Query gi|254780430|ref|YP_003064843.1| nitrogen fixation protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 189
No_of_seqs 141 out of 1544
Neff 5.9
Searched_HMMs 13730
Date Wed Jun 1 04:54:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780430.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1veha_ d.52.8.1 (A:) HIRA-int 99.9 6.8E-27 5E-31 185.9 8.9 80 110-189 7-86 (92)
2 d1xhja_ d.52.8.1 (A:) Nitrogen 99.9 3.8E-25 2.7E-29 175.1 9.3 76 113-189 4-79 (88)
3 d2ffma1 d.267.1.1 (A:1-83) Hyp 99.9 1.8E-24 1.3E-28 170.8 5.3 80 1-81 2-82 (83)
4 d1th5a1 d.52.8.1 (A:154-226) N 99.8 4.8E-20 3.5E-24 143.2 5.1 68 117-189 4-72 (73)
5 d2cu6a1 d.52.8.2 (A:6-96) Hypo 85.3 0.45 3.3E-05 25.0 3.9 69 117-187 2-73 (91)
6 d1uwda_ d.52.8.2 (A:) Hypothet 78.1 1.9 0.00014 21.0 5.0 67 119-187 8-78 (102)
7 d1q1la_ d.258.1.1 (A:) Chorism 54.9 2.9 0.00021 19.9 1.9 29 37-65 248-276 (397)
8 d1sq1a_ d.258.1.1 (A:) Chorism 52.4 3.6 0.00026 19.3 2.1 27 38-64 227-253 (360)
9 d1um0a_ d.258.1.1 (A:) Chorism 51.3 3.6 0.00026 19.4 1.9 13 40-52 137-149 (365)
10 d1xzoa1 c.47.1.10 (A:3-174) Th 51.1 6.2 0.00045 17.8 3.2 12 146-157 142-153 (172)
11 d1r53a_ d.258.1.1 (A:) Chorism 47.7 3.1 0.00023 19.7 1.2 24 40-63 241-264 (371)
12 d1qxoa_ d.258.1.1 (A:) Chorism 47.3 4.5 0.00033 18.7 1.9 26 39-64 241-266 (388)
13 d1xn7a_ a.4.5.62 (A:) Hypothet 41.2 3.2 0.00023 19.7 0.4 23 138-164 44-67 (78)
14 d1e2ya_ c.47.1.10 (A:) Trypare 30.3 8.8 0.00064 16.9 1.2 15 147-161 133-148 (167)
15 d1wp0a1 c.47.1.10 (A:138-297) 30.3 16 0.0012 15.2 3.1 32 142-179 129-160 (160)
16 d1sb0a_ a.12.1.1 (A:) Kix doma 28.9 8.8 0.00064 16.9 1.0 20 69-88 5-25 (87)
17 d1q98a_ c.47.1.10 (A:) Thiol p 28.5 18 0.0013 15.0 2.6 13 143-155 135-147 (164)
18 d1xg8a_ c.47.1.17 (A:) Hypothe 26.8 19 0.0014 14.8 2.9 10 172-181 35-44 (111)
19 d2cvba1 c.47.1.10 (A:2-188) Pr 26.5 19 0.0014 14.8 3.2 20 166-185 147-166 (187)
20 d1jjcb1 a.6.1.1 (B:1-38,B:152- 25.8 12 0.00088 16.0 1.3 20 40-59 20-40 (77)
21 d2i71a1 e.72.1.1 (A:1-377) Hyp 24.1 21 0.0015 14.5 2.3 23 132-154 341-366 (377)
22 d1dkua1 c.61.1.2 (A:8-166) Pho 21.3 24 0.0017 14.2 4.3 26 135-160 23-48 (159)
No 1
>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.94 E-value=6.8e-27 Score=185.94 Aligned_cols=80 Identities=48% Similarity=0.932 Sum_probs=76.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 45440268899999999987777875289759996433479999636646666689999999999999978970035539
Q gi|254780430|r 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 (189)
Q Consensus 110 ~~~~~~~~~~~i~~~l~~~IrP~l~~dGG~i~~~~~~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~vpev~~V~~v 189 (189)
..++|+++.++|+++|+++|||+|++|||||+|++|++|+|||+|+|||+|||||++|||++||++||+++|||+.|++|
T Consensus 7 ~~~~d~e~~~~I~~vL~~~IrP~l~~dGGdv~lv~v~~g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~~vpev~~V~~v 86 (92)
T d1veha_ 7 GSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQV 86 (92)
T ss_dssp SCSSCCHHHHHHHHHHHHTTHHHHHHHSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHCCHHHHHCCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 88761899999999999740758997599469998508868999766778975189999999999999878985569882
No 2
>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}
Probab=99.92 E-value=3.8e-25 Score=175.09 Aligned_cols=76 Identities=39% Similarity=0.742 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 40268899999999987777875289759996433479999636646666689999999999999978970035539
Q gi|254780430|r 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 (189)
Q Consensus 113 ~~~~~~~~i~~~l~~~IrP~l~~dGG~i~~~~~~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~vpev~~V~~v 189 (189)
++.++.++|+++|+ +|||+|++|||||+|+++++|+|||+|+|||+|||||+.|||+|||++||+++|+++.|++|
T Consensus 4 ~~~~l~~~I~~vLe-~IRP~l~~dGGdvelv~v~~g~V~v~l~GaC~gC~~s~~Tlk~~Ie~~L~~~vpev~~V~~V 79 (88)
T d1xhja_ 4 ENPTMFDQVAEVIE-RLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQV 79 (88)
T ss_dssp CCSCHHHHHHHHHH-HHHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred CCHHHHHHHHHHHH-HHHHHHHHCCCCEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 75889999999999-86379985798379986359989999657878992089999999999999878997569986
No 3
>d2ffma1 d.267.1.1 (A:1-83) Hypothetical protein SAV1430 {Staphylococcus aureus [TaxId: 1280]}
Probab=99.89 E-value=1.8e-24 Score=170.80 Aligned_cols=80 Identities=23% Similarity=0.433 Sum_probs=73.4
Q ss_pred CEEECCCCCCHHHHHHHCCCEECCCCCEECCCHHHCCCCHHHHHHHHCCCCEEEEECCCEEEEEEC-CCCCHHHHHHHHH
Q ss_conf 910211488722435417975437886430696670134688987416881079980877998314-6682123489999
Q gi|254780430|r 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKD-QYDWEHLRPPVLG 79 (189)
Q Consensus 1 m~I~~e~TPNPn~lKFi~~~~i~~~g~~~f~~~~~a~~spLa~~Lf~i~GV~~Vfi~~nFITVtK~-~~eW~~i~p~I~~ 79 (189)
++|++|+|||||+|||++++.+..+|+.+|.+.++ ..+|||++||+++||++||+++|||||+|. +++|++|+|+|++
T Consensus 2 ~~I~~e~TPNPn~lKFi~~~~l~~~~~~~~~~~~~-~~~pla~~Lf~i~gV~~Vf~~~dFITVtK~~~~~W~~l~~~I~~ 80 (83)
T d2ffma1 2 KIISISETPNHNTMKITLSESREGMTSDTYTKVDD-SQPAFINDILKVEGVKSIFHVMDFISVDKENDANWETVLPKVEA 80 (83)
T ss_dssp CEEEEEECSSSSEEEEEESSCCSSSCCEEECSCCT-TSCHHHHHHHTSTTEEEEEEETTEEEEEECTTCCHHHHHHHHHH
T ss_pred CEEECCCCCCCCCEEEECCCCCCCCCCEEECCHHH-HCCHHHHHHHCCCCCEEEEEECCEEEEEECCCCCHHHHHHHHHH
T ss_conf 67871469892068882696525797202083455-04999999874779418998599999982799998999999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780430|r 80 MI 81 (189)
Q Consensus 80 ~I 81 (189)
++
T Consensus 81 ~~ 82 (83)
T d2ffma1 81 VF 82 (83)
T ss_dssp TT
T ss_pred HH
T ss_conf 75
No 4
>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]}
Probab=99.78 E-value=4.8e-20 Score=143.24 Aligned_cols=68 Identities=22% Similarity=0.432 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HCCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 889999999998777787-5289759996433479999636646666689999999999999978970035539
Q gi|254780430|r 117 VVQRIKEVLDNRVRPAVA-RDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 (189)
Q Consensus 117 ~~~~i~~~l~~~IrP~l~-~dGG~i~~~~~~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~vpev~~V~~v 189 (189)
..++|+.+|+ +|||+++ +|||||+|+++++|+|+|+|+|||+||+ ||++|||++||+++|||+.|+.|
T Consensus 4 ~ee~V~~vL~-eirP~l~a~dGGdvelv~i~~~~v~v~l~GaC~gC~----Tl~~gIe~~L~~~iPei~~V~~v 72 (73)
T d1th5a1 4 NEENVEKVLN-EIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVR----TVRIAVSKKLREKIPSIQIVQLL 72 (73)
T ss_dssp SHHHHHHHHT-TTHHHHTTTTCCCCCCCEEETTEEEECCCSSSSSSS----SHHHHHHHHHHHHCTTCSEEEEC
T ss_pred CHHHHHHHHH-HHCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCC----HHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 8999999999-855203206893399999509999999569876510----39999999999978986589945
No 5
>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}
Probab=85.32 E-value=0.45 Score=24.95 Aligned_cols=69 Identities=19% Similarity=0.261 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHH---CCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8899999999987777875---2897599964334799996366466666899999999999999789700355
Q gi|254780430|r 117 VVQRIKEVLDNRVRPAVAR---DGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 (189)
Q Consensus 117 ~~~~i~~~l~~~IrP~l~~---dGG~i~~~~~~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~vpev~~V~ 187 (189)
+.++|-+.|.+-+.|.+.. +=|-|.-+.+++|.|.+.|.=.+.+||... .+.+.++..|+ .+|.+.+|.
T Consensus 2 le~~v~eaL~~V~DPe~~~dIv~LGlV~~i~i~~~~v~v~l~lt~~~cp~~~-~i~~~i~~al~-~l~gv~~V~ 73 (91)
T d2cu6a1 2 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHD-SLGEAVRQALS-RLPGVEEVE 73 (91)
T ss_dssp HHHHHHHHHTTCEETTTTEETTTTTCEEEEEEETTEEEEEECCSSSSCCSSC-HHHHHHHHHHH-TSTTCCEEE
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHCCCEEEEEEECCCCEEEEECCCCCCCHHH-HHHHHHHHHHH-CCCCCCEEE
T ss_conf 6999999983688999996842145503789942641899974888974799-99999999998-089973289
No 6
>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}
Probab=78.11 E-value=1.9 Score=20.99 Aligned_cols=67 Identities=13% Similarity=0.143 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHH---CCCCEEEEEEEC-CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99999999987777875---289759996433-4799996366466666899999999999999789700355
Q gi|254780430|r 119 QRIKEVLDNRVRPAVAR---DGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 (189)
Q Consensus 119 ~~i~~~l~~~IrP~l~~---dGG~i~~~~~~~-g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~vpev~~V~ 187 (189)
++|.+.|.+-+-|.+.. +=|-|.-+.+++ |.|.+.|.=.+.+||. ...+.+.++..++ .+|.|.+|.
T Consensus 8 ~~V~~aL~~V~DPe~~~dIV~LGlV~~i~I~~~g~V~v~~~lt~~~Cp~-~~~i~~~i~~al~-~~~gV~~v~ 78 (102)
T d1uwda_ 8 EDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPL-AGMILSDAEEAIK-KIEGVNNVE 78 (102)
T ss_dssp HHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSS-HHHHHHHHHHHHH-TSSSCCEEE
T ss_pred HHHHHHHHCCCCCCCCCCEEECCCEEEEEECCCCCEEEEEECCCCCCCH-HHHHHHHHHHHHH-CCCCCCEEE
T ss_conf 9999998178899999261443623567751466427888648899962-7999999999998-289976089
No 7
>d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex aeolicus [TaxId: 63363]}
Probab=54.87 E-value=2.9 Score=19.94 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHCCCCEEEEECCCEEEEEE
Q ss_conf 13468898741688107998087799831
Q gi|254780430|r 37 EISPLASRIFSIPGIASVYFGYDFITVGK 65 (189)
Q Consensus 37 ~~spLa~~Lf~i~GV~~Vfi~~nFITVtK 65 (189)
-++.||+.||.||.|+.|-++..|=+.++
T Consensus 248 Lda~LA~AlmSIpAvKgvEfG~Gf~~a~~ 276 (397)
T d1q1la_ 248 IDGRIAQAMMSIQAIKGVEIGLGFEAARR 276 (397)
T ss_dssp HHHHHHHHHHTSTTEEEEEETTGGGGGGS
T ss_pred CHHHHHHHHHCCHHHHHHHCCCCHHHHHH
T ss_conf 24899998750401443012651667766
No 8
>d1sq1a_ d.258.1.1 (A:) Chorismate synthase, AroC {Campylobacter jejuni [TaxId: 197]}
Probab=52.38 E-value=3.6 Score=19.32 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=14.3
Q ss_pred CCHHHHHHHHCCCCEEEEECCCEEEEE
Q ss_conf 346889874168810799808779983
Q gi|254780430|r 38 ISPLASRIFSIPGIASVYFGYDFITVG 64 (189)
Q Consensus 38 ~spLa~~Lf~i~GV~~Vfi~~nFITVt 64 (189)
++.||+.+|.|+.|+.|-++..|-...
T Consensus 227 da~LA~A~mSIpAvKGVE~G~Gf~~a~ 253 (360)
T d1sq1a_ 227 DSKLAHALMGINAVKAVEIGEGINASK 253 (360)
T ss_dssp HHHHHHHHHTSTTEEEEEETTGGGGGG
T ss_pred CHHHHHHHHCCCCCEEEEECCCHHHHH
T ss_conf 358887773363100153056556542
No 9
>d1um0a_ d.258.1.1 (A:) Chorismate synthase, AroC {Helicobacter pylori [TaxId: 210]}
Probab=51.26 E-value=3.6 Score=19.36 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=7.6
Q ss_pred HHHHHHHHCCCCE
Q ss_conf 6889874168810
Q gi|254780430|r 40 PLASRIFSIPGIA 52 (189)
Q Consensus 40 pLa~~Lf~i~GV~ 52 (189)
-+|++|++--|++
T Consensus 137 aiAk~lL~~~gI~ 149 (365)
T d1um0a_ 137 AFAKMLLREIGIV 149 (365)
T ss_dssp HHHHHHHHHTTEE
T ss_pred HHHHHHHHHCCCE
T ss_conf 9999888754715
No 10
>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}
Probab=51.14 E-value=6.2 Score=17.85 Aligned_cols=12 Identities=33% Similarity=0.526 Sum_probs=6.9
Q ss_pred ECCEEEEEECCC
Q ss_conf 334799996366
Q gi|254780430|r 146 RDGIVFLSMRGA 157 (189)
Q Consensus 146 ~~g~v~v~~~Ga 157 (189)
.+|.+.-.+.|.
T Consensus 142 ~~G~i~~~~~g~ 153 (172)
T d1xzoa1 142 PDGKVLKDYNGV 153 (172)
T ss_dssp TTSEEEEEEESS
T ss_pred CCCEEEEEECCC
T ss_conf 998399998699
No 11
>d1r53a_ d.258.1.1 (A:) Chorismate synthase, AroC {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=47.73 E-value=3.1 Score=19.72 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=9.8
Q ss_pred HHHHHHHHCCCCEEEEECCCEEEE
Q ss_conf 688987416881079980877998
Q gi|254780430|r 40 PLASRIFSIPGIASVYFGYDFITV 63 (189)
Q Consensus 40 pLa~~Lf~i~GV~~Vfi~~nFITV 63 (189)
-||+.+|.|+.|+.|-++..|=..
T Consensus 241 ~LA~A~mSIpAVKgVEfG~GF~~a 264 (371)
T d1r53a_ 241 MLAHAMLSIPASKGFEIGSGFQGV 264 (371)
T ss_dssp HHHHHHHTSTTBCCCEETTTTGGG
T ss_pred HHHHHHHCCCCEEEEEECCCCHHH
T ss_conf 888877424100256504561176
No 12
>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus pneumoniae [TaxId: 1313]}
Probab=47.29 E-value=4.5 Score=18.74 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=11.4
Q ss_pred CHHHHHHHHCCCCEEEEECCCEEEEE
Q ss_conf 46889874168810799808779983
Q gi|254780430|r 39 SPLASRIFSIPGIASVYFGYDFITVG 64 (189)
Q Consensus 39 spLa~~Lf~i~GV~~Vfi~~nFITVt 64 (189)
+-||+.||.||.|+.|-++..|=...
T Consensus 241 a~La~AlmSIpAvKgvEfG~GF~~a~ 266 (388)
T d1qxoa_ 241 ARLAQAVVSINAFKGVEFGLGFEAGY 266 (388)
T ss_dssp HHHHHHHHTSTTEEEEEETTGGGGGG
T ss_pred HHHHHHHHCCCCEEEEECCCCHHHHH
T ss_conf 89998774243113453056488897
No 13
>d1xn7a_ a.4.5.62 (A:) Hypothetical protein YhgG {Escherichia coli [TaxId: 562]}
Probab=41.18 E-value=3.2 Score=19.68 Aligned_cols=23 Identities=35% Similarity=0.774 Sum_probs=15.5
Q ss_pred CCEEEEEEE-CCEEEEEECCCCCCCHHH
Q ss_conf 975999643-347999963664666668
Q gi|254780430|r 138 GDIVFKGYR-DGIVFLSMRGACSGCPSA 164 (189)
Q Consensus 138 G~i~~~~~~-~g~v~v~~~GaC~~Cpss 164 (189)
|.++-++-+ +|. |.|+|.+||-.
T Consensus 44 GK~erie~d~~gC----LsGsCKsCPEg 67 (78)
T d1xn7a_ 44 GKAVRIQEEPDGC----LSGSCKSCPEG 67 (78)
T ss_dssp TSEEEECCCCCCC----CCSSCCCCCCC
T ss_pred HCCEECCCCCCCC----CCCCCCCCCCC
T ss_conf 0201311355646----26777899985
No 14
>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}
Probab=30.32 E-value=8.8 Score=16.89 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=7.2
Q ss_pred CC-EEEEEECCCCCCC
Q ss_conf 34-7999963664666
Q gi|254780430|r 147 DG-IVFLSMRGACSGC 161 (189)
Q Consensus 147 ~g-~v~v~~~GaC~~C 161 (189)
+| +.++.......+.
T Consensus 133 ~G~Ir~~~~~~~~~~~ 148 (167)
T d1e2ya_ 133 NGKLRQIIINDMPIGR 148 (167)
T ss_dssp TSBEEEEEEECTTBCC
T ss_pred CCEEEEEEECCCCCCC
T ss_conf 9889999973898899
No 15
>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.29 E-value=16 Score=15.22 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=15.1
Q ss_pred EEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99643347999963664666668999999999999997
Q gi|254780430|r 142 FKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 (189)
Q Consensus 142 ~~~~~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~ 179 (189)
+++- +|.+.=.+.+. .+...+...|...||+|
T Consensus 129 LId~-~G~i~~~~~~~-----~~~~~i~~~I~~~lk~~ 160 (160)
T d1wp0a1 129 LIGP-DGEFLDYFGQN-----KRKGEIAASIATHMRPY 160 (160)
T ss_dssp EECT-TSCEEEEEETT-----CCHHHHHHHHHHHHTTC
T ss_pred EECC-CCCEEEEECCC-----CCHHHHHHHHHHHHHCC
T ss_conf 9989-98599997999-----99899999999998609
No 16
>d1sb0a_ a.12.1.1 (A:) Kix domain of CBP (creb binding protein) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.92 E-value=8.8 Score=16.91 Aligned_cols=20 Identities=10% Similarity=0.522 Sum_probs=10.7
Q ss_pred CCH-HHHHHHHHHHHHHHHCC
Q ss_conf 821-23489999999997401
Q gi|254780430|r 69 DWE-HLRPPVLGMIMEHFISG 88 (189)
Q Consensus 69 eW~-~i~p~I~~~I~~~l~~g 88 (189)
+|. .|.+.++..+.+-|.+.
T Consensus 5 ~wh~~Vt~~lRnhlV~KLv~a 25 (87)
T d1sb0a_ 5 GWHEHVTQDLRSHLVHKLVQA 25 (87)
T ss_dssp TTGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHH
T ss_conf 788882499999999999987
No 17
>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}
Probab=28.49 E-value=18 Score=15.03 Aligned_cols=13 Identities=0% Similarity=0.082 Sum_probs=5.2
Q ss_pred EEEECCEEEEEEC
Q ss_conf 9643347999963
Q gi|254780430|r 143 KGYRDGIVFLSMR 155 (189)
Q Consensus 143 ~~~~~g~v~v~~~ 155 (189)
++=++.++|..+.
T Consensus 135 ID~~G~I~y~~~~ 147 (164)
T d1q98a_ 135 LDEQNNVLHSQLV 147 (164)
T ss_dssp ECTTSBEEEEEEC
T ss_pred ECCCCEEEEEEEC
T ss_conf 9999989999987
No 18
>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus aureus [TaxId: 1280]}
Probab=26.78 E-value=19 Score=14.84 Aligned_cols=10 Identities=20% Similarity=0.404 Sum_probs=3.3
Q ss_pred HHHHHHHHCC
Q ss_conf 9999999789
Q gi|254780430|r 172 VANILNHFVP 181 (189)
Q Consensus 172 ie~~l~~~vp 181 (189)
.+..|++.-|
T Consensus 35 Lqaal~RKyp 44 (111)
T d1xg8a_ 35 LQPLLKRKYP 44 (111)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHCCCC
T ss_conf 9999817589
No 19
>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}
Probab=26.49 E-value=19 Score=14.81 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHCCCCEE
Q ss_conf 99999999999997897003
Q gi|254780430|r 166 ETLKYGVANILNHFVPEVKD 185 (189)
Q Consensus 166 ~Tl~~gie~~l~~~vpev~~ 185 (189)
.-|+.+|+.+|+-.-+.+..
T Consensus 147 ~~L~~Ai~~ll~g~~~~~~~ 166 (187)
T d2cvba1 147 HDLEAAIEALLRGEEPPLKE 166 (187)
T ss_dssp CHHHHHHHHHHTTCCCCSSC
T ss_pred HHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999998279989566
No 20
>d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=25.80 E-value=12 Score=16.04 Aligned_cols=20 Identities=10% Similarity=-0.014 Sum_probs=8.4
Q ss_pred HHHHHHHHC-CCCEEEEECCC
Q ss_conf 688987416-88107998087
Q gi|254780430|r 40 PLASRIFSI-PGIASVYFGYD 59 (189)
Q Consensus 40 pLa~~Lf~i-~GV~~Vfi~~n 59 (189)
.|+..|-.. -.|++|.-..+
T Consensus 20 eLae~LT~~G~EVE~i~~~~d 40 (77)
T d1jjcb1 20 VLEERLAGLGFETDRIERVEE 40 (77)
T ss_dssp HHHHHHHHHTCCEEEEEECCC
T ss_pred HHHHHHHHCCCCCCCCCCCCC
T ss_conf 999998614540100223223
No 21
>d2i71a1 e.72.1.1 (A:1-377) Hypothetical protein SSO1389 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=24.11 E-value=21 Score=14.53 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=13.2
Q ss_pred HHHHCCC---CEEEEEEECCEEEEEE
Q ss_conf 7875289---7599964334799996
Q gi|254780430|r 132 AVARDGG---DIVFKGYRDGIVFLSM 154 (189)
Q Consensus 132 ~l~~dGG---~i~~~~~~~g~v~v~~ 154 (189)
..-+||| ++..+..++|.++|++
T Consensus 341 NF~AHaGLe~nvt~vk~~~~~i~v~y 366 (377)
T d2i71a1 341 ILYAHGGLPYAGTYVYKEKDKVYVTY 366 (377)
T ss_dssp HHHHTTTCCTTTCEEEEETTEEEEEC
T ss_pred CEEECCCCCCCEEEEEECCCEEEEEH
T ss_conf 01003486527299996698899987
No 22
>d1dkua1 c.61.1.2 (A:8-166) Phosphoribosylpyrophosphate synthetase {Bacillus subtilis [TaxId: 1423]}
Probab=21.32 E-value=24 Score=14.18 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=12.7
Q ss_pred HCCCCEEEEEEECCEEEEEECCCCCC
Q ss_conf 52897599964334799996366466
Q gi|254780430|r 135 RDGGDIVFKGYRDGIVFLSMRGACSG 160 (189)
Q Consensus 135 ~dGG~i~~~~~~~g~v~v~~~GaC~~ 160 (189)
..=|.+++..|-||-.++++...+.|
T Consensus 23 ~~l~~~~~~~FpDGE~~v~i~~~vrg 48 (159)
T d1dkua1 23 VQLGKCSVTRFSDGEVQINIEESIRG 48 (159)
T ss_dssp CCCCCEEEEECTTSCEEEEECSCCTT
T ss_pred CCCCCEEEEECCCCCEEEEEECCCCC
T ss_conf 97603188886999878986147788
Done!