae DSM 15829] gi|327491980|gb|EGF23754.1| hypothetical protein HMPREF0091_10701 [Atopobium vaginae DSM 15829] Length = 168 Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 3/115 (2%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAY 108 + +S+ I TLN +R D+PT+V+S LGDIVLA Sbjct: 37 KRPCNVSISIVTDEHIHTLNKTWRNQDRPTDVISLECERPDDPDLANGEVCELGDIVLAP 96 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 I +A+ E+ L+IHG LHLLGYDH+ D +A VME LE +L ++G Sbjct: 97 NYIAHQADSFHMAHEDECRLLLIHGMLHLLGYDHLTDDEAEVMEALEDRLLLEVG 151 >gi|15902913|ref|NP_358463.1| putative metalloprotease [Streptococcus pneumoniae R6] gi|116516344|ref|YP_816337.1| putative metalloprotease [Streptococcus pneumoniae D39] gi|148984709|ref|ZP_01817977.1| hypothetical protein CGSSp3BS71_01657 [Streptococcus pneumoniae SP3-BS71] gi|148988410|ref|ZP_01819857.1| hypothetical protein CGSSp6BS73_06270 [Streptococcus pneumoniae SP6-BS73] gi|149002518|ref|ZP_01827452.1| hypothetical protein CGSSp14BS69_12356 [Streptococcus pneumoniae SP14-BS69] gi|168483036|ref|ZP_02707988.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1873-00] gi|168485919|ref|ZP_02710427.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1087-00] gi|168491056|ref|ZP_02715199.1| conserved hypothetical protein [Streptococcus pneumoniae CDC0288-04] gi|168494396|ref|ZP_02718539.1| conserved hypothetical protein [Streptococcus pneumoniae CDC3059-06] gi|169833180|ref|YP_001694412.1| putative metalloprotease [Streptococcus pneumoniae Hungary19A-6] gi|221231730|ref|YP_002510882.1| hypothetical protein SPN23F_08920 [Streptococcus pneumoniae ATCC 700669] gi|225854471|ref|YP_002735983.1| putative metalloprotease [Streptococcus pneumoniae JJA] gi|225856625|ref|YP_002738136.1| putative metalloprotease [Streptococcus pneumoniae P1031] gi|225858760|ref|YP_002740270.1| putative metalloprotease [Streptococcus pneumoniae 70585] gi|225861146|ref|YP_002742655.1| putative metalloprotease [Streptococcus pneumoniae Taiwan19F-14] gi|237650884|ref|ZP_04525136.1| putative metalloprotease [Streptococcus pneumoniae CCRI 1974] gi|237821334|ref|ZP_04597179.1| putative metalloprotease [Streptococcus pneumoniae CCRI 1974M2] gi|289167811|ref|YP_003446080.1| hypothetical protein smi_0968 [Streptococcus mitis B6] gi|298229557|ref|ZP_06963238.1| putative metalloprotease [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254474|ref|ZP_06978060.1| putative metalloprotease [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503023|ref|YP_003724963.1| metalloprotease [Streptococcus pneumoniae TCH8431/19A] gi|303254434|ref|ZP_07340540.1| putative metalloprotease [Streptococcus pneumoniae BS455] gi|307127482|ref|YP_003879513.1| hypothetical protein SP670_1352 [Streptococcus pneumoniae 670-6B] gi|307704697|ref|ZP_07641596.1| uncharacterized protein family UPF0054 family protein [Streptococcus mitis SK597] gi|307706465|ref|ZP_07643274.1| uncharacterized protein family UPF0054 family protein [Streptococcus mitis SK321] gi|307708602|ref|ZP_07645066.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261] gi|307709147|ref|ZP_07645606.1| uncharacterized protein family UPF0054 family protein [Streptococcus mitis SK564] gi|29428192|sp|Q8DQ35|RRMF_STRR6 RecName: Full=Probable rRNA maturation factor gi|122278777|sp|Q04KW1|RRMF_STRP2 RecName: Full=Probable rRNA maturation factor gi|238688290|sp|B1IBC7|RRMF_STRPI RecName: Full=Probable rRNA maturation factor gi|254799900|sp|C1C6U4|RRMF_STRP7 RecName: Full=Probable rRNA maturation factor gi|254799998|sp|C1CRT3|RRMF_STRZT RecName: Full=Probable rRNA maturation factor gi|254807259|sp|B8ZP64|RRMF_STRPJ RecName: Full=Probable rRNA maturation factor gi|254807268|sp|C1CDW2|RRMF_STRZJ RecName: Full=Probable rRNA maturation factor gi|254807292|sp|C1CK48|RRMF_STRZP RecName: Full=Probable rRNA maturation factor gi|15458473|gb|AAK99673.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116076920|gb|ABJ54640.1| conserved hypothetical protein TIGR00043 [Streptococcus pneumoniae D39] gi|147759455|gb|EDK66447.1| hypothetical protein CGSSp14BS69_12356 [Streptococcus pneumoniae SP14-BS69] gi|147923100|gb|EDK74215.1| hypothetical protein CGSSp3BS71_01657 [Streptococcus pneumoniae SP3-BS71] gi|147926091|gb|EDK77165.1| hypothetical protein CGSSp6BS73_06270 [Streptococcus pneumoniae SP6-BS73] gi|168995682|gb|ACA36294.1| conserved hypothetical protein [Streptococcus pneumoniae Hungary19A-6] gi|172043366|gb|EDT51412.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1873-00] gi|183571014|gb|EDT91542.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1087-00] gi|183574714|gb|EDT95242.1| conserved hypothetical protein [Streptococcus pneumoniae CDC0288-04] gi|183575625|gb|EDT96153.1| conserved hypothetical protein [Streptococcus pneumoniae CDC3059-06] gi|220674190|emb|CAR68718.1| conserved hypothetical protein [Streptococcus pneumoniae ATCC 700669] gi|225721312|gb|ACO17166.1| conserved hypothetical protein [Streptococcus pneumoniae 70585] gi|225722204|gb|ACO18057.1| conserved hypothetical protein [Streptococcus pneumoniae JJA] gi|225724973|gb|ACO20825.1| conserved hypothetical protein [Streptococcus pneumoniae P1031] gi|225727792|gb|ACO23643.1| conserved hypothetical protein [Streptococcus pneumoniae Taiwan19F-14] gi|288907378|emb|CBJ22215.1| conserved hypothetical protein [Streptococcus mitis B6] gi|298238618|gb|ADI69749.1| metalloprotease [Streptococcus pneumoniae TCH8431/19A] gi|301799943|emb|CBW32526.1| conserved hypothetical protein [Streptococcus pneumoniae OXC141] gi|302598601|gb|EFL65641.1| putative metalloprotease [Streptococcus pneumoniae BS455] gi|306484544|gb|ADM91413.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B] gi|307615351|gb|EFN94560.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261] gi|307618175|gb|EFN97333.1| uncharacterized protein family UPF0054 family protein [Streptococcus mitis SK321] gi|307620093|gb|EFN99210.1| uncharacterized protein family UPF0054 family protein [Streptococcus mitis SK564] gi|307621744|gb|EFO00782.1| uncharacterized protein family UPF0054 family protein [Streptococcus mitis SK597] gi|327389245|gb|EGE87590.1| hypothetical protein SPAR5_0931 [Streptococcus pneumoniae GA04375] gi|332076241|gb|EGI86707.1| hypothetical protein SPAR68_0966 [Streptococcus pneumoniae GA41301] gi|332201433|gb|EGJ15503.1| hypothetical protein SPAR93_1028 [Streptococcus pneumoniae GA47368] Length = 165 Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E E+ + L + + E+++ F + R L Sbjct: 1 MYIEMVDETGQVSKEM---------LQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPELEIAFDEEDLLENPELAEMMSEFDAYIGELFISIDKAHE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|147669820|ref|YP_001214638.1| hypothetical protein DehaBAV1_1181 [Dehalococcoides sp. BAV1] gi|189038619|sp|A5FPW5|RRMF_DEHSB RecName: Full=Probable rRNA maturation factor gi|146270768|gb|ABQ17760.1| protein of unknown function UPF0054 [Dehalococcoides sp. BAV1] Length = 160 Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 19/163 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ + V + + L F K +++ K + EL +V T I+ L Sbjct: 1 MEINVIV-------KPPFKKLVSAQFLKKIASETLKAQAADPSS-ELGIVITGQEEIKEL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG-----------CSSLMLGDIVLAYEIIEIEANVLG 119 N +YR +D+PT+VLSF + + + LG+++++Y E++A G Sbjct: 53 NCKYRQLDEPTDVLSFYMLEENPENLTAPDDFPTPPDEATHLGEVIISYPQAELQAGAAG 112 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L L+IHG LHLLGYDH + VM+ + ++ + Sbjct: 113 HSVNHELAFLLIHGVLHLLGYDHHETAAEAVMKSHQDIAMKHI 155 >gi|116749595|ref|YP_846282.1| hypothetical protein Sfum_2165 [Syntrophobacter fumaroxidans MPOB] gi|116698659|gb|ABK17847.1| protein of unknown function UPF0054 [Syntrophobacter fumaroxidans MPOB] Length = 122 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 1/108 (0%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +S++ D + LN YR D T+VLSFP +LGD+V+ + + Sbjct: 1 MSILIVDDEEMAGLNSTYRRKDTSTDVLSFPMREGEFGDVCEEVLGDVVICAPMAKRMGE 60 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLG 163 + G F++ + L++HG LHL+G+DH +A M +L+ LG Sbjct: 61 LHGASFQSVMDLLLVHGILHLVGHDHEQGRGEAARMADKTMELLKMLG 108 >gi|15900844|ref|NP_345448.1| putative metalloprotease [Streptococcus pneumoniae TIGR4] gi|111657971|ref|ZP_01408678.1| hypothetical protein SpneT_02000860 [Streptococcus pneumoniae TIGR4] gi|149010387|ref|ZP_01831758.1| hypothetical protein CGSSp19BS75_03512 [Streptococcus pneumoniae SP19-BS75] gi|182683913|ref|YP_001835660.1| hypothetical protein SPCG_0943 [Streptococcus pneumoniae CGSP14] gi|303259879|ref|ZP_07345854.1| hypothetical protein CGSSp9vBS293_10008 [Streptococcus pneumoniae SP-BS293] gi|303262293|ref|ZP_07348237.1| hypothetical protein CGSSp14BS292_01338 [Streptococcus pneumoniae SP14-BS292] gi|303264715|ref|ZP_07350633.1| hypothetical protein CGSSpBS397_06729 [Streptococcus pneumoniae BS397] gi|303267322|ref|ZP_07353182.1| hypothetical protein CGSSpBS457_11366 [Streptococcus pneumoniae BS457] gi|303269127|ref|ZP_07354906.1| hypothetical protein CGSSpBS458_03184 [Streptococcus pneumoniae BS458] gi|29428248|sp|Q97R63|RRMF_STRPN RecName: Full=Probable rRNA maturation factor gi|238691155|sp|B2IPC1|RRMF_STRPS RecName: Full=Probable rRNA maturation factor gi|14972442|gb|AAK75088.1| conserved hypothetical protein TIGR00043 [Streptococcus pneumoniae TIGR4] gi|147764868|gb|EDK71797.1| hypothetical protein CGSSp19BS75_03512 [Streptococcus pneumoniae SP19-BS75] gi|182629247|gb|ACB90195.1| hypothetical protein SPCG_0943 [Streptococcus pneumoniae CGSP14] gi|301801810|emb|CBW34521.1| conserved hypothetical protein [Streptococcus pneumoniae INV200] gi|302636616|gb|EFL67107.1| hypothetical protein CGSSp14BS292_01338 [Streptococcus pneumoniae SP14-BS292] gi|302639084|gb|EFL69544.1| hypothetical protein CGSSpBS293_10008 [Streptococcus pneumoniae SP-BS293] gi|302641314|gb|EFL71682.1| hypothetical protein CGSSpBS458_03184 [Streptococcus pneumoniae BS458] gi|302643132|gb|EFL73419.1| hypothetical protein CGSSpBS457_11366 [Streptococcus pneumoniae BS457] gi|302645802|gb|EFL76031.1| hypothetical protein CGSSpBS397_06729 [Streptococcus pneumoniae BS397] Length = 165 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E E+ + L + + E+++ F + R L Sbjct: 1 MYIEMVDETGQVSKEM---------LQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + Sbjct: 52 NLEYRNTDRPTDVISLEYKPELEIAFDEEDLLENSELAEMMSEFDAYIGELFISIDKAHE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|332297629|ref|YP_004439551.1| metalloprotease ybeY [Treponema brennaborense DSM 12168] gi|332180732|gb|AEE16420.1| metalloprotease ybeY [Treponema brennaborense DSM 12168] Length = 162 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 44/128 (34%), Positives = 59/128 (46%), Gaps = 2/128 (1%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA-- 91 K + S + E+S++F I LN +YR I PT+VLSF Sbjct: 20 EWIEKIEPFMESVLRKLHITGWEVSVLFCADPFIAELNLQYRSIKGPTDVLSFELGDEYI 79 Query: 92 SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 DG GDIV++ + +E A G + L L+IHG LHL GYDH D+ M Sbjct: 80 DEDGVPWTSAGDIVVSIDTLERNALEFGVPVDQELKRLLIHGVLHLSGYDHSDNSPEQEM 139 Query: 152 EGLERSIL 159 L+ SIL Sbjct: 140 LVLQESIL 147 >gi|238809604|dbj|BAH69394.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 173 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 10/158 (6%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 ++L + + + L E + + + NL + F V + + T++ I+ Sbjct: 22 IMVELNVVN-------KTKNKFLFEKEYKQILENLAKE--FGLNQTVSVDVTITNNDEIQ 72 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASS-DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN EYR D PT++LSF + LG++V+++E +E +A Sbjct: 73 KLNKEYRNKDYPTDILSFGLEDWELFENMPIYPLGELVISHEKVEAQAQEFVHSIRREYC 132 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +L HG +HL+GYDH + + M L I E L I+ Sbjct: 133 YLFAHGLIHLMGYDHETEVERAEMNKLVDLIFEPLKIS 170 >gi|313665395|ref|YP_004047266.1| metalloprotein, YbeY family [Mycoplasma leachii PG50] gi|312950006|gb|ADR24602.1| metalloprotein, YbeY family [Mycoplasma leachii PG50] Length = 164 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 10/153 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L + + + + K + YF +ELS+ F D + + Sbjct: 1 MLKVNYFNDTDV------NMNFWKKFANKILKTAY--EYFNFNYDIELSITFVDDLKAQQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 +N +YR +V SF + LGD+ + + +A + + + Sbjct: 53 INQKYRNHSYIADVTSFSVEMTDQEIKAIGFRELGDMFINLSEAKRKAIKYEHDLNSEMG 112 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 L +HGFLHLLGYDH D D +M L+ IL+ Sbjct: 113 FLFVHGFLHLLGYDHEDLDDEKIMFDLQDQILK 145 >gi|150015729|ref|YP_001307983.1| metalloprotease [Clostridium beijerinckii NCIMB 8052] gi|189040615|sp|A6LRP7|RRMF_CLOB8 RecName: Full=Probable rRNA maturation factor gi|149902194|gb|ABR33027.1| protein of unknown function UPF0054 [Clostridium beijerinckii NCIMB 8052] Length = 167 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 69/162 (42%), Gaps = 22/162 (13%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKEN-----IVELSLVFTDSHRIETLNFEYRGIDK 79 + R K + L F + E+SL+F D++ I+ +N E RGI++ Sbjct: 3 YVDNRQNKVEASEKLIERLTEVIEFALKEEEVNMKCEISLLFVDNNEIKEINNETRGINR 62 Query: 80 PTNVLSFPTAFASSDGCSSLML-----------------GDIVLAYEIIEIEANVLGKEF 122 T+VLSFP M GDIVL+ E ++ + Sbjct: 63 ETDVLSFPMLEYEDKKVFKDMYKDYKFSQSDFDGDELVLGDIVLSLEKALEQSKEFNHSY 122 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 E +L++H LHLLGYDH++D D +M E IL L I Sbjct: 123 EREASYLVVHSVLHLLGYDHMEDDDKIIMRSREEDILNKLNI 164 >gi|223985695|ref|ZP_03635742.1| hypothetical protein HOLDEFILI_03048 [Holdemania filiformis DSM 12042] gi|223962306|gb|EEF66771.1| hypothetical protein HOLDEFILI_03048 [Holdemania filiformis DSM 12042] Length = 162 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 10/164 (6%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 ++ + + V + + A+ L +G +S++F Sbjct: 1 MQNQEVKMMITCTFVNKTREKQWKENYPDFQRIAEHALEVLNKQG------DYTISVIFV 54 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----GCSSLMLGDIVLAYEIIEIEANVL 118 S +I +N +YR +D+PT+V+SF + + + LGDI + E +A Sbjct: 55 KSRKIHEINRDYRQVDRPTDVISFAACDDQDEFELIEEAEVELGDIFINVEAAISQAEEY 114 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 G + + L HG LH GYDH+ + +M L+ IL+ L Sbjct: 115 GHSLQREICFLFTHGLLHCFGYDHMQPDEEKIMFDLQHEILDPL 158 >gi|322391810|ref|ZP_08065275.1| metalloprotease [Streptococcus peroris ATCC 700780] gi|321145290|gb|EFX40686.1| metalloprotease [Streptococcus peroris ATCC 700780] Length = 165 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 17/149 (11%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 14 QEILQQTQDLLEFAAKKIGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPEL 73 Query: 93 SDGCSSL-----------------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 +G++ ++ + +A G FE + L +HGFL Sbjct: 74 DITFEDEELAENPELAEMMSEFDAYIGELFISIDKAHEQAEEYGHSFEREMGFLSVHGFL 133 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGI 164 H+ GYDH ++ M L+ IL G+ Sbjct: 134 HINGYDHYTPEEEAEMFSLQEEILTAYGL 162 >gi|317051561|ref|YP_004112677.1| hypothetical protein Selin_1386 [Desulfurispirillum indicum S5] gi|316946645|gb|ADU66121.1| protein of unknown function UPF0054 [Desulfurispirillum indicum S5] Length = 152 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 4/110 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYEIIEI 113 ++++ ++ +N +YR D T+VLSF ++ + ++GD+ L ++I Sbjct: 38 VNVLLCGREAMQQMNAQYRSRDYATDVLSFQYYESTELSGNTDPDEVIGDMALCLDVIRE 97 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD-ACVMEGLERSILEDL 162 A G FE L +IIHG LH+ GYDH ++ A M+ E +L+ L Sbjct: 98 NAVSRGVSFEEELSFMIIHGILHVCGYDHEISEEHAQQMQQQELRLLDLL 147 >gi|289433031|ref|YP_003462904.1| hypothetical protein DehalGT_1088 [Dehalococcoides sp. GT] gi|288946751|gb|ADC74448.1| protein of unknown function UPF0054 [Dehalococcoides sp. GT] Length = 160 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 19/163 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ I V + + L F K +++ K + EL +V T I+ L Sbjct: 1 MEINIIV-------KPPFKKLVSAQFLKKIASETLKAQAADPSS-ELGIVITGQEEIKEL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG-----------CSSLMLGDIVLAYEIIEIEANVLG 119 N +YR +D+PT+VLSF + + + LG+++++Y E++A G Sbjct: 53 NCKYRQLDEPTDVLSFYMLEENPENLTAPDDFPTPPDEATHLGEVIISYPQAELQAGAAG 112 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L L+IHG LHLLGYDH + VM+ + ++ + Sbjct: 113 HSVNHELAFLLIHGVLHLLGYDHHETAAEAVMKSHQDIAMKHI 155 >gi|148998597|ref|ZP_01826037.1| hypothetical protein CGSSp11BS70_06353 [Streptococcus pneumoniae SP11-BS70] gi|149006356|ref|ZP_01830068.1| hypothetical protein CGSSp18BS74_03564 [Streptococcus pneumoniae SP18-BS74] gi|168575629|ref|ZP_02721565.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016] gi|307067624|ref|YP_003876590.1| putative metal-dependent hydrolase [Streptococcus pneumoniae AP200] gi|147755595|gb|EDK62642.1| hypothetical protein CGSSp11BS70_06353 [Streptococcus pneumoniae SP11-BS70] gi|147762133|gb|EDK69095.1| hypothetical protein CGSSp18BS74_03564 [Streptococcus pneumoniae SP18-BS74] gi|183578494|gb|EDT99022.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016] gi|306409161|gb|ADM84588.1| Predicted metal-dependent hydrolase [Streptococcus pneumoniae AP200] gi|332075583|gb|EGI86051.1| hypothetical protein SPAR148_0923 [Streptococcus pneumoniae GA17545] gi|332202822|gb|EGJ16891.1| hypothetical protein SPAR69_0936 [Streptococcus pneumoniae GA41317] Length = 165 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E E+ + L + + E+++ F + R L Sbjct: 1 MYIEMVDETGQVSKEM---------LQQTQEILEFAAKKLGKEDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPELEIAFDEEDLLENPELAEMMSEFDAYIGELFISIDKAHE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|332638285|ref|ZP_08417148.1| metal-dependent hydrolase [Weissella cibaria KACC 11862] Length = 160 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 18/165 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL I ++ + + K + Y + E+S+ F ++ I+ Sbjct: 1 MDLAIIDQSKP-----GVPAEQIELVEKVLDYAGK--YMKLPDDTEMSVTFVNNDEIQRY 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL----------MLGDIVLAYEIIEIEANVLGK 120 N EYRG+DKPT+V+SF D + +GDI+++ + I +A L Sbjct: 54 NREYRGLDKPTDVISFAIEEDGDDMPLMMDEDMAEDLAKNIGDIIVSVDKIGEQAEYLEH 113 Query: 121 EFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGI 164 +E L L++HGFLHL GYDH+ D+D +M L+R IL+ G+ Sbjct: 114 SYERELGFLVVHGFLHLNGYDHMRSDEDEKIMFDLQREILDSYGL 158 >gi|30682927|ref|NP_850072.1| haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] gi|20466676|gb|AAM20655.1| unknown protein [Arabidopsis thaliana] gi|26452541|dbj|BAC43355.1| unknown protein [Arabidopsis thaliana] gi|133778884|gb|ABO38782.1| At2g25870 [Arabidopsis thaliana] gi|330252671|gb|AEC07765.1| haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana] Length = 584 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 18/156 (11%) Query: 4 KKVNLPRLDLQIAVENALWGDEIHLRTLCEV-------VFAKAVSNLISKGYFVKE---- 52 KK L + I +E D++ ++ + E+ A + L Y +E Sbjct: 98 KKKQELELSVSICIEE-QLPDDLEIQNIAEMLRLNVPMAMTLAFNGLKDSKYKTRETDIE 156 Query: 53 -----NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLA 107 VELS++ + I LN E+RG D T+VLS + LM+GD+V++ Sbjct: 157 DLGGYETVELSVMLCNDDFICKLNKEWRGEDHATDVLSM-SQHVPELKLPVLMMGDLVIS 215 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 E +A G + + L+IHG LHLLG+DH Sbjct: 216 VETAARQAAERGHTLLDEIRILVIHGLLHLLGFDHE 251 >gi|302338950|ref|YP_003804156.1| protein of unknown function UPF0054 [Spirochaeta smaragdinae DSM 11293] gi|301636135|gb|ADK81562.1| protein of unknown function UPF0054 [Spirochaeta smaragdinae DSM 11293] Length = 153 Score = 89.3 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 4/113 (3%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYE 109 ELS++F + + LN +RGID PT+VLSF + S+ GDIV++ + Sbjct: 35 NWELSILFCNDDTMRDLNRTWRGIDAPTDVLSFSQLEEENVVSGSEDGSVYAGDIVISLD 94 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +++ + + E L L+IHG LHL GYDH ++ + M L+ I++ Sbjct: 95 TLDLHSKLFSVAREEELKRLLIHGILHLAGYDHETNEGSEPMLTLQEEIVKTF 147 >gi|148992898|ref|ZP_01822517.1| hypothetical protein CGSSp9BS68_07482 [Streptococcus pneumoniae SP9-BS68] gi|149019558|ref|ZP_01834877.1| hypothetical protein CGSSp23BS72_03128 [Streptococcus pneumoniae SP23-BS72] gi|168490214|ref|ZP_02714413.1| conserved hypothetical protein [Streptococcus pneumoniae SP195] gi|147928350|gb|EDK79366.1| hypothetical protein CGSSp9BS68_07482 [Streptococcus pneumoniae SP9-BS68] gi|147930933|gb|EDK81913.1| hypothetical protein CGSSp23BS72_03128 [Streptococcus pneumoniae SP23-BS72] gi|183571419|gb|EDT91947.1| conserved hypothetical protein [Streptococcus pneumoniae SP195] gi|332073300|gb|EGI83779.1| uncharacterized UPF0054 family protein [Streptococcus pneumoniae GA17570] Length = 165 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E E+ + L + + E+++ F + R L Sbjct: 1 MYIEMVDETGQVSKEM---------LQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + Sbjct: 52 NLEYRNTDRPTDVISLEYKPELEIAFDEEDLLENSELAEMMSEFDAYIGELFISSDKAHE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|297822029|ref|XP_002878897.1| hypothetical protein ARALYDRAFT_901259 [Arabidopsis lyrata subsp. lyrata] gi|297324736|gb|EFH55156.1| hypothetical protein ARALYDRAFT_901259 [Arabidopsis lyrata subsp. lyrata] Length = 584 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 18/156 (11%) Query: 4 KKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENI--------- 54 KK L + I +E D++ ++ + E++ + +K++ Sbjct: 98 KKKQELELSVSICIEE-QLPDDLEIQNIAEMLRLNVPMAMTLAFNGLKDSKYKTRETDIE 156 Query: 55 -------VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLA 107 VELS++ + I LN E+RG D T+VLS + LM+GDIV++ Sbjct: 157 DLGGYETVELSVMLCNDDFICKLNKEWRGEDHATDVLSM-SQHVPELKLPVLMMGDIVIS 215 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 E +A G + + L+IHG LHLLG+DH Sbjct: 216 VETAARQAAERGHTLLDEIRILVIHGLLHLLGFDHE 251 >gi|257452112|ref|ZP_05617411.1| metal-binding protein [Fusobacterium sp. 3_1_5R] gi|317058658|ref|ZP_07923143.1| metal-binding protein [Fusobacterium sp. 3_1_5R] gi|313684334|gb|EFS21169.1| metal-binding protein [Fusobacterium sp. 3_1_5R] Length = 164 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 74/156 (47%), Gaps = 4/156 (2%) Query: 13 LQIAVENALWGDEIHLRTLCEV---VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++++VE ++ + E V + + +++ + +SL+ T + +I+ Sbjct: 5 VEVSVEYEKNDYAEFIQEITENNNEVLTEYIEEVLTMEKIESTLPLYVSLLLTGNEQIQG 64 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-LGDIVLAYEIIEIEANVLGKEFENHLVH 128 +N E+R D PT+V+SF LGDIV++ + + +A F + Sbjct: 65 INREFRKKDSPTDVISFAYHENEDFLVGPYDTLGDIVISLDRVGEQAKEYNHSFTREFYY 124 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ HG LH+LGYDH++++D M E IL G Sbjct: 125 VLTHGILHILGYDHIEEEDKKEMREREEEILGHFGY 160 >gi|270308535|ref|YP_003330593.1| hypothetical protein DhcVS_1151 [Dehalococcoides sp. VS] gi|270154427|gb|ACZ62265.1| hypothetical protein DhcVS_1151 [Dehalococcoides sp. VS] Length = 160 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 19/163 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ + V + + L F K +++ K N EL +V T I+ L Sbjct: 1 MEINVIV-------KPPFKKLVSSQFLKKIASETLKAQAADPNS-ELGIVITGQEEIKDL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG-----------CSSLMLGDIVLAYEIIEIEANVLG 119 NF+YR +D+PT+VLSF + + ++ LG+++++Y EI+A+ G Sbjct: 53 NFKYRELDEPTDVLSFYMLEENPENLTAPDDFPTPPDENIHLGEVIISYPQAEIQASAAG 112 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L+IHG LHLLGYDH + VM+ + ++ + Sbjct: 113 HSVNYEIAFLLIHGVLHLLGYDHHEPVSEAVMKSHQDIAMKHI 155 >gi|301794105|emb|CBW36511.1| conserved hypothetical protein [Streptococcus pneumoniae INV104] gi|332204970|gb|EGJ19035.1| hypothetical protein SPAR120_0938 [Streptococcus pneumoniae GA47901] Length = 165 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E E+ + L + + E+++ F + R L Sbjct: 1 MYIEMVDETGQVSKEM---------LQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N YR D+PT+V+S +G++ ++ + Sbjct: 52 NLGYRDTDRPTDVISLEYKPELEIAFDEEDLLENPELAEMMSEFDAYIGELFISIDKAHE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|301064609|ref|ZP_07205005.1| translation metalloprotein YbeY [delta proteobacterium NaphS2] gi|300441357|gb|EFK05726.1| translation metalloprotein YbeY [delta proteobacterium NaphS2] Length = 128 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 6/113 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL-----MLGDIVLAYEI 110 ELS++FTD + LN +YR + T+VLSF A + MLGD+V++ + Sbjct: 16 ELSILFTDDENMAVLNRQYRQKEGATDVLSFSMQEALDGEDGTPLFETVMLGDVVISVDT 75 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDL 162 +A LG+ FE + L+IHG LHL GYDH +D+ M E +L + Sbjct: 76 ALRDAKELGESFEKTVDRLLIHGILHLTGYDHERSQEDSERMMAAEERLLALI 128 >gi|269926173|ref|YP_003322796.1| protein of unknown function UPF0054 [Thermobaculum terrenum ATCC BAA-798] gi|269789833|gb|ACZ41974.1| protein of unknown function UPF0054 [Thermobaculum terrenum ATCC BAA-798] Length = 131 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 2/106 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 +S++ TD +I L+ E+ GI+ PT+V+S+P++ + + LGDI ++ E E +A Sbjct: 13 SVSILLTDDDQIAKLHLEHMGIEGPTDVMSWPSSD--FERENFHFLGDIAVSCETAEAQA 70 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 G E + L +HG LHLLG+D ++ M+ I+ Sbjct: 71 RDQGHPVETEVSVLAVHGLLHLLGWDDQTPQEREEMQKRVDYIVSK 116 >gi|17061811|gb|AAK74138.1| C21orf57 isoform A protein [Homo sapiens] Length = 299 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 8/118 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSFP D LGDI Sbjct: 165 QKFDLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHEHLKAGEFPQPDFPDDYNLGDIF 224 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 L E I + +++ + L HG HLLG+ H + + M E+++L++LG Sbjct: 225 LGVEYIFHQCKE-NEDYNDVLTVTATHGLCHLLGFTHGTEAEWQQMFQKEKAVLDELG 281 >gi|50365081|ref|YP_053506.1| putative metal-dependent hydrolase [Mesoplasma florum L1] gi|59799030|sp|Q6F1K1|RRMF_MESFL RecName: Full=Probable rRNA maturation factor gi|50363637|gb|AAT75622.1| putative metal-dependent hydrolase [Mesoplasma florum L1] Length = 169 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 11/154 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + E L E L + + Y +N + LS+ F DS + Sbjct: 1 MISIDFINETDLKVKE--WEDLAKQIINSGFK------YLKLKNKINLSITFLDSEPAQK 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 +N EYR +V SFP + + +GDI + E E ++ + + Sbjct: 53 INQEYRNHSYIPDVTSFPIEMSPQEIKALGYQEIGDIFICIEEAERKSIKYDHSLKEEMG 112 Query: 128 HLIIHGFLHLLGYDHVD-DKDACVMEGLERSILE 160 L HGFLHL+GYDH +KD M ++ IL+ Sbjct: 113 FLFTHGFLHLMGYDHETNEKDEEEMFFIQDEILK 146 >gi|194397080|ref|YP_002037602.1| putative metalloprotease [Streptococcus pneumoniae G54] gi|226702103|sp|B5E486|RRMF_STRP4 RecName: Full=Probable rRNA maturation factor gi|194356747|gb|ACF55195.1| conserved hypothetical protein [Streptococcus pneumoniae G54] Length = 165 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 26/171 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E E+ + L + + E+++ F + R L Sbjct: 1 MYIEMVDETGQVSKEM---------LQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----------------MLGDIVLAYEIIEI 113 N EYR D+PT+V+S +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPELEIAFDEEDLLENPELAEMMSEFDAYIGELFISIDKAHE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAXMFGLQEEILTAYGL 162 >gi|149194504|ref|ZP_01871600.1| hypothetical protein CMTB2_00634 [Caminibacter mediatlanticus TB-2] gi|149135248|gb|EDM23728.1| hypothetical protein CMTB2_00634 [Caminibacter mediatlanticus TB-2] Length = 137 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 45/126 (35%), Positives = 62/126 (49%), Gaps = 9/126 (7%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + L F+ + VEL + T I+ LN EYR DKPT+VLSFP + Sbjct: 14 IEKLYEIYNFLTDKDVEL--ILTTDEEIQKLNKEYRNKDKPTDVLSFPLED-----FPGM 66 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 LG IV++ + + EA G ++ + L IHG LHLLGYDH D M E+ I+ Sbjct: 67 PLGSIVISIDTAKKEAEKFGHSIDDEIKLLFIHGLLHLLGYDHEVDN--GEMREKEKEII 124 Query: 160 EDLGIN 165 E + Sbjct: 125 EKFNLP 130 >gi|325123553|gb|ADY83076.1| hypothetical protein BDGL_002490 [Acinetobacter calcoaceticus PHEA-2] Length = 158 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 55/162 (33%), Positives = 83/162 (51%), Gaps = 8/162 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + ++++ E+ L+ K + + + + E+ + D + L Sbjct: 1 MKISLSLQQDFQSPELELK---RAQLKKIIETTLRHVGY--KEDCEIGVACVDLDESQQL 55 Query: 71 NFEYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YR DKPTNVLSFP+ +L LGD+V+ ++ EA K +NH H Sbjct: 56 NLQYREKDKPTNVLSFPSDIPEEVLPMLDALPLGDLVICIPVVLQEALEQKKTAQNHFAH 115 Query: 129 LIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 L++HG LHLLGYDH D+DA MEGLE IL L I +PY+ Sbjct: 116 LLVHGVLHLLGYDHETSDEDAEEMEGLEIEILAKLNIANPYQ 157 >gi|289548111|ref|YP_003473099.1| hypothetical protein Thal_0337 [Thermocrinis albus DSM 14484] gi|289181728|gb|ADC88972.1| protein of unknown function UPF0054 [Thermocrinis albus DSM 14484] Length = 161 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 46/115 (40%), Positives = 62/115 (53%), Gaps = 4/115 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VELSL T I LN EYRG DKPT+VLSFP S +LGDIV++++ + + Sbjct: 38 VELSLYITTDQVIRELNREYRGKDKPTDVLSFPIGE---KVGSFTLLGDIVISWDTAKKQ 94 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPY 168 A G E + L +HG +HLLGYDH ++ LE +L +L P+ Sbjct: 95 AKEYGHSTEEEIKRLALHGLVHLLGYDHELGGEEERKFFSLENYLLSELSHIAPW 149 >gi|313682547|ref|YP_004060285.1| hypothetical protein Sulku_1423 [Sulfuricurvum kujiense DSM 16994] gi|313155407|gb|ADR34085.1| protein of unknown function UPF0054 [Sulfuricurvum kujiense DSM 16994] Length = 187 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ L+ TD+ I +N E+RGIDK T+VLSFP+ D LG IV++ + + A Sbjct: 75 EIELILTDNVEIAEINREFRGIDKATDVLSFPS-----DPFPGAPLGSIVISVDKVASVA 129 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 N L ++ + L IHG LHLLG+DH D M E ++E + Sbjct: 130 NELKHSEDHEIALLFIHGMLHLLGFDHEVDN--GEMRQKEIELIETFKLP 177 >gi|326432698|gb|EGD78268.1| hypothetical protein PTSG_09333 [Salpingoeca sp. ATCC 50818] Length = 180 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 8/128 (6%) Query: 41 SNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-------ASS 93 ++L ++ ++++ F + R+ +N +YRG+ T+VLSFP Sbjct: 27 AHLKCARELLRVADYDMAVTFVSAERMREINQQYRGVGASTDVLSFPFHEVTTPGTLPPV 86 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 + LGDI L+ + I+ + ++ L + HG HLLGYDH +A M Sbjct: 87 EFEDEKDLGDIFLSLDTIQAQQTSH-LTLQDELKVVATHGLCHLLGYDHDTQANATKMAE 145 Query: 154 LERSILED 161 ER ILE Sbjct: 146 KEREILER 153 >gi|312880027|ref|ZP_07739827.1| protein of unknown function UPF0054 [Aminomonas paucivorans DSM 12260] gi|310783318|gb|EFQ23716.1| protein of unknown function UPF0054 [Aminomonas paucivorans DSM 12260] Length = 171 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 6/135 (4%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 L+ V+A+ + + + E+S+ F D + + LN YR ++ PT+VLSFP Sbjct: 24 LQDRIRCVWARLLLAEGTLPSGEETREAEVSVSFVDPNSMAELNRTYRQVEGPTDVLSFP 83 Query: 88 TAFAS----SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 L LGD+V+ + + + G E ++ ++ HGFLHLLG+DH Sbjct: 84 LWEEEGRFCPPPWEVLPLGDVVICPDQV--QPQEGGGSKERQMLLVLHHGFLHLLGWDHD 141 Query: 144 DDKDACVMEGLERSI 158 + M L+ + Sbjct: 142 TPQKEQDMWELQERM 156 >gi|241895553|ref|ZP_04782849.1| metal-dependent hydrolase [Weissella paramesenteroides ATCC 33313] gi|241871131|gb|EER74882.1| metal-dependent hydrolase [Weissella paramesenteroides ATCC 33313] Length = 160 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 11/130 (8%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----------GC 96 Y E+S+ F ++ I+ N EYRG+DK T+V+SF D Sbjct: 30 KYLSLPENTEMSVTFVNNDEIQRYNREYRGLDKATDVISFAIEDDGDDLPLLIDDEMADD 89 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLE 155 + +GDI+++ + I +A L +E L L++HGFLHL GYDH+ + D +M L+ Sbjct: 90 IAKNIGDIIVSVDKIGEQAEYLEHSYERELGFLVVHGFLHLNGYDHMRSEADEKIMFDLQ 149 Query: 156 RSILEDLGIN 165 R IL+ G+ Sbjct: 150 REILDSYGLK 159 >gi|149546328|ref|XP_001514071.1| PREDICTED: similar to C21orf57 isoform A protein [Ornithorhynchus anatinus] Length = 165 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 7/116 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA-------SSDGCSSLMLGDIVLA 107 +L +V D+ I+ +N YR + PT+VLSFP LGD+ L Sbjct: 35 FDLGIVCVDNKNIQRVNNTYRQKNVPTDVLSFPFHENLKAGEMPQPRFPEDYNLGDVFLG 94 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 E I + ++F L + HG HLLGY H + + M E+ IL++L Sbjct: 95 VEYIFQQCQEGNEDFYGVLTVIAAHGLCHLLGYRHDTEAEWQEMYQKEKHILDELN 150 >gi|116492868|ref|YP_804603.1| metal-dependent hydrolase [Pediococcus pentosaceus ATCC 25745] gi|122265668|sp|Q03F61|RRMF_PEDPA RecName: Full=Probable rRNA maturation factor gi|116103018|gb|ABJ68161.1| Predicted metal-dependent hydrolase [Pediococcus pentosaceus ATCC 25745] Length = 156 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 8/130 (6%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------ 97 + Y + E+S+ + I +N EYR +D+PT+V+SF A D Sbjct: 26 FAGNYLHLDEETEISVTLMHNDEIHQINKEYRNVDRPTDVISFAINDADEDIIMDPEMAE 85 Query: 98 --SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 +GD++++ + + +A LG +E L L +HGFLHL GYDH++ +D M L+ Sbjct: 86 EIPANIGDLMISVDKVAEQAEFLGHSYERELGFLCVHGFLHLNGYDHMEKEDQEKMFPLQ 145 Query: 156 RSILEDLGIN 165 + I+ G+ Sbjct: 146 KEIMNAYGLK 155 >gi|313680087|ref|YP_004057826.1| hypothetical protein Ocepr_1196 [Oceanithermus profundus DSM 14977] gi|313152802|gb|ADR36653.1| protein of unknown function UPF0054 [Oceanithermus profundus DSM 14977] Length = 141 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 1/105 (0%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E++++ RI L + G D T+VLSFPT LGD+ ++ + + +A Sbjct: 37 EVTVILCSDRRIRELKRAHWGEDAATDVLSFPTYEPGDPFLPP-HLGDVWISLDTAQRQA 95 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 G E+ ++ L HG HLLG+DH ++ ++R ILE Sbjct: 96 REQGHALEDEVLTLAAHGLWHLLGHDHTTEEAWRGFRNVQRRILE 140 >gi|331266550|ref|YP_004326180.1| putative metalloprotease [Streptococcus oralis Uo5] gi|326683222|emb|CBZ00840.1| putative metalloprotease [Streptococcus oralis Uo5] Length = 165 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 17/152 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSQEILHQTQEILEFAAQKIGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSL-----------------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAFDEEDLLENPELAEMMSEFDAYIGELFISIDKAHEQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|27904874|ref|NP_778000.1| hypothetical protein bbp393 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29428175|sp|P59478|RRMF_BUCBP RecName: Full=Probable rRNA maturation factor gi|27904272|gb|AAO27105.1| hypothetical protein YbeY [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 154 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 10/161 (6%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 ++ L I + + I L C+ + + + + Y ++ +++ + + I Sbjct: 2 NKKITLNIQIASK---KIIFLPKKCQYLI--WIRSSLMHVY---QSNIKVLIRIVEKSEI 53 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 ++LN+++R +K TN+LSF + +GD+++ EI+ EA E+H Sbjct: 54 KSLNYKFRQKNKATNILSFSY--INDKMIDKNYIGDLIICSEIVTEEAKKKNVTLESHWA 111 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H+ IHG LHLLGY+H + + ME LE I+ L +PY Sbjct: 112 HITIHGILHLLGYNHDNLNNRIKMEYLETKIMASLNYKNPY 152 >gi|73749054|ref|YP_308293.1| hypothetical protein cbdb_A1322 [Dehalococcoides sp. CBDB1] gi|123620002|sp|Q3ZYT5|RRMF_DEHSC RecName: Full=Probable rRNA maturation factor gi|73660770|emb|CAI83377.1| conserved hypothetical protein [Dehalococcoides sp. CBDB1] Length = 166 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 19/163 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ I V + + L F K +++ K + EL +V T I+ L Sbjct: 7 MEINIIV-------KPPFKKLVSAQFLKKIASETLKAQAADPSS-ELGIVITGQEEIKEL 58 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG-----------CSSLMLGDIVLAYEIIEIEANVLG 119 N +YR +D+PT+VLSF + + + LG+++++Y E++A G Sbjct: 59 NCKYRQLDEPTDVLSFYMLEENPENLTAPDDFPTPPDEATHLGEVIISYPQAELQAGAAG 118 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L L+IHG LHLLGYDH + VM+ + ++ + Sbjct: 119 HSVNHELAFLLIHGVLHLLGYDHHETAAEAVMKSHQDIAMKHI 161 >gi|297598866|ref|NP_001046349.2| Os02g0227000 [Oryza sativa Japonica Group] gi|255670736|dbj|BAF08263.2| Os02g0227000 [Oryza sativa Japonica Group] Length = 361 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 18/151 (11%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENI--------------- 54 L++QI +E AL D L V+ + EN Sbjct: 99 ELNVQIGIEEALPDDPTILVISIAEALQMDVAKAAKVAFDHLENSEYKTRDNCISDVNKY 158 Query: 55 --VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 VE+S++ D I LN E+R D T+VLS + L LGDIV++ + + Sbjct: 159 DTVEVSILLCDDDFIRKLNKEWRDEDHATDVLSM-SQHIPGLDIPILQLGDIVISIDTAQ 217 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +A G + + L++HG LHLLG+DH Sbjct: 218 RQAEERGHTLHDEIRILMVHGLLHLLGFDHE 248 >gi|153816465|ref|ZP_01969133.1| hypothetical protein RUMTOR_02718 [Ruminococcus torques ATCC 27756] gi|145846207|gb|EDK23125.1| hypothetical protein RUMTOR_02718 [Ruminococcus torques ATCC 27756] Length = 160 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 15/135 (11%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC-------- 96 S Y E+SL+ T I+ +N R ID+ T+VLSFP A + G Sbjct: 24 SLDYVKCPYETEVSLLLTTDEEIKEINRMQRQIDRATDVLSFPMADYETPGDFSHLDEDA 83 Query: 97 -------SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 LMLGDIV++ + + +A G LI H LHL GYDH+++ + Sbjct: 84 GLFHPDTGELMLGDIVISVDKVFEQAEEYGHSLLREYAFLIAHSMLHLFGYDHMEEVERK 143 Query: 150 VMEGLERSILEDLGI 164 ME ++ I+E + I Sbjct: 144 EMEMHQKKIMELVNI 158 >gi|116327964|ref|YP_797684.1| metal-dependent hydrolase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330845|ref|YP_800563.1| metal-dependent hydrolase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281401|sp|Q04TG5|RRMF_LEPBJ RecName: Full=Probable rRNA maturation factor gi|122284244|sp|Q052J4|RRMF_LEPBL RecName: Full=Probable rRNA maturation factor gi|116120708|gb|ABJ78751.1| Metal-dependent hydrolase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124534|gb|ABJ75805.1| Metal-dependent hydrolase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 143 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 15/130 (11%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD------------- 94 +K+ EL L+ + +N RG DK T+VLSFP F S+ Sbjct: 11 KELKDFPCELGLLLVGDSDMRKINRLRRGKDKTTDVLSFPLEFDSAPLQNVLQKRTGFDS 70 Query: 95 -GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVME 152 + LG+IV++ + +E +A +G ++ L++HGFLHLLGYDH +++ +M+ Sbjct: 71 NSLPPIALGEIVISVDTLEKQAVEIGHSVKDEFYRLLVHGFLHLLGYDHERGEEEERIMK 130 Query: 153 GLERSILEDL 162 E LE L Sbjct: 131 LKEDECLEIL 140 >gi|291166726|gb|EFE28772.1| metalloprotease [Filifactor alocis ATCC 35896] Length = 162 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 19/166 (11%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKE--NIVELSLVFTDSHRI 67 + + +E+ + VF K +S++I + E+SL + +I Sbjct: 1 MIRILWEIEDY--------ESDINPVFQKTLSDIIEYAMETEHLTGDYEVSLSVVSADQI 52 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSS---------LMLGDIVLAYEIIEIEANVL 118 LN +R ID+ T+VLSFP + +GDIVL Y+ +A Sbjct: 53 RELNANFRQIDRITDVLSFPMYEREELDEIEEKKEYEDYEVNIGDIVLCYDRAVEQAKEY 112 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G + + +L+ H HLLGYDH+++++ +M E +L I Sbjct: 113 GHSLKREICYLVTHSIFHLLGYDHMEEEEKQMMRTREEQVLSHFHI 158 >gi|317500212|ref|ZP_07958443.1| hypothetical protein HMPREF1026_00385 [Lachnospiraceae bacterium 8_1_57FAA] gi|331087560|ref|ZP_08336491.1| metalloprotease [Lachnospiraceae bacterium 3_1_46FAA] gi|316898383|gb|EFV20423.1| hypothetical protein HMPREF1026_00385 [Lachnospiraceae bacterium 8_1_57FAA] gi|330400700|gb|EGG80304.1| metalloprotease [Lachnospiraceae bacterium 3_1_46FAA] Length = 164 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 15/135 (11%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC-------- 96 S Y E+SL+ T I+ +N R ID+ T+VLSFP A + G Sbjct: 28 SLDYVKCPYETEVSLLLTTDEEIKEINRMQRQIDRATDVLSFPMADYETPGDFSHLDEDA 87 Query: 97 -------SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 LMLGDIV++ + + +A G LI H LHL GYDH+++ + Sbjct: 88 GLFHPDTGELMLGDIVISVDKVFEQAEEYGHSLLREYAFLIAHSMLHLFGYDHMEEVERK 147 Query: 150 VMEGLERSILEDLGI 164 ME ++ I+E + I Sbjct: 148 EMEMHQKKIMELVNI 162 >gi|312863688|ref|ZP_07723926.1| translation metalloprotein YbeY [Streptococcus vestibularis F0396] gi|322517153|ref|ZP_08070037.1| metalloprotease [Streptococcus vestibularis ATCC 49124] gi|311101224|gb|EFQ59429.1| translation metalloprotein YbeY [Streptococcus vestibularis F0396] gi|322124303|gb|EFX95814.1| metalloprotease [Streptococcus vestibularis ATCC 49124] Length = 145 Score = 88.2 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 17/142 (11%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 1 MELLDFAAQKLGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPELDITFDEE 60 Query: 100 -----------------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +G++ ++ + +A G +E + L +HGFLH+ GYDH Sbjct: 61 DLAENPELAEMMGEFDSYIGELFISIDKAREQAEEYGHSYEREMGFLAVHGFLHINGYDH 120 Query: 143 VDDKDACVMEGLERSILEDLGI 164 ++ M GL+ IL G+ Sbjct: 121 YTPEEEAEMFGLQEEILTAYGL 142 >gi|194476814|ref|YP_002048993.1| hypothetical protein PCC_0342 [Paulinella chromatophora] gi|171191821|gb|ACB42783.1| hypothetical protein PCC_0342 [Paulinella chromatophora] Length = 186 Score = 88.2 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 15/174 (8%) Query: 7 NLPRLDLQIAVENAL-----WGDEIHLRTLCEVVFAKAVSNLISKGY-FVKENIVELSLV 60 + P LDL +E W D L +F +S+L S+ + I L L Sbjct: 4 SFPDLDLAFRIECKELSTGIWTDPNKGYKLWHELFRVWLSDLSSELPTIFQAEIYTLGLR 63 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFP---------TAFASSDGCSSLMLGDIVLAYEII 111 + +I+ +N ++R DKPT+VLSF + ++ + LGDI+++ E Sbjct: 64 LINDTQIQKINRDWRQNDKPTDVLSFAANSAEVFHSMSESNIQLNKLVELGDIIISLESA 123 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A L E L L HG LHLLG+DH ++ M + ++ L Sbjct: 124 ARQARELNHSLEEELHWLASHGLLHLLGWDHPNEILLNTMLRRQEKLILKLEYK 177 >gi|218296577|ref|ZP_03497305.1| protein of unknown function UPF0054 [Thermus aquaticus Y51MC23] gi|218243119|gb|EED09651.1| protein of unknown function UPF0054 [Thermus aquaticus Y51MC23] Length = 139 Score = 88.2 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 4/124 (3%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 +A+S L+ + + ++++ T RI L + G D+ T+VLSFP Sbjct: 18 LRRALSALMEELGVGDKA---VTVILTGDRRIRALKRAWWGEDEATDVLSFPHYEPGDPF 74 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 LGDI ++ + +A G E ++ L HG HLLG+DH ++D ++ Sbjct: 75 VPP-HLGDIWISLDTARRQAEARGAPLEEEVLVLAAHGLWHLLGHDHQKEEDWEGFHRVQ 133 Query: 156 RSIL 159 IL Sbjct: 134 ERIL 137 >gi|255994494|ref|ZP_05427629.1| putative metalloprotease [Eubacterium saphenum ATCC 49989] gi|255993207|gb|EEU03296.1| putative metalloprotease [Eubacterium saphenum ATCC 49989] Length = 178 Score = 88.2 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 10/121 (8%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----------AFASSDGCSSLML 101 ++ +E+S+ F I+ LN +YRG D T+VLSFP C +ML Sbjct: 56 KDRIEVSVSFVSEDSIKQLNLDYRGKDSITDVLSFPMISTREEFNPEYDVDLGFCDKIML 115 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 GD+V+ +A +G+ +V+L IH LHLLG DH+D+ D +M E+ +++ Sbjct: 116 GDVVICLARASKQAADIGQSLSREVVYLFIHSVLHLLGMDHIDEADKEMMRSFEKKVVKK 175 Query: 162 L 162 L Sbjct: 176 L 176 >gi|320450010|ref|YP_004202106.1| hypothetical protein TSC_c09320 [Thermus scotoductus SA-01] gi|320150179|gb|ADW21557.1| conserved hypothetical protein [Thermus scotoductus SA-01] Length = 138 Score = 88.2 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 4/125 (3%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 +A+S L+ + + ++++ T RI L E+ G D+ T+VLSFP Sbjct: 17 LRRALSALMEELGVGDKA---VTVILTGDRRIRVLKREWWGEDEATDVLSFPHYEPGDPF 73 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 LGDI ++ + + +A G E ++ L HG HLLG+DH ++D ++ Sbjct: 74 VPP-HLGDIWISLDTAKRQAEERGVPLEEEVLVLAAHGLWHLLGHDHQKEEDWEGFHRVQ 132 Query: 156 RSILE 160 IL Sbjct: 133 ERILA 137 >gi|291550420|emb|CBL26682.1| conserved hypothetical protein TIGR00043 [Ruminococcus torques L2-14] Length = 165 Score = 88.2 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 22/163 (13%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 E + + +V A+ E++L+ T++ +I +N E RGI Sbjct: 7 EEGNIKLDFDTEEIAALVIDAALELADCPY------EAEINLLLTENAQIHEMNLEQRGI 60 Query: 78 DKPTNVLSFPTAFASSDGC----------------SSLMLGDIVLAYEIIEIEANVLGKE 121 D+PT+VLSFP G LMLGDIV++ E + +A G Sbjct: 61 DRPTDVLSFPMIEYEEPGDFSVIDEESAEAFNPESGELMLGDIVISKEKVLSQAEEYGHL 120 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + LI H LHL GYDH+ D++ VME ++ I+E +GI Sbjct: 121 PKREYAFLIAHSMLHLFGYDHMVDEERVVMEAKQKEIMEKVGI 163 >gi|158334602|ref|YP_001515774.1| hypothetical protein AM1_1432 [Acaryochloris marina MBIC11017] gi|189038694|sp|B0C7R9|RRMF_ACAM1 RecName: Full=Probable rRNA maturation factor gi|158304843|gb|ABW26460.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 176 Score = 88.2 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 7/138 (5%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 + F +L ++ ELSL+ TD I+ LN YR +D+PT+VL+F T + Sbjct: 37 QSWFQHWFEHLQPSISPIQ--TYELSLLLTDDAAIQNLNATYRHLDRPTDVLAFATLDLT 94 Query: 93 SDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + LGDI+++ E +A L L HG LHLLG+DH + Sbjct: 95 EQPTDLWSEMPVELGDIIISVETAAQQAQEQQHPLPQELAWLATHGLLHLLGWDHPTPER 154 Query: 148 ACVMEGLERSILEDLGIN 165 M ++ ++ ++ Sbjct: 155 LQDMLAQQQLLINLTNVS 172 >gi|296081586|emb|CBI20591.3| unnamed protein product [Vitis vinifera] Length = 570 Score = 88.2 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 VELS++ + I LN E+R D T+VLS + LMLGDIV++ E Sbjct: 148 ENVELSVLLCNDEFIRKLNKEWRDEDHATDVLSM-SQHIPELKLPILMLGDIVISVETAA 206 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +A G + + L++HG LHLLG+DH Sbjct: 207 RQAEERGHTLLDEIRILMVHGLLHLLGFDHE 237 >gi|328950644|ref|YP_004367979.1| metalloprotease ybeY [Marinithermus hydrothermalis DSM 14884] gi|328450968|gb|AEB11869.1| metalloprotease ybeY [Marinithermus hydrothermalis DSM 14884] Length = 141 Score = 88.2 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 4/131 (3%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + ++ L+ + + + ++++ RI L Y G D PT+VLSFPT Sbjct: 13 PRGLRPLLRAKLAKLMEELGYAQHA---VTVILCSDRRIRELKRRYWGEDAPTDVLSFPT 69 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 F D LGDI ++ + + +A G E+ ++ L H HLLG+DH ++ Sbjct: 70 -FEPGDPFIPPHLGDIWISLDTAQRQAREAGHTLEDEVLVLAAHALWHLLGHDHASEEAW 128 Query: 149 CVMEGLERSIL 159 ++ IL Sbjct: 129 QGFRRVQERIL 139 >gi|83816771|ref|YP_446198.1| hypothetical protein SRU_2092 [Salinibacter ruber DSM 13855] gi|294508126|ref|YP_003572184.1| Conserved hypothetical protein containing UPF0054 [Salinibacter ruber M8] gi|123528328|sp|Q2S0T3|RRMF_SALRD RecName: Full=Probable rRNA maturation factor gi|83758165|gb|ABC46278.1| conserved hypothetical protein TIGR00043 [Salinibacter ruber DSM 13855] gi|294344454|emb|CBH25232.1| Conserved hypothetical protein containing UPF0054 [Salinibacter ruber M8] Length = 157 Score = 88.2 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 4/114 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLMLGDIVLAYEIIEI 113 LSLV TD + LN Y D T+VLSF + + G++ + + Sbjct: 43 LSLVLTDHDTVRRLNQSYLDHDYDTDVLSFSLREGPAPSSGASGEGIEGEVYVDLDTAAE 102 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 + FE ++HG LHL+GYD M E L + + P Sbjct: 103 RHDEFDTSFEREAYRYVVHGLLHLVGYDDAQPAGQDKMREKEDQYLNAV-LPAP 155 >gi|313678249|ref|YP_004055989.1| hypothetical protein MBOVPG45_0124 [Mycoplasma bovis PG45] gi|312950195|gb|ADR24790.1| conserved hypothetical protein TIGR00043 [Mycoplasma bovis PG45] Length = 152 Score = 87.8 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 9/156 (5%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + + +EN + + E + + + + + + + ++ +I+ Sbjct: 1 MVIVNVNIENGN---SFNFKDEYEEILRN-----LQSYFKLDSKEISVDVSIVNNRKIKK 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASS-DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN +YR D T++LSF S L LG++V+++E +E +A G + Sbjct: 53 LNKQYRQKDYATDILSFDFGDKSLYKDMPFLPLGELVISHEKVEEQAKEFGHSLRREYCY 112 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L HG +HL+GYDH + + M + +I + L I Sbjct: 113 LYAHGLIHLMGYDHELEDERVAMNMMVDAIFDPLNI 148 >gi|87300846|ref|ZP_01083688.1| hypothetical protein WH5701_05340 [Synechococcus sp. WH 5701] gi|87284717|gb|EAQ76669.1| hypothetical protein WH5701_05340 [Synechococcus sp. WH 5701] Length = 202 Score = 87.8 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 52/154 (33%), Gaps = 22/154 (14%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E R L + L ++ L L + LN +R PT+VL Sbjct: 36 EGPWRDLLAAWLEQMQPELPQA---LRAPAYSLGLSLVGDGEMAELNESWRSQQGPTDVL 92 Query: 85 SFPTAFAS-------------------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +F + L LGDIV++ E +A G Sbjct: 93 AFAAQDEGLEGAPAMPKPPELASDQELPEQGEPLELGDIVISLETAARQAEAAGVSLARE 152 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L L HG LHLLG+DH DD M + +L Sbjct: 153 LRWLASHGLLHLLGWDHPDDARLEAMLRRQDQLL 186 >gi|332664486|ref|YP_004447274.1| metalloprotease ybeY [Haliscomenobacter hydrossis DSM 1100] gi|332333300|gb|AEE50401.1| metalloprotease ybeY [Haliscomenobacter hydrossis DSM 1100] Length = 159 Score = 87.8 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 9/140 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 +EI+ + + + ++S+ K ++ ++ VF D + LN EY D T++ Sbjct: 25 EEIYFEPANPELLRRWIEEIVSRE---KRELIFINYVFCDDPYLLKLNQEYLQHDTLTDI 81 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++FP ++ GD+ ++ + I A+ G FE L ++IHG LHL GY Sbjct: 82 ITFPYHD------PPIVEGDVFISVDRIHDNAHQFGVTFEQELHRVMIHGVLHLCGYPDK 135 Query: 144 DDKDACVMEGLERSILEDLG 163 ++ M E L L Sbjct: 136 APEEKARMTEKEDEALNLLK 155 >gi|184159547|ref|YP_001847886.1| metal-dependent hydrolase [Acinetobacter baumannii ACICU] gi|239504223|ref|ZP_04663533.1| metal-dependent hydrolase [Acinetobacter baumannii AB900] gi|260557078|ref|ZP_05829295.1| metal-dependent hydrolase [Acinetobacter baumannii ATCC 19606] gi|332873008|ref|ZP_08440967.1| translation metalloprotein YbeY [Acinetobacter baumannii 6014059] gi|238685532|sp|A3M934|RRMF_ACIBT RecName: Full=Probable rRNA maturation factor gi|238691001|sp|B2HZ57|RRMF_ACIBC RecName: Full=Probable rRNA maturation factor gi|183211141|gb|ACC58539.1| predicted metal-dependent hydrolase [Acinetobacter baumannii ACICU] gi|193078437|gb|ABO13428.2| hypothetical protein A1S_3031 [Acinetobacter baumannii ATCC 17978] gi|260409684|gb|EEX02985.1| metal-dependent hydrolase [Acinetobacter baumannii ATCC 19606] gi|322509457|gb|ADX04911.1| metal-dependent hydrolase [Acinetobacter baumannii 1656-2] gi|323519478|gb|ADX93859.1| metal-dependent hydrolase [Acinetobacter baumannii TCDC-AB0715] gi|332738790|gb|EGJ69658.1| translation metalloprotein YbeY [Acinetobacter baumannii 6014059] Length = 158 Score = 87.8 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 55/162 (33%), Positives = 82/162 (50%), Gaps = 8/162 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + ++++ E+ L+ K + + + + E+ + D L Sbjct: 1 MKISLSLQQDFQSPELELK---RAQLKKIIETTLRHVGY--KEDCEIGIACVDLEESHQL 55 Query: 71 NFEYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YR DKPTNVLSFP+ +L LGD+V+ ++ EA K +NH H Sbjct: 56 NLQYREKDKPTNVLSFPSDIPEEVLPMLDALPLGDLVICIPVVLQEALEQKKTAQNHFAH 115 Query: 129 LIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 L++HG LHLLGYDH D+DA MEGLE IL L I +PY+ Sbjct: 116 LLVHGVLHLLGYDHETSDEDAEEMEGLEIEILAKLNIANPYQ 157 >gi|299768716|ref|YP_003730742.1| metal-dependent hydrolase [Acinetobacter sp. DR1] gi|298698804|gb|ADI89369.1| metal-dependent hydrolase [Acinetobacter sp. DR1] Length = 160 Score = 87.8 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 83/162 (51%), Gaps = 8/162 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + ++++ E+ L+ K + + + + E+ + D + L Sbjct: 1 MKISLSLQQDFQSPELELK---RAQLKKIIETTLRHVGY--KEDCEIGVACVDLAESQQL 55 Query: 71 NFEYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YR DKPTNVLSFP+ +L LGD+V+ ++ EA K +NH H Sbjct: 56 NLQYREKDKPTNVLSFPSDIPEEVLPMLDALPLGDLVICIPVVLQEALEQKKTAQNHFAH 115 Query: 129 LIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 L++HG LHLLGYDH D+DA MEG+E IL L I +PY+ Sbjct: 116 LLVHGVLHLLGYDHETSDEDAEEMEGIEVEILAKLNIENPYQ 157 >gi|242061044|ref|XP_002451811.1| hypothetical protein SORBIDRAFT_04g008060 [Sorghum bicolor] gi|241931642|gb|EES04787.1| hypothetical protein SORBIDRAFT_04g008060 [Sorghum bicolor] Length = 457 Score = 87.8 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 16/152 (10%) Query: 10 RLDLQIAVEN--ALWGDEIHLRTLCEVVFAKAVSNLISKGYFV-------------KENI 54 L +QI +E + + + KAV ++ K Sbjct: 93 ELSVQIGIEEALPDDPEILGIAETLRTDVGKAVKLALNDLEGSDYITRDPSVCNVNKYAS 152 Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 +E+SL+ D I LN E+R D T+VLS + L LGDIV++ E + Sbjct: 153 IEVSLLLCDDDFIRKLNKEWRDEDHATDVLSM-SQHIPELDIPILQLGDIVISVETARRQ 211 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A G + + L++HG LHLLG+DH K Sbjct: 212 AEERGHTLLDEIRILMVHGLLHLLGFDHEVSK 243 >gi|146321259|ref|YP_001200970.1| metalloprotease [Streptococcus suis 98HAH33] gi|223932648|ref|ZP_03624647.1| protein of unknown function UPF0054 [Streptococcus suis 89/1591] gi|253752116|ref|YP_003025257.1| hypothetical protein SSUSC84_1260 [Streptococcus suis SC84] gi|253753941|ref|YP_003027082.1| hypothetical protein SSU1227 [Streptococcus suis P1/7] gi|253755184|ref|YP_003028324.1| hypothetical protein SSUBM407_0562 [Streptococcus suis BM407] gi|330832406|ref|YP_004401231.1| putative metalloprotease [Streptococcus suis ST3] gi|166231363|sp|A4W2I1|RRMF_STRS2 RecName: Full=Probable rRNA maturation factor gi|145692065|gb|ABP92570.1| hypothetical protein SSU98_1412 [Streptococcus suis 98HAH33] gi|223898618|gb|EEF64980.1| protein of unknown function UPF0054 [Streptococcus suis 89/1591] gi|251816405|emb|CAZ52036.1| conserved hypothetical protein [Streptococcus suis SC84] gi|251817648|emb|CAZ55396.1| conserved hypothetical protein [Streptococcus suis BM407] gi|251820187|emb|CAR46557.1| conserved hypothetical protein [Streptococcus suis P1/7] gi|292558698|gb|ADE31699.1| hypothetical protein SSGZ1_1242 [Streptococcus suis GZ1] gi|319758492|gb|ADV70434.1| putative metalloprotease [Streptococcus suis JS14] gi|329306629|gb|AEB81045.1| putative metalloprotease [Streptococcus suis ST3] Length = 165 Score = 87.4 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 17/145 (11%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 + L + + E+++ F D+ R+ +N EYRGID+PT+V+S S Sbjct: 18 EQITELLQFAAEKIGKQNKEMAVTFVDNKRVHEVNLEYRGIDRPTDVVSLEYKPESEIVF 77 Query: 97 SSL-----------------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 +G++ ++ + +A G +E + L +HGFLH+ G Sbjct: 78 DEEDLLDNPELAEMMEDFDAYIGELYISIDKAREQAEDYGHSYEREMGFLAVHGFLHING 137 Query: 140 YDHVDDKDACVMEGLERSILEDLGI 164 YDH ++ M GL+ IL G+ Sbjct: 138 YDHYTPEEEAEMFGLQEEILTAYGL 162 >gi|15617041|ref|NP_240254.1| hypothetical protein BU442 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681793|ref|YP_002468179.1| hypothetical protein BUAP5A_435 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682348|ref|YP_002468732.1| hypothetical protein BUAPTUC7_436 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|25403623|pir||D84981 hypothetical protein [imported] - Buchnera sp. (strain APS) gi|10039106|dbj|BAB13140.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622081|gb|ACL30237.1| hypothetical protein BUAPTUC7_436 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624636|gb|ACL30791.1| hypothetical protein BUAP5A_435 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 111 Score = 87.4 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 49/107 (45%), Positives = 64/107 (59%), Gaps = 2/107 (1%) Query: 62 TDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 D I+ LNF YR +KPTN+LSFP F + +LGD+VL IIE E+ K Sbjct: 2 VDEWEIKKLNFNYRKKNKPTNILSFP--FNKFIKINYKLLGDLVLCKNIIEKESLKYNKS 59 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E+H H+ IHG LHLLGYDH ++K+A +ME LE I+ L P+ Sbjct: 60 LESHWAHITIHGTLHLLGYDHQNNKEADIMERLENKIMLSLNYKKPH 106 >gi|297622689|ref|YP_003704123.1| hypothetical protein Trad_0443 [Truepera radiovictrix DSM 17093] gi|297163869|gb|ADI13580.1| protein of unknown function UPF0054 [Truepera radiovictrix DSM 17093] Length = 147 Score = 87.4 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 2/124 (1%) Query: 36 FAKAVSNLISK-GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 F K + +++ + EL++V D +I LN +RG D PT+VLS+P A Sbjct: 12 FRKRLQAVVTALKAELGAGDKELTIVLVDDPKIRELNRAHRGEDAPTDVLSYPLAEPDDA 71 Query: 95 GCSS-LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 G LGDIV++ + +A G E +V L HG HLLG+DH ++ Sbjct: 72 GFPEVPHLGDIVISLDTAARQAAAQGHTLELEVVTLAAHGLTHLLGFDHPTEEAWTTFRQ 131 Query: 154 LERS 157 + Sbjct: 132 NQAR 135 >gi|312864823|ref|ZP_07725054.1| translation metalloprotein YbeY [Streptococcus downei F0415] gi|311099950|gb|EFQ58163.1| translation metalloprotein YbeY [Streptococcus downei F0415] Length = 165 Score = 87.4 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 17/153 (11%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + + + + K L + + E+++ F D+ +I +N +YR +D+PT+V+S Sbjct: 10 KQVSQEMMDKIKDMLNFAAKKLGKENKEMAITFVDNEKIHQINLDYRDMDRPTDVVSLEY 69 Query: 89 AFASSD-----------------GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 + +G++ ++ + +A G FE + L + Sbjct: 70 KPETDIVFSEEDLETDPDLAAVMEDYDAYIGELFISVDKAHEQAESYGHSFEREMGFLAV 129 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 130 HGFLHINGYDHYTPEEEKEMFTLQEEILTAYGL 162 >gi|78187213|ref|YP_375256.1| hypothetical protein Plut_1354 [Chlorobium luteolum DSM 273] gi|123582883|sp|Q3B368|RRMF_PELLD RecName: Full=Probable rRNA maturation factor gi|78167115|gb|ABB24213.1| Protein of unknown function UPF0054 [Chlorobium luteolum DSM 273] Length = 137 Score = 87.4 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 9/134 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 R L + + +AV +I + +E++ V+ S +N EY D PT+ +SFP Sbjct: 11 RKLDDALLCRAVETVIQGEG---RHALEIAAVYCGSRMSRRINREYLQHDWPTDTISFPY 67 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 G + G+ + ++IE A +FE L + IH LHL GYD +D Sbjct: 68 ------GSGGNVEGEFYICLDVIEENARRFNTDFERELFRVTIHSVLHLAGYDDHLPEDR 121 Query: 149 CVMEGLERSILEDL 162 M E S L+ L Sbjct: 122 RRMTEREDSYLQQL 135 >gi|325181482|emb|CCA15916.1| conserved hypothetical protein [Albugo laibachii Nc14] Length = 165 Score = 87.4 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 7/117 (5%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG-------CSSLMLGD 103 + +LS++ T ++ LN ++R DK T++LSFP+ + G LGD Sbjct: 37 PKYPWDLSVILTTDQQLHRLNKQFRKQDKTTDILSFPSHNINQPGRFPNVRTPEDRYLGD 96 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 I ++ ++ + G + + L HG HL+GYDH D++ M E +L Sbjct: 97 IYISLPYVKKYCDEEGTDINEQMRVLFAHGICHLMGYDHETDQEHERMAKAEDYLLR 153 >gi|113866555|ref|YP_725044.1| unkown domain/putative metalloprotease fusion protein [Ralstonia eutropha H16] gi|113525331|emb|CAJ91676.1| diacylglycerol kinase [Ralstonia eutropha H16] Length = 248 Score = 87.4 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 50/135 (37%), Positives = 67/135 (49%), Gaps = 7/135 (5%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 + + + + L++ F D TLN YRG D TNVL+F A D Sbjct: 118 RRKIETWVKSALYAD---AALTIRFVDEEEGRTLNRTYRGKDYATNVLTFAYAENEED-- 172 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 + GDIVL ++E EA K E H HLI+HG LH GY+H +D +A ME +E Sbjct: 173 --PVTGDIVLCCPVVETEAREQRKPLEAHYAHLIVHGVLHAQGYEHEEDAEAEEMEAIET 230 Query: 157 SILEDLGINDPYEVD 171 L+ LG DPY+ D Sbjct: 231 ETLQALGYADPYQGD 245 >gi|145558833|sp|Q0KE95|RRMF_CUPNH RecName: Full=Probable rRNA maturation factor Length = 198 Score = 87.4 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 50/135 (37%), Positives = 67/135 (49%), Gaps = 7/135 (5%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 + + + + L++ F D TLN YRG D TNVL+F A D Sbjct: 68 RRKIETWVKSALYAD---AALTIRFVDEEEGRTLNRTYRGKDYATNVLTFAYAENEED-- 122 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 + GDIVL ++E EA K E H HLI+HG LH GY+H +D +A ME +E Sbjct: 123 --PVTGDIVLCCPVVETEAREQRKPLEAHYAHLIVHGVLHAQGYEHEEDAEAEEMEAIET 180 Query: 157 SILEDLGINDPYEVD 171 L+ LG DPY+ D Sbjct: 181 ETLQALGYADPYQGD 195 >gi|145558832|sp|Q475N9|RRMF_CUPPJ RecName: Full=Probable rRNA maturation factor Length = 201 Score = 87.4 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 50/118 (42%), Positives = 62/118 (52%), Gaps = 4/118 (3%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 L++ F D LN YRG D TNVL+F A + D + GDIVL ++E Sbjct: 82 DAALTVRFVDEEEGRALNRSYRGKDYATNVLTFAYAESEDD----PVTGDIVLCCPVVET 137 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA K E H HLI+HG LH GY+H DD +A ME +E L+ LG DPY D Sbjct: 138 EAREQRKPLEAHYAHLIVHGVLHAQGYEHEDDAEAEEMEAIETETLQALGFEDPYRDD 195 >gi|283780308|ref|YP_003371063.1| hypothetical protein Psta_2534 [Pirellula staleyi DSM 6068] gi|283438761|gb|ADB17203.1| protein of unknown function UPF0054 [Pirellula staleyi DSM 6068] Length = 143 Score = 87.4 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 15/156 (9%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D+Q+ + + + + AV +++ G E+S+ D + Sbjct: 1 MIDVQVTNRQTRHK-------IDKKLLSSAVRKVLALGEI---KSAEISVAVVDGDEMHQ 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +Y D T+ LSF F + G+++++ + E+ G E+ L+ Sbjct: 51 LNRQYLQHDYTTDCLSFVLDFEDD-----HLEGEVIVSADYAAQESLQYGWRMEDELLLY 105 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +IH LHL+G+D ++ D M E+ IL G+ Sbjct: 106 VIHASLHLIGHDDHEESDIAKMREAEKQILAQFGLE 141 >gi|169794645|ref|YP_001712438.1| hypothetical protein ABAYE0460 [Acinetobacter baumannii AYE] gi|213157984|ref|YP_002320782.1| hypothetical protein AB57_3479 [Acinetobacter baumannii AB0057] gi|215482234|ref|YP_002324416.1| Uncharacterized protein family UPF0054 family protein [Acinetobacter baumannii AB307-0294] gi|301345375|ref|ZP_07226116.1| hypothetical protein AbauAB0_04004 [Acinetobacter baumannii AB056] gi|301511253|ref|ZP_07236490.1| hypothetical protein AbauAB05_06733 [Acinetobacter baumannii AB058] gi|301595635|ref|ZP_07240643.1| hypothetical protein AbauAB059_07482 [Acinetobacter baumannii AB059] gi|332855634|ref|ZP_08435977.1| translation metalloprotein YbeY [Acinetobacter baumannii 6013150] gi|332868553|ref|ZP_08438219.1| translation metalloprotein YbeY [Acinetobacter baumannii 6013113] gi|226703838|sp|B7I9D7|RRMF_ACIB5 RecName: Full=Probable rRNA maturation factor gi|226707624|sp|B7GW53|RRMF_ACIB3 RecName: Full=Probable rRNA maturation factor gi|238688043|sp|B0V6T5|RRMF_ACIBY RecName: Full=Probable rRNA maturation factor gi|169147572|emb|CAM85433.1| conserved hypothetical protein [Acinetobacter baumannii AYE] gi|213057144|gb|ACJ42046.1| conserved hypothetical protein [Acinetobacter baumannii AB0057] gi|213989001|gb|ACJ59300.1| Uncharacterized protein family UPF0054 family protein [Acinetobacter baumannii AB307-0294] gi|332727349|gb|EGJ58785.1| translation metalloprotein YbeY [Acinetobacter baumannii 6013150] gi|332733323|gb|EGJ64516.1| translation metalloprotein YbeY [Acinetobacter baumannii 6013113] Length = 158 Score = 87.4 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 55/162 (33%), Positives = 82/162 (50%), Gaps = 8/162 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + ++++ E+ L+ K + + + + E+ + D L Sbjct: 1 MKISLSLQQDFRSPELELK---RAQLKKIIETTLRHVGY--KEDCEIGIACVDLEESHQL 55 Query: 71 NFEYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YR DKPTNVLSFP+ +L LGD+V+ ++ EA K +NH H Sbjct: 56 NLQYREKDKPTNVLSFPSDIPEEVLPMLDALPLGDLVICIPVVLQEALEQKKTAQNHFAH 115 Query: 129 LIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 L++HG LHLLGYDH D+DA MEGLE IL L I +PY+ Sbjct: 116 LLVHGVLHLLGYDHETSDEDAEEMEGLEIEILAKLNIANPYQ 157 >gi|291296194|ref|YP_003507592.1| hypothetical protein Mrub_1814 [Meiothermus ruber DSM 1279] gi|290471153|gb|ADD28572.1| protein of unknown function UPF0054 [Meiothermus ruber DSM 1279] Length = 140 Score = 87.4 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 1/105 (0%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 L+L+ T+ + I L ++ G D PT+VLSFPT LGDIV++ + +A Sbjct: 36 SLTLILTNDNEIRALKQQHWGEDAPTDVLSFPTYEPGDPFIPP-HLGDIVISLDTARRQA 94 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LG ++ + L H HLLG+DH + + ++ ILE Sbjct: 95 EQLGHSLQHEVKVLAAHSLWHLLGHDHRSETEWEGFRRVQARILE 139 >gi|288817391|ref|YP_003431738.1| putative metalloprotease [Hydrogenobacter thermophilus TK-6] gi|288786790|dbj|BAI68537.1| putative metalloprotease [Hydrogenobacter thermophilus TK-6] Length = 147 Score = 87.4 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 5/142 (3%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISK-GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 + I +R + + + + + E+S+ TD I LN +YRG D+PT Sbjct: 9 RNRIQIRLHKRSIKKAQIEQISERIAELLGLERAEISIYITDDETIRHLNRDYRGKDEPT 68 Query: 82 NVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 +VLSFP + L+LGDIV++++ + +A+ +G E + L+ HGF+HLLGYD Sbjct: 69 DVLSFPICE---KVGNWLILGDIVISFDTAKKQASQMGHSLEEEIKRLLAHGFVHLLGYD 125 Query: 142 HV-DDKDACVMEGLERSILEDL 162 H ++ LE +L++L Sbjct: 126 HELGGEEERKFFELESYVLKNL 147 >gi|113955023|ref|YP_731849.1| hypothetical protein sync_2661 [Synechococcus sp. CC9311] gi|122945509|sp|Q0I6S3|RRMF_SYNS3 RecName: Full=Probable rRNA maturation factor gi|113882374|gb|ABI47332.1| Hypothetical UPF0054 protein [Synechococcus sp. CC9311] Length = 177 Score = 87.4 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 58/169 (34%), Gaps = 19/169 (11%) Query: 10 RLDLQIAV-----------ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKE------ 52 + + +A ++ + E + + L Sbjct: 1 MITIDLAFSPASADLIDAADDEGTRSRLQEAGDWECELSAWIEALRQDHGNHCPEVVRTC 60 Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG--CSSLMLGDIVLAYEI 110 + + L + D I LN +R PT+VLSF + L LGDIV++ Sbjct: 61 DSLSLGISLLDDASIAELNLHWRQKPTPTDVLSFAALESEMPMVAGQELELGDIVVSVPT 120 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A E L L+ HG LHLL +DH D+ M + +L Sbjct: 121 ARRQALEQKHGLERELRWLVSHGLLHLLSWDHPDEDALAAMLQKQEHLL 169 >gi|308750998|gb|ADO44481.1| protein of unknown function UPF0054 [Hydrogenobacter thermophilus TK-6] Length = 144 Score = 87.0 bits (214), Expect = 7e-16, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 5/142 (3%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISK-GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 + I +R + + + + + E+S+ TD I LN +YRG D+PT Sbjct: 6 RNRIQIRLHKRSIKKAQIEQISERIAELLGLERAEISIYITDDETIRHLNRDYRGKDEPT 65 Query: 82 NVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 +VLSFP + L+LGDIV++++ + +A+ +G E + L+ HGF+HLLGYD Sbjct: 66 DVLSFPICE---KVGNWLILGDIVISFDTAKKQASQMGHSLEEEIKRLLAHGFVHLLGYD 122 Query: 142 HV-DDKDACVMEGLERSILEDL 162 H ++ LE +L++L Sbjct: 123 HELGGEEERKFFELESYVLKNL 144 >gi|257458354|ref|ZP_05623502.1| conserved hypothetical protein [Treponema vincentii ATCC 35580] gi|257444289|gb|EEV19384.1| conserved hypothetical protein [Treponema vincentii ATCC 35580] Length = 153 Score = 87.0 bits (214), Expect = 7e-16, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 62/150 (41%), Gaps = 10/150 (6%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 IA+ W D I V + L + ++ +LS+VF I LN Sbjct: 3 NIAI---AWQD-IPEPKWGASV----LPFLQAVLTQLEHTNWDLSVVFCKDAFIHELNKT 54 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSS--LMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR ID PT+VLSF D + GDIV++ + + A L L+I Sbjct: 55 YRHIDSPTDVLSFEQGDEYDDEDGNLRFNAGDIVISLDSLRSNAETFNVTMNEELKRLLI 114 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILED 161 HG LHL G DH D+ M L+ IL Sbjct: 115 HGILHLSGMDHSDNDPQQEMLQLQEKILGS 144 >gi|73540218|ref|YP_294738.1| putative metalloprotease [Ralstonia eutropha JMP134] gi|72117631|gb|AAZ59894.1| Protein of unknown function UPF0054 [Ralstonia eutropha JMP134] Length = 255 Score = 87.0 bits (214), Expect = 7e-16, Method: Composition-based stats. Identities = 50/118 (42%), Positives = 62/118 (52%), Gaps = 4/118 (3%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 L++ F D LN YRG D TNVL+F A + D + GDIVL ++E Sbjct: 136 DAALTVRFVDEEEGRALNRSYRGKDYATNVLTFAYAESEDD----PVTGDIVLCCPVVET 191 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA K E H HLI+HG LH GY+H DD +A ME +E L+ LG DPY D Sbjct: 192 EAREQRKPLEAHYAHLIVHGVLHAQGYEHEDDAEAEEMEAIETETLQALGFEDPYRDD 249 >gi|293610873|ref|ZP_06693173.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827217|gb|EFF85582.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 158 Score = 87.0 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 83/162 (51%), Gaps = 8/162 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + ++++ E+ L+ K + + + + E+ + D + L Sbjct: 1 MKISLSLQQDFQSPELELK---RAQLKKIIETTLHHVGY--KEDCEIGVACVDLDESQQL 55 Query: 71 NFEYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YR DKPTNVLSFP+ +L LGD+V+ ++ EA K +NH H Sbjct: 56 NLQYREKDKPTNVLSFPSDIPEEVLPMLDALPLGDLVICIPVVLQEALEQKKTAQNHFAH 115 Query: 129 LIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 L++HG LHLLGYDH D+DA MEGLE IL + I +PY+ Sbjct: 116 LLVHGVLHLLGYDHETSDEDAEEMEGLEIEILAKINIANPYQ 157 >gi|116626740|ref|YP_828896.1| hypothetical protein Acid_7712 [Candidatus Solibacter usitatus Ellin6076] gi|123124469|sp|Q01P09|RRMF_SOLUE RecName: Full=Probable rRNA maturation factor gi|116229902|gb|ABJ88611.1| protein of unknown function UPF0054 [Candidatus Solibacter usitatus Ellin6076] Length = 147 Score = 87.0 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 10/127 (7%) Query: 39 AVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS 98 A+ + + + T + LN ++R D T+VLSFP+ Sbjct: 22 AIERFARRLQKEVADGAPFDTLITGDAELRRLNRDFRKKDYATDVLSFPS--------GG 73 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGD+ ++ +A G E + L++HG LHLLG+DH + D M LE+ Sbjct: 74 PGLGDLAISLGRARAQAREFGHTIEQEISILMLHGVLHLLGHDH--EVDRGRMASLEKRW 131 Query: 159 LEDLGIN 165 LG+ Sbjct: 132 RAKLGLP 138 >gi|32491196|ref|NP_871450.1| hypothetical protein WGLp447 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30173416|sp|Q8D2A7|RRMF_WIGBR RecName: Full=Probable rRNA maturation factor gi|25166403|dbj|BAC24593.1| ybeY [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 152 Score = 87.0 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 3/131 (2%) Query: 39 AVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS 98 I + + + E++L + I+ LN ++ + PTN+L+FP ++D S Sbjct: 23 KFKFWIKSIFLHFKKVSEINLRLVEKKEIKNLNKKFLKKNYPTNILAFPCIMPNNDQIS- 81 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA-CVMEGLERS 157 LGD+V+ EI+E EA K E+H H+IIHG LHLLGYDH ++ + ME LE Sbjct: 82 -FLGDLVVCSEIVEKEAKNQNKSVESHWAHIIIHGTLHLLGYDHSNNSNKIEEMEILEIK 140 Query: 158 ILEDLGINDPY 168 L G ++PY Sbjct: 141 FLNLFGYHNPY 151 >gi|327260856|ref|XP_003215249.1| PREDICTED: rRNA maturation factor homolog isoform 1 [Anolis carolinensis] gi|327260858|ref|XP_003215250.1| PREDICTED: rRNA maturation factor homolog isoform 2 [Anolis carolinensis] Length = 165 Score = 87.0 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 7/117 (5%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC-------SSLMLGDIV 105 +L ++ + I+ LN YR + PT+VLSFP G LGDI Sbjct: 33 QRFDLGVICVSNRHIQQLNRCYRQKNIPTDVLSFPFHENLKAGELPQHFAQDEYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L E I + +++ N L + HG HLLGY H D M E IL++L Sbjct: 93 LGVEYIYQQCVHYNEDYYNILTVTVAHGLCHLLGYKHSTKADWEEMYKKEAQILQEL 149 >gi|139439607|ref|ZP_01773020.1| Hypothetical protein COLAER_02047 [Collinsella aerofaciens ATCC 25986] gi|133774948|gb|EBA38768.1| Hypothetical protein COLAER_02047 [Collinsella aerofaciens ATCC 25986] Length = 121 Score = 87.0 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 42/102 (41%), Positives = 60/102 (58%), Gaps = 3/102 (2%) Query: 67 IETLNFEYRGIDKPTNVLSFPTA---FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + LN E+RGID+ T+VLSF +L LGDI+LA ++I +A G Sbjct: 1 MHELNHEWRGIDRTTDVLSFECDSAFDEDIPADETLELGDIILAPQVIARQAPGFGNSPA 60 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +++HG LHLLGYDH++D +A VME E +IL DL + Sbjct: 61 DECRLMLVHGMLHLLGYDHIEDDEAEVMEAREDAILRDLALE 102 >gi|254796633|ref|YP_003081469.1| hypothetical protein NRI_0240 [Neorickettsia risticii str. Illinois] gi|254589870|gb|ACT69232.1| conserved hypothetical protein [Neorickettsia risticii str. Illinois] Length = 143 Score = 87.0 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 14/142 (9%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L+++I + W +I + + KA + + E S+V TD I T Sbjct: 1 MLEIRII--DPRWTKKIKN---LDALLQKAFECCL------EGKKAEFSVVLTDDEFIRT 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG D PTNVLSF +++ ++G+++L+++ + IEA +FE+HL+H+ Sbjct: 50 LNKNYRGKDAPTNVLSFNY---TNEQIGIGIIGEVILSFDRLVIEALENEIKFEDHLLHM 106 Query: 130 IIHGFLHLLGYDHVDDKDACVM 151 IHG LH+LGYDH DK+ M Sbjct: 107 FIHGVLHVLGYDHSSDKETLAM 128 >gi|222622464|gb|EEE56596.1| hypothetical protein OsJ_05956 [Oryza sativa Japonica Group] Length = 549 Score = 87.0 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI 110 K + VE+S++ D I LN E+R D T+VLS + L LGDIV++ + Sbjct: 161 KYDTVEVSILLCDDDFIRKLNKEWRDEDHATDVLSM-SQHIPGLDIPILQLGDIVISIDT 219 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 + +A G + + L++HG LHLLG+DH Sbjct: 220 AQRQAEERGHTLHDEIRILMVHGLLHLLGFDHE 252 >gi|169632397|ref|YP_001706133.1| hypothetical protein ABSDF0477 [Acinetobacter baumannii SDF] gi|238688242|sp|B0VQX0|RRMF_ACIBS RecName: Full=Probable rRNA maturation factor gi|169151189|emb|CAO99866.1| conserved hypothetical protein [Acinetobacter baumannii] Length = 158 Score = 87.0 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 8/162 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + ++++ E+ L+ K + + + + E+ + D L Sbjct: 1 MKISLSLQQDFQSPELELK---RAQLKKIIETTLRHVGY--KEDCEIGIACVDLEESHQL 55 Query: 71 NFEYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YR DKPTN LSFP+ +L LGD+V+ ++ EA K +NH H Sbjct: 56 NLQYREKDKPTNALSFPSDIPEEVLPMLDALPLGDLVICIPVVLQEALEQKKTAQNHFAH 115 Query: 129 LIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 L++HG LHLLGYDH D+DA MEGLE IL L I +PY+ Sbjct: 116 LLVHGVLHLLGYDHETSDEDAEEMEGLEIEILAKLNIANPYQ 157 >gi|326403549|ref|YP_004283631.1| putative metalloprotease [Acidiphilium multivorum AIU301] gi|325050411|dbj|BAJ80749.1| putative metalloprotease [Acidiphilium multivorum AIU301] Length = 150 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 12/111 (10%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 ++ D+ ++ LN RG +KPTNVL++ I+LA ++ EA Sbjct: 49 VILADNRTVKALNARDRGRNKPTNVLTYEMPPE------------IILALGVVLREARAA 96 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 + +HL HL++HG LHL G DH + +A ME LE +L LG+ +P++ Sbjct: 97 RRRPAHHLAHLVVHGALHLAGEDHHEAGEARRMERLETRLLHRLGVPNPWK 147 >gi|326791149|ref|YP_004308970.1| metalloprotease ybeY [Clostridium lentocellum DSM 5427] gi|326541913|gb|ADZ83772.1| metalloprotease ybeY [Clostridium lentocellum DSM 5427] Length = 166 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 22/170 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L + E + ++ L + V + + VE+SL D I + Sbjct: 1 MTLYLEDEVDFFKEQHELLEQVKAVINQCLDE------EDVPYEVEVSLTVVDLDAIHEI 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGC----------------SSLMLGDIVLAYEIIEIE 114 N E+R ID+PT+VLSFP G ++LGDI+L + + + Sbjct: 55 NKEHREIDRPTDVLSFPQIDTEYIGHINWDTLDTASCVNYDTEEVILGDIILCADKAKEQ 114 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 AN G + L+ H HLLGYDH+ ++D M + S+L+ L I Sbjct: 115 ANNYGHSLTREVCFLVAHSMFHLLGYDHMTEEDEKTMVRKQESVLQCLSI 164 >gi|57233865|ref|YP_182081.1| hypothetical protein DET1370 [Dehalococcoides ethenogenes 195] gi|123618332|sp|Q3Z6R8|RRMF_DEHE1 RecName: Full=Probable rRNA maturation factor gi|57224313|gb|AAW39370.1| conserved hypothetical protein TIGR00043 [Dehalococcoides ethenogenes 195] Length = 172 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 19/163 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ + V + + L F K +++ K N EL +V T I+ L Sbjct: 13 MEINVIV-------KPPFKKLVSTPFLKKIASKTLKAQAADPNS-ELGIVITGQEEIKDL 64 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG-----------CSSLMLGDIVLAYEIIEIEANVLG 119 N +YRG+D+PT+VLSF + + ++ LG+++++Y E++A Sbjct: 65 NLKYRGLDEPTDVLSFYMLEENPENLTAADDFPTPPDENIHLGEVIISYPQAELQATAAS 124 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + + L+IHG LHLLGYDH + VM+ + ++ + Sbjct: 125 HSVSHEIAFLLIHGVLHLLGYDHHEVVAEAVMKSHQDIAMKHI 167 >gi|146319053|ref|YP_001198765.1| metalloprotease [Streptococcus suis 05ZYH33] gi|166200391|sp|A4VW76|RRMF_STRSY RecName: Full=Probable rRNA maturation factor gi|145689859|gb|ABP90365.1| hypothetical protein SSU05_1399 [Streptococcus suis 05ZYH33] Length = 165 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 17/145 (11%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 + L + + E+++ F D+ R+ +N EYRGID+PT+V+S S Sbjct: 18 EQITELLQFAAEKIGKQNKEMAVTFVDNKRVHEVNLEYRGIDRPTDVVSLEYKPESEIVF 77 Query: 97 SSL-----------------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 +G++ ++ + +A G +E + L +HGFLH+ G Sbjct: 78 DEEDLLDNPELAEMMEDFDAYIGELYISIDKAREQAEDYGHSYEREMGFLAVHGFLHING 137 Query: 140 YDHVDDKDACVMEGLERSILEDLGI 164 YDH ++ M GL+ IL G+ Sbjct: 138 YDHYTPEEEAEMLGLQEEILTAYGL 162 >gi|261839888|gb|ACX99653.1| hypothetical protein HPKB_1090 [Helicobacter pylori 52] Length = 140 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F L+ K V + LV + +N ++RG D T+VL Sbjct: 3 EIDNQTPLESDFL-----LLEKIANVLAPTQIIELVLVSDETMREINRDFRGCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP LG +V+ + + A LG E+ + L IHG LHLLGYDH Sbjct: 58 SFPLEAIP-----HTPLGSVVINMPLAQTNALKLGHSLEDEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 111 EKDKGEQRQKESELIKAFNLP 131 >gi|317177908|dbj|BAJ55697.1| putative metalloprotease [Helicobacter pylori F16] Length = 140 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 7/123 (5%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 L+ K V + LV + +N ++RG D T+VLSFP LG Sbjct: 16 LLEKIANVLAPTQIIELVLVSDETMREINRDFRGCDYATDVLSFPLEAIP-----HTPLG 70 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +V+ + + A LG EN + L IHG LHLLGYDH +KD E +++ Sbjct: 71 SVVINMPLAQTNALKLGHSLENEIALLFIHGVLHLLGYDH--EKDKGEQRQKESELIKAF 128 Query: 163 GIN 165 + Sbjct: 129 NLP 131 >gi|301604850|ref|XP_002932054.1| PREDICTED: putative metalloprotease C21orf57-like [Xenopus (Silurana) tropicalis] Length = 165 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 7/121 (5%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG-------CSSLMLG 102 +K +L ++ + RI +N YRG D T+VLSFP + LG Sbjct: 30 LKVRNFDLGIICVSNARIRHINRVYRGQDSVTDVLSFPFHEDLNPSLLPIPASSDEYNLG 89 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DI L E I + +++ + L +HG HLLG+ H + + M E IL+++ Sbjct: 90 DIYLGVEFIYQQCQKTQEDYSSILTICAVHGLCHLLGHQHNNPEQWKQMLEKETEILKEI 149 Query: 163 G 163 Sbjct: 150 N 150 >gi|260549789|ref|ZP_05824005.1| metal-dependent hydrolase [Acinetobacter sp. RUH2624] gi|260407039|gb|EEX00516.1| metal-dependent hydrolase [Acinetobacter sp. RUH2624] Length = 158 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 8/162 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + ++++ E+ L+ K + + + + E+ + D L Sbjct: 1 MKISLSLQQDFQSPELELK---RAQLKKIIETTLRHVGY--KEDCEIGVACVDLEESHQL 55 Query: 71 NFEYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YR DKPTNVLSFP+ +L LGD+V+ ++ EA K +NH H Sbjct: 56 NLQYREKDKPTNVLSFPSDIPEEVLPMLDALPLGDLVICIPVVLQEALEQKKTAQNHFAH 115 Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LHLLGYDH D+DA ME LE IL L I +PY+ Sbjct: 116 LLVHGVLHLLGYDHEISDEDAEEMESLEIEILAKLNIANPYQ 157 >gi|125538685|gb|EAY85080.1| hypothetical protein OsI_06436 [Oryza sativa Indica Group] Length = 543 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 16/149 (10%) Query: 10 RLDLQIAVENALWGDE--IHLRTLCEVVFAKAVSNLISKGYFVKENI------------- 54 L++QI +E AL D + + ++ AKA + Sbjct: 99 ELNVQIGIEEALPDDPTILSIAEALQMDVAKAAKVAFDHLENSEYKTRDNCISDVNKYDT 158 Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VE+S++ D I LN E+R D T+VLS + L LGDIV++ + + + Sbjct: 159 VEVSILLCDDDFIRKLNKEWRDEDHATDVLSM-SQHIPGLDIPILQLGDIVISIDTAQRQ 217 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 A G + + L++HG LHLLG+DH Sbjct: 218 AEERGHTLHDEIRILMVHGLLHLLGFDHE 246 >gi|307721060|ref|YP_003892200.1| hypothetical protein Saut_1140 [Sulfurimonas autotrophica DSM 16294] gi|306979153|gb|ADN09188.1| protein of unknown function UPF0054 [Sulfurimonas autotrophica DSM 16294] Length = 139 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 7/126 (5%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 V+N + + ++ LV T + I+ +N EYR IDKPT+VLSFP Sbjct: 12 VNNTLLQKIASSVTDKDIELVVTTNDEIQQINKEYRNIDKPTDVLSFPYEE-----MPMS 66 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 LG IV++ +++ +A LG E+ L IHG LHLLGYDH D M E ++ Sbjct: 67 PLGSIVVSQDLVIAKAKELGHAQEDEFTLLFIHGLLHLLGYDHEIDN--GQMRQEEERLI 124 Query: 160 EDLGIN 165 + + Sbjct: 125 NEFNLP 130 >gi|291401045|ref|XP_002716899.1| PREDICTED: C21orf57 isoform A protein-like [Oryctolagus cuniculus] Length = 164 Score = 86.2 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 8/115 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA-------SSDGCSSLMLGDIVLA 107 +L +V D+ I+ +N YRG + PT+VLSFP D LGDI L Sbjct: 35 FDLGVVCVDNRSIQRINRVYRGKNAPTDVLSFPFHENLKAGEFPQPDSPDDYNLGDIFLG 94 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 E I + +++ + L HG HLLG+ H + + M E +L++L Sbjct: 95 VEYIFQQCKD-KEDYYDALAVTATHGLCHLLGFTHSTEAEWRKMYQKEEQVLQEL 148 >gi|49388540|dbj|BAD25662.1| haloacid dehalogenase-like hydrolase-like [Oryza sativa Japonica Group] gi|49388674|dbj|BAD25858.1| haloacid dehalogenase-like hydrolase-like [Oryza sativa Japonica Group] Length = 543 Score = 86.2 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 16/149 (10%) Query: 10 RLDLQIAVENALWGDE--IHLRTLCEVVFAKAVSNLISKGYFVKENI------------- 54 L++QI +E AL D + + ++ AKA + Sbjct: 99 ELNVQIGIEEALPDDPTILSIAEALQMDVAKAAKVAFDHLENSEYKTRDNCISDVNKYDT 158 Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VE+S++ D I LN E+R D T+VLS + L LGDIV++ + + + Sbjct: 159 VEVSILLCDDDFIRKLNKEWRDEDHATDVLSM-SQHIPGLDIPILQLGDIVISIDTAQRQ 217 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 A G + + L++HG LHLLG+DH Sbjct: 218 AEERGHTLHDEIRILMVHGLLHLLGFDHE 246 >gi|239618150|ref|YP_002941472.1| protein of unknown function UPF0054 [Kosmotoga olearia TBF 19.5.1] gi|239506981|gb|ACR80468.1| protein of unknown function UPF0054 [Kosmotoga olearia TBF 19.5.1] Length = 145 Score = 86.2 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 15/154 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I + D L+ L + + L L+++ T + Sbjct: 1 MKIIINNATSKEVDTDRLKELIVKILESELDEL---------PDSTLNVLLTTDEEMTYY 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YR PT+VLSF + +GDIV++ E IE +A G F+ L ++ Sbjct: 52 NETYRHKKGPTDVLSFEYGLDDPE-----AVGDIVISLETIEKQAKEFGNTFQEELSLML 106 Query: 131 IHGFLHLLGYDHV-DDKDACVMEGLERSILEDLG 163 IHG LH+LGYDH D+++A +M + G Sbjct: 107 IHGVLHILGYDHEGDEEEAKIMFEKQEDYFNKYG 140 >gi|332296322|ref|YP_004438245.1| metalloprotease ybeY [Thermodesulfobium narugense DSM 14796] gi|332179425|gb|AEE15114.1| metalloprotease ybeY [Thermodesulfobium narugense DSM 14796] Length = 149 Score = 86.2 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 65/140 (46%), Gaps = 4/140 (2%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + R ++ + K + F+ ELSL+ TD++ I LN E+R D PT+VLS Sbjct: 5 LSKRKRYKLNYIKLKKAIKESMNFLGVGDCELSLLLTDNNEIRILNKEFRKSDCPTDVLS 64 Query: 86 FPTAFA----SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 F S + ++ EI V K FE++L+ L+IHG LH LG+D Sbjct: 65 FEGDMNLGVLGDIVISVERAREDFVSGSYGEIIPEVAKKNFESYLLWLVIHGILHNLGFD 124 Query: 142 HVDDKDACVMEGLERSILED 161 H DD M ER LE Sbjct: 125 HNDDVSERKMRSKERDCLEK 144 >gi|225429386|ref|XP_002278343.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1499 Score = 86.2 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 VELS++ + I LN E+R D T+VLS + LMLGDIV++ E Sbjct: 1077 ENVELSVLLCNDEFIRKLNKEWRDEDHATDVLSM-SQHIPELKLPILMLGDIVISVETAA 1135 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +A G + + L++HG LHLLG+DH Sbjct: 1136 RQAEERGHTLLDEIRILMVHGLLHLLGFDHE 1166 >gi|197294661|ref|YP_001799202.1| hypothetical protein PAa_0617 [Candidatus Phytoplasma australiense] gi|226707789|sp|B1VAH8|RRMF_PHYAS RecName: Full=Probable rRNA maturation factor gi|171853988|emb|CAM11951.1| Conserved hypothetical protein [Candidatus Phytoplasma australiense] Length = 144 Score = 86.2 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 66/125 (52%) Query: 41 SNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM 100 L+ + + + ++ LVF +I+ LN +R + T+VLSFP F+ + Sbjct: 17 QQLLIQLFSQIKENNQMHLVFVTKEKIKQLNTFFRKKNFVTDVLSFPNEFSFNPNLKDDS 76 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LGD+ + +E +++A L E + L++HGFLHL GY H ++++ M L+ IL+ Sbjct: 77 LGDVFICFEQAQLQAQKLLHSLEREIAFLVVHGFLHLKGYQHNNEEELEKMIHLQEKILK 136 Query: 161 DLGIN 165 + + Sbjct: 137 KINLE 141 >gi|301165909|emb|CBW25482.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 206 Score = 86.2 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 65/151 (43%), Gaps = 12/151 (7%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 V K + G EL L I+ LN E+R DK T+VLSFP Sbjct: 52 FLEETTKVLQKFIQGTELDGRVKNCENFELDLSLCSEDEIKELNSEHRDKDKVTDVLSFP 111 Query: 88 TA-------FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 +L GDIV+ E+ + +A +E LVHL +HGFLHL GY Sbjct: 112 GYDSLRKGAEDLFIFEENLHFGDIVICREVCQKQAQEFAITYEQELVHLFVHGFLHLCGY 171 Query: 141 DHVDDKDACVM-EGLER----SILEDLGIND 166 DH ++ + LE I E++G+++ Sbjct: 172 DHEISEEEDKIHFSLEELLVKEIYENMGLDN 202 >gi|148260358|ref|YP_001234485.1| hypothetical protein Acry_1355 [Acidiphilium cryptum JF-5] gi|146402039|gb|ABQ30566.1| protein of unknown function UPF0054 [Acidiphilium cryptum JF-5] Length = 150 Score = 86.2 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 12/111 (10%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 ++ D+ ++ LN RG +KPTNVL++ I+LA ++ EA Sbjct: 49 VILADNRTVKALNARDRGRNKPTNVLTYEMPPE------------IILALGVVLREARAA 96 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 + +HL HL++HG LHL G DH + +A ME LE +L LG+ +P++ Sbjct: 97 RRRPAHHLAHLVVHGALHLAGEDHHEAGEARRMERLEARLLHRLGVPNPWK 147 >gi|15639637|ref|NP_219087.1| putative metalloprotease [Treponema pallidum subsp. pallidum str. Nichols] gi|189025875|ref|YP_001933647.1| metalloprotease [Treponema pallidum subsp. pallidum SS14] gi|6686126|sp|O83656|RRMF_TREPA RecName: Full=Probable rRNA maturation factor gi|238689336|sp|B2S3N9|RRMF_TREPS RecName: Full=Probable rRNA maturation factor gi|3322948|gb|AAC65623.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189018450|gb|ACD71068.1| hypothetical protein TPASS_0650 [Treponema pallidum subsp. pallidum SS14] gi|291060019|gb|ADD72754.1| putative metalloprotease [Treponema pallidum subsp. pallidum str. Chicago] Length = 160 Score = 86.2 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 2/108 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA--SSDGCSSLMLGDIVLAYEIIEI 113 +LS+V I LN++YRGID PT+VLSF G + GDI+++ E + Sbjct: 40 DLSIVCCTDAFIRRLNYDYRGIDSPTDVLSFENDGEYCDDAGTRFFLAGDIIISLESVRE 99 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + ++IHG LHL G DH D+ M L+ IL Sbjct: 100 NSERFHVAAHEEFKRVLIHGILHLSGMDHQDNSPGQEMLRLQERILAQ 147 >gi|157412539|ref|YP_001483405.1| metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9215] gi|166980256|sp|A8G2I8|RRMF_PROM2 RecName: Full=Probable rRNA maturation factor gi|157387114|gb|ABV49819.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9215] Length = 179 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 5/149 (3%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 + E+ W + ++ K L Y ++ L L + I +LN ++ Sbjct: 34 LIFESIFWEK--VFLSWINIILKKKDYEL--PNYISEKKSFSLGLRIISNQEIASLNKKW 89 Query: 75 RGIDKPTNVLSFPT-AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 + PT+VLSFP + S + + LGDI ++ E+ ++ ++ L HG Sbjct: 90 MQKNGPTDVLSFPIISDESLNNLDHIELGDIFISLEMALEQSYEYKHTIYREMIWLASHG 149 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDL 162 FLHLLG++H ++ D M L+ ++ L Sbjct: 150 FLHLLGWEHNNENDLENMLNLQEYLITRL 178 >gi|34556974|ref|NP_906789.1| putative metalloprotease [Wolinella succinogenes DSM 1740] gi|46577355|sp|Q7MSD7|RRMF_WOLSU RecName: Full=Probable rRNA maturation factor gi|34482689|emb|CAE09689.1| conserved hypothetical protein [Wolinella succinogenes] Length = 140 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 41/110 (37%), Positives = 56/110 (50%), Gaps = 7/110 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ L+ D + +N E+RGIDK T+VLSFP G L LG I+L+ + + EA Sbjct: 28 EVELILLDDEAMRKINQEHRGIDKSTDVLSFPLE-----GGDFLPLGSILLSIDRVRAEA 82 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + G E L IHG LHLLGYDH + D E ++ G+ Sbjct: 83 ELRGHSIEAEAALLFIHGMLHLLGYDH--EYDQGEQRFKEEELITRFGLP 130 >gi|332872338|ref|XP_001145583.2| PREDICTED: rRNA maturation factor homolog isoform 1 [Pan troglodytes] gi|332872340|ref|XP_003319177.1| PREDICTED: rRNA maturation factor homolog isoform 2 [Pan troglodytes] Length = 167 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 8/118 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSFP D LGDI Sbjct: 33 QKFDLGIICVDNKNIQHINRVYRDRNVPTDVLSFPFHEHLKAGEFPQPDFPDDYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 L E I + +++ + L HG HLLG+ H + + M E+++L++LG Sbjct: 93 LGVEYIFHQCKE-NEDYNDILTVTATHGLCHLLGFTHGTEAEWQQMFQKEKAVLDELG 149 >gi|294054666|ref|YP_003548324.1| protein of unknown function UPF0054 [Coraliomargarita akajimensis DSM 45221] gi|293613999|gb|ADE54154.1| protein of unknown function UPF0054 [Coraliomargarita akajimensis DSM 45221] Length = 153 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 14/155 (9%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + ++ L+I N + + + +F I ELS+VF I Sbjct: 1 MSQIQLEI---NNRYKQLLDPESATVTLFTA-----IEASGHFPIQSGELSIVFVGDPEI 52 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 ++ ++ PT+V++FP G+I+++ + ++ L L Sbjct: 53 GQIHDDFMDDPSPTDVITFPAD------PEMDFAGEIIVSVDHAIRKSKELDLPLTRELS 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 ++HG+LHL GYD +++ D M E+ L+ + Sbjct: 107 LYLVHGWLHLAGYDDLNEADRAEMRKAEQIALDLI 141 >gi|269120554|ref|YP_003308731.1| hypothetical protein Sterm_1944 [Sebaldella termitidis ATCC 33386] gi|268614432|gb|ACZ08800.1| protein of unknown function UPF0054 [Sebaldella termitidis ATCC 33386] Length = 152 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 1/133 (0%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E + V ++ +S + T + I+ +N EYRG D PT+V+SF Sbjct: 19 EEKINEFVDMILEYEKLENTENTYVSFLITTNDVIQNINSEYRGKDTPTDVISFAYNETE 78 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 + G +LGDI+++ E + +A G E +++ HG LHLLGYDH+DD+D VM Sbjct: 79 NIG-PFDILGDIIISAEKVTEQAKEYGHSTEREFYYVLCHGMLHLLGYDHIDDEDKKVMR 137 Query: 153 GLERSILEDLGIN 165 E +L+++G Sbjct: 138 EKEEELLKEIGYE 150 >gi|145572767|sp|A2BUF9|RRMF_PROM5 RecName: Full=Probable rRNA maturation factor Length = 180 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 72/151 (47%), Gaps = 6/151 (3%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 + E++ W + + LC + + N + + I LSL +++ I ++N + Sbjct: 33 NLIFESSFWEEVL----LCWINIILSEKNTSFPNFIFDKKIFSLSLQIINNNEISSINQK 88 Query: 74 YRGIDKPTNVLSFPT--AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 + PT+VLSFP ++ + + LGD+ ++ E+ ++ + ++ L Sbjct: 89 WMDKSGPTDVLSFPMISDEDTTKNLNFIELGDLFISLEMAFQQSLEFDHSIKKEMLWLAS 148 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 HGFLHLLG++H DD + M + ++ L Sbjct: 149 HGFLHLLGWEHNDDNELDNMLNFQEYLISKL 179 >gi|282891330|ref|ZP_06299832.1| hypothetical protein pah_c050o119 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498827|gb|EFB41144.1| hypothetical protein pah_c050o119 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 152 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 5/139 (3%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D+ + L + K V +I + E+ + F ++ L+ +Y PT+ Sbjct: 7 DQQKVLKLPKTSIKKIVQEVIHLENELCH---EVIIHFISDKKMRELHAQYFNDPSPTDC 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +SFP + +LG+I + E G + IHG LHL+GYD + Sbjct: 64 ISFPLDG--PEETHYRVLGEIFVCPETAVKYTEQHGGDPYTETALYTIHGLLHLMGYDDI 121 Query: 144 DDKDACVMEGLERSILEDL 162 D M E+ LE L Sbjct: 122 KKTDQKAMRAAEKKHLEHL 140 >gi|297708196|ref|XP_002830862.1| PREDICTED: putative metalloprotease C21orf57-like isoform 1 [Pongo abelii] gi|297708198|ref|XP_002830863.1| PREDICTED: putative metalloprotease C21orf57-like isoform 2 [Pongo abelii] Length = 167 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 8/118 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSFP D LGDI Sbjct: 33 QKFDLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHEHLKAGEFPQPDFPDDYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 L E I + +++ + L HG HLLG+ H + + M E+++L++LG Sbjct: 93 LGVEYIFHQCQE-NEDYNDVLTVTATHGLCHLLGFTHSTEAEWQQMFQKEKAVLDELG 149 >gi|308183263|ref|YP_003927390.1| putative metalloprotease [Helicobacter pylori PeCan4] gi|308065448|gb|ADO07340.1| putative metalloprotease [Helicobacter pylori PeCan4] Length = 140 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 60/141 (42%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F L+ K V + LV + +N + RG D T+VL Sbjct: 3 EIDNQTPLESDFL-----LLEKIANVLAPTQTIELVLVSDETMREINRDLRGCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP LG +V+ + + A LG E+ + L IHG LHLLGYDH Sbjct: 58 SFPLEAIP-----HTPLGSVVINMPLAQTNALKLGHSLEDEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 111 EKDKGEQRQKESELIKAFNLP 131 >gi|54607072|ref|NP_478061.1| rRNA maturation factor homolog isoform 1 [Homo sapiens] gi|47117865|sp|P58557|YBEY_HUMAN RecName: Full=rRNA maturation factor homolog gi|119629693|gb|EAX09288.1| chromosome 21 open reading frame 57, isoform CRA_a [Homo sapiens] gi|119629696|gb|EAX09291.1| chromosome 21 open reading frame 57, isoform CRA_a [Homo sapiens] Length = 167 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 8/118 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSFP D LGDI Sbjct: 33 QKFDLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHEHLKAGEFPQPDFPDDYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 L E I + +++ + L HG HLLG+ H + + M E+++L++LG Sbjct: 93 LGVEYIFHQCKE-NEDYNDVLTVTATHGLCHLLGFTHGTEAEWQQMFQKEKAVLDELG 149 >gi|320538438|ref|ZP_08038305.1| conserved hypothetical protein TIGR00043 [Treponema phagedenis F0421] gi|320144700|gb|EFW36449.1| conserved hypothetical protein TIGR00043 [Treponema phagedenis F0421] Length = 156 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 2/129 (1%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA--S 92 K S L+ ++ +LS+VF + I TLN YR ID PT+VLSF + Sbjct: 20 WLPKVESFLLKVLERMEIQNWDLSVVFCNDEFIHTLNKTYRHIDSPTDVLSFENGEKYFN 79 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 DG + ++ GDI+++ + ++ A + L L+IHG LHL G DH D+ M Sbjct: 80 EDGEARILAGDIIISLDSVKANAYAFHVSIDEELRRLLIHGVLHLFGMDHTDNSPEQEML 139 Query: 153 GLERSILED 161 L+ IL + Sbjct: 140 QLQEKILAE 148 >gi|118475619|ref|YP_891672.1| putative metalloprotease [Campylobacter fetus subsp. fetus 82-40] gi|145558830|sp|A0RN89|RRMF_CAMFF RecName: Full=Probable rRNA maturation factor gi|28974225|gb|AAO64226.1| hypothetical protein Cf0020 [Campylobacter fetus] gi|118414845|gb|ABK83265.1| conserved hypothetical protein [Campylobacter fetus subsp. fetus 82-40] Length = 134 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 7/112 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 E+ LVF + + +N + RG+DK T+VLSFP + +G IV+ ++ Sbjct: 21 KAEVELVFVSNEEMREINRDKRGMDKTTDVLSFPLTYVP-----HFPIGSIVINTDLASS 75 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A LG ++ + L HG LH+LG+DH +D M E SI+E +G+ Sbjct: 76 KALELGHSTDDEIALLFTHGLLHILGFDHENDD--GEMRRKEISIMEHMGLP 125 >gi|237751248|ref|ZP_04581728.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229372614|gb|EEO23005.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 200 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 10/144 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D I + K + +L + + + L+F DS ++ LN +Y D PT+V Sbjct: 54 DSIKKDLKLQESIYKYIESL-------DKQNLYIELIFVDSESMQELNKQYMAKDYPTDV 106 Query: 84 LSFPTAFASSDGCS-SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 LSFP + LG I++ + +A + L IH FLHLLG+DH Sbjct: 107 LSFPLEIQDIESSDMPQCLGSIIINIYEVCDKAALYKHNPYAEFSLLFIHAFLHLLGFDH 166 Query: 143 VDDKDACVMEGLERSILEDLGIND 166 D +E++I+E LG+ D Sbjct: 167 ECDNGEQ--RAVEQAIIESLGLPD 188 >gi|78778570|ref|YP_396682.1| hypothetical protein PMT9312_0184 [Prochlorococcus marinus str. MIT 9312] gi|123554741|sp|Q31CZ9|RRMF_PROM9 RecName: Full=Probable rRNA maturation factor gi|78712069|gb|ABB49246.1| Protein of unknown function UPF0054 [Prochlorococcus marinus str. MIT 9312] Length = 179 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 76/179 (42%), Gaps = 18/179 (10%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRT-----------LCEVVFAKAVSNLISKG---- 47 +K+ + ++L + + + + E VF ++ ++ K Sbjct: 1 MKEKIISEINLDLVFQCNDFSQFSNKLKDSKTKLIFESIFWEKVFLSWINTILKKEDYEL 60 Query: 48 --YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-AFASSDGCSSLMLGDI 104 Y ++ L L + I +LN ++ + PT+VLSFP + S + + LGDI Sbjct: 61 PYYIFEKKSFSLGLQIISNQEIASLNKKWMQKNGPTDVLSFPIISDESLNNLDQIELGDI 120 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 ++ E+ ++ ++ L HGFLHLLG++H ++ D M + ++ L Sbjct: 121 FISLEMALEQSYEYKHSIYREMIWLASHGFLHLLGWEHNNEHDLENMLNFQEYLITRLN 179 >gi|123967737|ref|YP_001008595.1| metal-dependent hydrolase [Prochlorococcus marinus str. AS9601] gi|145572764|sp|A2BNX7|RRMF_PROMS RecName: Full=Probable rRNA maturation factor gi|123197847|gb|ABM69488.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus str. AS9601] Length = 179 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 5/152 (3%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 + E+ W + + + Y + L L + I +LN Sbjct: 31 KTNLIFESIFWEK--VFLSWINTILKN--EDYELPNYIFDKKSFSLGLQIISNQEIASLN 86 Query: 72 FEYRGIDKPTNVLSFPT-AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 ++ + PT+VLSFP + S + + LGDI ++ E+ ++ ++ L Sbjct: 87 KKWMQKNGPTDVLSFPIISDESLNNLDHIELGDIFISLEMALEQSYEYKHSIYREMIWLA 146 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 HGFLHLLG++H ++ D M + ++ L Sbjct: 147 SHGFLHLLGWEHNNEHDLENMLNFQEYLITRL 178 >gi|298245008|ref|ZP_06968814.1| protein of unknown function UPF0054 [Ktedonobacter racemifer DSM 44963] gi|297552489|gb|EFH86354.1| protein of unknown function UPF0054 [Ktedonobacter racemifer DSM 44963] Length = 216 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 30/181 (16%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P ++L I +E+A I L V + VS +S + ++L+ TD I Sbjct: 36 PLIELYITIEDAQQSAAIEK-ALENVNLDEVVSQTLSAVNI--HEPIMVTLLVTDDEGIR 92 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASS---------------------------DGCSSLML 101 +N +YR IDK T+VLSFP + L Sbjct: 93 DMNKQYREIDKATDVLSFPLLNEPLVQAPAEQLWPVRESEAGAQESVPDFITPPETVQNL 152 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 GDIV+++ +E +A L++L+ HG LHL+GYD + M G+++ ++ Sbjct: 153 GDIVMSWPTLERQAQEAKHSTIYELLYLLSHGMLHLVGYDDHTEAGYQAMVGIQQRVMNT 212 Query: 162 L 162 L Sbjct: 213 L 213 >gi|237753148|ref|ZP_04583628.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] gi|229375415|gb|EEO25506.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] Length = 146 Score = 85.5 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 19/156 (12%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D+ +I + ++ + + L+F ++ +I+ Sbjct: 1 MIDID-------NQTKIKFDSSFLAFLDSIFLEILKDLGLQDK---QCELLFVENAKIQA 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN E+RGIDKPT+VLSFP F+ L+LG IV++ E A LG + + L Sbjct: 51 LNLEFRGIDKPTDVLSFPLEFS-------LLLGSIVISVEFASKIAQELGHSLNDEIALL 103 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 IHG LHLLG+DH D ER I+E G+ Sbjct: 104 FIHGVLHLLGFDHEVDNGEH--RERERKIVEKFGLP 137 >gi|167946144|ref|ZP_02533218.1| hypothetical protein Epers_06212 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 100 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 59 LVFTDSHRIETLN-FEYRGIDKPTNVLSFPTAFASSDGCS--SLMLGDIVLAYEIIEIEA 115 + D + +YRG D+PTNVLSFP +LGD+V+ ++ EA Sbjct: 2 IRIVDEAESQGTEXRDYRGKDRPTNVLSFPFETPPELPAEAAGNLLGDLVICAPVVAREA 61 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 GK +H +H+++HG LHL G DH +D +A +M Sbjct: 62 AAQGKSPISHWIHMVVHGVLHLQGLDHQNDAEAGIMR 98 >gi|116004463|ref|NP_001070588.1| rRNA maturation factor homolog [Bos taurus] gi|81673818|gb|AAI09796.1| Hypothetical protein MGC134244 [Bos taurus] gi|296490846|gb|DAA32959.1| hypothetical protein LOC768063 [Bos taurus] Length = 164 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 8/114 (7%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA-------SSDGCSSLMLGDIVLAYE 109 L +V D+ +I+ +N YR D PT+VLSFP D LGDI L E Sbjct: 37 LGVVCVDNRKIQQMNRIYREQDTPTDVLSFPFHENLKAGEIPQPDFPDDYNLGDIFLGVE 96 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 I + ++ + L HG HLLG+ H + + M E+ +L++L Sbjct: 97 FIFQQCKEDE-DYYDILTVTATHGLCHLLGFTHSTEAEWQKMYQKEKQVLQELN 149 >gi|297380337|gb|ADI35224.1| conserved hypothetical protein [Helicobacter pylori v225d] Length = 140 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 7/123 (5%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 L+ K V + LV + +N + RG D T+VLSFP LG Sbjct: 16 LLEKIANVLAPTQTIELVLVSDETMREINRDLRGCDYATDVLSFPLEAIP-----HTPLG 70 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +V+ + + A LG E + L IHG LHLLGYDH +KD E +++ Sbjct: 71 SVVINMPLAQTNAMKLGHSLEEEIALLFIHGVLHLLGYDH--EKDKGEQRQKESELIKAF 128 Query: 163 GIN 165 + Sbjct: 129 NLP 131 >gi|297181414|gb|ADI17603.1| predicted metal-dependent hydrolase [uncultured delta proteobacterium HF0130_19C20] Length = 157 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 72/147 (48%), Gaps = 12/147 (8%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 + E + N ++ + ++ +S++ T+ I+ LN ++ D PT++LS+ Sbjct: 14 INETRIRNILKNFLNSLFDSQKG---ISVLITNDVEIQKLNKQFLKKDYPTDILSWTYDL 70 Query: 91 ASSDGC--------SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 + G++V++ E + +A G +FE L+ L+ HG HL G+DH Sbjct: 71 EEEKKAGLESKESREENIAGELVVSAERVSKQAFENGWDFETELIRLLAHGCAHLAGWDH 130 Query: 143 VD-DKDACVMEGLERSILEDLGINDPY 168 + +K M LE +L+D+G+N+ Y Sbjct: 131 EESEKQERGMLDLEIQLLKDVGLNNIY 157 >gi|317180891|dbj|BAJ58677.1| putative metalloprotease [Helicobacter pylori F32] Length = 140 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F L+ K V + LV + +N ++RG D T+VL Sbjct: 3 EIDNQTPLESDFL-----LLEKIANVLAPTQIIELVLVSDETMREINRDFRGCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP LG +V+ + + A LG E+ + L IHG LHLLGYDH Sbjct: 58 SFPLEAIP-----HTPLGSVVINMPLAQENALKLGHRLEDEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 111 EKDKGEQRQKESELIKAFNLP 131 >gi|124515714|gb|EAY57223.1| conserved protein of unknown function [Leptospirillum rubarum] Length = 169 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 10/149 (6%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 + ++N + + TL + A + + +++ F ++ RI +N EY Sbjct: 3 VEIDNR--QKKFPVDTLALSLLANEAQKTLGEAQK------NVTITFVNNRRIRIVNREY 54 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 RG ++ T+VLSF + + G+I+++ E E +A E +V+LIIHG Sbjct: 55 RGKNRSTDVLSF-SYPSPPFPDIPFPDGEILISTEKAERQAREQNIPLETEIVNLIIHGL 113 Query: 135 LHLLGYDHVD-DKDACVMEGLERSILEDL 162 HL G+DH +DA M+ ER I + L Sbjct: 114 CHLAGHDHETGPEDALRMKHAERKIAKTL 142 >gi|149177587|ref|ZP_01856189.1| hypothetical protein PM8797T_00232 [Planctomyces maris DSM 8797] gi|148843567|gb|EDL57928.1| hypothetical protein PM8797T_00232 [Planctomyces maris DSM 8797] Length = 165 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 16/162 (9%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 QI ++N+ I E A+S L+ N E+SL D+ I LN + Sbjct: 8 QIEIQNSQTHLAID-----ETQLKTAISFLLQSEQV---NQAEISLAIVDNPTIRQLNQQ 59 Query: 74 YRGIDKPTNVLSF--------PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 Y D T+VLSF T G + G+++++ E+ + E Sbjct: 60 YLEHDYDTDVLSFLLDCDTAMDTNQVEFRGAGRQIEGEVIVSAEMAVAMSAEYQWPAEQE 119 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 L+ +IHG LHL GYD + +++ +M E+ I + I+ P Sbjct: 120 LLLYVIHGLLHLCGYDDLTEEELHIMRQREQQIFDHWQISIP 161 >gi|308063942|gb|ADO05829.1| putative metalloprotease [Helicobacter pylori Sat464] Length = 140 Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 59/141 (41%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F L+ K V + LV + +N + RG D T+VL Sbjct: 3 EIDNQTPLESDFL-----LLEKIANVLAPTQTIELVLVSDETMREINRDLRGCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP LG +V+ + + A LG E + L IHG LHLLGYDH Sbjct: 58 SFPLEAIP-----HTPLGSVVINMPLAQESALKLGHSLEEEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 111 EKDKGEQRQKESELIKTFNLP 131 >gi|78777269|ref|YP_393584.1| putative metalloprotease [Sulfurimonas denitrificans DSM 1251] gi|123550289|sp|Q30RN2|RRMF_SULDN RecName: Full=Probable rRNA maturation factor gi|78497809|gb|ABB44349.1| Protein of unknown function UPF0054 [Sulfurimonas denitrificans DSM 1251] Length = 139 Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 7/112 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 E+ L+ TD + +N +R IDK T+VLSFP S+++ + +E Sbjct: 26 NKEIELIVTDKDEMREINSAHRNIDKATDVLSFPYIEMPLSPLGSIVICSL-----HVEE 80 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ G + L IHG LHLLGYDH + D+ M E I+++ + Sbjct: 81 KSKEFGHTLNDEFALLFIHGLLHLLGYDH--EVDSGEMREEEARIIKEFNLP 130 >gi|45657953|ref|YP_002039.1| hypothetical protein LIC12105 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|62901441|sp|Q72QK8|RRMF_LEPIC RecName: Full=Probable rRNA maturation factor gi|45601194|gb|AAS70676.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 141 Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 15/130 (11%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA--------------SS 93 + ++ ELSL+ ++ +N RG DK T+VLSFP F Sbjct: 9 KELNDSECELSLLLVGDSDMKEINRLRRGKDKTTDVLSFPLEFDFSPLQKILPKNTSSDQ 68 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVME 152 + LG+IV++ + ++ +A +G ++ L++HGFLHLLGYDH DK+ +M+ Sbjct: 69 KMFPPVALGEIVISIDTLQKQAKEIGHSEKDEFYRLLVHGFLHLLGYDHERGDKEEHIMK 128 Query: 153 GLERSILEDL 162 E LE L Sbjct: 129 LKEDECLEIL 138 >gi|269115217|ref|YP_003302980.1| hypothetical protein MHO_4420 [Mycoplasma hominis] gi|268322842|emb|CAX37577.1| Conserved hypothetical protein [Mycoplasma hominis ATCC 23114] Length = 150 Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 3/142 (2%) Query: 27 HLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 ++ F K +++ SK F + + + ++F + +++ LN +R + T++L Sbjct: 7 KNQSFHRFNFMKDFLDILEESKIEFGAKKSLCVDVMFVTAKKMKKLNNLHRQKNYTTDIL 66 Query: 85 SFPTAF-ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 SFP + + LG I+++ I+ +A ++ HG HL G+DH+ Sbjct: 67 SFPLDSQEELNFLDEIELGQIIISPWKIKKQAKEFNHSLRREFCYIFAHGIAHLFGFDHI 126 Query: 144 DDKDACVMEGLERSILEDLGIN 165 +++A +M G +I+ L I Sbjct: 127 TEEEAKIMNGHVDNIMNKLNIK 148 >gi|332291816|ref|YP_004430425.1| protein of unknown function UPF0054 [Krokinobacter diaphorus 4H-3-7-5] gi|332169902|gb|AEE19157.1| protein of unknown function UPF0054 [Krokinobacter diaphorus 4H-3-7-5] Length = 135 Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 16/148 (10%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++ N E+ + + ++ + E++ +F D + LN Sbjct: 2 IEFNSTNDF---ELSNPEELLQWLTSVIES-------EQKQMGEINYIFCDDAYLHKLNV 51 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 EY D T+V+SF ++ GD+ ++ E +E A F++ L +++H Sbjct: 52 EYLNHDTLTDVISFDY------TSGDVISGDVYISVERVEDNAADFKTSFKDELSRVMVH 105 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILE 160 G LH GY D +A M E L Sbjct: 106 GLLHYCGYKDKSDDEAKEMRAKENLYLS 133 >gi|108563524|ref|YP_627840.1| putative metalloprotease [Helicobacter pylori HPAG1] gi|122386286|sp|Q1CSA6|RRMF_HELPH RecName: Full=Probable rRNA maturation factor gi|107837297|gb|ABF85166.1| hypothetical protein HPAG1_1099 [Helicobacter pylori HPAG1] Length = 140 Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 60/141 (42%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F L+ K V + LV + +N + RG D T+VL Sbjct: 3 EIDNQTPLESDFL-----LLEKIANVLAPTQIIELVLVSDETMREINRDLRGCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP LG +V+ + + A LG EN + L IHG LHLLGYDH Sbjct: 58 SFPLEAIP-----HTPLGSVVINAPLAQTNALKLGHSLENEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 111 EKDKGEQRQKESELIKAFNLP 131 >gi|225156450|ref|ZP_03724786.1| protein of unknown function UPF0054 [Opitutaceae bacterium TAV2] gi|224802958|gb|EEG21204.1| protein of unknown function UPF0054 [Opitutaceae bacterium TAV2] Length = 179 Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 6/110 (5%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 ELSL F + L+ ++ T+V++F G+I ++ + Sbjct: 47 PDGELSLAFLSDAALARLHADFLDDPTTTDVITF------EATPGMGSAGEICVSVDTAA 100 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 A G +F L I+HG+LHL GYD + M E+ + L Sbjct: 101 RYAREHGHDFAEELALYIVHGWLHLAGYDDLQPMKKRRMRAAEKRAIALL 150 >gi|217034240|ref|ZP_03439658.1| hypothetical protein HP9810_2g19 [Helicobacter pylori 98-10] gi|216943300|gb|EEC22762.1| hypothetical protein HP9810_2g19 [Helicobacter pylori 98-10] Length = 142 Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F L+ K V + LV + +N ++RG D T+VL Sbjct: 3 EIDNQTSLESDFL-----LLEKIANVLAPTQIIELVLVSDKTMREINRDFRGCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP S LG +V+ + + A LG E+ + L IHG LHLLGYDH Sbjct: 58 SFPLEAIS-----HTPLGSVVINMPLAQTNALKLGHSLEDEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 111 EKDKGEQRQKESELIKAFNLP 131 >gi|28493250|ref|NP_787411.1| hypothetical protein TWT283 [Tropheryma whipplei str. Twist] gi|28572638|ref|NP_789418.1| hypothetical protein TW489 [Tropheryma whipplei TW08/27] gi|46577441|sp|Q83GJ1|RRMF_TROWT RecName: Full=Probable rRNA maturation factor gi|46577442|sp|Q83HN7|RRMF_TROW8 RecName: Full=Probable rRNA maturation factor gi|28410770|emb|CAD67156.1| conserved hypothetical protein [Tropheryma whipplei TW08/27] gi|28476291|gb|AAO44380.1| unknown [Tropheryma whipplei str. Twist] Length = 171 Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 5/117 (4%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG---DIV 105 + L + F + + L ++ G+++ ++VLSFP + +SL+ G DIV Sbjct: 31 LFIDKGSYLGVSFITAAEMRDLKIKHFGVNEDSDVLSFPIDEIAPGSENSLVYGVLGDIV 90 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + E + +A FE+ + L++HGFLHLLG+DH D M L+ ++ED Sbjct: 91 VCPETVMRQAVR--HPFEHEIYLLVVHGFLHLLGFDHSDAPSKKEMFSLQAKLIEDF 145 >gi|24214384|ref|NP_711865.1| putative metal-dependent hydrolase [Leptospira interrogans serovar Lai str. 56601] gi|46577486|sp|Q8F5J7|RRMF_LEPIN RecName: Full=Probable rRNA maturation factor gi|24195321|gb|AAN48883.1| predicted metal-dependent hydrolase [Leptospira interrogans serovar Lai str. 56601] Length = 141 Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 15/130 (11%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA--------------SS 93 + ++ ELSL+ ++ +N RG DK T+VLSFP F Sbjct: 9 KELNDSECELSLLLVGDSDMKEINRLRRGKDKTTDVLSFPLEFDFSPLQKILPKNTSSDQ 68 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVME 152 + LG+IV++ + ++ +A +G ++ L++HGFLHLLGYDH DK+ +M+ Sbjct: 69 KMFPPIALGEIVISIDTLQKQAKEIGHSEKDEFYRLLVHGFLHLLGYDHERGDKEEHIMK 128 Query: 153 GLERSILEDL 162 E LE L Sbjct: 129 LKEDECLEIL 138 >gi|147899075|ref|NP_001087112.1| ybeY metallopeptidase (putative) [Xenopus laevis] gi|50604012|gb|AAH78000.1| MGC82413 protein [Xenopus laevis] Length = 165 Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 7/121 (5%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG-------CSSLMLG 102 +K +L ++ ++ RI+ +N YRG D T+VLSFP + LG Sbjct: 30 LKVKNFDLGIICVNNARIQHINRVYRGQDSVTDVLSFPFHEDLNPSLLPIPATPDEYNLG 89 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DI L I + +++ + L +HG HLLG+ H + + M E IL ++ Sbjct: 90 DIYLGVAFIYEQCQKTQEDYRSILTITAVHGLCHLLGHKHNNPEKWKQMFEKETEILNEI 149 Query: 163 G 163 Sbjct: 150 N 150 >gi|330893093|gb|EGH25754.1| metal-binding heat shock protein [Pseudomonas syringae pv. mori str. 301020] Length = 114 Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 14/128 (10%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQIA E + DE R CE+ + + EL++ D + Sbjct: 1 MLELDLQIASETSA-PDEARFRLWCEMGLRQ------------RSADSELTIRLVDENEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R + TNVLSFP D +LGD+V+ ++ EA GK + H Sbjct: 48 RELNHTWRHKNYATNVLSFPAD-VPDDMLDIPLLGDLVICVPVVNREAAEQGKSVDAHWA 106 Query: 128 HLIIHGFL 135 H++IHG L Sbjct: 107 HMVIHGCL 114 >gi|84496851|ref|ZP_00995705.1| hypothetical protein JNB_04990 [Janibacter sp. HTCC2649] gi|84383619|gb|EAP99500.1| hypothetical protein JNB_04990 [Janibacter sp. HTCC2649] Length = 155 Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E DE+ L V G +L L D +ETL Sbjct: 1 MSIDVLNETDFALDELELVACARYVM----------GEMKVHPQADLCLRLVDEAAMETL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ + PT+V+SFP D +LGDIVL + + +A G E L Sbjct: 51 HVQWMDLPGPTDVMSFPMDELRPGSDDDDPEEGVLGDIVLCPSVAQKQAAEAGHATEEEL 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L HG LHLLGYDH + ++ M L+R +L Sbjct: 111 LLLTTHGILHLLGYDHAEPEEEREMFELQRQLL 143 >gi|149369359|ref|ZP_01889211.1| hypothetical protein SCB49_06027 [unidentified eubacterium SCB49] gi|149356786|gb|EDM45341.1| hypothetical protein SCB49_06027 [unidentified eubacterium SCB49] Length = 138 Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 9/140 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 E A +S ++ + E+S +F D + LN ++ D T+V Sbjct: 6 SETDFNLTDTEKIASWISEIVRNEA---HELGEVSYIFCDDAYLHKLNVQFLDHDTLTDV 62 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +SF + + + G+I ++ E + A FE+ L +IIHG LH GY Sbjct: 63 ISF------DNSLGTQVHGEIYISVERVRENAKEFSDSFEDELHRVIIHGLLHFCGYKDK 116 Query: 144 DDKDACVMEGLERSILEDLG 163 D++A +M E L L Sbjct: 117 TDEEAAMMRSKENEALALLK 136 >gi|322378540|ref|ZP_08052988.1| putative metalloprotease [Helicobacter suis HS1] gi|322379746|ref|ZP_08054056.1| putative metalloprotease [Helicobacter suis HS5] gi|321147817|gb|EFX42407.1| putative metalloprotease [Helicobacter suis HS5] gi|321149054|gb|EFX43506.1| putative metalloprotease [Helicobacter suis HS1] Length = 157 Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 7/109 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + L+ D ++ LN E+RG+DK T+VLSFP +LG +V+ E+ IEA Sbjct: 46 VELLLVDVEKMRELNLEFRGLDKSTDVLSFPLE-----IPGQKLLGSVVINVELATIEAK 100 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G + L +HG LHLLG+DH +KD E ++ + Sbjct: 101 QRGHSLFAEITLLFVHGCLHLLGFDH--EKDRGEQREKEEEVIRVFNLP 147 >gi|294155405|ref|YP_003559789.1| conserved hypothetical metalloprotease [Mycoplasma crocodyli MP145] gi|291600021|gb|ADE19517.1| conserved hypothetical metalloprotease [Mycoplasma crocodyli MP145] Length = 158 Score = 84.3 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 8/159 (5%) Query: 8 LPRLDLQIAVENALWGDE-IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 + LD I + A + + + V + F + +++ + F D+ + Sbjct: 1 MNNLDKNIEINYANHRKYGFKFKKEYQEILKNLVKH------FNIKKDIQVDVTFVDNKK 54 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFAS-SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 I+ LN YR D T++LSF + + LG++V++ + +E ++ + Sbjct: 55 IKELNKSYRNKDYVTDILSFDFGKIDFNSKIPFIHLGELVISSQKVEEQSQEFNHSLKRE 114 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +L HG +HL+GYDH + + M L +I L I Sbjct: 115 YCYLFAHGLIHLMGYDHELEDERIEMNKLVDTIFSPLNI 153 >gi|254526914|ref|ZP_05138966.1| hypothetical protein P9202_1567 [Prochlorococcus marinus str. MIT 9202] gi|221538338|gb|EEE40791.1| hypothetical protein P9202_1567 [Prochlorococcus marinus str. MIT 9202] Length = 179 Score = 84.3 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 5/149 (3%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 + E+ W + ++ K L Y ++ L L + I +LN ++ Sbjct: 34 LIFESIFWKK--IFLSWINIILKKKDYEL--PNYIFEKKSFSLGLQIISNQEIASLNMKW 89 Query: 75 RGIDKPTNVLSFPT-AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 + PT+VLSFP + S + + LGDI +++E+ ++ ++ L HG Sbjct: 90 MQKNGPTDVLSFPIISDESLNNLDHIELGDIFISFEMALEQSYEYKHSIYREMIWLASHG 149 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDL 162 FLHLLG++H ++ D M + ++ L Sbjct: 150 FLHLLGWEHNNENDLENMLNFQEYLITRL 178 >gi|15645774|ref|NP_207951.1| putative metalloprotease [Helicobacter pylori 26695] gi|6647979|sp|O25775|RRMF_HELPY RecName: Full=Probable rRNA maturation factor gi|2314318|gb|AAD08206.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 140 Score = 84.3 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 44/141 (31%), Positives = 60/141 (42%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F L+ K V + LV I +N + RG D T+VL Sbjct: 3 EIDNQTPLESDFL-----LLEKIANVLAPTQIIELVLVSDETIREINKDLRGCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP LG +V+ + + A LG EN + L IHG LHLLGYDH Sbjct: 58 SFPLEAIP-----HTPLGSVVINAPLAQTNALKLGHSLENEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 111 EKDKGEQRQKESELIKAFNLP 131 >gi|220702590|pdb|1TVI|A Chain A, Solution Structure Of Tm1509 From Thermotoga Maritima: Vt1, A Nesgc Target Protein Length = 172 Score = 84.3 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 8/123 (6%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + + + + V ++++ I+ LN ++RG D+PT+VL+FP Sbjct: 39 LKEKLEEIVKKEIGDVHVNVILVSEDEIKELNQQFRGQDRPTDVLTFPLMEED------- 91 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSI 158 + G+I + I+E A FE L+ ++IHG LHL GYDH +DK++ M ++ Sbjct: 92 VYGEIYVCPLIVEENAREFNNTFEKELLEVVIHGILHLAGYDHEFEDKNSKEMFEKQKKY 151 Query: 159 LED 161 +E+ Sbjct: 152 VEE 154 >gi|313672928|ref|YP_004051039.1| hypothetical protein Calni_0965 [Calditerrivibrio nitroreducens DSM 19672] gi|312939684|gb|ADR18876.1| protein of unknown function UPF0054 [Calditerrivibrio nitroreducens DSM 19672] Length = 149 Score = 84.3 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 L + N E+SLV TD ++ +N YR ID T+VLSFP + +LG Sbjct: 28 LKHEKISFPFNTAEISLVITDDEEMKEINRLYRKIDSTTDVLSFPINDGKDIKSN--ILG 85 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILED 161 DIV++Y+ + ++ E + L IHG LHLLGYDH + D M ++ + Sbjct: 86 DIVISYDKAKSQSVENECTIEEEIAFLFIHGLLHLLGYDHDSSEVDEKEMFEMQEDFFQK 145 Query: 162 L 162 Sbjct: 146 F 146 >gi|317152962|ref|YP_004121010.1| hypothetical protein Daes_1250 [Desulfovibrio aespoeensis Aspo-2] gi|316943213|gb|ADU62264.1| protein of unknown function UPF0054 [Desulfovibrio aespoeensis Aspo-2] Length = 162 Score = 84.3 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 44/151 (29%), Positives = 63/151 (41%), Gaps = 21/151 (13%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 D++I E L D R V + +L +G L L D I LN Sbjct: 4 DIRILRETRLEPDFPLSRQELVRVVETILDSLGLEG-------AALELTLVDDREIARLN 56 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSS--------------LMLGDIVLAYEIIEIEANV 117 E+ G PTN+LSFP S LG++ L+ + + EA++ Sbjct: 57 REFMGCPGPTNILSFPAFERSGPDSGPDVDPDSGPDSGTMAEYLGELALSVDTLAREAHL 116 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 G+ HL L+ HG LHL G+DH ++ DA Sbjct: 117 YGQPPRVHLARLLAHGILHLAGHDHGEEMDA 147 >gi|330836438|ref|YP_004411079.1| metalloprotease ybeY [Spirochaeta coccoides DSM 17374] gi|329748341|gb|AEC01697.1| metalloprotease ybeY [Spirochaeta coccoides DSM 17374] Length = 153 Score = 83.9 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 7/142 (4%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E+ + E V +S ++S VE+S F I LN E+R D+ T++L Sbjct: 13 EMFKESYPEDVILDRISGILSDLGL---ENVEMSCSFVSDEEIRRLNAEWRDRDESTDIL 69 Query: 85 SFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 SF S+DG MLGD+V++ E ++ + + L L++HG LHLLG Sbjct: 70 SFVQEDGEAMPSADGNEWRMLGDLVISPESLKRNSEYFTVSLDEELHRLLVHGMLHLLGD 129 Query: 141 DHVDDKDACVMEGLERSILEDL 162 DH + M + +L L Sbjct: 130 DHATNDPQEPMLIRQEEMLRRL 151 >gi|154148178|ref|YP_001406320.1| putative metalloprotease [Campylobacter hominis ATCC BAA-381] gi|153804187|gb|ABS51194.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381] Length = 138 Score = 83.9 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 8/135 (5%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 +CE F + ++++ + LVF +S ++ LN RGIDK T+VLSFP F Sbjct: 3 ICETEFPQILNDINKFLG-----SYNVELVFVNSDEMKELNLTERGIDKTTDVLSFPL-F 56 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 + D +G +V+ ++ + +AN LG + + L +HGFLH+LG+DH D Sbjct: 57 SKIDNYGDFPIGSVVINLDLAKRKANELGHNVNDEIALLFMHGFLHILGFDHETDN--GE 114 Query: 151 MEGLERSILEDLGIN 165 M ER I+E+ + Sbjct: 115 MREKEREIIENFKLP 129 >gi|86609356|ref|YP_478118.1| hypothetical protein CYB_1900 [Synechococcus sp. JA-2-3B'a(2-13)] gi|123501846|sp|Q2JKD4|RRMF_SYNJB RecName: Full=Probable rRNA maturation factor gi|86557898|gb|ABD02855.1| conserved hypothetical protein TIGR00043 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 163 Score = 83.9 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 52/121 (42%), Gaps = 7/121 (5%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + E + + + ELSL T I LN E+R +D+PT+VL+F Sbjct: 16 PIEEATWRHWFEIWLKELGVQ--EPCELSLCLTSDEHIRQLNREFRHLDEPTDVLAFAAQ 73 Query: 90 F-----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 D +LGDIV++ +A G L L HG LHLLG+DH D Sbjct: 74 EMLAPFGIQDITGVRLLGDIVISVPTARAQAKAQGHRLSQELAWLASHGLLHLLGWDHPD 133 Query: 145 D 145 + Sbjct: 134 E 134 >gi|217032555|ref|ZP_03438045.1| hypothetical protein HPB128_172g18 [Helicobacter pylori B128] gi|298735834|ref|YP_003728359.1| Predicted metal-dependent hydrolase [Helicobacter pylori B8] gi|216945760|gb|EEC24384.1| hypothetical protein HPB128_172g18 [Helicobacter pylori B128] gi|298355023|emb|CBI65895.1| Predicted metal-dependent hydrolase [Helicobacter pylori B8] Length = 140 Score = 83.9 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 59/141 (41%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F L+ K V + LV + +N + R D T+VL Sbjct: 3 EIDNQTPLESDFL-----LLEKIADVLAPTQIIELVLVSDETMREINRDLRNCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP LG +V+ + + A LG EN + L IHG LHLLGYDH Sbjct: 58 SFPLEAIP-----HTPLGSVVINAPLAQENALKLGHSLENEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E ++E + Sbjct: 111 EKDKGEQRQKESELIEAFNLP 131 >gi|317178539|dbj|BAJ56327.1| putative metalloprotease [Helicobacter pylori F30] Length = 142 Score = 83.9 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F L+ K V + LV + +N ++RG D T+VL Sbjct: 3 EIDKQTSLESDFL-----LLEKIANVLAPTQIIELVLVSDKTMREINRDFRGCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP LG +V+ + + A LG E+ + L IHG LHLLGYDH Sbjct: 58 SFPLEAIP-----HTPLGSVVINMPLAQTNALKLGHRLEDEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 111 EKDKGEQRQKESELIKAFNLP 131 >gi|160902312|ref|YP_001567893.1| hypothetical protein Pmob_0846 [Petrotoga mobilis SJ95] gi|189040617|sp|A9BHG1|RRMF_PETMO RecName: Full=Probable rRNA maturation factor gi|160359956|gb|ABX31570.1| protein of unknown function UPF0054 [Petrotoga mobilis SJ95] Length = 143 Score = 83.9 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 17/153 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + + L EI+ + + ++ ++ + + EL+++ TD I Sbjct: 1 MKINVINQQEL--REINSKKIKDIAKKVLLNEV-------GKGNFELNILITDDKSITEF 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG PT+VLSF + ++GDIV++ E IE +A G FE +++ Sbjct: 52 NK-YRGKSTPTDVLSFSYGLSEP------VIGDIVISVESIEKQAPDFGNSFEEEFYYIL 104 Query: 131 IHGFLHLLGYDHVD-DKDACVMEGLERSILEDL 162 IHG LH++GYDH + ++DA M ++ L Sbjct: 105 IHGLLHIVGYDHENSEEDAKKMFEVQDQYFHQL 137 >gi|72074176|ref|XP_793533.1| PREDICTED: similar to C21orf57 isoform A protein [Strongylocentrotus purpuratus] gi|115973189|ref|XP_001180108.1| PREDICTED: similar to C21orf57 isoform A protein [Strongylocentrotus purpuratus] Length = 182 Score = 83.9 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 6/143 (4%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 + + K +L + ++ ++S++ + I +N YR D+PT+VLSF Sbjct: 7 NFQKSVAFNLDKVKGDLKALRRILRVERFDVSVICVEDKDIRQMNKIYRATDEPTDVLSF 66 Query: 87 PTAFASSDGCSSLM------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 P G LGD+ L IE + + ++ L +I HG HL+GY Sbjct: 67 PAHENLKPGRLPDPWSDLADLGDMFLGMGYIERDCTKHNADIDDVLPVIITHGLCHLIGY 126 Query: 141 DHVDDKDACVMEGLERSILEDLG 163 DH + +M E ILE Sbjct: 127 DHKTQEQWKMMHDRELQILEQFK 149 >gi|307637831|gb|ADN80281.1| metal-dependent hydrolase [Helicobacter pylori 908] Length = 141 Score = 83.9 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 7/123 (5%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 L+ K + LV + +N + R D T+VLSFP LG Sbjct: 16 LLEKIASFLAPTQIIELVLVSDETMREINRDLRDCDYATDVLSFPLEAIP-----HTPLG 70 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +V+ + + A LG E+ + L IHG LHLLGYDH DK E +++ Sbjct: 71 SVVINAPLAQENALKLGHSLEDEIALLFIHGVLHLLGYDHEKDKSEQ--RQKEGELIKAF 128 Query: 163 GIN 165 + Sbjct: 129 DLP 131 >gi|313886905|ref|ZP_07820608.1| translation metalloprotein YbeY [Porphyromonas asaccharolytica PR426713P-I] gi|312923602|gb|EFR34408.1| translation metalloprotein YbeY [Porphyromonas asaccharolytica PR426713P-I] Length = 175 Score = 83.9 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 2/107 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E++ +TD I N + D T+V++FP + GDI+++ + + A Sbjct: 38 EINFQYTDDEGILRANRAFLQHDYYTDVITFPRESEQEG--DDAIYGDILISIDTVATNA 95 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 LG F+ L ++IHG LHLLG D D + +M E L L Sbjct: 96 QELGVPFQQELYRVMIHGILHLLGIDDQTDSERELMHMAEDRALMQL 142 >gi|126695540|ref|YP_001090426.1| metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9301] gi|166227511|sp|A3PAQ0|RRMF_PROM0 RecName: Full=Probable rRNA maturation factor gi|126542583|gb|ABO16825.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9301] Length = 179 Score = 83.9 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 5/149 (3%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 + E+ W + + K + Y ++ L L + I +LN ++ Sbjct: 34 LIFESIFWEK--VFLSWINTILKK--EDYELPNYIFEKKSFSLGLQIISNQEIASLNKKW 89 Query: 75 RGIDKPTNVLSFPT-AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 + PT+VLSFP + S + + LGDI ++ E+ ++ ++ L HG Sbjct: 90 MQKNGPTDVLSFPIISDESLNNLDHIELGDIFISLEMALEQSYEYKNSIYREMIWLASHG 149 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDL 162 FLHLLG++H ++ D M + +++ L Sbjct: 150 FLHLLGWEHNNEHDLENMLNFQEYLIKKL 178 >gi|149199105|ref|ZP_01876145.1| hypothetical protein LNTAR_24389 [Lentisphaera araneosa HTCC2155] gi|149137894|gb|EDM26307.1| hypothetical protein LNTAR_24389 [Lentisphaera araneosa HTCC2155] Length = 160 Score = 83.5 bits (205), Expect = 8e-15, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 68/155 (43%), Gaps = 9/155 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I++++ TL E + ++ + + + + L++ FTD IE +N Sbjct: 1 MNISIQSD-----TDKYTLAETKHIEDIALYLCDHWGLSKKHCSLNISFTDDAGIEPVNV 55 Query: 73 EYRGIDKPTNVLSFPT----AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 ++ + T+V+SF +D +LG+++++ E + +A F + + Sbjct: 56 QFLQHEGATDVISFDYLDDYEEEFADEDDPFVLGELLISLETAQSQAQTYDSSFNDEALL 115 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 + HG LHL G+D + D M E ++ + Sbjct: 116 YVAHGILHLCGFDDHQEDDIKAMRDAEAQSMKLIK 150 >gi|315606861|ref|ZP_07881870.1| possible metal dependent hydrolase [Prevotella buccae ATCC 33574] gi|315251526|gb|EFU31506.1| possible metal dependent hydrolase [Prevotella buccae ATCC 33574] Length = 139 Score = 83.5 bits (205), Expect = 8e-15, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 9/139 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + + + + + + + + E+ +F D ++ +N EY G D T++ Sbjct: 7 DGVKMPNIRKRTVSAWIKAVAAT---FGRKVGEIGYMFVDDEKMLEVNNEYLGHDYYTDI 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F + GD+V++ + + A GK++ L +IIHG LHL G + Sbjct: 64 ITFDYDE------GDTISGDLVISLDTVRTNAEKFGKDYNEELHRVIIHGILHLCGINDK 117 Query: 144 DDKDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 118 GPGEREIMEAHENKALALL 136 >gi|189183988|ref|YP_001937773.1| putative metalloprotease [Orientia tsutsugamushi str. Ikeda] gi|189180759|dbj|BAG40539.1| hypothetical protein OTT_1081 [Orientia tsutsugamushi str. Ikeda] Length = 167 Score = 83.5 bits (205), Expect = 8e-15, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 78/167 (46%), Gaps = 7/167 (4%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 ++ + ++++W + + K E++++ T+ H ++ Sbjct: 1 MKIKAALIRQHSIWRNHKEINLCYVKKIIKTTLYHNIFAKLQSVQQAEVAILLTNDHEMQ 60 Query: 69 TLNFEYRGIDKPTNVLSFPTAFAS-------SDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 LNF +R I+KPTNVLSFP + + LGDI Y I EA K Sbjct: 61 NLNFTHRKINKPTNVLSFPDQVLDWQNLSTLDIQDNYIYLGDIAFGYNTIAKEAVEQQKT 120 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 F NH HL+IH LHLLG+DH D +A +ME LE ++L I PY Sbjct: 121 FINHFTHLLIHAILHLLGFDHQHDSEAIIMEELEVNLLAKFSIASPY 167 >gi|288925424|ref|ZP_06419358.1| metalloprotease [Prevotella buccae D17] gi|288337895|gb|EFC76247.1| metalloprotease [Prevotella buccae D17] Length = 139 Score = 83.5 bits (205), Expect = 8e-15, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 9/139 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + + + + + + + + E+ +F D +I +N EY G D T++ Sbjct: 7 DGVKMPNIRKRTVSAWIKAVAAT---FGRKVGEIGYMFVDDEKILEVNNEYLGHDYYTDI 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F + GD+V++ + + A GK++ L +IIHG LHL G + Sbjct: 64 ITFDYDE------GDTISGDLVISLDTVRTNAEKFGKDYNEELHRVIIHGILHLCGINDK 117 Query: 144 DDKDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 118 GPGEREIMEAHENKALALL 136 >gi|152990533|ref|YP_001356255.1| hypothetical protein NIS_0786 [Nitratiruptor sp. SB155-2] gi|172048729|sp|A6Q339|RRMF_NITSB RecName: Full=Probable rRNA maturation factor gi|151422394|dbj|BAF69898.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 144 Score = 83.5 bits (205), Expect = 8e-15, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 7/109 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + L+ D R+ TLN YR IDK T+VLSFP + LG IV+ + + A Sbjct: 34 VELMIVDDERMRTLNKTYRDIDKTTDVLSFPMQEIPN-----APLGSIVINADKVLHTAK 88 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LG ++ L IHG LHLLGYDH D M +E ++ + + Sbjct: 89 ELGHSAKDEFALLYIHGLLHLLGYDHESDN--GEMRAMEEKLIIEYNLP 135 >gi|290985008|ref|XP_002675218.1| predicted protein [Naegleria gruberi] gi|284088813|gb|EFC42474.1| predicted protein [Naegleria gruberi] Length = 231 Score = 83.5 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 58/163 (35%), Gaps = 27/163 (16%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 C K + F ++++F + I +LN + R PT++LS+ Sbjct: 52 DKLKDCIFDSIKIRNLTRDILKFTPHKDYGVTVLFCGNKYITSLNEKDRKKKGPTDILSY 111 Query: 87 PTAFASSDGC---------------------------SSLMLGDIVLAYEIIEIEANVLG 119 P D LGD+V++ I Sbjct: 112 PVYSPDLDHNFALMEKDAAFNDDLAKLLADEHKILMEEEKFLGDMVISQPYIVDYCKENN 171 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 ++H+ L+ HG LHL+GYDH D D +M+ E IL L Sbjct: 172 ISLDHHMALLLTHGILHLMGYDHETDSDYAIMKEKEDEILSGL 214 >gi|332300776|ref|YP_004442697.1| metalloprotease ybeY [Porphyromonas asaccharolytica DSM 20707] gi|332177839|gb|AEE13529.1| metalloprotease ybeY [Porphyromonas asaccharolytica DSM 20707] Length = 175 Score = 83.5 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 2/107 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E++ +TD I N + D T+V++FP ++ GDI+++ + + A Sbjct: 38 EINFQYTDDEGILRANRAFLQHDYYTDVITFPRESEQEG--DDVIYGDILISIDTVATNA 95 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 LG F+ L ++IHG LHLLG D D + +M E L L Sbjct: 96 QELGVPFQQELYRVMIHGILHLLGIDDQTDSERELMHMAEDRALMQL 142 >gi|261885819|ref|ZP_06009858.1| putative metalloprotease [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 134 Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 7/112 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 E+ LVF + + +N + RG+DK T+VLSFP + +G IV+ ++ Sbjct: 21 KAEVELVFVSNEEMREINRDKRGMDKTTDVLSFPLTYVP-----HFPIGSIVINTDLASS 75 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A LG ++ + L HG LH+LG+DH +D M E S++E +G+ Sbjct: 76 KALELGHSTDDEIALLFTHGLLHILGFDHENDD--GEMRRKEISMMEHMGLP 125 >gi|94970564|ref|YP_592612.1| hypothetical protein Acid345_3537 [Candidatus Koribacter versatilis Ellin345] gi|123381297|sp|Q1IKR2|RRMF_ACIBL RecName: Full=Probable rRNA maturation factor gi|94552614|gb|ABF42538.1| protein of unknown function UPF0054 [Candidatus Koribacter versatilis Ellin345] Length = 152 Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 9/140 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 I L+ V +++S +++ ++ ++ T S + LN +R DK T+VLS Sbjct: 2 IILKKKLAGVSEQSLSLFLTRARKAAGVRGQVQVLVTSSDELRGLNRRFRRKDKATDVLS 61 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 FP GDI ++ +I A LG + L LI+HG LHL G+DH + Sbjct: 62 FPAIVDGE-------AGDIAISSDIASEYAYELGHSLDEELRILILHGVLHLAGHDH--E 112 Query: 146 KDACVMEGLERSILEDLGIN 165 +D ME LE + + L + Sbjct: 113 RDKGEMEALESELRDKLKLP 132 >gi|308184901|ref|YP_003929034.1| putative metalloprotease [Helicobacter pylori SJM180] gi|308060821|gb|ADO02717.1| putative metalloprotease [Helicobacter pylori SJM180] Length = 140 Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F L+ K V + LV + +N + R D T+VL Sbjct: 3 EIDNQTPLESDFL-----LLEKIANVLAPTQIIELVLVSDETMREINRDLRNCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP LG +V+ + + A LG E+ + L IHG LHLLGYDH Sbjct: 58 SFPLEAIP-----HTPLGSVVINAPLAQENALKLGHSLEDEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 111 EKDRGEQRQKEGELIKAFSLP 131 >gi|219109735|ref|XP_002176621.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411156|gb|EEC51084.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 192 Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 48/180 (26%), Positives = 70/180 (38%), Gaps = 38/180 (21%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 I VEN I L L + +L+ ++SL+ D + N E Sbjct: 17 DIYVENNQESLNIDLERL--KATIAKIRDLM------GYRTYDVSLLLVDDQEMRETNEE 68 Query: 74 YRGIDKPTNVLSFPTAFASSDG---------CSSLMLGDIVLAYEIIEIEANVLGK---- 120 RG+D+PT+VLSFP A G +GD+++ + K Sbjct: 69 TRGMDEPTDVLSFPFTEAIEPGVLTPPVVDIGDYYNMGDMMIDVPYVIRACQDDAKYSHS 128 Query: 121 -----------------EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 + E + L++HG LHL+GYDH+DD D +M E IL LG Sbjct: 129 DLEDEDRGVSAAMAMVMDPEERINMLLVHGMLHLVGYDHIDDDDYQLMVAKEEEILRLLG 188 >gi|325996428|gb|ADZ51833.1| metal-dependent hydrolase [Helicobacter pylori 2018] gi|325998017|gb|ADZ50225.1| putative metalloprotease [Helicobacter pylori 2017] Length = 141 Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 7/123 (5%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 L+ K + LV + +N + R D T+VLSFP LG Sbjct: 16 LLEKIASFLAPTQIIELVLVSDETMREINRDLRDCDYATDVLSFPLEAIP-----HTPLG 70 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +V+ + + A LG E+ + L IHG LHLLGYDH +KD E +++ Sbjct: 71 SVVINAPLAQENALKLGHSLEDEIALLFIHGVLHLLGYDH--EKDKGEQRQKEGELIKAF 128 Query: 163 GIN 165 + Sbjct: 129 DLP 131 >gi|158520794|ref|YP_001528664.1| hypothetical protein Dole_0777 [Desulfococcus oleovorans Hxd3] gi|158509620|gb|ABW66587.1| protein of unknown function UPF0054 [Desulfococcus oleovorans Hxd3] Length = 97 Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N Y G PTNV++FP + + +LGD+V++ + EA +G E L Sbjct: 1 MNQVYLGRTGPTNVIAFPMQEGAFADLTPGLLGDVVISADTALREARSMGVSLEARFTEL 60 Query: 130 IIHGFLHLLGYDHV-DDKDACVMEGLERSILEDL 162 +IHG LHL GYDH D +A ME R +L+ L Sbjct: 61 LIHGILHLSGYDHEQSDTEAEKMEAKTRELLKML 94 >gi|33860742|ref|NP_892303.1| hypothetical protein PMM0182 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|46577388|sp|Q7V3A1|RRMF_PROMP RecName: Full=Probable rRNA maturation factor gi|33633684|emb|CAE18641.1| conserved hypothetical protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 180 Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 66/151 (43%), Gaps = 6/151 (3%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 I E+ W + + LC + + + + + LSL + + I ++N + Sbjct: 33 NIIFESGFWEEVL----LCWIKIILDEKDTSFPNFILYKKSFSLSLQIINDNEISSINQK 88 Query: 74 YRGIDKPTNVLSFPT--AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 + T+VLSFP ++ + + LGD+ ++ E ++ + ++ L Sbjct: 89 WMNKSGSTDVLSFPIISDEDTTKDLNFIELGDLFISLETAFKQSLEFNHSIKKEMLWLAS 148 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 HG LHLLG++H DD + M + ++ L Sbjct: 149 HGLLHLLGWEHNDDYELDNMLNFQEYLISKL 179 >gi|317011357|gb|ADU85104.1| putative metalloprotease [Helicobacter pylori SouthAfrica7] Length = 140 Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 7/123 (5%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 L+ K I + LV + + +N + R D T+VLSFP LG Sbjct: 16 LLEKIADFLSPIQVVELVLVSNETMRGINRDLRNCDYATDVLSFPLEAIP-----HTPLG 70 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +V+ + + A LG E+ + L IHG LHLLGYDH +KD E +++ Sbjct: 71 SVVINVPLAQANALKLGHSLESEIALLFIHGMLHLLGYDH--EKDQGEQRQKESELIKAF 128 Query: 163 GIN 165 + Sbjct: 129 NLP 131 >gi|297287364|ref|XP_002803146.1| PREDICTED: putative metalloprotease C21orf57-like [Macaca mulatta] Length = 167 Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 8/118 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YRG + PT+VLSFP + LGDI Sbjct: 33 QKFDLGIICVDNKNIQHINRIYRGRNVPTDVLSFPFHEHLKAGEFPLPEFPDDYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 L E I + ++ + L HG HLLG+ H + + M E+++L++LG Sbjct: 93 LGVEYIFHQCKEDE-DYNDVLTVTATHGLCHLLGFTHSTEAEWQQMFQKEKAVLDELG 149 >gi|310779143|ref|YP_003967476.1| protein of unknown function UPF0054 [Ilyobacter polytropus DSM 2926] gi|309748466|gb|ADO83128.1| protein of unknown function UPF0054 [Ilyobacter polytropus DSM 2926] Length = 154 Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 5/156 (3%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 L L+I E + ++I + K + ++ + Y + V +S++ TD+ I+ Sbjct: 1 MELVLEIGNETEGYEEKIDISN-----VEKYIKGVLEEEYPEAKKPVYISMLLTDNENIQ 55 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +N +YRG D PT+V+SF + LGDIV++ E +E +A G F+ + Sbjct: 56 IVNRDYRGKDTPTDVISFAYHETEFEIGPYDTLGDIVISLERVEEQAEDYGHNFQREFYY 115 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ HG LHLLGYDH++D+D +M E IL+ G Sbjct: 116 VLTHGLLHLLGYDHIEDEDKSIMREKEEEILKKHGY 151 >gi|332673960|gb|AEE70777.1| probable metalloprotease [Helicobacter pylori 83] Length = 142 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 59/141 (41%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F L+ K V + LV + +N + RG D T+VL Sbjct: 3 EIDNQTPLESDFL-----LLEKIANVLAPTQIIELVLVSDETMREINRDLRGCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP LG +V+ + + A LG E+ + L IHG LHLLGYDH Sbjct: 58 SFPLEAIP-----HTPLGSVVINMPLAQTNALKLGHSLEDEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E ++ + Sbjct: 111 EKDKGEQRQKESEFIKAFNLP 131 >gi|317009770|gb|ADU80350.1| putative metalloprotease [Helicobacter pylori India7] Length = 140 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 60/141 (42%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F L+ K V + LV + +N + RG D T+VL Sbjct: 3 EIDNQTPLESDFL-----LLEKIANVLAPTQIIELVLVSDETMREINRDLRGCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP LG +V+ + + A LG E+ + L IHG LHLLGYDH Sbjct: 58 SFPLEVVP-----HTPLGSVVINAPLAQTNALKLGHRLEDEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 111 EKDKGEQRQKESELIKAFNLP 131 >gi|308062438|gb|ADO04326.1| putative metalloprotease [Helicobacter pylori Cuz20] Length = 140 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F L+ K V + LV + +N + RG D T+VL Sbjct: 3 EIDNQTPLESDFL-----LLEKIANVLAPTQTIELVLVSDETMREINRDLRGCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP LG +V+ + + A L E + L IHG LHLLGYDH Sbjct: 58 SFPLEAIP-----HTPLGSVVINMPLAQENALKLEHSLEEEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 111 EKDKGEQRQKESELIKAFNLP 131 >gi|325109207|ref|YP_004270275.1| metalloprotease ybeY [Planctomyces brasiliensis DSM 5305] gi|324969475|gb|ADY60253.1| metalloprotease ybeY [Planctomyces brasiliensis DSM 5305] Length = 162 Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 55/140 (39%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 I + L F+ S + E+ ++ D+ I +N + D PT+V++ Sbjct: 12 IDQQQLLTFDFSHLQQLAASVLAAHQITQAEIHVLLVDNPTIHAMNVAHLEHDFPTDVIT 71 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 FP + +IV++ E+ A G E ++H LHL G+D + + Sbjct: 72 FPLNDTDQQPPDYPLEAEIVISTEMAAEMAGEAGWSAEEEATLYLVHSLLHLCGFDDLTE 131 Query: 146 KDACVMEGLERSILEDLGIN 165 M E +L LG+ Sbjct: 132 DAQREMRQRELEMLHHLGMK 151 >gi|15828849|ref|NP_326209.1| hypothetical protein MYPU_3780 [Mycoplasma pulmonis UAB CTIP] gi|46577539|sp|Q98QI3|RRMF_MYCPU RecName: Full=Probable rRNA maturation factor gi|14089792|emb|CAC13551.1| conserved hypothetical protein [Mycoplasma pulmonis] Length = 149 Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 46 KGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-DGCSSLMLGDI 104 + F + + + L+ TD+ + N YR +DK T+VLSFP D + LG I Sbjct: 28 QEKFNFKKRISVDLLITDNKEVRENNLLYRNVDKETDVLSFPFGDPDFFDHLDFIPLGSI 87 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++++E I +A + +L H LHLLGYDH ++ + +M + I+E L I Sbjct: 88 IISHEKIVAQALEFNHSKKREFCYLFTHSLLHLLGYDHKEEDEEKIMNQYTKEIVEKLNI 147 >gi|315587050|gb|ADU41431.1| probable metalloprotease [Helicobacter pylori 35A] Length = 142 Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F L+ K + LV + +N + RG D T+VL Sbjct: 3 EIDNQTPLESDFL-----LLEKIANALAPTQIIELVLVSDKTMREINRDLRGCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP LG +V+ + + A LG E+ + L IHG LHLLGYDH Sbjct: 58 SFPLEAIP-----HTPLGSVVINMPLAQTNALKLGHSLEDEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 111 EKDKGEQRQKESELIKAFNLP 131 >gi|283955565|ref|ZP_06373060.1| hypothetical protein C1336_000020094 [Campylobacter jejuni subsp. jejuni 1336] gi|283793026|gb|EFC31800.1| hypothetical protein C1336_000020094 [Campylobacter jejuni subsp. jejuni 1336] Length = 134 Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 8/129 (6%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 + L S F+ VEL VF DS ++ +N E R DK T+VLSFP + Sbjct: 5 NEKCDFLESIASFLSPKDVEL--VFVDSKEMQEINLEQRKQDKTTDVLSFPLE----NID 58 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 SL LG +V+ ++ + +A LG +E + L IH LHLLG+DH +D M E+ Sbjct: 59 ESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGFDHENDN--GEMREKEK 116 Query: 157 SILEDLGIN 165 ++E + Sbjct: 117 ELIEYFNLP 125 >gi|15644257|ref|NP_229309.1| hypothetical protein TM1509 [Thermotoga maritima MSB8] gi|6686214|sp|Q9X1J7|RRMF_THEMA RecName: Full=Probable rRNA maturation factor gi|4982075|gb|AAD36576.1|AE001799_8 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 150 Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 8/123 (6%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + + + + V ++++ I+ LN ++RG D+PT+VL+FP Sbjct: 17 LKEKLEEIVKKEIGDVHVNVILVSEDEIKELNQQFRGQDRPTDVLTFPLMEED------- 69 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSI 158 + G+I + I+E A FE L+ ++IHG LHL GYDH +DK++ M ++ Sbjct: 70 VYGEIYVCPLIVEENAREFNNTFEKELLEVVIHGILHLAGYDHEFEDKNSKEMFEKQKKY 129 Query: 159 LED 161 +E+ Sbjct: 130 VEE 132 >gi|317014546|gb|ADU81982.1| metal-binding heat shock protein [Helicobacter pylori Gambia94/24] Length = 141 Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E+ F L+ K + LV + +N + R D T+VL Sbjct: 3 EIDNQTPLELDFL-----LLEKIANFLAPTQIIELVLVSDETMREINRDLRDCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP LG +V+ + + A LG E+ + L IHG LHLLGYDH Sbjct: 58 SFPLEAIP-----HTPLGSVVINAPLAQENALKLGHSLEDEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 111 EKDKGEQRQKEGELIKAFDLP 131 >gi|222099958|ref|YP_002534526.1| Putative metalloprotease [Thermotoga neapolitana DSM 4359] gi|254807298|sp|B9K877|RRMF_THENN RecName: Full=Probable rRNA maturation factor gi|221572348|gb|ACM23160.1| Putative metalloprotease [Thermotoga neapolitana DSM 4359] Length = 149 Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 K++S + + + V +++ +I+ +N E+RG D PT+VL+FP Sbjct: 13 ILKSLSEKLDEIVKKEIGNVNTNVILVSKDQIKEMNREFRGEDFPTDVLTFPLFEE---- 68 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGL 154 + G+I + E++E A FE L+ ++IHG LHL GYDH +DK+A M Sbjct: 69 ----VYGEIYICPEVVEENAKEYNNTFEKELIEVVIHGILHLAGYDHEFEDKNAKEMFEK 124 Query: 155 E 155 + Sbjct: 125 Q 125 >gi|210135319|ref|YP_002301758.1| putative metalloprotease [Helicobacter pylori P12] gi|226701640|sp|B6JN00|RRMF_HELP2 RecName: Full=Probable rRNA maturation factor gi|210133287|gb|ACJ08278.1| metalloprotease [Helicobacter pylori P12] Length = 140 Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 60/141 (42%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F L+ K V + L+ + +N + RG D T+VL Sbjct: 3 EIDNQTPLESDFL-----LLEKIANVLAPTQIIELILVSGETMREINRDLRGCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP LG +V+ + + A LG EN + L IHG LHLLGYDH Sbjct: 58 SFPLEAIP-----HTPLGSVVINVPLAQENALKLGHSLENEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 111 EKDKGEQRQKEGELIKAFNLP 131 >gi|86153617|ref|ZP_01071820.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842578|gb|EAQ59790.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni HB93-13] Length = 134 Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 8/129 (6%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 + L S F+ VEL VF DS ++ +N E R DK T+VLSFP + Sbjct: 5 DEKCDFLESIASFLSPKDVEL--VFVDSKEMQEINLEQRKQDKTTDVLSFPLE----NID 58 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 SL LG +V+ ++ + +A LG +E + L IH LHLLG+DH +D M E+ Sbjct: 59 ESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGFDHENDN--GEMREKEK 116 Query: 157 SILEDLGIN 165 ++E + Sbjct: 117 ELIEYFNLP 125 >gi|256828058|ref|YP_003156786.1| hypothetical protein Dbac_0243 [Desulfomicrobium baculatum DSM 4028] gi|256577234|gb|ACU88370.1| protein of unknown function UPF0054 [Desulfomicrobium baculatum DSM 4028] Length = 146 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 8/96 (8%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 + +LSL D + LN +Y G PTNVLSFP LGD+VL+ E + Sbjct: 35 DEWQLSLRIVDDREMAELNGQYMGCLGPTNVLSFPGDED--------WLGDLVLSAETLV 86 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 E + ++ + V L+ HG LHL+G+DH + +A Sbjct: 87 RECRLYNQDPHEYTVRLLAHGLLHLMGHDHGPEMEA 122 >gi|74001576|ref|XP_848242.1| PREDICTED: similar to UPF0054 protein C21orf57 homolog isoform 1 [Canis familiaris] Length = 164 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 8/116 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA-------SSDGCSSLMLGDIVL 106 +L L+ D+ ++ LN YRG D+PT+VLSFP LGDIVL Sbjct: 34 DFDLGLLCVDNEGMQRLNRAYRGDDRPTDVLSFPFHENVKAGELPRPRSRDDYNLGDIVL 93 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 E + ++ + L HG HLLG+ H + + M E+ +LE+L Sbjct: 94 GVEYVFQRCRGDA-DYYDALTVTAAHGLCHLLGFTHSTEAEWRKMYQKEKQVLEEL 148 >gi|121613427|ref|YP_999845.1| putative metalloprotease [Campylobacter jejuni subsp. jejuni 81-176] gi|167004816|ref|ZP_02270574.1| hypothetical protein Cjejjejuni_00700 [Campylobacter jejuni subsp. jejuni 81-176] gi|145572759|sp|A1VXK4|RRMF_CAMJJ RecName: Full=Probable rRNA maturation factor gi|87250280|gb|EAQ73238.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni 81-176] Length = 134 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 8/129 (6%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 + L S F+ VEL VF DS ++ +N E R DK T+VLSFP + Sbjct: 5 DEKCDFLESIASFLGPKDVEL--VFVDSKEMQEINLEQRKQDKTTDVLSFPLE----NID 58 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 SL LG +V+ ++ + +A LG +E + L IH LHLLG+DH +D M E+ Sbjct: 59 ESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGFDHENDN--GEMREKEK 116 Query: 157 SILEDLGIN 165 ++E + Sbjct: 117 ELIEYFNLP 125 >gi|116515199|ref|YP_802828.1| YbeY [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285405|sp|Q057G4|RRMF_BUCCC RecName: Full=Probable rRNA maturation factor gi|116257053|gb|ABJ90735.1| predicted metal-dependent hydrolase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 156 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 15/170 (8%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M++KK NL ++D+Q + F K + K +E+++ Sbjct: 1 MNIKK-NLMKIDIQ-------------NVCKKNIFFPKKKYFFLWLKNIFKNKKIEITIR 46 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEIIEIEANVLG 119 D ++ LN +Y+ + TNVLSF + + L GDI+L I EAN+L Sbjct: 47 IVDMLEMKFLNKKYKKKNSLTNVLSFQSPDSIKIKHRFLNYIGDIILCAPYINKEANILK 106 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 K+ H+ IH LHLL Y H D K M+ E I++ LG N+PY Sbjct: 107 KKKIELWAHMTIHSTLHLLHYSHKDSKSKKNMQKTEIYIMKKLGYNNPYN 156 >gi|326532710|dbj|BAJ89200.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 526 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 47/149 (31%), Positives = 68/149 (45%), Gaps = 16/149 (10%) Query: 10 RLDLQIAVENALWGDEI------HLRTLCEVVFAKAVSNLISKGYFVKE---------NI 54 L +QI +E AL D + LRT A NL + Y ++ + Sbjct: 90 ELSVQIGIEEALPDDPLILSIAETLRTDAGKAMKLAFHNLGNSEYKTRDPCISNVDEYDS 149 Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VE+SL+ D I LN E+R D T+VLS + L LGD+V++ E + Sbjct: 150 VEVSLLLCDDDFIRKLNKEWRDEDHATDVLSM-SQHIPGLQIPILQLGDLVISVETARRQ 208 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 A G + + L++HG LHLLG+DH Sbjct: 209 AEERGHALLDEIRILMVHGLLHLLGFDHE 237 >gi|42526751|ref|NP_971849.1| putative metalloprotease [Treponema denticola ATCC 35405] gi|59799128|sp|Q73NB3|RRMF_TREDE RecName: Full=Probable rRNA maturation factor gi|41817066|gb|AAS11760.1| conserved hypothetical protein TIGR00043 [Treponema denticola ATCC 35405] gi|325473810|gb|EGC76998.1| metalloprotease [Treponema denticola F0402] Length = 155 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 38/113 (33%), Positives = 53/113 (46%), Gaps = 2/113 (1%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS--LMLGDIVLAYEI 110 ++SL+F D I+ LN +YR ID PT+VLSF D M GDIV++ + Sbjct: 36 KNWDISLLFCDDAFIQNLNKQYRDIDSPTDVLSFEQGDEYFDEAGETRFMAGDIVISLDS 95 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 + A + L LI+HG LHL G DH D+ M + +L Sbjct: 96 LSFNAEEFNVDINEELKRLIVHGILHLNGMDHSDNSPEQEMLKFQEELLMQYK 148 >gi|228470093|ref|ZP_04055002.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] gi|228308231|gb|EEK17086.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] Length = 150 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 2/107 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E++ +TD I N + D T+V++FP + GDI+++ + + A Sbjct: 14 EINFQYTDDEGILKANRAFLQHDYYTDVITFPRESEQEG--DDAIYGDILISIDTVATNA 71 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 LG F+ L ++IHG LHLLG D + +M E L L Sbjct: 72 QELGVPFKQELYRVMIHGILHLLGIDDQTQSERELMRMAEDRALMQL 118 >gi|47459183|ref|YP_016045.1| putative metal binding protein [Mycoplasma mobile 163K] gi|59799113|sp|Q6KHU4|RRMF_MYCMO RecName: Full=Probable rRNA maturation factor gi|47458512|gb|AAT27834.1| putative metal binding protein [Mycoplasma mobile 163K] Length = 152 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-ASSDGCSSLMLGDIVL 106 +F ++ +EL L D+ I+ ++ +Y DK T+VLSFP+ + +G+I L Sbjct: 31 FFKEKLPLELDLNIVDNILIKKISKQYYKKDKETDVLSFPSELANMKNALGFFHIGEIFL 90 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 YE + ++A + +L HG +HL GYDHV + +A M + SI++ L I Sbjct: 91 NYEKVILQAKEYNHSLKREFCYLFTHGIIHLYGYDHVKENEAKEMNAIVESIMQKLNIK 149 >gi|188527944|ref|YP_001910631.1| putative metalloprotease [Helicobacter pylori Shi470] gi|238691942|sp|B2UUR9|RRMF_HELPS RecName: Full=Probable rRNA maturation factor gi|188144184|gb|ACD48601.1| putative metalloprotease [Helicobacter pylori Shi470] Length = 140 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F + K V + LV + +N + RG D T+VL Sbjct: 3 EIDNQTPLESDFLS-----LEKIANVLAPTQTIELVLVSDETMREINRDSRGCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP LG +V+ + + A LG E+ + L IHG LHLLGYDH Sbjct: 58 SFPLEAIP-----HTPLGSVVINMPLAQESALKLGHRLEDEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 111 EKDKGEQRQKESELIKTFNLP 131 >gi|157414434|ref|YP_001481690.1| putative metalloprotease [Campylobacter jejuni subsp. jejuni 81116] gi|157385398|gb|ABV51713.1| hypothetical protein C8J_0114 [Campylobacter jejuni subsp. jejuni 81116] gi|307747078|gb|ADN90348.1| Putative metalloprotease [Campylobacter jejuni subsp. jejuni M1] gi|315931515|gb|EFV10482.1| uncharacterized protein family UPF0054 family protein [Campylobacter jejuni subsp. jejuni 327] Length = 134 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 8/129 (6%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 + L S F+ VEL VF DS ++ +N E R DK T+VLSFP + Sbjct: 5 DEKCDFLESIASFLSPKDVEL--VFVDSKEMQEINLEQRKQDKTTDVLSFPLE----NID 58 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 SL LG +V+ ++ + +A LG +E + L IH LHLLG+DH +D M E+ Sbjct: 59 ESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGFDHENDN--GEMREKEK 116 Query: 157 SILEDLGIN 165 ++E + Sbjct: 117 ELIEHFNLP 125 >gi|206602218|gb|EDZ38700.1| Conserved protein of unknown function [Leptospirillum sp. Group II '5-way CG'] Length = 169 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 + ++ +++ F ++ RI +N EYRG ++ T+VLSF + + G Sbjct: 23 ANEAQKTLGQSKKNVTITFVNNRRIRIVNREYRGKNRSTDVLSF-SYPSPPFPDIPFPDG 81 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILED 161 +I+++ E E +A E +++LIIHG HL G+DH +D+ M+ +ER I Sbjct: 82 EILISTEKAERQAREQNISLETEIINLIIHGLCHLAGHDHETGPEDSLRMKSVERKIANA 141 Query: 162 L 162 L Sbjct: 142 L 142 >gi|317486292|ref|ZP_07945124.1| hypothetical protein HMPREF0179_02482 [Bilophila wadsworthia 3_1_6] gi|316922462|gb|EFV43716.1| hypothetical protein HMPREF0179_02482 [Bilophila wadsworthia 3_1_6] Length = 169 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 8/129 (6%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 C +A+S ++ EL LV + N Y G PTNVLSFP Sbjct: 35 PFCRAELHRALSAMLRAAG---SGPAELDLVLVRDAGMADYNLRYMGCHGPTNVLSFPID 91 Query: 90 F---ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 D + LG +V + + + E + G++ E H + L+ HG HL+GYDH + Sbjct: 92 EQIAGPEDEDVPVQLGSLVFSVDTLHRETLLYGQDPEEHCLRLLAHGLGHLVGYDHGPEM 151 Query: 147 DA--CVMEG 153 D M Sbjct: 152 DELCSEMLS 160 >gi|225629632|ref|ZP_03787634.1| conserved hypothetical protein [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591515|gb|EEH12553.1| conserved hypothetical protein [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 97 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 40/97 (41%), Positives = 58/97 (59%), Gaps = 4/97 (4%) Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN ++R +DKPTNVLSFP S++ LGDI ++ + I+ E++ H+ H Sbjct: 1 QLNLKFREMDKPTNVLSFPYEQWSNESD----LGDIAISIDSIKRESHEYYIPILAHIAH 56 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +++HG HLLGYDH + +M+ LER IL LG N Sbjct: 57 MLVHGLRHLLGYDHPKKDEEIIMKNLEREILASLGYN 93 >gi|304383689|ref|ZP_07366148.1| possible metal dependent hydrolase [Prevotella marshii DSM 16973] gi|304335213|gb|EFM01484.1| possible metal dependent hydrolase [Prevotella marshii DSM 16973] Length = 140 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 9/138 (6%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 D I + + + + +I+ + ++ +F + ++I +N ++ D T+ Sbjct: 8 SDGIEMPNIRKRDTTAWIRAVINAYG---KRAGDIGYMFVNDNKILEINRQFLQHDYYTD 64 Query: 83 VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 V++F D + + GDIV++ + + A + GK + L +IIHG LHL G + Sbjct: 65 VITF------DDCDGNTINGDIVISLDTVRSNAKLYGKPYGEELHRVIIHGILHLCGLND 118 Query: 143 VDDKDACVMEGLERSILE 160 + +ME E L Sbjct: 119 KGPGERELMEAAEDRALA 136 >gi|15612152|ref|NP_223804.1| putative metalloprotease [Helicobacter pylori J99] gi|11387377|sp|Q9ZK54|RRMF_HELPJ RecName: Full=Probable rRNA maturation factor gi|4155684|gb|AAD06669.1| putative [Helicobacter pylori J99] Length = 141 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F L+ K V + + LV + +N + R D T+VL Sbjct: 3 EIDNQTPLESDFL-----LLEKIADVLASTQIIELVLVSDETMREINRDLRDCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP LG +V+ + + A LG E+ + L IHG LHLLGYDH Sbjct: 58 SFPLEAIP-----HTPLGSVVINAPLAQENALKLGHSLEDEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 111 EKDKGEQRQKEGELIKAFDLP 131 >gi|187250487|ref|YP_001874969.1| hydrolase family protein [Elusimicrobium minutum Pei191] gi|259645655|sp|B2KAT6|RRMF_ELUMP RecName: Full=Probable rRNA maturation factor gi|186970647|gb|ACC97632.1| Hydrolase family protein [Elusimicrobium minutum Pei191] Length = 143 Score = 82.0 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 9/152 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + + + +L + + A+ S E++L+F D I + Sbjct: 1 MIINVFYKTKV-PSHFRKTSLFKAGVSAALGKFAS-------KKGEVNLIFVDGKEIHKI 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+ D T+V+SF F G L GDI + Y++ + A++ G+ ++ Sbjct: 53 NKEFLNHDYKTDVISFNYPF-PQKGGEGLPFGDIFVCYDVAKENASLYGQGVLKEMLTYA 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +HG LHL G D K+ M+ I+ + Sbjct: 112 VHGALHLAGMDDATPKERSAMDDETGRIILKI 143 >gi|296273646|ref|YP_003656277.1| hypothetical protein Arnit_2116 [Arcobacter nitrofigilis DSM 7299] gi|296097820|gb|ADG93770.1| protein of unknown function UPF0054 [Arcobacter nitrofigilis DSM 7299] Length = 139 Score = 82.0 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 6/111 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ L+ + I+TLN E+R IDK T+VLSFP + + LG IV++ + +E +A Sbjct: 28 DIELILVYNDEIQTLNKEHRNIDKATDVLSFPLEYDMPNMP----LGSIVISVDFVEDKA 83 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 F + L L IHG LHLLGYDH DK E +++ + + Sbjct: 84 KEYNHSFLDELTLLFIHGMLHLLGYDHEVDKGEH--RKKEEELIKKYNLPN 132 >gi|196234338|ref|ZP_03133167.1| protein of unknown function UPF0054 [Chthoniobacter flavus Ellin428] gi|196221605|gb|EDY16146.1| protein of unknown function UPF0054 [Chthoniobacter flavus Ellin428] Length = 146 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 15/151 (9%) Query: 11 LDLQIAVENALWGDEIH-LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + +Q+ + LR L + + + + G F + E+ + IE Sbjct: 1 MSIQVYNRQRAVRLRLPWLRKLAPLALERCLEHSAD-GRFALRQLEEVEVAIVTDRVIED 59 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 ++ + T+V++F G+IV++ E A + L Sbjct: 60 VHLRFLKTPGATDVITF-------------EYGEIVISAETAAAYARQYKHDVNRELGLY 106 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 IIHG LHL GYD + DA +M ++ ILE Sbjct: 107 IIHGLLHLNGYDDLTPGDAELMHRTQQDILE 137 >gi|227538918|ref|ZP_03968967.1| possible metal dependent hydrolase [Sphingobacterium spiritivorum ATCC 33300] gi|227241121|gb|EEI91136.1| possible metal dependent hydrolase [Sphingobacterium spiritivorum ATCC 33300] Length = 142 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 13/152 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++ E+ + + + ++ I F + + EL+ +F+ + Sbjct: 1 MKNINFFAED------TDFKPKEKQKIRQWIAETIKSEGF--KRVGELNFIFSSDAYLLE 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N +Y D T++++F ++ + GDI ++ E I+ A + L + Sbjct: 53 INKQYLNHDTFTDIVTFDSSEEED-----TIAGDIFISIERIQDNAEKFKVAERDELHRV 107 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 +IHG LHL GY +D M E L Sbjct: 108 VIHGVLHLCGYHDKKAEDKKRMTEKEDEYLSK 139 >gi|188591271|ref|YP_001795871.1| unkown domain/ metalloprotease fusion protein [Cupriavidus taiwanensis LMG 19424] gi|170938165|emb|CAP63151.1| putative metal-dependent hydrolase, COG0319; putative diacylglycerol kinase [Cupriavidus taiwanensis LMG 19424] Length = 251 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 48/118 (40%), Positives = 61/118 (51%), Gaps = 4/118 (3%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 L++ F TLN YRG D TNVL+F A D + GDIVL ++E Sbjct: 132 DAALTIRFVGEEEGRTLNRTYRGKDYATNVLTFAYAEREDD----PVTGDIVLCCPVVEA 187 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA K E H HL++HG LH GY+H DD +A ME +E L+ LG DPY + Sbjct: 188 EARAQRKPLEAHYAHLVVHGVLHAQGYEHEDDAEAEEMEAIETETLQALGYADPYRAE 245 >gi|282858165|ref|ZP_06267360.1| conserved hypothetical protein [Pyramidobacter piscolens W5455] gi|282584087|gb|EFB89460.1| conserved hypothetical protein [Pyramidobacter piscolens W5455] Length = 190 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 5/109 (4%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA-----SSDGCSSLMLGDIVLAYE 109 V++SL F D R+ +N EYR PT+VLSFP L+LGDIV+ Sbjct: 61 VQISLQFLDETRMAEVNSEYRQTHAPTDVLSFPLFEKEGRFVPDAQLPPLLLGDIVVCPA 120 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +I A E+ L ++ HG LHLL +DH + M ++ Sbjct: 121 VIRKNAVERRVSEESELALVVFHGILHLLAWDHDTPEKQERMWSVQEHF 169 >gi|207091765|ref|ZP_03239552.1| putative metalloprotease [Helicobacter pylori HPKX_438_AG0C1] Length = 140 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 59/141 (41%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F L+ K V + LV I +N + RG D T+VL Sbjct: 3 EIDNQTPLESDFL-----LLEKIANVLAPTQTIELVLVSGETIREINRDLRGCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP LG +V+ + + A LG E + L IHG LHLLGYDH Sbjct: 58 SFPLEAIP-----HTPLGSVVINAPLAQTNALKLGHRLEEEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 111 EKDKGEQRQKESELIKAFNLP 131 >gi|153952235|ref|YP_001397375.1| putative metalloprotease [Campylobacter jejuni subsp. doylei 269.97] gi|152939681|gb|ABS44422.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. doylei 269.97] Length = 135 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 8/129 (6%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 + L S F+ VEL VF DS ++ +N E R DK T+VLSFP + Sbjct: 5 DEKCDFLESIASFLGPKDVEL--VFVDSKEMQEINLEQRKQDKTTDVLSFPLE----NID 58 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 SL LG +V+ ++ + +A LG +E + L IH LHLLG+DH +D M E+ Sbjct: 59 ESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGFDHENDN--GEMREKEK 116 Query: 157 SILEDLGIN 165 ++E + Sbjct: 117 ELIEHFNLP 125 >gi|293363549|ref|ZP_06610305.1| metalloprotein, YbeY family [Mycoplasma alligatoris A21JP2] gi|292552898|gb|EFF41652.1| metalloprotein, YbeY family [Mycoplasma alligatoris A21JP2] Length = 158 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 3/134 (2%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 + F K ++NL K +F + V + + F ++ ++ LN+++RG D PT++LSF + Sbjct: 22 FKNEFEKILTNL--KTFFSIDKPVMVDVCFVNNDQMRKLNWKHRGKDYPTDILSFGFEDS 79 Query: 92 -SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 ++ L LG++V++ + ++ +A + +L HG +HL+GYDH + + Sbjct: 80 LINEQLPFLHLGELVISVDKVKEQALEFNHSEKREYCYLFTHGLVHLMGYDHELENERIH 139 Query: 151 MEGLERSILEDLGI 164 M + I L I Sbjct: 140 MNNMVEEIFSPLNI 153 >gi|300770444|ref|ZP_07080323.1| possible metal dependent hydrolase [Sphingobacterium spiritivorum ATCC 33861] gi|300762920|gb|EFK59737.1| possible metal dependent hydrolase [Sphingobacterium spiritivorum ATCC 33861] Length = 142 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 61/152 (40%), Gaps = 13/152 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++ E+ + + + +++ I F + + EL+ +F+ + Sbjct: 1 MKNINFFAED------TDFKPKEKQKIRQWIADTIKSEGF--KRVGELNFIFSSDAYLLE 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N +Y D T++++F ++ + GDI ++ E I+ A + L + Sbjct: 53 INKQYLNHDTFTDIVTFDSSEEED-----TIAGDIFISIERIQDNAEKFKVAERDELHRV 107 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 +IHG LHL GY +D M E L Sbjct: 108 VIHGVLHLCGYHDKKAEDKKRMTEKEDEYLSK 139 >gi|282880546|ref|ZP_06289253.1| metalloprotein, YbeY/ UPF0054family [Prevotella timonensis CRIS 5C-B1] gi|281305649|gb|EFA97702.1| metalloprotein, YbeY/ UPF0054family [Prevotella timonensis CRIS 5C-B1] Length = 137 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 9/137 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + + + + + + + I E+ +F D +I +N EY G D T+V Sbjct: 7 DGVKMPNIKKRETSAWIKAVAATYG---RKIGEVGYMFVDDKKILEVNNEYLGHDYYTDV 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F + GDIV++ + + A + GK +E L +IIHG LHL G + Sbjct: 64 ITFDYDE------GDTVNGDIVISLDTVRTNAELFGKTYEEELHRVIIHGILHLCGINDK 117 Query: 144 DDKDACVMEGLERSILE 160 + ME E L Sbjct: 118 GPGEREQMEAAENKALA 134 >gi|317182412|dbj|BAJ60196.1| putative metalloprotease [Helicobacter pylori F57] Length = 143 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 60/141 (42%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F L+ K V + LV + +N + RG D T+VL Sbjct: 6 EIDNQTPLESDFL-----LLEKIANVLAPTQIIELVLVSDETMREINRDLRGCDYATDVL 60 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP LG +V+ + + A LG E+ + L IHG LHLLGYDH Sbjct: 61 SFPLEAIP-----HTPLGSVVINMPLAQTNALKLGHRLEDEIALLFIHGVLHLLGYDH-- 113 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 114 EKDKGEQRQKESELIKAFNLP 134 >gi|255322579|ref|ZP_05363724.1| conserved hypothetical protein [Campylobacter showae RM3277] gi|255300487|gb|EET79759.1| conserved hypothetical protein [Campylobacter showae RM3277] Length = 152 Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 7/110 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ L F D+ ++ +N RGI + T+VLSFP LG IV+ E++ +A Sbjct: 37 EVELSFVDAEEMKEINVRQRGIYETTDVLSFPLEM-----HLHAPLGCIVINTELVAAKA 91 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LG ++ L HG LH+LG+DH DA M E ++E + Sbjct: 92 AELGHSEDDETALLFTHGLLHVLGFDHES--DAGEMRAKECEVIEKFSLP 139 >gi|300176925|emb|CBK25494.2| unnamed protein product [Blastocystis hominis] Length = 166 Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 7/134 (5%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA----- 89 + ++I + V+L++ + S +I LN YR ID PT++LSFPT Sbjct: 2 ILFHNCQSVIKFKKLLTAQTVDLTISYITSPQIRELNRVYRNIDSPTDILSFPTHTFITN 61 Query: 90 --FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + S+ + LGDI +A + +++ + H L HG HLLG+DHV D+D Sbjct: 62 PGYLPSEKNTIRSLGDIYIATDYVDLYCKENKIDRFEHFNVLYAHGISHLLGFDHVKDED 121 Query: 148 ACVMEGLERSILED 161 M E+ +L++ Sbjct: 122 YIKMSAFEKKLLKE 135 >gi|317504317|ref|ZP_07962304.1| metal dependent hydrolase [Prevotella salivae DSM 15606] gi|315664568|gb|EFV04248.1| metal dependent hydrolase [Prevotella salivae DSM 15606] Length = 162 Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 76/162 (46%), Gaps = 13/162 (8%) Query: 2 SVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVF 61 ++K+ + + ++ I D + + L + + + + + + + ++ +F Sbjct: 8 KIRKIRINKFNVMITYNT----DGVSMPKLKKRIINRWIKQVAATYG---RKVGDIGYMF 60 Query: 62 TDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 D +I +N EY G D T++++F ++ GD+V++ + ++ A + GKE Sbjct: 61 VDDAKILQVNNEYLGHDYYTDIITFDYDEDD------IVSGDLVISIDTVKSNAELFGKE 114 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +E+ L +IIHG LHL G + + +ME E L L Sbjct: 115 YEDELHRVIIHGILHLCGINDKGPGEREIMEANENKALAILK 156 >gi|332519443|ref|ZP_08395910.1| protein of unknown function UPF0054 [Lacinutrix algicola 5H-3-7-4] gi|332045291|gb|EGI81484.1| protein of unknown function UPF0054 [Lacinutrix algicola 5H-3-7-4] Length = 136 Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 9/139 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E + + E + +S++I + ++E E++ VF D + LN E+ D T+++ Sbjct: 7 ENNFKLPNEAKISTWISSVILQENCIEE---EINYVFCDDEYLHKLNVEFLNHDTLTDII 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SF + + GDI ++ E +E A FE L +++HG LH GY Sbjct: 64 SFDYSVGKNLQ------GDIFISTERVEDNAKDFNVSFETELQRVLVHGILHYCGYKDKS 117 Query: 145 DKDACVMEGLERSILEDLG 163 D +A +M E L L Sbjct: 118 DSEAKLMREKENFYLNLLK 136 >gi|194226355|ref|XP_001916890.1| PREDICTED: similar to Putative metalloprotease C21orf57 [Equus caballus] Length = 164 Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 8/117 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA-------SSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSFP D LGDI Sbjct: 33 QKFDLGIICVDNKNIQHINRIYREKNIPTDVLSFPFHENLKAGEIPQPDFPDDYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L E I + +++ + L HG HLLG+ H + + M E+ +LE+L Sbjct: 93 LGVEYIFQQCKE-NEDYYDILTVTATHGLCHLLGFTHSTEAEWQKMYQKEKQVLEEL 148 >gi|226227119|ref|YP_002761225.1| hypothetical protein GAU_1713 [Gemmatimonas aurantiaca T-27] gi|226090310|dbj|BAH38755.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 167 Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 6/108 (5%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 LS+ F S + TLN ++ G PT+V++F A ++GDI + ++ +A Sbjct: 56 LSITFVTSRAMATLNRQHLGHTGPTDVITFALGNAPDG----TVIGDIYICPDVARRQAR 111 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV--MEGLERSILEDL 162 G L L++HG LH G++H +D M + ++E Sbjct: 112 EHGVGIREELARLVVHGTLHASGWEHPEDDSRTTSPMWRRQEQLIERF 159 >gi|163754568|ref|ZP_02161690.1| glutamyl-tRNA synthetase [Kordia algicida OT-1] gi|161325509|gb|EDP96836.1| glutamyl-tRNA synthetase [Kordia algicida OT-1] Length = 140 Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 13/138 (9%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E+ E +++ E++ +F D + LN E+ D T+++ Sbjct: 11 ELPNEAQIEQWIGNVIAS-------ENRKEGEINYIFCDDEYLHKLNVEFLNHDTLTDII 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SF + + + GDI ++ E + AN FE L ++IHG LH GY Sbjct: 64 SF------DNSLGNQLHGDIFISVERVADNANDFKVSFEEELRRVMIHGILHYCGYKDKT 117 Query: 145 DKDACVMEGLERSILEDL 162 D+D M E L+ Sbjct: 118 DEDQAEMTAKENEKLQMF 135 >gi|325299508|ref|YP_004259425.1| metalloprotease ybeY [Bacteroides salanitronis DSM 18170] gi|324319061|gb|ADY36952.1| metalloprotease ybeY [Bacteroides salanitronis DSM 18170] Length = 140 Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 6/111 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + E++ +F +I +N +Y D T++++F + + + GD+ ++ + + Sbjct: 32 KKVGEIAYIFCSDEKILEVNRQYLQHDYYTDIITFDYSE------GNRIAGDLFISLDTV 85 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 A ++ L +IIHG LHL G + + +ME E L L Sbjct: 86 RTNAEQFNAPYDTELHRVIIHGILHLCGINDKGPGEREIMEAAENKALALL 136 >gi|170289192|ref|YP_001739430.1| hypothetical protein TRQ2_1403 [Thermotoga sp. RQ2] gi|238688755|sp|B1LBP9|RRMF_THESQ RecName: Full=Probable rRNA maturation factor gi|170176695|gb|ACB09747.1| protein of unknown function UPF0054 [Thermotoga sp. RQ2] Length = 150 Score = 81.2 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 8/123 (6%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + + + + V ++++ I+ LN ++RG D PT+VL+FP Sbjct: 17 LKEKLEEIVKKEIGDVHVNVILVSEDEIKELNQQFRGQDLPTDVLTFPLMEED------- 69 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSI 158 + G+I + I+E A FE L+ ++IHG LHL GYDH +D+++ M ++ Sbjct: 70 VYGEIYVCPLIVEENAREFNNTFEKELLEVVIHGILHLAGYDHEFEDRNSKEMFEKQKKY 129 Query: 159 LED 161 +E+ Sbjct: 130 VEE 132 >gi|256820953|ref|YP_003142232.1| hypothetical protein Coch_2127 [Capnocytophaga ochracea DSM 7271] gi|256582536|gb|ACU93671.1| protein of unknown function UPF0054 [Capnocytophaga ochracea DSM 7271] Length = 139 Score = 81.2 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 6/111 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + ++ +F D + +N EY D T++++F + ++ DI ++ E + Sbjct: 32 KEVGNINYIFCDDEYLHKINVEYLQHDTLTDIITFDYSEGK------VLHSDIYISVERV 85 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + AN+ F+ L+ ++ HG LHL GY +D+ +M E + Sbjct: 86 KENANIFKVPFQRELLRVLAHGLLHLCGYKDKTPEDSALMRNKEEEKMNLF 136 >gi|218258573|ref|ZP_03474916.1| hypothetical protein PRABACTJOHN_00571 [Parabacteroides johnsonii DSM 18315] gi|218225343|gb|EEC97993.1| hypothetical protein PRABACTJOHN_00571 [Parabacteroides johnsonii DSM 18315] Length = 144 Score = 81.2 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 9/143 (6%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 A + ++I L + + V + + + + ++S +F +I +N +Y D Sbjct: 4 AFYAEDIKLPAIKKRAVGNWVKEVAATYG---KKVGDISYIFCSDEKILEVNRQYLQHDY 60 Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 T++++F GD+ ++ + ++ + + L IIHG LHL G Sbjct: 61 YTDIITFDYTSGDKIS------GDLFISLDTVKTNSETFNTSYNEELHRTIIHGILHLCG 114 Query: 140 YDHVDDKDACVMEGLERSILEDL 162 + + +ME E L L Sbjct: 115 INDKGPGEREIMEANENKALAIL 137 >gi|313203915|ref|YP_004042572.1| hypothetical protein Palpr_1441 [Paludibacter propionicigenes WB4] gi|312443231|gb|ADQ79587.1| protein of unknown function UPF0054 [Paludibacter propionicigenes WB4] Length = 138 Score = 81.2 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 9/139 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 I + ++ + + N F + + E++ +F RI +N +Y D T++++ Sbjct: 9 IKVPSIPKQKINAWIKNT---ATFYGKKVGEIAYIFCSDERILEINKQYLNHDYYTDIIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + +S ++ GDI ++ + ++ A E L ++IHG LHL G Sbjct: 66 FDYSESS------VISGDIFISIDTVKSNAEEFNVSIEEELKRILIHGILHLCGQADNTP 119 Query: 146 KDACVMEGLERSILEDLGI 164 + M E L+ I Sbjct: 120 ELRAEMTNKENLALQTFSI 138 >gi|213161076|ref|ZP_03346786.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 78 Score = 81.2 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 32/74 (43%), Positives = 47/74 (63%) Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 +LGD+++ +++E EA K E H H+++HG LHLLGYDH+DD +A ME LE Sbjct: 1 MPLLGDLIICRQVVEQEAQEQSKPLEAHWAHMVVHGSLHLLGYDHIDDDEAEEMESLETE 60 Query: 158 ILEDLGINDPYEVD 171 I+ +G DPY + Sbjct: 61 IMLAMGYEDPYIAE 74 >gi|57237128|ref|YP_178140.1| putative metalloprotease [Campylobacter jejuni RM1221] gi|86149543|ref|ZP_01067773.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni CF93-6] gi|86151268|ref|ZP_01069483.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni 260.94] gi|88597229|ref|ZP_01100464.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni 84-25] gi|205356496|ref|ZP_03223260.1| hypothetical protein Cj8421_0120 [Campylobacter jejuni subsp. jejuni CG8421] gi|218561802|ref|YP_002343581.1| putative metalloprotease [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315123723|ref|YP_004065727.1| hypothetical protein ICDCCJ07001_114 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|46577566|sp|Q9PJ06|RRMF_CAMJE RecName: Full=Probable rRNA maturation factor gi|62901174|sp|Q5HX45|RRMF_CAMJR RecName: Full=Probable rRNA maturation factor gi|57165932|gb|AAW34711.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni RM1221] gi|85839811|gb|EAQ57070.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni CF93-6] gi|85841615|gb|EAQ58862.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni 260.94] gi|88190290|gb|EAQ94264.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni 84-25] gi|112359508|emb|CAL34292.1| conserved hypothetical protein Cj0121 [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|205345683|gb|EDZ32322.1| hypothetical protein Cj8421_0120 [Campylobacter jejuni subsp. jejuni CG8421] gi|284925414|gb|ADC27766.1| putative metalloprotease [Campylobacter jejuni subsp. jejuni IA3902] gi|315017445|gb|ADT65538.1| hypothetical protein ICDCCJ07001_114 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315057561|gb|ADT71890.1| predicted metal-dependent hydrolase [Campylobacter jejuni subsp. jejuni S3] gi|315926941|gb|EFV06303.1| uncharacterized protein family UPF0054 family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 135 Score = 81.2 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 8/129 (6%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 + L S F+ VEL VF DS ++ +N E R DK T+VLSFP + Sbjct: 5 DEKCDFLESIASFLSPKDVEL--VFVDSKEMQEINLEQRKQDKTTDVLSFPLE----NID 58 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 SL LG +V+ ++ + +A LG +E + L IH LHLLG+DH +D M E+ Sbjct: 59 ESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGFDHENDN--GEMREKEK 116 Query: 157 SILEDLGIN 165 ++E + Sbjct: 117 ELIEHFNLP 125 >gi|166031812|ref|ZP_02234641.1| hypothetical protein DORFOR_01513 [Dorea formicigenerans ATCC 27755] gi|166028265|gb|EDR47022.1| hypothetical protein DORFOR_01513 [Dorea formicigenerans ATCC 27755] Length = 164 Score = 81.2 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 17/155 (10%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 + L C+ + + ++ + Y V+++L+ T + I +N ++R ID+ T+VL Sbjct: 10 ALKLPFDCQALAREVINGAL--EYIHCPYEVQVNLLLTMNDEIHEMNRDFRNIDRATDVL 67 Query: 85 SFPTAFAS---------------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 SFP L+LGDIV++ E + +A G + L Sbjct: 68 SFPMLEYETPGDFSHFESEEDCFDPETGELLLGDIVISKEKVIAQAEEYGHSVKREYAFL 127 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 I H LHL GYDH+++++ ME L+R IL +L I Sbjct: 128 IAHSVLHLSGYDHMEEEERIEMETLQREILNELNI 162 >gi|228471545|ref|ZP_04056320.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] gi|228277121|gb|EEK15801.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] Length = 138 Score = 81.2 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 57/130 (43%), Gaps = 9/130 (6%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E F + + +I+ ++ +++ +F + + +N +Y D T++++F Sbjct: 16 EEDFQRWIQLIIASE---RKKEGDINYIFCNDEYLHKINVDYLQHDTLTDIITFDY---- 68 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 G +L+ DI ++ E + A G +F L+ ++ HG LHL GY + + M Sbjct: 69 --GKDNLLASDIYISIERVRENAQEFGVDFSTELLRVMSHGILHLCGYKDKTPEQSQQMR 126 Query: 153 GLERSILEDL 162 E + Sbjct: 127 QKEEEKMALF 136 >gi|213962456|ref|ZP_03390718.1| conserved hypothetical protein [Capnocytophaga sputigena Capno] gi|213954782|gb|EEB66102.1| conserved hypothetical protein [Capnocytophaga sputigena Capno] Length = 139 Score = 81.2 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 9/127 (7%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 + + V ++ + ++ +F D + +N EY D T++++F Sbjct: 16 KNSVKRWVKSVAKSEG---KETGNINYIFCDDEYLHKINVEYLQHDTLTDIITFDYTEEK 72 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 ++ DI ++ E ++ A + F+ L+ ++ HG LHL GY KD+ +M Sbjct: 73 ------VLHSDIYISVERVKENAEIFKVPFQRELLRVLAHGLLHLCGYKDKTPKDSALMR 126 Query: 153 GLERSIL 159 E ++ Sbjct: 127 QKEEEMM 133 >gi|312890776|ref|ZP_07750306.1| protein of unknown function UPF0054 [Mucilaginibacter paludis DSM 18603] gi|311296739|gb|EFQ73878.1| protein of unknown function UPF0054 [Mucilaginibacter paludis DSM 18603] Length = 142 Score = 80.8 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 8/142 (5%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 + ++I + + + + + + EL+ +F + LN +Y D Sbjct: 7 FFEEDIQFKPKNKTRLRDWIKAAVIAEGYKLK---ELNYIFCSDRYLIELNQQYLNHDTY 63 Query: 81 TNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 T++++F + + +++GDI ++ E I+ A++ L +IIHG LHLLGY Sbjct: 64 TDIITFDNSES-----EGIVIGDIFISVERIKENASLFSVSEAEELHRVIIHGVLHLLGY 118 Query: 141 DHVDDKDACVMEGLERSILEDL 162 D +M E L L Sbjct: 119 KDKTKSDKALMTSKENLYLSQL 140 >gi|288928685|ref|ZP_06422531.1| metalloprotease [Prevotella sp. oral taxon 317 str. F0108] gi|288329669|gb|EFC68254.1| metalloprotease [Prevotella sp. oral taxon 317 str. F0108] Length = 140 Score = 80.8 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 9/137 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + + + + + + E+ +F + +I +N EY G D T+V Sbjct: 7 DGVKMPKIKRKDTTAWIKAV---AQSYGKKVGEVGYMFVNDEKILEINNEYLGHDYYTDV 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F ++ GDIV++ + + A + K FE+ L +IIHG LHL G + Sbjct: 64 ITFDYDEDD------VVNGDIVISLDTVRTNAELFDKAFEDELYRVIIHGILHLCGLNDK 117 Query: 144 DDKDACVMEGLERSILE 160 + +ME E LE Sbjct: 118 GPGEREIMEKAENKALE 134 >gi|195953789|ref|YP_002122079.1| protein of unknown function UPF0054 [Hydrogenobaculum sp. Y04AAS1] gi|195933401|gb|ACG58101.1| protein of unknown function UPF0054 [Hydrogenobaculum sp. Y04AAS1] Length = 144 Score = 80.8 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 7/141 (4%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 ++ + + + K S + F L + T+ I+ LN YR DKPT+V Sbjct: 10 KKLEIPKELKYLLKKRASYTLK---FFGFKNSMLDIYITNDEEIKHLNSAYRQKDKPTDV 66 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 LSF + LG+IV++Y+ +A G + L L++HG +HL+G+DH Sbjct: 67 LSFNINEN---VGNVYYLGEIVISYDTALKQAIEYGVSLDQELTRLLVHGIVHLMGHDHE 123 Query: 144 DD-KDACVMEGLERSILEDLG 163 +D + + S L Sbjct: 124 TSLEDEKIFFEKQESALAMFN 144 >gi|216263745|ref|ZP_03435739.1| conserved hypothetical protein [Borrelia afzelii ACA-1] gi|215979789|gb|EEC20611.1| conserved hypothetical protein [Borrelia afzelii ACA-1] Length = 152 Score = 80.8 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 4/123 (3%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML- 101 ++S + + ELS++ D+ I+ LN ++R ++PT+VLSF + D + Sbjct: 25 ILSVLNTLSISDFELSVILCDNVYIQKLNNKFRNKNEPTDVLSFNYNEVNEDLVDGINYK 84 Query: 102 --GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSI 158 GD+++++E ++ A E L + IHG LHL+GY H + M L+ +I Sbjct: 85 IQGDLIISFEYLKFSAQEFNVEIYEELQRVTIHGILHLMGYKHETNDFQKEGMLILQENI 144 Query: 159 LED 161 L Sbjct: 145 LRK 147 >gi|298373323|ref|ZP_06983312.1| metalloprotease [Bacteroidetes oral taxon 274 str. F0058] gi|298274375|gb|EFI15927.1| metalloprotease [Bacteroidetes oral taxon 274 str. F0058] Length = 136 Score = 80.8 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 9/140 (6%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 + + L + + +K + + +S +F D +I +N ++ D T+ Sbjct: 6 SENVEAPKLYRNSITGWIRRVANKYGKIVGD---VSFIFCDDIKILEINKQFLNHDYYTD 62 Query: 83 VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 V++F G GDI ++ E +E A F+N L ++IHG LHL G + Sbjct: 63 VITFDYTEGDVIG------GDIFISLETVESNAKEFLTTFDNELKRVMIHGILHLCGQND 116 Query: 143 VDDKDACVMEGLERSILEDL 162 ++ M E L+ + Sbjct: 117 KTPEEKQEMRYKENLALQLI 136 >gi|281422349|ref|ZP_06253348.1| putative metalloprotease [Prevotella copri DSM 18205] gi|281403580|gb|EFB34260.1| putative metalloprotease [Prevotella copri DSM 18205] Length = 144 Score = 80.8 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 9/139 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + + + + + + + + E+ +F D +I +N EY G D T+V Sbjct: 7 DGVKMPKIKKRDTSAWIRKVAASHG---RKVGEIGYMFVDDEKILEVNNEYLGHDYYTDV 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F ++ GDIV++ + + A GK +++ L +IIHG LHL G + Sbjct: 64 ITFDYDEDD------VINGDIVISLDTVRTNAEQFGKTYDDELHRVIIHGILHLCGINDK 117 Query: 144 DDKDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 118 GPGEREIMEENENKALALL 136 >gi|312129899|ref|YP_003997239.1| hypothetical protein Lbys_1166 [Leadbetterella byssophila DSM 17132] gi|311906445|gb|ADQ16886.1| protein of unknown function UPF0054 [Leadbetterella byssophila DSM 17132] Length = 152 Score = 80.8 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 60/151 (39%), Gaps = 16/151 (10%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++ + VE + ++ + + + + EL+ +F + Sbjct: 11 MINFNVEVEGFRLTERTKKKSWLKNLIQ-----------SHGKKVGELNYIFLSDEDLLE 59 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N +Y T++++F + ++ GDI ++ + + A FE L+ + Sbjct: 60 INIQYLDHHTYTDIITFDNSEEEK-----MIEGDIFISVDRVRENAQTFKVSFEQELLRV 114 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + HG LHLLG ++D+ +M E + Sbjct: 115 MAHGVLHLLGLKDKTEEDSKLMRAGEEKAIA 145 >gi|57168710|ref|ZP_00367842.1| conserved hypothetical protein TIGR00043 [Campylobacter coli RM2228] gi|305432662|ref|ZP_07401823.1| probable metalloprotease [Campylobacter coli JV20] gi|57019991|gb|EAL56671.1| conserved hypothetical protein TIGR00043 [Campylobacter coli RM2228] gi|304444373|gb|EFM37025.1| probable metalloprotease [Campylobacter coli JV20] Length = 135 Score = 80.8 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 43/129 (33%), Positives = 63/129 (48%), Gaps = 8/129 (6%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 + L F+ VEL VF +S ++ +N E R DK T+VLSFP + Sbjct: 5 DEKCEFLEPIASFLSSKDVEL--VFVESKEMQEINLEQRKQDKTTDVLSFPLE----NID 58 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 SL LG +V+ ++ + +A LG FE + L IH LHLLG+DH D M E+ Sbjct: 59 ESLPLGSVVINVDLAKQKAKELGHSFEEEVSLLFIHAMLHLLGFDHEVDN--GEMREKEK 116 Query: 157 SILEDLGIN 165 ++E + Sbjct: 117 ELIEHFNLP 125 >gi|295105853|emb|CBL03396.1| conserved hypothetical protein TIGR00043 [Gordonibacter pamelaeae 7-10-1-b] Length = 155 Score = 80.8 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 16/157 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+QI + DE+ L E+ K E+S+ F I L Sbjct: 1 MDIQINYDYR--KDELEKLPLHELA-------QFVLAREDKPFNTEVSVSFVTDEAIAEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-------GCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 N YR + PT+VLSF + D LGD+++A ++ + G FE Sbjct: 52 NERYRHKEGPTDVLSFECDGVNDDLSAMTLAEDPVYELGDVIIAPDVAARQTREFGTSFE 111 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + L++HG LHL GYDH+ D +A VME E ILE Sbjct: 112 EEISLLLVHGLLHLCGYDHIADDEAEVMEKREAEILE 148 >gi|154494262|ref|ZP_02033582.1| hypothetical protein PARMER_03613 [Parabacteroides merdae ATCC 43184] gi|154085946|gb|EDN84991.1| hypothetical protein PARMER_03613 [Parabacteroides merdae ATCC 43184] Length = 148 Score = 80.8 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 57/143 (39%), Gaps = 9/143 (6%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 A + ++ L + + V + + + + ++S +F +I +N +Y D Sbjct: 4 AFYAEDTKLPAIKKRAVGNWVKEVAATYG---KKVGDISYIFCSDEKILEVNRQYLQHDY 60 Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 T++++F GD+ ++ + ++ + + L IIHG LHL G Sbjct: 61 YTDIITFDYTSGDKIS------GDLFISLDTVKTNSEAFNTPYNEELHRTIIHGILHLCG 114 Query: 140 YDHVDDKDACVMEGLERSILEDL 162 + + +ME E L L Sbjct: 115 INDKGPGERELMEANENKALAIL 137 >gi|124010286|ref|ZP_01694939.1| conserved hypothetical protein, putative [Microscilla marina ATCC 23134] gi|123983671|gb|EAY24111.1| conserved hypothetical protein, putative [Microscilla marina ATCC 23134] Length = 157 Score = 80.8 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 8/137 (5%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 ++ E K V+ + + + L+ +F + + +N EY D T+ Sbjct: 22 SEQTDFVLSKEAEAIKWVNLIAEQANYKING---LNYIFCNDAYLHQINVEYLDHDTYTD 78 Query: 83 VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +++F + L+ GDI ++ + I A F L ++ HG LHLLG+ Sbjct: 79 IITFDNSEE-----EQLIEGDIFISIDRIRENAATYNASFAVELHRVMAHGLLHLLGFGD 133 Query: 143 VDDKDACVMEGLERSIL 159 D + +M E L Sbjct: 134 KTDDEKLIMRTQEDKAL 150 >gi|261878861|ref|ZP_06005288.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270334540|gb|EFA45326.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 143 Score = 80.4 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 62/138 (44%), Gaps = 9/138 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + L ++ + + + + + + +F D +I +N +Y G D T++++ Sbjct: 9 VELPSIKHRETTAWIKAVAATYG---KRVGSIGYMFVDDKKILEVNNQYLGHDYYTDIIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F ++ GD+V++ + + A + GK++ + L +IIHG LHL G + Sbjct: 66 FDYDD------GDVINGDLVISLDTVRSNAELFGKDYADELNRVIIHGILHLCGINDKGP 119 Query: 146 KDACVMEGLERSILEDLG 163 + +ME E L L Sbjct: 120 GEREIMEAHEEKALALLK 137 >gi|34540326|ref|NP_904805.1| hypothetical protein PG0510 [Porphyromonas gingivalis W83] gi|62901349|sp|Q7MWS9|RRMF_PORGI RecName: Full=Probable rRNA maturation factor gi|34396638|gb|AAQ65704.1| conserved hypothetical protein [Porphyromonas gingivalis W83] Length = 151 Score = 80.4 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 9/137 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + L + + K ++ + S+ + + E+S +F D I N E+ D T++++ Sbjct: 11 VSLPRIRRRIVGKWIAEVCSRYG---KAVGEISYLFCDDEYILKANQEFLDHDYYTDIIT 67 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + A + GD++++ + + A L +E+ L +IIHG LHL G Sbjct: 68 FDSCEAD------TVNGDLLISLDTVRSNARALDLRYEDELHRVIIHGILHLCGLKDKSK 121 Query: 146 KDACVMEGLERSILEDL 162 KD M E L L Sbjct: 122 KDEAQMRAAEEKALVML 138 >gi|300727523|ref|ZP_07060914.1| conserved hypothetical protein [Prevotella bryantii B14] gi|299775226|gb|EFI71827.1| conserved hypothetical protein [Prevotella bryantii B14] Length = 145 Score = 80.4 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + + + + + + + + ++ +F D RI N +Y G D T+V Sbjct: 7 DGVKMPKIKKRETNAWIKAVAADHG---KKVGDIGYMFVDDERILECNRQYLGHDYYTDV 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F + +++ GDIV++ + I A GK +E+ L +IIHG LHL G + Sbjct: 64 ITFDYDDDYEE--ENIIGGDIVISLDTIRTNAEKFGKTYEDELYRVIIHGILHLCGINDK 121 Query: 144 DDKDACVMEGLERSILEDL 162 + +ME E L+ L Sbjct: 122 GPGEREIMEAHEDKALKML 140 >gi|261211995|ref|ZP_05926281.1| predicted metal-dependent hydrolase [Vibrio sp. RC341] gi|260838603|gb|EEX65254.1| predicted metal-dependent hydrolase [Vibrio sp. RC341] Length = 78 Score = 80.4 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 49/76 (64%) Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 +LGD+V+ +++E EA K + H H+++HG LHLLGYDH++D +A ME LE Sbjct: 1 MEMDLLGDLVICRQVVEHEAIEQNKPLQAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLE 60 Query: 156 RSILEDLGINDPYEVD 171 I++++G DPY + Sbjct: 61 TEIMQEMGFTDPYLAE 76 >gi|148284177|ref|YP_001248267.1| putative metalloprotease [Orientia tsutsugamushi str. Boryong] gi|146739616|emb|CAM79399.1| putative metal-dependent hydrolase [Orientia tsutsugamushi str. Boryong] Length = 167 Score = 80.4 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 76/167 (45%), Gaps = 7/167 (4%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 ++ + ++ +W + + K E+ ++ T+ H ++ Sbjct: 1 MKIKAALIRQHPIWNNHNEINLCYVKKIIKTTLCHNVFAKLQLVQQAEVVILLTNDHEMQ 60 Query: 69 TLNFEYRGIDKPTNVLSFPTAFAS-------SDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 LNF +R I+KPTNVLSFP + + LGDI Y I EA K Sbjct: 61 NLNFTHRKINKPTNVLSFPDQVLDWQNLSTLDIQDNYIYLGDIAFGYNSISKEAVEQQKT 120 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 F NH HL+IH LHLLG+DH D +A +ME LE ++L I PY Sbjct: 121 FINHFTHLLIHAILHLLGFDHQHDSEAIIMEELEVNLLAKFSIASPY 167 >gi|189460233|ref|ZP_03009018.1| hypothetical protein BACCOP_00870 [Bacteroides coprocola DSM 17136] gi|189433094|gb|EDV02079.1| hypothetical protein BACCOP_00870 [Bacteroides coprocola DSM 17136] Length = 140 Score = 80.4 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 9/135 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + + + + + + E++ +F +I +N +Y D T++++F Sbjct: 12 PAIKKRETTAWIKAV---AETYGKKVGEIAYIFCSDEKILEVNRQYLQHDYYTDIITFDY 68 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + + GD+ ++ + + A G +E L +IIHG LHL G + + Sbjct: 69 CE------GNRIAGDLFISLDTVRTNAEQFGATYETELHRVIIHGILHLCGINDKGPGER 122 Query: 149 CVMEGLERSILEDLG 163 +ME E L+ L Sbjct: 123 EIMEAAENKALDLLK 137 >gi|304439779|ref|ZP_07399677.1| metal dependent hydrolase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371766|gb|EFM25374.1| metal dependent hydrolase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 144 Score = 80.4 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 40/128 (31%), Positives = 69/128 (53%), Gaps = 7/128 (5%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 K++ + + F + E+S+ F I LN +YRG+D+ T+VLSFP ++ Sbjct: 23 KSIEAALKEIEF--TDDYEVSVSFVGDDEIHELNRDYRGVDRTTDVLSFPMDDEFTN--- 77 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 MLGDIV+ + +A G + + +L +H LHL+G+DH +++D M +E Sbjct: 78 --MLGDIVININKVIEQAKEYGHSEKREISYLTVHSSLHLMGFDHEEEEDKKEMRAVEDR 135 Query: 158 ILEDLGIN 165 ++E L I+ Sbjct: 136 VMEKLEIS 143 >gi|111114881|ref|YP_709499.1| putative metalloprotease [Borrelia afzelii PKo] gi|123341437|sp|Q0SPA5|RRMF_BORAP RecName: Full=Probable rRNA maturation factor gi|110890155|gb|ABH01323.1| conserved hypothetical protein [Borrelia afzelii PKo] Length = 152 Score = 80.4 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 4/123 (3%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML- 101 ++S + + ELS++ D+ I+ LN ++R ++PT+VLSF + D + Sbjct: 25 ILSVLNTLSISDFELSVILCDNVYIQKLNNKFRNKNEPTDVLSFNYNEVNEDLVDGINYK 84 Query: 102 --GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSI 158 GD+++++E ++ A E L + IHG LHL+GY H + M L+ +I Sbjct: 85 IQGDLIISFEYLKFSAQEFNVEIYEELQRVTIHGILHLMGYKHETNDFQKEGMLILQENI 144 Query: 159 LED 161 L Sbjct: 145 LRK 147 >gi|188995326|ref|YP_001929578.1| hypothetical protein PGN_1462 [Porphyromonas gingivalis ATCC 33277] gi|238691487|sp|B2RKT6|RRMF_PORG3 RecName: Full=Probable rRNA maturation factor gi|188595006|dbj|BAG33981.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC 33277] Length = 151 Score = 80.4 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 9/137 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + L + + K ++ + S+ + + E+S +F D I N E+ D T++++ Sbjct: 11 VSLPRIRRRIVGKWIAEVCSRYG---KAVGEISYLFCDDEYILKANQEFLDHDYYTDIIT 67 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + A + GD++++ + + A L +E+ L +IIHG LHL G Sbjct: 68 FDSCEAD------TVNGDLLISLDTVRSNARALDLRYEDELHRVIIHGILHLCGLKDKSK 121 Query: 146 KDACVMEGLERSILEDL 162 KD M E L L Sbjct: 122 KDEAQMRAAEEEALVML 138 >gi|315929911|gb|EFV09070.1| uncharacterized protein family UPF0054 family protein [Campylobacter jejuni subsp. jejuni 305] Length = 135 Score = 80.4 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 8/129 (6%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 + L S F+ VEL VF DS ++ +N E R DK T+VLSFP + Sbjct: 5 DEKCDFLESIESFLSPKDVEL--VFVDSKEMQEINLEQRKQDKTTDVLSFPLE----NID 58 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 SL LG +V+ ++ + +A LG +E + L IH LHLLG+DH +D M E+ Sbjct: 59 ESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGFDHENDN--GEMREKEK 116 Query: 157 SILEDLGIN 165 ++E + Sbjct: 117 ELIEHFNLP 125 >gi|255027003|ref|ZP_05298989.1| putative metalloprotease [Listeria monocytogenes FSL J2-003] Length = 138 Score = 80.4 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 62/146 (42%), Gaps = 18/146 (12%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + L++ + E DE L E + + Y E ELSL FT + I Sbjct: 1 MTVLEIDLLDETKNLLDEDK--QLVENILQ------FAAEYLKIEQGTELSLTFTTNEGI 52 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCS----------SLMLGDIVLAYEIIEIEANV 117 +N EYR D+ T+V+SF MLGDI+++ E E +A Sbjct: 53 REINREYRDKDQATDVISFALEEMGDGETEIDWGEFDLETPRMLGDIIISTEKAEEQAKD 112 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHV 143 G L L +HG LHLLGYDH+ Sbjct: 113 YGHTKARELGFLAVHGLLHLLGYDHM 138 >gi|303246548|ref|ZP_07332827.1| protein of unknown function UPF0054 [Desulfovibrio fructosovorans JJ] gi|302492258|gb|EFL52133.1| protein of unknown function UPF0054 [Desulfovibrio fructosovorans JJ] Length = 149 Score = 80.4 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 4/84 (4%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 L + LN +Y G+ PTNVLSFP D LG++ ++ + EA + Sbjct: 40 LRLVGDAEMARLNSDYLGLCGPTNVLSFPAD----DPDRPDYLGEMAVSRDTAAREAFLY 95 Query: 119 GKEFENHLVHLIIHGFLHLLGYDH 142 G++ HL L+ HGFLHL G+DH Sbjct: 96 GQDPTEHLTRLLAHGFLHLAGFDH 119 >gi|224023519|ref|ZP_03641885.1| hypothetical protein BACCOPRO_00221 [Bacteroides coprophilus DSM 18228] gi|224016741|gb|EEF74753.1| hypothetical protein BACCOPRO_00221 [Bacteroides coprophilus DSM 18228] Length = 140 Score = 80.4 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 59/137 (43%), Gaps = 9/137 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + + + + + E++ +F +I +N +Y D T++++ Sbjct: 9 VDMPAIKKRETSAWIKAV---AETYGKKVGEIAYIFCSDEKILEVNRQYLQHDYYTDIIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + + GD+ ++ + + A G +E L +IIHG LHL G + Sbjct: 66 FDYCE------GNRISGDLFISLDTVRTNAEQFGATYETELHRVIIHGILHLCGINDKGP 119 Query: 146 KDACVMEGLERSILEDL 162 + +ME E L+ L Sbjct: 120 GEREIMEAAENRALDML 136 >gi|224534895|ref|ZP_03675464.1| conserved hypothetical protein [Borrelia spielmanii A14S] gi|224513835|gb|EEF84160.1| conserved hypothetical protein [Borrelia spielmanii A14S] Length = 155 Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 18/161 (11%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + + DL + VEN I L ++S + + ELS++ D+ I Sbjct: 1 MSKFDLNLLVEN------IKFEHLSIFY-----DFILSVLNTLSISDFELSVILCDNVYI 49 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKE 121 + LN ++R ++PT+VLSF + DG + + GD+++++E ++ A E Sbjct: 50 QKLNNKFRNKNEPTDVLSFNYNEDNEVNEGLVDGINYKIQGDLIISFEYLKFSAQEFNVE 109 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILED 161 L + IHG LHL+GY H + M L+ +IL Sbjct: 110 IYEELQRVTIHGILHLMGYKHETNDFQKEGMLILQENILRK 150 >gi|193216879|ref|YP_002000121.1| hypothetical protein MARTH_orf636 [Mycoplasma arthritidis 158L3-1] gi|193002202|gb|ACF07417.1| conserved hypothetical protein [Mycoplasma arthritidis 158L3-1] Length = 106 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%) Query: 66 RIETLNFEYRGIDKPTNVLSFPTAF-ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 +++ LN +R + T++LSFP + L LG I+++ I+ +A + Sbjct: 4 KMKKLNRHFRNKNYVTDILSFPLEGLEELNFLEVLPLGQIIMSPWKIKKQAKEFNHSLKR 63 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ HG HL G+DH + +A +M +I+ L I Sbjct: 64 EFCYIFAHGIAHLFGFDHQTEDEAKIMNAHVDNIMNKLNI 103 >gi|153807201|ref|ZP_01959869.1| hypothetical protein BACCAC_01479 [Bacteroides caccae ATCC 43185] gi|149130321|gb|EDM21531.1| hypothetical protein BACCAC_01479 [Bacteroides caccae ATCC 43185] Length = 138 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 59/137 (43%), Gaps = 9/137 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 I + + + + + + + + + E++ +F +I +N +Y D T++++ Sbjct: 10 IKMPEIKKRETTEWIKAVAASYG---KRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + + A G ++N L +IIHG LHL G + Sbjct: 67 FDYCE------GDRLSGDLFISLDTVRTNAEQFGASYDNELHRVIIHGILHLCGINDKGP 120 Query: 146 KDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 121 GEREIMEAAENKALAML 137 >gi|32266731|ref|NP_860763.1| putative metalloprotease [Helicobacter hepaticus ATCC 51449] gi|46577395|sp|Q7VGT8|RRMF_HELHP RecName: Full=Probable rRNA maturation factor gi|32262782|gb|AAP77829.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 163 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 8/115 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS------SDGCSSLMLGDIVLAYEI 110 L ++ DS + +NF +R + T+VLSFP + + LG +V+ YE+ Sbjct: 42 LEVLAVDSQNMREINFAHRAKNSTTDVLSFPLDVSEGADSHILAKQMKICLGSVVINYEL 101 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + A G ++ + L IHGFLH+LGYDH D LE+ I+E LG+ Sbjct: 102 AQKVAKQRGHSTQDEISLLFIHGFLHILGYDHEVDNGEQ--RALEQKIIESLGLK 154 >gi|281424893|ref|ZP_06255806.1| putative metalloprotease [Prevotella oris F0302] gi|299141980|ref|ZP_07035114.1| metalloprotease [Prevotella oris C735] gi|281401011|gb|EFB31842.1| putative metalloprotease [Prevotella oris F0302] gi|298576442|gb|EFI48314.1| metalloprotease [Prevotella oris C735] Length = 142 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 9/135 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + + + + + + + + ++ +F D +I +N +Y G D T++++F Sbjct: 12 PKMKKRLINRWIRAVAATYG---RKVGDIGYMFVDDEKILEVNNDYLGHDYYTDIITFDY 68 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 ++ GD+V++ + + A GKE+++ L +IIHG LHL G + + Sbjct: 69 DEDD------IISGDLVISLDTVRTNAEQFGKEYDDELHRVIIHGILHLCGINDKGPGER 122 Query: 149 CVMEGLERSILEDLG 163 +ME E L L Sbjct: 123 EIMEANENKALALLK 137 >gi|301767368|ref|XP_002919099.1| PREDICTED: putative metalloprotease C21orf57-like [Ailuropoda melanoleuca] Length = 164 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 8/117 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA-------SSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSFP D LGDI Sbjct: 33 QKFDLGIICVDNKNIQHINRMYREKNIPTDVLSFPFHENIKAGELPQPDFQDDYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L E I + ++ + L HG HLLG+ H + + M E+ +LE+L Sbjct: 93 LGVEYIFQQCRGHE-DYYDILTVTATHGLCHLLGFTHSTEAEWQKMYQKEKQVLEEL 148 >gi|119952863|ref|YP_945072.1| putative metalloprotease [Borrelia turicatae 91E135] gi|254799885|sp|A1QYL0|RRMF_BORT9 RecName: Full=Probable rRNA maturation factor gi|119861634|gb|AAX17402.1| hypothetical metal-binding protein [Borrelia turicatae 91E135] Length = 148 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 ++S F+ ELS++ ++ I+ LN ++R +PT+VLSF S + G Sbjct: 25 ILSVLDFLCIKEYELSVILCNNEYIQKLNSQFRQKSEPTDVLSFNYLEES-GQIDHKIQG 83 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILED 161 D++++ E +E + E + L IHG LHL+GY H + M ++ +L + Sbjct: 84 DLIISLEYLEFSSLEFNVELYDELQRNTIHGILHLIGYTHKTNDFQNEEMLIIQEKVLRE 143 >gi|315224153|ref|ZP_07865993.1| possible metal dependent hydrolase [Capnocytophaga ochracea F0287] gi|314945886|gb|EFS97895.1| possible metal dependent hydrolase [Capnocytophaga ochracea F0287] Length = 139 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 6/111 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + ++ +F D + +N EY D T++++F + ++ DI ++ E + Sbjct: 32 KEVGNINYIFCDDEYLHKINVEYLQHDTLTDIITFDYSEGK------VLHSDIYISVERV 85 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + AN+ F+ L+ ++ HG LHL GY +D+ +M E + Sbjct: 86 KENANIFKVPFQKELLRVLAHGLLHLCGYKDKTPEDSALMRNKEEEKMNLF 136 >gi|330998027|ref|ZP_08321858.1| translation metalloprotein YbeY [Paraprevotella xylaniphila YIT 11841] gi|329569328|gb|EGG51108.1| translation metalloprotein YbeY [Paraprevotella xylaniphila YIT 11841] Length = 141 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 9/137 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + ++ + V + + + + E++ +F D +I +N +Y G D T++ Sbjct: 7 DGVKMPSIKKRENTAWVKAVAASYG---KRVGEIAYIFVDDEKILEVNRQYLGHDYYTDI 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F ++ GD+ ++ + + A +G +E L +IIHG LHL G + Sbjct: 64 ITFDYCE------GDVISGDLFISLDTVRTNAEQVGATYEEELHRVIIHGILHLCGINDK 117 Query: 144 DDKDACVMEGLERSILE 160 + +ME E L Sbjct: 118 GPGEREIMEAAEDKALA 134 >gi|58584858|ref|YP_198431.1| metal-dependent hydrolase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419174|gb|AAW71189.1| Predicted metal-dependent hydrolase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 171 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 10/158 (6%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 L L++ I + W + F + N K + + +S+ D + + Sbjct: 20 LLMLEVNIL--DKKWYSIVEDPKG----FTLNIINASLKELKIDQYKPNISIALADDNLL 73 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R ++KPTNVLSFP SS+ LGDI ++ + + E++ H+ Sbjct: 74 HQLNLRFRQMNKPTNVLSFPCEQLSSECD----LGDIAISIDTVRKESDEYHIPIPAHVA 129 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 H+++HG LHLLGYDH + VM+ LE IL LG N Sbjct: 130 HMLVHGLLHLLGYDHQKKGEEVVMKNLEGKILASLGYN 167 >gi|298207257|ref|YP_003715436.1| hypothetical protein CA2559_03360 [Croceibacter atlanticus HTCC2559] gi|83849893|gb|EAP87761.1| hypothetical protein CA2559_03360 [Croceibacter atlanticus HTCC2559] Length = 138 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 17/150 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + E +E + L+S +N+ E++ +F D + ++N Sbjct: 2 INFFTETEFIINEDEFNSW-----------LLSVIASEGKNLGEINYIFCDDAYLLSINQ 50 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +Y D T+++SF T+ + GDI ++ E I+ A ++ L +++H Sbjct: 51 QYLDHDTYTDIISFDTSEGNDLS------GDIFISVERIQENAQQFNVSVDDELKRVLVH 104 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDL 162 G LH GY D +A +M E L+ Sbjct: 105 GILHFCGYKDKTDDEAKLMREKEDEKLKMF 134 >gi|86131105|ref|ZP_01049704.1| conserved hypothetical protein [Dokdonia donghaensis MED134] gi|85818516|gb|EAQ39676.1| conserved hypothetical protein [Dokdonia donghaensis MED134] Length = 135 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 13/136 (9%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E+ +S K+ + EL+ +F D + +N ++ D T+++ Sbjct: 11 ELVNPEQIISWLEVVISA-------EKKIVGELNYIFCDDAYLHKINVDFLDHDTFTDII 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SF +++ GD+ ++ E +E A F + L +++HG LH GY Sbjct: 64 SFDY------TQGNVVSGDMYISVERVEENAQDFNCSFRDELSRVMVHGILHYCGYKDKS 117 Query: 145 DKDACVMEGLERSILE 160 ++A +M E + L Sbjct: 118 IEEAKLMRSKENTYLA 133 >gi|327403529|ref|YP_004344367.1| metalloprotease ybeY [Fluviicola taffensis DSM 16823] gi|327319037|gb|AEA43529.1| metalloprotease ybeY [Fluviicola taffensis DSM 16823] Length = 146 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 63/147 (42%), Gaps = 14/147 (9%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I E+ + + SN+ +++ ++SL+F + +N Sbjct: 2 VEIFFEDID-----EVPGVNPEFLFAWYSNVCEAEG---KSLGDISLIFCSDEHLLEMNR 53 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 EY D T++++F L+ GD+ ++ + + A+ F++ L + +H Sbjct: 54 EYLQHDFFTDIITFDYTEED------LVSGDLFISVDRVRDNADEFDVLFQDELHRVCVH 107 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSIL 159 G LHL GY D+D +M E +L Sbjct: 108 GLLHLCGYKDKSDEDEKLMRQKENDML 134 >gi|157164120|ref|YP_001466415.1| putative metalloprotease [Campylobacter concisus 13826] gi|166227306|sp|A7ZCA7|RRMF_CAMC1 RecName: Full=Probable rRNA maturation factor gi|112801656|gb|EAT99000.1| putative metalloprotease _0477 [Campylobacter concisus 13826] Length = 145 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 7/112 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 E+ L+F + + LN RGIDK T+VLSFP LG IV+ ++++ Sbjct: 21 PGEVELLFINKDEMRELNRSERGIDKTTDVLSFPLEL-----VIHAPLGSIVINKDMVKE 75 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A L + L HG LH+LGYDH D M E ++ + Sbjct: 76 KAAELNHSEDAETALLFTHGLLHILGYDHEKDD--GQMREKECEVIAKFNLP 125 >gi|109947837|ref|YP_665065.1| putative metalloprotease [Helicobacter acinonychis str. Sheeba] gi|122973244|sp|Q17WB0|RRMF_HELAH RecName: Full=Probable rRNA maturation factor gi|109715058|emb|CAK00066.1| conserved hypothetical protein [Helicobacter acinonychis str. Sheeba] Length = 140 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 7/123 (5%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 L+ K + + LV ++ +N R D T+VLSFP LG Sbjct: 16 LLEKIARLLAPTQMVELVLVSGEKMREINRNLRNCDYATDVLSFPLEAIP-----HTPLG 70 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +V+ + + A LG EN + L IHG LHLLGYDH +KD E +++ Sbjct: 71 SVVINMSLAQTNALKLGHSLENEIALLFIHGMLHLLGYDH--EKDQGEQRQKESELIKTF 128 Query: 163 GIN 165 + Sbjct: 129 NLP 131 >gi|332881691|ref|ZP_08449339.1| translation metalloprotein YbeY [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680330|gb|EGJ53279.1| translation metalloprotein YbeY [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 141 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 9/137 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + ++ + V + + + + E++ +F D +I +N +Y G D T++ Sbjct: 7 DGVKMPSIKKRENTAWVKAVAASYG---KRVGEIAYIFVDDEKILEVNRQYLGHDYYTDI 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F ++ GD+ ++ + + A +G +E L +IIHG LHL G + Sbjct: 64 ITFDYCE------GDVISGDLFISLDTVRTNAEQVGATYEEELHRVIIHGILHLCGINDK 117 Query: 144 DDKDACVMEGLERSILE 160 + +ME E L Sbjct: 118 GPGEREIMEAAEDKALA 134 >gi|225551912|ref|ZP_03772852.1| conserved hypothetical protein [Borrelia sp. SV1] gi|225370910|gb|EEH00340.1| conserved hypothetical protein [Borrelia sp. SV1] Length = 155 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 7/116 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVL 106 + ELS++ D+ I+ LN ++R ++PT+VLSF + DG + + GD+V+ Sbjct: 35 SDFELSVILCDNAYIQELNNKFRNKNEPTDVLSFNYNEHNELNEDLVDGINCKIQGDLVI 94 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILED 161 ++E ++ A E L + IHG LHL+GY H + M L+ +IL++ Sbjct: 95 SFEYLKFSAQEFNVEIYEELQRVTIHGILHLMGYKHETNDFQKEGMLILQENILKE 150 >gi|148887457|sp|Q4A620|RRMF_MYCS5 RecName: Full=Probable rRNA maturation factor gi|144575092|gb|AAZ43801.2| conserved hypothetical protein [Mycoplasma synoviae 53] Length = 155 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 46 KGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-DGCSSLMLGDI 104 YF + L + S+ LNFEYR DK T++LSF D L LG++ Sbjct: 32 AKYFKINKQIILDVSIVSSYTSRKLNFEYRQKDKTTDILSFGYDDFDLYDKMPFLNLGEL 91 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 V+ I+ +A + + ++L HG +HL GYDH +K+ M+ + SI L I Sbjct: 92 VICNNKIKKQAIIFNHSIKREFLYLFTHGLVHLYGYDHQSEKEKKEMDFIVDSIFNPLKI 151 >gi|195941799|ref|ZP_03087181.1| putative metalloprotease [Borrelia burgdorferi 80a] gi|216264854|ref|ZP_03436846.1| conserved hypothetical protein [Borrelia burgdorferi 156a] gi|221217391|ref|ZP_03588862.1| conserved hypothetical protein [Borrelia burgdorferi 72a] gi|224533033|ref|ZP_03673639.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23] gi|224533910|ref|ZP_03674495.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a] gi|225549226|ref|ZP_03770199.1| conserved hypothetical protein [Borrelia burgdorferi 94a] gi|225549724|ref|ZP_03770689.1| conserved hypothetical protein [Borrelia burgdorferi 118a] gi|215981327|gb|EEC22134.1| conserved hypothetical protein [Borrelia burgdorferi 156a] gi|221192669|gb|EEE18885.1| conserved hypothetical protein [Borrelia burgdorferi 72a] gi|224512027|gb|EEF82422.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23] gi|224512913|gb|EEF83279.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a] gi|225369684|gb|EEG99132.1| conserved hypothetical protein [Borrelia burgdorferi 118a] gi|225370084|gb|EEG99524.1| conserved hypothetical protein [Borrelia burgdorferi 94a] gi|312148321|gb|ADQ30980.1| conserved hypothetical protein [Borrelia burgdorferi JD1] Length = 155 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 7/116 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVL 106 + ELS++ D+ I+ LN ++R ++PT+VLSF + DG + + GD+V+ Sbjct: 35 SDFELSVILCDNAYIQELNNKFRNKNEPTDVLSFNYNEHNELNEDLVDGINYKIQGDLVI 94 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILED 161 ++E ++ A E L + IHG LHL+GY H + M L+ +IL++ Sbjct: 95 SFEYLKFSAQEFNVEIYEELQRVTIHGILHLMGYKHETNDFQKESMLILQENILKE 150 >gi|169331623|ref|ZP_02860816.1| hypothetical protein ANASTE_00007 [Anaerofustis stercorihominis DSM 17244] gi|169259685|gb|EDS73651.1| hypothetical protein ANASTE_00007 [Anaerofustis stercorihominis DSM 17244] Length = 152 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 8/133 (6%) Query: 10 RLDLQIAVENALWGD-EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 ++ ++ +N D ++ K + Y + ++S+ +S I+ Sbjct: 1 MIETEVLFDNRSGKDVSEETYNKIQLAINKTLE------YENFKKPSQVSVSLVNSEEIK 54 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 TLN YR IDK T+VLSFP + ++LGD+VL + + +A G + + + Sbjct: 55 TLNNYYRNIDKTTDVLSFPMDDDEFED-EVIILGDVVLCLDKAKEQAIEFGHSLDREICY 113 Query: 129 LIIHGFLHLLGYD 141 L +H LHLLG+D Sbjct: 114 LTVHSTLHLLGFD 126 >gi|294675104|ref|YP_003575720.1| hypothetical protein PRU_2470 [Prevotella ruminicola 23] gi|294471648|gb|ADE81037.1| conserved hypothetical protein TIGR00043 [Prevotella ruminicola 23] Length = 140 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 59/138 (42%), Gaps = 9/138 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + + + + E+ +F + +I +N ++ G D T++++ Sbjct: 9 VKFPNIKKRETTSWIRQVAASYG---KKVGEIGYLFVNDEKILEVNNQFLGHDYYTDIIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GDI ++ + + A+ G+ ++ L +IIHG LHL G + Sbjct: 66 FDYCEGK------TISGDIYISVDTVFTNADKFGRPYDEELHRVIIHGILHLCGINDKGP 119 Query: 146 KDACVMEGLERSILEDLG 163 + +ME E L L Sbjct: 120 GEREIMEAAEDKALALLK 137 >gi|254779710|ref|YP_003057816.1| putative metalloprotease [Helicobacter pylori B38] gi|254001622|emb|CAX29737.1| Conserved hypothetical protein [Helicobacter pylori B38] Length = 140 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F L+ K V + L+ + +N + RG D T+VL Sbjct: 3 EIDNQTPLESDFL-----LLEKIANVLAPTQIIELILVSDETMREINRDLRGCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP LG +V+ + + A LG E + L IHG LHLLGYDH Sbjct: 58 SFPLEAIP-----HTPLGSVVINAPLAQTNALKLGHRLEEEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 111 EKDKGEQRQKESELIKAFDLP 131 >gi|282878864|ref|ZP_06287631.1| metalloprotein, YbeY/ UPF0054family [Prevotella buccalis ATCC 35310] gi|281299072|gb|EFA91474.1| metalloprotein, YbeY/ UPF0054family [Prevotella buccalis ATCC 35310] Length = 141 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 9/137 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + + + + + + + I E+ +F D +I +N EY G D T++ Sbjct: 7 DGVKMPKIKKRETSAWIKAVAATYG---RKIGEVGYMFVDDEKILEVNNEYLGHDYYTDI 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F GDIV++ + + A GK +E L +IIHG LHL G + Sbjct: 64 ITFDYDEGDIIN------GDIVISLDTVRTNAERFGKPYEEELYRVIIHGILHLCGINDK 117 Query: 144 DDKDACVMEGLERSILE 160 + +ME E L Sbjct: 118 GPGEREIMEAAEDKALA 134 >gi|260910780|ref|ZP_05917432.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260635102|gb|EEX53140.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 140 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 9/137 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + + + + + E+ +F + +I +N EY G D T+V Sbjct: 7 DGVKMPKIKRKDTTAWIKAV---AQTYGRKVGEVGYMFVNDEKILEINNEYLGHDYYTDV 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F ++ GDIV++ + + A + GK +E+ L +IIHG LHL G + Sbjct: 64 ITFDYDE------GDVVNGDIVISLDTVRTNAEMFGKAYEDELYRVIIHGILHLCGLNDK 117 Query: 144 DDKDACVMEGLERSILE 160 + +ME E LE Sbjct: 118 GPGEREIMEKAENKALE 134 >gi|86144117|ref|ZP_01062454.1| hypothetical protein MED217_18401 [Leeuwenhoekiella blandensis MED217] gi|85829379|gb|EAQ47844.1| hypothetical protein MED217_18401 [Leeuwenhoekiella blandensis MED217] Length = 137 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 6/105 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 L VF + +N ++ D T++++F +++ G+I ++ + + A Sbjct: 35 SLGYVFCSDDFLLEINQQFLDHDTLTDIVTFDYTE------GTILNGEIYISTDRVADNA 88 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 +F+ L +IIHG LH+ GY D + M E L Sbjct: 89 KDFNVDFDTELRRVIIHGLLHMCGYGDKTDDEKSNMRKKEDEYLA 133 >gi|303237783|ref|ZP_07324341.1| translation metalloprotein YbeY [Prevotella disiens FB035-09AN] gi|302482008|gb|EFL45045.1| translation metalloprotein YbeY [Prevotella disiens FB035-09AN] Length = 142 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 9/138 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + L + + K + + + + E+ +F D +I +N EY G D T+V++ Sbjct: 9 VKLPKIGKRETTKWIKAVAETHG---KKVGEIGYMFVDDEKILEVNNEYLGHDYYTDVIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GDIV++ + + A GK +E L +IIHG LHL G + Sbjct: 66 FDYCEENELN------GDIVISLDTVRTNAEKFGKTYEEELYRVIIHGILHLCGINDKGP 119 Query: 146 KDACVMEGLERSILEDLG 163 + +ME E L L Sbjct: 120 GEREIMEENENKALAILK 137 >gi|150024116|ref|YP_001294942.1| hypothetical protein FP0002 [Flavobacterium psychrophilum JIP02/86] gi|172048599|sp|A6GVJ9|RRMF_FLAPJ RecName: Full=Probable rRNA maturation factor gi|149770657|emb|CAL42121.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86] Length = 140 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 9/141 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI E + VS++I ++ E++ +F D + + +N +Y D T+V+ Sbjct: 7 EIDFEIREETSYINWVSSVILSE---NKSEGEINYIFCDDNYLLEINQQYLNHDTLTDVI 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SF + GDI ++ E + A+ FE L ++IHG LH GY Sbjct: 64 SFDYSLGDEIH------GDIYISIERVRENADDFKVPFEEELKRVMIHGVLHYCGYKDKS 117 Query: 145 DKDACVMEGLERSILEDLGIN 165 D D +M E L+ + Sbjct: 118 DADELLMRSKEDEKLKLFHVK 138 >gi|261838486|gb|ACX98252.1| hypothetical protein KHP_1056 [Helicobacter pylori 51] Length = 142 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E+ F L+ K V + LV + +N + RG D T+VL Sbjct: 3 EIDNQTPLELDFL-----LLEKIANVLAPTQIIELVLVSDGTMREINRDLRGCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP S LG +V+ + + A LG E+ + L IHG LHLLGYDH Sbjct: 58 SFPLEAIS-----HTPLGSVVINMPLAQTNALKLGHRLEDEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 111 EKDKGEQRQKESELIKAFNLP 131 >gi|302344831|ref|YP_003813184.1| translation metalloprotein YbeY [Prevotella melaninogenica ATCC 25845] gi|302149577|gb|ADK95839.1| translation metalloprotein YbeY [Prevotella melaninogenica ATCC 25845] Length = 142 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 9/138 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + ++ + + + + E+ +F D +I +N EY G D T++++ Sbjct: 9 VKMPKIKKREISRWIKAVAATHG---RKVGEIGYMFVDDEKILEVNNEYLGHDYYTDIIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F ++ GD+V++ + + A + K +E+ L +IIHG LHL G + Sbjct: 66 FDYDEDD------VLNGDLVISLDTVRSNAELFKKSYEDELNRVIIHGILHLCGINDKGP 119 Query: 146 KDACVMEGLERSILEDLG 163 + +ME E L L Sbjct: 120 GEREIMEENENKALALLK 137 >gi|197303388|ref|ZP_03168427.1| hypothetical protein RUMLAC_02110 [Ruminococcus lactaris ATCC 29176] gi|197297386|gb|EDY31947.1| hypothetical protein RUMLAC_02110 [Ruminococcus lactaris ATCC 29176] Length = 165 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 16/134 (11%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--------------- 92 Y E++L+ T++ I +N E RGID+PT+VLSFP Sbjct: 31 YAECPYEAEINLLLTENQEIHEMNLEQRGIDRPTDVLSFPMIEYDAPGDFSVIDEETGDA 90 Query: 93 -SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 + LMLGDIV++ E + +A G + LI H LHL GYDH+++++ M Sbjct: 91 FNPETGELMLGDIVISKEKVLSQAEEYGHSPKREYAFLIAHSMLHLFGYDHMEEEERAEM 150 Query: 152 EGLERSILEDLGIN 165 E +R+I+E +GI Sbjct: 151 EAHQRAIMEKVGIP 164 >gi|297621266|ref|YP_003709403.1| hypothetical protein wcw_1038 [Waddlia chondrophila WSU 86-1044] gi|297376567|gb|ADI38397.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044] Length = 153 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 13/152 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+ I D+ + ++ + K V + + E+S+ F D+ I L Sbjct: 1 MDVHIF-------DQQNDLSISVLQVEKLVIECLKLEGVECD---EVSIQFVDTQMICDL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 + + T+ +SFP +LG++ + + A K + I Sbjct: 51 HHRFFNDPTVTDCISFPIDQ--DGDTGYRVLGEVFVCPKTGIDYAQEHLKNPYEEISLYI 108 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 IHG LHL+GYD + + + M E+ L L Sbjct: 109 IHGLLHLMGYDDIGEDE-PRMREAEKRHLAHL 139 >gi|332879991|ref|ZP_08447675.1| translation metalloprotein YbeY [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681987|gb|EGJ54900.1| translation metalloprotein YbeY [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 138 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 7/122 (5%) Query: 37 AKAVSNLISKGYFVKENIV-ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 V + + + + +++ +F D + +N +Y D T++++F Sbjct: 16 KNKVKQWVKQIALSEGKKIGDINYIFCDDVYLHKINVQYLQHDTLTDIITFDYTE----- 70 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 + DI ++ E + A++ G FE L+ ++ HG LHL GY D+ +M E Sbjct: 71 -GITLNSDIYISIERVRENADIFGVTFEQELLRVLAHGILHLCGYKDKTPADSELMRAKE 129 Query: 156 RS 157 Sbjct: 130 DE 131 >gi|312148985|gb|ADQ29056.1| conserved hypothetical protein [Borrelia burgdorferi N40] Length = 155 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 7/116 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVL 106 + ELS++ D+ I+ LN ++R ++PT+VLSF + DG + + GD+V+ Sbjct: 35 SDFELSVILCDNAYIQELNNKFRNKNEPTDVLSFNYNEHNELNEDLVDGINYKIQGDLVI 94 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILED 161 ++E ++ A E L + IHG LHL+GY H + M L+ +IL++ Sbjct: 95 SFEYLKFSAQEFNVEIYEELQRVTIHGILHLMGYKHETNDFQKESMLILQENILKE 150 >gi|269792677|ref|YP_003317581.1| hypothetical protein Taci_1067 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100312|gb|ACZ19299.1| protein of unknown function UPF0054 [Thermanaerovibrio acidaminovorans DSM 6589] Length = 150 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 3/135 (2%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 L+ E + + + + VE+SL F + + +N +YR +D T+VLSF Sbjct: 13 DLKETLEGAWERFLRE-HRSLIPHQVEGVEVSLSFVEPEAMREVNLKYRQVDSSTDVLSF 71 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII--HGFLHLLGYDHVD 144 P + + L ++ ++ E + L++ HGFLHLLG+DH D Sbjct: 72 PLWEEDGRFSPPVGWRWLPLGDVLVCVQDVEPLGEGDRARGVLLVIHHGFLHLLGFDHGD 131 Query: 145 DKDACVMEGLERSIL 159 ++ M L+ ++ Sbjct: 132 EEQRREMWLLQDELM 146 >gi|15594406|ref|NP_212194.1| putative metalloprotease [Borrelia burgdorferi B31] gi|218249454|ref|YP_002374591.1| hypothetical protein BbuZS7_0061 [Borrelia burgdorferi ZS7] gi|223889176|ref|ZP_03623765.1| conserved hypothetical protein [Borrelia burgdorferi 64b] gi|226320768|ref|ZP_03796324.1| conserved hypothetical protein [Borrelia burgdorferi 29805] gi|226322028|ref|ZP_03797553.1| conserved hypothetical protein [Borrelia burgdorferi Bol26] gi|6686087|sp|O51087|RRMF_BORBU RecName: Full=Probable rRNA maturation factor gi|226734032|sp|B7J0Z6|RRMF_BORBZ RecName: Full=Probable rRNA maturation factor gi|2687941|gb|AAC66448.1| conserved hypothetical protein [Borrelia burgdorferi B31] gi|218164642|gb|ACK74703.1| conserved hypothetical protein [Borrelia burgdorferi ZS7] gi|223885425|gb|EEF56526.1| conserved hypothetical protein [Borrelia burgdorferi 64b] gi|226232618|gb|EEH31372.1| conserved hypothetical protein [Borrelia burgdorferi Bol26] gi|226233823|gb|EEH32548.1| conserved hypothetical protein [Borrelia burgdorferi 29805] Length = 155 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 7/116 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVL 106 + ELS++ D+ I+ LN ++R ++PT+VLSF + DG + + GD+V+ Sbjct: 35 SDFELSVILCDNAYIQELNNKFRNKNEPTDVLSFNYNEHNELNEDLVDGINYKIQGDLVI 94 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILED 161 ++E ++ A E L + IHG LHL+GY H + M L+ +IL++ Sbjct: 95 SFEYLKFSAQEFNVEIYEELQRVTIHGILHLMGYKHETNDFQKEGMLILQENILKE 150 >gi|123965446|ref|YP_001010527.1| metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9515] gi|123199812|gb|ABM71420.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9515] Length = 135 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 2/124 (1%) Query: 41 SNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--AFASSDGCSS 98 N + + I LSL +++ I ++N ++ PT+VLSFP ++ + Sbjct: 11 KNTSFPNFIFDKKIFSLSLQIINNNEISSINQKWMDKSGPTDVLSFPMISDEDTTKNLNF 70 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 + LGD+ ++ E+ ++ + ++ L HGFLHLLG++H DD + M + + Sbjct: 71 IELGDLFISLEMAFQQSLEFDHSIKKEMLWLASHGFLHLLGWEHNDDNELDNMLNFQEYL 130 Query: 159 LEDL 162 + L Sbjct: 131 ISKL 134 >gi|157737127|ref|YP_001489810.1| putative metalloprotease [Arcobacter butzleri RM4018] gi|167016839|sp|A8ET67|RRMF_ARCB4 RecName: Full=Probable rRNA maturation factor gi|157698981|gb|ABV67141.1| conserved hypothetical protein [Arcobacter butzleri RM4018] Length = 140 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 5/110 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ L+ + I+ LN EYR IDKPT+VLSFP F D +LG IV++ + ++ +A Sbjct: 28 DIELIVVKNDEIQELNKEYRNIDKPTDVLSFPMNFEVID---MPLLGSIVISTDFVQEKA 84 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 F L IHG LHLLG+DH D E ++E + Sbjct: 85 KEFKHSFNEEFTLLFIHGLLHLLGFDHEIDNGEH--RLKEEELIEKFKLP 132 >gi|326798706|ref|YP_004316525.1| metalloprotease ybeY [Sphingobacterium sp. 21] gi|326549470|gb|ADZ77855.1| metalloprotease ybeY [Sphingobacterium sp. 21] Length = 144 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 14/154 (9%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 +P + E + I + L + A++N E+S +F + Sbjct: 1 MPSATVNFFTEEIKYT--IKNKLLLKQWIKDAITN-------EGLKPGEISFIFCSDEYL 51 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 +N EY D T++++F + + ++ GDI ++ + I+ A + + L Sbjct: 52 HKINVEYLNHDTYTDIITFDNSEDEN-----VIAGDIFISIDRIKENAKSFLVKEVDELH 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 +IIHG LHL GY D M E L Sbjct: 107 RVIIHGILHLCGYLDKKPVDKKRMTEKENEYLSK 140 >gi|283955287|ref|ZP_06372787.1| hypothetical protein C414_000440025 [Campylobacter jejuni subsp. jejuni 414] gi|283793201|gb|EFC31970.1| hypothetical protein C414_000440025 [Campylobacter jejuni subsp. jejuni 414] Length = 136 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 8/129 (6%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 + L S F+ VEL +F D+ ++ +N E R DK T+VLSFP Sbjct: 5 NEKCEFLESIASFLSSKDVEL--IFVDNKEMQEINLEQRKQDKTTDVLSFPLENIDEK-- 60 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 L LG +V+ ++ + +A LG +E + L IH LHLLG+DH D M E+ Sbjct: 61 --LPLGSVVINVDLAKEKAKELGHSYEEEVSLLFIHAMLHLLGFDHEVDN--GEMREKEK 116 Query: 157 SILEDLGIN 165 ++E + Sbjct: 117 ELIEHFNLP 125 >gi|154174537|ref|YP_001407912.1| putative metalloprotease [Campylobacter curvus 525.92] gi|112803387|gb|EAU00731.1| conserved hypothetical protein [Campylobacter curvus 525.92] Length = 135 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 7/112 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 ++ L F +S + +N + RG DK T+VLSFP +G IV+ +++ Sbjct: 21 PGDIELSFVNSEEMREINLKERGFDKTTDVLSFPLEL-----VLHAPIGCIVINTDLVMQ 75 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A LG ++ L IHG LH+LG+DH +KD+ M E I+ + Sbjct: 76 KAAQLGHTNDDETALLFIHGLLHVLGFDH--EKDSGQMREKEVQIITKFKLP 125 >gi|71894404|ref|YP_278512.1| hypothetical protein MS53_0389 [Mycoplasma synoviae 53] Length = 159 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 2/156 (1%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + L + N + + + N +K YF + L + S+ Sbjct: 1 MIKLMVKNTNLINISTYKNDVIYFEKEMHEILNNFAK-YFKINKQIILDVSIVSSYTSRK 59 Query: 70 LNFEYRGIDKPTNVLSFPTAFASS-DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LNFEYR DK T++LSF D L LG++V+ I+ +A + + ++ Sbjct: 60 LNFEYRQKDKTTDILSFGYDDFDLYDKMPFLNLGELVICNNKIKKQAIIFNHSIKREFLY 119 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L HG +HL GYDH +K+ M+ + SI L I Sbjct: 120 LFTHGLVHLYGYDHQSEKEKKEMDFIVDSIFNPLKI 155 >gi|255690276|ref|ZP_05413951.1| putative metalloprotease [Bacteroides finegoldii DSM 17565] gi|260624179|gb|EEX47050.1| putative metalloprotease [Bacteroides finegoldii DSM 17565] Length = 139 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 58/135 (42%), Gaps = 9/135 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + + + + + + E++ +F +I +N +Y D T++++ Sbjct: 10 VKMPDIKKRETTEWIKAVAASYG---KRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + I A G ++N L +IIHG LHL G + Sbjct: 67 FDYCE------GDRLSGDLFISLDTIRTNAEQFGASYDNELHRVIIHGILHLCGINDKGP 120 Query: 146 KDACVMEGLERSILE 160 + +ME E L Sbjct: 121 GEREIMEAAENKALA 135 >gi|223940463|ref|ZP_03632314.1| protein of unknown function UPF0054 [bacterium Ellin514] gi|223890866|gb|EEF57376.1| protein of unknown function UPF0054 [bacterium Ellin514] Length = 159 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 57/132 (43%), Gaps = 5/132 (3%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 + A LIS ++++ + +N ++ T+V++F + Sbjct: 16 IDRRWLRWATKELISDLLHF--EDFDVTIHLVGEREMTRINEKHLQHAGSTDVITFDYSD 73 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 + S ++G++ + + ++A +++ + I+HG LHL GYD ++ Sbjct: 74 SP---GSEPLIGELFICVDEALVQAIRFKTTWQSETMRYIVHGLLHLKGYDDLETTARRK 130 Query: 151 MEGLERSILEDL 162 M+ E +L++L Sbjct: 131 MKREENKLLKEL 142 >gi|291514792|emb|CBK64002.1| conserved hypothetical protein TIGR00043 [Alistipes shahii WAL 8301] Length = 145 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 3/105 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 +++ +F + R+ +N +Y G D T+V++F + + ++ GDI + E + A Sbjct: 37 DVTYIFCSAQRLLEMNRQYLGHDYFTDVITFDYSDRK---GARIVSGDIFIDVETVADNA 93 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 G + +++HG LHL G + M E L+ Sbjct: 94 RQYGATTLQEMRRVVVHGILHLCGQGDKTPRTNAQMHRKEDKYLK 138 >gi|208435054|ref|YP_002266720.1| hypothetical protein HPG27_1104 [Helicobacter pylori G27] gi|226701639|sp|B5Z8F5|RRMF_HELPG RecName: Full=Probable rRNA maturation factor gi|208432983|gb|ACI27854.1| hypothetical protein HPG27_1104 [Helicobacter pylori G27] Length = 142 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F L+ K V + L+ + +N + RG D T+VL Sbjct: 3 EIDNQTPLESDFL-----LLEKIANVLAPTQIIELILVSGETMREINRDLRGCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP LG +V+ + + A LG E + L IHG LHLLGYDH Sbjct: 58 SFPLEAIP-----HTPLGSVVINAPLAQTNALKLGHRLEEEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 111 EKDKGEQRQKESELIKIFNLP 131 >gi|288801762|ref|ZP_06407204.1| metalloprotease [Prevotella melaninogenica D18] gi|288335804|gb|EFC74237.1| metalloprotease [Prevotella melaninogenica D18] Length = 143 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 9/138 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + ++ + + + + E+ +F D +I +N EY G D T++++ Sbjct: 9 VKMPKIKKREISRWIKAVAATHG---RKVGEIGYMFVDDEKILEVNNEYLGHDYYTDIIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F ++ GD+V++ + + A + K +E+ L +IIHG LHL G + Sbjct: 66 FDYDEDD------VLNGDLVISLDTVRSNAELFKKSYEDELHRVIIHGILHLCGINDKGP 119 Query: 146 KDACVMEGLERSILEDLG 163 + +ME E L L Sbjct: 120 GEREIMEENENKALALLK 137 >gi|222151469|ref|YP_002560625.1| hypothetical protein MCCL_1222 [Macrococcus caseolyticus JCSC5402] gi|254799990|sp|B9E6W1|RRMF_MACCJ RecName: Full=Probable rRNA maturation factor gi|222120594|dbj|BAH17929.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 154 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 11/158 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L + +++ D HL + ++ A I + E+++ F D + I+ Sbjct: 1 MLTVD-FIDDNAQIDAKHLPEIERLLIFAAEQEGI-------DEEAEVAVSFVDENEIQA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGC---SSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 +N YR D T+V+SF D +LGDI++ + +A G FE L Sbjct: 53 INKAYRNKDAVTDVISFALEEGEDDFEMSDEPRVLGDIIICVKRALEQAEEYGHSFEREL 112 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L +HG LHLLGYDH+++ D M G + IL G+ Sbjct: 113 GFLSLHGLLHLLGYDHMNESDEARMFGRQDEILNAFGL 150 >gi|163840663|ref|YP_001625068.1| putative metalloprotease [Renibacterium salmoninarum ATCC 33209] gi|189039400|sp|A9WQS5|RRMF_RENSM RecName: Full=Probable rRNA maturation factor gi|162954139|gb|ABY23654.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC 33209] Length = 157 Score = 78.9 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 14/156 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + E L L VF K ELS++ D +E L Sbjct: 1 MSVEVNNESGVELPEAELVRLSRFVFEK----------LYLHPQTELSIILADREAMEKL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM----LGDIVLAYEIIEIEANVLGKEFENHL 126 + E+ T+VLSFP S LGDIV+ ++ + +A G E+ L Sbjct: 51 HVEWMYEPGATDVLSFPMDELRPGTVSRPAPAGLLGDIVICPQVAQEQAQAGGHSVEDEL 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L HG LHLLGYDH D ++ M GL+R +L Sbjct: 111 LLLTTHGLLHLLGYDHEDPEEKAEMFGLQRELLTSF 146 >gi|298483806|ref|ZP_07001978.1| metalloprotease [Bacteroides sp. D22] gi|298269993|gb|EFI11582.1| metalloprotease [Bacteroides sp. D22] Length = 139 Score = 78.9 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 59/135 (43%), Gaps = 9/135 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + + + + + + E++ +F +I +N +Y D T++++ Sbjct: 10 VKMPDIKKRETTEWIKAVAASYG---KRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + I A G +EN L +IIHG LHL G + Sbjct: 67 FDYCE------GDRLSGDLFISLDTIRTNAEQFGTSYENELHRVIIHGILHLCGINDKGP 120 Query: 146 KDACVMEGLERSILE 160 + +MEG E L Sbjct: 121 GEREIMEGAENKALS 135 >gi|301311742|ref|ZP_07217667.1| putative metalloprotease [Bacteroides sp. 20_3] gi|300830302|gb|EFK60947.1| putative metalloprotease [Bacteroides sp. 20_3] Length = 143 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 9/137 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 I L + + + V + + ++S +F +I +N +Y D T++++ Sbjct: 10 IELPAIKKRAVSGWVKAV---AETYGKKTGDISYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + + A ++ L IIHG LHL G + Sbjct: 67 FDYTEGNKIS------GDLFISLDTVRTNAETFHTDYNEELHRTIIHGILHLCGINDKGP 120 Query: 146 KDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 121 GEREIMEENENRALAIL 137 >gi|260591891|ref|ZP_05857349.1| putative metalloprotease [Prevotella veroralis F0319] gi|260536175|gb|EEX18792.1| putative metalloprotease [Prevotella veroralis F0319] Length = 143 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 9/138 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + ++ + + + + E+ +F D +I +N EY G D T++++ Sbjct: 9 VKMPKIRKRDTSRWIKAVAATYG---RKVGEIGYMFVDDEKILEVNNEYLGHDYYTDIIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F ++ GD+V++ + + A + GK +E L +IIHG LHL G + Sbjct: 66 FDYDE------GDVLNGDLVISLDTVRSNAELFGKLYEEELFRVIIHGILHLCGINDKGP 119 Query: 146 KDACVMEGLERSILEDLG 163 + +ME E L L Sbjct: 120 GEREIMEENENKALALLK 137 >gi|160882931|ref|ZP_02063934.1| hypothetical protein BACOVA_00893 [Bacteroides ovatus ATCC 8483] gi|260172638|ref|ZP_05759050.1| hypothetical protein BacD2_12296 [Bacteroides sp. D2] gi|315920928|ref|ZP_07917168.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156111614|gb|EDO13359.1| hypothetical protein BACOVA_00893 [Bacteroides ovatus ATCC 8483] gi|313694803|gb|EFS31638.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 138 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 9/137 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + + + + + + E++ +F +I +N +Y D T++++ Sbjct: 10 VKMPDIKKRETTEWIKTVAASYG---KRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + I A G +E+ L +IIHG LHL G + Sbjct: 67 FDYCE------GDRLSGDLFISLDTIRTNAEQFGASYEDELHRVIIHGILHLCGINDKGP 120 Query: 146 KDACVMEGLERSILEDL 162 + VME E L L Sbjct: 121 GEREVMEAAENKALGML 137 >gi|268679311|ref|YP_003303742.1| hypothetical protein Sdel_0671 [Sulfurospirillum deleyianum DSM 6946] gi|268617342|gb|ACZ11707.1| protein of unknown function UPF0054 [Sulfurospirillum deleyianum DSM 6946] Length = 140 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 44/110 (40%), Positives = 61/110 (55%), Gaps = 7/110 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ LVF +S + LN E+RG+DK T+VLSFP LG IV+ YE + +A Sbjct: 28 EVELVFINSADMHALNLEHRGVDKTTDVLSFPIDD-----FPHAPLGSIVINYEYAKEKA 82 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LG E+ + L IHG LHLLGYDH + D M E++++E + Sbjct: 83 LALGHSHEDEITLLFIHGMLHLLGYDH--EVDQGEMREKEKALIEQYALP 130 >gi|148270413|ref|YP_001244873.1| hypothetical protein Tpet_1283 [Thermotoga petrophila RKU-1] gi|281412720|ref|YP_003346799.1| protein of unknown function UPF0054 [Thermotoga naphthophila RKU-10] gi|166200326|sp|A5IM74|RRMF_THEP1 RecName: Full=Probable rRNA maturation factor gi|147735957|gb|ABQ47297.1| protein of unknown function UPF0054 [Thermotoga petrophila RKU-1] gi|281373823|gb|ADA67385.1| protein of unknown function UPF0054 [Thermotoga naphthophila RKU-10] Length = 150 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 8/123 (6%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 V + + + V ++++ I+ LN ++R D+PT+VL+F Sbjct: 17 VKEKLEEIVKKEIGDVHVNVILVSEDEIKELNQQFRSHDQPTDVLTFLLMEED------- 69 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSI 158 + G+I + I+E A FE L+ ++IHG LHL GYDH +D+ + M ++ Sbjct: 70 VYGEIYVCPMIVEENAKEFSNTFEKELLEVVIHGILHLAGYDHEFEDRKSKEMFEKQKKY 129 Query: 159 LED 161 +E+ Sbjct: 130 VEE 132 >gi|307298543|ref|ZP_07578346.1| protein of unknown function UPF0054 [Thermotogales bacterium mesG1.Ag.4.2] gi|306915708|gb|EFN46092.1| protein of unknown function UPF0054 [Thermotogales bacterium mesG1.Ag.4.2] Length = 142 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 16/153 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++QI + + +E + + E V + I L+L+FTD I ++ Sbjct: 1 MEIQIQNKTSKKIEESRISNIVEKVVKAELGE---------RKIGMLNLLFTDDSEIRSI 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+R D+PT+VLSF G ++GDIV++ E I +A G FE L +++ Sbjct: 52 NKEFRHRDEPTDVLSFQY------GLEEEIVGDIVISLERISEQAGEFGNSFEEELYYIL 105 Query: 131 IHGFLHLLGYDHVD-DKDACVMEGLERSILEDL 162 IHG LH+LG+ H D + + L+R+ + Sbjct: 106 IHGVLHVLGHTHEGYDDEGEEIFSLQRNYYKRF 138 >gi|262383157|ref|ZP_06076294.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296035|gb|EEY83966.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 143 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 9/137 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 I L + + + V + + ++S +F +I +N +Y D T++++ Sbjct: 10 IELPAIKKRAVSGWVKAV---AETYGKKTGDISYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + + A ++ L IIHG LHL G + Sbjct: 67 FDYTEGNKIS------GDLFISLDTVRTNAETFHTDYNEELHRTIIHGILHLCGINDKGP 120 Query: 146 KDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 121 GEREIMEENENRALAIL 137 >gi|154504368|ref|ZP_02041106.1| hypothetical protein RUMGNA_01872 [Ruminococcus gnavus ATCC 29149] gi|153795297|gb|EDN77717.1| hypothetical protein RUMGNA_01872 [Ruminococcus gnavus ATCC 29149] Length = 165 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 15/133 (11%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS-------------- 92 Y E++L+ T I +N E+R ID+ T+VLSFP Sbjct: 30 EYEGCPYEAEINLLLTTDDEIHRMNEEFRQIDRATDVLSFPMLEYETPGDFSFVEEEAEA 89 Query: 93 -SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 + LMLGDIV++ E + +A G + LI H LHL GYDH+++++ VM Sbjct: 90 FNPESGELMLGDIVISKEKVLAQAEAYGHSPKREFAFLIAHSMLHLFGYDHMEEEERLVM 149 Query: 152 EGLERSILEDLGI 164 E +R I+E + I Sbjct: 150 EERQREIMEKVQI 162 >gi|315636838|ref|ZP_07892063.1| metalloprotease [Arcobacter butzleri JV22] gi|315478892|gb|EFU69600.1| metalloprotease [Arcobacter butzleri JV22] Length = 140 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 5/126 (3%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + L + ++ L+ + I+ LN EYR IDKPT+VLSFP F D Sbjct: 12 IDTLNLENIANTLTKKDIELIVVKNDEIQELNKEYRNIDKPTDVLSFPMNFEVID---MP 68 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LG IV++ + ++ +A F L IHG LHLLG+DH D E ++ Sbjct: 69 LLGSIVISTDFVQEKAKEFKHSFNEEFTLLFIHGLLHLLGFDHEIDNGEH--RLKEEELI 126 Query: 160 EDLGIN 165 E + Sbjct: 127 EKFKLP 132 >gi|326335988|ref|ZP_08202165.1| metal dependent hydrolase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691952|gb|EGD33914.1| metal dependent hydrolase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 138 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 48/111 (43%), Gaps = 6/111 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + +++ +F + + +N +Y D T++++F G + + DI ++ E + Sbjct: 32 KKEGDINYIFCNDEYLHKINVDYLQHDTLTDIITFDY------GKDNTLSSDIYISVERV 85 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + A G + L+ ++ HG LHL GY + + M E + Sbjct: 86 KENAQEYGVDLPTELLRVMAHGILHLCGYKDKTPEQSQEMRQKEEEKMALF 136 >gi|255037549|ref|YP_003088170.1| hypothetical protein Dfer_3801 [Dyadobacter fermentans DSM 18053] gi|254950305|gb|ACT95005.1| protein of unknown function UPF0054 [Dyadobacter fermentans DSM 18053] Length = 146 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 61/151 (40%), Gaps = 12/151 (7%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVE------LSLVFTDSHRIETLN 71 ++ W + E + K V+ L +K + + E L+ +F + +N Sbjct: 2 DDGAWLSNMVSF-FSEDIDFKVVNPLKTKKWLKNASNSEGYEVSQLNYIFCSDEYLLEIN 60 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +Y D T++++F + + + GDI ++ + + A +F+ + ++I Sbjct: 61 KQYLDHDYFTDIITFDNSEEDN-----QLEGDIYVSVDRVRENAATFHTDFDTEMRRVLI 115 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 HG LHL G+D + M E L Sbjct: 116 HGLLHLAGHDDTSEALKTAMRAKEDEYLRLF 146 >gi|304373107|ref|YP_003856316.1| Putative metalloprotease [Mycoplasma hyorhinis HUB-1] gi|304309298|gb|ADM21778.1| Putative metalloprotease [Mycoplasma hyorhinis HUB-1] gi|330723268|gb|AEC45638.1| Putative metalloprotease [Mycoplasma hyorhinis MCLD] Length = 150 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 2/130 (1%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-AFASSDG 95 + N+I K + + L D ++ F+Y+G D+ T++LSFP S+ Sbjct: 21 FNLILNIIEKEEKFQ-KPLSLDFTLIDDEQMRKYYFQYKGKDRTTDILSFPFVNSFSTSF 79 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 LG+I+++Y+ I+ +A G +L HG HLLGYDH+ ++ M Sbjct: 80 MKEKFLGEILISYQKIQQQAKEYGHSVTREFCYLFTHGVYHLLGYDHISLEEEKQMNKKV 139 Query: 156 RSILEDLGIN 165 I++ L I Sbjct: 140 DKIMKLLQIE 149 >gi|257463002|ref|ZP_05627405.1| metal-binding protein [Fusobacterium sp. D12] gi|317060616|ref|ZP_07925101.1| metal-binding protein [Fusobacterium sp. D12] gi|313686292|gb|EFS23127.1| metal-binding protein [Fusobacterium sp. D12] Length = 164 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 4/156 (2%) Query: 13 LQIAVENALWGDEIHLRTLCEV---VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++++VE ++ + E V A+ + ++ + LSL+ T +H+I+ Sbjct: 5 VEVSVEYEKDDYAEFIQEVTENNNEVLAEYIEEVLHMEKVESPLPLYLSLLLTGNHQIQV 64 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-LGDIVLAYEIIEIEANVLGKEFENHLVH 128 +N E+R D PT+V+SF LGDIV++ E + +A F + Sbjct: 65 INREFRQKDSPTDVISFAYHENEDFLVGPYDTLGDIVISLERVGEQAKEYNHSFTREFYY 124 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ HG LH+LGYDH+D+ D M E IL G Sbjct: 125 VLTHGILHILGYDHIDENDKREMREREEEILGHFGY 160 >gi|308177462|ref|YP_003916868.1| metalloprotease [Arthrobacter arilaitensis Re117] gi|307744925|emb|CBT75897.1| putative metalloprotease [Arthrobacter arilaitensis Re117] Length = 157 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 15/162 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E D + L E V E+S+VF D + L Sbjct: 1 MSIEVNNETDYEVDLKDVNALAESVLQAM----------FLHPETEVSVVFIDEDAMSAL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD----GCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + E+ ++ PT+V+SFP + +LGDIV+ I E +A G + + Sbjct: 51 HVEWMDLEGPTDVMSFPMDELRPGTAGAPGENGILGDIVICPSIAEAQAKAGGHSTHDEI 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL-GINDP 167 + L HG LHL+G+DH++ + M GL+R +LE G P Sbjct: 111 LLLTTHGLLHLMGFDHMEPAEKEEMFGLQRQLLESYTGRPAP 152 >gi|187917939|ref|YP_001883502.1| putative metalloprotease [Borrelia hermsii DAH] gi|238689307|sp|B2S1P5|RRMF_BORHD RecName: Full=Probable rRNA maturation factor gi|119860787|gb|AAX16582.1| hypothetical metal-binding protein [Borrelia hermsii DAH] Length = 148 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 ++S F+ ELS+V ++ I+ LN +R +PT+VLSF + + + G Sbjct: 25 ILSVLNFLCIEEYELSVVLCNNEYIQKLNSAFRQKSEPTDVLSFNYLEE-NGQINHKIQG 83 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILED 161 D++++ E +E + E + L IHG LHL+GY H + M ++ +L + Sbjct: 84 DLIISLEYLEFSSLEFNVEMYDELQRNTIHGILHLIGYTHETNDFQNEEMLVIQEKVLRE 143 >gi|224531809|ref|ZP_03672441.1| conserved hypothetical protein [Borrelia valaisiana VS116] gi|224511274|gb|EEF81680.1| conserved hypothetical protein [Borrelia valaisiana VS116] Length = 155 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 7/126 (5%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------DGC 96 ++S + + ELS++ D+ I+ LN ++R ++PT+VLSF + DG Sbjct: 25 ILSVLNALSISDFELSVILCDNIYIQKLNNKFRNKNEPTDVLSFNYNEHNELTGDLVDGI 84 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV-MEGLE 155 + + GD+++++E ++ A E L + IHG LHL+GY H + M L+ Sbjct: 85 NYKIQGDLIISFEYLKFSAQEFNVEIYEELQRVTIHGILHLMGYKHETNDFKKEGMLILQ 144 Query: 156 RSILED 161 +IL Sbjct: 145 ENILRK 150 >gi|187734775|ref|YP_001876887.1| protein of unknown function UPF0054 [Akkermansia muciniphila ATCC BAA-835] gi|187424827|gb|ACD04106.1| protein of unknown function UPF0054 [Akkermansia muciniphila ATCC BAA-835] Length = 165 Score = 78.1 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 45/108 (41%), Gaps = 9/108 (8%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ + I ++ + T+V++FP +G+I+++++ +A Sbjct: 51 EVEISVVSDDVIRDVHARFLNDPTATDVITFPHGDG---------IGEIIVSFDTAIRQA 101 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 + + L ++HG LHL GY + ++ M + ++ G Sbjct: 102 SEFREPVFRELFRYMVHGLLHLHGYIDTEPEERERMFSCQEPLVRKFG 149 >gi|257791393|ref|YP_003181999.1| hypothetical protein Elen_1642 [Eggerthella lenta DSM 2243] gi|317490531|ref|ZP_07949009.1| hypothetical protein HMPREF1023_02709 [Eggerthella sp. 1_3_56FAA] gi|325831379|ref|ZP_08164633.1| translation metalloprotein YbeY [Eggerthella sp. HGA1] gi|257475290|gb|ACV55610.1| protein of unknown function UPF0054 [Eggerthella lenta DSM 2243] gi|316910382|gb|EFV32013.1| hypothetical protein HMPREF1023_02709 [Eggerthella sp. 1_3_56FAA] gi|325486633|gb|EGC89081.1| translation metalloprotein YbeY [Eggerthella sp. HGA1] Length = 153 Score = 78.1 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 73/158 (46%), Gaps = 18/158 (11%) Query: 11 LDLQIAVENALWG-DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D+QI + +++ L L + V A+ K E+S+ F I Sbjct: 1 MDIQINYDYRKEDLEKLPLHELTQFVLAR----------EDKPFNTEVSISFVTDEAIAE 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSD-------GCSSLMLGDIVLAYEIIEIEANVLGKEF 122 LN YR + PT+VLSF D LGD+V+A ++ + G F Sbjct: 51 LNERYRHKEGPTDVLSFECDGVDDDLSAMTLAEDPVYELGDVVIAPDVASRQTREFGTTF 110 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E + L++HG LHL GYDH++D +A VME E ILE Sbjct: 111 EEEISLLLVHGLLHLCGYDHIEDDEAEVMEKREAEILE 148 >gi|226492765|ref|NP_001146569.1| hypothetical protein LOC100280165 [Zea mays] gi|219887855|gb|ACL54302.1| unknown [Zea mays] Length = 313 Score = 78.1 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 1/96 (1%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI 110 K + VE+S++ + + I+ LN E+R +D T++LS + + LMLGDIV++ E Sbjct: 173 KYDKVEVSVLLCNDNFIQDLNKEWRDVDCATDILSM-SQYIPDLDVPILMLGDIVISVEA 231 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 E +A G + + L++ G LHLLG+ H Sbjct: 232 AERQAGEKGVTLLDEVRVLVVRGILHLLGFQHESSN 267 >gi|224536891|ref|ZP_03677430.1| hypothetical protein BACCELL_01767 [Bacteroides cellulosilyticus DSM 14838] gi|224521479|gb|EEF90584.1| hypothetical protein BACCELL_01767 [Bacteroides cellulosilyticus DSM 14838] Length = 136 Score = 78.1 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 6/111 (5%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYE 109 K+ + E++ +F +I +N +Y D T++++F + + GD+ ++ + Sbjct: 30 YKKRVGEIAYIFCSDEKILEVNRQYLQHDYYTDIITFDYCE------GNRLSGDLFISLD 83 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + A G ++E L +IIHG LHL G + + +ME E L Sbjct: 84 TVRTNAEQFGSDYETELHRVIIHGILHLCGINDKGPGEREIMEAAENKALA 134 >gi|163786964|ref|ZP_02181412.1| glutamyl-tRNA synthetase [Flavobacteriales bacterium ALC-1] gi|163789246|ref|ZP_02183688.1| glutamyl-tRNA synthetase [Flavobacteriales bacterium ALC-1] gi|159875461|gb|EDP69523.1| glutamyl-tRNA synthetase [Flavobacteriales bacterium ALC-1] gi|159878824|gb|EDP72880.1| glutamyl-tRNA synthetase [Flavobacteriales bacterium ALC-1] Length = 136 Score = 78.1 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 13/137 (9%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 ++ +K +S E++ +F + LN ++ D T+++ Sbjct: 11 KLDNSEQISKWISKTISEENC-------KEGEINYIFCSDEYLHRLNVDFLNHDTLTDII 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SF + GD+ ++ + ++ A FE+ + +IIHG LH GY Sbjct: 64 SFDYSVGKELH------GDVYISVDRVKENAFEFKTAFEDEISRVIIHGVLHYCGYKDKS 117 Query: 145 DKDACVMEGLERSILED 161 ++D +M E L Sbjct: 118 EEDEMLMRLKEDYYLNK 134 >gi|258648907|ref|ZP_05736376.1| putative metalloprotease [Prevotella tannerae ATCC 51259] gi|260850939|gb|EEX70808.1| putative metalloprotease [Prevotella tannerae ATCC 51259] Length = 139 Score = 78.1 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 6/109 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + E++ +F D +I +N +Y D T++++F +++ GD+ ++ + + Sbjct: 32 KEVGEIAYIFCDDEKILEVNQQYLNHDYYTDIITFDYTE------GNVLSGDLFISLDTV 85 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 A + L +IIHG LHL G + + +ME E L Sbjct: 86 RTNAEQRQISYREELDRVIIHGILHLCGINDKGPGERQLMEAAENKALN 134 >gi|146298765|ref|YP_001193356.1| hypothetical protein Fjoh_1004 [Flavobacterium johnsoniae UW101] gi|189038538|sp|A5FL87|RRMF_FLAJ1 RecName: Full=Probable rRNA maturation factor gi|146153183|gb|ABQ04037.1| protein of unknown function UPF0054 [Flavobacterium johnsoniae UW101] Length = 139 Score = 78.1 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 9/138 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E E F +S +I ++N E++ +F D + +N EY D T+++ Sbjct: 7 ETEFSLDNEQAFTDWLSAVIVSE---EKNEGEINYIFCDDEYLHKINVEYLNHDTLTDII 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SF + + GDI ++ E +E A FE L ++ HG LH GY Sbjct: 64 SFDY------TVGNEISGDIFVSVERVEDNAKDFNVSFEEELKRVLAHGILHYCGYKDKS 117 Query: 145 DKDACVMEGLERSILEDL 162 D DA +M E + Sbjct: 118 DADAELMRSKEDEKIAMF 135 >gi|325859868|ref|ZP_08172998.1| translation metalloprotein YbeY [Prevotella denticola CRIS 18C-A] gi|327312920|ref|YP_004328357.1| translation metalloprotein YbeY [Prevotella denticola F0289] gi|325482794|gb|EGC85797.1| translation metalloprotein YbeY [Prevotella denticola CRIS 18C-A] gi|326946199|gb|AEA22084.1| translation metalloprotein YbeY [Prevotella denticola F0289] Length = 139 Score = 78.1 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 9/137 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + ++ + + + + E+ +F +I +N EY G D T++++ Sbjct: 9 VKMPRIRKRDTSRWIKAVAATYG---RKVGEIGYMFVGDEKILEINNEYLGHDYYTDIIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F +++ GD+V++ + + A + K +E+ L +IIHG LHL G + Sbjct: 66 FDYDE------GNVLNGDLVISLDTVRSNAELFHKSYEDELNRVIIHGILHLCGINDKGP 119 Query: 146 KDACVMEGLERSILEDL 162 + +ME E LE L Sbjct: 120 GEREIMEENENKALELL 136 >gi|288800393|ref|ZP_06405851.1| metalloprotease [Prevotella sp. oral taxon 299 str. F0039] gi|288332606|gb|EFC71086.1| metalloprotease [Prevotella sp. oral taxon 299 str. F0039] Length = 138 Score = 78.1 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 60/138 (43%), Gaps = 9/138 (6%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 +++ + + + + + + + ++ +F D +I +N EY D T+ Sbjct: 6 SEKVKMPKIKKRETTAWIKQV---AQSYGKKVGDIGYMFVDDEKILEVNREYLQHDYYTD 62 Query: 83 VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +++F GD+V++ + + A + GK +E L +IIHG LHL+G + Sbjct: 63 IITFDYCENDELN------GDLVISLDTVRTNAELFGKTYEEELYRVIIHGVLHLIGIND 116 Query: 143 VDDKDACVMEGLERSILE 160 + +ME E L Sbjct: 117 KGPGEREIMEAAENKALA 134 >gi|51598321|ref|YP_072509.1| putative metalloprotease [Borrelia garinii PBi] gi|59799021|sp|Q662V4|RRMF_BORGA RecName: Full=Probable rRNA maturation factor gi|51572892|gb|AAU06917.1| conserved hypothetical protein [Borrelia garinii PBi] Length = 152 Score = 78.1 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 4/123 (3%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML- 101 ++S + + ELS++ D+ I+ LN ++R ++PT+VLSF + + Sbjct: 25 ILSVLNTLSISDFELSVILCDNVYIQKLNNKFRNKNEPTDVLSFNYNELNEGLVGGINYK 84 Query: 102 --GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSI 158 GD+++++E ++ A E L + IHG LHL+G++H + M L+ ++ Sbjct: 85 IQGDLIISFEYLKFSAQEFNVEIYEELQRVTIHGILHLMGHNHETNDFQKEGMLILQENV 144 Query: 159 LED 161 L Sbjct: 145 LRK 147 >gi|254458014|ref|ZP_05071441.1| conserved hypothetical protein TIGR00043 [Campylobacterales bacterium GD 1] gi|207085407|gb|EDZ62692.1| conserved hypothetical protein TIGR00043 [Campylobacterales bacterium GD 1] Length = 139 Score = 78.1 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 7/126 (5%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 V E+ L+ T I+ +N E+R ID PT+VLSFP Sbjct: 12 VDEAFLNKIASIFTDKEIELIITSKDEIKEINKEHRNIDAPTDVLSFPYVE-----MPMS 66 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 LG IV++ +E + LG ++ L L IHG LHLLG+DH + D M E ++ Sbjct: 67 PLGSIVISSAHVEELSRELGHTQDDELALLFIHGLLHLLGFDH--EVDTGEMREEEARLI 124 Query: 160 EDLGIN 165 ++ + Sbjct: 125 KEFDLP 130 >gi|110598628|ref|ZP_01386894.1| Protein of unknown function UPF0054 [Chlorobium ferrooxidans DSM 13031] gi|110339740|gb|EAT58249.1| Protein of unknown function UPF0054 [Chlorobium ferrooxidans DSM 13031] Length = 149 Score = 78.1 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 6/103 (5%) Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 V+ + I+ +N E+ G D PT+ ++F + G+ ++ +++ A Sbjct: 50 VYCGNKMIQRINREFLGHDYPTDTVTFRYSKDREVD------GEFYISLDVVRENAARFD 103 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +F L+ + IH LHL+GYD ++ M+ E L L Sbjct: 104 ADFLQELLRVTIHSALHLIGYDDQSPEERAGMQEKEAFYLARL 146 >gi|323457282|gb|EGB13148.1| hypothetical protein AURANDRAFT_18863 [Aureococcus anophagefferens] Length = 213 Score = 78.1 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 27/135 (20%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS----------LMLG 102 + ++ + T I N +RG+ K T++LSFP + G L LG Sbjct: 69 SEFDVGIWLTTDATIRKYNTRFRGMRKSTDILSFPFHDELAPGALPDAVDRDDEDDLNLG 128 Query: 103 DIVLAYEIIEIEANVLGK-----------------EFENHLVHLIIHGFLHLLGYDHVDD 145 D+V++ + A G + E + L++HG HLL YDH D Sbjct: 129 DMVVSVPYVRRRAEKDGGRDHAPGRGVAAAMAPVADVEERIHMLLVHGLCHLLNYDHETD 188 Query: 146 KDACVMEGLERSILE 160 + M LE +LE Sbjct: 189 DEFEDMVALEDELLE 203 >gi|317012939|gb|ADU83547.1| putative metalloprotease [Helicobacter pylori Lithuania75] Length = 142 Score = 78.1 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 59/141 (41%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F L+ K V + LV + +N + RG D T+VL Sbjct: 3 EIDNQTPLESDFL-----LLEKIANVLAPTQIIELVLVSGETMREINRDLRGCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP LG +V+ + + A LG E + L IHG LHLLGYDH Sbjct: 58 SFPLEAIP-----HTPLGSVVINAPLAQENALKLGHRLEEEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 111 EKDKGEQRQKESELIKAFDLP 131 >gi|193215488|ref|YP_001996687.1| hypothetical protein Ctha_1783 [Chloroherpeton thalassium ATCC 35110] gi|238692691|sp|B3QTP2|RRMF_CHLT3 RecName: Full=Probable rRNA maturation factor gi|193088965|gb|ACF14240.1| protein of unknown function UPF0054 [Chloroherpeton thalassium ATCC 35110] Length = 141 Score = 78.1 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 9/139 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 + + L E KA+ ++ E E+S V+ I +N E+ D PT+ Sbjct: 6 SKTVKQELPEEKIRKAIELVLQGEKCEAE---EISAVYCGDRLIRKINIEHLAHDYPTDT 62 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +SF + + G+ ++ + + A FEN L+ + IH LHL+G++ Sbjct: 63 ISFRLN------SGNAIEGEFYISCDTVRRNAQEYESSFENELLRVTIHSVLHLIGFEDQ 116 Query: 144 DDKDACVMEGLERSILEDL 162 M E L L Sbjct: 117 SAAQKAEMTQKENRYLAAL 135 >gi|189499926|ref|YP_001959396.1| hypothetical protein Cphamn1_0971 [Chlorobium phaeobacteroides BS1] gi|238692296|sp|B3EPY3|RRMF_CHLPB RecName: Full=Probable rRNA maturation factor gi|189495367|gb|ACE03915.1| protein of unknown function UPF0054 [Chlorobium phaeobacteroides BS1] Length = 138 Score = 78.1 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 9/135 (6%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 R + E + + ++I FV + +V + F I+ +N E+ G D T+ ++F Sbjct: 10 KRVIPEEKLERVIRHVIEAEGFVPDVVVAV---FCGDRLIQRINREHLGHDYATDTITFR 66 Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 G+ ++ ++I+ + FEN L + IH LHL GYD D+ Sbjct: 67 YNSGREIE------GEFYVSLDVIDKNSRRFKTGFENELFRVAIHSALHLAGYDDSGDEA 120 Query: 148 ACVMEGLERSILEDL 162 M+ E L L Sbjct: 121 RAGMKKREDRYLSQL 135 >gi|256838280|ref|ZP_05543790.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256739199|gb|EEU52523.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 142 Score = 78.1 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 9/137 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 I L + + + V + + ++S +F +I +N +Y D T++++ Sbjct: 10 IELPAIKKRAVSGWVKAV---AETYGKKTGDISYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + + A ++ L IIHG LHL G + Sbjct: 67 FDYTEGNKIS------GDLFISLDTVRTNAETFHTDYNEELHRTIIHGILHLCGINDKGP 120 Query: 146 KDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 121 GEREIMEENENRALAIL 137 >gi|203287529|ref|YP_002222544.1| hypothetical protein BRE_63 [Borrelia recurrentis A1] gi|226701633|sp|B5RQN9|RRMF_BORRA RecName: Full=Probable rRNA maturation factor gi|201084749|gb|ACH94323.1| uncharacterized conserved protein [Borrelia recurrentis A1] Length = 148 Score = 78.1 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 ++S F+ ELS++ ++ I+ LN E+R +PT+VLSF S + + + G Sbjct: 25 ILSVLNFLCIKEYELSVILCNNEYIQKLNGEFRQKPEPTDVLSFNYFEGS-EQINHKIQG 83 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILED 161 DIV++ E +E + E L IHG LHL+GY H + M ++ +L + Sbjct: 84 DIVISLEYLEFSSLEFNVEMYEELQRNTIHGILHLIGYTHDTNDFQNETMLIIQERVLRE 143 >gi|237720597|ref|ZP_04551078.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229450348|gb|EEO56139.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 139 Score = 78.1 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 9/134 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + + + + + + E++ +F +I +N +Y D T++++ Sbjct: 10 VKMPDIKKRETTEWIKAVAASYG---KRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + I A G +E+ L +IIHG LHL G + Sbjct: 67 FDYCE------GDRLSGDLFISLDTIRTNAEQFGASYEDELHRVIIHGILHLCGINDKGP 120 Query: 146 KDACVMEGLERSIL 159 + VME E L Sbjct: 121 GEREVMEAAENQAL 134 >gi|284040393|ref|YP_003390323.1| hypothetical protein Slin_5558 [Spirosoma linguale DSM 74] gi|283819686|gb|ADB41524.1| protein of unknown function UPF0054 [Spirosoma linguale DSM 74] Length = 137 Score = 78.1 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 6/127 (4%) Query: 37 AKAVSNLISKGYFVKENIV-ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 +A+ + + + V +L+ +F + +N +Y D T++++F + Sbjct: 16 KQAIRQWLKQQTEAEGYSVGDLNYMFCSDEYLLQVNRDYLQHDYYTDIITFDMSEEEGKI 75 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 GD+ ++ E + AN L E + ++ HG LHL GY D++A +M E Sbjct: 76 E-----GDVFVSVERVIDNANKLAVPAEQEMRRVLAHGLLHLCGYGDKTDEEAALMRLKE 130 Query: 156 RSILEDL 162 + L Sbjct: 131 DEWISRL 137 >gi|227872335|ref|ZP_03990689.1| possible metal-dependent hydrolase [Oribacterium sinus F0268] gi|227841818|gb|EEJ52094.1| possible metal-dependent hydrolase [Oribacterium sinus F0268] Length = 141 Score = 78.1 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 47/136 (34%), Positives = 63/136 (46%), Gaps = 16/136 (11%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG--------- 95 S Y V LS+ F +S + LN RGID T+VLSFP G Sbjct: 4 SLDYVSCPYDVSLSVSFIESEEMRELNLSQRGIDYATDVLSFPLLSLDPPGSFPESLEEE 63 Query: 96 -------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 LMLGDIVL ++ ++ +A G E L LI H LHL YDH+++++ Sbjct: 64 WGNFDPETGELMLGDIVLNWDKVKEQAESYGHSLERELAFLIAHSLLHLFSYDHMEEEER 123 Query: 149 CVMEGLERSILEDLGI 164 ME + ILE+ G Sbjct: 124 KEMEQKQEEILENRGY 139 >gi|171912516|ref|ZP_02927986.1| hypothetical protein VspiD_15090 [Verrucomicrobium spinosum DSM 4136] Length = 141 Score = 78.1 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 52/134 (38%), Gaps = 14/134 (10%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 +T K ++ + + E+ V I ++ ++ PT+V++ Sbjct: 17 ARWKTTALQAVPKCLAAARESESPLSQLN-EVDFVLVSDRTIAKVHGDFLDDPTPTDVIT 75 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F G+I+++ + + +A + ++ + ++HG LHL G+ + Sbjct: 76 F-------------HHGEILISLDTAQKQAADHNESYDREVARYMVHGLLHLAGWSDYEP 122 Query: 146 KDACVMEGLERSIL 159 + M ++ IL Sbjct: 123 AERTEMHRIQEEIL 136 >gi|119357533|ref|YP_912177.1| hypothetical protein Cpha266_1736 [Chlorobium phaeobacteroides DSM 266] gi|145572761|sp|A1BH76|RRMF_CHLPD RecName: Full=Probable rRNA maturation factor gi|119354882|gb|ABL65753.1| protein of unknown function UPF0054 [Chlorobium phaeobacteroides DSM 266] Length = 142 Score = 77.8 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 9/134 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 R L E V + V+ ++ + F+ E++V + + + I +N E+ G D PT+ ++F Sbjct: 13 RELAESVLTEVVTTVLQEEGFLIESLVAV---YCGNKMIHRINREFLGHDYPTDTITFSY 69 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + S G+ ++ + +E A F+ L+ + IH LHL GY D++ Sbjct: 70 SKGSEID------GEFYISLDAVEENALRYKVGFDEELMRVTIHSALHLAGYQDGKDEER 123 Query: 149 CVMEGLERSILEDL 162 M+ E L+ Sbjct: 124 VQMQEKEALYLKRF 137 >gi|86134802|ref|ZP_01053384.1| uncharacterized protein family UPF0054 [Polaribacter sp. MED152] gi|85821665|gb|EAQ42812.1| uncharacterized protein family UPF0054 [Polaribacter sp. MED152] Length = 137 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 11/142 (7%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E E ++ + S+ F + E++ +F D + LN ++ D T+++ Sbjct: 7 ETDFILEDETSLKNWINAVASQQEF---EVGEINYIFCDDAYLHKLNVKFLNHDTLTDII 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SF + GDI ++ E ++ A+ F L ++IHG LH +GY Sbjct: 64 SFDNSLGKLLN------GDIFISVERVKDNADDFKVSFHEELHRVMIHGILHYMGYKDKS 117 Query: 145 DKDACVMEGLERSILEDLGIND 166 + + M E L L +++ Sbjct: 118 EDEKKEMRKQEN--LAILKLSN 137 >gi|299145303|ref|ZP_07038371.1| putative metalloprotease [Bacteroides sp. 3_1_23] gi|298515794|gb|EFI39675.1| putative metalloprotease [Bacteroides sp. 3_1_23] Length = 139 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 9/134 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + + + S + + E++ +F +I +N +Y D T++++ Sbjct: 10 VKMPDIKKRETTEWIKTVASSYG---KRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + I A G +E+ L +IIHG LHL G + Sbjct: 67 FDYCE------GDRLSGDLFISLDTIRTNAEQFGASYEDELHRVIIHGILHLCGINDKGP 120 Query: 146 KDACVMEGLERSIL 159 + VME E L Sbjct: 121 GEREVMEAAENQAL 134 >gi|253582281|ref|ZP_04859504.1| metal-binding protein [Fusobacterium varium ATCC 27725] gi|251835820|gb|EES64358.1| metal-binding protein [Fusobacterium varium ATCC 27725] Length = 155 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 7/153 (4%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I++E + I+ + K + F + V LSL+FT + I+ +N Sbjct: 5 VDISLEIEGYSSLINEEEM------KKYIKEALESEFESDRPVYLSLLFTGNEEIQVINK 58 Query: 73 EYRGIDKPTNVLSFPTAF-ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +YRG D+PT+V+SF D LGDIV++ E +E +A + L +++ Sbjct: 59 QYRGKDQPTDVISFAYHETEDFDIGPYDTLGDIVISMERVEEQAAEYNHSPKRELYYVLT 118 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 HG LHLLGYDH+++ D M E IL G Sbjct: 119 HGLLHLLGYDHIEEDDKKEMRAREEEILGQFGY 151 >gi|313157525|gb|EFR56943.1| translation metalloprotein YbeY [Alistipes sp. HGB5] Length = 143 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 3/105 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++S +F + R+ +N +Y G D T+V++F + + ++ GDI + E + A Sbjct: 37 DVSYIFCSAQRLLEMNRQYLGHDYFTDVITFDYSDRK---GARVISGDIFIDVETVADNA 93 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + G + +++HG LHL G + M E L+ Sbjct: 94 RLYGFSTLQEMRRVVVHGVLHLCGQGDKTPRTNAQMHRKEDKYLK 138 >gi|147856469|emb|CAN80775.1| hypothetical protein VITISV_042331 [Vitis vinifera] Length = 532 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 16/91 (17%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 VELS++ + I LN E+R D T+++ LGDIV++ E Sbjct: 148 ENVELSVLLCNDEFIRKLNKEWRDEDHATDLM----------------LGDIVISVETAA 191 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +A G + + L++HG LHLLG+DH Sbjct: 192 RQAEERGHTLLDEIRILMVHGLLHLLGFDHE 222 >gi|154249670|ref|YP_001410495.1| hypothetical protein Fnod_0988 [Fervidobacterium nodosum Rt17-B1] gi|154153606|gb|ABS60838.1| protein of unknown function UPF0054 [Fervidobacterium nodosum Rt17-B1] Length = 147 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 3/128 (2%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 F + V N + + V++S +F + +N +YRG D T+VL+F + Sbjct: 14 FIQKVKNELEAIVKKEIGNVDVSFIFITPETMAEMNKQYRGKDGATDVLTFVYGNNAEGE 73 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGL 154 + L E I + G E L+ +++H LH+ GYDH +++ M Sbjct: 74 EEP--YSEGYLCLEKILENSKEFGNSLEKELLTVLVHSILHMAGYDHEYSSENSEEMFKK 131 Query: 155 ERSILEDL 162 + ++ + Sbjct: 132 QEEYVDKI 139 >gi|325263892|ref|ZP_08130625.1| putative metalloprotease [Clostridium sp. D5] gi|324030930|gb|EGB92212.1| putative metalloprotease [Clostridium sp. D5] Length = 165 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 16/134 (11%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS-------------- 92 Y E++L+ T I +N +R IDK T+VLSFP Sbjct: 30 EYEGCPYEAEINLLLTSDEDIRDMNQMFRQIDKATDVLSFPMLEYQVPGDFSAMEEQSQD 89 Query: 93 --SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 + LMLGDIV++ + +A G LI H LHL GYDH+++++ + Sbjct: 90 CFNPESGELMLGDIVISKNKVLAQAEAYGHSPRREYAFLIAHSMLHLFGYDHMEEEERLL 149 Query: 151 MEGLERSILEDLGI 164 ME + ILE++ I Sbjct: 150 MEQKQNDILENIQI 163 >gi|203283986|ref|YP_002221726.1| hypothetical protein BDU_64 [Borrelia duttonii Ly] gi|226701634|sp|B5RKV9|RRMF_BORDL RecName: Full=Probable rRNA maturation factor gi|201083429|gb|ACH93020.1| uncharacterized conserved protein [Borrelia duttonii Ly] Length = 148 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 ++S F+ ELS++ ++ I+ LN E+R +PT+VLSF S + + + G Sbjct: 25 ILSVLNFLCIKEYELSVILCNNEYIQKLNGEFRQKPEPTDVLSFNYFEGS-EQINHKIQG 83 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILED 161 DI+++ E +E + E L IHG LHL+GY H + M ++ +L + Sbjct: 84 DIIISLEYLEFSSLEFNVEMYEELQRNTIHGILHLIGYTHDTNDFQNETMLIIQERVLRE 143 >gi|307718663|ref|YP_003874195.1| transcriptional regulator [Spirochaeta thermophila DSM 6192] gi|306532388|gb|ADN01922.1| transcriptional regulator [Spirochaeta thermophila DSM 6192] Length = 148 Score = 77.8 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 10/142 (7%) Query: 22 WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 W D + V A V+ ++ + + ++++V + I+ LN +RG D+PT Sbjct: 8 WKDIPPSP--WQEVVASFVARVLEEVG---KESGDIAVVMCSAEFIQELNRTFRGKDEPT 62 Query: 82 NVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 +VLSFP + S + GDIV+A E++ +A G L+ +I+HG LHL G D Sbjct: 63 DVLSFPNSE-----GGSRIQGDIVIAPEVVVHQAADWGVPAHEELLRVILHGLLHLSGMD 117 Query: 142 HVDDKDACVMEGLERSILEDLG 163 H+ + M + IL + Sbjct: 118 HMSTDPSEPMLVYQEDILSRVK 139 >gi|297566635|ref|YP_003685607.1| hypothetical protein Mesil_2231 [Meiothermus silvanus DSM 9946] gi|296851084|gb|ADH64099.1| protein of unknown function UPF0054 [Meiothermus silvanus DSM 9946] Length = 149 Score = 77.8 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 1/102 (0%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +++V TD I L E+ G D PT+VLSFPT LGDIV++ + + +A Sbjct: 46 VTVVLTDDPEIRALKLEHWGEDTPTDVLSFPTFEPGDPFVPP-HLGDIVISLDTAKHQAE 104 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 G E + L H HLLG+DH + + ++ I Sbjct: 105 EHGHTLETEALILAAHSLWHLLGHDHTTEAEWAHFHHVQALI 146 >gi|94985374|ref|YP_604738.1| hypothetical protein Dgeo_1273 [Deinococcus geothermalis DSM 11300] gi|145572754|sp|Q1IYW5|RRMF_DEIGD RecName: Full=Probable rRNA maturation factor gi|94555655|gb|ABF45569.1| Predicted metal-dependent hydrolase, UPF0054 [Deinococcus geothermalis DSM 11300] Length = 155 Score = 77.8 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Query: 41 SNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM 100 + L S E+++V I L E+ G D PT+VLSFPT D Sbjct: 20 AALTSAMRHFGVEDREVTVVLVGDRTIRALKREHWGEDAPTDVLSFPTWE-PGDPFMPPH 78 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 LGDI+++ + +A G + L HG HL+G+DH + Sbjct: 79 LGDIIISLDTAGRQAAARGHSLTREVALLASHGLTHLVGHDHPHAE 124 >gi|150009548|ref|YP_001304291.1| hypothetical protein BDI_2961 [Parabacteroides distasonis ATCC 8503] gi|255013159|ref|ZP_05285285.1| hypothetical protein B2_04585 [Bacteroides sp. 2_1_7] gi|166228935|sp|A6LG55|RRMF_PARD8 RecName: Full=Probable rRNA maturation factor gi|149937972|gb|ABR44669.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] Length = 142 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 9/137 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 I L + + + + + + ++S +F +I +N +Y D T++++ Sbjct: 10 IQLPAIKKKAVSGWIKAV---AETYGKKTGDISYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + + A ++ L IIHG LHL G + Sbjct: 67 FDYTEGNKIS------GDLFISLDTVRTNAETFHTDYNEELHRTIIHGILHLCGINDKGP 120 Query: 146 KDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 121 GEREIMEENENRALAIL 137 >gi|229495498|ref|ZP_04389231.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] gi|229317481|gb|EEN83381.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] Length = 152 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 12/152 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + E + + L + A+ + + ++ + + ELS FT+ I Sbjct: 1 MKINYFTE-----RNVRVPHLRRQIIARWIRQVANEMG---KTLGELSYKFTNDAGILEA 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N + D T++L+F + S+ S GDI+++ E + A G +E L ++ Sbjct: 53 NKLFLNHDYYTDILTFDASQEGSEYIS----GDILISLETVASNAEKFGVPYEEELHRVL 108 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 IHG LHL G D ++ +M E + L Sbjct: 109 IHGVLHLSGIDDKTPEEERLMHFAEDRAIVLL 140 >gi|254880983|ref|ZP_05253693.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319639991|ref|ZP_07994718.1| metalloprotease [Bacteroides sp. 3_1_40A] gi|254833776|gb|EET14085.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317388269|gb|EFV69121.1| metalloprotease [Bacteroides sp. 3_1_40A] Length = 138 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 58/139 (41%), Gaps = 9/139 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + + + + + E++ +F +I +N +Y D T++++ Sbjct: 9 VKMPDIKKKKTTGWIKEVAACYG---KRVGEIAYIFCSDDKILEVNRQYLQHDYYTDIIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + + A + ++ L +IIHG LHL G + Sbjct: 66 FDYCE------GDRISGDLFISLDTVRSNAEQFEQPYDRELHRVIIHGILHLCGINDKGP 119 Query: 146 KDACVMEGLERSILEDLGI 164 + +ME E L + + Sbjct: 120 GEREIMEAAENKALALISL 138 >gi|298373953|ref|ZP_06983911.1| metalloprotease [Bacteroides sp. 3_1_19] gi|298268321|gb|EFI09976.1| metalloprotease [Bacteroides sp. 3_1_19] Length = 142 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 9/137 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 I L + + + + + + ++S +F +I +N +Y D T++++ Sbjct: 10 IQLPAIKKKAVSGWIKAV---AETYGKKTGDISYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + + A ++ L IIHG LHL G + Sbjct: 67 FDYTEGNKIS------GDLFISLDTVRTNAETFHTDYNEELHRTIIHGILHLCGINDKGP 120 Query: 146 KDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 121 GEREIMEENENRALAIL 137 >gi|150003785|ref|YP_001298529.1| hypothetical protein BVU_1217 [Bacteroides vulgatus ATCC 8482] gi|294777391|ref|ZP_06742842.1| metalloprotein, YbeY family [Bacteroides vulgatus PC510] gi|172048643|sp|A6KZP3|RRMF_BACV8 RecName: Full=Probable rRNA maturation factor gi|149932209|gb|ABR38907.1| conserved hypothetical protein with conserved domain [Bacteroides vulgatus ATCC 8482] gi|294448459|gb|EFG17008.1| metalloprotein, YbeY family [Bacteroides vulgatus PC510] Length = 138 Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 6/113 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + E++ +F +I +N +Y D T++++F + GD+ ++ + + Sbjct: 32 KRVGEIAYIFCSDDKILEVNRQYLQHDYYTDIITFDYCE------GDRISGDLFISLDTV 85 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 A + ++ L +IIHG LHL G + + +ME E L + + Sbjct: 86 RSNAEQFEQPYDRELHRVIIHGILHLCGINDKGPGEREIMEAAENKALALISL 138 >gi|237716840|ref|ZP_04547321.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262405610|ref|ZP_06082160.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229442823|gb|EEO48614.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262356485|gb|EEZ05575.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|295086058|emb|CBK67581.1| conserved hypothetical protein TIGR00043 [Bacteroides xylanisolvens XB1A] Length = 139 Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 9/135 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + + + + + + E++ +F +I +N +Y D T++++ Sbjct: 10 VKMPDIKKRETTEWIKAVAASYG---KRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + I A G +E+ L +IIHG LHL G + Sbjct: 67 FDYCE------GDRLSGDLFISLDTIHTNAEQFGTSYEDELHRVIIHGILHLCGINDKGP 120 Query: 146 KDACVMEGLERSILE 160 + +MEG E L Sbjct: 121 GEREIMEGAENKALS 135 >gi|323343742|ref|ZP_08083969.1| metal dependent hydrolase [Prevotella oralis ATCC 33269] gi|323095561|gb|EFZ38135.1| metal dependent hydrolase [Prevotella oralis ATCC 33269] Length = 143 Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 9/134 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + + + + + E+ +F D +I +N +Y G D T++++F Sbjct: 12 PKIKKRETTAWIKAVAATYG---RKAGEIGYMFVDDAKILEVNNQYLGHDYYTDIITFDY 68 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + GD+V++ + + A K++E L +IIHG LHL G + + Sbjct: 69 NDGDTIN------GDLVISLDTVHSNAEKFNKKYEEELHRVIIHGILHLCGINDKGPGER 122 Query: 149 CVMEGLERSILEDL 162 +ME E L L Sbjct: 123 EIMEANENKALALL 136 >gi|58697454|ref|ZP_00372745.1| putative metal-dependent hydrolase [Wolbachia endosymbiont of Drosophila simulans] gi|58536113|gb|EAL59737.1| putative metal-dependent hydrolase [Wolbachia endosymbiont of Drosophila simulans] Length = 160 Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 76/153 (49%), Gaps = 8/153 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L++ + + W I F V N K + +S+ D + LN Sbjct: 12 LEVNILDKKWCSIIENPK----NFVLGVINASLKELKIDHYKPNISIALADDDLLHQLNL 67 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 ++R +DKPTNVLSFP S++ LGDI ++ + I+ E++ H+ H+++H Sbjct: 68 KFREMDKPTNVLSFPYEQLSNECD----LGDIAISIDTIKRESHEYYIPILAHIAHMLVH 123 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G LHLLGYDH + +M+ LER IL LG N Sbjct: 124 GLLHLLGYDHQKKDEEIIMKNLEREILASLGYN 156 >gi|3643597|gb|AAC42244.1| hypothetical protein [Arabidopsis thaliana] Length = 343 Score = 77.0 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 30/168 (17%) Query: 4 KKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENI--------- 54 KK L + I +E D++ ++ + E++ + +K++ Sbjct: 77 KKKQELELSVSICIEE-QLPDDLEIQNIAEMLRLNVPMAMTLAFNGLKDSKYKTRETDIE 135 Query: 55 -------VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLA 107 VELS++ + I LN E+RG D T+VLS + LM+GD+V++ Sbjct: 136 DLGGYETVELSVMLCNDDFICKLNKEWRGEDHATDVLSM-SQHVPELKLPVLMMGDLVIS 194 Query: 108 YEIIEIEANVLGKEFENHLVHLI------------IHGFLHLLGYDHV 143 E +A G + + L+ IHG LHLLG+DH Sbjct: 195 VETAARQAAERGHTLLDEIRILVSLFADTLNVFSKIHGLLHLLGFDHE 242 >gi|315185807|gb|EFU19573.1| protein of unknown function UPF0054 [Spirochaeta thermophila DSM 6578] Length = 148 Score = 77.0 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 5/112 (4%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + ++++V I+ LN +RG D+PT+VLSFP + S + GDIV+A E++ Sbjct: 33 KESGDIAVVMCSPEFIQELNRTFRGKDEPTDVLSFPDSE-----GGSRIQGDIVIAPEVV 87 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +A G L+ +I+HG LHL G DH+ + M + IL + Sbjct: 88 VHQAADWGVPAHEELLRVILHGLLHLSGMDHMSTDPSEPMLVYQEDILSRVK 139 >gi|149919545|ref|ZP_01908025.1| hypothetical protein PPSIR1_10855 [Plesiocystis pacifica SIR-1] gi|149819670|gb|EDM79097.1| hypothetical protein PPSIR1_10855 [Plesiocystis pacifica SIR-1] Length = 166 Score = 77.0 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 8/118 (6%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI 110 E + L + TD + L+ Y G + PT+VLSF G LGD+VL ++ Sbjct: 43 PEELAVLGVRITDDEEMSALHLRYMGEEGPTDVLSFT-------GDGPGDLGDLVLDWQA 95 Query: 111 IEIEANV-LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 IE +A + L++HG HL G+DH D + M ER +L LG+ P Sbjct: 96 IERQAAAPTDAARLDEATVLMVHGLAHLTGHDHRDRVEGRRMHLDERRVLRSLGVASP 153 >gi|88855036|ref|ZP_01129701.1| hypothetical protein A20C1_04121 [marine actinobacterium PHSC20C1] gi|88815564|gb|EAR25421.1| hypothetical protein A20C1_04121 [marine actinobacterium PHSC20C1] Length = 153 Score = 77.0 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 16/159 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I E+A+ DE + LC + EL +VF D +E L Sbjct: 1 MSIEINNESAVEVDEHAFQRLCTFALDQ----------LHVHPDAELGIVFVDEAAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM----LGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ PT+VLSFP LGDIV+ ++ +A G + Sbjct: 51 HVQWMDEPGPTDVLSFPMDELRPGTEDRQTPAGLLGDIVVCPQVAISQAETAGHPPLEEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + L HG LHLLG+DH + ++ M GL+R IL LG Sbjct: 111 LLLTTHGLLHLLGFDHAEPEEEKEMFGLQREIL--LGFA 147 >gi|257469443|ref|ZP_05633535.1| metal-binding protein [Fusobacterium ulcerans ATCC 49185] gi|317063687|ref|ZP_07928172.1| metal-binding protein [Fusobacterium ulcerans ATCC 49185] gi|313689363|gb|EFS26198.1| metal-binding protein [Fusobacterium ulcerans ATCC 49185] Length = 155 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 43/128 (33%), Positives = 66/128 (51%), Gaps = 1/128 (0%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-ASSDGC 96 K + F + V LS++FT + I+ +N +YRG D+PT+V+SF D Sbjct: 24 KKYIKEALESEFESDRPVYLSILFTGNEEIQVINKQYRGKDQPTDVISFAYHETEDFDIG 83 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 LGDIV++ E ++ +A + L +++ HG LHLLGYDH+++ D M E Sbjct: 84 PYDTLGDIVISMERVDEQAAEYNHSPKRELYYVLTHGLLHLLGYDHIEEDDKKEMRAREE 143 Query: 157 SILEDLGI 164 IL G Sbjct: 144 EILGQFGY 151 >gi|145558835|sp|Q5GS35|RRMF_WOLTR RecName: Full=Probable rRNA maturation factor Length = 150 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 8/153 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L++ + + W + F + N K + + +S+ D + + LN Sbjct: 2 LEVNILDKKWYSIVEDPKG----FTLNIINASLKELKIDQYKPNISIALADDNLLHQLNL 57 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +R ++KPTNVLSFP SS+ LGDI ++ + + E++ H+ H+++H Sbjct: 58 RFRQMNKPTNVLSFPCEQLSSECD----LGDIAISIDTVRKESDEYHIPIPAHVAHMLVH 113 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G LHLLGYDH + VM+ LE IL LG N Sbjct: 114 GLLHLLGYDHQKKGEEVVMKNLEGKILASLGYN 146 >gi|319953028|ref|YP_004164295.1| metalloprotease ybey [Cellulophaga algicola DSM 14237] gi|319421688|gb|ADV48797.1| metalloprotease ybeY [Cellulophaga algicola DSM 14237] Length = 139 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 9/138 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E+ E +A ++ +I +++ LS +F D + +N +Y D T+++ Sbjct: 7 ELDFELSNEPYYADWLTRVIESEG---KSLGNLSYIFCDDAYLLDINMKYLDHDTYTDIV 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 +F + GD+ ++ E + A +F L ++ HG LHL GY Sbjct: 64 TFDYCE------GDTIAGDLFISIERVLENAKEYNVDFLEELHRVMSHGVLHLAGYKDKT 117 Query: 145 DKDACVMEGLERSILEDL 162 D DA +M E ++ Sbjct: 118 DMDAALMRKKEEEKIKLF 135 >gi|325268276|ref|ZP_08134909.1| metal dependent hydrolase [Prevotella multiformis DSM 16608] gi|324989418|gb|EGC21368.1| metal dependent hydrolase [Prevotella multiformis DSM 16608] Length = 139 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 9/138 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + ++ + + + I E+ +F +I +N EY G D T++++ Sbjct: 9 VKMPKIRKRDTSRWIKAVAATYG---REIGEIGYMFVGDEKILEINNEYLGHDYYTDIIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F +++ GD+V++ + + A + K +E+ L +IIHG LHL G + Sbjct: 66 FDYDE------GNVLNGDLVISLDTVRSNAELFHKSYEDELNRVIIHGILHLCGINDKGP 119 Query: 146 KDACVMEGLERSILEDLG 163 + +ME E L L Sbjct: 120 GEREIMEENENKALALLK 137 >gi|145559542|sp|Q9RSN2|RRMF_DEIRA RecName: Full=Probable rRNA maturation factor Length = 155 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 41 SNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM 100 ++L + E+++V I L E+ G D T+VLSFPT D Sbjct: 20 ASLSAAMQHFGGEEREVTVVLVGDPEIRALKLEHWGEDAATDVLSFPTWE-PGDPFMPPH 78 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 LGDI+++ + + +A G + L HG HL+G+DH + Sbjct: 79 LGDIIISLDTAQRQAESRGHSLTREVALLASHGLTHLVGHDHPHAE 124 >gi|15807086|ref|NP_295815.1| hypothetical protein DR_2092 [Deinococcus radiodurans R1] gi|6459888|gb|AAF11642.1|AE002045_2 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 175 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 41 SNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM 100 ++L + E+++V I L E+ G D T+VLSFPT D Sbjct: 40 ASLSAAMQHFGGEEREVTVVLVGDPEIRALKLEHWGEDAATDVLSFPTWE-PGDPFMPPH 98 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 LGDI+++ + + +A G + L HG HL+G+DH + Sbjct: 99 LGDIIISLDTAQRQAESRGHSLTREVALLASHGLTHLVGHDHPHAE 144 >gi|325284047|ref|YP_004256588.1| metalloprotease ybeY [Deinococcus proteolyticus MRP] gi|324315856|gb|ADY26971.1| metalloprotease ybeY [Deinococcus proteolyticus MRP] Length = 155 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 11/134 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + + +E +++ ++ E+++V D I+ L Sbjct: 2 IDLVIEY-------DPPAGLTAALESSLAAVMRHFEVADR---EVTVVLVDDDTIQALKL 51 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 E+ G D T+VLSFP D LGDI+++ + +A G + L H Sbjct: 52 EHWGEDAATDVLSFPAWE-PGDPFMPPHLGDIIISLDTAARQAEARGHSLTREVALLASH 110 Query: 133 GFLHLLGYDHVDDK 146 G HL+G+DH + Sbjct: 111 GMTHLVGHDHPHAE 124 >gi|283853555|ref|ZP_06370794.1| protein of unknown function UPF0054 [Desulfovibrio sp. FW1012B] gi|283571054|gb|EFC19075.1| protein of unknown function UPF0054 [Desulfovibrio sp. FW1012B] Length = 143 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 37/102 (36%), Positives = 49/102 (48%), Gaps = 9/102 (8%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E L + LN +Y G+ PTNVLSFP D LG++ ++ + + EA Sbjct: 37 EYDLRLVGDGEMAALNRDYLGLVGPTNVLSFPAD----DPGRPEYLGEMAVSLDTVAREA 92 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 + G+E HL L+ HGFLHL G DH VME L Sbjct: 93 FLYGQEPATHLARLLAHGFLHLAGLDHG-----PVMEALTEQ 129 >gi|325954630|ref|YP_004238290.1| metalloprotease ybeY [Weeksella virosa DSM 16922] gi|323437248|gb|ADX67712.1| metalloprotease ybeY [Weeksella virosa DSM 16922] Length = 139 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 6/129 (4%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 + + + + ++I EL+ +F D + +N +Y D T+V+ F + Sbjct: 16 QEWIDWITNSMLEEGKSIGELNYIFCDDEYLLAINQQYLDHDYYTDVIGFDNSEND---- 71 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 ++ GDI ++ I A F+N L ++IHG LH GY + +D M E Sbjct: 72 --VLHGDIFISVTRIAENAQNNAVSFQNELARVMIHGILHFAGYLDYEKEDKAEMTAKEN 129 Query: 157 SILEDLGIN 165 L + Sbjct: 130 FYLNKFSLA 138 >gi|315452585|ref|YP_004072855.1| putative metalloprotease HPK [Helicobacter felis ATCC 49179] gi|315131637|emb|CBY82265.1| putative metalloprotease HPK [Helicobacter felis ATCC 49179] Length = 146 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 7/109 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + LV DS RI+ LN +YRG+DK T+VLSFP + + +LG +V+ E ++EA Sbjct: 35 VELVLVDSERIQELNRDYRGVDKSTDVLSFPIEMPAQN-----LLGSVVINVECAQMEAQ 89 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G + L L +HG+LHLLGYDH D LE +++ + Sbjct: 90 KRGHSLLDELRLLFLHGYLHLLGYDHEKDNGEQ--RALEEEMIQVFNLP 136 >gi|291277187|ref|YP_003516959.1| hypothetical protein HMU09740 [Helicobacter mustelae 12198] gi|290964381|emb|CBG40231.1| Putative hypothetical protein [Helicobacter mustelae 12198] Length = 151 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 3/89 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + L+F D + I+ +N EYR DKPT+VLSFP G +++ LG +V+ I + A+ Sbjct: 33 IELLFVDENMIQGMNKEYRNQDKPTDVLSFPLDAM---GIANMPLGSVVICIPIAQGAAH 89 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 G E + L IHG LHL GYDH D Sbjct: 90 FFGHSLEEEIALLFIHGVLHLQGYDHEVD 118 >gi|293373384|ref|ZP_06619740.1| metalloprotein, YbeY family [Bacteroides ovatus SD CMC 3f] gi|292631670|gb|EFF50292.1| metalloprotein, YbeY family [Bacteroides ovatus SD CMC 3f] Length = 128 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 9/131 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + + + + + + + + E++ +F +I +N +Y D T++++F Sbjct: 2 PDIKKRETTEWIKAVAASYG---KRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIITFDY 58 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + GD+ ++ + I A G +E+ L +IIHG LHL G + + Sbjct: 59 CE------GDRLSGDLFISLDTIRTNAEQFGASYEDELHRVIIHGILHLCGINDKGPGER 112 Query: 149 CVMEGLERSIL 159 VME E L Sbjct: 113 EVMEAAENQAL 123 >gi|149278196|ref|ZP_01884334.1| hypothetical protein PBAL39_11582 [Pedobacter sp. BAL39] gi|149230962|gb|EDM36343.1| hypothetical protein PBAL39_11582 [Pedobacter sp. BAL39] Length = 143 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 12/139 (8%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + +T+ + +SN + EL+ + + +N EY D T+V++ Sbjct: 17 LKKKTIIKDWIKATISN-------EGHELQELNFILCSDEYLLRINQEYLNHDTYTDVIT 69 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + A ++ GDI ++ E I+ A G + L ++IHG LHLLGY Sbjct: 70 FDHSEALK-----MIAGDIFISIERIQENAKNFGHTTQQELCRVMIHGTLHLLGYKDKGK 124 Query: 146 KDACVMEGLERSILEDLGI 164 +M E L L + Sbjct: 125 AAKTLMTQKEDQYLALLSL 143 >gi|120437624|ref|YP_863310.1| hypothetical protein GFO_3300 [Gramella forsetii KT0803] gi|145558812|sp|A0M6J8|RRMF_GRAFK RecName: Full=Probable rRNA maturation factor gi|117579774|emb|CAL68243.1| protein belonging to UPF0054 [Gramella forsetii KT0803] Length = 143 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 63/151 (41%), Gaps = 16/151 (10%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++ EN ++ KA+ + + I ++S +F D + +N Sbjct: 5 EINFFSENDF---VLNREQDYRNWIEKAIES-------ENKYIGDISFIFCDDEYLHKIN 54 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 EY D T+++SF + + + GDI ++ E ++ AN EF+ L ++I Sbjct: 55 LEYLAHDTYTDIISF------DNTLGNTLQGDIYISTERVQENANSFNTEFDEELKRVLI 108 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 HG LH G+ +++ +M E + Sbjct: 109 HGILHFCGFKDKTEREQELMRRKEEEKIALF 139 >gi|255010260|ref|ZP_05282386.1| hypothetical protein Bfra3_14062 [Bacteroides fragilis 3_1_12] gi|313148055|ref|ZP_07810248.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313136822|gb|EFR54182.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 139 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 56/135 (41%), Gaps = 9/135 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + + + + + I E++ +F +I +N +Y D T++++ Sbjct: 10 VKMPDIKKRETTEWIKAVAATYG---KRIGEIAYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ E ++ + ++ L IIHG LHL G + Sbjct: 67 FDY------CQGDRLSGDLFISLETVKTNSEQFNTTYDEELHRTIIHGILHLCGINDKGP 120 Query: 146 KDACVMEGLERSILE 160 + +ME E L Sbjct: 121 GEREIMEAAENRALA 135 >gi|88801787|ref|ZP_01117315.1| hypothetical protein PI23P_03972 [Polaribacter irgensii 23-P] gi|88782445|gb|EAR13622.1| hypothetical protein PI23P_03972 [Polaribacter irgensii 23-P] Length = 137 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 6/111 (5%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 EL+ +F D + LN E+ D T+++SF + GDI ++ E + Sbjct: 32 EEGELNYIFCDDAYLLKLNVEFLQHDTFTDIISFDNSIGKLIS------GDIFISTERVA 85 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 A F+ L ++IHG LH +G+ ++ M E + L L Sbjct: 86 ENATDYKVSFQEELQRVMIHGVLHCVGFKDKTMEEQEEMTRQENTALLVLN 136 >gi|42520569|ref|NP_966484.1| hypothetical protein WD0726 [Wolbachia endosymbiont of Drosophila melanogaster] gi|99034707|ref|ZP_01314643.1| hypothetical protein Wendoof_01000541 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|225630499|ref|YP_002727290.1| hypothetical protein WRi_007500 [Wolbachia sp. wRi] gi|59799057|sp|Q73H48|RRMF_WOLPM RecName: Full=Probable rRNA maturation factor gi|254806603|sp|C0R3K7|RRMF_WOLWR RecName: Full=Probable rRNA maturation factor gi|42410308|gb|AAS14418.1| conserved hypothetical protein TIGR00043 [Wolbachia endosymbiont of Drosophila melanogaster] gi|225592480|gb|ACN95499.1| conserved hypothetical protein [Wolbachia sp. wRi] Length = 150 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 76/153 (49%), Gaps = 8/153 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L++ + + W I F V N K + +S+ D + LN Sbjct: 2 LEVNILDKKWCSIIENPK----NFVLGVINASLKELKIDHYKPNISIALADDDLLHQLNL 57 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 ++R +DKPTNVLSFP S++ LGDI ++ + I+ E++ H+ H+++H Sbjct: 58 KFREMDKPTNVLSFPYEQLSNECD----LGDIAISIDTIKRESHEYYIPILAHIAHMLVH 113 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G LHLLGYDH + +M+ LER IL LG N Sbjct: 114 GLLHLLGYDHQKKDEEIIMKNLEREILASLGYN 146 >gi|295131912|ref|YP_003582588.1| metalloprotease [Zunongwangia profunda SM-A87] gi|294979927|gb|ADF50392.1| metalloprotease [Zunongwangia profunda SM-A87] Length = 146 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 9/139 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 E + + V+ K + +IS + + E+S +F D + +N + D T++ Sbjct: 12 SENDFDIIEKEVYKKWIERVISSEG---KRLGEISYIFCDDDYLLDINQRFLNHDTYTDI 68 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +SF D +L+ GDI ++ E + A ++FE L +++HG LH GY Sbjct: 69 ISF------DDSIGNLLNGDIYISTERVRENALEFNEDFETELKRVLVHGILHYCGYKDK 122 Query: 144 DDKDACVMEGLERSILEDL 162 D++A +M E ++ Sbjct: 123 SDEEAMLMREKESEKIKLF 141 >gi|189485340|ref|YP_001956281.1| membrane-associated hydrolase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|254801664|sp|B1GZY8|RRMF_UNCTG RecName: Full=Probable rRNA maturation factor gi|170287299|dbj|BAG13820.1| membrane-associated hydrolase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 141 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 7/112 (6%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI 110 K +++ + D I LN +YR I + T+V+SF +GDI ++ Sbjct: 33 KIKRYQVNFIMVDDKEIRKLNTKYRKIKRITDVISF-------LVVPEFFMGDIYISKTR 85 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + +A ++ L +L+IHG LHL GY D + M + I + L Sbjct: 86 SQEQAKEYSNTWQQELAYLVIHGLLHLCGYTDYDAVNKTKMFTKQDKIFKCL 137 >gi|219684794|ref|ZP_03539736.1| conserved hypothetical protein [Borrelia garinii PBr] gi|219685335|ref|ZP_03540154.1| conserved hypothetical protein [Borrelia garinii Far04] gi|219671739|gb|EED28794.1| conserved hypothetical protein [Borrelia garinii PBr] gi|219673108|gb|EED30128.1| conserved hypothetical protein [Borrelia garinii Far04] Length = 152 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 4/112 (3%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML---GDIVLAYEI 110 ELS++ D+ I+ LN ++R ++PT+VLSF + D + GDI++++E Sbjct: 36 DFELSVILCDNVYIQKLNNKFRNKNEPTDVLSFNYNELNEDLVDGINYKIQGDIIISFEY 95 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILED 161 ++ A E L + IHG LHL+G++H + M L+ ++L Sbjct: 96 LKFSAQEFNVEIYEELQRVTIHGILHLMGHNHETNDFQKEGMLILQENVLRK 147 >gi|193212442|ref|YP_001998395.1| hypothetical protein Cpar_0779 [Chlorobaculum parvum NCIB 8327] gi|238692633|sp|B3QMP2|RRMF_CHLP8 RecName: Full=Probable rRNA maturation factor gi|193085919|gb|ACF11195.1| protein of unknown function UPF0054 [Chlorobaculum parvum NCIB 8327] Length = 141 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 58/152 (38%), Gaps = 17/152 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + LQI DE L ++V + + ++ + I + Sbjct: 1 MPLQIFNTTKRTIDEALLAEAIQLVI-----------GEEGGKVGSIEAIYCGNKMIRRI 49 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N ++ D T+ ++F + G+ ++ ++IE A G FE+ L+ + Sbjct: 50 NRDFLNHDYATDTITFGYNE------GGEVEGEFYISLDVIESNARRFGVMFEDELLRVT 103 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 IH LHL+GYD + M E L+ + Sbjct: 104 IHSALHLMGYDDETPELRIAMSRREDLYLDRI 135 >gi|221120368|ref|XP_002165737.1| PREDICTED: similar to Putative metalloprotease C21orf57 [Hydra magnipapillata] Length = 159 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 6/142 (4%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 +L+ + + +LI+ + ++ L+F +++ LN+ +R ID+ T++LSF Sbjct: 7 NLQKAAIINTWQVRKDLITLRNIMGLQSFDVGLLFLSKNKMRELNYAHRKIDEATDILSF 66 Query: 87 PTA------FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 P S LGDI L ++I + +V E + V L+ HG +HL GY Sbjct: 67 PFHQSLTNADISKMNLEEKNLGDIFLCPQLIRRKYDVHDFELRSVFVPLLTHGLVHLCGY 126 Query: 141 DHVDDKDACVMEGLERSILEDL 162 H ++ +M E IL+ Sbjct: 127 AHETEEQYELMHAKELEILKRF 148 >gi|25091585|sp|Q8K9C1|RRMF_BUCAP RecName: Full=Probable rRNA maturation factor Length = 158 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 83/166 (50%), Gaps = 13/166 (7%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 +KK N L +Q +N I + + E K + K+N+ +++ Sbjct: 1 MKKKNNIILTIQKNCKNT---KNIPKKYIFEKWIKKVLYK--------KKNVNLINIRIV 49 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 D ++ +N +YRG +K TN+LSF + +LGD+VL +IIE E+ K Sbjct: 50 DEREMKNINLKYRGKNKSTNILSFKFDL--FINKNQTLLGDLVLCKKIIEKESLKYQKTL 107 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E+ H+IIHG LHLLGYDH + K+ +ME +E I+ L PY Sbjct: 108 ESRWAHMIIHGTLHLLGYDHKNKKEKKIMEKIENKIMLFLNYEKPY 153 >gi|333029485|ref|ZP_08457546.1| metalloprotease ybeY [Bacteroides coprosuis DSM 18011] gi|332740082|gb|EGJ70564.1| metalloprotease ybeY [Bacteroides coprosuis DSM 18011] Length = 159 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 9/131 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + E + + + + +K + E++ +F +I +N Y D T++++F Sbjct: 26 PIINEKLIQEWIKEVATK---YQRRAGEIAYIFCSDEKILEVNRTYLQHDYYTDIITFDY 82 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 +++ GD+ ++ + ++ + + L IIHG LHL G + + Sbjct: 83 ------CKGNIISGDLFISLDTVKTNSEQFNTPYNEELHRTIIHGILHLCGINDKGPGER 136 Query: 149 CVMEGLERSIL 159 +ME E L Sbjct: 137 EIMEQAENEAL 147 >gi|315639262|ref|ZP_07894424.1| metalloprotease [Campylobacter upsaliensis JV21] gi|315480588|gb|EFU71230.1| metalloprotease [Campylobacter upsaliensis JV21] Length = 135 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 6/113 (5%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 + ++ L+F ++ + LN ++R +K T+VLSFP +L LG IV+ + + Sbjct: 19 SPKDVELIFVENEEMRELNLKHRNKNKSTDVLSFPLQ----AINEALPLGSIVINKTLAQ 74 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A ++ + L IH LHLLG+DH +KD M E ++ + Sbjct: 75 EKAKEFHHSLKDEISLLFIHAMLHLLGFDH--EKDRGEMRQKEEELIHLFKLP 125 >gi|212692566|ref|ZP_03300694.1| hypothetical protein BACDOR_02063 [Bacteroides dorei DSM 17855] gi|237709119|ref|ZP_04539600.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237724398|ref|ZP_04554879.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265752644|ref|ZP_06088213.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|212664851|gb|EEB25423.1| hypothetical protein BACDOR_02063 [Bacteroides dorei DSM 17855] gi|229437267|gb|EEO47344.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229456815|gb|EEO62536.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263235830|gb|EEZ21325.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 138 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 59/137 (43%), Gaps = 9/137 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + + + + + + + + + E++ +F +I +N +Y D T++ Sbjct: 7 DGVKMPDIKKKETTEWIKEVAACYG---KRVGEIAYIFCSDDKILEVNQQYLQHDYYTDI 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F + + GD+ ++ + + A + ++ L +IIHG LHL G + Sbjct: 64 ITFDYCE------GNRISGDLFISLDTVRTNAEQFEQPYDRELHRVIIHGILHLCGINDK 117 Query: 144 DDKDACVMEGLERSILE 160 + +ME E L Sbjct: 118 GPGEREIMEAAENKALA 134 >gi|260061291|ref|YP_003194371.1| hypothetical protein RB2501_06820 [Robiginitalea biformata HTCC2501] gi|88785423|gb|EAR16592.1| hypothetical protein RB2501_06820 [Robiginitalea biformata HTCC2501] Length = 140 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 16/155 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + E + + + + EL VF + + Sbjct: 1 MRIDYHSETDF---SLPNPAKYTEWIINVLKS-------RELTPGELQFVFCSDDYLLEM 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +Y G D T++L+F + + GDI ++ + I A FE L ++ Sbjct: 51 NHKYLGHDYYTDILTF------ENDLEDGVSGDIFISIDRIRDNAKTYCVPFEEELARVM 104 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 IHG LHL+G+ +K+ +M E + L + Sbjct: 105 IHGVLHLIGFGDSTEKEKEIMRQEESACLRMFHVK 139 >gi|157364821|ref|YP_001471588.1| hypothetical protein Tlet_1970 [Thermotoga lettingae TMO] gi|157315425|gb|ABV34524.1| protein of unknown function UPF0054 [Thermotoga lettingae TMO] Length = 115 Score = 76.2 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 9/112 (8%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI 110 ++ +++SLVF R+ LN EYR ID PT+VL+F S G+I + Sbjct: 6 EDKNIDVSLVFIGERRMRNLNREYRKIDSPTDVLTFFYEEES--------FGEIFICPSQ 57 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILED 161 +E A+ + +E L ++IH LHL GYDH D + M + L + Sbjct: 58 VEKNASKYSQRYEIELFRVLIHACLHLCGYDHEFVDNKSQEMFHRQEKYLRE 109 >gi|328948521|ref|YP_004365858.1| metalloprotease ybeY [Treponema succinifaciens DSM 2489] gi|328448845|gb|AEB14561.1| metalloprotease ybeY [Treponema succinifaciens DSM 2489] Length = 164 Score = 75.8 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 16/120 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA--SSDGCSSLMLGDIVLAYEIIEI 113 E S++F I+ LN YR ID PT+VLSF D L GDI ++ + + Sbjct: 39 EFSILFCSDEYIQYLNKTYRNIDNPTDVLSFENGEKYTDEDNVVWLQAGDIAISVDTLPK 98 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK--------------DACVMEGLERSIL 159 + L LIIHG LHL GYDH ++ +M+ E+ IL Sbjct: 99 NSEYFAVSQNEELKRLIIHGILHLNGYDHGEEHVEKNVEPKCEMLVFQKKLMKDFEQEIL 158 >gi|294644443|ref|ZP_06722206.1| metalloprotein, YbeY family [Bacteroides ovatus SD CC 2a] gi|294810438|ref|ZP_06769095.1| metalloprotein, YbeY family [Bacteroides xylanisolvens SD CC 1b] gi|292640278|gb|EFF58533.1| metalloprotein, YbeY family [Bacteroides ovatus SD CC 2a] gi|294442403|gb|EFG11213.1| metalloprotein, YbeY family [Bacteroides xylanisolvens SD CC 1b] Length = 128 Score = 75.8 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 9/132 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + + + + + + + + E++ +F +I +N +Y D T++++F Sbjct: 2 PDIKKRETTEWIKAVAASYG---KRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIITFDY 58 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + GD+ ++ + I A G +E+ L +IIHG LHL G + + Sbjct: 59 CE------GDRLSGDLFISLDTIHTNAEQFGTSYEDELHRVIIHGILHLCGINDKGPGER 112 Query: 149 CVMEGLERSILE 160 +MEG E L Sbjct: 113 EIMEGAENKALS 124 >gi|78189140|ref|YP_379478.1| hypothetical protein Cag_1173 [Chlorobium chlorochromatii CaD3] gi|123579746|sp|Q3ARE0|RRMF_CHLCH RecName: Full=Probable rRNA maturation factor gi|78171339|gb|ABB28435.1| Protein of unknown function UPF0054 [Chlorobium chlorochromatii CaD3] Length = 156 Score = 75.8 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 6/111 (5%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 I ++ V+ + + +N +Y D PT+ ++F + + G+ ++ ++I Sbjct: 32 EIATITGVYCGNRMSQRINRDYLNHDYPTDTITFCYSEGKAIE------GEFYISLDVIR 85 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 A FE L+ + IH LHL G + ++ M+ E L+ L Sbjct: 86 CNARHFNVTFEEELLRVTIHSALHLTGMNDYLPEERVAMQAKEDYYLQLLK 136 >gi|53711447|ref|YP_097439.1| hypothetical protein BF0156 [Bacteroides fragilis YCH46] gi|60679714|ref|YP_209858.1| hypothetical protein BF0118 [Bacteroides fragilis NCTC 9343] gi|253564495|ref|ZP_04841952.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265764843|ref|ZP_06093118.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|62901265|sp|Q650C1|RRMF_BACFR RecName: Full=Probable rRNA maturation factor gi|81317213|sp|Q5LIY0|RRMF_BACFN RecName: Full=Probable rRNA maturation factor gi|52214312|dbj|BAD46905.1| conserved hypothetical protein [Bacteroides fragilis YCH46] gi|60491148|emb|CAH05896.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] gi|251948271|gb|EES88553.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263254227|gb|EEZ25661.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301161178|emb|CBW20716.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 139 Score = 75.8 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 58/135 (42%), Gaps = 9/135 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 I + + + + + + + ++ I E++ +F +I +N +Y D T++++ Sbjct: 10 IKMPDIKKRETTEWIKAVAAT---YEKRIGEIAYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + + GD+ ++ E ++ + +E L IIHG LHL G + Sbjct: 67 FDYCE------GNRLSGDLFISLETVKTNSEQFNTPYEEELHRTIIHGILHLCGINDKGP 120 Query: 146 KDACVMEGLERSILE 160 + +ME E L Sbjct: 121 GEREIMEAAENKALA 135 >gi|321311000|ref|YP_004193329.1| hypothetical protein HF1_14820 [Mycoplasma haemofelis str. Langford 1] gi|319802844|emb|CBY93490.1| conserved hypothetical protein [Mycoplasma haemofelis str. Langford 1] Length = 132 Score = 75.8 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 13/113 (11%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYE 109 E+ L + I +LN YR DK T+VLSFP S LG I Y Sbjct: 32 FLIPDCEVELAIVNEEEIRSLNATYRNQDKVTDVLSFPVKTES----HERFLGAIYFCYS 87 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 E ++F + +L IH FLHLLGY+H M L+ I Sbjct: 88 ----EVINRNEDFLSGFCYLFIHSFLHLLGYEHG-----EEMFSLQDEIFSRF 131 >gi|255525314|ref|ZP_05392254.1| protein of unknown function UPF0054 [Clostridium carboxidivorans P7] gi|255510986|gb|EET87286.1| protein of unknown function UPF0054 [Clostridium carboxidivorans P7] Length = 120 Score = 75.8 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 17/115 (14%) Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-----------------GDIVLA 107 +I+ +N E R IDK T+VLSFP GDIVL+ Sbjct: 2 KKIKEINKENRNIDKVTDVLSFPMLDYEKGKVFKDTYKDFNFSHVDLDEGSLVLGDIVLS 61 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 E + ++ F +V+L IH LHLLGYDH+++ + +M E ILE Sbjct: 62 LEKAKEQSLEFNHSFIREVVYLTIHSVLHLLGYDHMEEDEKSIMRKREEQILEKF 116 >gi|189347078|ref|YP_001943607.1| hypothetical protein Clim_1583 [Chlorobium limicola DSM 245] gi|238692156|sp|B3EDK3|RRMF_CHLL2 RecName: Full=Probable rRNA maturation factor gi|189341225|gb|ACD90628.1| protein of unknown function UPF0054 [Chlorobium limicola DSM 245] Length = 144 Score = 75.8 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 9/138 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + L E + + V +++ F E+IV + + I +N E+ D T+ ++F Sbjct: 11 KELHEELLERTVIDVLDSEGFGVESIVAV---YCGKKMIRKINREFLQHDYATDTITFRY 67 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + G+ ++ ++IE A +F+ L+ + IH LHL+GYD Sbjct: 68 SDNREID------GEFYISLDVIEENARRFEVDFKLELLRVTIHSALHLIGYDDQTVDGR 121 Query: 149 CVMEGLERSILEDLGIND 166 M+ E L + Sbjct: 122 LQMQQKEEFYLNRYSEAN 139 >gi|189501732|ref|YP_001957449.1| hypothetical protein Aasi_0282 [Candidatus Amoebophilus asiaticus 5a2] gi|238692302|sp|B3ER68|RRMF_AMOA5 RecName: Full=Probable rRNA maturation factor gi|189497173|gb|ACE05720.1| hypothetical protein Aasi_0282 [Candidatus Amoebophilus asiaticus 5a2] Length = 147 Score = 75.8 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 14/152 (9%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 +P+ ++ VE+ + ++ + + + V L+ +F + + Sbjct: 1 MPKANIYYFVEDIQF--KLPNPKIITDWIHNVIQQENCQL-------VNLNFIFCSDNFL 51 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 N +Y D T+V++F A + G+I ++ E + A +F L Sbjct: 52 HKKNLKYLQHDTLTDVITFSYAEDQKNIE-----GEIYISIERVSDNATTYQIDFWQELY 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 ++IHG LHLLGY+ + M E + Sbjct: 107 TVMIHGVLHLLGYNDETLLEQEEMRKKESIYM 138 >gi|21674205|ref|NP_662270.1| hypothetical protein CT1383 [Chlorobium tepidum TLS] gi|62901450|sp|Q8KCN1|RRMF_CHLTE RecName: Full=Probable rRNA maturation factor gi|21647369|gb|AAM72612.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 137 Score = 75.8 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 17/152 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + LQI DE L + +V + + ++ + I + Sbjct: 1 MPLQIFNTTKRTIDETLLAEVIRLVI-----------GEEGGAVGSIEAIYCGNKMIRRI 49 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N ++ G D T+ ++F + G+ ++ ++IE A G FE+ L+ + Sbjct: 50 NRDFLGHDYVTDTITFGYNE------GGEVDGEFYISLDVIESNARRFGVSFEDELLRVT 103 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 IH LHL+GYD + M E L L Sbjct: 104 IHSALHLMGYDDETSELRAAMSLREDHYLYRL 135 >gi|224418521|ref|ZP_03656527.1| putative metalloprotease [Helicobacter canadensis MIT 98-5491] gi|253826924|ref|ZP_04869809.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313142048|ref|ZP_07804241.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|253510330|gb|EES88989.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131079|gb|EFR48696.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 152 Score = 75.8 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 15/154 (9%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 + + L E VF K + +L +K EL + D+ I+ LN Sbjct: 4 KIDFDNQTDF-KISDDLFLFLEKVFDKILLDL-----GLKNKQCEL--LLVDNPTIQNLN 55 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +R DKPT+VLSFP S +LG IV++ + I+ + + + L I Sbjct: 56 KIHRNKDKPTDVLSFPLESDFSP-----LLGSIVISLDFIKQNSEKYHHTPNDEMALLFI 110 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 HG LHLLG+DH +KD E+ +++ + Sbjct: 111 HGILHLLGFDH--EKDRGEQRQKEKELIDFFHLP 142 >gi|217077477|ref|YP_002335195.1| hypothetical protein THA_1410 [Thermosipho africanus TCF52B] gi|226734149|sp|B7ICX7|RRMF_THEAB RecName: Full=Probable rRNA maturation factor gi|217037332|gb|ACJ75854.1| conserved hypothetical protein [Thermosipho africanus TCF52B] Length = 134 Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 8/115 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 V ++LVF D IE LN +YR I+ PT+VL+F +I + ++I+ Sbjct: 26 KDVNVNLVFIDKGEIERLNNQYRNINAPTDVLTFVYGDDDL-------YAEIFVCEDVIK 78 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD-KDACVMEGLERSILEDLGIND 166 A FE L+ ++IH LH+ GYDH D +A M + L+ +++ Sbjct: 79 ENAEKFYNTFEKELLTVLIHAALHVAGYDHEYDTTNAKEMFQKQEEYLKKYDVDN 133 >gi|242054369|ref|XP_002456330.1| hypothetical protein SORBIDRAFT_03g034080 [Sorghum bicolor] gi|241928305|gb|EES01450.1| hypothetical protein SORBIDRAFT_03g034080 [Sorghum bicolor] Length = 632 Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 1/96 (1%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI 110 K + VE+S++ + + I+ LN E+RG ++ T++LS + + LMLGDIV++ E Sbjct: 206 KYDKVEVSVLLCNGNFIQDLNKEWRGENRTTDMLSM-SQYIPDLDVPILMLGDIVISVEA 264 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 +A G + + L++ G LHLLG+ H Sbjct: 265 AARQAEEKGVTLLDEVRVLVVRGILHLLGFQHESSN 300 >gi|209527916|ref|ZP_03276403.1| protein of unknown function UPF0054 [Arthrospira maxima CS-328] gi|209491636|gb|EDZ92004.1| protein of unknown function UPF0054 [Arthrospira maxima CS-328] Length = 152 Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 52/141 (36%), Gaps = 21/141 (14%) Query: 13 LQIAVENALW-------------GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSL 59 L++ +E+ W ++ E F + + L Y ELSL Sbjct: 10 LEVNIEDNFWWGKEGESLRLGELAEKAIAPETWESWFCQWLQQLDP--YLPPAKGYELSL 67 Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIVLAYEIIEI 113 TD I+ N +YR +D+ T+VLSF S LGDI+++ E Sbjct: 68 RLTDDREIQEFNAQYRQLDEATDVLSFAALETSLVMPAEHLSLHPCYLGDIIISVETAFR 127 Query: 114 EANVLGKEFENHLVHLIIHGF 134 +A G L L HG Sbjct: 128 QAQQAGHNLTTELAWLTSHGL 148 >gi|157818335|ref|NP_001101999.1| hypothetical protein LOC361822 [Rattus norvegicus] gi|149043696|gb|EDL97147.1| similar to RIKEN cDNA A130042E20; open reading frame 57 (predicted) [Rattus norvegicus] Length = 164 Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 8/117 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA-------SSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSFP LGD+ Sbjct: 33 KKFDLGIICVDNKNIQNINRIYRNKNVPTDVLSFPFHENLKAGEFPQPRSPDDYNLGDVF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L E I +++ + L HG HLLG+ H + + M E+ +LE+L Sbjct: 93 LGVEYIFQYCKG-NEDYYDVLTVTATHGLCHLLGFTHSSEAEWQKMYNQEKLVLEEL 148 >gi|253568963|ref|ZP_04846373.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251840982|gb|EES69063.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 137 Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 59/135 (43%), Gaps = 9/135 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + + N+ + + + E++ +F +I +N +Y D T++++ Sbjct: 10 VKMPDIKKRETTEWIKNVAASYG---KRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + I A G +++ L +IIHG LHL G + Sbjct: 67 FDYCE------GDRLSGDLFISLDTIRTNAEQFGAAYDDELHRVIIHGILHLCGINDKGP 120 Query: 146 KDACVMEGLERSILE 160 + +ME E L Sbjct: 121 GEREIMEEAENKALA 135 >gi|327398193|ref|YP_004339062.1| metalloprotease ybeY [Hippea maritima DSM 10411] gi|327180822|gb|AEA33003.1| metalloprotease ybeY [Hippea maritima DSM 10411] Length = 144 Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 9/138 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 + + + V L K E EL++V D I LN +++ PTNVL Sbjct: 8 KKPKEFIDQTTIESFVEFLFKKSGENSEK--ELNIVLVDDDEITKLNEQFKNRKGPTNVL 65 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SF +LGDI ++ + IE EA + + +L+ +I HGFLHL+GY H Sbjct: 66 SFYGYDGD-------ILGDIAISSDTIEREALEKKENAKEYLLFIIAHGFLHLVGYTHET 118 Query: 145 DKDACVMEGLERSILEDL 162 M ++ ++++ Sbjct: 119 MDKFDEMMKKQKELVDEF 136 >gi|46446688|ref|YP_008053.1| hypothetical protein pc1054 [Candidatus Protochlamydia amoebophila UWE25] gi|62901435|sp|Q6MCC1|RRMF_PARUW RecName: Full=Probable rRNA maturation factor gi|46400329|emb|CAF23778.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 150 Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 5/141 (3%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 +E H V +I K + E+++ F D+ I L+ +Y D PT+ Sbjct: 8 SNEQHDLKFSLANLDAIVKEVIQKEQQTCD---EVNIYFVDTATICKLHLDYFNDDTPTD 64 Query: 83 VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +SFP + +LG+I + + A + ++HG LHL+GYD Sbjct: 65 CISFPMD--KDENSPYKILGEIFVCPQTAIEYALSHELDPYEETTLYLVHGLLHLMGYDD 122 Query: 143 VDDKDACVMEGLERSILEDLG 163 +++ D +M+ E + L Sbjct: 123 LEENDFLIMKEAEIRHMTHLK 143 >gi|325105734|ref|YP_004275388.1| protein of unknown function UPF0054 [Pedobacter saltans DSM 12145] gi|324974582|gb|ADY53566.1| protein of unknown function UPF0054 [Pedobacter saltans DSM 12145] Length = 145 Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 64/154 (41%), Gaps = 14/154 (9%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + RL + E+ + +I + + K+ + EL+ + + Sbjct: 1 MKRLPINFYKEDISY--KISDINNLRSWINQTIVT-------EKKELQELNFILCSDEYL 51 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 +N EY D T++++F + ++ GD+ ++ E ++ A + G + + L Sbjct: 52 LKINQEYLNHDTYTDIITFDNSED-----EGMIYGDVFISIERVKENARIFGVKTADELH 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 +IIHG LHLLGY ++ +M E L Sbjct: 107 RVIIHGTLHLLGYPDKKKQEKALMTEKENFYLSK 140 >gi|225389159|ref|ZP_03758883.1| hypothetical protein CLOSTASPAR_02905 [Clostridium asparagiforme DSM 15981] gi|225044776|gb|EEG55022.1| hypothetical protein CLOSTASPAR_02905 [Clostridium asparagiforme DSM 15981] Length = 140 Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 23/147 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I E ++ L E + V+ + Y E++++ TD+ I+ + Sbjct: 1 MTITIEYEAE---KQLDLP--YEDIIRDVVNESLD--YEKCPYEAEVNVILTDNQAIQEI 53 Query: 71 NFEYRGIDKPTNVLSFPT----------------AFASSDGCSSLMLGDIVLAYEIIEIE 114 N E+R ID PT+VLSFP + LMLGDIV++ + +E + Sbjct: 54 NREHRQIDAPTDVLSFPMVDYEAPSDFDHVEDAVEDYFNPETGELMLGDIVISVDKVEEQ 113 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYD 141 A G L L+ H LHL GYD Sbjct: 114 AEKYGHSQTRELAFLVAHSMLHLCGYD 140 >gi|126662720|ref|ZP_01733719.1| hypothetical protein FBBAL38_05175 [Flavobacteria bacterium BAL38] gi|126626099|gb|EAZ96788.1| hypothetical protein FBBAL38_05175 [Flavobacteria bacterium BAL38] Length = 139 Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 9/138 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E E + +S +I F + E++ +F + + +N EY D T+++ Sbjct: 7 ETDFLLENEEQYEVWISRIIESEGF---DEGEINYIFCNDEYLHKINVEYLDHDTLTDII 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SF +L+ GDI ++ E ++ AN F+ L ++ HG LH GY Sbjct: 64 SFDY------TVGNLVQGDIFISIERVQDNANDFNVSFDEELKRVLSHGVLHYCGYKDKT 117 Query: 145 DKDACVMEGLERSILEDL 162 KD +M E ++ Sbjct: 118 PKDEALMRSKEEEKMQMF 135 >gi|57505296|ref|ZP_00371225.1| conserved hypothetical protein TIGR00043 [Campylobacter upsaliensis RM3195] gi|57016432|gb|EAL53217.1| conserved hypothetical protein TIGR00043 [Campylobacter upsaliensis RM3195] Length = 135 Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 6/113 (5%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 + ++ L+F ++ + LN ++R +K T+VLSFP +L LG IV+ + + Sbjct: 19 SPKDVELIFVENEEMRELNLKHRNKNKSTDVLSFPLQA----INEALPLGSIVINKTLAQ 74 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A ++ + L IH LHLLG+DH +KD M E ++ + Sbjct: 75 EKAKEFHHSLKDEISLLFIHAMLHLLGFDH--EKDKGEMRQKEEELIHLFKLP 125 >gi|189464937|ref|ZP_03013722.1| hypothetical protein BACINT_01281 [Bacteroides intestinalis DSM 17393] gi|189437211|gb|EDV06196.1| hypothetical protein BACINT_01281 [Bacteroides intestinalis DSM 17393] Length = 136 Score = 75.4 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 6/124 (4%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 +K + + ++ + E++ +F +I +N Y D T++++F Sbjct: 17 SKTTEWIKAVAATYEKRVGEIAYIFCSDEKILEVNRHYLQHDYYTDIITFDYCE------ 70 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 + + GD+ ++ + + A G ++E L +IIHG LHL G + + +ME E Sbjct: 71 GNRLSGDLFISLDTVRTNAEQFGSDYETELHRVIIHGILHLCGINDKGPGEREIMEEAEN 130 Query: 157 SILE 160 L Sbjct: 131 RALA 134 >gi|29348692|ref|NP_812195.1| hypothetical protein BT_3283 [Bacteroides thetaiotaomicron VPI-5482] gi|62901447|sp|Q8A2M2|RRMF_BACTN RecName: Full=Probable rRNA maturation factor gi|29340597|gb|AAO78389.1| conserved hypothetical protein with conserved domain [Bacteroides thetaiotaomicron VPI-5482] Length = 137 Score = 75.4 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 59/135 (43%), Gaps = 9/135 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + + N+ + + + E++ +F +I +N +Y D T++++ Sbjct: 10 VKMPDIKKRETTEWIKNVAASYG---KRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + I A G +++ L +IIHG LHL G + Sbjct: 67 FDY------CQGDRLSGDLFISLDTIRTNAEQFGAAYDDELHRVIIHGILHLCGINDKGP 120 Query: 146 KDACVMEGLERSILE 160 + +ME E L Sbjct: 121 GEREIMEEAENKALA 135 >gi|226355982|ref|YP_002785722.1| metal-dependent hydrolase (metalloprotease) [Deinococcus deserti VCD115] gi|226317972|gb|ACO45968.1| putative metal-dependent hydrolase (metalloprotease) [Deinococcus deserti VCD115] Length = 155 Score = 75.4 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++V I L E+ D T+VLSFPT LGDIV++ + +A Sbjct: 35 EVTVVLVGDRAIRALKLEHWDEDAATDVLSFPTWEPGDPFVPP-HLGDIVISLDTARRQA 93 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 + G + L HG HL G+DH + Sbjct: 94 DARGHSLTREVALLASHGMTHLTGHDHPHAE 124 >gi|332884625|gb|EGK04882.1| metalloprotease [Dysgonomonas mossii DSM 22836] Length = 139 Score = 75.4 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 60/139 (43%), Gaps = 9/139 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 +E+ L ++ + + + + + ++S VF +I +N +Y D T++ Sbjct: 8 EEVKLPSIKKRKTTDWIKLV---ATSYGKQVGDISFVFCSDKKILEVNNQYLQHDYYTDI 64 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F ++ GDI ++ + ++ + G +E L +IIHG LHL G + Sbjct: 65 ITFDYTEND------IISGDIFISVDTVKSNSETFGTNYEEELNRIIIHGILHLCGINDK 118 Query: 144 DDKDACVMEGLERSILEDL 162 + M E L+ L Sbjct: 119 GPGEREYMTECENKALKIL 137 >gi|160880741|ref|YP_001559709.1| hypothetical protein Cphy_2609 [Clostridium phytofermentans ISDg] gi|189039831|sp|A9KMV9|RRMF_CLOPH RecName: Full=Probable rRNA maturation factor gi|160429407|gb|ABX42970.1| protein of unknown function UPF0054 [Clostridium phytofermentans ISDg] Length = 165 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 18/157 (11%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E++ EV+ + + + Y E+++V T++ I+ +N EYR ID PT+VL Sbjct: 10 EVNFDFNEEVLIKEVIEAALD--YEECPYETEINVVLTNNEEIKEINKEYREIDAPTDVL 67 Query: 85 SFPTAFASSD----------------GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 SFP + LMLGDI+++ + + +A G + L Sbjct: 68 SFPMVEFNEPSDFEHVEEEQEDCFHPDSGELMLGDIIVSVDKVFSQAKEFGHSEKRELGF 127 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LI H LHL GYDH+++++ VME +R+IL+ + ++ Sbjct: 128 LIAHSMLHLCGYDHMEEEEREVMEERQRAILDRIHLS 164 >gi|89889741|ref|ZP_01201252.1| conserved hypothetical protein, UPF0054 family [Flavobacteria bacterium BBFL7] gi|89518014|gb|EAS20670.1| conserved hypothetical protein, UPF0054 family [Flavobacteria bacterium BBFL7] Length = 139 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 9/141 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 + + E+ F+K + + S ++I +LS VF + +N +Y D T+++ Sbjct: 7 QFDFKLTDEIYFSKWLDAIASSE---NKSIGDLSYVFCTDEFLLDINQQYLNHDTLTDII 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 +F L+ G+I ++ + ++ A+ F L+ ++ HG LHLLGY Sbjct: 64 TFDYCDD------QLIHGEIYISIDRVKENASDFQVTFTEELLRVMAHGLLHLLGYGDKL 117 Query: 145 DKDACVMEGLERSILEDLGIN 165 D++ +M E + + Sbjct: 118 DEEKVIMRLKEDEKINMFHVK 138 >gi|224437000|ref|ZP_03657981.1| putative metalloprotease [Helicobacter cinaedi CCUG 18818] gi|313143472|ref|ZP_07805665.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313128503|gb|EFR46120.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 202 Score = 75.1 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 24/163 (14%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKE-NIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 EI + + K + + + G + + L +VF DS + +N +RG T+V Sbjct: 15 EIDESSPYKNELEKLLLEIGNLGLIKGDFSHCSLEVVFVDSKTMREINRTHRGKLSTTDV 74 Query: 84 LSFP-------------------TAFASSDGCSSLML--GDIVLAYEIIEIEANVLGKEF 122 LSFP F+ D + G IV+ E+ + + Sbjct: 75 LSFPLECDFMACDFAEGDFMESDFDFSPLDSTAPFERLLGSIVINTELAKAMSESYNHTL 134 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + + L IHGFLH+LG+DH D LE+ I+E +G+ Sbjct: 135 IDEISLLFIHGFLHILGFDHEVDNGEQ--RALEQCIIESIGLK 175 >gi|114326780|ref|YP_743937.1| putative cytoplasmic protein [Granulibacter bethesdensis CGDNIH1] gi|122328235|sp|Q0BVY8|RRMF_GRABC RecName: Full=Probable rRNA maturation factor gi|114314954|gb|ABI61014.1| hypothetical cytosolic protein [Granulibacter bethesdensis CGDNIH1] Length = 176 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 69/156 (44%), Gaps = 17/156 (10%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 +I V W I A+A + +V + + LN Sbjct: 36 EIIVTEPAWRRHIPHADRLIRRVARAAGSTAD------------CVVLSCDRDVRRLNAR 83 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 +RG DKPTNVL+F G G+IVLA ++ EA K +HL HL++HG Sbjct: 84 HRGKDKPTNVLTF-----EPVGMPGAEGGEIVLALGVVLREAKAARKRPVHHLAHLLVHG 138 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 LHL G+DH DA ME E I+ LG+ +P++ Sbjct: 139 VLHLHGHDHHHAGDARRMEAEEARIMRSLGMPNPWK 174 >gi|167753840|ref|ZP_02425967.1| hypothetical protein ALIPUT_02125 [Alistipes putredinis DSM 17216] gi|167658465|gb|EDS02595.1| hypothetical protein ALIPUT_02125 [Alistipes putredinis DSM 17216] Length = 148 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 3/106 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 +++ +F + R+ +N ++ G D T+V++F + + ++ GDI + E + A Sbjct: 37 DVTYIFCSAARLLDMNRQFLGHDYYTDVITFDYSDRK---GARIVSGDIFIDVETVADNA 93 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 G + +++HG LHL G + M E L Sbjct: 94 REYGAAKLTEMRRVVVHGLLHLCGQKDKTPRANAQMHRKEDHYLRQ 139 >gi|325281349|ref|YP_004253891.1| metalloprotease ybeY [Odoribacter splanchnicus DSM 20712] gi|324313158|gb|ADY33711.1| metalloprotease ybeY [Odoribacter splanchnicus DSM 20712] Length = 143 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 7/128 (5%) Query: 37 AKAVSNLISKGYFVKENIV-ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 K + I V ++ +F D I +N +Y D T+V++F Sbjct: 20 DKLICKWIEVIAGHYNKSVGAINFIFCDDDYILAVNRQYLKHDYYTDVITFDYCE----- 74 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 ++ GD+ ++ + ++ + + FEN +I H LHL+G+ D D+ M E Sbjct: 75 -GDILSGDVFISLDTVKSNSEMFSTFFENEFCRVICHSVLHLIGFKDKTDVDSKEMRKNE 133 Query: 156 RSILEDLG 163 L+ L Sbjct: 134 NICLDLLK 141 >gi|212550624|ref|YP_002308941.1| hypothetical protein CFPG_267 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|229554235|sp|B6YQQ8|RRMF_AZOPC RecName: Full=Probable rRNA maturation factor gi|212548862|dbj|BAG83530.1| conserved hypothetical protein [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 139 Score = 74.7 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 59/136 (43%), Gaps = 9/136 (6%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 ++ + + + ++ + +++ +F + I +N Y D T++++F Sbjct: 11 KFPSINRKITTRWIKQIL---IDYNKRAGDITCIFCSNDEILRINNFYLNHDCYTDIITF 67 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 + ++ GD+ +A ++I+ + + L +IIHG LHL G++ K Sbjct: 68 DYSK------GDIISGDLFIALDMIKYNSMKYNVNYFEELYRVIIHGILHLCGFNDKLIK 121 Query: 147 DACVMEGLERSILEDL 162 D VM E LE + Sbjct: 122 DIKVMREGENRALEKI 137 >gi|157273353|gb|ABV27252.1| conserved hypothetical protein [Candidatus Chloracidobacterium thermophilum] Length = 175 Score = 74.7 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 56/148 (37%), Gaps = 29/148 (19%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D L L + + ++ V+++LVF + + LN YRG+D PT+V Sbjct: 14 DRAGLAQLAQATLEAVLGPRLAAA-------VDVNLVFVGDNAMRRLNHIYRGVDAPTDV 66 Query: 84 LSFPTAFASSDG--------------------CSSLMLGDIVLAYEIIEIEANVLGKEFE 123 LSF S +LG++++A A Sbjct: 67 LSFVHLELPSPYTHRRAQREAWFFSRPETGLDEEPPLLGEVIIATPTARRYAERHALTCA 126 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVM 151 + L+IHG +HL GYDH DA M Sbjct: 127 EEIQRLVIHGIIHLCGYDHET--DAGQM 152 >gi|256372050|ref|YP_003109874.1| protein of unknown function UPF0054 [Acidimicrobium ferrooxidans DSM 10331] gi|256008634|gb|ACU54201.1| protein of unknown function UPF0054 [Acidimicrobium ferrooxidans DSM 10331] Length = 181 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 15/105 (14%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---------SLMLGDIVL 106 ELS+VF D+ I +LN YRG PT+VLSF D +LGD+V+ Sbjct: 45 ELSVVFVDAETIASLNARYRGRVGPTDVLSFAIDDVGDDASEHRPSTASGLPTLLGDVVI 104 Query: 107 AYEIIEIEANVL------GKEFENHLVHLIIHGFLHLLGYDHVDD 145 E+ A + + L+IHG LH+ G+DH D Sbjct: 105 CPEVARTNAPEHRGDRGHDGSVGDEVALLLIHGILHIRGWDHEAD 149 >gi|218131741|ref|ZP_03460545.1| hypothetical protein BACEGG_03362 [Bacteroides eggerthii DSM 20697] gi|317474643|ref|ZP_07933917.1| hypothetical protein HMPREF1016_00896 [Bacteroides eggerthii 1_2_48FAA] gi|217986044|gb|EEC52383.1| hypothetical protein BACEGG_03362 [Bacteroides eggerthii DSM 20697] gi|316909324|gb|EFV31004.1| hypothetical protein HMPREF1016_00896 [Bacteroides eggerthii 1_2_48FAA] Length = 137 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 61/138 (44%), Gaps = 10/138 (7%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D I + + + + + + + ++ I E++ +F +I +N +Y D T++ Sbjct: 7 DGIKMPAIKKRETTEWIKAVAAT---YEKRIGEIAYIFCSDEKILEVNRQYLQHDYYTDI 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL-GKEFENHLVHLIIHGFLHLLGYDH 142 ++F + + GD+ ++ + + A G ++E L +IIHG LHL G + Sbjct: 64 ITFDYCE------GNRLSGDLFISLDTVRTNAEQFAGNDYERELHRVIIHGILHLCGIND 117 Query: 143 VDDKDACVMEGLERSILE 160 + +ME E L Sbjct: 118 KGPGEREIMEAAENKALA 135 >gi|198274088|ref|ZP_03206620.1| hypothetical protein BACPLE_00225 [Bacteroides plebeius DSM 17135] gi|198273166|gb|EDY97435.1| hypothetical protein BACPLE_00225 [Bacteroides plebeius DSM 17135] Length = 140 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 9/132 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + + + + + + E++ +F +I +N +Y D T++++F Sbjct: 12 PAIKKRETTAWIKAV---AETYGKKVGEIAYIFCSDEKILEVNRQYLQHDYYTDIITFDY 68 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 GD+ ++ + + A +E L +IIHG LHL G + + Sbjct: 69 CEGKKLS------GDLFISLDTVRTNAEQFDAAYETELYRVIIHGILHLCGINDKGPGER 122 Query: 149 CVMEGLERSILE 160 +ME E LE Sbjct: 123 EIMEAAENKALE 134 >gi|298387060|ref|ZP_06996614.1| metalloprotease [Bacteroides sp. 1_1_14] gi|298260210|gb|EFI03080.1| metalloprotease [Bacteroides sp. 1_1_14] Length = 137 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 9/135 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 I + + + + + N+ + + + E++ +F +I +N +Y D T++++ Sbjct: 10 IKMPDIKKRETTEWIKNVAASYG---KRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + I A G +++ L +IIHG LHL G + Sbjct: 67 FDY------CQGDRLSGDLFISLDTIRTNAEQFGAAYDDELHRVIIHGILHLCGINDKGL 120 Query: 146 KDACVMEGLERSILE 160 + +ME E L Sbjct: 121 GEREIMEEAENKALA 135 >gi|91215358|ref|ZP_01252329.1| hypothetical protein P700755_09598 [Psychroflexus torquis ATCC 700755] gi|91186310|gb|EAS72682.1| hypothetical protein P700755_09598 [Psychroflexus torquis ATCC 700755] Length = 143 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 6/114 (5%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 L+S ++ + EL+ VF + +N Y D T++++F S Sbjct: 25 LLSVIKSEQKTLGELTYVFCSDEYLLDINQSYLQHDTLTDIITFDYTEGDSISTE----- 79 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 I ++ + ++ A G +FE L ++ HG LH GY + ++ +M E Sbjct: 80 -IYISIDRVKENAEEFGVDFEKELKRVMAHGVLHCCGYKDLTQEEKDLMRAKEN 132 >gi|167764038|ref|ZP_02436165.1| hypothetical protein BACSTE_02421 [Bacteroides stercoris ATCC 43183] gi|167698154|gb|EDS14733.1| hypothetical protein BACSTE_02421 [Bacteroides stercoris ATCC 43183] Length = 137 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 60/138 (43%), Gaps = 10/138 (7%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D I + + + + + + + + I E++ +F +I +N +Y D T++ Sbjct: 7 DGIEMPAIKKRETTEWIKAVAAT---YNKRIGEIAYIFCSDEKILEVNRQYLQHDYYTDI 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL-GKEFENHLVHLIIHGFLHLLGYDH 142 ++F + + GD+ ++ + + A G ++E L +IIHG LHL G + Sbjct: 64 ITFDYCE------GNRLSGDLFISLDTVRTNAEQFAGNDYERELYRVIIHGILHLCGIND 117 Query: 143 VDDKDACVMEGLERSILE 160 + +ME E L Sbjct: 118 KGPGEREIMEAAENKALA 135 >gi|108760629|ref|YP_632898.1| cupin domain-containing protein [Myxococcus xanthus DK 1622] gi|123374295|sp|Q1D375|RRMF_MYXXD RecName: Full=Probable rRNA maturation factor gi|108464509|gb|ABF89694.1| cupin domain protein [Myxococcus xanthus DK 1622] Length = 294 Score = 73.9 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 1/129 (0%) Query: 36 FAKAVSNLISKGYFVKE-NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 FA+ ++ E + VELSL D I LN +R DK T+VLSFP Sbjct: 147 FARLLTTWARAYLVQLELSGVELSLSLVDDRAIRRLNRTWRKKDKATDVLSFPAGDLPKG 206 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 LGD+V++ + + +A G+ E+ + + HG LHLLG+DH +DA M L Sbjct: 207 TPGPRPLGDVVISLDTAKRQAKEYGRTLESEMARYLAHGLLHLLGHDHERPRDAKRMAAL 266 Query: 155 ERSILEDLG 163 E +L + G Sbjct: 267 EEQLLGERG 275 >gi|312601107|gb|ADQ90362.1| Putative metalloprotease [Mycoplasma hyopneumoniae 168] Length = 150 Score = 73.9 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 10/155 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 + ++ + + L F K L+ K + L L+ + + L Sbjct: 4 KINFLNQSRIKFKYLKL-------FRKIFKLLVEKE--QITGEISLDLMLITQRKAQKLA 54 Query: 72 FEYRGIDKPTNVLSFPTA-FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 +++ I+ +VLSFP+ + LG+I + I +AN G E +L Sbjct: 55 IKFKSINYIPDVLSFPSNLIIAKKNFRLHFLGEIFMTPAKIIKQANEYGHSEEREFSYLF 114 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +H HLLG+DH D+K +M+ +IL +LGIN Sbjct: 115 VHSIYHLLGFDHQDEKTNKLMDEKVENILINLGIN 149 >gi|319900528|ref|YP_004160256.1| hypothetical protein Bache_0647 [Bacteroides helcogenes P 36-108] gi|319415559|gb|ADV42670.1| protein of unknown function UPF0054 [Bacteroides helcogenes P 36-108] Length = 138 Score = 73.9 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 56/133 (42%), Gaps = 10/133 (7%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + + + + + + + E++ +F +I +N +Y D T++++F Sbjct: 12 PAIKKRETTEWIKAVAASYG---KKTGEIAYIFCSDEKILEVNRQYLQHDYYTDIITFDY 68 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVL-GKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + + GD+ ++ + + A G ++E L +IIHG LHL G + + Sbjct: 69 CE------GNRLSGDLFISLDTVRTNAEQFAGNDYERELYRVIIHGILHLCGINDKGPGE 122 Query: 148 ACVMEGLERSILE 160 +ME E L Sbjct: 123 REIMEEAENKALA 135 >gi|218885681|ref|YP_002435002.1| hypothetical protein DvMF_0577 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756635|gb|ACL07534.1| protein of unknown function UPF0054 [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 171 Score = 73.5 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 20/114 (17%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF--------------------ASSD 94 + L I LN + G PTN+LSFP D Sbjct: 37 CTVELDLVGDEEIARLNAAHLGCTGPTNILSFPAHDGGPHDGAHASSPDRSHGGPHDGPD 96 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + LG +VL+ + E + G+E H + L+ HG HL GYDH + D Sbjct: 97 EDAPCHLGWLVLSLDTWRRECQLYGQEPVEHALRLLAHGLGHLAGYDHGPEMDE 150 >gi|32035698|ref|ZP_00135586.1| COG1444: Predicted P-loop ATPase fused to an acetyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208433|ref|YP_001053658.1| hypothetical protein APL_0957 [Actinobacillus pleuropneumoniae L20] gi|126097225|gb|ABN74053.1| hypothetical protein APL_0957 [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 409 Score = 73.5 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 17/140 (12%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P +DLQIA EN + + + A++ F E+++ D Sbjct: 1 MTTPMIDLQIACEN---SENLPSLEQLTLWVQTALAYEAQTEDF---PETEMTIRIVDEA 54 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP +G +LGD+V+ +++E E E+H Sbjct: 55 ESHELNLTYRGKDKPTNVLSFPFEV--PEGIELPLLGDLVICRQVVEKEVEEQQISLESH 112 Query: 126 LVHLIIHGFLHLLGYDHVDD 145 IH + H + Sbjct: 113 CDE--IH-------HTHQKN 123 >gi|190150279|ref|YP_001968804.1| hypothetical protein APP7_1010 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307245863|ref|ZP_07527948.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254836|ref|ZP_07536662.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259278|ref|ZP_07541007.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307263620|ref|ZP_07545232.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915410|gb|ACE61662.1| hypothetical protein APP7_1010 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306853223|gb|EFM85443.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862207|gb|EFM94175.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866645|gb|EFM98504.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306871043|gb|EFN02775.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 409 Score = 73.5 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 17/140 (12%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P +DLQIA EN + + + A++ F E+++ D Sbjct: 1 MTTPMIDLQIACEN---SENLPSLEQLTLWVQTALAYEAQTEDF---PETEMTIRIVDEA 54 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP +G +LGD+V+ +++E E E+H Sbjct: 55 ESHELNLTYRGKDKPTNVLSFPFEV--PEGIELPLLGDLVICRQVVEKEVEEQQISLESH 112 Query: 126 LVHLIIHGFLHLLGYDHVDD 145 IH + H + Sbjct: 113 CDE--IH-------HTHQKN 123 >gi|242309876|ref|ZP_04809031.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239523877|gb|EEQ63743.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 150 Score = 73.5 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 15/154 (9%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 + + D + E F + + I + + EL + D+ I+ LN Sbjct: 4 KIDFINQT----DYKANQNFLE--FLEKILEKILRDSNLCNKQCEL--LLVDNPTIQALN 55 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +R D PT+VLSFP S L+LG IV++ + ++ + L E+ + L I Sbjct: 56 CSHRNKDMPTDVLSFPLESEFS-----LLLGSIVISLDFVKSASAKLNHSLEDEIALLFI 110 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 HG LHL+G+DH D E I+ + Sbjct: 111 HGALHLIGFDHEIDNGEH--RTKEEEIITFFNLP 142 >gi|212703304|ref|ZP_03311432.1| hypothetical protein DESPIG_01347 [Desulfovibrio piger ATCC 29098] gi|212673264|gb|EEB33747.1| hypothetical protein DESPIG_01347 [Desulfovibrio piger ATCC 29098] Length = 143 Score = 73.5 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 11/139 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + +++ + L + A+ + L S + + D I Sbjct: 1 MMAVRVI---DHYPAGAWLLPVPPRQIARILDALTSAAREAGCPLGPVETHLVDDACIAR 57 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 N Y G PTNVLSFP + G ++L+ + + E + G++ HL+ L Sbjct: 58 ANQRYMGCTGPTNVLSFPGDESLP--------GVMLLSLDTLNRECLLYGQDPAEHLLRL 109 Query: 130 IIHGFLHLLGYDHVDDKDA 148 + H HL GYDH ++ DA Sbjct: 110 LAHSVGHLAGYDHGEEMDA 128 >gi|313206593|ref|YP_004045770.1| hypothetical protein Riean_1103 [Riemerella anatipestifer DSM 15868] gi|312445909|gb|ADQ82264.1| protein of unknown function UPF0054 [Riemerella anatipestifer DSM 15868] gi|315022088|gb|EFT35117.1| predicted metal-dependent hydrolase [Riemerella anatipestifer RA-YM] gi|325335965|gb|ADZ12239.1| uncharacterized protein family UPF0054 [Riemerella anatipestifer RA-GD] Length = 137 Score = 73.5 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 59/136 (43%), Gaps = 7/136 (5%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIV-ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 + + + +S + + + + +++ +F D + +N ++ D T++++F Sbjct: 6 FEEIEPISISTDISKWLEQIILSEHKKLGKINYIFCDDEYLLKINQDHLQHDYYTDIITF 65 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 + + GDI ++ I A+ L K++++ + ++ HG LHL GY ++ Sbjct: 66 DY------VRGNTISGDIFVSLPRISDNASTLSKDYQSEFLRVLAHGVLHLCGYKDKTEE 119 Query: 147 DACVMEGLERSILEDL 162 D M E + Sbjct: 120 DIKEMRNKEDHYINLF 135 >gi|54020099|ref|YP_115737.1| hypothetical protein mhp224 [Mycoplasma hyopneumoniae 232] gi|71893510|ref|YP_278956.1| hypothetical protein MHJ_0154 [Mycoplasma hyopneumoniae J] gi|72080497|ref|YP_287555.1| hypothetical protein MHP7448_0158 [Mycoplasma hyopneumoniae 7448] gi|62901248|sp|Q601H8|RRMF_MYCH2 RecName: Full=Probable rRNA maturation factor gi|123645188|sp|Q4A8K7|RRMF_MYCH7 RecName: Full=Probable rRNA maturation factor gi|123645909|sp|Q4AAH6|RRMF_MYCHJ RecName: Full=Probable rRNA maturation factor gi|53987272|gb|AAV27473.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232] gi|71851637|gb|AAZ44245.1| conserved hypothetical protein [Mycoplasma hyopneumoniae J] gi|71913621|gb|AAZ53532.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 7448] Length = 150 Score = 73.5 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 10/155 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 + ++ + + L F K L+ K + L L+ + + L Sbjct: 4 KINFLNQSRIKFKYLKL-------FRKIFKLLVEKE--QITGEISLDLMLITQRKAQKLA 54 Query: 72 FEYRGIDKPTNVLSFPTA-FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 +++ I+ +VLSFP+ + LG+I + I +AN G E +L Sbjct: 55 IKFKNINYIPDVLSFPSNLIIAKKNFRLHFLGEIFMTPAKIIKQANEYGHSEEREFSYLF 114 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +H HLLG+DH D+K +M+ +IL +LGIN Sbjct: 115 VHSIYHLLGFDHQDEKTNKLMDEKVENILINLGIN 149 >gi|303253550|ref|ZP_07339688.1| hypothetical protein APP2_0738 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302647470|gb|EFL77688.1| hypothetical protein APP2_0738 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 409 Score = 73.5 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 17/140 (12%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P +DLQIA EN + + + A++ F E+++ D Sbjct: 1 MTTPMIDLQIACEN---SENLPSLEQLTLWVQTALAYEAQTEDF---PETEMTIRIVDEA 54 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP +G +LGD+V+ +++E E E+H Sbjct: 55 ESHELNLTYRGKDKPTNVLSFPFEV--PEGIELPLLGDLVICRQVVEKEVEEQQISLESH 112 Query: 126 LVHLIIHGFLHLLGYDHVDD 145 IH + H + Sbjct: 113 CDE--IH-------HTHQKN 123 >gi|329960651|ref|ZP_08298994.1| translation metalloprotein YbeY [Bacteroides fluxus YIT 12057] gi|328532524|gb|EGF59318.1| translation metalloprotein YbeY [Bacteroides fluxus YIT 12057] Length = 137 Score = 73.5 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 7/110 (6%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + I E++ +F +I +N +Y D T++++F + + GD+ ++ + + Sbjct: 32 KRIGEIAYIFCSDEKILEVNRQYLQHDYYTDIITFDYCE------GNRLSGDLFISLDTV 85 Query: 112 EIEANVL-GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 A G ++E L +IIHG LHL G + + +ME E L Sbjct: 86 RTNAEQFAGNDYERELYRVIIHGILHLCGINDKGPGEREIMEEAENKALA 135 >gi|119511142|ref|ZP_01630260.1| hypothetical protein N9414_17021 [Nodularia spumigena CCY9414] gi|119513512|ref|ZP_01632533.1| hypothetical protein N9414_11289 [Nodularia spumigena CCY9414] gi|119461828|gb|EAW42844.1| hypothetical protein N9414_11289 [Nodularia spumigena CCY9414] gi|119464237|gb|EAW45156.1| hypothetical protein N9414_17021 [Nodularia spumigena CCY9414] Length = 175 Score = 73.5 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 66/157 (42%), Gaps = 17/157 (10%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 I V W D F + + +L E+ L TD I++LN + Sbjct: 26 DIRVTAETWSD----------WFHRWLESL--HSDLPPAPSYEIGLRLTDDAEIQSLNAQ 73 Query: 74 YRGIDKPTNVLSFPTAFASSDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 YR DKPT+VLSF L LGDIV++ E +A G L Sbjct: 74 YRHQDKPTDVLSFAALEVDFPQIPEMLVAPLYLGDIVISVNTAERQAQQQGHSLPTELAW 133 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L HG LHLLG+DH D++ M + +L+ + I+ Sbjct: 134 LAAHGLLHLLGWDHPDEEQLMQMLKQQVELLKKISID 170 >gi|255529923|ref|YP_003090295.1| hypothetical protein Phep_0007 [Pedobacter heparinus DSM 2366] gi|255342907|gb|ACU02233.1| protein of unknown function UPF0054 [Pedobacter heparinus DSM 2366] Length = 142 Score = 73.1 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 14/155 (9%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + + + E+ + + +T + A++ +GY ++ EL+ + + Sbjct: 1 MSKASIHFFTEDTSY--RLKNKTQIKDWIRSAIAE---EGYVLR----ELNFILCSDEYL 51 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 +N +Y D T+V++F A ++GDI ++ E ++ A L L Sbjct: 52 LRINQDYLQHDTYTDVITFDNAEELK-----TIVGDIFISIERVQENARALKLPVAEELC 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 ++IHG LHLLGY M E L L Sbjct: 107 RVMIHGTLHLLGYKDKGKAAKATMTTREDHHLAKL 141 >gi|329956354|ref|ZP_08296951.1| translation metalloprotein YbeY [Bacteroides clarus YIT 12056] gi|328524251|gb|EGF51321.1| translation metalloprotein YbeY [Bacteroides clarus YIT 12056] Length = 137 Score = 73.1 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 60/138 (43%), Gaps = 10/138 (7%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + + + + + + + ++ + E++ +F +I +N Y D T++ Sbjct: 7 DGVEMPAIKKRETTEWIKAVAAT---YEKRVGEIAYIFCSDEKILEVNRRYLQHDYYTDI 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL-GKEFENHLVHLIIHGFLHLLGYDH 142 ++F + + GD+ ++ + + A G ++E L +IIHG LHL G + Sbjct: 64 ITFDYCE------GNRLSGDLFISLDTVRTNAEQFAGNDYERELYRVIIHGILHLCGIND 117 Query: 143 VDDKDACVMEGLERSILE 160 + +ME E L Sbjct: 118 KGPGEREIMEAAENKALA 135 >gi|255536700|ref|YP_003097071.1| predicted metal-dependent hydrolase [Flavobacteriaceae bacterium 3519-10] gi|255342896|gb|ACU09009.1| predicted metal-dependent hydrolase [Flavobacteriaceae bacterium 3519-10] Length = 142 Score = 72.7 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 7/136 (5%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVK-ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 + E+ + + + + + L+ VF + +N EY D T++++F Sbjct: 13 FEDIDEIAISPEIKPWLENLLISEGKKPGVLNYVFCSDEYLLKINREYLDHDYLTDIITF 72 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 + GDI ++ I A + F+ L+ + HG LHL GY + Sbjct: 73 DYVKGK------TVSGDIFVSLHRISENALLHDNSFDTELLRVTAHGLLHLCGYKDKTEV 126 Query: 147 DACVMEGLERSILEDL 162 + M E + Sbjct: 127 EISEMRSKEDFYINQF 142 >gi|307564806|ref|ZP_07627334.1| metalloprotein, YbeY family [Prevotella amnii CRIS 21A-A] gi|307346528|gb|EFN91837.1| metalloprotein, YbeY family [Prevotella amnii CRIS 21A-A] Length = 144 Score = 72.7 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 63/137 (45%), Gaps = 9/137 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + +K + + + ++ +F + +I +N EY D T++++ Sbjct: 9 VKMPKIRKRLISKWIKAVAKSHGY---ETGDIGYMFVNDEKILQINNEYLKHDYYTDIIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F A + + GD+V++ + + A + K ++N L +IIHG LHL G + Sbjct: 66 FDYDEA------NTISGDLVISIDTVRTNAELFKKTYQNELERVIIHGILHLCGINDKGP 119 Query: 146 KDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 120 GEREIMEDNENKALILL 136 >gi|126643046|ref|YP_001086030.1| hypothetical protein A1S_3031 [Acinetobacter baumannii ATCC 17978] Length = 110 Score = 72.7 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 50/108 (46%), Positives = 63/108 (58%), Gaps = 3/108 (2%) Query: 65 HRIETLNFEYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 LN +YR DKPTNVLSFP+ +L LGD+V+ ++ EA K Sbjct: 2 EESHQLNLQYREKDKPTNVLSFPSDIPEEVLPMLDALPLGDLVICIPVVLQEALEQKKTA 61 Query: 123 ENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 +NH HL++HG LHLLGYDH D+DA MEGLE IL L I +PY+ Sbjct: 62 QNHFAHLLVHGVLHLLGYDHETSDEDAEEMEGLEIEILAKLNIANPYQ 109 >gi|282858743|ref|ZP_06267896.1| metalloprotein, YbeY/ UPF0054 family [Prevotella bivia JCVIHMP010] gi|282588492|gb|EFB93644.1| metalloprotein, YbeY/ UPF0054 family [Prevotella bivia JCVIHMP010] Length = 144 Score = 72.7 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 9/132 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + +K + + F ++ +F D +I +N EY G D T++++ Sbjct: 9 VKMPKIKKRLISKWIKAVAKSHGF---KTGDIGYMFVDDEKILEVNNEYLGHDYYTDIIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+V++ + + A + K +E+ L +IIHG LHL G + Sbjct: 66 FDYDEDD------TISGDLVISLDTVRTNAELFHKTYEDELERVIIHGILHLCGINDKGP 119 Query: 146 KDACVMEGLERS 157 + +ME E Sbjct: 120 GEREIMEDNENK 131 >gi|269102015|ref|ZP_06154712.1| predicted metal-dependent hydrolase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161913|gb|EEZ40409.1| predicted metal-dependent hydrolase [Photobacterium damselae subsp. damselae CIP 102761] Length = 78 Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 32/76 (42%), Positives = 47/76 (61%) Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 +LGD+V+ +++E EA K H H+++HG LHLLGYDH++D +A ME LE Sbjct: 1 MEMDLLGDLVICRQVVEREAPEQNKTLTAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALE 60 Query: 156 RSILEDLGINDPYEVD 171 I+E +G DPY + Sbjct: 61 TEIMEKMGFPDPYAAE 76 >gi|303284399|ref|XP_003061490.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456820|gb|EEH54120.1| predicted protein [Micromonas pusilla CCMP1545] Length = 689 Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 4/88 (4%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 ELS+ I LN E+RG D T+VLSFP ++ GD+V++ + + Sbjct: 212 AELSVALCGDAYIRALNNEWRGKDVATDVLSFPQDA----FGDFVVFGDVVISVDAARRQ 267 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH 142 A + L+ HGF+HLLGYDH Sbjct: 268 AAAMRHSTRREARVLLTHGFVHLLGYDH 295 >gi|332828365|gb|EGK01074.1| metalloprotease [Dysgonomonas gadei ATCC BAA-286] Length = 139 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 9/139 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 +E+ L ++ + + ++ + K+ + ++S +F +I +N +Y D T++ Sbjct: 8 EEVKLPSIKKRETTSWIKSVAAS---YKKRVGDISFIFCSDKKILEINNQYLQHDYYTDI 64 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F + GDI ++ + ++ A + + +IIHG LHL G + Sbjct: 65 ITFDYTE------GETISGDIFISLDTVKSNAEKFETNYNEEIHRIIIHGILHLCGINDK 118 Query: 144 DDKDACVMEGLERSILEDL 162 + M G E L+ L Sbjct: 119 GPGEREFMTGCENKALKML 137 >gi|296122481|ref|YP_003630259.1| hypothetical protein Plim_2234 [Planctomyces limnophilus DSM 3776] gi|296014821|gb|ADG68060.1| protein of unknown function UPF0054 [Planctomyces limnophilus DSM 3776] Length = 163 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 56/143 (39%), Gaps = 20/143 (13%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D++I D + ++ + ++ F E+S+ D+ +I Sbjct: 1 MIDIEIT-------DHQSIASIDPKPIQTLLKHVFETEGF---PEAEISIALVDNQQIHK 50 Query: 70 LNFEYRGIDKPTNVLSFPTA----------FASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 +N ++ D PT+V+SF + ++G+++++ E A Sbjct: 51 VNRDFLNHDYPTDVISFVLNGSEDSVSHNHDHADPDFPEPLIGEVIVSVETAAGMAAENN 110 Query: 120 KEFENHLVHLIIHGFLHLLGYDH 142 + ++ +HG LHL GYD Sbjct: 111 WCIASEVLLYCLHGSLHLCGYDD 133 >gi|224142850|ref|XP_002324751.1| predicted protein [Populus trichocarpa] gi|222866185|gb|EEF03316.1| predicted protein [Populus trichocarpa] Length = 574 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 70/177 (39%), Gaps = 17/177 (9%) Query: 5 KVNLPRLDLQIAVEN--ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKEN--------- 53 K L + I +E + + + L + A+ Sbjct: 89 KEKDLELSVSICIEEGLPNDPEILSIAELLRLNVPTAMKLAFDSLKSSTFKTRDETITDV 148 Query: 54 ----IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYE 109 +ELS++ + I LN E+R D T+VLS + LMLGDIV++ E Sbjct: 149 GGFDSIELSVMLCNDEFIRKLNKEWRDEDHATDVLSM-SQHVPGLDLPILMLGDIVISVE 207 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC-VMEGLERSILEDLGIN 165 +A G + L++HG LHL G+DH ++A M+ E +LE LG Sbjct: 208 TAARQAEERGHTLIDETRVLLVHGLLHLFGFDHEISEEAEAEMDKEEGVLLESLGWK 264 >gi|194334312|ref|YP_002016172.1| hypothetical protein Paes_1505 [Prosthecochloris aestuarii DSM 271] gi|238693340|sp|B4S8Y8|RRMF_PROA2 RecName: Full=Probable rRNA maturation factor gi|194312130|gb|ACF46525.1| protein of unknown function UPF0054 [Prosthecochloris aestuarii DSM 271] Length = 141 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 9/134 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 R + E + + ++ V E+ L+ V+ + +N E+ D PT+ ++F Sbjct: 11 RDIPEQKLMQVIEGVLGAEGLVIED---LTAVYCGNRLSRRINCEFLQHDYPTDTITFRY 67 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + G++ ++ +I+ A F + L + IH LHL G++ ++ Sbjct: 68 ND------GEAVEGELYISLDIVAENAQRFNVSFTDELFRVTIHSALHLAGFEDTSVEER 121 Query: 149 CVMEGLERSILEDL 162 M+ E L Sbjct: 122 ASMKDKEDHYLNCF 135 >gi|311031636|ref|ZP_07709726.1| putative metalloprotease [Bacillus sp. m3-13] Length = 157 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 15/162 (9%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +++ + E DE + ++ A I G ELS+ F D+ RI+ Sbjct: 1 MIEIDMLDETTKLTDE-QWDDIRNLLIFAAEKESIQPG-------AELSVTFVDNDRIQE 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASS-------DGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 +N EYR D+PT+V+SF D + MLGDI+++ E +A G Sbjct: 53 INREYREKDRPTDVISFAMEELGEGEIEIHYDEEAPRMLGDIIISIPKAEEQAEEYGHSV 112 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + L L +HG LHLLGYDH ++ D +M ++ IL+ G+ Sbjct: 113 KRELGFLALHGLLHLLGYDHENETDEKIMFDKQKEILDAYGL 154 >gi|218961523|ref|YP_001741298.1| hypothetical protein CLOAM1232 [Candidatus Cloacamonas acidaminovorans] gi|167730180|emb|CAO81092.1| conserved hypothetical protein [Candidatus Cloacamonas acidaminovorans] Length = 154 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 14/148 (9%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E+ T+ + ++ LI E+ ++ + DS ++ N YRG+++ T++L Sbjct: 5 ELIGETIIPESEQEKIAELIC-SQEDPEHSYQICVKTVDSETMKHYNKRYRGLNETTDIL 63 Query: 85 SF-----------PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 SF + + DI++ + + + + E ++IHG Sbjct: 64 SFITADLPACAIEERDEEDGFSAKPVRICDIIIDIKRLFQQKGIR--TLEEEYRAVLIHG 121 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILED 161 LHL+GYDH+ DA M E L+ Sbjct: 122 LLHLVGYDHIRSADAEKMNKKEEYYLKQ 149 >gi|104162024|emb|CAJ75732.1| predicted metal-dependent hydrolaseinG [uncultured Thermotogales bacterium] Length = 121 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 7/117 (5%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVL 106 +I L+++ TD IE +N E+R ++PT+VLSF G +GDIV+ Sbjct: 7 AELGDRDIGTLNILLTDDSEIERINKEFRHKNEPTDVLSFQY------GLEEETIGDIVI 60 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDL 162 + + I +A FE L +++IHG LH++GY H D + + L+R Sbjct: 61 SLDRISEQAAEFDNSFEEELYYILIHGVLHVIGYTHHGYDDEGEEIFDLQRDYYTRF 117 >gi|194336788|ref|YP_002018582.1| protein of unknown function UPF0054 [Pelodictyon phaeoclathratiforme BU-1] gi|194309265|gb|ACF43965.1| protein of unknown function UPF0054 [Pelodictyon phaeoclathratiforme BU-1] Length = 139 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 9/136 (6%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 + + E + KAV ++ F E+IV + + + I+ +N E+ G D PT+ ++F Sbjct: 9 KKEIPEQLLEKAVLLVLENEGFTVESIVGV---YCGNKMIQRINREFLGHDYPTDTITFR 65 Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + G+ ++ ++++ A +F+ L+ + +H LHL+GY ++ Sbjct: 66 YNKGAEID------GEFYISLDVVKENAARFSVDFQQELLRVTLHSALHLIGYGDQSAEE 119 Query: 148 ACVMEGLERSILEDLG 163 ++E E L G Sbjct: 120 RRLIEEKEAFYLTRSG 135 >gi|311745076|ref|ZP_07718861.1| putative metalloprotease [Algoriphagus sp. PR1] gi|126577589|gb|EAZ81809.1| putative metalloprotease [Algoriphagus sp. PR1] Length = 141 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 8/143 (5%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 + +E + + ++ K + + S+ F NI EL+ +F + +N EY D Sbjct: 4 NFFQEETNFQLKQKLNRKKWLRKIASEEGF---NISELNYIFCSDEYLYNINVEYLDHDT 60 Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 T++++F + + GDI ++ + ++ +N LG ++ L +I HG HL+G Sbjct: 61 YTDIITFDNSEE-----EQTIEGDIFISIDRVQENSNKLGATLQDELSRVISHGLFHLMG 115 Query: 140 YDHVDDKDACVMEGLERSILEDL 162 Y D +A M E + Sbjct: 116 YKDKDKNEAEEMRNKEEFAINLF 138 >gi|194246695|ref|YP_002004334.1| hypothetical protein ATP_00301 [Candidatus Phytoplasma mali] gi|254801600|sp|B3QZV1|RRMF_PHYMT RecName: Full=Probable rRNA maturation factor gi|193807052|emb|CAP18488.1| conserved hypothetical protein [Candidatus Phytoplasma mali] Length = 148 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 6/128 (4%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 K ++ ++ K +F + ++F +++ +NF YR D T+VLSF Sbjct: 14 KYLTKILKKIFFFVPERQNIHIIFITPLKMKKMNFYYRQKDYDTDVLSFINEIDKD---- 69 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 LGDI + + + ++ + L HG+LHL GY+H + M ++ Sbjct: 70 --SLGDIFINLKKAQKQSQNYNHSLSREVCFLATHGYLHLKGYEHHSKDELKKMLIIQEK 127 Query: 158 ILEDLGIN 165 +L+ + ++ Sbjct: 128 MLKKVDLD 135 >gi|110639867|ref|YP_680077.1| hypothetical protein CHU_3501 [Cytophaga hutchinsonii ATCC 33406] gi|123354224|sp|Q11PC9|RRMF_CYTH3 RecName: Full=Probable rRNA maturation factor gi|110282548|gb|ABG60734.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406] Length = 143 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 7/143 (4%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 E + E L + + N I+K I+EL+ +F + +N ++ Sbjct: 4 ETIFFFKEDTQYQLRQRAEIRTWLNTIAKKEKYS--ILELNYIFCSDEYLLQMNRDFLDH 61 Query: 78 DKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 D T++++F + GDI ++ + ++ A + ++ L ++ HG LHL Sbjct: 62 DYYTDIITFDNSEVKGKIE-----GDIFISIDRVKDNAQLQHSTVKDELHRVLAHGLLHL 116 Query: 138 LGYDHVDDKDACVMEGLERSILE 160 GY K+ +M E + L Sbjct: 117 TGYKDKTTKEKEMMRAKEDASLS 139 >gi|262280176|ref|ZP_06057960.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262257954|gb|EEY76688.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 160 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 8/162 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + ++ E+ L+ K + + + E+ + D + L Sbjct: 1 MKISLTLQQDFLSPELELK---RAQLKKIIETTLRHVGY--NEDCEIGVACVDLAESQQL 55 Query: 71 NFEYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YR DKPTNVLSFP+ + LGD+V+ ++ EA K + H H Sbjct: 56 NLQYREKDKPTNVLSFPSDIPEEVLPMLDAFPLGDLVICIPVVLQEAVEQKKTAQEHFAH 115 Query: 129 LIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 L++HG LHLLGYDH D++A MEGLE IL L I++PY+ Sbjct: 116 LLVHGVLHLLGYDHETSDEEAEEMEGLEVEILAKLNIDNPYQ 157 >gi|95929411|ref|ZP_01312154.1| protein of unknown function UPF0054 [Desulfuromonas acetoxidans DSM 684] gi|95134527|gb|EAT16183.1| protein of unknown function UPF0054 [Desulfuromonas acetoxidans DSM 684] Length = 157 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 9/155 (5%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I +EN +I + F A +++ + ELS+V D +I+ +N +Y Sbjct: 2 IYIENQQQNHDIPI-----TTFKTAAKTILNA--LECPDDTELSVVIVDDDQIQEINRDY 54 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 D PTNV+SF G +LGD+V++ + +A G F + + L+IHG Sbjct: 55 LQRDNPTNVISFAQQEGEGAGICPELLGDVVISADTAARDAAEAGVPFFSEMSFLLIHGI 114 Query: 135 LHLLGYDHV--DDKDACVMEGLERSILEDLGINDP 167 LHLLGYDH ++ A ME ER + L P Sbjct: 115 LHLLGYDHERGTEEQATEMEAKERELFAVLKQAFP 149 >gi|190570991|ref|YP_001975349.1| conserved hypothetical protein TIGR00043 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019508|ref|ZP_03335314.1| hypothetical protein C1A_162 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|238058883|sp|B3CLC0|RRMF_WOLPP RecName: Full=Probable rRNA maturation factor gi|190357263|emb|CAQ54687.1| conserved hypothetical protein TIGR00043 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994930|gb|EEB55572.1| hypothetical protein C1A_162 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|222825043|dbj|BAH22201.1| hypothetical protein [Wolbachia endosymbiont of Cadra cautella] Length = 152 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 8/153 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L++++ + W F + N K + +S+ D + + LN Sbjct: 2 LEVSILDKRWHSITKDPQ----SFVLNIINASLKELKIDHYKPNISIALADDNLLHQLNL 57 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 ++R IDKPTNVLSFP SS+ LGDI +A + IE E++ H H+++H Sbjct: 58 KFREIDKPTNVLSFPCEQLSSECD----LGDIAIAVDTIERESHEYCISILTHTAHMLVH 113 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G LHLLGYDH + + +M+ LE IL L Sbjct: 114 GLLHLLGYDHQKEDEEIIMKSLESKILALLEFE 146 >gi|305665799|ref|YP_003862086.1| hypothetical protein FB2170_05900 [Maribacter sp. HTCC2170] gi|88710565|gb|EAR02797.1| hypothetical protein FB2170_05900 [Maribacter sp. HTCC2170] Length = 140 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 6/106 (5%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 ++ +F + + +N ++ D T++++F +++ GD+ ++ E IE A Sbjct: 36 INFIFCEDDYLLKVNQQHLKHDYFTDIITFDYTD------GNIVSGDVFISTERIEENAG 89 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + G F L+ ++ HG LHLLGY+ + + M E ++ Sbjct: 90 LFGVNFNTELLRVMSHGILHLLGYNDKSEDEVIKMRAKEEEKIKMF 135 >gi|332704887|ref|ZP_08424975.1| metalloprotease ybeY [Desulfovibrio africanus str. Walvis Bay] gi|332555036|gb|EGJ52080.1| metalloprotease ybeY [Desulfovibrio africanus str. Walvis Bay] Length = 157 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 22/165 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + + + L + + + + + + L D I Sbjct: 1 MSVSLFTQTG-----LRLPPVFPLSRHEILELCDPLLDVLGLSGCSFDLHLVDDADIARR 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS------------SLMLGDIVLAYEIIEIEANVL 118 N + G PTNVLSFP ++ LG+IVL+ + +E EA + Sbjct: 56 NAAFMGCVGPTNVLSFPAGSGDTEETDVADVADVFEEGQDHWLGEIVLSVDTLEREAFLY 115 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 G++ HLV L+ H LHL G+DH +M+ L +E LG Sbjct: 116 GQQPREHLVRLLAHAVLHLAGHDHG-----EIMDALTEQAVEALG 155 >gi|256419792|ref|YP_003120445.1| hypothetical protein Cpin_0746 [Chitinophaga pinensis DSM 2588] gi|256034700|gb|ACU58244.1| protein of unknown function UPF0054 [Chitinophaga pinensis DSM 2588] Length = 140 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 8/137 (5%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E+ + + + +L + + + VF + +N ++ D T+++ Sbjct: 9 EVKVNLKNKTKLKAFIKDLFVQEGQRMK---SMQYVFCSDEYLLEINQQFLQHDTLTDIV 65 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 +F + G+I ++ + + A E L +I HG LHL GY Sbjct: 66 TFEMGEDPD-----VTEGEIYISVDRVRENAEKFKVTEEQELHRVIFHGALHLCGYKDKT 120 Query: 145 DKDACVMEGLERSILED 161 + M +E LE Sbjct: 121 KDQSAKMRQMENQCLEQ 137 >gi|54607131|ref|NP_766138.3| rRNA maturation factor homolog [Mus musculus] gi|47115797|sp|Q8CAV0|YBEY_MOUSE RecName: Full=rRNA maturation factor homolog gi|26332258|dbj|BAC29859.1| unnamed protein product [Mus musculus] gi|74202099|dbj|BAE23037.1| unnamed protein product [Mus musculus] gi|148699903|gb|EDL31850.1| RIKEN cDNA A130042E20 [Mus musculus] Length = 164 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 8/117 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA-------SSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSF LGDI Sbjct: 33 KKFDLGIICVDNKTIQNINRIYRNKNVPTDVLSFSFHENLKAGEFPQPHSPDDYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L E I ++ + L HG HLLG+ H + M E+ +LE+L Sbjct: 93 LGVEYILQHCRESE-DYCDVLTVTATHGLCHLLGFTHSSKAEWQKMYNQEKLVLEEL 148 >gi|196001605|ref|XP_002110670.1| hypothetical protein TRIADDRAFT_54920 [Trichoplax adhaerens] gi|190586621|gb|EDV26674.1| hypothetical protein TRIADDRAFT_54920 [Trichoplax adhaerens] Length = 174 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 10/128 (7%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYR-GIDKPTNVLSFPTAFA-------SSDGCSSLM 100 + +++++ ++ +N + T++LSFP S Sbjct: 38 LFELQQFDVAVLLIGQAKMAEINTRFNPDAKGATDILSFPFHENLRASLSSKSILPWECD 97 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LGDI + ++I + + L + HG HLLGY H D+K M ER ILE Sbjct: 98 LGDIFICPKMICQRFDKSI--LQEQLPVYVTHGICHLLGYIHDDEKSQIEMHIKERDILE 155 Query: 161 DLGINDPY 168 + Y Sbjct: 156 KFNRANGY 163 >gi|160888660|ref|ZP_02069663.1| hypothetical protein BACUNI_01077 [Bacteroides uniformis ATCC 8492] gi|270295007|ref|ZP_06201208.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317478000|ref|ZP_07937182.1| hypothetical protein HMPREF1007_00298 [Bacteroides sp. 4_1_36] gi|156861974|gb|EDO55405.1| hypothetical protein BACUNI_01077 [Bacteroides uniformis ATCC 8492] gi|270274254|gb|EFA20115.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316905789|gb|EFV27561.1| hypothetical protein HMPREF1007_00298 [Bacteroides sp. 4_1_36] Length = 137 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 7/110 (6%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + E++ +F +I +N +Y D T++++F + + GD+ ++ + + Sbjct: 32 KRVGEIAYIFCSDEKILEVNRQYLQHDYYTDIITFDYCE------GNRLSGDLFISLDTV 85 Query: 112 EIEANVL-GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 A +E L +IIHG LHL G + + +ME E L Sbjct: 86 RTNAEQFADNNYERELYRVIIHGILHLCGINDKGPGEREIMEEAENKALA 135 >gi|225010333|ref|ZP_03700805.1| protein of unknown function UPF0054 [Flavobacteria bacterium MS024-3C] gi|225005812|gb|EEG43762.1| protein of unknown function UPF0054 [Flavobacteria bacterium MS024-3C] Length = 148 Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 6/106 (5%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 LS +F + + LN Y D T++++F +++ GDI ++ + +E A Sbjct: 45 LSYIFCNDQYLLELNQSYLSHDTFTDIITFDYVE------GTIISGDIFISVDRLEENAA 98 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + FE + ++ HG LHL+GY +D VM E ++ Sbjct: 99 IFKVSFEEERLRVMAHGLLHLMGYKDKSAEDQLVMSNKENEKIKMF 144 >gi|261327447|emb|CBH10422.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 205 Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 33/138 (23%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM----------- 100 VELS+ F R+ LN E+RG+DKPT+VL+FP + + + L Sbjct: 36 PQAVELSIHFVTPGRMHELNLEHRGVDKPTDVLTFPGSGSGTPYAKFLNETVLLARVEGD 95 Query: 101 -------------------LGDIVLAYEIIEIEANV---LGKEFENHLVHLIIHGFLHLL 138 LGDI + E I + + F ++L + H LH L Sbjct: 96 NACVADPSVLAERRALLQELGDIYFSVEYIWMRCSCRPTHCLRFHDYLQAALTHALLHAL 155 Query: 139 GYDHVDDKDACVMEGLER 156 GYDH + M ER Sbjct: 156 GYDHATPEQWKRMTKRER 173 >gi|313676469|ref|YP_004054465.1| hypothetical protein Ftrac_2379 [Marivirga tractuosa DSM 4126] gi|312943167|gb|ADR22357.1| protein of unknown function UPF0054 [Marivirga tractuosa DSM 4126] Length = 142 Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 2/129 (1%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 K + L I EL+ +F + +N ++ D T++++F ++ Sbjct: 16 RKLQKHKAWLKQLAKIYDHEIDELNYIFCSDKFLHKINVDFLDHDTYTDIITFDLKEST- 74 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 ++ + DI ++ + + A L F+ L ++ HG LHL+G++ + D M Sbjct: 75 -TGNNAIESDIFISIDRVTENAENLNLNFKEELARVMAHGLLHLIGFNDKSEADRQEMRE 133 Query: 154 LERSILEDL 162 E +E L Sbjct: 134 AENKAIELL 142 >gi|257471496|ref|ZP_05635495.1| hypothetical protein BaphL_02205 [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|311086173|gb|ADP66255.1| hypothetical protein CWO_02330 [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086746|gb|ADP66827.1| hypothetical protein CWQ_02365 [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087334|gb|ADP67414.1| hypothetical protein CWS_02310 [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087838|gb|ADP67917.1| hypothetical protein CWU_02885 [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 88 Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +SFP F + +LGD+VL IIE E+ K E+H H+ IHG LHLLGYDH Sbjct: 1 MSFP--FNKFIKINYKLLGDLVLCKNIIEKESLKYNKSLESHWAHITIHGTLHLLGYDHQ 58 Query: 144 DDKDACVMEGLERSILEDLGINDPY 168 ++K+A +ME LE I+ L P+ Sbjct: 59 NNKEADIMERLENKIMLSLNYKKPH 83 >gi|225851483|ref|YP_002731717.1| hypothetical protein PERMA_1963 [Persephonella marina EX-H1] gi|254801505|sp|C0QSS1|RRMF_PERMH RecName: Full=Probable rRNA maturation factor gi|225645941|gb|ACO04127.1| conserved hypothetical protein [Persephonella marina EX-H1] Length = 153 Score = 70.8 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 47/140 (33%), Positives = 79/140 (56%), Gaps = 5/140 (3%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 E+ R++ + +AV ++ + + VE+S+ TD I+ +N ++RG DKPT+V Sbjct: 8 KELGDRSITKKFVKEAVEKILEH---LNIDNVEISITLTDDSTIKEINRQWRGKDKPTDV 64 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 LSFP + LGD+V++ + +A +G + ++ L+IHG LHLLGYDH Sbjct: 65 LSFPIDEKPPKYRYRI-LGDVVISLPYAKKQAEEIGLPYREEIIRLLIHGILHLLGYDHE 123 Query: 144 -DDKDACVMEGLERSILEDL 162 +K+A VM L+ I E++ Sbjct: 124 RSEKEAQVMFSLQDEIFENI 143 >gi|120602327|ref|YP_966727.1| hypothetical protein Dvul_1281 [Desulfovibrio vulgaris DP4] gi|120562556|gb|ABM28300.1| protein of unknown function UPF0054 [Desulfovibrio vulgaris DP4] Length = 162 Score = 70.8 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 14/102 (13%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG------------ 102 E+ L D I +N E G PTN+LSFP D + M Sbjct: 39 FEVELTIADDALIAMINEEQLGCIGPTNILSFPAYGDPPDYPADGMECGTGQDAHTSLPL 98 Query: 103 --DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +VL+ + + EA + G+ + H + L+ HG H+ GYDH Sbjct: 99 LGSLVLSVDTLRREAFLYGQPVQEHCLRLLAHGLGHIAGYDH 140 >gi|289704493|ref|ZP_06500929.1| metalloprotein, YbeY/ UPF0054family [Micrococcus luteus SK58] gi|289705007|ref|ZP_06501420.1| metalloprotein, YbeY/ UPF0054family [Micrococcus luteus SK58] gi|289558266|gb|EFD51544.1| metalloprotein, YbeY/ UPF0054family [Micrococcus luteus SK58] gi|289558785|gb|EFD52040.1| metalloprotein, YbeY/ UPF0054family [Micrococcus luteus SK58] Length = 157 Score = 70.4 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I E+ + E L + V+ + E ++ D+ R+ L Sbjct: 1 MAVEILNESGIEVPEDALLRMARHVYTR----------LHVHERAETAVTVVDAARMAEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS---SLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 + E+ + PT+V+S P + +LGD+VL E+ +A G ++ L+ Sbjct: 51 HEEWMDLPGPTDVMSLPMDELTPGSPEAPAEGVLGDVVLCPEVAAEQAARGGHSRDDELL 110 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILED-LGINDP 167 L+ HG LHLLGYDH++D D M GL+ ++ + LG P Sbjct: 111 LLLTHGMLHLLGYDHLEDADREEMFGLQDRLVSEVLGRPAP 151 >gi|210633814|ref|ZP_03297861.1| hypothetical protein COLSTE_01778 [Collinsella stercoris DSM 13279] gi|210159074|gb|EEA90045.1| hypothetical protein COLSTE_01778 [Collinsella stercoris DSM 13279] Length = 169 Score = 70.4 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 7/155 (4%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 ++ L TL E +A++ + V VE+SL + D + LN E+RGID+ T+ Sbjct: 6 SNDAELPTLIEEDEVRAIAAHVLASEGV-AREVEISLSYVDEDEMHELNREWRGIDRTTD 64 Query: 83 VLSFPTA---FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 VLSF + LGD++LA E+I +A G + +++HG LHLLG Sbjct: 65 VLSFECDSAFDEDIPVDEIVELGDVILAPEVIARQAPGFGNSAADECRLMLVHGLLHLLG 124 Query: 140 YDHVDDKDACVMEGLERSILEDLGI---NDPYEVD 171 YDH++D +A VME E ++L +L + DP ++ Sbjct: 125 YDHIEDDEAEVMEAREDALLRELAVMRGEDPSRIE 159 >gi|108804346|ref|YP_644283.1| hypothetical protein Rxyl_1509 [Rubrobacter xylanophilus DSM 9941] gi|122381776|sp|Q1AVV7|RRMF_RUBXD RecName: Full=Probable rRNA maturation factor gi|108765589|gb|ABG04471.1| protein of unknown function UPF0054 [Rubrobacter xylanophilus DSM 9941] Length = 135 Score = 70.4 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 16/121 (13%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + E + ELS+ + I LN ++R D PT+VLSF + + Sbjct: 26 CRRAFVERGLDPERMGELSVALVEPEVIHDLNLKFRNKDAPTDVLSFEVDGPYGEMVGEI 85 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 ++ + L L++HG LHL G DH ++ +A M +++ ++ Sbjct: 86 VICPGCAEMD----------------LEELVVHGALHLSGMDHGENFEASEMARVQKRVM 129 Query: 160 E 160 E Sbjct: 130 E 130 >gi|239917734|ref|YP_002957292.1| conserved hypothetical protein TIGR00043 [Micrococcus luteus NCTC 2665] gi|281413771|ref|ZP_06245513.1| hypothetical protein MlutN2_00957 [Micrococcus luteus NCTC 2665] gi|259645756|sp|C5CCC6|RRMF_MICLC RecName: Full=Probable rRNA maturation factor gi|239838941|gb|ACS30738.1| conserved hypothetical protein TIGR00043 [Micrococcus luteus NCTC 2665] Length = 157 Score = 70.4 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I E+ + E L + V+A+ E ++ D+ R+ L Sbjct: 1 MAVEILNESGIEVPEDALLRMARHVYAR----------LHVHERAETAVTVVDAARMAEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS---SLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 + E+ + PT+V+S P + +LGD+VL E+ +A G ++ L+ Sbjct: 51 HEEWMDLPGPTDVMSLPMDELTPGSPEAPAEGVLGDVVLCPEVAAEQAARGGHSRDDELL 110 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILED-LGINDP 167 L+ HG LHLLGYDHV+D + M L+ ++ + LG P Sbjct: 111 LLLTHGMLHLLGYDHVEDAEREEMFTLQDRLVSEVLGRPAP 151 >gi|240047404|ref|YP_002960792.1| putative metalloprotease mhp224 [Mycoplasma conjunctivae HRC/581] gi|239984976|emb|CAT04969.1| Putative metalloprotease mhp224 [Mycoplasma conjunctivae] Length = 150 Score = 70.4 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 1/105 (0%) Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFP-TAFASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 F +++ ++ + Y+ D +VLSFP +G +G+I++ E I +A Sbjct: 44 FVEANYMQKMCKTYKNKDYIADVLSFPDFLVNKQNGKKLAFIGEILMCPETIYYQAQSYQ 103 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + ++ H HLL YDH+D+++A +M I++ + I Sbjct: 104 HTNKREFCYMFTHSVFHLLNYDHIDEQEAKIMHEKVEKIMQKMEI 148 >gi|34785713|gb|AAH57308.1| RIKEN cDNA A130042E20 gene [Mus musculus] Length = 164 Score = 70.4 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 8/117 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA-------SSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSF LGDI Sbjct: 33 KKFDLGIICVDNKTIQNINRIYRNKNVPTDVLSFSFHENLKAGEFPQPHSPDDYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L E I ++ + L HG HLLG+ H + M E+ +LEDL Sbjct: 93 LGVEYILQHCRESE-DYCDVLTVTATHGLCHLLGFTHSSKAEWQKMYNQEKLVLEDL 148 >gi|296113058|ref|YP_003626996.1| uncharacterized protein family (UPF0054) family protein [Moraxella catarrhalis RH4] gi|295920752|gb|ADG61103.1| uncharacterized protein family (UPF0054) family protein [Moraxella catarrhalis RH4] gi|326560434|gb|EGE10816.1| hypothetical protein E9G_05772 [Moraxella catarrhalis 7169] gi|326561638|gb|EGE11975.1| hypothetical protein E9K_08504 [Moraxella catarrhalis 103P14B1] gi|326562601|gb|EGE12912.1| hypothetical protein E9M_04866 [Moraxella catarrhalis 46P47B1] gi|326563589|gb|EGE13843.1| hypothetical protein E9O_08074 [Moraxella catarrhalis 12P80B1] gi|326565831|gb|EGE15993.1| hypothetical protein E9Q_09660 [Moraxella catarrhalis BC1] gi|326570486|gb|EGE20526.1| hypothetical protein E9U_03828 [Moraxella catarrhalis BC8] gi|326571169|gb|EGE21193.1| hypothetical protein E9S_05602 [Moraxella catarrhalis BC7] gi|326573460|gb|EGE23428.1| hypothetical protein E9Y_09446 [Moraxella catarrhalis 101P30B1] gi|326575642|gb|EGE25565.1| hypothetical protein E9W_01670 [Moraxella catarrhalis CO72] gi|326577106|gb|EGE27000.1| hypothetical protein EA1_04120 [Moraxella catarrhalis O35E] Length = 180 Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 76/154 (49%), Gaps = 11/154 (7%) Query: 26 IHLRTLCEVVFAKAVSNL--------ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 I L + E + L + +S+ + + +N RG Sbjct: 24 IDLNKIVETTLSIMTQKLHHGIDFVYFPDAIQIWHMPKSVSIYVVNHAQGRAVNLAARGK 83 Query: 78 DKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 D TNVLS+P+ + + LG++VL +E++ EA+ K FE+HL HLIIHG L Sbjct: 84 DYATNVLSYPSELPTEMTTLLGEIELGELVLCHEVVLNEADEQNKSFESHLTHLIIHGLL 143 Query: 136 HLLGYDHV-DDKDACVMEGLERSILEDLGINDPY 168 HLLG+DH D DA MEG E IL LGI++PY Sbjct: 144 HLLGFDHEISDADADQMEGFEIEILAQLGIDNPY 177 >gi|46580292|ref|YP_011100.1| hypothetical protein DVU1883 [Desulfovibrio vulgaris str. Hildenborough] gi|62901440|sp|Q72AV7|RRMF_DESVH RecName: Full=Probable rRNA maturation factor gi|46449709|gb|AAS96359.1| conserved hypothetical protein [Desulfovibrio vulgaris str. Hildenborough] gi|311233726|gb|ADP86580.1| protein of unknown function UPF0054 [Desulfovibrio vulgaris RCH1] Length = 162 Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 14/102 (13%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG------------ 102 E+ L D I +N E G PTN+LSFP A D + M Sbjct: 39 FEVELTIADDALIAMINEEQLGCIGPTNILSFPAYGAPPDYPADGMECGTGQDAHTSLPL 98 Query: 103 --DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +VL+ + + EA + G+ + H + L+ HG H+ GYDH Sbjct: 99 LGSLVLSVDTLRREAFLYGQPVQEHCLRLLAHGLGHIAGYDH 140 >gi|325286234|ref|YP_004262024.1| metalloprotease ybeY [Cellulophaga lytica DSM 7489] gi|324321688|gb|ADY29153.1| metalloprotease ybeY [Cellulophaga lytica DSM 7489] Length = 139 Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 50/107 (46%), Gaps = 6/107 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 +++ +F D + +N +Y D T++++F ++ DI ++ E ++ A Sbjct: 35 DINYIFCDDSYLLNINQQYLNHDTYTDIITFDYTDGK------VISSDIYISVERVKENA 88 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +F+ ++ ++ HG LHL GY ++A +M E ++ Sbjct: 89 VDFKVDFDVEMLRVMAHGLLHLAGYKDKSTEEAALMRSKEEEKIKLF 135 >gi|298530259|ref|ZP_07017661.1| protein of unknown function UPF0054 [Desulfonatronospira thiodismutans ASO3-1] gi|298509633|gb|EFI33537.1| protein of unknown function UPF0054 [Desulfonatronospira thiodismutans ASO3-1] Length = 143 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 11/137 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + + L R + + + NL + L+LV TD R++ L Sbjct: 1 MKINVELSAPLVPVLCLSRREVRDIIRRILENLDCR-------ESSLNLVITDDSRMQHL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N + PTNVL+F S LG++ ++ + + E+ + + H V L+ Sbjct: 54 NSAFLFCPGPTNVLAF----EEESRHESGFLGEVFISAQAVIRESILYSQPIFEHFVRLL 109 Query: 131 IHGFLHLLGYDHVDDKD 147 HG HL G++H + + Sbjct: 110 AHGIEHLAGFEHGPEME 126 >gi|116878499|ref|YP_356652.2| hypothetical protein Pcar_1233 [Pelobacter carbinolicus DSM 2380] gi|123770478|sp|Q3A575|RRMF_PELCD RecName: Full=Probable rRNA maturation factor gi|114843135|gb|ABA88482.2| conserved hypothetical protein TIGR00043 [Pelobacter carbinolicus DSM 2380] Length = 150 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 3/140 (2%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKE-NIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 I R + + + + + + E ELSL+ D I+ +N +Y DKPTNV+ Sbjct: 6 IENRQKNQKIAVETLEKVAQRILNDSECPDAELSLLIVDDIEIQQINRDYLQRDKPTNVI 65 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV- 143 SF G +LGD++++ + +A FE+ L L++HG LHLLGYDH Sbjct: 66 SFAMQEGEDVGLHPGLLGDVIISADTAARDAREADLPFESELYFLLLHGVLHLLGYDHER 125 Query: 144 -DDKDACVMEGLERSILEDL 162 ++DA ME E + + Sbjct: 126 GTEEDARRMEAREAELFARI 145 >gi|320334941|ref|YP_004171652.1| metalloprotease ybeY [Deinococcus maricopensis DSM 21211] gi|319756230|gb|ADV67987.1| metalloprotease ybeY [Deinococcus maricopensis DSM 21211] Length = 157 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 4/118 (3%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 A ++ + +++V I L E+ G D T+VLSFPT Sbjct: 13 PAGVRSALRAATDAALAHFGMADRD---VTVVLVGDRAIRALKREHWGEDAATDVLSFPT 69 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 F D LGDIV++ + +A G + L H HL+G+DH + Sbjct: 70 -FVPGDPFVPPHLGDIVISLDTAARQAGARGHSLAREVALLASHAVTHLVGHDHPHAE 126 >gi|72387740|ref|XP_844294.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62359446|gb|AAX79883.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70800827|gb|AAZ10735.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 205 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 33/138 (23%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM----------- 100 VELS+ F R+ LN E+RG+DKPT+VL+FP + + + L Sbjct: 36 PQAVELSIHFVTPGRMHELNLEHRGVDKPTDVLTFPGSGSGTPYAKFLNETVLLARVEGD 95 Query: 101 -------------------LGDIVLAYEIIEIEANV---LGKEFENHLVHLIIHGFLHLL 138 LGDI + E I + + F ++L + H LH L Sbjct: 96 NACVADPSVLAERRALLQELGDIYFSVEYISMRCSCRPTHCLRFHDYLQAALTHALLHAL 155 Query: 139 GYDHVDDKDACVMEGLER 156 GYDH + M ER Sbjct: 156 GYDHATPEQWKRMTKRER 173 >gi|255030168|ref|ZP_05302119.1| putative metalloprotease [Listeria monocytogenes LO28] Length = 86 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + D + MLGDI+++ E E +A G L L +HG LHLLGYDH++ + Sbjct: 8 IDWGEFDLETPRMLGDIIISTEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDHMEPDE 67 Query: 148 ACVMEGLERSILEDLGIN 165 VM GL++ +L+ G+ Sbjct: 68 EKVMFGLQKEVLDAYGLE 85 >gi|330813322|ref|YP_004357561.1| metal-dependent hydrolase [Candidatus Pelagibacter sp. IMCC9063] gi|327486417|gb|AEA80822.1| metal-dependent hydrolase [Candidatus Pelagibacter sp. IMCC9063] Length = 98 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 10/100 (10%) Query: 67 IETLNFEYRGIDKPTNVLSFPTAFA------SSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 ++ LN ++R I K T+VLSFP +++ LGD+ +Y+ I+ + Sbjct: 1 MKKLNKDFRRILKDTDVLSFPHHEKNFFLKRKLPTVNNIYLGDLAFSYDYIKKQ----KT 56 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 F ++ + IHG LHL+GY+H + K+ M LER +L Sbjct: 57 NFVEYVNKIFIHGCLHLVGYEHDNLKNYKEMHSLERKLLA 96 >gi|161833656|ref|YP_001597852.1| hypothetical protein SMGWSS_025 [Candidatus Sulcia muelleri GWSS] gi|172048393|sp|A8Z5Q5|RRMF_SULMW RecName: Full=Probable rRNA maturation factor gi|152206145|gb|ABS30455.1| conserved hypothetical protein SMGWSS_025 [Candidatus Sulcia muelleri GWSS] Length = 141 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 9/127 (7%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E F+K + ++SK + EL+ +F D + +N +Y + T+V++F + Sbjct: 15 EFYFSKWIFFVVSKENKFIK---ELNFIFCDDQYLININNKYLNKNYYTDVITFDNSEDK 71 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 + GDI ++ + I+ + K F + L +IIH LHL+GY + + +M Sbjct: 72 NLD------GDIFISIKRIKYNSLKFKKLFYDELKRVIIHAVLHLIGYKDKKETEKYIMS 125 Query: 153 GLERSIL 159 E L Sbjct: 126 KKEDIYL 132 >gi|222823735|ref|YP_002575309.1| conserved hypothetical protein (UPF0054 domain protein) [Campylobacter lari RM2100] gi|222538957|gb|ACM64058.1| conserved hypothetical protein (UPF0054 domain protein) [Campylobacter lari RM2100] Length = 137 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 7/122 (5%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGD 103 + K + + LV D + +N RG+DK T+VLSFP +LG Sbjct: 12 FLEKIAQKMSDQNIELVLVDEKIMHEINLNQRGVDKTTDVLSFPLVQN-----CENLLGS 66 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 IV+ + + +A E + L IH LHL GYDH + D M E+ +E Sbjct: 67 IVINLDEVSKKAMEYKHSNEEEMALLFIHAMLHLQGYDH--EVDQGQMRQKEQEWIEYFK 124 Query: 164 IN 165 + Sbjct: 125 LP 126 >gi|307261440|ref|ZP_07543111.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868835|gb|EFN00641.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 405 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 17/136 (12%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +DLQIA EN + + + A++ F E+++ D Sbjct: 1 MIDLQIACEN---SENLPSLEQLTLWVQTALAYEAQTEDF---PETEMTIRIVDEAESHE 54 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP +G +LGD+V+ +++E E E+H Sbjct: 55 LNLTYRGKDKPTNVLSFPFEV--PEGIELPLLGDLVICRQVVEKEVEEQQISLESHCDE- 111 Query: 130 IIHGFLHLLGYDHVDD 145 IH + H + Sbjct: 112 -IH-------HTHQKN 119 >gi|307250205|ref|ZP_07532161.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857734|gb|EFM89834.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 405 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 17/136 (12%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +DLQIA EN + + + A++ F E+++ D Sbjct: 1 MIDLQIACEN---SENLPSLEQLTLWVQTALAYEAQTEDF---PETEMTIRIVDEAESHE 54 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP +G +LGD+V+ +++E E E+H Sbjct: 55 LNLTYRGKDKPTNVLSFPFEV--PEGIELPLLGDLVICRQVVEKEVEEQQISLESHCDE- 111 Query: 130 IIHGFLHLLGYDHVDD 145 IH + H + Sbjct: 112 -IH-------HTHQKN 119 >gi|307247949|ref|ZP_07529982.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306855553|gb|EFM87723.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 405 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 17/136 (12%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +DLQIA EN + + + A++ F E+++ D Sbjct: 1 MIDLQIACEN---SENLPSLEQLTLWVQTALAYEAQTEDF---PETEMTIRIVDEAESHE 54 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP +G +LGD+V+ +++E E E+H Sbjct: 55 LNLTYRGKDKPTNVLSFPFEV--PEGIELPLLGDLVICRQVVEKEVEEQQISLESHCDE- 111 Query: 130 IIHGFLHLLGYDHVDD 145 IH + H + Sbjct: 112 -IH-------HTHQKN 119 >gi|284044304|ref|YP_003394644.1| hypothetical protein Cwoe_2850 [Conexibacter woesei DSM 14684] gi|283948525|gb|ADB51269.1| protein of unknown function UPF0054 [Conexibacter woesei DSM 14684] Length = 138 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 62/154 (40%), Gaps = 23/154 (14%) Query: 10 RLDLQIA-VENALWG--DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 L++++ +++ I + LC + F+ A +++ F D+ Sbjct: 1 MLEVEVIGLDDGEVEGLTAIDVEELCGLAFSSA-----------GIEEGHVAVAFVDAET 49 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I+TLN ++RG D PT+VLSFP + + L +I L Sbjct: 50 IQTLNRDHRGRDAPTDVLSFPIDGIDGEALRQIPAAQRELGDVVICPPHTED-------L 102 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 ++HG LHL G DH D M L+ +L Sbjct: 103 SEAVVHGALHLTGMDHEVDD--GEMLALQAELLR 134 >gi|293977768|ref|YP_003543198.1| hypothetical protein DMIN_00240 [Candidatus Sulcia muelleri DMIN] gi|292667699|gb|ADE35334.1| conserved hypothetical protein TIGR00043 [Candidatus Sulcia muelleri DMIN] Length = 141 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 9/127 (7%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E F+K + ++SK + EL+ +F D + +N +Y + T+V++F + Sbjct: 15 EFYFSKWIFFVVSKENKFIK---ELNFIFCDDQYLININNKYLNKNYYTDVITFDNSEEK 71 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 + GDI ++ + I+ + L K F + L +IIH LHL+GY + + +M Sbjct: 72 NLD------GDIFISIKRIKYNSLKLKKLFYDELKRVIIHAVLHLIGYKDKKETEKYIMS 125 Query: 153 GLERSIL 159 E L Sbjct: 126 KKEDIYL 132 >gi|115380060|ref|ZP_01467104.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|310822820|ref|YP_003955178.1| hypothetical protein STAUR_5586 [Stigmatella aurantiaca DW4/3-1] gi|115362935|gb|EAU62126.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|309395892|gb|ADO73351.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 282 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 54/109 (49%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 ELSL I LN +R DK T+VLSFP LGD+V++ + + + Sbjct: 159 CELSLSLVGDRAIRRLNRTWRKKDKATDVLSFPAGELPKGTPGPRQLGDVVISIDTAKRQ 218 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 A G+ E+ + + HG LHLLG+DH DA M LE +L + G Sbjct: 219 AKEYGRTMESEMARYLAHGLLHLLGHDHERTYDARKMATLEEKLLGERG 267 >gi|218513639|ref|ZP_03510479.1| hypothetical protein Retl8_07906 [Rhizobium etli 8C-3] Length = 92 Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 35/91 (38%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNL-ISKGYFVKENIVELSLVFTDSHR 66 + LD+QI++EN W +E L C V A L S+ E+SLVFTD Sbjct: 1 MAELDIQISIENIGWPEEETLLAFCGRVLGAAAVYLRDSEKQPFPTMPPEVSLVFTDDAS 60 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 I+ +N E+RG DK TNVLSFP Sbjct: 61 IQDINAEWRGKDKATNVLSFPAFPVQPGKMP 91 >gi|15605149|ref|NP_219934.1| metalloenzyme [Chlamydia trachomatis D/UW-3/CX] gi|76789155|ref|YP_328241.1| metal-binding protein [Chlamydia trachomatis A/HAR-13] gi|237802849|ref|YP_002888043.1| hypothetical protein JALI_4231 [Chlamydia trachomatis B/Jali20/OT] gi|237804771|ref|YP_002888925.1| hypothetical protein CTB_4231 [Chlamydia trachomatis B/TZ1A828/OT] gi|255311230|ref|ZP_05353800.1| hypothetical protein Ctra62_02190 [Chlamydia trachomatis 6276] gi|255317532|ref|ZP_05358778.1| hypothetical protein Ctra6_02185 [Chlamydia trachomatis 6276s] gi|62901130|sp|O84429|RRMF_CHLTR RecName: Full=Probable rRNA maturation factor gi|123606882|sp|Q3KLS9|RRMF_CHLTA RecName: Full=Probable rRNA maturation factor gi|3328852|gb|AAC68019.1| possible metalloenzyme [Chlamydia trachomatis D/UW-3/CX] gi|76167685|gb|AAX50693.1| hypothetical metal-binding protein [Chlamydia trachomatis A/HAR-13] gi|231273071|emb|CAX09984.1| conserved hypothetical protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231274083|emb|CAX10877.1| conserved hypothetical protein [Chlamydia trachomatis B/Jali20/OT] gi|296435945|gb|ADH18119.1| hypothetical protein G9768_02185 [Chlamydia trachomatis G/9768] gi|296436872|gb|ADH19042.1| hypothetical protein G11222_02190 [Chlamydia trachomatis G/11222] gi|296437806|gb|ADH19967.1| hypothetical protein G11074_02190 [Chlamydia trachomatis G/11074] gi|297140306|gb|ADH97064.1| hypothetical protein CTG9301_02195 [Chlamydia trachomatis G/9301] gi|297748552|gb|ADI51098.1| Hypothetical metal-binding protein [Chlamydia trachomatis D-EC] gi|297749432|gb|ADI52110.1| Hypothetical metal-binding protein [Chlamydia trachomatis D-LC] Length = 161 Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 57/150 (38%), Gaps = 10/150 (6%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 QI + N I L++ +V K + ++ + F D + L+ E Sbjct: 10 QIFISNEQQDVSIDLQSAQRLVV--------LFLELQKVSTDQVYVYFLDDTALAQLHDE 61 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKE-FENHLVHLIIH 132 PT+ ++ P +LG+ ++ + ++ + + ++H Sbjct: 62 QFSDPSPTDTITLPID-KPGIASFPHVLGEAFVSPKAAMRFLEQYTEDQLYHEISRYVVH 120 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDL 162 LH+LGYD D+D +M+ E L L Sbjct: 121 SLLHMLGYDDQTDEDKRIMQEQEDVSLSFL 150 >gi|150020475|ref|YP_001305829.1| hypothetical protein Tmel_0577 [Thermosipho melanesiensis BI429] gi|172048663|sp|A6LKJ3|RRMF_THEM4 RecName: Full=Probable rRNA maturation factor gi|149792996|gb|ABR30444.1| protein of unknown function UPF0054 [Thermosipho melanesiensis BI429] Length = 138 Score = 67.7 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 12/135 (8%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 K + + V ++LVF +I+ +N E+R I+ T+VL+F Sbjct: 10 EKYIRTVDEVTRNELGKEVNINLVFLSKEKIKKINREFRNINSETDVLTFVYGDDDL--- 66 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLE 155 +I L ++IE A +E L+ ++IH LH GYDH DK +A M L+ Sbjct: 67 ----FAEIYLCEDVIEENAKKFSNTYEKELLMVLIHAALHCSGYDHEYDKTNAKKMFDLQ 122 Query: 156 ----RSILEDLGIND 166 L+ G+++ Sbjct: 123 ERYYEKYLKKYGMDN 137 >gi|309807569|ref|ZP_07701521.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 01V1-a] gi|308169175|gb|EFO71241.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 01V1-a] Length = 92 Score = 67.7 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 39/65 (60%) Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 +GD+ + E++E A F + ++HG+LHL GYDH+ D +A VM G++ +LE Sbjct: 15 IGDLFICPEVVEKHATEYETGFYREFGYTLVHGYLHLNGYDHIKDDEAEVMFGIQSKVLE 74 Query: 161 DLGIN 165 + G+ Sbjct: 75 EYGLP 79 >gi|17061813|gb|AAK74139.1| C21orf57 isoform B protein [Homo sapiens] gi|119629700|gb|EAX09295.1| chromosome 21 open reading frame 57, isoform CRA_g [Homo sapiens] Length = 256 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 37/111 (33%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 +L ++ D+ I+ +N YR + PT+VLSFP Sbjct: 165 QKFDLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHEV--------------------- 203 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 HG HLLG+ H + + M E+++L++LG Sbjct: 204 ----------------TATHGLCHLLGFTHGTEAEWQQMFQKEKAVLDELG 238 >gi|119629697|gb|EAX09292.1| chromosome 21 open reading frame 57, isoform CRA_d [Homo sapiens] Length = 124 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 37/111 (33%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 +L ++ D+ I+ +N YR + PT+VLSFP Sbjct: 33 QKFDLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHEV--------------------- 71 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 HG HLLG+ H + + M E+++L++LG Sbjct: 72 ----------------TATHGLCHLLGFTHGTEAEWQQMFQKEKAVLDELG 106 >gi|15835320|ref|NP_297079.1| hypothetical protein TC0705 [Chlamydia muridarum Nigg] gi|270285492|ref|ZP_06194886.1| hypothetical protein CmurN_03563 [Chlamydia muridarum Nigg] gi|270289504|ref|ZP_06195806.1| hypothetical protein CmurW_03658 [Chlamydia muridarum Weiss] gi|301336889|ref|ZP_07225091.1| hypothetical protein CmurM_03620 [Chlamydia muridarum MopnTet14] gi|62901393|sp|Q9PJX1|RRMF_CHLMU RecName: Full=Probable rRNA maturation factor gi|7190736|gb|AAF39519.1| conserved hypothetical protein [Chlamydia muridarum Nigg] Length = 161 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 8/149 (5%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 QI + N +I L+++ +V K + ++ + F + L+ E Sbjct: 10 QIFISNEQQDVDIDLQSVQRLVI--------LFLELQKVSTDQVYIYFLSDAALAQLHDE 61 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 T+ ++ P ++ V + + + + ++H Sbjct: 62 QFSDPSLTDTITLPIDRPGIQSFPHVLGEAFVSPRAAMRFLGQYTEAQLYHEISRYVVHS 121 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDL 162 LH+LGYD D+D +M E S L L Sbjct: 122 LLHMLGYDDQTDEDKRIMREQEDSSLTFL 150 >gi|329942556|ref|ZP_08291366.1| hypothetical protein G5Q_0253 [Chlamydophila psittaci Cal10] gi|332287187|ref|YP_004422088.1| hypothetical metal-binding protein [Chlamydophila psittaci 6BC] gi|313847783|emb|CBY16773.1| conserved hypothetical protein [Chlamydophila psittaci RD1] gi|325506554|gb|ADZ18192.1| hypothetical metal-binding protein [Chlamydophila psittaci 6BC] gi|328815466|gb|EGF85454.1| hypothetical protein G5Q_0253 [Chlamydophila psittaci Cal10] gi|328914434|gb|AEB55267.1| possible metalloenzyme [Chlamydophila psittaci 6BC] Length = 158 Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 4/110 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI-- 113 ++ + F D + L+ E T+ ++ P +LG+ ++ + Sbjct: 41 QVYVYFLDDEALAKLHDEVFSDPSLTDTITLPID-PPGSTSRPHILGEAFISPKAAIRFL 99 Query: 114 -EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + + ++H LH+LGYD ++ M G E L L Sbjct: 100 QDRAEDSDLLYEEISRYVVHSLLHMLGYDDQTPEERKKMRGKENQALCML 149 >gi|258405852|ref|YP_003198594.1| hypothetical protein Dret_1732 [Desulfohalobium retbaense DSM 5692] gi|257798079|gb|ACV69016.1| protein of unknown function UPF0054 [Desulfohalobium retbaense DSM 5692] Length = 144 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 9/102 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 L + T I LN Y G PTNVLSFP + G +VL + + E Sbjct: 45 ASLDIRITTDFGIAGLNARYLGCVGPTNVLSFP---------NEYGGGSLVLNAQAVARE 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 A + ++ H V L+ HG LHL G DH DA +E+ Sbjct: 96 AWLYAQDPLEHWVRLVAHGLLHLYGLDHGPAMDAATETAVEQ 137 >gi|258593723|emb|CBE70064.1| conserved protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 146 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 42/106 (39%), Positives = 56/106 (52%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 + E LV I LN +YRG T+VLSFP S S +LGD+V++ E + Sbjct: 31 DQAECGLVLVGDRTIARLNRQYRGKATSTDVLSFPMREGSFASLSPHLLGDVVISAETAD 90 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +A G+ + L L+IHG LHLLGYDH +A M+ LER Sbjct: 91 RQAKAAGRTLRDELTALLIHGILHLLGYDHQMPSEARRMKRLERQF 136 >gi|269303385|gb|ACZ33485.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN] Length = 158 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 57/160 (35%), Gaps = 14/160 (8%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + ++ + ++ E + + K V L+ E+ + F + Sbjct: 1 MTQEKIKIHVSNEQTCIP-------IHLISVEKLVLTLLEHLKVTTN---EIFIYFLEDK 50 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYE---IIEIEANVLGKEF 122 + L+ + T+ ++ P A D +LG+ ++ + + ++ Sbjct: 51 ALAELHDKVFADPSLTDTITLPID-APGDPAYPHVLGEAFISPQAALRFLENTSPNQEDI 109 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + ++H LH+LGYD ++ M E IL L Sbjct: 110 YEEISRYLVHSILHMLGYDDTSSEEKRKMRVKENQILRML 149 >gi|62184873|ref|YP_219658.1| hypothetical protein CAB231 [Chlamydophila abortus S26/3] gi|81312950|sp|Q5L6N4|RRMF_CHLAB RecName: Full=Probable rRNA maturation factor gi|62147940|emb|CAH63687.1| conserved hypothetical protein [Chlamydophila abortus S26/3] Length = 158 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 4/110 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI-- 113 ++ + F D + L+ E T+ ++ P + +LG+ ++ + Sbjct: 41 QVYVYFLDDEALAQLHDEVFADPSLTDTITLPID-SPESTAHPHILGEAFISPKAAIRFL 99 Query: 114 -EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + + ++H LH+LGYD ++ M G E L L Sbjct: 100 QDRAEDTDLLYEEISRYVVHSLLHMLGYDDQTPEERKKMRGKENQALCML 149 >gi|84999364|ref|XP_954403.1| hypothetical protein [Theileria annulata] gi|65305401|emb|CAI73726.1| hypothetical protein, conserved [Theileria annulata] Length = 524 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 20/136 (14%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS-----------FPTAFASSDG 95 +K L + D ++ +NFE G +KPT+++S F + Sbjct: 376 KQELKVEDFMLDIFIEDEKNMKRINFEQFGGNKPTDIISLRDDLLYLKSDFHKNRSPLKP 435 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGK---------EFENHLVHLIIHGFLHLLGYDHVDDK 146 LG+I + +IE E + G + + ++ HG LHLLGYDH + Sbjct: 436 PEHYHLGEIFICPGVIESENMIRGGVAARMKGISDINIRMCFIMAHGILHLLGYDHEKAE 495 Query: 147 DACVMEGLERSILEDL 162 M +E ++L++ Sbjct: 496 WFREMAEMEDALLDEF 511 >gi|323359831|ref|YP_004226227.1| metal-dependent hydrolase [Microbacterium testaceum StLB037] gi|323276202|dbj|BAJ76347.1| predicted metal-dependent hydrolase [Microbacterium testaceum StLB037] Length = 155 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 14/156 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I E+ DE L L E ++++V D +E+L Sbjct: 1 MTIEINNESGYDIDEQVLLRLMEYNL----------AELHVSADADVAIVLVDEGAMESL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM----LGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ PT+VLSFP + LGDIVL + E +A ++ L Sbjct: 51 HVQWMDEPGPTDVLSFPMDELRPGSEDAPTPAGLLGDIVLCPSVAEAQAVTAQHSTQDEL 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L HG LHLLG+DH + + M GL+R ++ Sbjct: 111 ILLTTHGLLHLLGFDHAEPDEEREMFGLQRELITGF 146 >gi|281341183|gb|EFB16767.1| hypothetical protein PANDA_007691 [Ailuropoda melanoleuca] Length = 137 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 8/105 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA-------SSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSFP D LGDI Sbjct: 33 QKFDLGIICVDNKNIQHINRMYREKNIPTDVLSFPFHENIKAGELPQPDFQDDYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 L E I + ++ + L HG HLLG+ H + + Sbjct: 93 LGVEYIFQQCRGHE-DYYDILTVTATHGLCHLLGFTHSTEAEWQK 136 >gi|166154635|ref|YP_001654753.1| hypothetical protein CTL0681 [Chlamydia trachomatis 434/Bu] gi|166155510|ref|YP_001653765.1| hypothetical protein CTLon_0677 [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|255348789|ref|ZP_05380796.1| hypothetical protein Ctra70_02230 [Chlamydia trachomatis 70] gi|255503329|ref|ZP_05381719.1| hypothetical protein Ctra7_02240 [Chlamydia trachomatis 70s] gi|255507008|ref|ZP_05382647.1| hypothetical protein CtraD_02220 [Chlamydia trachomatis D(s)2923] gi|301335902|ref|ZP_07224146.1| hypothetical protein CtraL_03715 [Chlamydia trachomatis L2tet1] gi|226702063|sp|B0B7Z4|RRMF_CHLT2 RecName: Full=Probable rRNA maturation factor gi|226702064|sp|B0BC59|RRMF_CHLTB RecName: Full=Probable rRNA maturation factor gi|165930623|emb|CAP04120.1| conserved hypothetical protein [Chlamydia trachomatis 434/Bu] gi|165931498|emb|CAP07074.1| conserved hypothetical protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|289525466|emb|CBJ14943.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2] gi|296435018|gb|ADH17196.1| hypothetical protein E150_02215 [Chlamydia trachomatis E/150] gi|296438738|gb|ADH20891.1| hypothetical protein E11023_02200 [Chlamydia trachomatis E/11023] Length = 161 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 56/150 (37%), Gaps = 10/150 (6%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 QI + N I L++ +V K + ++ + F D + L+ E Sbjct: 10 QIFISNEQQDVSIDLQSAQRLVV--------LFLELQKVSTDQVYVYFLDDTALAQLHDE 61 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKE-FENHLVHLIIH 132 T+ ++ P +LG+ ++ + ++ + + ++H Sbjct: 62 QFSDPSLTDTITLPID-KPGIASFPHVLGEAFVSPKAAMRFLEQYTEDQLYHEISRYVVH 120 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDL 162 LH+LGYD D+D +M+ E L L Sbjct: 121 SLLHMLGYDDQTDEDKRIMQEQEDVSLSFL 150 >gi|261749198|ref|YP_003256883.1| hypothetical protein BPLAN_108 [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497290|gb|ACX83740.1| conserved hypothetical protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 137 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 51/108 (47%), Gaps = 7/108 (6%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + ++ +F + H + LN +Y D T+V++F + + GD+ ++ + + Sbjct: 32 KEVGNINYIFCNDHYLLNLNKKYLQKDYYTDVIAFAYSSTPPNIS-----GDVFISIDRV 86 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + + F+ L ++IH LH LGY+ ++ +M+ E L Sbjct: 87 LENSQQWNQLFQVELKRVMIHAILHFLGYEDRINE--KLMKKKEEFYL 132 >gi|298711736|emb|CBJ32782.1| conserved unknown protein [Ectocarpus siliculosus] Length = 296 Score = 65.4 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 43/148 (29%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF--------ASSDGCSSLMLGDIVLA 107 ++ V T + LN +YRG+ T++LSFP + + LGD+ ++ Sbjct: 139 DVGAVLTTDKEVFRLNRQYRGMSTSTDILSFPNHDMSGSPGVLPKVRFPAEMDLGDMFIS 198 Query: 108 YEIIEIEANVLG-----------------------------------KEFENHLVHLIIH 132 ++ + + + L++H Sbjct: 199 LAYVDRQIKRDREEQAAAVAAAAAGGGGQEEEWWDSERGVSGAMSRVFDVQERASMLLVH 258 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILE 160 G +HLLGYDH + D M +E +L Sbjct: 259 GLIHLLGYDHETESDYKAMVAVEEEVLR 286 >gi|29840002|ref|NP_829108.1| hypothetical protein CCA00235 [Chlamydophila caviae GPIC] gi|62901358|sp|Q824B8|RRMF_CHLCV RecName: Full=Probable rRNA maturation factor gi|29834349|gb|AAP04986.1| conserved hypothetical protein [Chlamydophila caviae GPIC] Length = 158 Score = 65.4 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 55/157 (35%), Gaps = 10/157 (6%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + ++ +Q+ + N I +++ AK + + + V + V + F D + Sbjct: 1 MKKVSIQVCISNKQNDVPIRIQS------AKKLVLYCLQHWEVHTDQVY--IYFLDDESL 52 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVL--AYEIIEIEANVLGKEFENH 125 L+ E T+ ++ P + ++ + A + Sbjct: 53 AQLHDEVFSDPSLTDTITLPIDSPGTSSQPHILGEAFISPKAAIRFLKDRAEDSDLLYEE 112 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + +IH LH+LGYD ++ M E L L Sbjct: 113 ISRYVIHSLLHMLGYDDQTPEERKKMRVKENQALCML 149 >gi|313813039|gb|EFS50753.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL025PA1] gi|327330796|gb|EGE72542.1| putative metalloprotease [Propionibacterium acnes HL097PA1] Length = 155 Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 14/152 (9%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I E+ +E L L + ELS++ D +E + Sbjct: 2 IDITNESGSPSNEEGLVGLATFALD----------WLRIHPSSELSIILVDEETMEAYHE 51 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLM----LGDIVLAYEIIEIEANVLGKEFENHLVH 128 ++ G+ PT+VLSFP + G LGDIVL + +A G+ + + Sbjct: 52 KFMGLPGPTDVLSFPMDEMRAPGDDEDPPSGLLGDIVLCPTVTARQAAENGRTPDGEAEY 111 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 L+IHG LHLLGYDH + + VM L I+ Sbjct: 112 LLIHGLLHLLGYDHAEPGEKRVMFRLNDEIIA 143 >gi|15618420|ref|NP_224705.1| metalloenzyme [Chlamydophila pneumoniae CWL029] gi|15836040|ref|NP_300564.1| metalloenzyme [Chlamydophila pneumoniae J138] gi|16752534|ref|NP_444796.1| hypothetical protein CP0245 [Chlamydophila pneumoniae AR39] gi|33241861|ref|NP_876802.1| hypothetical protein CpB0530 [Chlamydophila pneumoniae TW-183] gi|62901395|sp|Q9Z843|RRMF_CHLPN RecName: Full=Probable rRNA maturation factor gi|4376797|gb|AAD18649.1| predicted Metalloenzyme [Chlamydophila pneumoniae CWL029] gi|7189172|gb|AAF38109.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39] gi|8978879|dbj|BAA98715.1| metalloenzyme [Chlamydophila pneumoniae J138] gi|33236370|gb|AAP98459.1| hypothetical protein CpB0530 [Chlamydophila pneumoniae TW-183] Length = 158 Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 14/160 (8%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + ++ + ++ E + V K V L+ E+ + F + Sbjct: 1 MTQEKIKIHVSNEQTCIP-------IHLVSVEKLVLTLLEHLKVTTN---EIFIYFLEDK 50 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYE---IIEIEANVLGKEF 122 + L+ + T+ ++ P A D +LG+ ++ + + ++ Sbjct: 51 ALAELHDKVFADPSLTDTITLPID-APGDPAYPHVLGEAFISPQAALRFLENTSPNQEDI 109 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + ++H LH+LGYD ++ M E IL L Sbjct: 110 YEEISRYLVHSILHMLGYDDTSSEEKRKMRVKENQILCML 149 >gi|322436562|ref|YP_004218774.1| protein of unknown function UPF0054 [Acidobacterium sp. MP5ACTX9] gi|321164289|gb|ADW69994.1| protein of unknown function UPF0054 [Acidobacterium sp. MP5ACTX9] Length = 155 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 7/126 (5%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 ++ +++ E+ ++ T I+ LN +RG +K T+VLSFP Sbjct: 21 LARFLNRAREAVGLDGEVEVLLTSDVEIKRLNKAFRGKNKATDVLSFPAPEEFEG----- 75 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + GD+ ++ + +A G + + L++HG LHL G DH D M E + Sbjct: 76 VAGDLAVSLDTAAKQAAEHGHGLRDEVRILLLHGLLHLAGEDHETDS--GEMAAREAELR 133 Query: 160 EDLGIN 165 ++LG+ Sbjct: 134 KELGLP 139 >gi|167737213|ref|ZP_02409987.1| hypothetical protein Bpse14_04056 [Burkholderia pseudomallei 14] Length = 231 Score = 64.7 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 10/120 (8%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L +AV+ DEI + K ++ + F + + ++ F + LN Sbjct: 122 ELDLAVQYG---DEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGRALN 175 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D TNVL+F + + D+VL ++E EA GK H HL++ Sbjct: 176 HSYRHKDYATNVLTFAYGEEPDG----VTVADLVLCCPVVEKEAREQGKTLVAHYAHLLV 231 >gi|145559544|sp|P75209|RRMF_MYCPN RecName: Full=Probable rRNA maturation factor Length = 154 Score = 64.7 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 8/124 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELS------LVFTDSHRIETLNFEYRGIDK 79 I+ L + F K I + ++ ++LS L+ +++ LN ++ Sbjct: 7 INSNYLFKRFFGKNFEAGIELCLQIIKDSLQLSFQPEFALMIVSPWKMKRLNRQFLNRKG 66 Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 T+V+S + +G+I L + I +A G L +IHG LHL Sbjct: 67 VTDVISICYNENEAGFSP--AIGEIFLCPKHIFKQAKQFGCTPWFLLTRNLIHGLLHLFE 124 Query: 140 YDHV 143 +DH Sbjct: 125 FDHE 128 >gi|89898578|ref|YP_515688.1| hypothetical protein CF0771 [Chlamydophila felis Fe/C-56] gi|123482931|sp|Q253J5|RRMF_CHLFF RecName: Full=Probable rRNA maturation factor gi|89331950|dbj|BAE81543.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56] Length = 158 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 49/139 (35%), Gaps = 4/139 (2%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 + + + A ++ + K ++ + F D + ++ E T+ ++ Sbjct: 12 NKQKDVPIRVQSAKKLVLCCLQYWKITTDQVYIYFLDDKALAQIHDEVFSDPSLTDTITL 71 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKE---FENHLVHLIIHGFLHLLGYDHV 143 P + +LG+ ++ + ++ + ++H LH+LGYD Sbjct: 72 PID-SPGISSHPHVLGEAFISPKAAIRFLKDRSQDSDLLYEEISRYVVHSLLHMLGYDDQ 130 Query: 144 DDKDACVMEGLERSILEDL 162 ++ M E L L Sbjct: 131 TPEERKKMRVKENQALCML 149 >gi|153005571|ref|YP_001379896.1| hypothetical protein Anae109_2711 [Anaeromyxobacter sp. Fw109-5] gi|166228436|sp|A7HDW6|RRMF_ANADF RecName: Full=Probable rRNA maturation factor gi|152029144|gb|ABS26912.1| protein of unknown function UPF0054 [Anaeromyxobacter sp. Fw109-5] Length = 192 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 3/105 (2%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 E+S++ RI LN E+RG D T+VLSFP + S +LGD+V++ + Sbjct: 34 DAEISILLVGDRRIRALNREWRGKDAATDVLSFPLSEPP---GSGPLLGDVVISLDTAAR 90 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 A + L + HG LHLLGYDH DA M E + Sbjct: 91 RARQERRAVGAELDRYLAHGLLHLLGYDHERPADARRMARKEAEL 135 >gi|301633286|gb|ADK86840.1| translation metalloprotein YbeY [Mycoplasma pneumoniae FH] Length = 143 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 2/88 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E +L+ +++ LN ++ T+V+S + +G+I L + I +A Sbjct: 32 EFALMIVSPWKMKRLNRQFLNRKGVTDVISICYNENEAGFSP--AIGEIFLCPKHIFKQA 89 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHV 143 G L +IHG LHL +DH Sbjct: 90 KQFGCTPWFLLTRNLIHGLLHLFEFDHE 117 >gi|108885108|ref|NP_073061.2| hypothetical protein MG_388 [Mycoplasma genitalium G37] gi|255660098|ref|ZP_05405507.1| hypothetical protein MgenG_00575 [Mycoplasma genitalium G37] gi|145559543|sp|P47628|RRMF_MYCGE RecName: Full=Probable rRNA maturation factor gi|84626130|gb|AAC71615.2| expressed protein of unknown function [Mycoplasma genitalium G37] gi|166078687|gb|ABY79305.1| expressed protein of unknown function [synthetic Mycoplasma genitalium JCVI-1.0] Length = 154 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 8/130 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELS------LVFTDSHRIETLNFEYRGIDK 79 I+ L + F K + + + ++ + LS L+ +++ LN ++ Sbjct: 7 INSSRLFKRFFGKNYQAGVELCFQIIKSSLNLSFDPEFALLIVSCSKMKKLNKQFLKRRG 66 Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 T+V+S + L +G+I L + I +A +G L +IHG LHL Sbjct: 67 CTDVISLCYNETETGFS--LAIGEIFLCPKYIFKKAKEIGCNNWFLLTRCLIHGILHLFE 124 Query: 140 YDHVDDKDAC 149 ++H + + Sbjct: 125 FNHEESEAFE 134 >gi|303326746|ref|ZP_07357188.1| cupin domain protein [Desulfovibrio sp. 3_1_syn3] gi|302862734|gb|EFL85666.1| cupin domain protein [Desulfovibrio sp. 3_1_syn3] Length = 141 Score = 63.9 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 10/117 (8%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + L + + + ++ + VEL L+ D + N + PTNVLS Sbjct: 14 LPLNRRELALALRIMLRALADAERGAPDSVELHLL--DDAAVSAANRRFMNCIGPTNVLS 71 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 FP ++L+ + + E + G+E H + L+ HG HL G DH Sbjct: 72 FPGGEDLPGI--------LLLSLDTLARECLLYGQEPAEHALRLLAHGMGHLAGLDH 120 >gi|218247079|ref|YP_002372450.1| hypothetical protein PCC8801_2275 [Cyanothece sp. PCC 8801] gi|257060149|ref|YP_003138037.1| hypothetical protein Cyan8802_2326 [Cyanothece sp. PCC 8802] gi|218167557|gb|ACK66294.1| protein of unknown function UPF0054 [Cyanothece sp. PCC 8801] gi|256590315|gb|ACV01202.1| protein of unknown function UPF0054 [Cyanothece sp. PCC 8802] Length = 178 Score = 63.9 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 9/137 (6%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS-------FP 87 + L K + EL+L T+ I+TLN +YR ++PT+VL+ FP Sbjct: 40 WIKTWLEAL--KPNLPPADTYELTLRLTEDLEIQTLNAQYRQKNQPTDVLAFAALEVDFP 97 Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 L LGDI+++ E +A L L HG LHLLG+DH D+ Sbjct: 98 VPAEEIAALEPLYLGDIIISVETANKQAQQNHHSLLVELAWLAAHGLLHLLGWDHPDEDS 157 Query: 148 ACVMEGLERSILEDLGI 164 M + ++L +G+ Sbjct: 158 LEAMLSQQETLLTLVGL 174 >gi|189219763|ref|YP_001940404.1| metal-dependent hydrolase [Methylacidiphilum infernorum V4] gi|189186621|gb|ACD83806.1| Predicted metal-dependent hydrolase [Methylacidiphilum infernorum V4] Length = 117 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 13/105 (12%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + V + ++ + PT+V+SF G+I++ + E EA Sbjct: 14 IHFVLLPEKTMGEVHNLFFRDPHPTDVISFD-------------YGEILICPSVAEKEAR 60 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 ++ IHG LHL G D +++ ME ++ SILE Sbjct: 61 QRSIAVLKEVLLYGIHGMLHLCGMDDDKEEERKRMEQVQESILEK 105 >gi|239907522|ref|YP_002954263.1| hypothetical protein DMR_28860 [Desulfovibrio magneticus RS-1] gi|239797388|dbj|BAH76377.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 141 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+ G+ PTN+LSFP D LG++ L+ + + EA + G+ H+ L+ Sbjct: 52 NGEFLGLPGPTNILSFPAE----DPDRPDYLGELALSLDAVRREAFLYGQPPGLHMARLL 107 Query: 131 IHGFLHLLGYDH 142 HGFLHL G DH Sbjct: 108 AHGFLHLAGLDH 119 >gi|188585826|ref|YP_001917371.1| protein of unknown function UPF0054 [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350513|gb|ACB84783.1| protein of unknown function UPF0054 [Natranaerobius thermophilus JW/NM-WN-LF] Length = 141 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 66/137 (48%), Gaps = 8/137 (5%) Query: 36 FAKAVSNLISK-GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS- 93 K V + K + + E+ L+ D+ I+ LN +YR K T+VLSFP Sbjct: 2 LTKIVETTLQKVKKEIANSPGEVGLMIVDAETIKELNRDYRNQYKSTDVLSFPQYQEDDL 61 Query: 94 ---DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 D L+LGDIV++ + +A+ G E L L +HG LHLLGYDH ++ Sbjct: 62 VERDSDDYLLLGDIVISESAVLDQADKYGHSIERELAFLFLHGLLHLLGYDHEKEEAQSE 121 Query: 151 ---MEGLERSILEDLGI 164 M L+ IL LGI Sbjct: 122 EESMFVLQEEILSSLGI 138 >gi|162448297|ref|YP_001610664.1| hypothetical protein sce0028 [Sorangium cellulosum 'So ce 56'] gi|161158879|emb|CAN90184.1| hypothetical protein sce0028 [Sorangium cellulosum 'So ce 56'] Length = 201 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 13/117 (11%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS-------------SDGCSSLML 101 VELS+ + I LN YR DKPT+VL+FP + +L Sbjct: 57 VELSVALVNDEAIHELNRSYRRKDKPTDVLAFPMLDQNGADSRRRGRRGPVDPSVWRGLL 116 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 GD++++ + +A + + + L+ HG LHLLGYDH D + M L R + Sbjct: 117 GDVIVSIDTAARQAAERDRPLLDEITMLLGHGLLHLLGYDHKTDAEEREMTDLTREL 173 >gi|406937|gb|AAD12531.1| unknown [Mycoplasma genitalium] Length = 113 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 2/94 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E +L+ +++ LN ++ T+V+S + L +G+I L + I +A Sbjct: 8 EFALLIVSCSKMKKLNKQFLKRRGCTDVISLCYNETETGFS--LAIGEIFLCPKYIFKKA 65 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 +G L +IHG LHL ++H + + Sbjct: 66 KEIGCNNWFLLTRCLIHGILHLFEFNHEESEAFE 99 >gi|307128532|ref|YP_003880562.1| hypothetical protein SMCARI_030 [Candidatus Sulcia muelleri CARI] gi|306482994|gb|ADM89864.1| conserved hypothetical protein [Candidatus Sulcia muelleri CARI] Length = 141 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 9/127 (7%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E++F+K + ++SK K+NI EL+ +F D + + +N +Y + T+V++F Sbjct: 15 EILFSKFIFFVVSKE---KKNIKELNFIFCDDNYLININKKYINKNNYTDVITFENYENK 71 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 + GDI L+ + I+ + K F N L ++IH LHL+GY + + +M Sbjct: 72 NL------YGDIFLSIKRIKYNSFKFKKLFFNELKRVMIHAVLHLIGYKDKNKFEKKIMY 125 Query: 153 GLERSIL 159 E + Sbjct: 126 KKENFYI 132 >gi|225012536|ref|ZP_03702972.1| protein of unknown function UPF0054 [Flavobacteria bacterium MS024-2A] gi|225003513|gb|EEG41487.1| protein of unknown function UPF0054 [Flavobacteria bacterium MS024-2A] Length = 123 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 6/105 (5%) Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 F + +N +Y T+++SF + S + ++ +E A + Sbjct: 20 FVSQEELLEMNQKYLNHTTHTDIISFNYSSKESL------RAEFFISLWAVERSAEEESQ 73 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 EN + +I+HG LH LG++ ++ M LE + ++ + Sbjct: 74 SVENECLRVIVHGILHCLGFNDASLQEKAKMRTLENNFIDMFHVK 118 >gi|84688108|ref|ZP_01015961.1| hypothetical protein 1099457000212_RB2654_05425 [Maritimibacter alkaliphilus HTCC2654] gi|84663878|gb|EAQ10389.1| hypothetical protein RB2654_05425 [Rhodobacterales bacterium HTCC2654] Length = 127 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 15/118 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ W + L L E A ++ L G E++L+ D RI L Sbjct: 1 MIVDVVYEDDRWV-ALGLEALAETACAATLAKLGIAG-------AEIALLACDDDRIAAL 52 Query: 71 NFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 N E+R PTNVLS+P+ + LGDI +AY+ EA GK Sbjct: 53 NTEFRDKPTPTNVLSWPSEERGADQPGGDPYPPEDMELGDIAIAYDTCAGEAAEAGKP 110 >gi|21672692|ref|NP_660759.1| hypothetical protein BUsg427 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|21623332|gb|AAM67970.1| hypothetical 17.5 kDa protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 105 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 42/102 (41%), Positives = 60/102 (58%), Gaps = 2/102 (1%) Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 ++ +N +YRG +K TN+LSF + +LGD+VL +IIE E+ K E+ Sbjct: 1 MKNINLKYRGKNKSTNILSFKFDL--FINKNQTLLGDLVLCKKIIEKESLKYQKTLESRW 58 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H+IIHG LHLLGYDH + K+ +ME +E I+ L PY Sbjct: 59 AHMIIHGTLHLLGYDHKNKKEKKIMEKIENKIMLFLNYEKPY 100 >gi|330893139|gb|EGH25800.1| metal-binding heat shock protein [Pseudomonas syringae pv. mori str. 301020] Length = 69 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 41/53 (77%) Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK ++H H++IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 1 GKSVDSHWAHMVIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYAED 53 >gi|42522997|ref|NP_968377.1| metal-dependent hydrolase, putative [Bdellovibrio bacteriovorus HD100] gi|59799115|sp|Q6MMY3|RRMF_BDEBA RecName: Full=Probable rRNA maturation factor gi|39575202|emb|CAE79370.1| metal-dependent hydrolase, putative [Bdellovibrio bacteriovorus HD100] Length = 150 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 13/154 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKEN-IVELSLVFTDSHRIET 69 +++ I E+ R + V+ L K E EL+LVF D + Sbjct: 1 MEVLIVNES----KHAAPRKFIQTWMQLVVTELKRKKVLKAEQARRELTLVFLDKKPAQK 56 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N E+RG + T+VLSF D LG++VL E+++ ++ G ++ L ++ Sbjct: 57 INMEFRGKNYATDVLSF-------DSMDPGSLGELVLCPEVLKRQSKEHGLTYQQELGYM 109 Query: 130 IIHGFLHLLGYDHVD-DKDACVMEGLERSILEDL 162 ++HG LHLLGYDH + +A M G++ + E L Sbjct: 110 LLHGVLHLLGYDHETSEAEALEMFGIQDAAFEVL 143 >gi|167737212|ref|ZP_02409986.1| hypothetical protein Bpse14_04051 [Burkholderia pseudomallei 14] Length = 39 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 1 HGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 39 >gi|300870905|ref|YP_003785776.1| hypothetical protein BP951000_1287 [Brachyspira pilosicoli 95/1000] gi|300688604|gb|ADK31275.1| unnamed protein product [Brachyspira pilosicoli 95/1000] Length = 153 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 14/126 (11%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 +S E++LVF++ I LN ++R DK T+VL+FP A+ G Sbjct: 22 FLSHAVKAANIDGEVNLVFSNDDYIRGLNKQFRNKDKATDVLTFPMGEANEG-------G 74 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-----DKDACVMEGLERS 157 DIV++YE + + + ++ LI+H LHL G H K+ M L + Sbjct: 75 DIVISYEWVLDRYSEDKI--KMTVIKLIVHSILHLQGIHHNYTEKSLKKNYKRMRELYKK 132 Query: 158 ILEDLG 163 ILE + Sbjct: 133 ILEHIK 138 >gi|301107293|ref|XP_002902729.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262098603|gb|EEY56655.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 136 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 11/97 (11%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG-------CSSLMLGDIVL 106 ++ ++ T ++ LN +R DKPT++LSFP + G LGDI + Sbjct: 40 PWDVGVMLTTDTHVQKLNRRFRKKDKPTDILSFPFHKVRAPGRFPRIRAREERYLGDIYI 99 Query: 107 AYEIIEIEAN----VLGKEFENHLVHLIIHGFLHLLG 139 + ++ + E L L+ HG HLLG Sbjct: 100 SPAYVQRQCEDPQLEEITTLEERLPVLMAHGLCHLLG 136 >gi|119629695|gb|EAX09290.1| chromosome 21 open reading frame 57, isoform CRA_c [Homo sapiens] Length = 122 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 F D LGDI L E I + +++ + L HG HLLG+ H + + Sbjct: 31 EFPQPDFPDDYNLGDIFLGVEYIFHQCKE-NEDYNDVLTVTATHGLCHLLGFTHGTEAEW 89 Query: 149 CVMEGLERSILEDLG 163 M E+++L++LG Sbjct: 90 QQMFQKEKAVLDELG 104 >gi|13508308|ref|NP_110258.1| metalloenzyme interacting with hemolysin [Mycoplasma pneumoniae M129] gi|1673944|gb|AAB95921.1| predicted metalloenzyme interacting with hemolysin [Mycoplasma pneumoniae M129] Length = 108 Score = 60.8 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 + +++ LN ++ T+V+S + +G+I L + I +A G Sbjct: 1 MIVSPWKMKRLNRQFLNRKGVTDVISICYNENEAGFSP--AIGEIFLCPKHIFKQAKQFG 58 Query: 120 KEFENHLVHLIIHGFLHLLGYDHV 143 L +IHG LHL +DH Sbjct: 59 CTPWFLLTRNLIHGLLHLFEFDHE 82 >gi|300774540|ref|ZP_07084403.1| possible metal dependent hydrolase [Chryseobacterium gleum ATCC 35910] gi|300506355|gb|EFK37490.1| possible metal dependent hydrolase [Chryseobacterium gleum ATCC 35910] Length = 139 Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 9/120 (7%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 +L + K + +LI + + E++ +F D + +N +Y D T+++ Sbjct: 6 YENLPESVSTDYKKWLEDLILSEG---KKLGEINYIFCDDEYLLKINQDYLQHDYYTDII 62 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 +F + +I ++ + I A+ L +++E L ++ HG LHL GY Sbjct: 63 TFDYVKGK------TISAEIFVSLQRISDNASTLSRDYEEELRRVLAHGILHLAGYKDKT 116 >gi|71654855|ref|XP_816039.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70881140|gb|EAN94188.1| hypothetical protein, conserved [Trypanosoma cruzi] gi|322822620|gb|EFZ28616.1| hypothetical protein TCSYLVIO_5140 [Trypanosoma cruzi] Length = 207 Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 36/147 (24%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM----------- 100 VELS+ F +++ LN E RGID+PT+VL+ + + S S + Sbjct: 36 PPSVELSIHFIRLSQMQLLNHERRGIDRPTDVLTVSGSGSGSPDASWVNGVLFPDKSHIV 95 Query: 101 ----------------------LGDIVLAYEIIEIEANVLGK---EFENHLVHLIIHGFL 135 LG+I ++ E + + F ++L + H L Sbjct: 96 CVSDGLRASEWAAPSRRDLLLDLGEIYVSVEEMWMRCLRYPHKNLPFHDYLQVALTHALL 155 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDL 162 H LGYDH + M E+ +L L Sbjct: 156 HALGYDHDTPERWKKMSRREKFMLHQL 182 >gi|221505230|gb|EEE30884.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 772 Score = 60.4 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 22/42 (52%) Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L IH LHLLG+DH ++ DA ME +E ++ Sbjct: 405 SVPERLPLLFIHAVLHLLGFDHEEEGDAREMEAVEEALFARF 446 >gi|299139982|ref|ZP_07033152.1| protein of unknown function UPF0054 [Acidobacterium sp. MP5ACTX8] gi|298597982|gb|EFI54150.1| protein of unknown function UPF0054 [Acidobacterium sp. MP5ACTX8] Length = 192 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 6/111 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ ++ +D + LN E+RG DK T+VLSFP + + GD+ ++ + +A Sbjct: 43 EVEVLLSDDRTLRRLNREFRGKDKATDVLSFP----APPELEGQLAGDLAISLDTALKQA 98 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 G + + L++HG LHL G DH D+ M E + L + + Sbjct: 99 QEQGHTLRDEVRVLLLHGLLHLYGMDHEVDE--GEMAAREAVLRTQLRLRN 147 >gi|320106115|ref|YP_004181705.1| hypothetical protein AciPR4_0878 [Terriglobus saanensis SP1PR4] gi|319924636|gb|ADV81711.1| protein of unknown function UPF0054 [Terriglobus saanensis SP1PR4] Length = 156 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 7/110 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 +++++ D R++ LN +R +K T+VLSFP S + GD+ ++ + E +A Sbjct: 35 DVTVLLADDARVKDLNRTFRKKNKATDVLSFPAGEGSDEI-----AGDLAISLDTAEKQA 89 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G + + L +HG LHL G DH + D M E + L + Sbjct: 90 ESFGHTLYDEVRVLTLHGLLHLAGLDH--EIDKGEMAAKELELRTKLELP 137 >gi|224372821|ref|YP_002607193.1| putative metalloprotease [Nautilia profundicola AmH] gi|254806612|sp|B9L985|RRMF_NAUPA RecName: Full=Probable rRNA maturation factor gi|223589812|gb|ACM93548.1| conserved hypothetical protein [Nautilia profundicola AmH] Length = 139 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 9/126 (7%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 ++ L + + +EL + TD I+ LN ++R DK T+VLSFP + Sbjct: 14 INKLNDIYNLLTDKDIEL--ILTDDEEIKELNSQFRNKDKATDVLSFPLE-----AMPGM 66 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 LG IV++ + + A G ++ + L +HG LHLLGYDH D M E I+ Sbjct: 67 PLGSIVISIDTAKKGAEEFGHSVDDEIRLLFLHGLLHLLGYDHETDN--GEMRAKEEEII 124 Query: 160 EDLGIN 165 + L + Sbjct: 125 KKLNLP 130 >gi|284931430|gb|ADC31368.1| putative metalloprotease ybeY [Mycoplasma gallisepticum str. F] Length = 164 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 3/133 (2%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + K ++ S + VK +++ L F + LN R Sbjct: 2 INHFDLKKVPPSIKEDFSEILKIINQCFSSHFKVKNDLLY-ELSFVSEKQSLQLNSSLRN 60 Query: 77 IDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 + +V+S + +LG+I + + I +A F L+ +IIHG LH Sbjct: 61 KEYVADVISVCLWENAEIITP--LLGEIFICSKKIAKDAIKYDVNFWYLLIRMIIHGLLH 118 Query: 137 LLGYDHVDDKDAC 149 LL +DH Sbjct: 119 LLEFDHEQSDAYE 131 >gi|294660422|ref|NP_853176.2| putative metalloprotease YbeY [Mycoplasma gallisepticum str. R(low)] gi|298286889|sp|Q7NB85|RRMF_MYCGA RecName: Full=Probable rRNA maturation factor gi|284812081|gb|AAP56744.2| putative metalloprotease ybeY [Mycoplasma gallisepticum str. R(low)] gi|284930658|gb|ADC30597.1| putative metalloprotease ybeY [Mycoplasma gallisepticum str. R(high)] Length = 164 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 3/133 (2%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + K ++ S + VK N+ L F + LN R Sbjct: 2 INHFDLKKVPPSIKEDFSEILKIINQCFSSHFKVKNNLFY-ELSFVSEKQSLQLNSSLRN 60 Query: 77 IDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 + +++S + +LG+I + + I +A F L+ +IIHG LH Sbjct: 61 KEYVADIISVCLWENAEIITP--LLGEIFICSKKIAKDAIKYDVNFWYLLIRMIIHGLLH 118 Query: 137 LLGYDHVDDKDAC 149 LL +DH Sbjct: 119 LLEFDHEQSDAYE 131 >gi|153812738|ref|ZP_01965406.1| hypothetical protein RUMOBE_03145 [Ruminococcus obeum ATCC 29174] gi|149831098|gb|EDM86187.1| hypothetical protein RUMOBE_03145 [Ruminococcus obeum ATCC 29174] Length = 133 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 53/140 (37%), Gaps = 22/140 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +QI E D I L V + + V ++LV TD+ I+ + Sbjct: 1 MTIQINYEAERKLD-IDYEKLASEVAEQILETENCPY------DVCVNLVITDNEEIKRV 53 Query: 71 NFEYRGIDKPTNVLSFPT---------------AFASSDGCSSLMLGDIVLAYEIIEIEA 115 N E+R I PT+VLSFP L+LGD++++ + + +A Sbjct: 54 NTEFRSIGAPTDVLSFPMIPFKTPADYSVIEGDDSYFDLDTDELILGDVMISVDKVYAQA 113 Query: 116 NVLGKEFENHLVHLIIHGFL 135 G E L H L Sbjct: 114 EEYGHSTEREFSFLFAHSML 133 >gi|256370607|ref|YP_003108432.1| hypothetical protein SMDSEM_028 [Candidatus Sulcia muelleri SMDSEM] gi|256009399|gb|ACU52759.1| conserved hypothetical protein [Candidatus Sulcia muelleri SMDSEM] Length = 134 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 48/102 (47%), Gaps = 6/102 (5%) Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANV 117 + +F + + +N ++ + T+VL+F + +++ G+I ++ I+ + Sbjct: 37 NYIFCEDKFLIKINKKFLKKNSYTDVLTFKYSEN------NIISGEIFISINRIKFNSLK 90 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 F + L +IIH LHL+GY+ + + +M E L Sbjct: 91 FKNSFYDELKRVIIHAGLHLIGYNDIKKYEKNLMSKKEDFYL 132 >gi|220904823|ref|YP_002480135.1| hypothetical protein Ddes_1556 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869122|gb|ACL49457.1| protein of unknown function UPF0054 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 156 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 11/100 (11%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + L D + N + G PTN+LSFP S G ++L+ + + E Sbjct: 51 VELYLLDDASVARANAGHLGCTGPTNILSFPGGSGSP--------GALLLSLDTLRRECL 102 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA---CVMEG 153 + G++ H V L+ HG HL G DH DA ME Sbjct: 103 LYGQDPAEHAVRLLAHGMGHLRGLDHGPVMDALCERHMEA 142 >gi|311695360|gb|ADP98233.1| predicted metal-dependent hydrolase [marine bacterium HP15] Length = 44 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 20/38 (52%), Positives = 27/38 (71%) Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 LHL G+DH++D+DA VME LE +L LG +PYE + Sbjct: 1 MLHLQGFDHIEDEDAEVMEALEVRLLAQLGFGNPYEAE 38 >gi|237836653|ref|XP_002367624.1| phosphopantethiene--protein transferase domain containing protein [Toxoplasma gondii ME49] gi|211965288|gb|EEB00484.1| phosphopantethiene--protein transferase domain containing protein [Toxoplasma gondii ME49] Length = 772 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 22/42 (52%) Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L IH LHLLG+DH ++ DA ME +E ++ Sbjct: 405 SVPERLPLLFIHAVLHLLGFDHEEEGDAREMEAVEAALFARF 446 >gi|320170652|gb|EFW47551.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 204 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 16/96 (16%) Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 ++ N ++ +G++ L +IE + FE Sbjct: 99 EEMKKCNLAWKSAYGDP----------------VRDIGELFLCPAVIERDCLKDQVTFEG 142 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 L L+ HG HLLG+DH + + M LE+ +L+ Sbjct: 143 RLPVLLAHGLCHLLGHDHDTMRTSAQMFQLEQQLLQ 178 >gi|94987342|ref|YP_595275.1| metal-dependent hydrolase [Lawsonia intracellularis PHE/MN1-00] gi|145558844|sp|Q1MPX3|RRMF_LAWIP RecName: Full=Probable rRNA maturation factor gi|94731591|emb|CAJ54954.1| predicted metal-dependent hydrolase [Lawsonia intracellularis PHE/MN1-00] Length = 133 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 7/123 (5%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + ++ F + I + + + + I N Y TNVLS Sbjct: 6 LGNEHIWKLPFCRLEFVAILEKMLSFAKLQTIEVYLVSDTTIAFFNLHYMNCLGITNVLS 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 FP G I+L+ + + E+ + + ++ + L+ HG H+ GY H + Sbjct: 66 FPMDDEDL-------AGSIILSVDAVCRESLLYRQPILDYCLSLLSHGIAHIAGYTHGVE 118 Query: 146 KDA 148 D Sbjct: 119 MDK 121 >gi|281357772|ref|ZP_06244258.1| protein of unknown function UPF0054 [Victivallis vadensis ATCC BAA-548] gi|281315719|gb|EFA99746.1| protein of unknown function UPF0054 [Victivallis vadensis ATCC BAA-548] Length = 165 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 2/129 (1%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 N+ W A+ + +L + F + N E+ G + Sbjct: 5 NSSWETR-RYPRPKRSELARLARRAAELAGLPADFDWDLDIRFVGDRTMAQANAEFVGHE 63 Query: 79 KPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL-GKEFENHLVHLIIHGFLHL 137 T+V++F ++++ + E + +V I+HG LH Sbjct: 64 GTTDVITFSYFDDPGSLFPGEAAVELLICLDAARREGEKRADSSYSREVVLYIVHGLLHS 123 Query: 138 LGYDHVDDK 146 G D + Sbjct: 124 AGEDDLSPA 132 >gi|224005883|ref|XP_002291902.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220972421|gb|EED90753.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 272 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 26/43 (60%) Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 E L LI+HG LHL+GYDH++D D +M E ++ +L Sbjct: 210 NPEIRLHMLIVHGMLHLVGYDHIEDDDYELMVVREDEVMAELK 252 Score = 34.2 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 D+ + + + + + ++SL D + +N E RG+D T+ Sbjct: 33 SDDRENPSSLPINLNALHRTIETTRDILGYPTYDVSLTLIDDDYMRDVNAETRGVDASTD 92 Query: 83 VLSFPTAFA 91 VLSF + Sbjct: 93 VLSFCFSDD 101 >gi|262341290|ref|YP_003284145.1| hypothetical protein BLBBGE_533 [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272627|gb|ACY40535.1| hypothetical protein BLBBGE_533 [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 132 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 9/118 (7%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 + E F + + L+ ++ VF + + + +N +Y + T+VLSF Sbjct: 10 DFQIENESFFIQEICLLLKNEGMYI---GNINYVFCNDNFLLDMNEKYLQKNLYTDVLSF 66 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 + + + GDI ++ + + + + + F L ++IH LH LGYD + Sbjct: 67 NYS------INQWICGDIFISVDRVLENSKLWNQSFLVELKRVMIHAVLHFLGYDDQN 118 >gi|221483947|gb|EEE22251.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 776 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 22/42 (52%) Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L IH LHLLG+DH ++ DA ME +E ++ Sbjct: 405 SVPERLPLLFIHAVLHLLGFDHEEEGDAREMEAVEAAVFARF 446 >gi|260655935|ref|ZP_05861404.1| putative metalloprotease [Jonquetella anthropi E3_33 E1] gi|260629551|gb|EEX47745.1| putative metalloprotease [Jonquetella anthropi E3_33 E1] Length = 171 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 5/115 (4%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS-----SDGCSSLMLGDIVLA 107 + +E+SL F D + LN +YRG ++PT+VLSFP L LGD+V Sbjct: 46 DELEISLQFLDEEAMAALNGQYRGENRPTDVLSFPLWENDGHLELPPSGGVLPLGDLVFC 105 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 ++E A G ++ L L+ HG LHL+ +DH ++ M ++ + + Sbjct: 106 RPVLEANAAAAGTSVQSELALLLAHGALHLIAWDHDTEERRAAMWAVQERYRQRI 160 >gi|229815232|ref|ZP_04445568.1| hypothetical protein COLINT_02278 [Collinsella intestinalis DSM 13280] gi|229809242|gb|EEP45008.1| hypothetical protein COLINT_02278 [Collinsella intestinalis DSM 13280] Length = 172 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 12/168 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D+ + + N D + L E +++++ E VE+SL + D + Sbjct: 1 MMDMSVLISNDANLDTL----LSEDEVCAIAAHVLAAEGV--ERDVEISLSYVDEDEMHD 54 Query: 70 LNFEYRGIDKPTNVLSFPTA---FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 LN ++R ID+ T+VLSF L LGDI+LA E+I +A G + + Sbjct: 55 LNRQWRDIDRTTDVLSFECDSAFDEDIPLDEVLELGDIILAPEVIARQAPGFGNDPTDEC 114 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI---NDPYEVD 171 +++HG LHLLGYDH++D +A ME E ++L +L + +DP +V+ Sbjct: 115 RLMLVHGLLHLLGYDHIEDDEAEEMEAREDALLRELAVQRGDDPSKVE 162 >gi|332256683|ref|XP_003277445.1| PREDICTED: LOW QUALITY PROTEIN: rRNA maturation factor homolog [Nomascus leucogenys] Length = 125 Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 36/111 (32%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 ++ ++ D+ I+ +N YR + PT+VLSFP Sbjct: 33 QKFDVGIICVDNENIQHINRIYRDRNVPTDVLSFPFHEXKKKKV---------------- 76 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 HG HLLG+ H + + E+++L++LG Sbjct: 77 ----------------TATHGLCHLLGFTHGSEAEWQQ----EKAVLDELG 107 >gi|257460682|ref|ZP_05625783.1| conserved hypothetical protein [Campylobacter gracilis RM3268] gi|257442013|gb|EEV17155.1| conserved hypothetical protein [Campylobacter gracilis RM3268] Length = 209 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 +LG +V+ +++E++A LG ++ L HG LH+LGYDH D M E Sbjct: 132 PALLGSVVINLDLVELKAAQLGHGRDDETALLFTHGLLHVLGYDHESDD--GQMRAKECE 189 Query: 158 ILEDLGIN 165 I+E + Sbjct: 190 IIEKFRLP 197 Score = 33.8 bits (76), Expect = 7.6, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 20/35 (57%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 + L+F + LN + RGIDK T+VLSFP Sbjct: 23 SVELIFVRGEEMRQLNAQTRGIDKATDVLSFPLDP 57 >gi|213027667|ref|ZP_03342114.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213161077|ref|ZP_03346787.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213583243|ref|ZP_03365069.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 85 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 11/96 (11%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A EN L E F + + +I + + E+++ D Sbjct: 1 MSQVILDLQLACEN-----HAGLPD--EAQFQRWLDGVIPQF----QEEAEVTIRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML 101 LN YRG DKPTNVLSFP + C + Sbjct: 50 ESHDLNLTYRGKDKPTNVLSFPFEAPPALKCRYWAI 85 >gi|225620349|ref|YP_002721606.1| putative metal-dependent hydrolase [Brachyspira hyodysenteriae WA1] gi|511147|emb|CAA51656.1| unnamed protein product [Brachyspira hyodysenteriae] gi|225215168|gb|ACN83902.1| putative metal-dependent hydrolase [Brachyspira hyodysenteriae WA1] Length = 141 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 14/115 (12%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 E++L+F D I+ LN ++R DK T+VL+FP + G + +V Y +I Sbjct: 32 DGEVNLLFCDDEYIKNLNRQFRNKDKATDVLTFPMGDINEGGDIVISYEWVVTRYSDEKI 91 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDD-----KDACVMEGLERSILEDLG 163 + ++ LIIH LHL G H ++ M+ L + +++ + Sbjct: 92 KKT---------VLKLIIHSILHLKGIHHNYTRKSLMENNKKMKELYKKVIKTIK 137 >gi|297597588|ref|NP_001044196.2| Os01g0739400 [Oryza sativa Japonica Group] gi|255673671|dbj|BAF06110.2| Os01g0739400 [Oryza sativa Japonica Group] Length = 251 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 + VE+S++ + + I+ LN E+RG D +LS + + LMLGDIV++ E Sbjct: 169 DKVEVSVLLCNDNFIQNLNKEWRGEDSCIEMLSM-SQYIPDLDVPILMLGDIVISVETAA 227 Query: 113 IEANVLGKEFENHLVHLII 131 +A G + + L + Sbjct: 228 RQAEERGHTLLDEVRILAV 246 >gi|50842421|ref|YP_055648.1| putative metalloprotease [Propionibacterium acnes KPA171202] gi|282854119|ref|ZP_06263456.1| metalloprotein, YbeY/ UPF0054family [Propionibacterium acnes J139] gi|59799026|sp|Q6A976|RRMF_PROAC RecName: Full=Probable rRNA maturation factor gi|50840023|gb|AAT82690.1| conserved protein [Propionibacterium acnes KPA171202] gi|282583572|gb|EFB88952.1| metalloprotein, YbeY/ UPF0054family [Propionibacterium acnes J139] gi|314923094|gb|EFS86925.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL001PA1] gi|314966863|gb|EFT10962.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL082PA2] gi|314981205|gb|EFT25299.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL110PA3] gi|315091776|gb|EFT63752.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL110PA4] gi|315093216|gb|EFT65192.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL060PA1] gi|315103280|gb|EFT75256.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL050PA2] gi|315105485|gb|EFT77461.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL030PA1] Length = 155 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 14/117 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I E+ +E L L + ELS++ D +E + Sbjct: 2 IDITNESGSPSNEEGLVGLATFALDR----------LRIHPSSELSIILVDEETMEAYHE 51 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLM----LGDIVLAYEIIEIEANVLGKEFENH 125 ++ G+ PT+VLSFP + G LGDIVL + +A G+ + Sbjct: 52 KFMGLPGPTDVLSFPMDEMRAPGDDEDPPSGLLGDIVLCPTVTARQAAENGRTPDGE 108 >gi|296126703|ref|YP_003633955.1| hypothetical protein Bmur_1670 [Brachyspira murdochii DSM 12563] gi|296018519|gb|ADG71756.1| protein of unknown function UPF0054 [Brachyspira murdochii DSM 12563] Length = 145 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 22/146 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E + K + V E +++L+F D I+ L Sbjct: 1 MKVNVFNETDY------------DINIKYYKYFLYNSLIVSEVKGDVNLLFCDDEYIKKL 48 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N ++R +K T+VL+FP GDIV++YE ++ + + ++ LI Sbjct: 49 NNDFRNKNKATDVLTFPMGDDDEG-------GDIVISYEWVKNRYSEDKI--KKTVLKLI 99 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLER 156 IH LHL G H + +ME E+ Sbjct: 100 IHSILHLKGI-HHNYSKKSLMENNEK 124 >gi|255550974|ref|XP_002516535.1| Phosphatase yidA, putative [Ricinus communis] gi|223544355|gb|EEF45876.1| Phosphatase yidA, putative [Ricinus communis] Length = 595 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 16/155 (10%) Query: 4 KKVNLPRLDLQIAVENALWGDE--IHLRTLCEVVFAKAVSNLISKGYFVKEN-------- 53 K N ++D+ I +E+ L D + + L + A+ Sbjct: 109 TKENELQIDVSICIEDDLPDDPEILSISELLRLNVPMAMKLAFDGLKDSNYKTRDTAISD 168 Query: 54 -----IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAY 108 VELS++ + I LN ++R D T+VLS + LMLGDIV++ Sbjct: 169 IGGFQSVELSVLLCNDDFIRKLNKDWRDEDHATDVLSM-SQHVPGLKLPVLMLGDIVISV 227 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 E +A G + + L++HG LHLLG+DH Sbjct: 228 ETAARQAEERGLSLIDEIRILLVHGLLHLLGFDHE 262 >gi|289425171|ref|ZP_06426948.1| metalloprotein, YbeY family [Propionibacterium acnes SK187] gi|289427200|ref|ZP_06428916.1| metalloprotein, YbeY family [Propionibacterium acnes J165] gi|295130497|ref|YP_003581160.1| metalloprotein, YbeY family [Propionibacterium acnes SK137] gi|289154149|gb|EFD02837.1| metalloprotein, YbeY family [Propionibacterium acnes SK187] gi|289159669|gb|EFD07857.1| metalloprotein, YbeY family [Propionibacterium acnes J165] gi|291376558|gb|ADE00413.1| metalloprotein, YbeY family [Propionibacterium acnes SK137] gi|313764557|gb|EFS35921.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL013PA1] gi|313772405|gb|EFS38371.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL074PA1] gi|313801806|gb|EFS43040.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL110PA2] gi|313807415|gb|EFS45902.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL087PA2] gi|313809923|gb|EFS47644.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL083PA1] gi|313816098|gb|EFS53812.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL059PA1] gi|313818461|gb|EFS56175.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL046PA2] gi|313820224|gb|EFS57938.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL036PA1] gi|313822967|gb|EFS60681.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL036PA2] gi|313825105|gb|EFS62819.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL063PA1] gi|313827673|gb|EFS65387.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL063PA2] gi|313830254|gb|EFS67968.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL007PA1] gi|313834055|gb|EFS71769.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL056PA1] gi|313838632|gb|EFS76346.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL086PA1] gi|314915553|gb|EFS79384.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL005PA4] gi|314918493|gb|EFS82324.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL050PA1] gi|314919980|gb|EFS83811.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL050PA3] gi|314925452|gb|EFS89283.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL036PA3] gi|314931993|gb|EFS95824.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL067PA1] gi|314955862|gb|EFT00262.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL027PA1] gi|314958343|gb|EFT02446.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL002PA1] gi|314960102|gb|EFT04204.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL002PA2] gi|314962904|gb|EFT07004.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL082PA1] gi|314968019|gb|EFT12118.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL037PA1] gi|314973260|gb|EFT17356.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL053PA1] gi|314975935|gb|EFT20030.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL045PA1] gi|314978308|gb|EFT22402.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL072PA2] gi|314984047|gb|EFT28139.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL005PA1] gi|314987810|gb|EFT31901.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL005PA2] gi|314990031|gb|EFT34122.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL005PA3] gi|315080748|gb|EFT52724.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL078PA1] gi|315084418|gb|EFT56394.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL027PA2] gi|315085758|gb|EFT57734.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL002PA3] gi|315088824|gb|EFT60800.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL072PA1] gi|315096172|gb|EFT68148.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL038PA1] gi|315098434|gb|EFT70410.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL059PA2] gi|315101209|gb|EFT73185.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL046PA1] gi|315108431|gb|EFT80407.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL030PA2] gi|327326089|gb|EGE67879.1| putative metalloprotease [Propionibacterium acnes HL096PA2] gi|327332040|gb|EGE73777.1| putative metalloprotease [Propionibacterium acnes HL096PA3] gi|327443243|gb|EGE89897.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL013PA2] gi|327446029|gb|EGE92683.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL043PA2] gi|327447993|gb|EGE94647.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL043PA1] gi|327450883|gb|EGE97537.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL087PA3] gi|327453768|gb|EGF00423.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL083PA2] gi|328753570|gb|EGF67186.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL020PA1] gi|328754303|gb|EGF67919.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL087PA1] gi|328754445|gb|EGF68061.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL025PA2] gi|328760410|gb|EGF73978.1| putative metalloprotease [Propionibacterium acnes HL099PA1] gi|332675333|gb|AEE72149.1| putative metal-dependent hydrolase [Propionibacterium acnes 266] Length = 155 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 14/117 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I E+ +E L L + ELS++ D +E + Sbjct: 2 IDITNESGSPSNEEGLVGLATFALD----------WLRIHPSSELSIILVDEETMEAYHE 51 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLM----LGDIVLAYEIIEIEANVLGKEFENH 125 ++ G+ PT+VLSFP + G LGDIVL + +A G+ + Sbjct: 52 KFMGLPGPTDVLSFPMDEMRAPGDDEDPPSGLLGDIVLCPTVTARQAAENGRTPDGE 108 >gi|313792245|gb|EFS40346.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL110PA1] gi|315078119|gb|EFT50170.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL053PA2] gi|327453040|gb|EGE99694.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL092PA1] Length = 155 Score = 54.3 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 14/117 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I E+ +E L L + ELS++ D +E + Sbjct: 2 IDITNESGSPSNEEGLVGLATFALD----------WLRIHPSSELSIILVDEETMEAYHE 51 Query: 73 EYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 ++ G+ PT+VLSFP + S +LGDIVL + +A G+ + Sbjct: 52 KFMGLPGPTDVLSFPMDEMRVPGDDEDPPSGLLGDIVLCPTVTARQAAENGRTPDGE 108 >gi|76799813|ref|ZP_00781874.1| Hypothetical UPF0054 protein gbs1562/SAG1501 [Streptococcus agalactiae 18RS21] gi|76584831|gb|EAO61528.1| Hypothetical UPF0054 protein gbs1562/SAG1501 [Streptococcus agalactiae 18RS21] Length = 42 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 22/40 (55%) Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 1 MGFLAVHGFLHINGYDHYTPEEEKEMFSLQEEILTAYGLK 40 >gi|311695359|gb|ADP98232.1| metalloprotease YbeY [marine bacterium HP15] Length = 115 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 18/123 (14%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D Q E E ++ ++ + E+ E+++ + + L Sbjct: 1 MDFQQVFEAPGIPSETQVQKWAQLAWQ-------------GEDPSEVTVRIVGTEESQAL 47 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YRG D PTNVLSFP + G + + GD+V+ ++E EA K+ L Sbjct: 48 NHQYRGRDYPTNVLSFPFE--APAGITVPLAGDLVICAPVVEKEAMEQEKKPGRPLG--- 102 Query: 131 IHG 133 HG Sbjct: 103 AHG 105 >gi|327327688|gb|EGE69464.1| putative metalloprotease [Propionibacterium acnes HL103PA1] Length = 155 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 14/113 (12%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I E+ +E L L + ELS++ D +E + Sbjct: 2 IDITNESGSPSNEEGLVGLATFALDR----------LRIHPSSELSIILVDEETMEAYHE 51 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLM----LGDIVLAYEIIEIEANVLGKE 121 ++ G+ PT+VLSFP + G LGDIVL + +A G+ Sbjct: 52 KFMGLPGPTDVLSFPMDEMRAPGDDEDPPSGLLGDIVLCPTVTARQAAENGRT 104 >gi|269836920|ref|YP_003319148.1| hypothetical protein Sthe_0889 [Sphaerobacter thermophilus DSM 20745] gi|269786183|gb|ACZ38326.1| protein of unknown function UPF0054 [Sphaerobacter thermophilus DSM 20745] Length = 153 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 62/150 (41%), Gaps = 3/150 (2%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 E+ E+ + + + +++ + + + I L+ + I Sbjct: 3 EHGGLSVELTISPGAPSLDQGRLRAVLAFAARHEGLSGTVGVWICTDAEIADLHLRFMNI 62 Query: 78 DKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 PT+VL+FP ++DG LGDI ++++ +A G + + +L +HG LHL Sbjct: 63 PDPTDVLTFPADITNTDG---PYLGDIAVSFDTAADQAADAGHSPQREIAYLALHGLLHL 119 Query: 138 LGYDHVDDKDACVMEGLERSILEDLGINDP 167 GYD + + M + ++ +P Sbjct: 120 AGYDDLTPDERDTMLRRQDELIAAFEREEP 149 >gi|325971266|ref|YP_004247457.1| metalloprotease ybeY [Spirochaeta sp. Buddy] gi|324026504|gb|ADY13263.1| metalloprotease ybeY [Spirochaeta sp. Buddy] Length = 182 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 72/184 (39%), Gaps = 31/184 (16%) Query: 1 MSVKKVNLPRL---------DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVK 51 M+++K RL + ++ E + E+ + + L + Sbjct: 1 MNIQKNKNQRLGENRGLETYYIDVSYEIESYVQEVDQ--------QRVIDRLEEVLVLLG 52 Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------------ 99 + E S+ F ++ LN YR D+PT++LSF D Sbjct: 53 QGSCEFSVSFVSDAAMQELNKTYRDKDEPTDILSFVQEDDVEDFSWPEVVFEETESLPQE 112 Query: 100 --MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 +LGD+V++ + ++ A E + L L+IHG LHLLG DH + M + Sbjct: 113 IRVLGDMVISLDTLKRNALSFSVEPDEELHRLLIHGLLHLLGEDHHTNDADEPMLVKQEQ 172 Query: 158 ILED 161 +L+ Sbjct: 173 LLQQ 176 >gi|330444255|ref|YP_004377241.1| hypothetical protein G5S_0564 [Chlamydophila pecorum E58] gi|328807365|gb|AEB41538.1| conserved hypothetical protein [Chlamydophila pecorum E58] Length = 157 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 41/110 (37%), Gaps = 3/110 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI-- 113 ++ + F + + L+ + T+ ++ P +LG+ ++ + + Sbjct: 41 QVFVYFLEDKALAQLHDQVFSDPSLTDTITLPID-PPGASSYPHVLGEAFISPKAAQRFL 99 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 L ++ + ++H LH+L Y+ + M E +L L Sbjct: 100 RCEDLSEQVYEEVSRYLVHSLLHMLNYEDTTPEKKRKMRVKENLLLCILK 149 >gi|213029864|ref|ZP_03344311.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 43 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/37 (54%), Positives = 25/37 (67%) Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 LHLLGYDH+DD +A ME LE I+ +G DPY + Sbjct: 3 LHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPYIAE 39 >gi|302342384|ref|YP_003806913.1| hypothetical protein Deba_0949 [Desulfarculus baarsii DSM 2075] gi|301638997|gb|ADK84319.1| protein of unknown function UPF0054 [Desulfarculus baarsii DSM 2075] Length = 140 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 35/71 (49%) Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANV 117 SL+ D I +N +Y PTNVL+F G + +LGD+V++ + + EA Sbjct: 21 SLLICDDVEIAQINGQYLDRRGPTNVLAFAMQEGDGAGVNPQILGDVVVSIDTAQREAAE 80 Query: 118 LGKEFENHLVH 128 G + + H V Sbjct: 81 NGLDPDEHFVR 91 >gi|182414335|ref|YP_001819401.1| hypothetical protein Oter_2519 [Opitutus terrae PB90-1] gi|177841549|gb|ACB75801.1| protein of unknown function UPF0054 [Opitutus terrae PB90-1] Length = 177 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 13/101 (12%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 ELSLVF + L+ + T+V++F S + + +I Sbjct: 45 EGELSLVFLTDVALAQLHASFLDDPTITDVITFEGN-PSLGTAGEVCVSADAALRQIGID 103 Query: 114 EAN------------VLGKEFENHLVHLIIHGFLHLLGYDH 142 A + F + ++HG+LHL GYD Sbjct: 104 PARGTKSRAARRLSVAQQRLFSAEVTLYLVHGWLHLAGYDD 144 >gi|320102827|ref|YP_004178418.1| hypothetical protein Isop_1283 [Isosphaera pallida ATCC 43644] gi|319750109|gb|ADV61869.1| protein of unknown function UPF0054 [Isosphaera pallida ATCC 43644] Length = 191 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 1/108 (0%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEIIEIEA 115 +++ D + + LN D PT+V++ A A D S + ++ ++ E +A Sbjct: 67 VTIYLVDDRQSQALNRRLLQHDWPTDVITSVIAQAEPDAPRSQPIEAELFISTETAARQA 126 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 + + ++HG LHLLG+D ++ DA M E +L G Sbjct: 127 AEHHATAWDEVGRYLVHGLLHLLGHDDANEFDAQRMRQEETRMLRAAG 174 >gi|297568434|ref|YP_003689778.1| pyridoxal phosphate biosynthetic protein PdxJ [Desulfurivibrio alkaliphilus AHT2] gi|296924349|gb|ADH85159.1| pyridoxal phosphate biosynthetic protein PdxJ [Desulfurivibrio alkaliphilus AHT2] Length = 398 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 2/110 (1%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--S 93 A+ + + ELSL+ D +++ N +R ++PTNVL+F A Sbjct: 17 LARLKKQAAILLHLTGQPRSELSLLLVDDRQMQEFNHLFRQRNRPTNVLAFAQREAPEIP 76 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 G MLGD+V++ + EA G + L L+ HG LHLLGYDH Sbjct: 77 GGLGDEMLGDVVISLDTARREARAAGVSPGHRLAWLLTHGLLHLLGYDHE 126 >gi|307110839|gb|EFN59074.1| hypothetical protein CHLNCDRAFT_13914 [Chlorella variabilis] Length = 109 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 7/100 (7%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-------DGCSSLMLGDIVL 106 +ELSLV D + LN E+RG+D PT+VLSF +LGD+V+ Sbjct: 10 PLELSLVLCDDAHMRGLNAEWRGVDAPTDVLSFELEDDDDEDAEGGAPELPINVLGDVVI 69 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 + + +A G+ + L++HG LHLLGYDH + + Sbjct: 70 SLDTAARQAAERGQSLLDESRVLLVHGVLHLLGYDHEESE 109 >gi|119629698|gb|EAX09293.1| chromosome 21 open reading frame 57, isoform CRA_e [Homo sapiens] Length = 79 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 20/33 (60%) Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 HG HLLG+ H + + M E+++L++LG Sbjct: 29 THGLCHLLGFTHGTEAEWQQMFQKEKAVLDELG 61 >gi|313837274|gb|EFS74988.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL037PA2] gi|314928051|gb|EFS91882.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL044PA1] gi|314972045|gb|EFT16143.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL037PA3] gi|328907175|gb|EGG26941.1| metalloprotein, YbeY family [Propionibacterium sp. P08] Length = 155 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 14/117 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I E+ DE L L + ELS++ D +E + Sbjct: 2 IDITNESGSPADEEGLVGLATFALD----------WLRIHPSSELSIILIDEQTMEAYHE 51 Query: 73 EYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 ++ G+ PT+VLSFP + S +LGDIVL + +A G+ + Sbjct: 52 KFMGLPGPTDVLSFPMDEMRAPVDREDPPSGLLGDIVLCPTVTARQAAENGRTPDGE 108 >gi|326488921|dbj|BAJ98072.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 590 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI 110 K VE+S++ + + I+ LN E+RG D T++LS + F +LMLGDIV++ E Sbjct: 164 KYEKVEVSVLVCNDNFIQNLNKEWRGEDCATDMLSV-SQFIPDLDVPTLMLGDIVISVET 222 Query: 111 IEIEANVLGKEFENHL 126 +A G + L Sbjct: 223 AARQAEARGHTLLDEL 238 >gi|242279255|ref|YP_002991384.1| hypothetical protein Desal_1783 [Desulfovibrio salexigens DSM 2638] gi|242122149|gb|ACS79845.1| protein of unknown function UPF0054 [Desulfovibrio salexigens DSM 2638] Length = 151 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 8/132 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + +++E + L + L+ + L + I + Sbjct: 1 MGVNLSIECSS----DANFPLAKRELLHMADMLLEVLGL---EGFDFDLKIVNDAAIAEV 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+ G PTNVLSFP + + D + LG+IVL+ + + E + G++ E H V L+ Sbjct: 54 NEEFLGCVGPTNVLSFPFSE-TPDLEKNSFLGEIVLSVDTLARETRLYGQQPEEHTVRLL 112 Query: 131 IHGFLHLLGYDH 142 H LHL GYDH Sbjct: 113 AHALLHLAGYDH 124 >gi|154336667|ref|XP_001564569.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134061604|emb|CAM38635.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 212 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 51/175 (29%) Query: 35 VFAKAVSNLISKGYFVKENIVE--LSLVFTDSHRIETLNFEYRGIDKPTNVLSF------ 86 + V +LI+ ++ + L+L F + +N +Y+ D+PT+VL+F Sbjct: 14 TLRREVRHLINLLLTLEHAPYDTRLNLEFVSLAYMRQINCKYKESDRPTDVLTFTSVGKA 73 Query: 87 -----------PTAFASSDGC-----------------------------SSLMLGDIVL 106 P D + LGDI + Sbjct: 74 DRFVNHLLFSDPLEGGDDDEGTHAALATSRECGVAVAAGPTVLKKSAIRAELVDLGDIFV 133 Query: 107 AYEIIEIEANVL---GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 + + + + +L ++H LH LGYDH + + M E+ + Sbjct: 134 SLDYMRLRCRRYPSTTLPLAPYLHAALVHATLHALGYDHKNPELLQHMARREQQL 188 >gi|237756142|ref|ZP_04584714.1| putative metalloprotease [Sulfurihydrogenibium yellowstonense SS-5] gi|237691706|gb|EEP60742.1| putative metalloprotease [Sulfurihydrogenibium yellowstonense SS-5] Length = 111 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 E++ + + + ++S+ N VE+S+ TD+ RI +N E+RG DKPT+V Sbjct: 14 KEVYSKEITKKFLKDITEKILSELNL---NNVEISITLTDNERIRKINKEWRGKDKPTDV 70 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 LSFP G +LGD++++ + +A +G + Sbjct: 71 LSFPQDET--IGYKYRLLGDVIISLPYAKAQAEEIGFTLKEEF 111 >gi|322502702|emb|CBZ37785.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 213 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 48/151 (31%), Gaps = 49/151 (32%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS------------------ 98 LSL F + LN +Y+G D+PT+VL+F A + + Sbjct: 39 LSLEFVSLAHMRQLNCKYKGSDRPTDVLTFTPAGEADSFVNDLLFGDFLERGDGDTGTGA 98 Query: 99 ----------------------------LMLGDIVLAYEIIE---IEANVLGKEFENHLV 127 + LG I ++ + + +L Sbjct: 99 TLTTSPTCAGAVGAEPNALTQSIIRAELIDLGSIFVSLDYMRLRCRRFPSTTLPLAPYLH 158 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 ++H LH LGYDH + M E+ + Sbjct: 159 AALVHATLHALGYDHKNPALLQQMVRREQQL 189 >gi|94264469|ref|ZP_01288257.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93455100|gb|EAT05324.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 440 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 3/77 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP---TAFASSDGCSSLMLGDIVLAYEII 111 ELS++ D R+ LN YRG D+PTNVL+FP ++ G +LGDIV+A + Sbjct: 78 AELSILLVDEQRMGQLNAHYRGQDRPTNVLAFPQADHDREAAGGAGPRLLGDIVIAPAVA 137 Query: 112 EIEANVLGKEFENHLVH 128 EA LG + L Sbjct: 138 AREARELGISRQRRLDW 154 >gi|94271344|ref|ZP_01291941.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93450472|gb|EAT01646.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 440 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 3/77 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP---TAFASSDGCSSLMLGDIVLAYEII 111 ELS++ D R+ LN YRG D+PTNVL+FP ++ +LGDIV+A + Sbjct: 78 AELSILLVDEQRMGQLNAHYRGQDRPTNVLAFPQADHDREAAGEAGPRLLGDIVIAPAVA 137 Query: 112 EIEANVLGKEFENHLVH 128 EA LG + L Sbjct: 138 AREARELGISRQRRLDW 154 >gi|146099524|ref|XP_001468666.1| hypothetical protein [Leishmania infantum] gi|134073034|emb|CAM71753.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 213 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 49/151 (32%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS------------------ 98 L+L F + LN +Y+G D+PT+VL+F A + + Sbjct: 39 LNLEFVSLAHMRQLNCKYKGSDRPTDVLTFTPAGEADSFVNDLLFGDFLERGDGDTGTGA 98 Query: 99 ----------------------------LMLGDIVLAYEIIE---IEANVLGKEFENHLV 127 + LG I ++ + + +L Sbjct: 99 TLTTSPTCAGAVGAEPNALTQSIIRAELIDLGSIFVSLDYMRLRCRRFPSTTLPLAPYLH 158 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 ++H LH LGYDH + M E+ + Sbjct: 159 AALVHATLHALGYDHKNPALLQQMVRREQQL 189 >gi|257063748|ref|YP_003143420.1| conserved hypothetical protein TIGR00043 [Slackia heliotrinireducens DSM 20476] gi|256791401|gb|ACV22071.1| conserved hypothetical protein TIGR00043 [Slackia heliotrinireducens DSM 20476] Length = 163 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 61/150 (40%), Gaps = 26/150 (17%) Query: 13 LQIAVE---NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + I V+ ++ + L E V + E+S+ F D I+ Sbjct: 1 MNIIVDVLHGEDLVSQVDVERLAEYVLTQ----------EGCPENTEVSITFVDDEEIQR 50 Query: 70 LNFEYRGIDKPTNVLSF-------------PTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 LN EYRGIDKPT+VLSF A +LGDI++A ++ + Sbjct: 51 LNLEYRGIDKPTDVLSFECDGYDDEFDDGDAYEDAGVPDDEPFLLGDIIIATDVANAQTA 110 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 L L++HG LHL G+DHV Sbjct: 111 QFHTTPSEELHVLLVHGLLHLNGWDHVHSD 140 >gi|269215613|ref|ZP_06159467.1| cupin domain protein [Slackia exigua ATCC 700122] gi|269131100|gb|EEZ62175.1| cupin domain protein [Slackia exigua ATCC 700122] Length = 185 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 13/108 (12%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-------------DGCSS 98 E S+ F I LN E+RGID+PT+VLSF + Sbjct: 55 PERTEASIAFVSDDEIRRLNAEFRGIDRPTDVLSFECDGMDDAFDEGDVFEGSGMPDEET 114 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 +LGD+++A ++ + G + L L++HG LHL G+DHV Sbjct: 115 FLLGDVIIATDVARAQTERFGTTPQEELCVLLVHGLLHLCGWDHVHSD 162 >gi|119629699|gb|EAX09294.1| chromosome 21 open reading frame 57, isoform CRA_f [Homo sapiens] Length = 144 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 31/118 (26%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSFP D LGDI Sbjct: 33 QKFDLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHEHLKAGEFPQPDFPDDYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 L E I + D D M E+++L++LG Sbjct: 93 LGVEYIFHQCKEN------------------------EDYNDVLTMFQKEKAVLDELG 126 >gi|328480085|gb|EGF49072.1| metalloprotease [Lactobacillus rhamnosus MTCC 5462] Length = 35 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/33 (51%), Positives = 22/33 (66%) Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 HGFLHL GYDH+ +D VM L++ IL G+ Sbjct: 1 HGFLHLNGYDHIKPEDEAVMIPLQKKILTAYGL 33 >gi|169840971|ref|ZP_02874084.1| Hypothetical Metal-Binding Protein [candidate division TM7 single-cell isolate TM7a] Length = 34 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 19/32 (59%) Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G LHLLGYDH++++D VM E IL Sbjct: 1 GMLHLLGYDHIEEEDKAVMRRREEEILSKFNY 32 >gi|157876147|ref|XP_001686434.1| hypothetical protein [Leishmania major strain Friedlin] gi|68129508|emb|CAJ08051.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 213 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 49/151 (32%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL----------------- 99 L+L F + LN++Y+G+D+PT+VL+F A + + L Sbjct: 39 LNLEFVSLAHMRQLNYKYKGLDRPTDVLTFAPAGEADSFVNDLLFGDFLERGDGDKGTGA 98 Query: 100 -----------------------------MLGDIVLAYEIIEIEANVL---GKEFENHLV 127 LG+I ++ + + + +L Sbjct: 99 TLTASPTCAAAVGAGPNALTQSIIRGELVDLGNIFVSLDYMRLRCRRYPSTTLPLAPYLH 158 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 ++H LH LGYDH M E+ + Sbjct: 159 AALVHATLHALGYDHTSRALLQQMARREQQL 189 >gi|297626086|ref|YP_003687849.1| hypothetical protein PFREUD_08850 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921851|emb|CBL56411.1| Hypothetical protein PFREUD_08850 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 152 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 14/118 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + ++ E++ D L L K +LS++ D + + Sbjct: 2 IDLSNESSEEVDTQALIRLARFALDK----------LRIHPQADLSILLVDVDTMTAYHK 51 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLM----LGDIVLAYEIIEIEANVLGKEFENHL 126 ++ +D PT+V+SFP LGDIV+ +A G+ + + Sbjct: 52 QFMNLDGPTDVMSFPMDELREPADGEAPPRGLLGDIVICPAFTSAQAPGNGRTNQEEI 109 >gi|3089170|gb|AAC14874.1| hypothetical protein [Chlorobaculum tepidum] Length = 44 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 20/42 (47%) Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 FE+ L+ + IH LHL+GYD + M E L L Sbjct: 1 SFEDELLRVTIHSALHLMGYDDETSELRAAMSLREDHYLYRL 42 >gi|322495135|emb|CBZ30439.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 213 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 47/151 (31%), Gaps = 49/151 (32%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA------------------------- 91 L+L F + LN++Y+G D+ T+VL+F Sbjct: 39 LNLEFVSLAHMRQLNYKYKGSDRATDVLTFTPVGKAGSFVNDLLFSDFLERGDGNKDTGA 98 Query: 92 ---------------------SSDGCSSLMLGDIVLAYEIIEIEANVL---GKEFENHLV 127 S L LG+I ++ + + + +L Sbjct: 99 TLTTSPTCAGAVGAEPNALTQSIIRAELLDLGNIFVSLDYMRLRCRRYPSTTLPLAPYLH 158 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 ++H LH LGYDH M E+ + Sbjct: 159 AALVHATLHALGYDHTSPALLQQMVRREQQL 189 >gi|213581737|ref|ZP_03363563.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 39 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/34 (50%), Positives = 22/34 (64%) Query: 138 LGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 LGYDH+DD +A ME LE I+ +G DPY + Sbjct: 2 LGYDHIDDDEAEEMESLETEIMLAMGYEDPYIAE 35 >gi|328955428|ref|YP_004372761.1| protein of unknown function UPF0054 [Coriobacterium glomerans PW2] gi|328455752|gb|AEB06946.1| protein of unknown function UPF0054 [Coriobacterium glomerans PW2] Length = 187 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 8/81 (9%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--------SDGCSSLMLGDIV 105 VELS+ F + + LN +RGID+PT+VLSF L LGD++ Sbjct: 38 PVELSVSFVGASEMRDLNRSWRGIDEPTDVLSFECDRPDSKDSLAGRPGCEQPLELGDVI 97 Query: 106 LAYEIIEIEANVLGKEFENHL 126 LA EII +A + Sbjct: 98 LAPEIIAAQATGFKNTAADEC 118 >gi|323698302|ref|ZP_08110214.1| protein of unknown function UPF0054 [Desulfovibrio sp. ND132] gi|323458234|gb|EGB14099.1| protein of unknown function UPF0054 [Desulfovibrio desulfuricans ND132] Length = 164 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 11/95 (11%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS-----------SDGCSSLMLGDIVLA 107 L D I LN E+ G PTN+LSFP LG++ L+ Sbjct: 46 LKLVDDREIARLNREFLGCTGPTNILSFPARDGDGTDALADGEVGDPEDDGEFLGELALS 105 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 + + E ++ G+ HL L+ HG LHL G+DH Sbjct: 106 VDALARETDLYGQLPLEHLARLLAHGLLHLAGFDH 140 >gi|58700115|ref|ZP_00374639.1| metal-binding protein [Wolbachia endosymbiont of Drosophila ananassae] gi|58533369|gb|EAL57844.1| metal-binding protein [Wolbachia endosymbiont of Drosophila ananassae] Length = 35 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/31 (54%), Positives = 20/31 (64%) Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LHLLGYDH + +M+ LER IL LG N Sbjct: 1 LHLLGYDHQKKDEEIIMKNLEREILASLGYN 31 >gi|213416841|ref|ZP_03349985.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 65 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 11/76 (14%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A EN L E F + + +I + + E+++ D Sbjct: 1 MSQVILDLQLACEN-----HAGLPD--EAQFQRWLDGVIPQF----QEEAEVTIRLVDEA 49 Query: 66 RIETLNFEYRGIDKPT 81 LN YRG DKPT Sbjct: 50 ESHDLNLTYRGKDKPT 65 >gi|307069660|ref|YP_003878137.1| hypothetical protein ZICARI_187 [Candidatus Zinderia insecticola CARI] gi|306482920|gb|ADM89791.1| hypothetical protein ZICARI_187 [Candidatus Zinderia insecticola CARI] Length = 139 Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 46/98 (46%), Gaps = 5/98 (5%) Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +I+ +NF ++ TN+L+F + ++ +I + +I++ E + +N+ Sbjct: 43 KIKKINFTFKKKKNVTNILTF-----KNIYNKIIIDSNIYICLKILKKECKNKNIKLKNY 97 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 ++I+HG LH + H + K+ M+ E + Sbjct: 98 FFYIIMHGILHSYNFKHNNFKNYKEMKKKEIYFKNKIK 135 >gi|207109371|ref|ZP_03243533.1| putative metalloprotease [Helicobacter pylori HPKX_438_CA4C1] Length = 99 Score = 42.3 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 11/108 (10%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F L+ K V + LV I +N + RG D T+VL Sbjct: 3 EIDNQTPLESDFL-----LLEKIANVLAPTQTIELVLVSGETIREINRDLRGCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 SFP LG +V+ + + A LG E + L IH Sbjct: 58 SFPLEAIP-----HTPLGSVVINAPLAQTNALKLGHRLEEEIA-LFIH 99 >gi|74001574|ref|XP_855646.1| PREDICTED: similar to UPF0054 protein C21orf57 isoform 2 [Canis familiaris] Length = 73 Score = 42.3 bits (98), Expect = 0.025, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 23/38 (60%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 +L L+ D+ ++ LN YRG D+PT+VLSFP Sbjct: 34 DFDLGLLCVDNEGMQRLNRAYRGDDRPTDVLSFPFHEE 71 >gi|54607074|ref|NP_001006114.1| rRNA maturation factor homolog isoform 2 [Homo sapiens] gi|55824657|gb|AAH22828.2| Chromosome 21 open reading frame 57 [Homo sapiens] gi|110645888|gb|AAI19771.1| Chromosome 21 open reading frame 57 [Homo sapiens] gi|114108258|gb|AAI22866.1| Chromosome 21 open reading frame 57 [Homo sapiens] gi|119629694|gb|EAX09289.1| chromosome 21 open reading frame 57, isoform CRA_b [Homo sapiens] gi|124297721|gb|AAI31554.1| Chromosome 21 open reading frame 57 [Homo sapiens] gi|221040460|dbj|BAH11937.1| unnamed protein product [Homo sapiens] Length = 121 Score = 41.9 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 7/73 (9%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSFP D LGDI Sbjct: 33 QKFDLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHEHLKAGEFPQPDFPDDYNLGDIF 92 Query: 106 LAYEIIEIEANVL 118 L E I + Sbjct: 93 LGVEYIFHQCKEN 105 >gi|332872342|ref|XP_003319178.1| PREDICTED: rRNA maturation factor homolog isoform 3 [Pan troglodytes] gi|332872344|ref|XP_003319179.1| PREDICTED: rRNA maturation factor homolog isoform 4 [Pan troglodytes] Length = 121 Score = 41.9 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 7/73 (9%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSFP D LGDI Sbjct: 33 QKFDLGIICVDNKNIQHINRVYRDRNVPTDVLSFPFHEHLKAGEFPQPDFPDDYNLGDIF 92 Query: 106 LAYEIIEIEANVL 118 L E I + Sbjct: 93 LGVEYIFHQCKEN 105 >gi|308809559|ref|XP_003082089.1| unnamed protein product [Ostreococcus tauri] gi|116060556|emb|CAL55892.1| unnamed protein product [Ostreococcus tauri] Length = 470 Score = 41.9 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 9/112 (8%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++L L +Q+ E+A L + + KA + + + +ELS+ Sbjct: 40 LDLNELRVQVE-EDARAVMTKLLTSRGDSAGGKAARGALPRSV----SHMELSVALCSDE 94 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANV 117 I +LN YR D T+VLSFP +LGD+V++ + +A Sbjct: 95 YIRSLNAGYRQKDSATDVLSFPAES----FGPMAVLGDVVVSVDTAATQARE 142 >gi|207108397|ref|ZP_03242559.1| putative metalloprotease [Helicobacter pylori HPKX_438_CA4C1] Length = 42 Score = 40.8 bits (94), Expect = 0.072, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 HG LHLLGYDH +KD E +++ + Sbjct: 2 HGVLHLLGYDH--EKDKGEQRQKESELIKAFNLP 33 >gi|213422920|ref|ZP_03355946.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 36 Score = 40.8 bits (94), Expect = 0.075, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 20/32 (62%) Query: 140 YDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 YDH+DD +A ME LE I+ +G DPY + Sbjct: 1 YDHIDDDEAEEMESLETEIMLAMGYEDPYIAE 32 >gi|325116812|emb|CBZ52365.1| phosphopantethiene--protein transferase domain containing protein [Neospora caninum Liverpool] Length = 593 Score = 40.4 bits (93), Expect = 0.092, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 20/70 (28%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 V+ + G + L L L +H L Sbjct: 180 SCRFSAGVIQAAIDADRREVEKLADDGSQFFCQGSGIKDLLKLRLSVPERLPLLFMHASL 239 Query: 136 HLLGYDHVDD 145 HLLG+DH +D Sbjct: 240 HLLGFDHEED 249 >gi|153813757|ref|ZP_01966425.1| hypothetical protein RUMOBE_04191 [Ruminococcus obeum ATCC 29174] gi|149830144|gb|EDM85238.1| hypothetical protein RUMOBE_04191 [Ruminococcus obeum ATCC 29174] Length = 30 Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 14/27 (51%), Positives = 19/27 (70%) Query: 138 LGYDHVDDKDACVMEGLERSILEDLGI 164 LGYDH++ +A VME + LE+LGI Sbjct: 2 LGYDHMEPDEAAVMETKQAKALENLGI 28 >gi|237755517|ref|ZP_04584138.1| putative metalloprotease [Sulfurihydrogenibium yellowstonense SS-5] gi|237692341|gb|EEP61328.1| putative metalloprotease [Sulfurihydrogenibium yellowstonense SS-5] Length = 37 Score = 38.1 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Query: 134 FLHLLGYDHVD-DKDACVMEGLERSILEDL 162 LHLLGYDH ++DA +M L+ I + L Sbjct: 1 ILHLLGYDHETNEEDAKIMFELQDKIFDKL 30 >gi|159479148|ref|XP_001697660.1| hypothetical protein CHLREDRAFT_176526 [Chlamydomonas reinhardtii] gi|158274270|gb|EDP00054.1| predicted protein [Chlamydomonas reinhardtii] Length = 296 Score = 38.1 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 1/67 (1%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E V + ++G+ + LSLV D I LN +RG D T+VL Sbjct: 78 EADTAAALRRVLERKGQQKAAEGWKMPRVAC-LSLVLCDDAHIRHLNSLHRGKDAATDVL 136 Query: 85 SFPTAFA 91 SF Sbjct: 137 SFELGDE 143 >gi|46203302|ref|ZP_00208894.1| hypothetical protein Magn03005964 [Magnetospirillum magnetotacticum MS-1] Length = 59 Score = 38.1 bits (87), Expect = 0.46, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 3/57 (5%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 ++ IAVE+ W I E +AV + VE+S++ D ++ Sbjct: 5 EIDIAVEDGRWEAAIP---DLEGFVLRAVEAGLDILPDSAGGPVEVSVLLADDATVQ 58 >gi|313245221|emb|CBY40015.1| unnamed protein product [Oikopleura dioica] Length = 309 Score = 37.3 bits (85), Expect = 0.72, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 23/75 (30%), Gaps = 2/75 (2%) Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E K V F F + + LG H L Sbjct: 140 NKETNFCIKIEEVDQFDKQFDERIRIIDGNGCWSYIGMTGDNPQDISLGT--LCHTRGLA 197 Query: 131 IHGFLHLLGYDHVDD 145 +H FLH LG+DH + Sbjct: 198 LHEFLHALGFDHEQN 212 >gi|313216931|emb|CBY38139.1| unnamed protein product [Oikopleura dioica] Length = 451 Score = 37.3 bits (85), Expect = 0.78, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 23/75 (30%), Gaps = 2/75 (2%) Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E K V F F + + LG H L Sbjct: 140 NKETNFCIKIEEVDQFDKQFDERIRIIDGNGCWSYIGMTGDNPQDISLGT--LCHTRGLA 197 Query: 131 IHGFLHLLGYDHVDD 145 +H FLH LG+DH + Sbjct: 198 LHEFLHALGFDHEQN 212 >gi|313239934|emb|CBY14773.1| unnamed protein product [Oikopleura dioica] Length = 346 Score = 36.9 bits (84), Expect = 0.89, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 23/75 (30%), Gaps = 2/75 (2%) Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E K V F F + + LG H L Sbjct: 140 NKETNFCIKIEEVDQFDKQFDERIRIIDGNGCWSYIGMTGDNPQDISLGT--LCHTRGLA 197 Query: 131 IHGFLHLLGYDHVDD 145 +H FLH LG+DH + Sbjct: 198 LHEFLHALGFDHEQN 212 >gi|22760760|dbj|BAC11323.1| unnamed protein product [Homo sapiens] Length = 502 Score = 36.5 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 + S + S+ + ++ +YE + G+ E L +L HG L Sbjct: 374 NMPSCPQAYSELQMLSPSERQCVETVVNMCYSYECVLRAMKKKGENIEQILDYLFAHGQL 433 Query: 136 HLLGYDHVDDKDACVMEGL-ERSILEDLGI 164 G+D + ++A M E ++E L + Sbjct: 434 CEKGFDPLLVEEALEMHQCSEEKMMEFLQL 463 >gi|78356694|ref|YP_388143.1| hypothetical protein Dde_1651 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123552550|sp|Q311E8|RRMF_DESDG RecName: Full=Probable rRNA maturation factor gi|78219099|gb|ABB38448.1| Protein of unknown function UPF0054 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 169 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 17/103 (16%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-----------------FASSDGCSSL 99 + ++ TD LN E+ G PTN+LSFP A SS Sbjct: 39 VEVILTDDGESAQLNREFLGCYGPTNILSFPAAGPVAAPRQEPDSPPACRKDSSHAEDDT 98 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 LG + L+ + E+ + G+ H + L+ HG LHL GYDH Sbjct: 99 DLGVLALSTGAVHRESFLYGQPPHRHALRLLAHGLLHLAGYDH 141 >gi|297684184|ref|XP_002819733.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin-associated protein 1-like [Pongo abelii] Length = 549 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 + S + S+ + ++ +YE + G+ E L +L HG L Sbjct: 421 NMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGESIEQILDYLFAHGQL 480 Query: 136 HLLGYDHVDDKDACVMEGL-ERSILEDLGI 164 G+D + ++A M E ++E L + Sbjct: 481 CEKGFDPLLVEEALEMHQCSEEKMMEFLQL 510 >gi|283945558|ref|NP_001164672.1| ubiquitin-associated protein 1 isoform 2 [Homo sapiens] Length = 566 Score = 35.8 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 + S + S+ + ++ +YE + G+ E L +L HG L Sbjct: 438 NMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQL 497 Query: 136 HLLGYDHVDDKDACVMEGL-ERSILEDLGI 164 G+D + ++A M E ++E L + Sbjct: 498 CEKGFDPLLVEEALEMHQCSEEKMMEFLQL 527 >gi|221044696|dbj|BAH14025.1| unnamed protein product [Homo sapiens] Length = 566 Score = 35.8 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 + S + S+ + ++ +YE + G+ E L +L HG L Sbjct: 438 NMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQL 497 Query: 136 HLLGYDHVDDKDACVMEGL-ERSILEDLGI 164 G+D + ++A M E ++E L + Sbjct: 498 CEKGFDPLLVEEALEMHQCSEEKMMEFLQL 527 >gi|289807196|ref|ZP_06537825.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 50 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 4/44 (9%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 E F + + +I + + E+++ D LN YRG Sbjct: 10 EAQFQRWLDGVIPQF----QEEAEVTIRLVDEAESHDLNLTYRG 49 >gi|149736926|ref|XP_001499640.1| PREDICTED: similar to Ubiquitin-associated protein 1 (UBAP) (Nasopharyngeal carcinoma-associated gene 20 protein) [Equus caballus] Length = 506 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 1/90 (1%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 S + S+ + ++ +YE + G+ E L +L HG L Sbjct: 378 NTTTCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQL 437 Query: 136 HLLGYDHVDDKDACVMEGL-ERSILEDLGI 164 G+D + ++A M E ++E L + Sbjct: 438 CEKGFDPILVEEALEMHQCSEEKMMEFLQL 467 >gi|221053774|ref|XP_002258261.1| holo-(acyl-carrier protein) synthase [Plasmodium knowlesi strain H] gi|193808094|emb|CAQ38798.1| holo-(acyl-carrier protein) synthase, putative [Plasmodium knowlesi strain H] Length = 628 Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 59/199 (29%), Gaps = 71/199 (35%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF------- 86 F K + LI F +L++ F ++++ LN +R ++PT+++S Sbjct: 221 ANFEKEIRKLIRLMRF---EDFQLNITFVSLNQMKELNKTHRRKNEPTDIISLLHYVDNG 277 Query: 87 -------PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF----------------- 122 + G L GDI L I E + + Sbjct: 278 QGVSGNSELQGSDIPGGRCLRSGDIYLCPAYISRECVLARVNYERSLLNDQSSESGKVEK 337 Query: 123 -----------------------------------ENHLVHLIIHGFLHLLGYDHVDDKD 147 + L ++HG +HL DHV++ D Sbjct: 338 IGGVSTLDNREDEDRNWEQVRPRGVNKLFRTLFCVQERLALYVLHGLIHLTNKDHVNNAD 397 Query: 148 ACV--MEGLERSILEDLGI 164 M+ E I + L Sbjct: 398 EYNAFMDIEEDMISKYLKF 416 >gi|283945560|ref|NP_001164673.1| ubiquitin-associated protein 1 isoform 3 [Homo sapiens] Length = 538 Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 + S + S+ + ++ +YE + G+ E L +L HG L Sbjct: 410 NMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQL 469 Query: 136 HLLGYDHVDDKDACVMEGL-ERSILEDLGI 164 G+D + ++A M E ++E L + Sbjct: 470 CEKGFDPLLVEEALEMHQCSEEKMMEFLQL 499 >gi|332831760|ref|XP_001155943.2| PREDICTED: ubiquitin-associated protein 1 isoform 1 [Pan troglodytes] gi|332831762|ref|XP_003312096.1| PREDICTED: ubiquitin-associated protein 1 isoform 2 [Pan troglodytes] gi|332831764|ref|XP_003312097.1| PREDICTED: ubiquitin-associated protein 1 isoform 3 [Pan troglodytes] gi|332831766|ref|XP_003312098.1| PREDICTED: ubiquitin-associated protein 1 isoform 4 [Pan troglodytes] Length = 502 Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 + S + S+ + ++ +YE + G+ E L +L HG L Sbjct: 374 NMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAIKKKGENIEQILDYLFAHGQL 433 Query: 136 HLLGYDHVDDKDACVMEGL-ERSILEDLGI 164 G+D + ++A M E ++E L + Sbjct: 434 CEKGFDPLLVEEALEMHQCSEEKMMEFLQL 463 >gi|221040914|dbj|BAH12084.1| unnamed protein product [Homo sapiens] Length = 450 Score = 34.6 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 1/90 (1%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 + S + S+ M+ ++ +YE + G+ E L +L HG L Sbjct: 322 NMPSCPQAYSELQMLSPSERQCVEMVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQL 381 Query: 136 HLLGYDHVDDKDACVMEGL-ERSILEDLGI 164 G+D + ++A M E ++E L + Sbjct: 382 CEKGFDPLLVEEALEMHQCSEEKMMEFLQL 411 >gi|124505535|ref|XP_001351509.1| holo-(acyl-carrier protein) synthase, putative [Plasmodium falciparum 3D7] gi|23498267|emb|CAD49239.1| holo-(acyl-carrier protein) synthase, putative [Plasmodium falciparum 3D7] Length = 594 Score = 34.6 bits (78), Expect = 4.6, Method: Composition-based stats. Identities = 8/92 (8%), Positives = 30/92 (32%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 + + + ++ + + L++ F ++ +N ++R D T+V+S Sbjct: 189 NNQVNIPIDLSRFEKEVRKLIEILNYKNFHLNITFVSLEEMKRINKKHRNKDMATDVISI 248 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 + + + + ++ Sbjct: 249 LHYLDDPNYDYNYDFLKNAIGGKKGFKSGDIY 280 >gi|332831768|ref|XP_003312099.1| PREDICTED: ubiquitin-associated protein 1 isoform 5 [Pan troglodytes] Length = 450 Score = 34.6 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 + S + S+ + ++ +YE + G+ E L +L HG L Sbjct: 322 NMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAIKKKGENIEQILDYLFAHGQL 381 Query: 136 HLLGYDHVDDKDACVMEGL-ERSILEDLGI 164 G+D + ++A M E ++E L + Sbjct: 382 CEKGFDPLLVEEALEMHQCSEEKMMEFLQL 411 >gi|62898031|dbj|BAD96955.1| ubiquitin associated protein variant [Homo sapiens] Length = 502 Score = 34.6 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 + S + S+ + ++ +YE + G+ E L +L HG L Sbjct: 374 NMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQL 433 Query: 136 HLLGYDHVDDKDACVMEGL-ERSILEDLGI 164 G+D + ++A M E ++E L + Sbjct: 434 CEKGFDPLLVEEALEMHQCSEEKMMEFLQL 463 >gi|49065528|emb|CAG38582.1| UBAP1 [Homo sapiens] Length = 502 Score = 34.6 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 + S + S+ + ++ +YE + G+ E L +L HG L Sbjct: 374 NMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQL 433 Query: 136 HLLGYDHVDDKDACVMEGL-ERSILEDLGI 164 G+D + ++A M E ++E L + Sbjct: 434 CEKGFDPLLVEEALEMHQCSEEKMMEFLQL 463 >gi|8394499|ref|NP_057609.2| ubiquitin-associated protein 1 isoform 1 [Homo sapiens] gi|283945562|ref|NP_001164674.1| ubiquitin-associated protein 1 isoform 1 [Homo sapiens] gi|283945566|ref|NP_001164675.1| ubiquitin-associated protein 1 isoform 1 [Homo sapiens] gi|67475018|sp|Q9NZ09|UBAP1_HUMAN RecName: Full=Ubiquitin-associated protein 1; Short=UBAP-1; AltName: Full=Nasopharyngeal carcinoma-associated gene 20 protein gi|7948993|gb|AAF37827.2| ubiquitin-associated protein [Homo sapiens] gi|12052985|emb|CAB66667.1| hypothetical protein [Homo sapiens] gi|18088061|gb|AAH20950.1| Ubiquitin associated protein 1 [Homo sapiens] gi|22760502|dbj|BAC11224.1| unnamed protein product [Homo sapiens] gi|22760805|dbj|BAC11342.1| unnamed protein product [Homo sapiens] gi|55958635|emb|CAI15914.1| ubiquitin associated protein 1 [Homo sapiens] gi|66990049|gb|AAH98141.1| Ubiquitin associated protein 1 [Homo sapiens] gi|68144549|gb|AAH98316.1| Ubiquitin associated protein 1 [Homo sapiens] gi|71043483|gb|AAH99726.1| Ubiquitin associated protein 1 [Homo sapiens] gi|71680401|gb|AAI00669.1| Ubiquitin associated protein 1 [Homo sapiens] gi|117646546|emb|CAL38740.1| hypothetical protein [synthetic construct] gi|119578871|gb|EAW58467.1| ubiquitin associated protein 1, isoform CRA_a [Homo sapiens] gi|119578872|gb|EAW58468.1| ubiquitin associated protein 1, isoform CRA_a [Homo sapiens] gi|119578873|gb|EAW58469.1| ubiquitin associated protein 1, isoform CRA_a [Homo sapiens] gi|119578874|gb|EAW58470.1| ubiquitin associated protein 1, isoform CRA_a [Homo sapiens] gi|123981574|gb|ABM82616.1| ubiquitin associated protein 1 [synthetic construct] gi|123996395|gb|ABM85799.1| ubiquitin associated protein 1 [synthetic construct] gi|208965656|dbj|BAG72842.1| ubiquitin associated protein 1 [synthetic construct] Length = 502 Score = 34.6 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 + S + S+ + ++ +YE + G+ E L +L HG L Sbjct: 374 NMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQL 433 Query: 136 HLLGYDHVDDKDACVMEGL-ERSILEDLGI 164 G+D + ++A M E ++E L + Sbjct: 434 CEKGFDPLLVEEALEMHQCSEEKMMEFLQL 463 >gi|332228556|ref|XP_003263455.1| PREDICTED: ubiquitin-associated protein 1 isoform 1 [Nomascus leucogenys] gi|332228558|ref|XP_003263456.1| PREDICTED: ubiquitin-associated protein 1 isoform 2 [Nomascus leucogenys] gi|332228560|ref|XP_003263457.1| PREDICTED: ubiquitin-associated protein 1 isoform 3 [Nomascus leucogenys] gi|332228562|ref|XP_003263458.1| PREDICTED: ubiquitin-associated protein 1 isoform 4 [Nomascus leucogenys] Length = 502 Score = 34.6 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 + S + S+ + ++ +YE + G+ E L +L HG L Sbjct: 374 NMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQL 433 Query: 136 HLLGYDHVDDKDACVMEGL-ERSILEDLGI 164 G+D + ++A M E ++E L + Sbjct: 434 CEKGFDPLLVEEALEMHQCSEEKMMEFLQL 463 >gi|22760387|dbj|BAC11176.1| unnamed protein product [Homo sapiens] Length = 502 Score = 34.6 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 + S + S+ + ++ +YE + G+ E L +L HG L Sbjct: 374 NMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQL 433 Query: 136 HLLGYDHVDDKDACVMEGL-ERSILEDLGI 164 G+D + ++A M E ++E L + Sbjct: 434 CEKGFDPLLVEEALEMHQCSEEKMMEFLQL 463 >gi|166365283|ref|YP_001657556.1| hypothetical protein MAE_25420 [Microcystis aeruginosa NIES-843] gi|166087656|dbj|BAG02364.1| conserved hypothetical protein [Microcystis aeruginosa NIES-843] Length = 307 Score = 34.6 bits (78), Expect = 5.1, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 16/126 (12%) Query: 5 KVNLPRLDL--QIAVENALWGDEIH---------LRTLCEVVFAKAVSNLISKGYFVKEN 53 K P++++ IA E+ W EI + E +A +++ E Sbjct: 43 KSIYPKIEIIPYIATESGDWQKEISGCDAVINLAGEPISERWTGEAKRAIVASREIGTEK 102 Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 IVE ++ D +N G + SF D L D+ +E Sbjct: 103 IVE-AIALADQKPKVLINSSAIGYYGTSETASFDENSPPGDD----FLADVCKKWETAAQ 157 Query: 114 EANVLG 119 + G Sbjct: 158 KVKDYG 163 >gi|332704408|ref|ZP_08424496.1| Phenylacetate--CoA ligase [Desulfovibrio africanus str. Walvis Bay] gi|332554557|gb|EGJ51601.1| Phenylacetate--CoA ligase [Desulfovibrio africanus str. Walvis Bay] Length = 433 Score = 34.6 bits (78), Expect = 5.1, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 14/35 (40%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI 44 L++ + V L+ DEI E K + + Sbjct: 369 MLEINVEVNEKLFSDEIKNLQRLEAKIQKNIKEFL 403 >gi|297270738|ref|XP_002800100.1| PREDICTED: ubiquitin-associated protein 1 isoform 2 [Macaca mulatta] gi|297270740|ref|XP_002800101.1| PREDICTED: ubiquitin-associated protein 1 isoform 3 [Macaca mulatta] gi|297270742|ref|XP_002800102.1| PREDICTED: ubiquitin-associated protein 1 isoform 4 [Macaca mulatta] gi|297270744|ref|XP_002800103.1| PREDICTED: ubiquitin-associated protein 1 isoform 5 [Macaca mulatta] gi|297270746|ref|XP_001089450.2| PREDICTED: ubiquitin-associated protein 1 isoform 1 [Macaca mulatta] Length = 502 Score = 34.6 bits (78), Expect = 5.2, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 + S + S+ + ++ +YE + G+ E L +L HG L Sbjct: 374 NMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQL 433 Query: 136 HLLGYDHVDDKDACVMEGL-ERSILEDLGI 164 G+D + ++A M E ++E L + Sbjct: 434 CEKGFDPLLVEEALEMHQCSEEKMMEFLQL 463 >gi|156085890|ref|XP_001610354.1| hypothetical protein [Babesia bovis T2Bo] gi|154797607|gb|EDO06786.1| membrane protein, putative [Babesia bovis] Length = 217 Score = 34.6 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 11/121 (9%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS-----------FPTAFASSDGCSSLML 101 ++ ++F D+ + N + G T+++S + + L Sbjct: 88 PDFQVDVIFLDTKEMTECNSNHFGKHHATDIISLAENSLYTKDKYNLNRSPQLVADFRNL 147 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 G+I + + I + + + + YDHV+D D M E +L+ Sbjct: 148 GEINMCPDYIYKQMIGDQEYSNQGVCQIKADKHCDENAYDHVEDNDFEEMLLQEDRLLDV 207 Query: 162 L 162 Sbjct: 208 F 208 >gi|156098161|ref|XP_001615113.1| holo-(acyl-carrier protein) synthase [Plasmodium vivax SaI-1] gi|148803987|gb|EDL45386.1| holo-(acyl-carrier protein) synthase, putative [Plasmodium vivax] Length = 511 Score = 34.6 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 30/61 (49%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 ++ +T + A + + ++ +L++ F ++ +N +RG ++PT+V+S Sbjct: 45 VNNQTEVPIDLAHFEKEVRKLIHLMRFEDFQLNITFVSLKEMKEVNRTHRGKNEPTDVIS 104 Query: 86 F 86 Sbjct: 105 L 105 >gi|22760352|dbj|BAC11162.1| unnamed protein product [Homo sapiens] Length = 401 Score = 34.2 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 + S + S+ + ++ +YE + G+ E L +L HG L Sbjct: 273 NMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQL 332 Query: 136 HLLGYDHVDDKDACVMEGL-ERSILEDLGI 164 G+D + ++A M E ++E L + Sbjct: 333 CEKGFDPLLVEEALEMHQCSEEKMMEFLQL 362 >gi|281348614|gb|EFB24198.1| hypothetical protein PANDA_019425 [Ailuropoda melanoleuca] Length = 496 Score = 34.2 bits (77), Expect = 6.1, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 1/90 (1%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 S + S+ + ++ +YE + G+ E L +L HG L Sbjct: 368 NTPSCPQAYSELQTLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQL 427 Query: 136 HLLGYDHVDDKDACVMEGL-ERSILEDLGI 164 G+D + ++A M E ++E L + Sbjct: 428 CEKGFDPLLVEEALEMHQCSEEKMMEFLQL 457 >gi|332228564|ref|XP_003263459.1| PREDICTED: ubiquitin-associated protein 1 isoform 5 [Nomascus leucogenys] Length = 450 Score = 34.2 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 + S + S+ + ++ +YE + G+ E L +L HG L Sbjct: 322 NMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQL 381 Query: 136 HLLGYDHVDDKDACVMEGL-ERSILEDLGI 164 G+D + ++A M E ++E L + Sbjct: 382 CEKGFDPLLVEEALEMHQCSEEKMMEFLQL 411 >gi|296190145|ref|XP_002743070.1| PREDICTED: ubiquitin-associated protein 1 isoform 1 [Callithrix jacchus] gi|296190151|ref|XP_002743071.1| PREDICTED: ubiquitin-associated protein 1 isoform 2 [Callithrix jacchus] gi|296190153|ref|XP_002743072.1| PREDICTED: ubiquitin-associated protein 1 isoform 3 [Callithrix jacchus] gi|296190155|ref|XP_002743073.1| PREDICTED: ubiquitin-associated protein 1 isoform 4 [Callithrix jacchus] Length = 502 Score = 34.2 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 + S + S+ + ++ +YE + G+ E L +L HG L Sbjct: 374 NMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQL 433 Query: 136 HLLGYDHVDDKDACVMEGL-ERSILEDLGI 164 G+D + ++A M E ++E L + Sbjct: 434 CEKGFDPLLVEEALEMHQCSEEKMMEFLQL 463 >gi|301787739|ref|XP_002929285.1| PREDICTED: ubiquitin-associated protein 1-like [Ailuropoda melanoleuca] Length = 507 Score = 34.2 bits (77), Expect = 6.8, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 1/90 (1%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 S + S+ + ++ +YE + G+ E L +L HG L Sbjct: 379 NTPSCPQAYSELQTLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQL 438 Query: 136 HLLGYDHVDDKDACVMEGL-ERSILEDLGI 164 G+D + ++A M E ++E L + Sbjct: 439 CEKGFDPLLVEEALEMHQCSEEKMMEFLQL 468 >gi|154152097|ref|NP_001093846.1| ubiquitin-associated protein 1 [Bos taurus] gi|151557117|gb|AAI50087.1| UBAP1 protein [Bos taurus] gi|296484520|gb|DAA26635.1| ubiquitin associated protein 1 [Bos taurus] Length = 502 Score = 33.8 bits (76), Expect = 7.6, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 1/90 (1%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 S A + S+ + ++ +YE + G+ E L +L HG L Sbjct: 374 NTPSCPQAHSELQALSPSERHCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQL 433 Query: 136 HLLGYDHVDDKDACVMEGL-ERSILEDLGI 164 G+D + ++A M+ E ++E L + Sbjct: 434 CEKGFDPLLVEEALEMQQCSEEKMMEFLQL 463 >gi|73971154|ref|XP_531976.2| PREDICTED: similar to Ubiquitin-associated protein 1 isoform 1 [Canis familiaris] Length = 405 Score = 33.8 bits (76), Expect = 7.7, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 1/90 (1%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 S + S+ + ++ +YE + G+ E L +L HG L Sbjct: 277 NAPSCPQAYSELQTLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQL 336 Query: 136 HLLGYDHVDDKDACVMEGL-ERSILEDLGI 164 G+D + ++A M E ++E L + Sbjct: 337 CEKGFDPLLVEEALEMHQCSEEKMMEFLQL 366 >gi|73971148|ref|XP_852433.1| PREDICTED: similar to Ubiquitin-associated protein 1 isoform 2 [Canis familiaris] Length = 506 Score = 33.8 bits (76), Expect = 9.0, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 1/90 (1%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 S + S+ + ++ +YE + G+ E L +L HG L Sbjct: 378 NAPSCPQAYSELQTLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQL 437 Query: 136 HLLGYDHVDDKDACVMEGL-ERSILEDLGI 164 G+D + ++A M E ++E L + Sbjct: 438 CEKGFDPLLVEEALEMHQCSEEKMMEFLQL 467 >gi|167463345|ref|ZP_02328434.1| hypothetical protein Plarl_12411 [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384838|ref|ZP_08058499.1| metal-dependent phosphohydrolase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150307|gb|EFX43809.1| metal-dependent phosphohydrolase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 331 Score = 33.8 bits (76), Expect = 9.1, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 14/64 (21%) Query: 120 KEFENHLVHLIIHGFLH-------------LLGYDHVDDKDACVMEGLERSILEDLGIND 166 K F L + LH LGYDH + + ++ +L+ G++ Sbjct: 74 KTFFPEWRELHVAAILHDIGHLPFSHAVERALGYDHHQNTEQAILSPQVALVLKKYGLS- 132 Query: 167 PYEV 170 PY++ Sbjct: 133 PYKI 136 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.316 0.138 0.423 Lambda K H 0.267 0.0421 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,682,865,199 Number of Sequences: 14124377 Number of extensions: 61840207 Number of successful extensions: 251133 Number of sequences better than 10.0: 2335 Number of HSP's better than 10.0 without gapping: 2191 Number of HSP's successfully gapped in prelim test: 144 Number of HSP's that attempted gapping in prelim test: 246307 Number of HSP's gapped (non-prelim): 2441 length of query: 171 length of database: 4,842,793,630 effective HSP length: 129 effective length of query: 42 effective length of database: 3,020,748,997 effective search space: 126871457874 effective search space used: 126871457874 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 76 (33.8 bits)