RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780427|ref|YP_003064840.1| hypothetical protein CLIBASIA_01560 [Candidatus Liberibacter asiaticus str. psy62] (171 letters) >d1xm5a_ d.92.1.15 (A:) Hypothetical protein YbeY {Escherichia coli [TaxId: 562]} Length = 152 Score = 118 bits (298), Expect = 2e-28 Identities = 62/159 (38%), Positives = 86/159 (54%), Gaps = 15/159 (9%) Query: 11 LDLQIAVENALW-GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E+ +E +T V + + E+++ D+ + Sbjct: 6 LDLQLACEDNSGLPEESQFQTWLNAVIPQ------------FQEESEVTIRVVDTAESHS 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPY 150 >d1oz9a_ d.92.1.15 (A:) Hypothetical protein Aq_1354 {Aquifex aeolicus [TaxId: 63363]} Length = 141 Score = 100 bits (251), Expect = 5e-23 Identities = 45/111 (40%), Positives = 59/111 (53%), Gaps = 4/111 (3%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 N VELS+ TD I LN YR DKPT+VLSFP + +LGD+V++ + E Sbjct: 32 NNVELSVYITDDQEIRELNKTYRKKDKPTDVLSFP---MGEEFGGYKILGDVVISQDTAE 88 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD-ACVMEGLERSILEDL 162 +A LG E + LI+HG +HLLGYDH + LE +L L Sbjct: 89 RQARELGHSLEEEVKRLIVHGIVHLLGYDHEKGGEEEKKFRELENYVLSKL 139 >d1tvia_ d.92.1.15 (A:) Hypothetical protein TM1509 {Thermotoga maritima [TaxId: 2336]} Length = 150 Score = 99.7 bits (248), Expect = 1e-22 Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 13/129 (10%) Query: 49 FVKENI--VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVL 106 VK+ I V ++++ I+ LN ++RG D+PT+VL+FP + G+I + Sbjct: 24 IVKKEIGDVHVNVILVSEDEIKELNQQFRGQDRPTDVLTFPL-------MEEDVYGEIYV 76 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDL--- 162 I+E A FE L+ ++IHG LHL GYDH +DK++ M ++ +E++ Sbjct: 77 CPLIVEENAREFNNTFEKELLEVVIHGILHLAGYDHEFEDKNSKEMFEKQKKYVEEVWGE 136 Query: 163 GINDPYEVD 171 ++P E Sbjct: 137 WRSNPSEDS 145 >d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} Length = 159 Score = 31.8 bits (71), Expect = 0.034 Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 4/112 (3%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + + ++ + + + L+ S + + + Sbjct: 28 IDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGP 87 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 + + E LGK L + H F H LG DH +A +M Sbjct: 88 GIQGDA---HFDDDELWSLGKGQGYSLFLVAAHQFGHALGLDHSSVPEA-LM 135 >d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]} Length = 168 Score = 29.9 bits (66), Expect = 0.12 Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%) Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 +L + H H LG H + +A +M Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEA-LM 137 >d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxId: 9606]} Length = 169 Score = 29.8 bits (66), Expect = 0.14 Identities = 10/27 (37%), Positives = 13/27 (48%) Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACV 150 +L + H F H LG DH D A + Sbjct: 111 YNLFLVAAHEFGHSLGLDHSKDPGALM 137 >d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]} Length = 169 Score = 28.8 bits (63), Expect = 0.24 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVM 151 N L + +H H LG +H +D A +M Sbjct: 115 NDLFLVAVHELGHALGLEHSNDPTA-IM 141 >d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human (Homo sapiens) [TaxId: 9606]} Length = 158 Score = 28.4 bits (62), Expect = 0.36 Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%) Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVM 151 +L +H H LG H D A VM Sbjct: 105 TNLFLTAVHEIGHSLGLGHSSDPKA-VM 131 >d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9606]} Length = 166 Score = 28.3 bits (62), Expect = 0.41 Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%) Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 + ++ H H LG H D +A VM Sbjct: 110 LGINFLYAATHELGHSLGMGHSSDPNA-VM 138 >d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo sapiens) [TaxId: 9606]} Length = 163 Score = 27.9 bits (61), Expect = 0.43 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 9/96 (9%) Query: 59 LVFTDSHRIE---TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 L+FT + E + F R + A + + GD + E Sbjct: 47 LIFTRISQGEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHF-----DAEE 101 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 +L + H F H LG H D A +M Sbjct: 102 TWTNTSANYNLFLVAAHEFGHSLGLAHSSDPGA-LM 136 >d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxId: 10090]} Length = 162 Score = 27.5 bits (60), Expect = 0.56 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%) Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVM 151 L+ + H F H+LG H A +M Sbjct: 111 TDLLQVAAHEFGHVLGLQHTTAAKA-LM 137 >d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 157 Score = 26.8 bits (58), Expect = 0.96 Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%) Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 E +L + H H LG H D A +M Sbjct: 102 REYNLHRVAAHELGHSLGLSHSTDIGA-LM 130 >d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId: 9606]} Length = 161 Score = 26.8 bits (58), Expect = 1.1 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%) Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVM 151 L + H F H +G +H D A +M Sbjct: 107 YSLFLVAAHEFGHAMGLEHSQDPGA-LM 133 >d1lmla_ d.92.1.3 (A:) Leishmanolysin {Leishmania major [TaxId: 5664]} Length = 475 Score = 24.7 bits (53), Expect = 3.9 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%) Query: 83 VLSFPT---AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 V S P+ A + C D A +I I A + ++ + ++ H H LG Sbjct: 115 VASVPSEEGVLAWATTCQ--TFSDGHPAVGVINIPAANIASRYDQLVTRVVTHEMAHALG 172 Query: 140 YDH 142 + Sbjct: 173 FSG 175 >d1sa3a_ c.52.1.23 (A:) Restriction endonuclease MspI {Moraxella sp. [TaxId: 479]} Length = 262 Score = 24.2 bits (52), Expect = 5.8 Identities = 5/27 (18%), Positives = 14/27 (51%) Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIH 132 L + + ++ LGK +E +++ + Sbjct: 18 LPHTQHGVTSDRLGKLYEKYILDIFKD 44 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.141 0.408 Gapped Lambda K H 0.267 0.0510 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 632,257 Number of extensions: 27636 Number of successful extensions: 59 Number of sequences better than 10.0: 1 Number of HSP's gapped: 54 Number of HSP's successfully gapped: 18 Length of query: 171 Length of database: 2,407,596 Length adjustment: 79 Effective length of query: 92 Effective length of database: 1,322,926 Effective search space: 121709192 Effective search space used: 121709192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.6 bits)