RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780427|ref|YP_003064840.1| hypothetical protein
CLIBASIA_01560 [Candidatus Liberibacter asiaticus str. psy62]
         (171 letters)



>1xax_A Hypothetical UPF0054 protein HI0004; structural genomics,
           MMP, hydrolase, protein structure initiative, S2F,
           structure 2 function project; NMR {Haemophilus
           influenzae} (A:)
          Length = 154

 Score =  125 bits (315), Expect = 3e-30
 Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 11/163 (6%)

Query: 9   PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68
             + + + +             + +                  E  VE+++   D     
Sbjct: 2   GSVLVDLQIATENIEGLPTEEQIVQWATGAV-------QPEGNE--VEMTVRIVDEAESH 52

Query: 69  TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128
            LN  YRG D+PTNVLSFP            +LGD+V+  +++E EA+   K    H  H
Sbjct: 53  ELNLTYRGKDRPTNVLSFPFECPDEVEL--PLLGDLVICRQVVEREASEQEKPLMAHWAH 110

Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171
           +++HG LHLLGYDH++D +A  ME LE  I++ LG +DPY  +
Sbjct: 111 MVVHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYLAE 153


>1xm5_A Hypothetical UPF0054 protein YBEY; structural genomics,
           protein structure initiative, nysgxrc target T842, PFAM
           family UPF0054, PSI; 2.70A {Escherichia coli} (A:)
          Length = 155

 Score =  122 bits (307), Expect = 3e-29
 Identities = 62/162 (38%), Positives = 86/162 (53%), Gaps = 15/162 (9%)

Query: 11  LDLQIAVENALW-GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69
           LDLQ+A E+     +E   +T    V  +                 E+++   D+    +
Sbjct: 6   LDLQLACEDNSGLPEESQFQTWLNAVIPQFQEE------------SEVTIRVVDTAESHS 53

Query: 70  LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129
           LN  YRG DKPTNVLSFP  F    G    +LGD+V+  +++E EA   GK  E H  H+
Sbjct: 54  LNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHM 111

Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171
           ++HG LHLLGYDH++D +A  ME LE  I+  LG  DPY  +
Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153


>1oz9_A Hypothetical protein AQ_1354; matrix metalloproteinase type
           fold, structural genomics, BSGC structure funded by NIH;
           1.89A {Aquifex aeolicus} (A:)
          Length = 150

 Score =  117 bits (294), Expect = 9e-28
 Identities = 48/158 (30%), Positives = 69/158 (43%), Gaps = 16/158 (10%)

Query: 10  RLDLQIAVENALW-GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68
           R   ++ V+       +  +    E+  +               N VELS+  TD   I 
Sbjct: 6   RQKNRVLVKLKKRKVRKDKIEKWAELALSAL-----------GLNNVELSVYITDDQEIR 54

Query: 69  TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128
            LN  YR  DKPT+VLSFP            +LGD+V++ +  E +A  LG   E  +  
Sbjct: 55  ELNKTYRKKDKPTDVLSFPMGEEFGGYK---ILGDVVISQDTAERQARELGHSLEEEVKR 111

Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGIN 165
           LI+HG +HLLGYDH    ++      LE  +L  L   
Sbjct: 112 LIVHGIVHLLGYDHEKGGEEEKKFRELENYVLSKLSKA 149


>1tvi_A Hypothetical UPF0054 protein TM1509; alpha + beta, mixed
           4-stranded beta sheet, four helix bundle, structural
           genomics; NMR {Thermotoga maritima} (A:)
          Length = 172

 Score =  114 bits (287), Expect = 7e-27
 Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 25/177 (14%)

Query: 1   MSVKKVNLPRLDLQIAVENALWG--DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELS 58
            S  + NL      I +     G     +L+   E +  K + +            V ++
Sbjct: 10  HSSGRENLYFQGHMIRILGEGKGSKLLENLKEKLEEIVKKEIGD------------VHVN 57

Query: 59  LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118
           ++      I+ LN ++RG D+PT+VL+FP            + G+I +   I+E  A   
Sbjct: 58  VILVSEDEIKELNQQFRGQDRPTDVLTFPL-------MEEDVYGEIYVCPLIVEENAREF 110

Query: 119 GKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDL---GINDPYEVD 171
              FE  L+ ++IHG LHL GYDH  +DK++  M   ++  +E++     ++P E  
Sbjct: 111 NNTFEKELLEVVIHGILHLAGYDHEFEDKNSKEMFEKQKKYVEEVWGEWRSNPSEDS 167


>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP- 9) (92 kDa
           type IV collagenase) (92...; hydrolase, S1-prime pocket;
           HET: 4MR; 2.00A {Homo sapiens} (A:1-136)
          Length = 136

 Score = 29.6 bits (65), Expect = 0.22
 Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 4/117 (3%)

Query: 35  VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94
           +    + +  ++ + +   +  L+     S   + +                     +  
Sbjct: 23  LPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHA 82

Query: 95  GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151
                    I       + E   LGK     L  +  H F H LG DH    +A +M
Sbjct: 83  FP---PGPGIQGDAHFDDDELWSLGKGQGYSLFLVAAHQFGHALGLDHSSVPEA-LM 135


>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast,
           collagen degradation; 1.90A {Homo sapiens} (A:84-221)
          Length = 138

 Score = 29.1 bits (64), Expect = 0.30
 Identities = 7/26 (26%), Positives = 11/26 (42%)

Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDAC 149
            +L  +  H   H LG  H  + +A 
Sbjct: 110 TNLFLVAAHEIGHSLGLFHSANTEAL 135


>1lml_A Leishmanolysin; metalloprotease, glycoprotein; 1.86A
           {Leishmania major} (A:1-172,A:268-292)
          Length = 197

 Score = 28.8 bits (64), Expect = 0.46
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151
           +I I A  +   ++  +  ++ H   H LG+   D   A VM
Sbjct: 143 VINIPAANIASRYDQLVTRVVTHEMAHALGFYQADFSKAEVM 184


>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc
           protease, inhibited, hydrolase; HET: MBS; 1.50A {Homo
           sapiens} (A:)
          Length = 173

 Score = 28.4 bits (62), Expect = 0.50
 Identities = 7/28 (25%), Positives = 11/28 (39%)

Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDAC 149
              +L  +  H   H LG  H  + +A 
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEAL 136


>1eak_A 72 kDa type IV collagenase; hydrolyse, matrix
           metalloproteinase, gelatinase A; 2.66A {Homo sapiens}
           (A:80-191,A:363-421)
          Length = 171

 Score = 28.4 bits (63), Expect = 0.53
 Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVM 151
              L  +  H F H +G +H  D  A +M
Sbjct: 113 GYSLFLVAAHQFGHAMGLEHSQDPGA-LM 140


>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A
           {Homo sapiens} (A:1-135)
          Length = 135

 Score = 28.0 bits (61), Expect = 0.77
 Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 1/28 (3%)

Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVM 151
            +L  +  H   H LG  H  D  A +M
Sbjct: 109 YNLHRVAAHELGHSLGLSHSTDIGA-LM 135


>2cki_A Ulilysin; metalloprotease, hypothetical protein, hydrolase,
           IGF, cancer, metzincin, pappalysin, IGFBP protease; HET:
           ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A*
           (A:1-189)
          Length = 189

 Score = 27.7 bits (60), Expect = 0.97
 Identities = 4/26 (15%), Positives = 6/26 (23%)

Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDAC 149
                   H   H L   H+   +  
Sbjct: 160 FDKGRTATHEIGHWLNLYHIWGDELR 185


>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin
           domain, catalytic domain, domain interaction., calcium,
           extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
           (A:1-133)
          Length = 133

 Score = 27.7 bits (60), Expect = 1.0
 Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)

Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVM 151
            +L    +H   H LG  H  D  A VM
Sbjct: 105 TNLFLTAVHEIGHSLGLGHSSDPKA-VM 131


>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta
           propeller, type 2 promoters, transcription, hypothetical
           protein, preinitiation complex, yeast RNA polymerase
           III; 3.2A {Saccharomyces cerevisiae} (A:1-126,A:305-409)
          Length = 231

 Score = 27.2 bits (60), Expect = 1.1
 Identities = 31/154 (20%), Positives = 63/154 (40%), Gaps = 23/154 (14%)

Query: 3   VKKVNLPRLDLQIAVENALWGDEIHLR-------TLCEVVFAKAVSNLISKGYFVKENIV 55
           +K + + R + +    N  W  +  L        ++ +  +AK ++      + VKE  +
Sbjct: 4   LKDLLVDRKEFEDWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPL 63

Query: 56  ELS--LVFTDSHRIETLNFE---YRGIDKPTNVLSFPTAFASSDGCS----SLMLGDIVL 106
           E    L F  + +   LN +   Y  + KP+ +  +    +++   S    + ML ++  
Sbjct: 64  EFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLDS 123

Query: 107 AYEIIE--IEA-----NVLGKEFENHLVHLIIHG 133
              II   +E      + +  EF N+   L+IHG
Sbjct: 124 KGNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHG 157


>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A
           {Homo sapiens} (A:)
          Length = 168

 Score = 27.3 bits (59), Expect = 1.1
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDAC 149
            +L  +  H F H LG DH  D  A 
Sbjct: 111 YNLFLVAAHEFGHSLGLDHSKDPGAL 136


>1qib_A Protein (gelatinase A); inhibitor, matrixin, matrix
           metalloproteinase-2 (MMP-2), metzincin, hydrolase; 2.80A
           {Homo sapiens} (A:1-133)
          Length = 133

 Score = 26.9 bits (58), Expect = 1.6
 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVM 151
             L  +  H F H +G +H  D  A +M
Sbjct: 107 YSLFLVAAHEFGHAMGLEHSQDPGA-LM 133


>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by
           helices, hydrolase; 2.50A {Homo sapiens}
           (A:89-200,A:373-400)
          Length = 140

 Score = 26.6 bits (58), Expect = 1.7
 Identities = 21/99 (21%), Positives = 30/99 (30%), Gaps = 11/99 (11%)

Query: 59  LVFTDSHRIE---TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115
           L FT  +  +    + F                  A +      + GD     +    E 
Sbjct: 47  LTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQGDAHFDDD----EL 102

Query: 116 NVLGKEFE---NHLVHLIIHGFLHLLGYDHVDDKDACVM 151
             LGK        L  +  H F H LG DH    +A +M
Sbjct: 103 WSLGKGVVVPGYSLFLVAAHEFGHALGLDHSSVPEA-LM 140


>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase;
           HET: CPS RXP; 2.60A {Mus musculus} (A:1-138)
          Length = 138

 Score = 26.5 bits (57), Expect = 1.9
 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVM 151
             L+ +  H F H+LG  H     A +M
Sbjct: 111 TDLLQVAAHEFGHVLGLQHTTAAKA-LM 137


>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease),
           FULL-length, metalloproteinase; 2.80A {Homo sapiens}
           (A:82-193,A:365-392)
          Length = 140

 Score = 25.4 bits (55), Expect = 4.1
 Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 11/99 (11%)

Query: 59  LVFT---DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115
           L F+   D      +NF                  A +    + + GD     +    E 
Sbjct: 47  LRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDD----EL 102

Query: 116 NVLGKEFE---NHLVHLIIHGFLHLLGYDHVDDKDACVM 151
             LG+        L  +  H F H +G +H  D  A +M
Sbjct: 103 WTLGEGQVVRGYSLFLVAAHAFGHAMGLEHSQDPGA-LM 140


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 25.1 bits (55), Expect = 5.1
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 23 GDEIHLRTLCEVVF 36
           D + + +L EVVF
Sbjct: 3  ADVMSIESLVEVVF 16


>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative
           splicing, calcium, chondrogenesis, cleavage on PAIR of
           basic residues, cytokine; 1.25A {Homo sapiens} PDB:
           3edg_A 3edi_A (A:1-106)
          Length = 106

 Score = 24.6 bits (53), Expect = 8.6
 Identities = 4/17 (23%), Positives = 10/17 (58%)

Query: 126 LVHLIIHGFLHLLGYDH 142
              +++H   H++G+ H
Sbjct: 87  KFGIVVHELGHVVGFWH 103


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.321    0.141    0.408 

Gapped
Lambda     K      H
   0.267   0.0420    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,269,557
Number of extensions: 52560
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 22
Length of query: 171
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 89
Effective length of database: 2,184,039
Effective search space: 194379471
Effective search space used: 194379471
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.2 bits)