RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780427|ref|YP_003064840.1| hypothetical protein
CLIBASIA_01560 [Candidatus Liberibacter asiaticus str. psy62]
         (171 letters)



>gnl|CDD|145339 pfam02130, UPF0054, Uncharacterized protein family UPF0054. 
          Length = 141

 Score =  136 bits (345), Expect = 3e-33
 Identities = 55/110 (50%), Positives = 66/110 (60%), Gaps = 1/110 (0%)

Query: 55  VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-LGDIVLAYEIIEI 113
            ELS++F D   I  LN EYRG DKPT+VLSFP           L+ LGDIV++ E    
Sbjct: 32  FELSILFVDDEEIRELNREYRGKDKPTDVLSFPMDEPEEGDEPLLLLLGDIVISPETAAR 91

Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163
           EA   G   E  L HL++HG LHLLGYDH +D++A  ME LE  IL  LG
Sbjct: 92  EAKEYGHSLERELAHLLVHGLLHLLGYDHEEDEEAEEMEALEEEILAKLG 141


>gnl|CDD|30667 COG0319, COG0319, Predicted metal-dependent hydrolase [General
           function prediction only].
          Length = 153

 Score =  130 bits (328), Expect = 2e-31
 Identities = 63/158 (39%), Positives = 82/158 (51%), Gaps = 8/158 (5%)

Query: 11  LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70
           L + I V +         R      F + ++  +      K +  ELS+V  D   I  L
Sbjct: 1   LMMDIEVSDEDGQV----RLPELKQFEEWLAAALKPE---KISTAELSVVLVDDAEIREL 53

Query: 71  NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130
           N EYRG DKPT+VLSFP      +     +LGDIV+  E+ E +A   G   E  L HL 
Sbjct: 54  NLEYRGKDKPTDVLSFP-YNEPGEAGEPPLLGDIVICPEVAEEQAKEQGHSLERELAHLT 112

Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168
           IHG LHLLGYDH +D++   ME LE  IL  LG++DPY
Sbjct: 113 IHGILHLLGYDHEEDEEEEEMEELEEEILAALGLSDPY 150


>gnl|CDD|32732 COG2908, COG2908, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 237

 Score = 32.1 bits (73), Expect = 0.086
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME--GLERSILE 160
           A  I+++    +  E   H V  +IHG  H     ++       +     E SILE
Sbjct: 168 AVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHNIPGITYINLGDWVSEGSILE 223


>gnl|CDD|58577 cd04277, ZnMc_serralysin_like, Zinc-dependent metalloprotease,
           serralysin_like subfamily. Serralysins and related
           proteases are important virulence factors in pathogenic
           bacteria. They may be secreted into the medium via a
           mechanism found in gram-negative bacteria, that does not
           require n-terminal signal sequences which are cleaved
           after the transmembrane translocation. A calcium-binding
           domain c-terminal to the metalloprotease domain, which
           contains multiple tandem repeats of a nine-residue motif
           including the pattern GGxGxD, and which forms a parallel
           beta roll may be involved in the translocation mechanism
           and/or substrate binding. Serralysin family members may
           have a broad spectrum of substrates each, including host
           immunoglobulins, complement proteins, cell matrix and
           cytoskeletal proteins, as well as antimicrobial
           peptides..
          Length = 186

 Score = 28.1 bits (62), Expect = 1.4
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 8/97 (8%)

Query: 52  ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111
           E++ ++  V    +    + F   G     +  +   A+    G  +   GDI       
Sbjct: 47  EDVADIDFVEVSDNSGADIRF---GNSSDPDGNTAGYAYYPGSGSGTAYGGDIWFNSS-- 101

Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148
               +       ++    IIH   H LG +H  D + 
Sbjct: 102 ---YDTNSDSPGSYGYQTIIHEIGHALGLEHPGDYNG 135


>gnl|CDD|39400 KOG4199, KOG4199, KOG4199, Uncharacterized conserved protein
           [Function unknown].
          Length = 461

 Score = 26.6 bits (58), Expect = 3.6
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 40  VSNLISKGYF---VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96
           ++ +IS+  F   VKEN+VE S+  +++       FE +GI+    +        +    
Sbjct: 1   MAKVISQDTFDDVVKENVVEFSMTPSEAKEETIKQFEAQGINLANIIKDLSVNPQTGQPV 60

Query: 97  SSLMLGDI 104
            +  +  I
Sbjct: 61  INETVDKI 68


>gnl|CDD|185695 cd01081, Aldose_epim, aldose 1-epimerase superfamily.  Aldose
           1-epimerases or mutarotases are key enzymes of
           carbohydrate metabolism; they catalyze the
           interconversion of the alpha- and beta-anomers of hexose
           sugars such as glucose and galactose. This
           interconversion is an important step that allows anomer
           specific metabolic conversion of sugars. Studies of the
           catalytic mechanism of the best known member of the
           family, galactose mutarotase, have shown a glutamate and
           a histidine residue to be critical for catalysis; the
           glutamate serves as the active site base to initiate the
           reaction by removing the proton from the C-1 hydroxyl
           group of the sugar substrate and the histidine as the
           active site acid to protonate the C-5 ring oxygen.
          Length = 284

 Score = 26.3 bits (58), Expect = 4.6
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 131 IHGFLHLLGYDHVDDKDACVM 151
           IHGF+  L +  V   +    
Sbjct: 75  IHGFVRNLPWRVVATDEEEAS 95


>gnl|CDD|37227 KOG2016, KOG2016, KOG2016, NEDD8-activating complex, APP-BP1/UBA5
           component [Posttranslational modification, protein
           turnover, chaperones].
          Length = 523

 Score = 26.1 bits (57), Expect = 4.7
 Identities = 14/66 (21%), Positives = 30/66 (45%)

Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162
            +V+A  + E     L +      V L++     L G   +  K+  ++E    + L+DL
Sbjct: 121 TVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGTIRISIKEHTIIESHPDNPLDDL 180

Query: 163 GINDPY 168
            +++P+
Sbjct: 181 RLDNPW 186


>gnl|CDD|39858 KOG4659, KOG4659, KOG4659, Uncharacterized conserved protein (Rhs
            family) [Function unknown].
          Length = 1899

 Score = 25.7 bits (56), Expect = 6.0
 Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 3/81 (3%)

Query: 4    KKVNLPRLDLQIAVE---NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60
                LPR +L    E    A  G++         VF + +         V  +    +  
Sbjct: 930  ANGTLPRENLANRWEWRHVAQRGEQSKGSLGRVTVFGRKLRVHGRNLLSVDFDRDTRTEK 989

Query: 61   FTDSHRIETLNFEYRGIDKPT 81
              D  R   L  +Y    +P 
Sbjct: 990  IYDDDRQFLLRIDYDQSGRPI 1010


>gnl|CDD|38059 KOG2848, KOG2848, KOG2848, 1-acyl-sn-glycerol-3-phosphate
           acyltransferase [Lipid transport and metabolism].
          Length = 276

 Score = 25.6 bits (56), Expect = 7.2
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 10/76 (13%)

Query: 99  LMLGDIVLAYEIIEIEANVL--GKEFENHLV-HLIIHGFLHLLGYD-------HVDDKDA 148
              G I   Y +I     +L  G+  ENH +  L  H   +LLG         ++     
Sbjct: 31  AFYGAICSFYGVIASPVCLLRGGRSVENHFIAKLWFHSMKYLLGLRFEVRGEENLPKSKP 90

Query: 149 CVMEGLERSILEDLGI 164
            V+    +S L+ LG+
Sbjct: 91  AVIVSNHQSSLDILGM 106


>gnl|CDD|146601 pfam04054, Not1, CCR4-Not complex component, Not1.  The Ccr4-Not
           complex is a global regulator of transcription that
           affects genes positively and negatively and is thought
           to regulate transcription factor TFIID.
          Length = 375

 Score = 25.3 bits (56), Expect = 8.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168
            LHL G D  + +   + E + R +LE L +N P+
Sbjct: 300 ILHLFGSDPWESQKEDIQEQITRVLLERLIVNKPH 334


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.141    0.408 

Gapped
Lambda     K      H
   0.267   0.0764    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,041,711
Number of extensions: 103158
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 16
Length of query: 171
Length of database: 6,263,737
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,383,754
Effective search space: 368235336
Effective search space used: 368235336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)