RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780429|ref|YP_003064842.1| hypothetical protein
CLIBASIA_01570 [Candidatus Liberibacter asiaticus str. psy62]
         (206 letters)



>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 103

 Score = 92.6 bits (230), Expect = 2e-20
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 4/104 (3%)

Query: 1   MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVD 60
           M VLALDT+     + +     G  L        + HAE L   +   L +  L+V  +D
Sbjct: 1   MNVLALDTSQR-IRIGLRK---GEDLFEISYTGEKKHAEILPVVVKKLLDELDLKVKDLD 56

Query: 61  RVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARA 104
            V   +GPG  TG+RV IA   G+      P   + + E+ A++
Sbjct: 57  VVGVGIGPGGLTGLRVGIATVVGLVSPYDIPVAPLNSFEMTAKS 100


>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia
           coli [TaxId: 562]}
          Length = 106

 Score = 74.2 bits (182), Expect = 8e-15
 Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 3/107 (2%)

Query: 3   VLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRV 62
           +LA+DT    CSVA+++   G +  ++F+   R H + ++P +   L  S   ++ ++ +
Sbjct: 2   ILAIDTATEACSVALWND--GTVN-AHFELCPREHTQRILPMVQDILTTSGTSLTDINAL 58

Query: 63  VTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDSH 109
               GPGSFTGVR+ I +A+G++L  + P +GV  L  +A+     +
Sbjct: 59  AYGRGPGSFTGVRIGIGIAQGLALGAELPMIGVSTLMTMAQGAWRKN 105


>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 876

 Score = 27.7 bits (61), Expect = 0.77
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 91  PALGVGNLEVLARAHLDS 108
             LG G L  LA   +DS
Sbjct: 156 AGLGNGGLGRLAACFVDS 173


>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 824

 Score = 26.9 bits (59), Expect = 1.4
 Identities = 9/18 (50%), Positives = 9/18 (50%)

Query: 91  PALGVGNLEVLARAHLDS 108
             LG G L  LA   LDS
Sbjct: 118 AGLGNGGLGRLAACFLDS 135


>d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga
           maritima [TaxId: 2336]}
          Length = 391

 Score = 26.5 bits (57), Expect = 1.8
 Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 8/41 (19%)

Query: 161 GSGLSAIRGIENDIDHLPMDVLSRLGITK---SSPFPSPIY 198
             G+   RG++N + +     L  LGI        F S  +
Sbjct: 16  LDGVGDFRGLKNAVSY-----LKELGIDFVWLMPVFSSISF 51


>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
           {Escherichia coli [TaxId: 562]}
          Length = 796

 Score = 26.2 bits (57), Expect = 2.1
 Identities = 11/18 (61%), Positives = 11/18 (61%)

Query: 91  PALGVGNLEVLARAHLDS 108
           PALG G L  LA   LDS
Sbjct: 108 PALGNGGLGRLAACFLDS 125


>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 319

 Score = 25.7 bits (55), Expect = 2.7
 Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 16/120 (13%)

Query: 41  LMPAIDYALKDSRLEVSQVDRVVTALGPGSFTG---VRVSIAVARGISLVLKQPALGVGN 97
           L PA+D  +     +V+++ R+          G   + VSIA+++          LGV  
Sbjct: 7   LNPALDREIFIEDFQVNRLYRINDLSKTQMSPGGKGINVSIALSK----------LGV-- 54

Query: 98  LEVLARAHLDSHVGRPIMVLVSLFHQKVCCQKFSLDGVSCSDPVLLNYEQTRSEVDNFEG 157
              +A   +  ++G+ ++  +    + +      ++G +  +  +++ +       NF G
Sbjct: 55  -PSVATGFVGGYMGKILVEELRKISKLITTNFVYVEGETRENIEIIDEKNKTITAINFPG 113


>d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
          oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 654

 Score = 25.9 bits (56), Expect = 3.0
 Identities = 3/22 (13%), Positives = 9/22 (40%)

Query: 38 AEHLMPAIDYALKDSRLEVSQV 59
          A+ +       ++ ++    QV
Sbjct: 7  AQQIEERTRELIEQTKRVYDQV 28


>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
          oligopeptidase) {Rat (Rattus norvegicus) [TaxId:
          10116]}
          Length = 665

 Score = 25.5 bits (55), Expect = 3.1
 Identities = 2/22 (9%), Positives = 7/22 (31%)

Query: 38 AEHLMPAIDYALKDSRLEVSQV 59
           E +    +  +  ++     V
Sbjct: 18 PEQIKTRTEQLIAQTKQVYDTV 39


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 736,687
Number of extensions: 32540
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 9
Length of query: 206
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,295,466
Effective search space: 161933250
Effective search space used: 161933250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)