RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780427|ref|YP_003064840.1| hypothetical protein
CLIBASIA_01560 [Candidatus Liberibacter asiaticus str. psy62]
(171 letters)
>d1xm5a_ d.92.1.15 (A:) Hypothetical protein YbeY {Escherichia coli
[TaxId: 562]}
Length = 152
Score = 118 bits (298), Expect = 2e-28
Identities = 62/159 (38%), Positives = 86/159 (54%), Gaps = 15/159 (9%)
Query: 11 LDLQIAVENALW-GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69
LDLQ+A E+ +E +T V + + E+++ D+ +
Sbjct: 6 LDLQLACEDNSGLPEESQFQTWLNAVIPQ------------FQEESEVTIRVVDTAESHS 53
Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129
LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E H H+
Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHM 111
Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168
++HG LHLLGYDH++D +A ME LE I+ LG DPY
Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPY 150
>d1oz9a_ d.92.1.15 (A:) Hypothetical protein Aq_1354 {Aquifex
aeolicus [TaxId: 63363]}
Length = 141
Score = 100 bits (251), Expect = 5e-23
Identities = 45/111 (40%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112
N VELS+ TD I LN YR DKPT+VLSFP + +LGD+V++ + E
Sbjct: 32 NNVELSVYITDDQEIRELNKTYRKKDKPTDVLSFP---MGEEFGGYKILGDVVISQDTAE 88
Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD-ACVMEGLERSILEDL 162
+A LG E + LI+HG +HLLGYDH + LE +L L
Sbjct: 89 RQARELGHSLEEEVKRLIVHGIVHLLGYDHEKGGEEEKKFRELENYVLSKL 139
>d1tvia_ d.92.1.15 (A:) Hypothetical protein TM1509 {Thermotoga
maritima [TaxId: 2336]}
Length = 150
Score = 99.7 bits (248), Expect = 1e-22
Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 13/129 (10%)
Query: 49 FVKENI--VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVL 106
VK+ I V ++++ I+ LN ++RG D+PT+VL+FP + G+I +
Sbjct: 24 IVKKEIGDVHVNVILVSEDEIKELNQQFRGQDRPTDVLTFPL-------MEEDVYGEIYV 76
Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDL--- 162
I+E A FE L+ ++IHG LHL GYDH +DK++ M ++ +E++
Sbjct: 77 CPLIVEENAREFNNTFEKELLEVVIHGILHLAGYDHEFEDKNSKEMFEKQKKYVEEVWGE 136
Query: 163 GINDPYEVD 171
++P E
Sbjct: 137 WRSNPSEDS 145
>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 159
Score = 31.8 bits (71), Expect = 0.034
Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 4/112 (3%)
Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99
+ + ++ + + + L+ S + + +
Sbjct: 28 IDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGP 87
Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151
+ + E LGK L + H F H LG DH +A +M
Sbjct: 88 GIQGDA---HFDDDELWSLGKGQGYSLFLVAAHQFGHALGLDHSSVPEA-LM 135
>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens),
fibroblast [TaxId: 9606]}
Length = 168
Score = 29.9 bits (66), Expect = 0.12
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVM 151
+L + H H LG H + +A +M
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEA-LM 137
>d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 169
Score = 29.8 bits (66), Expect = 0.14
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACV 150
+L + H F H LG DH D A +
Sbjct: 111 YNLFLVAAHEFGHSLGLDHSKDPGALM 137
>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 28.8 bits (63), Expect = 0.24
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVM 151
N L + +H H LG +H +D A +M
Sbjct: 115 NDLFLVAVHELGHALGLEHSNDPTA-IM 141
>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 158
Score = 28.4 bits (62), Expect = 0.36
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVM 151
+L +H H LG H D A VM
Sbjct: 105 TNLFLTAVHEIGHSLGLGHSSDPKA-VM 131
>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 28.3 bits (62), Expect = 0.41
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVM 151
+ ++ H H LG H D +A VM
Sbjct: 110 LGINFLYAATHELGHSLGMGHSSDPNA-VM 138
>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 163
Score = 27.9 bits (61), Expect = 0.43
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 9/96 (9%)
Query: 59 LVFTDSHRIE---TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115
L+FT + E + F R + A + + GD + E
Sbjct: 47 LIFTRISQGEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHF-----DAEE 101
Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151
+L + H F H LG H D A +M
Sbjct: 102 TWTNTSANYNLFLVAAHEFGHSLGLAHSSDPGA-LM 136
>d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 162
Score = 27.5 bits (60), Expect = 0.56
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVM 151
L+ + H F H+LG H A +M
Sbjct: 111 TDLLQVAAHEFGHVLGLQHTTAAKA-LM 137
>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 157
Score = 26.8 bits (58), Expect = 0.96
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVM 151
E +L + H H LG H D A +M
Sbjct: 102 REYNLHRVAAHELGHSLGLSHSTDIGA-LM 130
>d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId:
9606]}
Length = 161
Score = 26.8 bits (58), Expect = 1.1
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVM 151
L + H F H +G +H D A +M
Sbjct: 107 YSLFLVAAHEFGHAMGLEHSQDPGA-LM 133
>d1lmla_ d.92.1.3 (A:) Leishmanolysin {Leishmania major [TaxId:
5664]}
Length = 475
Score = 24.7 bits (53), Expect = 3.9
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 83 VLSFPT---AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139
V S P+ A + C D A +I I A + ++ + ++ H H LG
Sbjct: 115 VASVPSEEGVLAWATTCQ--TFSDGHPAVGVINIPAANIASRYDQLVTRVVTHEMAHALG 172
Query: 140 YDH 142
+
Sbjct: 173 FSG 175
>d1sa3a_ c.52.1.23 (A:) Restriction endonuclease MspI {Moraxella sp.
[TaxId: 479]}
Length = 262
Score = 24.2 bits (52), Expect = 5.8
Identities = 5/27 (18%), Positives = 14/27 (51%)
Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIH 132
L + + ++ LGK +E +++ +
Sbjct: 18 LPHTQHGVTSDRLGKLYEKYILDIFKD 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.141 0.408
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 632,257
Number of extensions: 27636
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 18
Length of query: 171
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,322,926
Effective search space: 121709192
Effective search space used: 121709192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.6 bits)