RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780429|ref|YP_003064842.1| hypothetical protein CLIBASIA_01570 [Candidatus Liberibacter asiaticus str. psy62] (206 letters) >2gel_A Putative GRAM negative resuscitation promoting factor; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium LT2} PDB: 2gem_A 1okj_A (A:1-93,A:190-231) Length = 135 Score = 93.7 bits (233), Expect = 2e-20 Identities = 34/95 (35%), Positives = 58/95 (61%), Gaps = 3/95 (3%) Query: 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVD 60 M +LA+DT CSVA++++ G I ++F+ R H + ++P + L S ++++D Sbjct: 1 MRILAIDTATEACSVALWNN--GTIN-AHFELCPREHTQRILPMVQEILAASGASLNEID 57 Query: 61 RVVTALGPGSFTGVRVSIAVARGISLVLKQPALGV 95 + GPGSFTGVR+ I +A+G++L P +GV Sbjct: 58 ALAFGRGPGSFTGVRIGIGIAQGLALGANLPMIGV 92 >2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermotoga maritima MSB8} (A:1-104,A:174-218) Length = 149 Score = 91.1 bits (226), Expect = 1e-19 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 4/93 (4%) Query: 3 VLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRV 62 VLALDT+ + + G L + HAE L + L + L+V +D V Sbjct: 15 VLALDTSQ-RIRIGLRK---GEDLFEISYTGEKKHAEILPVVVKKLLDELDLKVKDLDVV 70 Query: 63 VTALGPGSFTGVRVSIAVARGISLVLKQPALGV 95 +GPG TG+RV IA G+ P + Sbjct: 71 GVGIGPGGLTGLRVGIATVVGLVSPYDIPVAPL 103 >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* (A:1-125,A:287-326) Length = 165 Score = 83.1 bits (205), Expect = 3e-17 Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 13/120 (10%) Query: 1 MIVLALDTTGADCSVAIYDSHAGRILGS-----------YFKNLGRGHAEHLMPAIDYAL 49 MI L L+ T V I S + + HAE I A Sbjct: 6 MICLGLEGTAEKTGVGIVTSDGEVLFNKTIMYKPPKQGINPREAADHHAETFPKLIKEAF 65 Query: 50 KDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDSH 109 + +++D + + GPG +RV+ VAR +SL LK+P +GV + + Sbjct: 66 EVVDK--NEIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEIGKLTT 123 >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* (A:1-118,A:283-330) Length = 166 Score = 81.2 bits (200), Expect = 8e-17 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 10/116 (8%) Query: 1 MIVLALDTTGADCSVAIYD----------SHAGRILGSYFKNLGRGHAEHLMPAIDYALK 50 M+ L ++ T + I + G + K HA + P + AL Sbjct: 1 MLALGIEGTAHTLGIGIVSEDKVLANVFDTLTTEKGGIHPKEAAEHHARLMKPLLRKALS 60 Query: 51 DSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHL 106 ++ + + +D + + GPG +RV AR +++ ++P +GV + Sbjct: 61 EAGVSLDDIDVIAFSQGPGLGPALRVVATAARALAVKYRKPIVGVNHCIAHVEITK 116 >3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} (A:1-126,A:288-334) Length = 173 Score = 78.1 bits (192), Expect = 9e-16 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 14/121 (11%) Query: 1 MIVLALDTTGADCSVAIYDSHAGRILGS------------YFKNLGRGHAEHLMPAIDYA 48 MIVL L+ T S I D RIL + H+E + I A Sbjct: 6 MIVLGLEGTAHTISCGIIDE--SRILAMESSMYRPKTGGIRPLDAAVHHSEVIDTVISRA 63 Query: 49 LKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDS 108 L+ +++ + +D + ++GPG +RV+ AR IS++ +P +GV + Sbjct: 64 LEKAKISIHDIDLIGFSMGPGLAPSLRVTATAARTISVLTGKPIIGVNHPLGHIEIGRRV 123 Query: 109 H 109 Sbjct: 124 T 124 >2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel, hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P (A:1-117) Length = 117 Score = 27.4 bits (61), Expect = 1.5 Identities = 2/22 (9%), Positives = 7/22 (31%) Query: 38 AEHLMPAIDYALKDSRLEVSQV 59 E + + + ++ V Sbjct: 31 PEQIKTRTEQLIAQTKQVYDTV 52 >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} (A:15-211) Length = 197 Score = 27.2 bits (58), Expect = 1.6 Identities = 4/35 (11%), Positives = 12/35 (34%), Gaps = 5/35 (14%) Query: 6 LDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEH 40 + G+ +I+D A + + + + Sbjct: 167 FASAGSSNFASIWDLKAKKEVIHL-----SYTSPN 196 >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} (A:) Length = 267 Score = 26.9 bits (57), Expect = 2.0 Identities = 1/30 (3%), Positives = 4/30 (13%) Query: 8 TTGADCSVAIYDSHAGRILGSYFKNLGRGH 37 + + + K Sbjct: 5 LFAQTGKIERLPLERNTMKKTEAKAFLHIP 34 >2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P (A:1-117) Length = 117 Score = 26.7 bits (59), Expect = 2.7 Identities = 3/22 (13%), Positives = 9/22 (40%) Query: 38 AEHLMPAIDYALKDSRLEVSQV 59 A+ + ++ ++ QV Sbjct: 15 AQQIEERTRELIEQTKRVYDQV 36 >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide- binding, phosphoprotein, polymorphism; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3fzh_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 1ngh_A* 1ngd_A* 1ngf_A* 1bup_A* 1nga_A* ... (A:209-250,A:335-362) Length = 70 Score = 26.4 bits (59), Expect = 2.9 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 8/64 (12%) Query: 8 TTGADCSVAIYDSHAG-------RILGSYFKNLGRGHAEHL-MPAIDYALKDSRLEVSQV 59 G + +V I+D G I F+ HL + ++ AL+D++L+ Q+ Sbjct: 1 CAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGLEPVEKALRDAKLDKGQI 60 Query: 60 DRVV 63 +V Sbjct: 61 QEIV 64 >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} (A:1-74,A:255-284,A:436-494) Length = 163 Score = 26.3 bits (58), Expect = 3.2 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 6/74 (8%) Query: 3 VLALD--TTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVD 60 V +D T C V + D+ G ++ A +++ + +D Sbjct: 7 VAGVDTSTQS--CKVRVTDAETGELVRFGQAKHP-NGTSVDPSYWWSAFQEAAEQAGGLD 63 Query: 61 RVVTALGPGSFTGV 74 V AL G Sbjct: 64 DVS-ALAVGGQQPA 76 >1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} (A:) Length = 179 Score = 26.2 bits (57), Expect = 3.5 Identities = 9/70 (12%), Positives = 18/70 (25%) Query: 122 HQKVCCQKFSLDGVSCSDPVLLNYEQTRSEVDNFEGEIVGSGLSAIRGIENDIDHLPMDV 181 + F + + EV+ EG + I + +V Sbjct: 92 VEVFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIGDFVDIEVISDSPEEAKEKIWEV 151 Query: 182 LSRLGITKSS 191 LG+ + Sbjct: 152 AKMLGLKEED 161 >2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii} (A:) Length = 165 Score = 25.8 bits (56), Expect = 3.9 Identities = 11/72 (15%), Positives = 21/72 (29%) Query: 120 LFHQKVCCQKFSLDGVSCSDPVLLNYEQTRSEVDNFEGEIVGSGLSAIRGIENDIDHLPM 179 + F + GV + E++ E + I + + Sbjct: 82 GAIELFKRLGFKVQGVVKKRRWIYKLNNVTFELNRVEKAGDFLDIEVITSNPEEGKKIIW 141 Query: 180 DVLSRLGITKSS 191 DV RLG+ + Sbjct: 142 DVARRLGLKEED 153 >2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} (A:226-497) Length = 272 Score = 25.8 bits (56), Expect = 4.3 Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 1/38 (2%) Query: 58 QVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGV 95 VD +VT G G+ AR I P+ Sbjct: 197 DVDILVTEQGLADLRGLAP-RERARVIIENCVHPSYQA 233 >1y79_1 Peptidyl-dipeptidase DCP; hinge bending, carboxypeptidase, neurolysin, ACE, hydrolase; HET: TRP; 2.00A {Escherichia coli} (1:1-182) Length = 182 Score = 25.6 bits (56), Expect = 4.4 Identities = 6/22 (27%), Positives = 11/22 (50%) Query: 38 AEHLMPAIDYALKDSRLEVSQV 59 H PA D ++ R E++ + Sbjct: 24 NHHYRPAFDEGMQQKRAEIAAI 45 >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} (A:183-227,A:313-363) Length = 96 Score = 25.5 bits (56), Expect = 5.0 Identities = 9/30 (30%), Positives = 15/30 (50%) Query: 39 EHLMPAIDYALKDSRLEVSQVDRVVTALGP 68 + + AL+D+ L VS +D V+ G Sbjct: 47 NRSIEPLKVALQDAGLSVSDIDDVILVGGQ 76 >3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} (A:1-96,A:187-278,A:474-509) Length = 224 Score = 25.8 bits (56), Expect = 5.2 Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 4/55 (7%) Query: 3 VLALD--TTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLE 55 + +D T + D G+ L + G + +P + L Sbjct: 7 TIGVDYGTES--GRAVLIDLSNGQELADHVTPYRHGVIDQYLPNTNIKLGHEWAL 59 >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} (A:157-197,A:283-314) Length = 73 Score = 25.2 bits (56), Expect = 6.3 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 4/32 (12%) Query: 32 NLGRGHAEHLMPAIDYALKDSRLEVSQVDRVV 63 +LG M + AL+D+ L + +D+V+ Sbjct: 39 HLGER----TMGPVRQALQDAGLTPADIDKVI 66 >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} (D:183-227,D:312-363) Length = 97 Score = 24.7 bits (54), Expect = 9.0 Identities = 9/30 (30%), Positives = 15/30 (50%) Query: 39 EHLMPAIDYALKDSRLEVSQVDRVVTALGP 68 + + AL+D+ L VS +D V+ G Sbjct: 48 NRSIELLKVALQDAGLSVSDIDDVILVGGQ 77 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.322 0.139 0.408 Gapped Lambda K H 0.267 0.0549 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,515,141 Number of extensions: 63773 Number of successful extensions: 147 Number of sequences better than 10.0: 1 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 22 Length of query: 206 Length of database: 4,956,049 Length adjustment: 84 Effective length of query: 122 Effective length of database: 2,116,429 Effective search space: 258204338 Effective search space used: 258204338 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 52 (24.2 bits)