Query gi|254780430|ref|YP_003064843.1| nitrogen fixation protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 189
No_of_seqs 141 out of 1544
Neff 5.9
Searched_HMMs 23785
Date Mon May 30 11:24:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780430.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1veh_A NIFU-like protein hirip 99.9 1.8E-26 7.5E-31 184.8 8.9 80 110-189 7-86 (92)
2 1xhj_A Nitrogen fixation prote 99.9 4E-25 1.7E-29 176.4 9.3 76 113-189 4-79 (88)
3 2k1h_A Uncharacterized protein 99.9 1.4E-24 6E-29 173.0 6.9 83 1-84 2-85 (94)
4 2z51_A NIFU-like protein 2, ch 99.9 6.2E-24 2.6E-28 169.0 8.7 72 117-189 5-76 (154)
5 1pqx_A Conserved hypothetical 99.9 2.4E-24 1E-28 171.6 5.9 80 1-81 2-82 (91)
6 1th5_A NIFU1; iron-sulfur clus 99.8 1.1E-19 4.7E-24 142.4 5.1 68 117-189 5-73 (74)
7 2z51_A NIFU-like protein 2, ch 98.8 5.1E-08 2.1E-12 69.7 10.3 121 50-188 26-153 (154)
8 3lno_A Putative uncharacterize 94.6 0.18 7.5E-06 28.9 7.9 71 116-187 8-82 (108)
9 3cq1_A Putative uncharacterize 89.9 0.47 2E-05 26.3 5.1 71 115-187 5-78 (103)
10 1uwd_A Hypothetical protein TM 83.7 1.2 5.1E-05 23.8 4.3 67 119-187 9-79 (103)
11 1sq1_A Chorismate synthase; st 60.8 3.7 0.00016 20.7 2.1 28 38-65 227-254 (370)
12 1q1l_A Chorismate synthase; be 56.3 4.6 0.00019 20.2 1.9 28 38-65 253-280 (401)
13 1r53_A Chorismate synthase; tw 54.7 3.6 0.00015 20.8 1.2 27 38-64 239-265 (382)
14 1xzo_A BSSCO, hypothetical pro 53.9 9.2 0.00039 18.3 3.2 12 146-157 144-155 (174)
15 2o11_A Chorismate synthase; sh 53.0 6.4 0.00027 19.3 2.2 22 40-61 247-268 (407)
16 1um0_A Chorismate synthase; be 50.1 6.6 0.00028 19.2 1.9 14 39-52 136-149 (365)
17 1qxo_A Chorismate synthase; be 48.2 7.4 0.00031 18.9 1.9 27 38-64 240-266 (388)
18 2pih_A Protein YMCA; regulate 46.4 15 0.00064 16.9 3.3 46 113-165 97-142 (151)
19 2k02_A Ferrous iron transport 46.3 4.2 0.00018 20.4 0.4 35 120-164 32-67 (87)
20 2b7k_A SCO1 protein; metalloch 45.6 16 0.00068 16.7 3.8 19 134-152 142-160 (200)
21 1xn7_A Hypothetical protein YH 43.8 4.7 0.0002 20.1 0.4 24 137-164 43-67 (78)
22 2p31_A CL683, glutathione pero 42.9 15 0.00063 16.9 2.9 30 142-177 152-181 (181)
23 3cyn_A Probable glutathione pe 40.9 19 0.0008 16.3 3.8 35 142-182 150-184 (189)
24 3lwa_A Secreted thiol-disulfid 40.5 6.4 0.00027 19.2 0.7 28 146-178 155-182 (183)
25 3cmi_A Peroxiredoxin HYR1; thi 38.9 14 0.0006 17.1 2.2 32 141-178 138-169 (171)
26 2v1m_A Glutathione peroxidase; 36.9 22 0.00093 15.9 3.2 32 141-178 137-168 (169)
27 2ofg_X Zinc-transporting ATPas 31.1 27 0.0012 15.3 3.7 39 40-78 25-67 (111)
28 2vup_A Glutathione peroxidase- 30.9 23 0.00095 15.8 2.2 31 142-178 156-186 (190)
29 2cvb_A Probable thiol-disulfid 30.8 28 0.0012 15.3 3.2 20 165-184 147-166 (188)
30 3hdc_A Thioredoxin family prot 29.4 21 0.00088 16.1 1.8 12 146-157 124-135 (158)
31 1y8o_A [pyruvate dehydrogenase 29.3 29 0.0012 15.1 3.6 28 129-156 344-373 (419)
32 3na7_A HP0958; flagellar bioge 27.3 17 0.00071 16.6 1.0 16 149-165 193-208 (256)
33 3ha9_A Uncharacterized thiored 27.0 29 0.0012 15.2 2.2 12 141-152 135-146 (165)
34 1gkz_A [3-methyl-2-oxobutanoat 26.8 33 0.0014 14.8 4.1 31 129-159 343-375 (388)
35 2obi_A PHGPX, GPX-4, phospholi 26.3 33 0.0014 14.8 3.3 14 142-156 155-168 (183)
36 3me7_A Putative uncharacterize 26.0 17 0.00071 16.6 0.8 27 146-176 135-161 (170)
37 3eur_A Uncharacterized protein 25.8 34 0.0014 14.7 2.9 13 46-58 63-75 (142)
38 2v5j_A 2,4-dihydroxyhept-2-ENE 25.0 22 0.0009 16.0 1.2 52 40-91 180-234 (287)
39 1kdx_A CBP; complex (transcrip 24.7 20 0.00086 16.1 1.1 19 69-87 5-24 (81)
40 2v50_A Multidrug resistance pr 24.2 36 0.0015 14.5 7.5 114 38-154 62-188 (1052)
41 1osd_A MERP, hypothetical prot 23.1 38 0.0016 14.4 4.0 26 40-65 20-47 (72)
42 1xg8_A Hypothetical protein SA 22.4 40 0.0017 14.3 2.9 10 172-181 35-44 (111)
43 2c42_A Pyruvate-ferredoxin oxi 21.3 13 0.00053 17.4 -0.6 50 117-174 238-288 (1231)
44 3ewl_A Uncharacterized conserv 21.1 39 0.0017 14.3 1.9 13 46-58 59-71 (142)
45 1yjr_A Copper-transporting ATP 21.0 42 0.0018 14.1 2.3 27 40-66 21-49 (75)
46 2k6v_A Putative cytochrome C o 20.7 18 0.00075 16.5 0.1 20 135-156 136-155 (172)
47 2btz_A Pyruvate dehydrogenase 20.5 43 0.0018 14.1 3.5 27 129-155 320-348 (394)
48 3e8p_A Uncharacterized protein 20.5 43 0.0018 14.1 3.9 23 38-64 30-52 (164)
No 1
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=99.93 E-value=1.8e-26 Score=184.84 Aligned_cols=80 Identities=48% Similarity=0.932 Sum_probs=76.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 45440268899999999987777875289759996433479999636646666689999999999999978970035539
Q gi|254780430|r 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 (189)
Q Consensus 110 ~~~~~~~~~~~i~~~l~~~IrP~l~~dGG~i~~~~~~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~vpev~~V~~v 189 (189)
..++|++++++|+++|+++|||+|++|||||+|++|++|+|+|+|+|||+|||+|++||+++||++||+++|||+.|++|
T Consensus 7 ~~~~d~e~~~~I~~~L~~~IrP~l~~dGGdv~~v~~~~g~V~v~l~GaC~gC~~s~~Tl~~~Ie~~L~~~vpev~~V~~v 86 (92)
T 1veh_A 7 GSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQV 86 (92)
T ss_dssp SCSSCCHHHHHHHHHHHHTTHHHHHHHSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHCCHHHHHCCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 89763899999999999751678996599369999518879999653578876189999999999999978995569982
No 2
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structure initiative, NESG, PSI; NMR {Staphylococcus epidermidis atcc 12228} SCOP: d.52.8.1
Probab=99.92 E-value=4e-25 Score=176.42 Aligned_cols=76 Identities=39% Similarity=0.742 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 40268899999999987777875289759996433479999636646666689999999999999978970035539
Q gi|254780430|r 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 (189)
Q Consensus 113 ~~~~~~~~i~~~l~~~IrP~l~~dGG~i~~~~~~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~vpev~~V~~v 189 (189)
++.++.++|+++|+ +|||+|++|||||+|+++++|+|+|+|+|||+|||||+.||++|||++|++++||++.|++|
T Consensus 4 e~~~l~~~I~~vLe-~IRP~L~~dGGdvelv~v~~g~V~V~l~GaC~gCp~s~~Tlk~~Ie~~L~~~vpev~~V~~V 79 (88)
T 1xhj_A 4 ENPTMFDQVAEVIE-RLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQV 79 (88)
T ss_dssp CCSCHHHHHHHHHH-HHHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred CCHHHHHHHHHHHH-HHHHHHHHCCCCEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 75789999999999-86689986799779996239999999865788986289999999999999878997789997
No 3
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Staphylococcus epidermidis atcc 12228}
Probab=99.90 E-value=1.4e-24 Score=172.97 Aligned_cols=83 Identities=24% Similarity=0.482 Sum_probs=75.5
Q ss_pred CEEECCCCCCHHHHHHHCCCEECCCCCEECCCHHHCCCCHHHHHHHHCCCCEEEEECCCEEEEEEC-CCCCHHHHHHHHH
Q ss_conf 910211488722435417975437886430696670134688987416881079980877998314-6682123489999
Q gi|254780430|r 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKD-QYDWEHLRPPVLG 79 (189)
Q Consensus 1 m~I~~e~TPNPn~lKFi~~~~i~~~g~~~f~~~~~a~~spLa~~Lf~i~GV~~Vfi~~nFITVtK~-~~eW~~i~p~I~~ 79 (189)
++|++|+|||||+|||++++.+..+|+.+|.+.++ ..+|||++||+++||++||++.|||||||+ +++|++|+|+|++
T Consensus 2 ~iI~ie~TPNPnalKFv~~~~l~~~~~~~~~~~~~-~~spLa~~LF~i~gV~~Vf~~~dFITVtK~~~~~W~~i~~~I~~ 80 (94)
T 2k1h_A 2 EIIAISETPNHNTMKVSLSEPRQDNSFTTYTAAQE-GQPEFINRLFEIEGVKSIFYVLDFISIDKEDNANWNELLPQIEN 80 (94)
T ss_dssp CCCCCBCCSSSSCEEEECCCCCTTCCCCEECCCCT-TSCHHHHHHHTSTTEEEEEEETTEEEEEECTTCCHHHHHHHHHH
T ss_pred CEEECCCCCCCCCEEEECCCEEECCCCEEECCCCC-CCCHHHHHHHCCCCCCEEEECCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 77864568895777884597263487145064000-14999999867888347997399899984899998999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780430|r 80 MIMEH 84 (189)
Q Consensus 80 ~I~~~ 84 (189)
++.+.
T Consensus 81 ~l~~~ 85 (94)
T 2k1h_A 81 TFAKS 85 (94)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 98550
No 4
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=99.90 E-value=6.2e-24 Score=168.97 Aligned_cols=72 Identities=29% Similarity=0.672 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 8899999999987777875289759996433479999636646666689999999999999978970035539
Q gi|254780430|r 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 (189)
Q Consensus 117 ~~~~i~~~l~~~IrP~l~~dGG~i~~~~~~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~vpev~~V~~v 189 (189)
..++|+.+||+ |||+|++||||++|+++++|+|+|+|+|||+|||||+.||++|||++||+++||++.|++|
T Consensus 5 t~e~Ve~vLde-IRP~L~~dGGdvelv~i~dg~V~v~l~GaC~gC~ss~~Tlk~gIe~~L~~~vpei~~V~~v 76 (154)
T 2z51_A 5 TEENVESVLDE-IRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEAL 76 (154)
T ss_dssp CHHHHHHHHHH-HHHHHHHTTEEEEEEEEETTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred CHHHHHHHHHH-HCHHHHHCCCEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 69999999998-5769885698179998239999999806888994489999999999999879981079973
No 5
>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A
Probab=99.90 E-value=2.4e-24 Score=171.56 Aligned_cols=80 Identities=23% Similarity=0.421 Sum_probs=73.5
Q ss_pred CEEECCCCCCHHHHHHHCCCEECCCCCEECCCHHHCCCCHHHHHHHHCCCCEEEEECCCEEEEEEC-CCCCHHHHHHHHH
Q ss_conf 910211488722435417975437886430696670134688987416881079980877998314-6682123489999
Q gi|254780430|r 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKD-QYDWEHLRPPVLG 79 (189)
Q Consensus 1 m~I~~e~TPNPn~lKFi~~~~i~~~g~~~f~~~~~a~~spLa~~Lf~i~GV~~Vfi~~nFITVtK~-~~eW~~i~p~I~~ 79 (189)
++|++|+|||||+|||++++.+..+|+.+|.+.+ +..+|||++||+++||++||+++|||||||+ +++|++|+|+|++
T Consensus 2 ~iI~ie~TPNPnalKFv~~~~l~~~~~~~f~~~~-~~~~pla~~Lf~i~gV~~Vf~~~nFITVtK~~~~~W~~l~~~I~e 80 (91)
T 1pqx_A 2 KIISISETPNHNTMKITLSESREGMTSDTYTKVD-DSQPAFINDILKVEGVKSIFHVMDFISVDKENDANWETVLPKVEA 80 (91)
T ss_dssp CCCBCCCCSCSSEEEEECSCCSSCCCCEEESSSC-SSCCHHHHHHHHSTTEEEEEEETTEEEEEECTTSCSTTTHHHHHH
T ss_pred CEEECCCCCCCCCEEEECCCCCCCCCCCCCCCHH-HHCCHHHHHHHCCCCEEEEEEECCEEEEEECCCCCHHHHHHHHHH
T ss_conf 6786236989216888369642578731117144-405999999866778538998488999983899998999999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780430|r 80 MI 81 (189)
Q Consensus 80 ~I 81 (189)
++
T Consensus 81 ~~ 82 (91)
T 1pqx_A 81 VF 82 (91)
T ss_dssp HT
T ss_pred HH
T ss_conf 98
No 6
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=99.78 E-value=1.1e-19 Score=142.42 Aligned_cols=68 Identities=22% Similarity=0.432 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HCCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 889999999998777787-5289759996433479999636646666689999999999999978970035539
Q gi|254780430|r 117 VVQRIKEVLDNRVRPAVA-RDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 (189)
Q Consensus 117 ~~~~i~~~l~~~IrP~l~-~dGG~i~~~~~~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~vpev~~V~~v 189 (189)
..++|+.+|+ +|||+|+ +||||++|+++++|+|+|+|+|||+||+ ||++|||++||+++|||+.|+.|
T Consensus 5 t~e~V~~vL~-eirP~L~a~dGGdvelv~i~~~~V~v~l~GaC~gC~----Tl~~~Ie~~L~~~iPei~~V~~v 73 (74)
T 1th5_A 5 NEENVEKVLN-EIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVR----TVRIAVSKKLREKIPSIQIVQLL 73 (74)
T ss_dssp SHHHHHHHHT-TTHHHHTTTTCCCCCCCEEETTEEEECCCSSSSSSS----SHHHHHHHHHHHHCTTCSEEEEC
T ss_pred CHHHHHHHHH-HHCCCHHHCCCCEEEEEEEECCEEEEEECCCCCCCH----HHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 8999999999-855223115897199999609999999737877626----69999999999979984089955
No 7
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=98.79 E-value=5.1e-08 Score=69.75 Aligned_cols=121 Identities=16% Similarity=0.215 Sum_probs=84.4
Q ss_pred CCEEEEECCCEEEEEEC------CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 81079980877998314------668212348999999999740143232321122222222233445440268899999
Q gi|254780430|r 50 GIASVYFGYDFITVGKD------QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKE 123 (189)
Q Consensus 50 GV~~Vfi~~nFITVtK~------~~eW~~i~p~I~~~I~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 123 (189)
.|+-+=+.++-+.|.=. ...=..++.-|...|++++..=..+.+ .... ...+....+.++.
T Consensus 26 dvelv~i~dg~V~v~l~GaC~gC~ss~~Tlk~gIe~~L~~~vpei~~V~~-----------v~~~--~~~~~~~~e~~~~ 92 (154)
T 2z51_A 26 NVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEA-----------LPDE--ETGLELNEENIEK 92 (154)
T ss_dssp EEEEEEEETTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEEE-----------CCSS--CCSCCSSHHHHHH
T ss_pred EEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE-----------CCCC--CCCCCCCHHHHHH
T ss_conf 17999823999999980688899448999999999999987998107997-----------3897--6665468899999
Q ss_pred HHHHHHHHHHHHCC-CCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 99998777787528-975999643347999963664666668999999999999997897003553
Q gi|254780430|r 124 VLDNRVRPAVARDG-GDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 (189)
Q Consensus 124 ~l~~~IrP~l~~dG-G~i~~~~~~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~vpev~~V~~ 188 (189)
.|++ +||++..+| |.++++++++++++++|.|.|++| .|++++|+..||+.+|.|..|+-
T Consensus 93 ~L~~-lrp~~~~~~gg~v~~v~v~~~~~~vr~~Gp~~~~----~~i~~~i~~~lkek~P~i~~v~~ 153 (154)
T 2z51_A 93 VLEE-IRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGV----MTVRVAVTQKLREKIPSIAAVQL 153 (154)
T ss_dssp HHHH-HGGGCCGGGCCEEEEEEEETTEEEEEEESGGGGC----HHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHH-HCCCCCCCCCCEEEEEEEECCEEEEEECCCCCHH----HHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9998-4786655789369999973887999965872002----45999999999974997448984
No 8
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis}
Probab=94.57 E-value=0.18 Score=28.95 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH---CCCCEEEEEEE-CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 68899999999987777875---28975999643-34799996366466666899999999999999789700355
Q gi|254780430|r 116 AVVQRIKEVLDNRVRPAVAR---DGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 (189)
Q Consensus 116 ~~~~~i~~~l~~~IrP~l~~---dGG~i~~~~~~-~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~vpev~~V~ 187 (189)
.+.++|.+.|.+=+.|-+.. |=|-|.=+.++ +|.|.|.|.=.+.+||.. ..+.+.|+..|+..+|.|..|.
T Consensus 8 ~~e~~I~~aL~~V~DPEl~v~IvdLGLV~~i~v~~~~~v~V~m~lT~~~CP~~-~~i~~~i~~~l~~~l~gv~~v~ 82 (108)
T 3lno_A 8 AFENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITMTMTSIGCPMA-GQIVSDVKKVLSTNVPEVNEIE 82 (108)
T ss_dssp HHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTTCCEEEEECCSCTTCTTH-HHHHHHHHHHHHHHCTTCCCEE
T ss_pred HHHHHHHHHHCCCCCCCCCCCEECCCCEEEEEECCCCEEEEEEECCCCCCCCH-HHHHHHHHHHHHHCCCCCCEEE
T ss_conf 99999999981777999997633168278888637965999995187899808-9999999999996499985499
No 9
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=89.94 E-value=0.47 Score=26.35 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---CCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 268899999999987777875---2897599964334799996366466666899999999999999789700355
Q gi|254780430|r 115 SAVVQRIKEVLDNRVRPAVAR---DGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 (189)
Q Consensus 115 ~~~~~~i~~~l~~~IrP~l~~---dGG~i~~~~~~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~vpev~~V~ 187 (189)
+.+.++|.+.|.+-+-|.+.. +=|-|.=+.+++|.|.|.|.=.+.+||... .+.+.++..|+ .+|.|.+|.
T Consensus 5 ~p~e~~v~~aL~~V~DPe~~~dIv~LGlV~~v~i~~~~V~v~l~lt~~~cp~~~-~i~~~i~~al~-~~~gv~~V~ 78 (103)
T 3cq1_A 5 NPLEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHD-SLGEAVRQALS-RLPGVEEVE 78 (103)
T ss_dssp SHHHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEETTEEEEEECCSSSSCCSSC-HHHHHHHHHHH-TSTTCCEEE
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCHHH-HHHHHHHHHHH-HCCCCCEEE
T ss_conf 568999999982788999998811068778999978916999983789996789-99999999998-089974389
No 10
>1uwd_A Hypothetical protein TM0487; structural genomics, unknown function, contains PAAD domain, similar to PAAD protein, unknown activity; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=83.73 E-value=1.2 Score=23.76 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHH---CCCCEEEEEEEC-CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99999999987777875---289759996433-4799996366466666899999999999999789700355
Q gi|254780430|r 119 QRIKEVLDNRVRPAVAR---DGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 (189)
Q Consensus 119 ~~i~~~l~~~IrP~l~~---dGG~i~~~~~~~-g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~vpev~~V~ 187 (189)
++|.+.|.+-+.|.+.. |=|-|.-+.+++ |.|+|.|.=.+.+||... .+.+.|+..|+ .++.+..|.
T Consensus 9 e~V~~aL~~V~DPel~~~IvdLGlV~~i~i~~~g~v~v~~~lt~~~CP~~~-~i~~~i~~al~-~~~gv~~V~ 79 (103)
T 1uwd_A 9 EDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAG-MILSDAEEAIK-KIEGVNNVE 79 (103)
T ss_dssp HHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSSHH-HHHHHHHHHHH-TSSSCCEEE
T ss_pred HHHHHHHHCCCCCCCCCCEECCCCEEEEEECCCCEEEEEEEECCCCCCHHH-HHHHHHHHHHH-CCCCCCEEE
T ss_conf 999999817889999988443683435786269808999986899986579-99999999998-089974289
No 11
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta tetrameric protein, PSI, protein structure initiative; 2.80A {Campylobacter jejuni} SCOP: d.258.1.1
Probab=60.76 E-value=3.7 Score=20.71 Aligned_cols=28 Identities=21% Similarity=0.200 Sum_probs=19.7
Q ss_pred CCHHHHHHHHCCCCEEEEECCCEEEEEE
Q ss_conf 3468898741688107998087799831
Q gi|254780430|r 38 ISPLASRIFSIPGIASVYFGYDFITVGK 65 (189)
Q Consensus 38 ~spLa~~Lf~i~GV~~Vfi~~nFITVtK 65 (189)
++.||+.||.||.|+.|-++..|-..++
T Consensus 227 da~LA~a~mSIpAvKgvEfG~GF~~a~~ 254 (370)
T 1sq1_A 227 DSKLAHALMGINAVKAVEIGEGINASKM 254 (370)
T ss_dssp HHHHHHHHHTSTTEEEEEETTGGGGGGS
T ss_pred HHHHHHHHHCCCCEEEEEECCCEEEECC
T ss_conf 6999998726654478996477031114
No 12
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.05A {Aquifex aeolicus} SCOP: d.258.1.1
Probab=56.27 E-value=4.6 Score=20.17 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=19.6
Q ss_pred CCHHHHHHHHCCCCEEEEECCCEEEEEE
Q ss_conf 3468898741688107998087799831
Q gi|254780430|r 38 ISPLASRIFSIPGIASVYFGYDFITVGK 65 (189)
Q Consensus 38 ~spLa~~Lf~i~GV~~Vfi~~nFITVtK 65 (189)
++-||+.||.||.|+.|-++..|=..+.
T Consensus 253 da~LA~almSIpAvKgVEfG~Gf~~a~~ 280 (401)
T 1q1l_A 253 DGRIAQAMMSIQAIKGVEIGLGFEAARR 280 (401)
T ss_dssp HHHHHHHHHTSTTEEEEEETTGGGGGGS
T ss_pred HHHHHHHHHCCCCCEEEEECCCHHHHHC
T ss_conf 2999998726501303420454324436
No 13
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A {Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A
Probab=54.74 E-value=3.6 Score=20.83 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=15.4
Q ss_pred CCHHHHHHHHCCCCEEEEECCCEEEEE
Q ss_conf 346889874168810799808779983
Q gi|254780430|r 38 ISPLASRIFSIPGIASVYFGYDFITVG 64 (189)
Q Consensus 38 ~spLa~~Lf~i~GV~~Vfi~~nFITVt 64 (189)
++.||+.||.||.|+.|-++..|=...
T Consensus 239 da~LA~AlmSIpAvKgVEfG~Gf~~a~ 265 (382)
T 1r53_A 239 EAMLAHAMLSIPASKGFEIGSGFQGVS 265 (382)
T ss_dssp HHHHHHHHHTSTTBCCCEETTTTGGGG
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHH
T ss_conf 489999873421235788635402643
No 14
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal- kingston bacterial structural genomics initiative; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=53.88 E-value=9.2 Score=18.27 Aligned_cols=12 Identities=33% Similarity=0.526 Sum_probs=7.3
Q ss_pred ECCEEEEEECCC
Q ss_conf 334799996366
Q gi|254780430|r 146 RDGIVFLSMRGA 157 (189)
Q Consensus 146 ~~g~v~v~~~Ga 157 (189)
.+|.+.-.+.|.
T Consensus 144 ~~G~i~~~~~g~ 155 (174)
T 1xzo_A 144 PDGKVLKDYNGV 155 (174)
T ss_dssp TTSEEEEEEESS
T ss_pred CCCEEEEEECCC
T ss_conf 998099998689
No 15
>2o11_A Chorismate synthase; shikimate pathway, lyase; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A
Probab=52.97 E-value=6.4 Score=19.26 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=8.6
Q ss_pred HHHHHHHHCCCCEEEEECCCEE
Q ss_conf 6889874168810799808779
Q gi|254780430|r 40 PLASRIFSIPGIASVYFGYDFI 61 (189)
Q Consensus 40 pLa~~Lf~i~GV~~Vfi~~nFI 61 (189)
.||+.||.||.|+.|-++..|=
T Consensus 247 ~La~almSIpAVKgVEfG~Gf~ 268 (407)
T 2o11_A 247 QLAAAVMGIQAIKGVEIGDGFQ 268 (407)
T ss_dssp HHHHHHHTSTTEEEEEETTHHH
T ss_pred HHHHHHHCCCCCEEEEECCCHH
T ss_conf 9999873762212564146636
No 16
>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase; HET: FMN; 1.95A {Helicobacter pylori} SCOP: d.258.1.1 PDB: 1umf_A
Probab=50.06 E-value=6.6 Score=19.17 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=8.3
Q ss_pred CHHHHHHHHCCCCE
Q ss_conf 46889874168810
Q gi|254780430|r 39 SPLASRIFSIPGIA 52 (189)
Q Consensus 39 spLa~~Lf~i~GV~ 52 (189)
--+|++|++--||+
T Consensus 136 GaiAk~~L~~~gI~ 149 (365)
T 1um0_A 136 GAFAKMLLREIGIV 149 (365)
T ss_dssp HHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHCCCE
T ss_conf 99999999972871
No 17
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A {Streptococcus pneumoniae} SCOP: d.258.1.1
Probab=48.18 E-value=7.4 Score=18.88 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=13.0
Q ss_pred CCHHHHHHHHCCCCEEEEECCCEEEEE
Q ss_conf 346889874168810799808779983
Q gi|254780430|r 38 ISPLASRIFSIPGIASVYFGYDFITVG 64 (189)
Q Consensus 38 ~spLa~~Lf~i~GV~~Vfi~~nFITVt 64 (189)
++-||+.||.||.|+.|-++..|=..+
T Consensus 240 da~LA~A~mSIpAvKgvEfG~GF~~a~ 266 (388)
T 1qxo_A 240 DARLAQAVVSINAFKGVEFGLGFEAGY 266 (388)
T ss_dssp HHHHHHHHHTSTTEEEEEETTGGGGGG
T ss_pred HHHHHHHHHCCHHHHEECCCCCHHHHH
T ss_conf 499999872723441202165375764
No 18
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=46.39 E-value=15 Score=16.91 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCCHHHH
Q ss_conf 40268899999999987777875289759996433479999636646666689
Q gi|254780430|r 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSAS 165 (189)
Q Consensus 113 ~~~~~~~~i~~~l~~~IrP~l~~dGG~i~~~~~~~g~v~v~~~GaC~~Cpss~ 165 (189)
..+++++.|..+|.+.|.+-+.-+-|+=-|.+=- | .|+|++|++-+
T Consensus 97 ~l~~LL~~V~~~Ia~~Is~ei~v~tG~~~~~~~~-g------~~~~~~~g~c~ 142 (151)
T 2pih_A 97 EVNDLLQLVAHTISNQVTNEIITSTGGDLLKGET-G------SKVKHSNNSCS 142 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-C------CCCCCCCCCCC
T ss_conf 9999999999999997203633578998678888-8------88788999820
No 19
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=46.28 E-value=4.2 Score=20.42 Aligned_cols=35 Identities=26% Similarity=0.600 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEE-CCEEEEEECCCCCCCHHH
Q ss_conf 999999998777787528975999643-347999963664666668
Q gi|254780430|r 120 RIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSA 164 (189)
Q Consensus 120 ~i~~~l~~~IrP~l~~dGG~i~~~~~~-~g~v~v~~~GaC~~Cpss 164 (189)
.|+..|+. -..=|-++-++-+ +|. |.|+|.+||-.
T Consensus 32 lv~AMLer------L~aMGKierie~~~sgC----LsGSCKsCPEg 67 (87)
T 2k02_A 32 LIDAMLER------MEAMGKVVRISETSEGC----LSGSCKSCPEG 67 (87)
T ss_dssp HHHHHHHH------HHTTCCSEEEEEECCSS----CSSSSSSCSSC
T ss_pred HHHHHHHH------HHHCCCEEEECCCCCCC----CCCCCCCCCCC
T ss_conf 99999999------98735767603455756----47777899975
No 20
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=45.57 E-value=16 Score=16.73 Aligned_cols=19 Identities=5% Similarity=-0.220 Sum_probs=10.2
Q ss_pred HHCCCCEEEEEEECCEEEE
Q ss_conf 7528975999643347999
Q gi|254780430|r 134 ARDGGDIVFKGYRDGIVFL 152 (189)
Q Consensus 134 ~~dGG~i~~~~~~~g~v~v 152 (189)
-.|...+-+++-++.++..
T Consensus 142 i~Hs~~~~LIDp~G~i~~~ 160 (200)
T 2b7k_A 142 VDHSIFFYLMDPEGQFVDA 160 (200)
T ss_dssp TTTCCCEEEECTTSCEEEE
T ss_pred EECCCEEEEECCCCCEEEE
T ss_conf 5042169999499968989
No 21
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=43.85 E-value=4.7 Score=20.10 Aligned_cols=24 Identities=33% Similarity=0.693 Sum_probs=16.5
Q ss_pred CCCEEEEEEE-CCEEEEEECCCCCCCHHH
Q ss_conf 8975999643-347999963664666668
Q gi|254780430|r 137 GGDIVFKGYR-DGIVFLSMRGACSGCPSA 164 (189)
Q Consensus 137 GG~i~~~~~~-~g~v~v~~~GaC~~Cpss 164 (189)
=|-++-++-+ +|. |.|+|.+||-+
T Consensus 43 MGKierie~d~sgC----LsGsCK~CPE~ 67 (78)
T 1xn7_A 43 MGKAVRIQEEPDGC----LSGSCKSCPEG 67 (78)
T ss_dssp HTSEEEECCCCCCC----CCSSCCCCCCC
T ss_pred CCCEEEECCCCCCC----CCCCCCCCCCC
T ss_conf 35767612455756----27767899986
No 22
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, structural genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=42.95 E-value=15 Score=16.95 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=16.7
Q ss_pred EEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 996433479999636646666689999999999999
Q gi|254780430|r 142 FKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 (189)
Q Consensus 142 ~~~~~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~ 177 (189)
+++ ++|.+.-++.|.= +...++..|+.+||
T Consensus 152 LID-~dGkiv~~~~~~~-----~~e~i~~~I~~LLK 181 (181)
T 2p31_A 152 LVA-PDGKVVGAWDPTV-----SVEEVRPQITALVR 181 (181)
T ss_dssp EEC-TTSCEEEEECTTS-----CHHHHHHHHHTTCC
T ss_pred EEC-CCCCEEEEECCCC-----CHHHHHHHHHHHHC
T ss_conf 997-9993999979999-----98999999999759
No 23
>3cyn_A Probable glutathione peroxidase 8; thioredoxin fold, membrane, oxidoreductase, transmembrane, structural genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=40.92 E-value=19 Score=16.28 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=22.0
Q ss_pred EEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99643347999963664666668999999999999997897
Q gi|254780430|r 142 FKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 (189)
Q Consensus 142 ~~~~~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~vpe 182 (189)
+++ .+|.+.-++.|... ..+++.-|+.+|++.+-+
T Consensus 150 LID-~~G~iv~~~~~~~~-----~~~i~~dI~~LL~e~~~~ 184 (189)
T 3cyn_A 150 LVN-PEGQVVKFWRPEEP-----IEVIRPDIAALVRQVIIK 184 (189)
T ss_dssp EEC-TTSCEEEEECTTSC-----GGGTHHHHHHHHHHHHHH
T ss_pred EEC-CCCCEEEEECCCCC-----HHHHHHHHHHHHHHHHHH
T ss_conf 997-99989988699999-----899999999999999873
No 24
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=40.46 E-value=6.4 Score=19.25 Aligned_cols=28 Identities=4% Similarity=-0.072 Sum_probs=15.5
Q ss_pred ECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 334799996366466666899999999999999
Q gi|254780430|r 146 RDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 (189)
Q Consensus 146 ~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~ 178 (189)
++|.+.-++.|. .+..-+...|+.+|.+
T Consensus 155 ~~G~i~~~~~G~-----~~~~~l~~~i~~ll~e 182 (183)
T 3lwa_A 155 KQHRPAAVFLRE-----VTSKDVLDVALPLVDE 182 (183)
T ss_dssp TTSCEEEEECSC-----CCHHHHHHHHHHHHHC
T ss_pred CCCEEEEEEECC-----CCHHHHHHHHHHHHHC
T ss_conf 999899999489-----9989999999999845
No 25
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, cytoplasm, oxidoreductase, peroxidase, redox-active center; 2.02A {Saccharomyces cerevisiae}
Probab=38.86 E-value=14 Score=17.10 Aligned_cols=32 Identities=13% Similarity=0.278 Sum_probs=19.1
Q ss_pred EEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99964334799996366466666899999999999999
Q gi|254780430|r 141 VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 (189)
Q Consensus 141 ~~~~~~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~ 178 (189)
-+++ ++|.+.-++.|... ...+.+-|+.+|++
T Consensus 138 fLID-~~G~iv~~~~~~~~-----~~~l~~~I~~lL~e 169 (171)
T 3cmi_A 138 FLVD-KKGKVYERYSSLTK-----PSSLSETIEELLKE 169 (171)
T ss_dssp EEEC-SSSCEEEEECTTSC-----GGGGHHHHHHHHTC
T ss_pred EEEC-CCCCEEEEECCCCC-----HHHHHHHHHHHHHH
T ss_conf 9998-99969999799999-----99999999999972
No 26
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=36.86 E-value=22 Score=15.89 Aligned_cols=32 Identities=13% Similarity=0.245 Sum_probs=18.7
Q ss_pred EEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99964334799996366466666899999999999999
Q gi|254780430|r 141 VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 (189)
Q Consensus 141 ~~~~~~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~ 178 (189)
-+++ ++|.+.-++.|... |. .|..-|+.+|++
T Consensus 137 ~LID-~~G~vv~~~~~~~~--p~---~l~~~I~~lL~e 168 (169)
T 2v1m_A 137 FLVD-RQGQPVKRYSPTTA--PY---DIEGDIMELLEK 168 (169)
T ss_dssp EEEC-TTSCEEEEECTTSC--GG---GGHHHHHHHHHC
T ss_pred EEEC-CCCCEEEEECCCCC--HH---HHHHHHHHHHCC
T ss_conf 9997-99949999799999--89---999999999764
No 27
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, structural genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=31.12 E-value=27 Score=15.31 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=26.3
Q ss_pred HHHHHHHHCCCCEEEEEC--CCEEEEEEC--CCCCHHHHHHHH
Q ss_conf 688987416881079980--877998314--668212348999
Q gi|254780430|r 40 PLASRIFSIPGIASVYFG--YDFITVGKD--QYDWEHLRPPVL 78 (189)
Q Consensus 40 pLa~~Lf~i~GV~~Vfi~--~nFITVtK~--~~eW~~i~p~I~ 78 (189)
-+-+.|-+++||.+|-+. ..-++|+-+ .++.++|...|.
T Consensus 25 ~Ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~I~ 67 (111)
T 2ofg_X 25 KIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIA 67 (111)
T ss_dssp HHHHHHTTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 9999864157823999988789899998899899999999999
No 28
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=30.86 E-value=23 Score=15.84 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=16.4
Q ss_pred EEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9964334799996366466666899999999999999
Q gi|254780430|r 142 FKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 (189)
Q Consensus 142 ~~~~~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~ 178 (189)
+++ ++|.+.-++.|.= +...|..-|+.+|+.
T Consensus 156 LID-kdG~Vv~~~~~~~-----~~~~l~~~I~~lLk~ 186 (190)
T 2vup_A 156 LID-RDGVPVERFSPGA-----SVKDIEKKLIPLLES 186 (190)
T ss_dssp EEC-TTSCEEEEECTTC-----CHHHHHHHHHHHHHC
T ss_pred EEC-CCCCEEEEECCCC-----CHHHHHHHHHHHHHH
T ss_conf 997-9984898869999-----969999999999998
No 29
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken structural genomics/proteomics initiative; 1.80A {Thermus thermophilus HB8} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=30.85 E-value=28 Score=15.28 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHCCCCE
Q ss_conf 99999999999999789700
Q gi|254780430|r 165 SETLKYGVANILNHFVPEVK 184 (189)
Q Consensus 165 ~~Tl~~gie~~l~~~vpev~ 184 (189)
..-|+.+|+.+|+..-|-+.
T Consensus 147 ~~~L~~Ai~~ll~g~~~~~~ 166 (188)
T 2cvb_A 147 SHDLEAAIEALLRGEEPPLK 166 (188)
T ss_dssp CCHHHHHHHHHHTTCCCCSS
T ss_pred HHHHHHHHHHHHCCCCCCCC
T ss_conf 89999999999838998966
No 30
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=29.38 E-value=21 Score=16.05 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=7.1
Q ss_pred ECCEEEEEECCC
Q ss_conf 334799996366
Q gi|254780430|r 146 RDGIVFLSMRGA 157 (189)
Q Consensus 146 ~~g~v~v~~~Ga 157 (189)
.+|.+.-+..|.
T Consensus 124 ~~G~i~~~~~G~ 135 (158)
T 3hdc_A 124 RKGIIRQRVTGG 135 (158)
T ss_dssp TTSBEEEEEESC
T ss_pred CCCEEEEEEECC
T ss_conf 999999999699
No 31
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 3; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=29.31 E-value=29 Score=15.12 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=22.4
Q ss_pred HHHHHHHCCCCEEEEEEEC-C-EEEEEECC
Q ss_conf 7777875289759996433-4-79999636
Q gi|254780430|r 129 VRPAVARDGGDIVFKGYRD-G-IVFLSMRG 156 (189)
Q Consensus 129 IrP~l~~dGG~i~~~~~~~-g-~v~v~~~G 156 (189)
.|=++..|||+|.+.+.++ | .+|+.|..
T Consensus 344 sk~~ae~~gG~i~v~S~~G~GT~~~l~L~~ 373 (419)
T 1y8o_A 344 SRLYARYFQGDLKLYSMEGVGTDAVIYLKA 373 (419)
T ss_dssp HHHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred HHHHHHHCCCEEEEEEECCCCEEEEEEEEC
T ss_conf 999999869989999647963699999728
No 32
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=27.28 E-value=17 Score=16.61 Aligned_cols=16 Identities=38% Similarity=0.675 Sum_probs=10.8
Q ss_pred EEEEEECCCCCCCHHHH
Q ss_conf 79999636646666689
Q gi|254780430|r 149 IVFLSMRGACSGCPSAS 165 (189)
Q Consensus 149 ~v~v~~~GaC~~Cpss~ 165 (189)
+|.| -.|.|+||....
T Consensus 193 v~~v-~~~~C~gC~~~l 208 (256)
T 3na7_A 193 IVTI-KKQACGGCFIRL 208 (256)
T ss_dssp EEEC-BTTBCTTTCCBC
T ss_pred EEEE-ECCCCCCCCCCC
T ss_conf 8973-599168878243
No 33
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=27.04 E-value=29 Score=15.20 Aligned_cols=12 Identities=8% Similarity=0.293 Sum_probs=4.2
Q ss_pred EEEEEECCEEEE
Q ss_conf 999643347999
Q gi|254780430|r 141 VFKGYRDGIVFL 152 (189)
Q Consensus 141 ~~~~~~~g~v~v 152 (189)
-+++=++.++|.
T Consensus 135 ~liD~~G~I~~~ 146 (165)
T 3ha9_A 135 VIMDKSSNVLYA 146 (165)
T ss_dssp EEEETTCCEEEE
T ss_pred EEECCCCEEEEE
T ss_conf 999899959999
No 34
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=26.79 E-value=33 Score=14.84 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=22.8
Q ss_pred HHHHHHHCCCCEEEEEEEC-C-EEEEEECCCCC
Q ss_conf 7777875289759996433-4-79999636646
Q gi|254780430|r 129 VRPAVARDGGDIVFKGYRD-G-IVFLSMRGACS 159 (189)
Q Consensus 129 IrP~l~~dGG~i~~~~~~~-g-~v~v~~~GaC~ 159 (189)
.|=++..+||+|++.+..+ | .+|++|...+.
T Consensus 343 sr~~ae~~GG~I~v~S~~G~GT~~~l~L~~~~~ 375 (388)
T 1gkz_A 343 SRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDG 375 (388)
T ss_dssp HHHHHHHTTCEEEEEEETTTEEEEEEEEECSSS
T ss_pred HHHHHHHCCCEEEEEEECCCCEEEEEEECCCCC
T ss_conf 999999869978999547964699999789999
No 35
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=26.26 E-value=33 Score=14.78 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=7.8
Q ss_pred EEEEECCEEEEEECC
Q ss_conf 996433479999636
Q gi|254780430|r 142 FKGYRDGIVFLSMRG 156 (189)
Q Consensus 142 ~~~~~~g~v~v~~~G 156 (189)
+++ ++|.+.-++.|
T Consensus 155 LID-~~G~iv~ry~~ 168 (183)
T 2obi_A 155 LID-KNGCVVKRYGP 168 (183)
T ss_dssp EEC-TTSCEEEEECT
T ss_pred EEC-CCCCEEEEECC
T ss_conf 998-99969989799
No 36
>3me7_A Putative uncharacterized protein; electron transfer protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=26.02 E-value=17 Score=16.63 Aligned_cols=27 Identities=4% Similarity=-0.212 Sum_probs=13.0
Q ss_pred ECCEEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 3347999963664666668999999999999
Q gi|254780430|r 146 RDGIVFLSMRGACSGCPSASETLKYGVANIL 176 (189)
Q Consensus 146 ~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l 176 (189)
.+|.+.-++.|.=. ...-+...|+.++
T Consensus 135 ~~G~i~~~~~G~~~----~~~~l~~~i~~~~ 161 (170)
T 3me7_A 135 PELQIKDYIYGVNY----NYLEFVNALRLAR 161 (170)
T ss_dssp TTSBEEEEEESSSC----CHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCC----CHHHHHHHHHHHH
T ss_conf 99969999848899----9999999999998
No 37
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein structure initiative; HET: MSE; 1.30A {Bacteroides fragilis nctc 9343}
Probab=25.81 E-value=34 Score=14.73 Aligned_cols=13 Identities=0% Similarity=-0.212 Sum_probs=6.6
Q ss_pred HHCCCCEEEEECC
Q ss_conf 4168810799808
Q gi|254780430|r 46 FSIPGIASVYFGY 58 (189)
Q Consensus 46 f~i~GV~~Vfi~~ 58 (189)
+.-.+|.-+.+..
T Consensus 63 ~~~~~v~vi~is~ 75 (142)
T 3eur_A 63 TAAKKLKVLSIYP 75 (142)
T ss_dssp HHTTSEEEEEEEC
T ss_pred HHCCCEEEEEECC
T ss_conf 4148848987648
No 38
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic degradation; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=25.00 E-value=22 Score=15.97 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=33.7
Q ss_pred HHHHHHHHCCCCEEEEECCCEEEEEEC---CCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 688987416881079980877998314---6682123489999999997401432
Q gi|254780430|r 40 PLASRIFSIPGIASVYFGYDFITVGKD---QYDWEHLRPPVLGMIMEHFISGDPI 91 (189)
Q Consensus 40 pLa~~Lf~i~GV~~Vfi~~nFITVtK~---~~eW~~i~p~I~~~I~~~l~~g~~~ 91 (189)
.-+.++.++|||..+|+|+.=+|+.-. +.+..+++..+...+..-...|.+.
T Consensus 180 enldeI~av~GvD~i~iGP~DLS~slG~pg~~~~p~v~~ai~~v~~~~~~~gk~~ 234 (287)
T 2v5j_A 180 KNLPQILDVEGVDGVFIGPADLSADMGYAGNPQHPEVQAAIEQAIVQIRESGKAP 234 (287)
T ss_dssp HTHHHHHTSTTEEEEEECHHHHHHHTTSTTCCCSHHHHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHCCCCCCEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCE
T ss_conf 9899986447887699892888753178889998789999999999999859952
No 39
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B
Probab=24.66 E-value=20 Score=16.11 Aligned_cols=19 Identities=11% Similarity=0.541 Sum_probs=9.9
Q ss_pred CCH-HHHHHHHHHHHHHHHC
Q ss_conf 821-2348999999999740
Q gi|254780430|r 69 DWE-HLRPPVLGMIMEHFIS 87 (189)
Q Consensus 69 eW~-~i~p~I~~~I~~~l~~ 87 (189)
+|. .|.+..+..+.+-|..
T Consensus 5 ~Wh~~Vt~~lRnhlV~KLv~ 24 (81)
T 1kdx_A 5 GWHEHVTQDLRSHLVHKLVQ 24 (81)
T ss_dssp TGGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHH
T ss_conf 18877699999999999998
No 40
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=24.21 E-value=36 Score=14.54 Aligned_cols=114 Identities=13% Similarity=0.059 Sum_probs=57.4
Q ss_pred CCHHHHHHHHCCCCEEEEEC--CC---EEEEEE-CCCCCHHHHHHHHHHHHHH---HHCC--CCCCCCCCCCCCCCCCCC
Q ss_conf 34688987416881079980--87---799831-4668212348999999999---7401--432323211222222222
Q gi|254780430|r 38 ISPLASRIFSIPGIASVYFG--YD---FITVGK-DQYDWEHLRPPVLGMIMEH---FISG--DPIIHNGGLGDMKLDDMG 106 (189)
Q Consensus 38 ~spLa~~Lf~i~GV~~Vfi~--~n---FITVtK-~~~eW~~i~p~I~~~I~~~---l~~g--~~~i~~~~~~~~~~~~~~ 106 (189)
-.|+=++|-.++||++|.-. .+ .|++.- ++.+=+....+|.+.+... |..+ .|.+..............
T Consensus 62 t~~iE~~l~~~~~v~~i~s~s~~~G~~~i~v~f~~~~d~~~a~~~v~~~l~~~~~~LP~~~~~p~i~~~~~~~~~~~~~~ 141 (1052)
T 2v50_A 62 VQVIEQQMNGIDNLRYISSESNSDGSMTITVTFEQGTDPDIAQVQVQNKLQLATPLLPQEVQRQGIRVTKAVKNFLMVVG 141 (1052)
T ss_dssp HHHHHTTCCSCTTEEEEECCEETTSEEEEEEEECSSCCHHHHHHHHHHHHHHHGGGSCHHHHTTCCEEECEEEEEEEEEE
T ss_pred HHHHHHHHCCCCCEEEEEEEEECCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 99999997189981899999707946999999978999799999999999988862898567785432467776069999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC--CEEEEEEECCEEEEEE
Q ss_conf 33445440268899999999987777875289--7599964334799996
Q gi|254780430|r 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGG--DIVFKGYRDGIVFLSM 154 (189)
Q Consensus 107 ~~~~~~~~~~~~~~i~~~l~~~IrP~l~~dGG--~i~~~~~~~g~v~v~~ 154 (189)
-...++..-...+.+..++++||.|.+-.| ++.+.+- .-.+.|.+
T Consensus 142 --~~~~~~~~~~~~l~~~~~~~l~~~L~~i~gV~~v~~~g~-~~e~~I~v 188 (1052)
T 2v50_A 142 --VVSTDGSMTKEDLSNYIVSNIQDPLSRTKGVGDFQVFGS-QYSMRIWL 188 (1052)
T ss_dssp --EEESSTTSCHHHHHHHHHHHTHHHHHTSTTEEEEEESSC-CEEEEEEE
T ss_pred --EECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCC-CEEEEEEE
T ss_conf --980799979999999999999999847999489995477-27999997
No 41
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=23.13 E-value=38 Score=14.41 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=16.9
Q ss_pred HHHHHHHHCCCCEEEEEC--CCEEEEEE
Q ss_conf 688987416881079980--87799831
Q gi|254780430|r 40 PLASRIFSIPGIASVYFG--YDFITVGK 65 (189)
Q Consensus 40 pLa~~Lf~i~GV~~Vfi~--~nFITVtK 65 (189)
-+-+.|-++|||.++-+. .+-++|+-
T Consensus 20 ~Ie~~l~~~~Gv~~v~v~~~~~~v~v~~ 47 (72)
T 1osd_A 20 TVKKAISKVEGVSKVDVTFETRQAVVTF 47 (72)
T ss_dssp HHHHHHHTSTTEEEEEEETTTTEEEEEE
T ss_pred HHHHHHHCCCCCEEEEEECCCCEEEEEE
T ss_conf 9999997399937999999799999998
No 42
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=22.37 E-value=40 Score=14.32 Aligned_cols=10 Identities=20% Similarity=0.404 Sum_probs=3.2
Q ss_pred HHHHHHHHCC
Q ss_conf 9999999789
Q gi|254780430|r 172 VANILNHFVP 181 (189)
Q Consensus 172 ie~~l~~~vp 181 (189)
.+..|++.-|
T Consensus 35 LqAal~RKyp 44 (111)
T 1xg8_A 35 LQPLLKRKYP 44 (111)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHCCCC
T ss_conf 9999807589
No 43
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=21.31 E-value=13 Score=17.44 Aligned_cols=50 Identities=22% Similarity=0.240 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC-EEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 88999999999877778752897599964334-79999636646666689999999999
Q gi|254780430|r 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLKYGVAN 174 (189)
Q Consensus 117 ~~~~i~~~l~~~IrP~l~~dGG~i~~~~~~~g-~v~v~~~GaC~~Cpss~~Tl~~gie~ 174 (189)
....+++++++ ++-.....-.-+++.+-+++ ++.|.+.- +..+++..+..
T Consensus 238 ~~~~v~~~~~~-~~~~~gr~y~~fe~~g~~dA~~vIV~~Gs-------~~~~v~Eav~~ 288 (1231)
T 2c42_A 238 VPGIVAEYMQK-VASLTGRSYKLFDYVGAPDAERVIVSMGS-------SCETIEEVINH 288 (1231)
T ss_dssp HHHHHHHHHHH-HHHHHSCCCCSEEEEECTTCSEEEEECST-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHCCCCCCCEECCCCCCCEEEEEECC-------CHHHHHHHHHH
T ss_conf 89999999999-99985645674212279999999999483-------18999999999
No 44
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=21.07 E-value=39 Score=14.34 Aligned_cols=13 Identities=0% Similarity=-0.266 Sum_probs=6.2
Q ss_pred HHCCCCEEEEECC
Q ss_conf 4168810799808
Q gi|254780430|r 46 FSIPGIASVYFGY 58 (189)
Q Consensus 46 f~i~GV~~Vfi~~ 58 (189)
+.-.++..+.+..
T Consensus 59 ~~~~~v~~~~i~~ 71 (142)
T 3ewl_A 59 VENGTLRVLAIYP 71 (142)
T ss_dssp HHHTSEEEEEEEC
T ss_pred HCCCCCEEEEEEC
T ss_conf 3034330489966
No 45
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=21.00 E-value=42 Score=14.14 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=14.8
Q ss_pred HHHHHHHHCCCCEEEEE--CCCEEEEEEC
Q ss_conf 68898741688107998--0877998314
Q gi|254780430|r 40 PLASRIFSIPGIASVYF--GYDFITVGKD 66 (189)
Q Consensus 40 pLa~~Lf~i~GV~~Vfi--~~nFITVtK~ 66 (189)
-+-+.|-+++||.++-+ ...-++|.-+
T Consensus 21 ~ie~~l~~~~gV~~~~v~~~~~~~~v~~d 49 (75)
T 1yjr_A 21 KIESSLTKHRGILYCSVALATNKAHIKYD 49 (75)
T ss_dssp HHHHHHTTSTTEEEEEEETTTTEEEEEEC
T ss_pred HHHHHHHCCCCCEEEEEECCCCEEEEEEC
T ss_conf 99999970899469999887999999989
No 46
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=20.72 E-value=18 Score=16.49 Aligned_cols=20 Identities=10% Similarity=0.086 Sum_probs=9.6
Q ss_pred HCCCCEEEEEEECCEEEEEECC
Q ss_conf 5289759996433479999636
Q gi|254780430|r 135 RDGGDIVFKGYRDGIVFLSMRG 156 (189)
Q Consensus 135 ~dGG~i~~~~~~~g~v~v~~~G 156 (189)
.|...+-+++ +|.+.-.+.|
T Consensus 136 ~Hs~~~~Lid--~G~~~~~~~~ 155 (172)
T 2k6v_A 136 DHTATTFVVK--EGRLVLLYSP 155 (172)
T ss_dssp EECCCEEEEE--TTEEEEEECH
T ss_pred ECCEEEEEEC--CCCEEEEECC
T ss_conf 6634699985--9939999868
No 47
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=20.51 E-value=43 Score=14.08 Aligned_cols=27 Identities=15% Similarity=0.162 Sum_probs=18.2
Q ss_pred HHHHHHHCCCCEEEEEEEC-C-EEEEEEC
Q ss_conf 7777875289759996433-4-7999963
Q gi|254780430|r 129 VRPAVARDGGDIVFKGYRD-G-IVFLSMR 155 (189)
Q Consensus 129 IrP~l~~dGG~i~~~~~~~-g-~v~v~~~ 155 (189)
.|-++..|||+|.+.+.++ | .++|.|.
T Consensus 320 sk~~~~~hgG~I~v~S~~G~GT~f~i~Lp 348 (394)
T 2btz_A 320 SRLYAKYFQGDLQLFSMEGFGTDAVIYLK 348 (394)
T ss_dssp HHHHHHHTTCEEEEEEETTTEEEEEEEEE
T ss_pred HHHHHHHCCCEEEEEEECCCCEEEEEEEE
T ss_conf 99999986998999960896169999970
No 48
>3e8p_A Uncharacterized protein; X-RAY Q8E9M7 SOR246 NESG structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shewanella oneidensis}
Probab=20.49 E-value=43 Score=14.08 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=13.3
Q ss_pred CCHHHHHHHHCCCCEEEEECCCEEEEE
Q ss_conf 346889874168810799808779983
Q gi|254780430|r 38 ISPLASRIFSIPGIASVYFGYDFITVG 64 (189)
Q Consensus 38 ~spLa~~Lf~i~GV~~Vfi~~nFITVt 64 (189)
..|+.+.| |++-+.+.++.+.+.
T Consensus 30 ~~Pf~~~L----G~~v~~~~~g~~~~~ 52 (164)
T 3e8p_A 30 HVPFHNLL----GLDIKRYDIDGVEVA 52 (164)
T ss_dssp SCHHHHHH----TCEEEEESSSCEEEE
T ss_pred CCCHHHHC----CCEEEEEECCEEEEE
T ss_conf 68789977----989999969989999
Done!