RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780427|ref|YP_003064840.1| hypothetical protein CLIBASIA_01560 [Candidatus Liberibacter asiaticus str. psy62] (171 letters) >1xax_A Hypothetical UPF0054 protein HI0004; structural genomics, MMP, hydrolase, protein structure initiative, S2F, structure 2 function project; NMR {Haemophilus influenzae} (A:) Length = 154 Score = 125 bits (315), Expect = 3e-30 Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 11/163 (6%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 + + + + + + E VE+++ D Sbjct: 2 GSVLVDLQIATENIEGLPTEEQIVQWATGAV-------QPEGNE--VEMTVRIVDEAESH 52 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YRG D+PTNVLSFP +LGD+V+ +++E EA+ K H H Sbjct: 53 ELNLTYRGKDRPTNVLSFPFECPDEVEL--PLLGDLVICRQVVEREASEQEKPLMAHWAH 110 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++ LG +DPY + Sbjct: 111 MVVHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYLAE 153 >1xm5_A Hypothetical UPF0054 protein YBEY; structural genomics, protein structure initiative, nysgxrc target T842, PFAM family UPF0054, PSI; 2.70A {Escherichia coli} (A:) Length = 155 Score = 122 bits (307), Expect = 3e-29 Identities = 62/162 (38%), Positives = 86/162 (53%), Gaps = 15/162 (9%) Query: 11 LDLQIAVENALW-GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E+ +E +T V + E+++ D+ + Sbjct: 6 LDLQLACEDNSGLPEESQFQTWLNAVIPQFQEE------------SEVTIRVVDTAESHS 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153 >1oz9_A Hypothetical protein AQ_1354; matrix metalloproteinase type fold, structural genomics, BSGC structure funded by NIH; 1.89A {Aquifex aeolicus} (A:) Length = 150 Score = 117 bits (294), Expect = 9e-28 Identities = 48/158 (30%), Positives = 69/158 (43%), Gaps = 16/158 (10%) Query: 10 RLDLQIAVENALW-GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 R ++ V+ + + E+ + N VELS+ TD I Sbjct: 6 RQKNRVLVKLKKRKVRKDKIEKWAELALSAL-----------GLNNVELSVYITDDQEIR 54 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR DKPT+VLSFP +LGD+V++ + E +A LG E + Sbjct: 55 ELNKTYRKKDKPTDVLSFPMGEEFGGYK---ILGDVVISQDTAERQARELGHSLEEEVKR 111 Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGIN 165 LI+HG +HLLGYDH ++ LE +L L Sbjct: 112 LIVHGIVHLLGYDHEKGGEEEKKFRELENYVLSKLSKA 149 >1tvi_A Hypothetical UPF0054 protein TM1509; alpha + beta, mixed 4-stranded beta sheet, four helix bundle, structural genomics; NMR {Thermotoga maritima} (A:) Length = 172 Score = 114 bits (287), Expect = 7e-27 Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 25/177 (14%) Query: 1 MSVKKVNLPRLDLQIAVENALWG--DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELS 58 S + NL I + G +L+ E + K + + V ++ Sbjct: 10 HSSGRENLYFQGHMIRILGEGKGSKLLENLKEKLEEIVKKEIGD------------VHVN 57 Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 ++ I+ LN ++RG D+PT+VL+FP + G+I + I+E A Sbjct: 58 VILVSEDEIKELNQQFRGQDRPTDVLTFPL-------MEEDVYGEIYVCPLIVEENAREF 110 Query: 119 GKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDL---GINDPYEVD 171 FE L+ ++IHG LHL GYDH +DK++ M ++ +E++ ++P E Sbjct: 111 NNTFEKELLEVVIHGILHLAGYDHEFEDKNSKEMFEKQKKYVEEVWGEWRSNPSEDS 167 >2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP- 9) (92 kDa type IV collagenase) (92...; hydrolase, S1-prime pocket; HET: 4MR; 2.00A {Homo sapiens} (A:1-136) Length = 136 Score = 29.6 bits (65), Expect = 0.22 Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 4/117 (3%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 + + + ++ + + + L+ S + + + Sbjct: 23 LPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHA 82 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 I + E LGK L + H F H LG DH +A +M Sbjct: 83 FP---PGPGIQGDAHFDDDELWSLGKGQGYSLFLVAAHQFGHALGLDHSSVPEA-LM 135 >1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} (A:84-221) Length = 138 Score = 29.1 bits (64), Expect = 0.30 Identities = 7/26 (26%), Positives = 11/26 (42%) Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDAC 149 +L + H H LG H + +A Sbjct: 110 TNLFLVAAHEIGHSLGLFHSANTEAL 135 >1lml_A Leishmanolysin; metalloprotease, glycoprotein; 1.86A {Leishmania major} (A:1-172,A:268-292) Length = 197 Score = 28.8 bits (64), Expect = 0.46 Identities = 11/42 (26%), Positives = 19/42 (45%) Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 +I I A + ++ + ++ H H LG+ D A VM Sbjct: 143 VINIPAANIASRYDQLVTRVVTHEMAHALGFYQADFSKAEVM 184 >1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrolase; HET: MBS; 1.50A {Homo sapiens} (A:) Length = 173 Score = 28.4 bits (62), Expect = 0.50 Identities = 7/28 (25%), Positives = 11/28 (39%) Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDAC 149 +L + H H LG H + +A Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEAL 136 >1eak_A 72 kDa type IV collagenase; hydrolyse, matrix metalloproteinase, gelatinase A; 2.66A {Homo sapiens} (A:80-191,A:363-421) Length = 171 Score = 28.4 bits (63), Expect = 0.53 Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%) Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 L + H F H +G +H D A +M Sbjct: 113 GYSLFLVAAHQFGHAMGLEHSQDPGA-LM 140 >1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} (A:1-135) Length = 135 Score = 28.0 bits (61), Expect = 0.77 Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 1/28 (3%) Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVM 151 +L + H H LG H D A +M Sbjct: 109 YNLHRVAAHELGHSLGLSHSTDIGA-LM 135 >2cki_A Ulilysin; metalloprotease, hypothetical protein, hydrolase, IGF, cancer, metzincin, pappalysin, IGFBP protease; HET: ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A* (A:1-189) Length = 189 Score = 27.7 bits (60), Expect = 0.97 Identities = 4/26 (15%), Positives = 6/26 (23%) Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDAC 149 H H L H+ + Sbjct: 160 FDKGRTATHEIGHWLNLYHIWGDELR 185 >3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A (A:1-133) Length = 133 Score = 27.7 bits (60), Expect = 1.0 Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%) Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVM 151 +L +H H LG H D A VM Sbjct: 105 TNLFLTAVHEIGHSLGLGHSSDPKA-VM 131 >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetical protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} (A:1-126,A:305-409) Length = 231 Score = 27.2 bits (60), Expect = 1.1 Identities = 31/154 (20%), Positives = 63/154 (40%), Gaps = 23/154 (14%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLR-------TLCEVVFAKAVSNLISKGYFVKENIV 55 +K + + R + + N W + L ++ + +AK ++ + VKE + Sbjct: 4 LKDLLVDRKEFEDWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPL 63 Query: 56 ELS--LVFTDSHRIETLNFE---YRGIDKPTNVLSFPTAFASSDGCS----SLMLGDIVL 106 E L F + + LN + Y + KP+ + + +++ S + ML ++ Sbjct: 64 EFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLDS 123 Query: 107 AYEIIE--IEA-----NVLGKEFENHLVHLIIHG 133 II +E + + EF N+ L+IHG Sbjct: 124 KGNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHG 157 >830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} (A:) Length = 168 Score = 27.3 bits (59), Expect = 1.1 Identities = 10/26 (38%), Positives = 12/26 (46%) Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDAC 149 +L + H F H LG DH D A Sbjct: 111 YNLFLVAAHEFGHSLGLDHSKDPGAL 136 >1qib_A Protein (gelatinase A); inhibitor, matrixin, matrix metalloproteinase-2 (MMP-2), metzincin, hydrolase; 2.80A {Homo sapiens} (A:1-133) Length = 133 Score = 26.9 bits (58), Expect = 1.6 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%) Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVM 151 L + H F H +G +H D A +M Sbjct: 107 YSLFLVAAHEFGHAMGLEHSQDPGA-LM 133 >1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} (A:89-200,A:373-400) Length = 140 Score = 26.6 bits (58), Expect = 1.7 Identities = 21/99 (21%), Positives = 30/99 (30%), Gaps = 11/99 (11%) Query: 59 LVFTDSHRIE---TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 L FT + + + F A + + GD + E Sbjct: 47 LTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQGDAHFDDD----EL 102 Query: 116 NVLGKEFE---NHLVHLIIHGFLHLLGYDHVDDKDACVM 151 LGK L + H F H LG DH +A +M Sbjct: 103 WSLGKGVVVPGYSLFLVAAHEFGHALGLDHSSVPEA-LM 140 >1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} (A:1-138) Length = 138 Score = 26.5 bits (57), Expect = 1.9 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%) Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVM 151 L+ + H F H+LG H A +M Sbjct: 111 TDLLQVAAHEFGHVLGLQHTTAAKA-LM 137 >1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} (A:82-193,A:365-392) Length = 140 Score = 25.4 bits (55), Expect = 4.1 Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 11/99 (11%) Query: 59 LVFT---DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 L F+ D +NF A + + + GD + E Sbjct: 47 LRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDD----EL 102 Query: 116 NVLGKEFE---NHLVHLIIHGFLHLLGYDHVDDKDACVM 151 LG+ L + H F H +G +H D A +M Sbjct: 103 WTLGEGQVVRGYSLFLVAAHAFGHAMGLEHSQDPGA-LM 140 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 25.1 bits (55), Expect = 5.1 Identities = 6/14 (42%), Positives = 9/14 (64%) Query: 23 GDEIHLRTLCEVVF 36 D + + +L EVVF Sbjct: 3 ADVMSIESLVEVVF 16 >3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} PDB: 3edg_A 3edi_A (A:1-106) Length = 106 Score = 24.6 bits (53), Expect = 8.6 Identities = 4/17 (23%), Positives = 10/17 (58%) Query: 126 LVHLIIHGFLHLLGYDH 142 +++H H++G+ H Sbjct: 87 KFGIVVHELGHVVGFWH 103 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.321 0.141 0.408 Gapped Lambda K H 0.267 0.0420 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,269,557 Number of extensions: 52560 Number of successful extensions: 106 Number of sequences better than 10.0: 1 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 22 Length of query: 171 Length of database: 4,956,049 Length adjustment: 82 Effective length of query: 89 Effective length of database: 2,184,039 Effective search space: 194379471 Effective search space used: 194379471 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.2 bits)