RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780429|ref|YP_003064842.1| hypothetical protein
CLIBASIA_01570 [Candidatus Liberibacter asiaticus str. psy62]
(206 letters)
>2gel_A Putative GRAM negative resuscitation promoting factor;
YEAZ, RPF, actin-like-fold, glycoprotease, chaperone;
2.05A {Salmonella typhimurium LT2} PDB: 2gem_A 1okj_A
(A:1-93,A:190-231)
Length = 135
Score = 93.7 bits (233), Expect = 2e-20
Identities = 34/95 (35%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Query: 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVD 60
M +LA+DT CSVA++++ G I ++F+ R H + ++P + L S ++++D
Sbjct: 1 MRILAIDTATEACSVALWNN--GTIN-AHFELCPREHTQRILPMVQEILAASGASLNEID 57
Query: 61 RVVTALGPGSFTGVRVSIAVARGISLVLKQPALGV 95
+ GPGSFTGVR+ I +A+G++L P +GV
Sbjct: 58 ALAFGRGPGSFTGVRIGIGIAQGLALGANLPMIGV 92
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase,
structural genomics, joint center for structural
genomics, JCSG; 2.50A {Thermotoga maritima MSB8}
(A:1-104,A:174-218)
Length = 149
Score = 91.1 bits (226), Expect = 1e-19
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 3 VLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRV 62
VLALDT+ + + G L + HAE L + L + L+V +D V
Sbjct: 15 VLALDTSQ-RIRIGLRK---GEDLFEISYTGEKKHAEILPVVVKKLLDELDLKVKDLDVV 70
Query: 63 VTALGPGSFTGVRVSIAVARGISLVLKQPALGV 95
+GPG TG+RV IA G+ P +
Sbjct: 71 GVGIGPGGLTGLRVGIATVVGLVSPYDIPVAPL 103
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein
kinase; endopeptidase activity, protein kinase activity;
HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB:
3enh_A* 2vwb_A* (A:1-125,A:287-326)
Length = 165
Score = 83.1 bits (205), Expect = 3e-17
Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 13/120 (10%)
Query: 1 MIVLALDTTGADCSVAIYDSHAGRILGS-----------YFKNLGRGHAEHLMPAIDYAL 49
MI L L+ T V I S + + HAE I A
Sbjct: 6 MICLGLEGTAEKTGVGIVTSDGEVLFNKTIMYKPPKQGINPREAADHHAETFPKLIKEAF 65
Query: 50 KDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDSH 109
+ +++D + + GPG +RV+ VAR +SL LK+P +GV + +
Sbjct: 66 EVVDK--NEIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEIGKLTT 123
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn
dependent nucleotide phosphatase, metalloprotease,
hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus
abyssi} PDB: 2ivo_A 2ivp_A* (A:1-118,A:283-330)
Length = 166
Score = 81.2 bits (200), Expect = 8e-17
Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 10/116 (8%)
Query: 1 MIVLALDTTGADCSVAIYD----------SHAGRILGSYFKNLGRGHAEHLMPAIDYALK 50
M+ L ++ T + I + G + K HA + P + AL
Sbjct: 1 MLALGIEGTAHTLGIGIVSEDKVLANVFDTLTTEKGGIHPKEAAEHHARLMKPLLRKALS 60
Query: 51 DSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHL 106
++ + + +D + + GPG +RV AR +++ ++P +GV +
Sbjct: 61 EAGVSLDDIDVIAFSQGPGLGPALRVVATAARALAVKYRKPIVGVNHCIAHVEITK 116
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase,
metal-binding, metalloprotease, protease, zinc, keops
complex, ATPase, metal ION binding; 3.02A {Thermoplasma
acidophilum} (A:1-126,A:288-334)
Length = 173
Score = 78.1 bits (192), Expect = 9e-16
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 14/121 (11%)
Query: 1 MIVLALDTTGADCSVAIYDSHAGRILGS------------YFKNLGRGHAEHLMPAIDYA 48
MIVL L+ T S I D RIL + H+E + I A
Sbjct: 6 MIVLGLEGTAHTISCGIIDE--SRILAMESSMYRPKTGGIRPLDAAVHHSEVIDTVISRA 63
Query: 49 LKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDS 108
L+ +++ + +D + ++GPG +RV+ AR IS++ +P +GV +
Sbjct: 64 LEKAKISIHDIDLIGFSMGPGLAPSLRVTATAARTISVLTGKPIIGVNHPLGHIEIGRRV 123
Query: 109 H 109
Sbjct: 124 T 124
>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding
channel, hydrolase; 2.20A {Rattus norvegicus} PDB:
1i1i_P (A:1-117)
Length = 117
Score = 27.4 bits (61), Expect = 1.5
Identities = 2/22 (9%), Positives = 7/22 (31%)
Query: 38 AEHLMPAIDYALKDSRLEVSQV 59
E + + + ++ V
Sbjct: 31 PEQIKTRTEQLIAQTKQVYDTV 52
>2pm9_A Protein WEB1, protein transport protein SEC31; beta
propeller; 3.30A {Saccharomyces cerevisiae} (A:15-211)
Length = 197
Score = 27.2 bits (58), Expect = 1.6
Identities = 4/35 (11%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 6 LDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEH 40
+ G+ +I+D A + + + +
Sbjct: 167 FASAGSSNFASIWDLKAKKEVIHL-----SYTSPN 196
>1npe_A Nidogen, entactin; glycoprotein, basement membrane,
beta-propeller, EGF-like, structural protein; 2.30A
{Mus musculus} (A:)
Length = 267
Score = 26.9 bits (57), Expect = 2.0
Identities = 1/30 (3%), Positives = 4/30 (13%)
Query: 8 TTGADCSVAIYDSHAGRILGSYFKNLGRGH 37
+ + + K
Sbjct: 5 LFAQTGKIERLPLERNTMKKTEAKAFLHIP 34
>2o36_A ThiMet oligopeptidase; thermolysin-like domain,
substrate-binding channel, hydrolase; 1.95A {Homo
sapiens} PDB: 1s4b_P (A:1-117)
Length = 117
Score = 26.7 bits (59), Expect = 2.7
Identities = 3/22 (13%), Positives = 9/22 (40%)
Query: 38 AEHLMPAIDYALKDSRLEVSQV 59
A+ + ++ ++ QV
Sbjct: 15 AQQIEERTRELIEQTKRVYDQV 36
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide- binding,
phosphoprotein, polymorphism; HET: ADP; 1.30A {Homo
sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A*
1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3fzh_A* 3fzf_A*
3fzk_A* 3fzl_A* 3fzm_A* 1ngh_A* 1ngd_A* 1ngf_A* 1bup_A*
1nga_A* ... (A:209-250,A:335-362)
Length = 70
Score = 26.4 bits (59), Expect = 2.9
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 8 TTGADCSVAIYDSHAG-------RILGSYFKNLGRGHAEHL-MPAIDYALKDSRLEVSQV 59
G + +V I+D G I F+ HL + ++ AL+D++L+ Q+
Sbjct: 1 CAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGLEPVEKALRDAKLDKGQI 60
Query: 60 DRVV 63
+V
Sbjct: 61 QEIV 64
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
(A:1-74,A:255-284,A:436-494)
Length = 163
Score = 26.3 bits (58), Expect = 3.2
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 3 VLALD--TTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVD 60
V +D T C V + D+ G ++ A +++ + +D
Sbjct: 7 VAGVDTSTQS--CKVRVTDAETGELVRFGQAKHP-NGTSVDPSYWWSAFQEAAEQAGGLD 63
Query: 61 RVVTALGPGSFTGV 74
V AL G
Sbjct: 64 DVS-ALAVGGQQPA 76
>1yem_A Hypothetical protein; structural genomics, southeast
collaboratory for structural genomics, secsg, protein
structure initiative, PSI; 2.30A {Pyrococcus furiosus}
(A:)
Length = 179
Score = 26.2 bits (57), Expect = 3.5
Identities = 9/70 (12%), Positives = 18/70 (25%)
Query: 122 HQKVCCQKFSLDGVSCSDPVLLNYEQTRSEVDNFEGEIVGSGLSAIRGIENDIDHLPMDV 181
+ F + + EV+ EG + I + +V
Sbjct: 92 VEVFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIGDFVDIEVISDSPEEAKEKIWEV 151
Query: 182 LSRLGITKSS 191
LG+ +
Sbjct: 152 AKMLGLKEED 161
>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer,
X-RAY diffraction, structural genomics, NPPSFA; 1.65A
{Pyrococcus horikoshii} (A:)
Length = 165
Score = 25.8 bits (56), Expect = 3.9
Identities = 11/72 (15%), Positives = 21/72 (29%)
Query: 120 LFHQKVCCQKFSLDGVSCSDPVLLNYEQTRSEVDNFEGEIVGSGLSAIRGIENDIDHLPM 179
+ F + GV + E++ E + I + +
Sbjct: 82 GAIELFKRLGFKVQGVVKKRRWIYKLNNVTFELNRVEKAGDFLDIEVITSNPEEGKKIIW 141
Query: 180 DVLSRLGITKSS 191
DV RLG+ +
Sbjct: 142 DVARRLGLKEED 153
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural
genomics, PSI, protein structure initiative; 2.10A
{Pseudomonas aeruginosa} (A:226-497)
Length = 272
Score = 25.8 bits (56), Expect = 4.3
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 58 QVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGV 95
VD +VT G G+ AR I P+
Sbjct: 197 DVDILVTEQGLADLRGLAP-RERARVIIENCVHPSYQA 233
>1y79_1 Peptidyl-dipeptidase DCP; hinge bending, carboxypeptidase,
neurolysin, ACE, hydrolase; HET: TRP; 2.00A
{Escherichia coli} (1:1-182)
Length = 182
Score = 25.6 bits (56), Expect = 4.4
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 38 AEHLMPAIDYALKDSRLEVSQV 59
H PA D ++ R E++ +
Sbjct: 24 NHHYRPAFDEGMQQKRAEIAAI 45
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide
binding, protein folding, acetylation, ATP-binding,
cell inner membrane; NMR {Escherichia coli}
(A:183-227,A:313-363)
Length = 96
Score = 25.5 bits (56), Expect = 5.0
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 39 EHLMPAIDYALKDSRLEVSQVDRVVTALGP 68
+ + AL+D+ L VS +D V+ G
Sbjct: 47 NRSIEPLKVALQDAGLSVSDIDDVILVGGQ 76
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar
kinase, crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} (A:1-96,A:187-278,A:474-509)
Length = 224
Score = 25.8 bits (56), Expect = 5.2
Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 4/55 (7%)
Query: 3 VLALD--TTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLE 55
+ +D T + D G+ L + G + +P + L
Sbjct: 7 TIGVDYGTES--GRAVLIDLSNGQELADHVTPYRHGVIDQYLPNTNIKLGHEWAL 59
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase,
domain rearrangement; HET: ADP; 2.37A {Geobacillus
kaustophilus HTA426} (A:157-197,A:283-314)
Length = 73
Score = 25.2 bits (56), Expect = 6.3
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 32 NLGRGHAEHLMPAIDYALKDSRLEVSQVDRVV 63
+LG M + AL+D+ L + +D+V+
Sbjct: 39 HLGER----TMGPVRQALQDAGLTPADIDKVI 66
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} (D:183-227,D:312-363)
Length = 97
Score = 24.7 bits (54), Expect = 9.0
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 39 EHLMPAIDYALKDSRLEVSQVDRVVTALGP 68
+ + AL+D+ L VS +D V+ G
Sbjct: 48 NRSIELLKVALQDAGLSVSDIDDVILVGGQ 77
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.139 0.408
Gapped
Lambda K H
0.267 0.0549 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,515,141
Number of extensions: 63773
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 22
Length of query: 206
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 122
Effective length of database: 2,116,429
Effective search space: 258204338
Effective search space used: 258204338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.2 bits)