RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780427|ref|YP_003064840.1| hypothetical protein
CLIBASIA_01560 [Candidatus Liberibacter asiaticus str. psy62]
(171 letters)
>1xax_A Hypothetical UPF0054 protein HI0004; structural genomics, MMP,
hydrolase, protein structure initiative, S2F, structure
2 function project; NMR {Haemophilus influenzae}
Length = 154
Score = 123 bits (310), Expect = 2e-29
Identities = 60/162 (37%), Positives = 84/162 (51%), Gaps = 15/162 (9%)
Query: 11 LDLQIAVENALW-GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69
+DLQIA EN E + + N VE+++ D
Sbjct: 6 VDLQIATENIEGLPTEEQIVQWATGAVQP------------EGNEVEMTVRIVDEAESHE 53
Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129
LN YRG D+PTNVLSFP F D +LGD+V+ +++E EA+ K H H+
Sbjct: 54 LNLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREASEQEKPLMAHWAHM 111
Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171
++HG LHLLGYDH++D +A ME LE I++ LG +DPY +
Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYLAE 153
>1xm5_A Hypothetical UPF0054 protein YBEY; structural genomics, protein
structure initiative, nysgxrc target T842, PFAM family
UPF0054, PSI; 2.70A {Escherichia coli} SCOP: d.92.1.15
Length = 155
Score = 122 bits (307), Expect = 4e-29
Identities = 62/162 (38%), Positives = 87/162 (53%), Gaps = 15/162 (9%)
Query: 11 LDLQIAVENALW-GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69
LDLQ+A E+ +E +T V + + E+++ D+ +
Sbjct: 6 LDLQLACEDNSGLPEESQFQTWLNAVIPQ------------FQEESEVTIRVVDTAESHS 53
Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129
LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E H H+
Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHM 111
Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171
++HG LHLLGYDH++D +A ME LE I+ LG DPY +
Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153
>1tvi_A Hypothetical UPF0054 protein TM1509; alpha + beta, mixed 4-stranded
beta sheet, four helix bundle, structural genomics; NMR
{Thermotoga maritima} SCOP: d.92.1.15
Length = 172
Score = 108 bits (271), Expect = 7e-25
Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 15/163 (9%)
Query: 16 AVENALWGDEIHLRTLCEVVFAKAVSNLISK-GYFVKENI--VELSLVFTDSHRIETLNF 72
EN + + +R L E +K + NL K VK+ I V ++++ I+ LN
Sbjct: 13 GRENLYFQGHM-IRILGEGKGSKLLENLKEKLEEIVKKEIGDVHVNVILVSEDEIKELNQ 71
Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132
++RG D+PT+VL+FP + G+I + I+E A FE L+ ++IH
Sbjct: 72 QFRGQDRPTDVLTFPL-------MEEDVYGEIYVCPLIVEENAREFNNTFEKELLEVVIH 124
Query: 133 GFLHLLGYDH-VDDKDACVMEGLERSILEDL---GINDPYEVD 171
G LHL GYDH +DK++ M ++ +E++ ++P E
Sbjct: 125 GILHLAGYDHEFEDKNSKEMFEKQKKYVEEVWGEWRSNPSEDS 167
>1oz9_A Hypothetical protein AQ_1354; matrix metalloproteinase type fold,
structural genomics, BSGC structure funded by NIH; 1.89A
{Aquifex aeolicus} SCOP: d.92.1.15
Length = 150
Score = 106 bits (265), Expect = 3e-24
Identities = 45/115 (39%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAY 108
+ N VELS+ TD I LN YR DKPT+VLSFP + +LGD+V++
Sbjct: 35 ALGLNNVELSVYITDDQEIRELNKTYRKKDKPTDVLSFP---MGEEFGGYKILGDVVISQ 91
Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD-ACVMEGLERSILEDL 162
+ E +A LG E + LI+HG +HLLGYDH + LE +L L
Sbjct: 92 DTAERQARELGHSLEEEVKRLIVHGIVHLLGYDHEKGGEEEKKFRELENYVLSKL 146
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 2006
Score = 31.8 bits (72), Expect = 0.088
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 50/137 (36%)
Query: 23 GDEIHLRTLCEVVFAKAV-------------SNL----ISKG----YFVKEN---IVELS 58
D + + +L EVVF + + SN I+ G F +E +VE
Sbjct: 1774 ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
Query: 59 ------LVFTDSHRIETLNF----EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAY 108
LV ++ +E + + R +D TNVL+F + L I
Sbjct: 1834 GKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNF------------IKLQKI---- 1877
Query: 109 EIIEIEANVLGKEFENH 125
+IIE++ ++ +E E H
Sbjct: 1878 DIIELQKSLSLEEVEGH 1894
Score = 28.4 bits (63), Expect = 0.88
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 26/84 (30%)
Query: 4 KKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTD 63
V+ D+QI V + G + LR L ++ E IV+ +
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGSD--LRVLSG--------SIS-------ERIVD--CIIRL 486
Query: 64 S-HRIETLNFEYRGIDKPTNVLSF 86
T F K T++L F
Sbjct: 487 PVKWETTTQF------KATHILDF 504
Score = 27.2 bits (60), Expect = 2.0
Identities = 33/173 (19%), Positives = 53/173 (30%), Gaps = 65/173 (37%)
Query: 13 LQIAV---ENA-LWGDEIH-----LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTD 63
L + + EN L G++IH L + K LI K Y ++
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK-TKELI-KNYI---TARIMA----- 133
Query: 64 SHRIETLNFEYRGIDKPTNVLSFPTAF--ASSDGCSSLM---------------LGDIVL 106
R DK + +A A +G + L+ L D+
Sbjct: 134 ----------KRPFDKKS-----NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 107 AY-----EIIEIEANVLGK------EFENHLVH-LIIHGFLHLLGYDHVDDKD 147
Y ++I+ A L + + E L I +L + DKD
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE--NPSNTPDKD 229
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP- 9) (92 kDa type IV
collagenase) (92...; hydrolase, S1-prime pocket; HET:
4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A*
2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Length = 159
Score = 31.1 bits (69), Expect = 0.12
Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 4/112 (3%)
Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99
+ + ++ + + + L+ S + + +
Sbjct: 28 IDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGP 87
Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151
+ + E LGK L + H F H LG DH +A +M
Sbjct: 88 GIQGDA---HFDDDELWSLGKGQGYSLFLVAAHQFGHALGLDHSSVPEA-LM 135
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo
sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 1eub_A*
1xuc_A* 1xud_A* 1xur_A* 3elm_A* 2ow9_A* 2ozr_A* 2d1n_A*
1fls_A* 1fm1_A* 1ztq_A* 2e2d_A 2pjt_A* 1cxv_A*
Length = 168
Score = 30.6 bits (68), Expect = 0.16
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACV 150
+L + H F H LG DH D A +
Sbjct: 111 YNLFLVAAHEFGHSLGLDHSKDPGALM 137
>1qib_A Protein (gelatinase A); inhibitor, matrixin, matrix
metalloproteinase-2 (MMP-2), metzincin, hydrolase; 2.80A
{Homo sapiens} SCOP: d.92.1.11 PDB: 1hov_A*
Length = 161
Score = 30.6 bits (68), Expect = 0.20
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151
+ + E LGK L + H F H +G +H D A +M
Sbjct: 85 TGVGGDSHFDDDELWSLGKGVGYSLFLVAAHEFGHAMGLEHSQDPGA-LM 133
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease,
inhibited, hydrolase; HET: MBS; 1.50A {Homo sapiens}
SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A*
1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A*
1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A*
1ciz_A* 1caq_A* ...
Length = 173
Score = 30.2 bits (67), Expect = 0.27
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 12/78 (15%)
Query: 74 YRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133
+ D P NVL A A + G + GD + + +L + H
Sbjct: 72 FYPFDGPGNVL----AHAYAPG--PGINGDAHFDDDEQWTKDT-----TGTNLFLVAAHE 120
Query: 134 FLHLLGYDHVDDKDACVM 151
H LG H + +A +M
Sbjct: 121 IGHSLGLFHSANTEA-LM 137
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor,
metalloprotease, dependent, peptidase; 1.70A {Tannerella
forsythia} PDB: 2xs3_A
Length = 167
Score = 29.7 bits (66), Expect = 0.35
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166
L+ + H HLLG +H + A +M I L +D
Sbjct: 113 IDLITVAAHEIGHLLGIEHSNVSSA-LMYPYYTGIKRQLDNDD 154
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo
sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A*
2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A*
Length = 168
Score = 29.0 bits (64), Expect = 0.58
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151
G + + + E +L + H H LG H D A +M
Sbjct: 87 GPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHSTDIGA-LM 135
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12,
complex (elastase/inhibitor), acetohydroxamic acid,
hydrolase; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB:
1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A
1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A*
3f18_A* 3f19_A* 3f1a_A* 2wo9_A* 2wo8_A* 2woa_A* ...
Length = 159
Score = 28.7 bits (63), Expect = 0.60
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVM 151
+L +H H LG H D A VM
Sbjct: 106 TNLFLTAVHEIGHSLGLGHSSDPKA-VM 132
>1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A
{Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB:
1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P
Length = 479
Score = 28.7 bits (63), Expect = 0.61
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 5/96 (5%)
Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111
++ L+ ++ + F D N+ A+A G G Y
Sbjct: 113 SDVANLTFTEVTGNKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGA-GSSWYNYN-- 169
Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147
++N+ E + H H LG H + +
Sbjct: 170 --QSNIRNPGSEEYGRQTFTHEIGHALGLAHPGEYN 203
>1mmq_A Matrilysin; metalloprotease; HET: RRS; 1.90A {Homo sapiens} SCOP:
d.92.1.11 PDB: 1mmp_A* 1mmr_A* 2ddy_A*
Length = 170
Score = 28.7 bits (63), Expect = 0.67
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVM 151
+ ++ H H LG H D +A VM
Sbjct: 112 INFLYAATHELGHSLGMGHSSDPNA-VM 138
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics,
structural proteomics in europe, spine, spine-2,
spine2-complexes, hydrolase; HET: NGH; NMR {Homo
sapiens}
Length = 160
Score = 28.4 bits (62), Expect = 0.81
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151
G+ + + +L + H F H LG H D A +M
Sbjct: 84 GEGLGGDTHFDNAEKWTMGTNGFNLFTVAAHEFGHALGLAHSTDPSA-LM 132
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen
degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2
d.92.1.11
Length = 255
Score = 28.3 bits (62), Expect = 0.88
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVM 151
+L + H H LG H + +A +M
Sbjct: 193 TNLFLVAAHEIGHSLGLFHSANTEA-LM 219
>2x7m_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi;
1.50A {Methanopyrus kandleri}
Length = 195
Score = 28.5 bits (63), Expect = 0.95
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153
+ +V + H H G H D+ CVM
Sbjct: 135 YLERVVKELTHELGHTFGLGHCPDR-NCVMSF 165
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex
(metalloprotease/inhibitor); HET: BSI; 1.20A {Homo
sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A
1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A*
3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A
1a86_A* 1jh1_A* 1a85_A ...
Length = 163
Score = 28.2 bits (62), Expect = 1.0
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151
+L + H F H LG H D A +M
Sbjct: 107 SANYNLFLVAAHEFGHSLGLAHSSDPGA-LM 136
>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type -
matrix metalloproteinase, batimastat, hydroxamate
inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo
sapiens} SCOP: d.92.1.11
Length = 169
Score = 27.7 bits (60), Expect = 1.2
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVM 151
N L + +H H LG +H +D A +M
Sbjct: 114 GNDLFLVAVHELGHALGLEHSNDPTA-IM 141
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET:
CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Length = 165
Score = 27.4 bits (60), Expect = 1.6
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVM 151
L+ + H F H+LG H A +M
Sbjct: 109 QGTDLLQVAAHEFGHVLGLQHTTAAKA-LM 137
>3lmc_A Peptidase, zinc-dependent; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Methanocorpusculum labreanum}
Length = 210
Score = 26.9 bits (59), Expect = 2.3
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153
+ +V H HL G H D+ C+M
Sbjct: 139 LIDRIVKEGAHEIGHLFGLGHCDNP-GCIMYC 169
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite,
structural proteomics in europe, spine, structural
genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens}
SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Length = 450
Score = 26.6 bits (58), Expect = 2.7
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVM 151
+L + H H LG H D A +
Sbjct: 191 YNLHRVAAHELGHSLGLSHSTDIGALMY 218
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain,
catalytic domain, domain interaction., calcium,
extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Length = 365
Score = 25.7 bits (55), Expect = 5.2
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVME 152
+L +H H LG H D A +
Sbjct: 105 TNLFLTAVHEIGHSLGLGHSSDPKAVMFP 133
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper
transport, copper, transport, polymorphism, glycoprotein,
multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens}
SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1kcw_A*
Length = 1065
Score = 25.7 bits (55), Expect = 6.1
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAY-EIIEIEANVLGKEFENH 125
I+T + ++K + +G L + + + + +G E + H
Sbjct: 935 IKTYSDHPEKVNKDDEEFIESNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLH 994
Query: 126 LVHLIIHGFLHL 137
VH H F +
Sbjct: 995 TVHFHGHSFQYK 1006
>1eak_A 72 kDa type IV collagenase; hydrolyse, matrix metalloproteinase,
gelatinase A; 2.66A {Homo sapiens} SCOP: a.20.1.2
d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A
Length = 421
Score = 25.4 bits (55), Expect = 6.9
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 132 HGFLHLLGYDHVDDKDA 148
H F H +G +H D A
Sbjct: 372 HQFGHAMGLEHSQDPGA 388
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 24.8 bits (53), Expect = 9.7
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYF-VKENIVEL 57
K + DL+ VE A W + + E V +VS L + VKE ++EL
Sbjct: 580 CAKYGIAPGDLRRIVETAEWLSN-AMNRIAEEVGNTSVSGLTERIKHGVKEELLEL 634
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.141 0.408
Gapped
Lambda K H
0.267 0.0464 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,451,162
Number of extensions: 62920
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 33
Length of query: 171
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 85
Effective length of database: 3,608,246
Effective search space: 306700910
Effective search space used: 306700910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.8 bits)