HHsearch alignment for GI: 254780429 and conserved domain: PRK00039
>PRK00039 ruvC Holliday junction resolvase; Reviewed.
Probab=94.64 E-value=0.26 Score=28.78 Aligned_cols=100 Identities=14% Similarity=0.143 Sum_probs=58.8
Q ss_pred CCEEEEECCCHHHEEEEEECCCCEE--EEEEEEE--CCHHHHHHH---HHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHH
Q ss_conf 9278862168012789997798139--9999984--226899989---99999999760999878665430378543202
Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRI--LGSYFKN--LGRGHAEHL---MPAIDYALKDSRLEVSQVDRVVTALGPGSFTG 73 (206)
Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~--~~~~~~~--~~r~hs~~L---~~~i~~lL~~~~~~~~~id~iav~~GPGSFTG 73 (206)
T Consensus 2 MrILGIDPGl~~tG~gvie~~~~~~~~i~~G~I~t~~~~~~~~RL~~I~~~l~~li~~~~P~~~AiE~~F~~kN~~tai~ 81 (169)
T PRK00039 2 MRILGIDPGLRRTGYGVIEVEGRKLSYVASGVIRTTSDDDLPERLKQIFDGLSEVIDQYQPDEAAIEQVFVNKNPQSTLK 81 (169)
T ss_pred CEEEEECCCCCCEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCHHHHHH
T ss_conf 58999883668608999997699689999889957999998999999999999999965996564537887336889999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 466899999999732687110383899
Q gi|254780429|r 74 VRVSIAVARGISLVLKQPALGVGNLEV 100 (206)
Q Consensus 74 lRigia~akgLa~~~~~pv~gvssle~ 100 (206)
T Consensus 82 lgqARGvillaa~~~~i~v~eysP~~V 108 (169)
T PRK00039 82 LGQARGVAILAAARRGLPVAEYTPLQV 108 (169)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCHH
T ss_conf 999999999999983897588870744