HHsearch alignment for GI: 254780430 and conserved domain: pfam01106
>pfam01106 NifU NifU-like domain. This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.
Probab=99.89 E-value=1.9e-23 Score=167.27 Aligned_cols=68 Identities=40% Similarity=0.660 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 999999987777875289759996433479999636646666689999999999999978970035539
Q gi|254780430|r 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 (189)
Q Consensus 121 i~~~l~~~IrP~l~~dGG~i~~~~~~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~vpev~~V~~v 189 (189)
T Consensus 1 I~~~le~-IRP~l~~dGGdvelv~v~~~~v~v~l~GaC~gC~~s~~Tlk~~Ie~~L~~~vpev~~Vv~V 68 (68)
T pfam01106 1 IEEVIDE-IRPMLQRDGGDIELVDVDGDIVKVRLQGACGGCMSSTMTLKGGIERKLRERLGESLRVIPV 68 (68)
T ss_pred CHHHHHH-HCHHHHHCCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 9779987-5648885599289999869999999812898981089999999999999878997669879