BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780430|ref|YP_003064843.1| nitrogen fixation protein [Candidatus Liberibacter asiaticus str. psy62] (189 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780430|ref|YP_003064843.1| nitrogen fixation protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040107|gb|ACT56903.1| nitrogen fixation protein [Candidatus Liberibacter asiaticus str. psy62] Length = 189 Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust. Identities = 189/189 (100%), Positives = 189/189 (100%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF Sbjct: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR Sbjct: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV Sbjct: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 Query: 181 PEVKDIRTV 189 PEVKDIRTV Sbjct: 181 PEVKDIRTV 189 >gi|315122122|ref|YP_004062611.1| nitrogen fixation protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495524|gb|ADR52123.1| nitrogen fixation protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 190 Score = 323 bits (828), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 156/190 (82%), Positives = 171/190 (90%), Gaps = 1/190 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKFIPGQVVLV G++HFSNAKEA ISPLASRIFSI GI SVY GYDF Sbjct: 1 MFIQTEYTPNPATLKFIPGQVVLVRGSVHFSNAKEAGISPLASRIFSISGIVSVYLGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKL-DDMGSGDFIESDSAVVQ 119 ITV KD+YDWE L+P +LG+IMEHF+SGDPII NGGL + + DD+G GDF ESDS +VQ Sbjct: 61 ITVAKDKYDWEQLKPLILGVIMEHFMSGDPIISNGGLDAVNVNDDLGEGDFSESDSVIVQ 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IK+VLDNRVRPAVARDGGDIVFKGYRDGIVFLSM GACSGCPSA+ETLKYGV N+LNHF Sbjct: 121 KIKDVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMMGACSGCPSATETLKYGVINLLNHF 180 Query: 180 VPEVKDIRTV 189 VPEVKDIRTV Sbjct: 181 VPEVKDIRTV 190 >gi|325291785|ref|YP_004277649.1| scaffold protein Nfu/NifU [Agrobacterium sp. H13-3] gi|325059638|gb|ADY63329.1| putative scaffold protein Nfu/NifU [Agrobacterium sp. H13-3] Length = 187 Score = 244 bits (623), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 112/190 (58%), Positives = 146/190 (76%), Gaps = 4/190 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VVL G F N +A+ SPLA R+F+IPG+ VYFG+DF Sbjct: 1 MFIQTEATPNPATLKFLPGKVVLESGTAEFLNPAQAQASPLAERLFTIPGVTGVYFGFDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIES-DSAVVQ 119 ITV KD +W+HL+P +LG IMEHF+SG PI+ ++ ++ G+F E+ D +V Sbjct: 61 ITVTKDDAEWQHLKPAILGSIMEHFMSGRPIMGTAIAAEVSDEE---GEFFEAGDETIVA 117 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+LD RVRPAVA+DGGDI F+G+RDG VFL+M+GACSGCPS++ TLK+GV N+L HF Sbjct: 118 TIKELLDTRVRPAVAQDGGDITFRGFRDGTVFLNMKGACSGCPSSTATLKHGVQNLLRHF 177 Query: 180 VPEVKDIRTV 189 VPEV+++ V Sbjct: 178 VPEVREVEAV 187 >gi|222084688|ref|YP_002543217.1| nitrogen fixation protein [Agrobacterium radiobacter K84] gi|221722136|gb|ACM25292.1| nitrogen fixation protein [Agrobacterium radiobacter K84] Length = 188 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 109/190 (57%), Positives = 148/190 (77%), Gaps = 3/190 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VV+ G F +A EAE+SPLA+R+F IPG++ VYFGYDF Sbjct: 1 MFIQTEATPNPATLKFLPGKVVMESGTAEFRSADEAEVSPLAARLFDIPGVSGVYFGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI-ESDSAVVQ 119 I+V KD +W+HL+P +LG IMEHF+SG P++ + D SG+F E D+ +V Sbjct: 61 ISVSKDDQEWQHLKPAILGSIMEHFMSGKPVMGAASVLSEAQD--ASGEFFDEGDATIVL 118 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ RVRPAVA+DGGDI F+G+RDG V+L+M+G+C+GCPS++ TLK+G+ N+L HF Sbjct: 119 TIKELLETRVRPAVAQDGGDITFRGFRDGKVYLNMKGSCAGCPSSTATLKHGIQNLLRHF 178 Query: 180 VPEVKDIRTV 189 VPEV+++ V Sbjct: 179 VPEVQEVEAV 188 >gi|15887702|ref|NP_353383.1| hypothetical protein Atu0351 [Agrobacterium tumefaciens str. C58] gi|15155261|gb|AAK86168.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 187 Score = 240 bits (612), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 114/189 (60%), Positives = 145/189 (76%), Gaps = 2/189 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VVL G + F NA +A+ SPLA R+F+IPG+ VYFG+DF Sbjct: 1 MFIQTEATPNPATLKFLPGKVVLESGTVEFLNASQAQASPLAERLFTIPGVTGVYFGFDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ITV KD +W+HL+P +LG IMEHF+SG PI+ G ++ D F E D +V Sbjct: 61 ITVTKDDAEWQHLKPAILGSIMEHFMSGRPIM--GTAIAAEVSDEEGEFFEEGDETIVAT 118 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+LD RVRPAVA+DGGDI F+G+RDG VFL+M+GACSGCPS++ TLK+GV N+L HFV Sbjct: 119 IKELLDTRVRPAVAQDGGDITFRGFRDGTVFLNMKGACSGCPSSTATLKHGVQNLLRHFV 178 Query: 181 PEVKDIRTV 189 PEV+++ V Sbjct: 179 PEVREVEAV 187 >gi|227820624|ref|YP_002824594.1| putative scaffold protein Nfu/NifU [Sinorhizobium fredii NGR234] gi|227339623|gb|ACP23841.1| putative scaffold protein Nfu/NifU [Sinorhizobium fredii NGR234] Length = 188 Score = 240 bits (612), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 112/190 (58%), Positives = 145/190 (76%), Gaps = 3/190 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEI-SPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VV+ G F + +EA SPLA+R+FSIPG++ VYFGYD Sbjct: 1 MFIQTEATPNPATLKFLPGKVVMENGTAEFRSEEEARTGSPLAARLFSIPGVSGVYFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K+ +W+HL+P VLG IMEHF+SG PI+ G + D + E D A+V Sbjct: 61 FITVSKEGQEWQHLKPAVLGSIMEHFMSGQPIM--SGASRAEETDQEGEFYDEGDEAIVA 118 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+LD RVRPAVA+DGGDI F+G++DG VFL+M+GACSGCPS++ TL++GV N+L HF Sbjct: 119 TIKELLDTRVRPAVAQDGGDITFRGFKDGTVFLNMKGACSGCPSSTATLRHGVQNLLRHF 178 Query: 180 VPEVKDIRTV 189 VPEV+ + +V Sbjct: 179 VPEVESVESV 188 >gi|150395264|ref|YP_001325731.1| scaffold protein Nfu/NifU [Sinorhizobium medicae WSM419] gi|150026779|gb|ABR58896.1| Scaffold protein Nfu/NifU [Sinorhizobium medicae WSM419] Length = 188 Score = 240 bits (612), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 112/190 (58%), Positives = 145/190 (76%), Gaps = 3/190 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEI-SPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VV+ G F + +EA SPLA+R+FSIPGI VYFGYD Sbjct: 1 MFIQTEATPNPATLKFLPGKVVMENGTAEFRSEEEALAGSPLAARLFSIPGITGVYFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K+ +W+HL+P +LG IMEHF+SG PI+ G + +D F E D A+V Sbjct: 61 FITVSKEAQEWQHLKPAILGSIMEHFMSGQPIMSGAGRAEQLDED--EEFFDEGDEAIVA 118 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ RVRPAVA+DGGDI F+G++DG VFL+M+GACSGCPS++ TL++GV N+L HF Sbjct: 119 TIKELLETRVRPAVAQDGGDITFRGFKDGTVFLNMKGACSGCPSSTATLRHGVQNLLRHF 178 Query: 180 VPEVKDIRTV 189 VPEV+ + +V Sbjct: 179 VPEVESVESV 188 >gi|86356038|ref|YP_467930.1| nitrogen fixation protein [Rhizobium etli CFN 42] gi|86280140|gb|ABC89203.1| nitrogen fixation protein [Rhizobium etli CFN 42] Length = 188 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 109/188 (57%), Positives = 148/188 (78%), Gaps = 5/188 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPAT KF+PG+VV+ G F +A+EAE SPLA+R+F IPG+ VYFGYDF Sbjct: 1 MFIQTEATPNPATQKFLPGKVVMENGTAEFRSAEEAEASPLAARLFDIPGVTGVYFGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD--FIESDSAVV 118 I+V KD +W+HL+P +LG IMEHF+SG P++ G + +D+ +GD F E D ++V Sbjct: 61 ISVSKDNAEWQHLKPAILGSIMEHFMSGKPVM---GDASILSEDVDAGDEFFDEGDESIV 117 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+L+ RVRPAVA+DGGDI F+G++DG V+L+M+G+CSGCPS++ TLK+GV N+L H Sbjct: 118 LTIKELLETRVRPAVAQDGGDITFRGFKDGKVYLNMKGSCSGCPSSTATLKHGVQNLLRH 177 Query: 179 FVPEVKDI 186 FVPEV+++ Sbjct: 178 FVPEVQEV 185 >gi|15964154|ref|NP_384507.1| hypothetical protein SMc01119 [Sinorhizobium meliloti 1021] gi|307301299|ref|ZP_07581061.1| Scaffold protein Nfu/NifU [Sinorhizobium meliloti BL225C] gi|307317970|ref|ZP_07597407.1| Scaffold protein Nfu/NifU [Sinorhizobium meliloti AK83] gi|15073330|emb|CAC41838.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306896372|gb|EFN27121.1| Scaffold protein Nfu/NifU [Sinorhizobium meliloti AK83] gi|306903755|gb|EFN34342.1| Scaffold protein Nfu/NifU [Sinorhizobium meliloti BL225C] Length = 188 Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 112/190 (58%), Positives = 145/190 (76%), Gaps = 3/190 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEI-SPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VV+ G F + +EA SPLA+R+FSIPG+ VYFGYD Sbjct: 1 MFIQTEATPNPATLKFLPGKVVMENGTAEFRSEEEALAGSPLAARLFSIPGVTGVYFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K+ +W+HL+P +LG IMEHF+SG PI+ G G + D F E D A+V Sbjct: 61 FITVSKEAQEWQHLKPAILGSIMEHFMSGQPIM--SGAGRAEQTDEEDEFFDEGDEAIVA 118 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ RVRPAVA+DGGDI F+G++DG VFL+M+GACSGCPS++ TL++GV N+L HF Sbjct: 119 TIKELLETRVRPAVAQDGGDITFRGFKDGTVFLNMKGACSGCPSSTATLRHGVQNLLRHF 178 Query: 180 VPEVKDIRTV 189 VPEV+ + +V Sbjct: 179 VPEVEAVESV 188 >gi|190890051|ref|YP_001976593.1| nitrogen fixation protein [Rhizobium etli CIAT 652] gi|218509253|ref|ZP_03507131.1| nitrogen fixation protein [Rhizobium etli Brasil 5] gi|190695330|gb|ACE89415.1| nitrogen fixation protein [Rhizobium etli CIAT 652] Length = 188 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 109/188 (57%), Positives = 146/188 (77%), Gaps = 5/188 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPAT KF+PG+VV+ G F +A EAE SPLA+R+F IPG+ VYFGYDF Sbjct: 1 MFIQTEATPNPATQKFLPGKVVMENGTAEFRSAAEAEASPLAARLFEIPGVTGVYFGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD--FIESDSAVV 118 I+V KD +W+HL+P +LG IMEHF+SG P++ G + +D +GD F E D ++V Sbjct: 61 ISVSKDNAEWQHLKPAILGSIMEHFMSGKPVM---GDASILSEDADAGDEFFDEGDESIV 117 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+L+ RVRPAVA+DGGDI F+G++DG V+L+M+G+CSGCPS++ TLK+GV N+L H Sbjct: 118 LTIKELLETRVRPAVAQDGGDITFRGFKDGKVYLNMKGSCSGCPSSTATLKHGVQNLLRH 177 Query: 179 FVPEVKDI 186 FVPEV+++ Sbjct: 178 FVPEVQEV 185 >gi|209547636|ref|YP_002279553.1| Scaffold protein Nfu/NifU [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533392|gb|ACI53327.1| Scaffold protein Nfu/NifU [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 188 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 108/188 (57%), Positives = 148/188 (78%), Gaps = 5/188 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPAT KF+PG+VV+ G F +A+EAE SPLA+R+F IPG+ VYFGYDF Sbjct: 1 MFIQTEATPNPATQKFLPGKVVMENGTAEFRSAEEAEASPLAARLFEIPGVTGVYFGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD--FIESDSAVV 118 I+V KD +W+HL+P +LG IMEHF+SG P++ G + +D+ +GD F E D ++V Sbjct: 61 ISVSKDDAEWQHLKPAILGSIMEHFMSGKPVM---GDASILSEDVDAGDEFFDEGDESIV 117 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+L+ RVRPAVA+DGGDI F+G++DG V+L+M+G+C+GCPS++ TLK+GV N+L H Sbjct: 118 LTIKELLETRVRPAVAQDGGDITFRGFKDGKVYLNMKGSCAGCPSSTATLKHGVQNLLRH 177 Query: 179 FVPEVKDI 186 FVPEV+++ Sbjct: 178 FVPEVQEV 185 >gi|218678782|ref|ZP_03526679.1| nitrogen fixation protein [Rhizobium etli CIAT 894] Length = 188 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 108/188 (57%), Positives = 147/188 (78%), Gaps = 5/188 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPAT KF+PG+VV+ G F +A+EAE SPLA+R+F IPG+ VYFGYDF Sbjct: 1 MFIQTEATPNPATQKFLPGKVVMENGTAEFRSAEEAEASPLAARLFEIPGVTGVYFGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD--FIESDSAVV 118 I+V KD +W+HL+P +LG IMEHF+SG P++ G + +D +GD F E D ++V Sbjct: 61 ISVSKDNAEWQHLKPAILGSIMEHFMSGKPVM---GDASILSEDADAGDEFFDEGDESIV 117 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+L+ RVRPAVA+DGGDI F+G++DG V+L+M+G+C+GCPS++ TLK+GV N+L H Sbjct: 118 LTIKELLETRVRPAVAQDGGDITFRGFKDGKVYLNMKGSCAGCPSSTATLKHGVQNLLRH 177 Query: 179 FVPEVKDI 186 FVPEV+++ Sbjct: 178 FVPEVQEV 185 >gi|218461569|ref|ZP_03501660.1| Scaffold protein Nfu/NifU [Rhizobium etli Kim 5] Length = 188 Score = 238 bits (607), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 108/188 (57%), Positives = 147/188 (78%), Gaps = 5/188 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPAT KF+PG+VV+ G F +A+EA+ SPLA+R+F IPG+ VYFGYDF Sbjct: 1 MFIQTEATPNPATQKFLPGKVVMENGTAEFRSAEEAQASPLAARLFEIPGVTGVYFGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD--FIESDSAVV 118 I+V KD +W+HL+P +LG IMEHF+SG P++ G + +D +GD F E D ++V Sbjct: 61 ISVSKDDAEWQHLKPAILGSIMEHFMSGKPVM---GDASILSEDADAGDEFFDEGDESIV 117 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+L+ RVRPAVA+DGGDI F+G++DG V+L+M+G+CSGCPS++ TLK+GV N+L H Sbjct: 118 LTIKELLETRVRPAVAQDGGDITFRGFKDGKVYLNMKGSCSGCPSSTATLKHGVQNLLRH 177 Query: 179 FVPEVKDI 186 FVPEV+++ Sbjct: 178 FVPEVQEV 185 >gi|254470949|ref|ZP_05084352.1| nitrogen fixation protein [Pseudovibrio sp. JE062] gi|211960091|gb|EEA95288.1| nitrogen fixation protein [Pseudovibrio sp. JE062] Length = 186 Score = 237 bits (605), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 109/189 (57%), Positives = 146/189 (77%), Gaps = 3/189 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VVL EG F +A+EA ISPLA ++FSIPG+ ++FG+DF Sbjct: 1 MFIQTEATPNPATLKFLPGRVVLPEGTRDFRSAEEAAISPLAEKLFSIPGVVGIFFGHDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ITV KD+ DW+H+RP +LG IME+F++ PI+ GD D+G F D V Sbjct: 61 ITVTKDETDWQHMRPAILGAIMENFMANTPILKGEETGD---GDIGEEFFDAEDEETVTM 117 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+L+ RVRPAVA+DGGDI F+GYR+GIV+LSMRGAC+GCPS++ TL +G+ N++ HF+ Sbjct: 118 IKELLETRVRPAVAQDGGDITFRGYREGIVYLSMRGACAGCPSSTATLSHGIQNLMRHFI 177 Query: 181 PEVKDIRTV 189 PEV+++R + Sbjct: 178 PEVQEVRQM 186 >gi|307942729|ref|ZP_07658074.1| putative NFU1 iron-sulfur cluster scaffold-like protein [Roseibium sp. TrichSKD4] gi|307773525|gb|EFO32741.1| putative NFU1 iron-sulfur cluster scaffold-like protein [Roseibium sp. TrichSKD4] Length = 186 Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 106/191 (55%), Positives = 148/191 (77%), Gaps = 7/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VVL G F++ EA SPLA ++F +PG+A+++FGYDF Sbjct: 1 MFIQTEATPNPATLKFLPGRVVLETGTYDFTSPTEAGASPLAEKLFQVPGVAAIFFGYDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE-SDSAVV 118 ITV K + DW+H++P +LG IME F+SG P++ +G + +D G+F E +D V Sbjct: 61 ITVTKKEDTDWQHMKPAILGAIMEQFMSGQPVMASG-----QAEDTEEGEFFEEADQETV 115 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IK++LD RVRPAVA+DGGDI FKG+++GIV+LSMRGAC+GCPS++ TL++G+ N+L H Sbjct: 116 TVIKDLLDTRVRPAVAQDGGDITFKGFKEGIVYLSMRGACAGCPSSTATLQHGIQNLLKH 175 Query: 179 FVPEVKDIRTV 189 FVPEV+++R + Sbjct: 176 FVPEVQEVRPI 186 >gi|222147346|ref|YP_002548303.1| hypothetical protein Avi_0430 [Agrobacterium vitis S4] gi|221734336|gb|ACM35299.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 186 Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 107/189 (56%), Positives = 143/189 (75%), Gaps = 3/189 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VV+ G F + + A SPLA ++F+IPG+ SV+FGYDF Sbjct: 1 MFIQTESTPNPATLKFLPGKVVMDNGTAEFRDREAAMASPLAEKLFAIPGVTSVFFGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +TV KD +W HL+P +LG IMEHF+SG PI+ + GD D+ F E D +V Sbjct: 61 VTVTKDTAEWPHLKPAILGSIMEHFMSGAPIMGSAVAGDEASDEEF---FNEGDETIVAT 117 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+L+ RVRPAVA+DGGDI F+G+RDG VFL+M+G+C+GCPS++ TLK+GV N+L HF+ Sbjct: 118 IKELLETRVRPAVAQDGGDITFRGFRDGKVFLNMKGSCAGCPSSTATLKHGVQNLLRHFI 177 Query: 181 PEVKDIRTV 189 PEV+++ V Sbjct: 178 PEVQEVEAV 186 >gi|118590483|ref|ZP_01547885.1| nitrogen-fixing NifU-like protein [Stappia aggregata IAM 12614] gi|118436946|gb|EAV43585.1| nitrogen-fixing NifU-like protein [Stappia aggregata IAM 12614] Length = 185 Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 103/190 (54%), Positives = 150/190 (78%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VVL EG F + +A +SPLA ++F +PG+ +V+FG+DF Sbjct: 1 MFIQTEATPNPATLKFLPGRVVLPEGTYDFRSKADAGVSPLAQKLFDVPGVVAVFFGHDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIES-DSAVVQ 119 +TV KD+ DW+H++P +LG+IME F+SG P++ + +++ G+F E+ D+ V Sbjct: 61 VTVTKDETDWQHMKPAILGVIMEQFMSGQPVMATS-----EAENIEEGEFFEAGDADTVS 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ RVRPAVA+DGGDI FKG+++GIV+LSMRGAC+GCPS++ TL++G+ N+L HF Sbjct: 116 TIKELLETRVRPAVAQDGGDITFKGFKEGIVYLSMRGACAGCPSSTATLQHGIQNLLRHF 175 Query: 180 VPEVKDIRTV 189 VPEV+++R + Sbjct: 176 VPEVEEVRPI 185 >gi|110636361|ref|YP_676569.1| nitrogen-fixing NifU-like [Mesorhizobium sp. BNC1] gi|110287345|gb|ABG65404.1| nitrogen-fixing NifU-like protein [Chelativorans sp. BNC1] Length = 189 Score = 234 bits (598), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 108/191 (56%), Positives = 144/191 (75%), Gaps = 5/191 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VVL EG F +A A+ +SPLA+R+F +PG+ V+FG+D Sbjct: 1 MFIQTEATPNPATLKFLPGRVVLEEGTADFRSADSAQAVSPLAARLFEVPGVTGVFFGFD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI-ESDSAVV 118 FITV KD DW+HL+P +LG IMEHF+SG P++ D + S +F E+D +V Sbjct: 61 FITVTKDGADWQHLKPAILGTIMEHFMSGQPVM---AANDGSERETASSEFYDEADEEIV 117 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+L+ RVRPAVA+DGGDI F+GY +G VFL M+GAC+GCPS++ TLK+G+ N+L+H Sbjct: 118 TTIKELLETRVRPAVAQDGGDITFRGYENGTVFLHMKGACAGCPSSTATLKHGIQNLLHH 177 Query: 179 FVPEVKDIRTV 189 FVPEV+ + V Sbjct: 178 FVPEVQQVEQV 188 >gi|241202790|ref|YP_002973886.1| Scaffold protein Nfu/NifU [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856680|gb|ACS54347.1| Scaffold protein Nfu/NifU [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 188 Score = 234 bits (597), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 106/188 (56%), Positives = 145/188 (77%), Gaps = 5/188 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPAT KF+PG+VV+ G F + +EA+ SPLA+R+F I G+ VYFGYDF Sbjct: 1 MFIQTEATPNPATQKFLPGKVVMENGTAEFRSTEEAQASPLAARLFEISGVTGVYFGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD--FIESDSAVV 118 I+V KD DW+HL+P +LG IMEHF+SG P++ G + +D +GD F E D ++V Sbjct: 61 ISVSKDNADWQHLKPAILGSIMEHFMSGKPVM---GDASILSEDADAGDEFFDEGDESIV 117 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+L+ RVRPAVA+DGGDI F+G++DG V+L+M+G+C+GCPS++ TLK+GV N+L H Sbjct: 118 LTIKELLETRVRPAVAQDGGDITFRGFKDGKVYLNMKGSCAGCPSSTATLKHGVQNLLRH 177 Query: 179 FVPEVKDI 186 FVPEV+++ Sbjct: 178 FVPEVQEV 185 >gi|49476032|ref|YP_034073.1| hypothetical protein BH13490 [Bartonella henselae str. Houston-1] gi|49238840|emb|CAF28122.1| hypothetical protein BH13490 [Bartonella henselae str. Houston-1] Length = 192 Score = 231 bits (590), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 102/184 (55%), Positives = 142/184 (77%), Gaps = 1/184 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG VVL EG + F +++EA + SPLA+++F+IP + V+FGYD Sbjct: 1 MFIQTETTPNPATLKFLPGCVVLSEGVLEFRDSEEAAKNSPLAAKLFNIPNVNGVFFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K + +W+HL+P +LG IMEHF+SGDP+I+ + + + E D+ +V Sbjct: 61 FITVSKKEGEWQHLKPAILGTIMEHFLSGDPVINTNATRQAQTHALNEEFYNEKDADIVL 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ R+RPAVA DGGDI F+G+ +GIV+L+MRGAC+GCPS++ TLK+G+ N+L HF Sbjct: 121 TIKELLETRIRPAVANDGGDITFRGFENGIVYLNMRGACAGCPSSTATLKHGIENLLRHF 180 Query: 180 VPEV 183 +PEV Sbjct: 181 IPEV 184 >gi|319779939|ref|YP_004139415.1| Scaffold protein Nfu/NifU [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165827|gb|ADV09365.1| Scaffold protein Nfu/NifU [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 189 Score = 231 bits (588), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 109/191 (57%), Positives = 142/191 (74%), Gaps = 5/191 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEI-SPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+ VLVEG F +A A + SPLA R+F IPG+ V+FGYD Sbjct: 1 MFIQTESTPNPATLKFLPGKEVLVEGTADFRDADSAAVASPLAGRLFEIPGVTGVFFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE-SDSAVV 118 FITV KD DW+HL+P +LG IMEHF+SG P++ G + +G+F + +D +V Sbjct: 61 FITVTKDGPDWQHLKPAILGAIMEHFMSGAPVMAKAGPA---AETSQTGEFYDKADEELV 117 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD RVRPAVA+DGGDI F+G+ +G VFL M+GAC+GCPS++ TLK+G+ N+L H Sbjct: 118 ITIKELLDTRVRPAVAQDGGDITFRGFENGTVFLHMKGACAGCPSSTATLKHGIQNLLRH 177 Query: 179 FVPEVKDIRTV 189 FVPEV+ + V Sbjct: 178 FVPEVQQVEQV 188 >gi|328545933|ref|YP_004306042.1| nitrogen-fixing NifU-like protein [polymorphum gilvum SL003B-26A1] gi|326415673|gb|ADZ72736.1| Nitrogen-fixing NifU-like protein [Polymorphum gilvum SL003B-26A1] Length = 185 Score = 230 bits (587), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 102/190 (53%), Positives = 146/190 (76%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VVL +G F ++ EA SPLA ++F++PG+ +V+FG+DF Sbjct: 1 MFIQTEATPNPATLKFLPGRVVLADGTYDFRSSDEAGASPLAEKLFAVPGVVAVFFGHDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIES-DSAVVQ 119 ITV KD DW+H++P +LG IME F+SG P++ + + G +F +S D V Sbjct: 61 ITVTKDDTDWQHMKPAILGAIMEQFMSGTPVMRSAA-----VQAGGEDEFFDSDDEETVT 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IK++L+ RVRPAVA+DGGDI FKG+++G+V+LSMRGAC+GCPS++ TL++G+ N+L HF Sbjct: 116 VIKDLLETRVRPAVAQDGGDITFKGFKEGVVYLSMRGACAGCPSSTATLQHGIQNLLRHF 175 Query: 180 VPEVKDIRTV 189 VPEV+++R + Sbjct: 176 VPEVEEVRAI 185 >gi|260462744|ref|ZP_05810949.1| Scaffold protein Nfu/NifU [Mesorhizobium opportunistum WSM2075] gi|259031388|gb|EEW32659.1| Scaffold protein Nfu/NifU [Mesorhizobium opportunistum WSM2075] Length = 189 Score = 230 bits (586), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 108/191 (56%), Positives = 142/191 (74%), Gaps = 5/191 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEI-SPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+ VL+EG F +A A + SPLA R+F IPG+ V+FGYD Sbjct: 1 MFIQTESTPNPATLKFLPGKEVLLEGTADFRDADSAAVASPLAGRLFEIPGVTGVFFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE-SDSAVV 118 FITV KD DW+HL+P +LG IMEHF+SG P++ G + +G+F + +D +V Sbjct: 61 FITVTKDGPDWQHLKPAILGAIMEHFMSGAPVMAKAGPA---AETSQTGEFYDKADEELV 117 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD RVRPAVA+DGGDI F+G+ +G VFL M+GAC+GCPS++ TLK+G+ N+L H Sbjct: 118 ITIKELLDTRVRPAVAQDGGDITFRGFENGTVFLHMKGACAGCPSSTATLKHGIQNLLRH 177 Query: 179 FVPEVKDIRTV 189 FVPEV+ + V Sbjct: 178 FVPEVQQVEQV 188 >gi|13474434|ref|NP_106002.1| hypothetical protein mll5315 [Mesorhizobium loti MAFF303099] gi|14025187|dbj|BAB51788.1| mll5315 [Mesorhizobium loti MAFF303099] Length = 189 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 108/191 (56%), Positives = 141/191 (73%), Gaps = 5/191 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEI-SPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+ VL+EG F +A A SPLA R+F IPG+ V+FGYD Sbjct: 1 MFIQTESTPNPATLKFLPGKEVLLEGTADFRDADSAATASPLAGRLFEIPGVTGVFFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE-SDSAVV 118 FITV KD DW+HL+P +LG IMEHF+SG P++ G + +G+F + +D +V Sbjct: 61 FITVTKDGPDWQHLKPAILGAIMEHFMSGAPVMAKSGPA---AETSQTGEFYDKADEELV 117 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD RVRPAVA+DGGDI F+G+ +G VFL M+GAC+GCPS++ TLK+G+ N+L H Sbjct: 118 ITIKELLDTRVRPAVAQDGGDITFRGFENGTVFLHMKGACAGCPSSTATLKHGIQNLLRH 177 Query: 179 FVPEVKDIRTV 189 FVPEV+ + V Sbjct: 178 FVPEVQQVEQV 188 >gi|319409218|emb|CBI82862.1| NifU-related protein [Bartonella schoenbuchensis R1] Length = 196 Score = 228 bits (581), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 102/184 (55%), Positives = 140/184 (76%), Gaps = 1/184 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VVL +G + F N+KEA + SPLA+++F+IP ++SV G+D Sbjct: 1 MFIQTETTPNPATLKFLPGRVVLAKGVLEFHNSKEADQNSPLAAKLFTIPNVSSVLLGHD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FI V K+ +W+HL+P +LG IMEHF+S DP + N + + + E D+ +V Sbjct: 61 FIAVTKNDGEWQHLKPAILGTIMEHFLSNDPTVINDATLQTQAPEAYEEFYDEKDADIVM 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ RVRPAVA DGGDI F+G+ DGIV+L+MRGAC+GCPS++ TLK+G+ N+L HF Sbjct: 121 TIKEILETRVRPAVANDGGDITFRGFEDGIVYLNMRGACAGCPSSTATLKHGIENLLRHF 180 Query: 180 VPEV 183 +PEV Sbjct: 181 IPEV 184 >gi|153007498|ref|YP_001368713.1| scaffold protein Nfu/NifU [Ochrobactrum anthropi ATCC 49188] gi|151559386|gb|ABS12884.1| Scaffold protein Nfu/NifU [Ochrobactrum anthropi ATCC 49188] Length = 190 Score = 228 bits (581), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 103/190 (54%), Positives = 140/190 (73%), Gaps = 1/190 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VV+ EG F +A A SPLA+++FS+PG+ V+FGYD Sbjct: 1 MFIQTETTPNPATLKFLPGKVVMPEGTADFRDASTAGNTSPLAAKLFSVPGVTGVFFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K+ +W+HL+P +LG IMEHF+SG P + D F E+D+ V+ Sbjct: 61 FITVTKEDGEWQHLKPAILGTIMEHFMSGAPAMAGNSNADAAAAHGEEEFFDEADAETVE 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+++ RVRPAVA+DGGDI F+G+ +G VFL+M+GACSGCPS++ TLK+G+ N+L HF Sbjct: 121 IIKELIETRVRPAVAQDGGDITFRGFENGTVFLNMKGACSGCPSSTATLKHGIQNLLRHF 180 Query: 180 VPEVKDIRTV 189 VPEV+ + + Sbjct: 181 VPEVQQVEQI 190 >gi|239830990|ref|ZP_04679319.1| Scaffold protein Nfu/NifU [Ochrobactrum intermedium LMG 3301] gi|239823257|gb|EEQ94825.1| Scaffold protein Nfu/NifU [Ochrobactrum intermedium LMG 3301] Length = 211 Score = 227 bits (578), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 103/190 (54%), Positives = 139/190 (73%), Gaps = 1/190 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VV+ EG F + A SPLA+++FS+PG+ V+FGYD Sbjct: 22 MFIQTETTPNPATLKFLPGKVVMPEGTADFRDPSTAGNTSPLAAKLFSVPGVTGVFFGYD 81 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV KD +W+HL+P +LG IMEHF+SG P + D F E+D+ V+ Sbjct: 82 FITVTKDDGEWQHLKPAILGTIMEHFMSGAPAMAGNSNADAAAAHGDEEFFDEADAETVE 141 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+++ RVRPAVA+DGGDI F+G+ +G VFL+M+GACSGCPS++ TLK+G+ N+L HF Sbjct: 142 IIKELIETRVRPAVAQDGGDITFRGFENGTVFLNMKGACSGCPSSTATLKHGIQNLLRHF 201 Query: 180 VPEVKDIRTV 189 VPEV+ + + Sbjct: 202 VPEVQQVEQI 211 >gi|254503238|ref|ZP_05115389.1| Scaffold protein Nfu/NifU N terminal domain protein [Labrenzia alexandrii DFL-11] gi|222439309|gb|EEE45988.1| Scaffold protein Nfu/NifU N terminal domain protein [Labrenzia alexandrii DFL-11] Length = 185 Score = 226 bits (576), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 103/189 (54%), Positives = 146/189 (77%), Gaps = 4/189 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VVL EG F + +A SPLA ++F +PG+A+V+FG+DF Sbjct: 1 MFIQTEATPNPATLKFLPGRVVLPEGTYDFRSKADAGASPLAEKLFDVPGVAAVFFGHDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +TV KD DW+H++P +LG+IME F+SG P+++ G D++ + E+ V Sbjct: 61 VTVTKDDTDWQHMKPAILGVIMEQFMSGQPVMNAGESEDIEEGEFFEEGDQET----VAT 116 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+L+ RVRPAVA+DGGDI FKG+++GIV+LSMRGAC+GCPS++ TL++G+ N+L HFV Sbjct: 117 IKELLETRVRPAVAQDGGDITFKGFKEGIVYLSMRGACAGCPSSTATLQHGIQNLLRHFV 176 Query: 181 PEVKDIRTV 189 PEV+++R + Sbjct: 177 PEVEEVRPI 185 >gi|116250169|ref|YP_766007.1| nifU iron-sulphur cluster scaffold protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254817|emb|CAK05891.1| putative nifU iron-sulphur cluster scaffold protein [Rhizobium leguminosarum bv. viciae 3841] Length = 188 Score = 225 bits (574), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 103/186 (55%), Positives = 141/186 (75%), Gaps = 1/186 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPAT KF+PG+VV+ G F + +EA+ SPLA+R+F I G+ VYFGYDF Sbjct: 1 MFIQTEATPNPATQKFLPGKVVMENGTAEFRSTEEAQASPLAARLFEISGVTGVYFGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 I+V KD DW+HL+P +LG IMEHF+SG P++ + + D F E D ++V Sbjct: 61 ISVSKDNADWQHLKPAILGSIMEHFMSGKPVMGDASILSEDADAD-DEFFDEGDESIVLT 119 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+L+ RVRPAVA+DGGDI F+G++DG V+L+M+G+C+GCPS++ TLK+GV N+L HFV Sbjct: 120 IKELLETRVRPAVAQDGGDITFRGFKDGKVYLNMKGSCAGCPSSTATLKHGVQNLLRHFV 179 Query: 181 PEVKDI 186 PEV+++ Sbjct: 180 PEVQEV 185 >gi|148251664|ref|YP_001236249.1| putative nifU protein [Bradyrhizobium sp. BTAi1] gi|146403837|gb|ABQ32343.1| putative nifU protein [Bradyrhizobium sp. BTAi1] Length = 189 Score = 225 bits (573), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 101/187 (54%), Positives = 143/187 (76%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKFIPG+VVL G + FS+ + A SPLA R+F+I G+ V++G DF Sbjct: 1 MFIQTEATPNPATLKFIPGRVVLPSGTMEFSSREAAARSPLAERLFAIGGVTGVFYGADF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ITV K+ +W+HL+P +LG IMEH++SG P++ +G + D + E+D+ V Sbjct: 61 ITVTKNDGEWQHLKPAILGAIMEHYMSGAPLLADGSAANDDATDEDDEFYDEADTETVGM 120 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IK+++++RVRPAVA DGGDI F+G++DGIV+L+M+GACSGCPS++ TL++G+ N+L HFV Sbjct: 121 IKDLIESRVRPAVANDGGDITFRGFKDGIVYLNMKGACSGCPSSTATLQHGIQNLLKHFV 180 Query: 181 PEVKDIR 187 PEV ++R Sbjct: 181 PEVVEVR 187 >gi|240850980|ref|YP_002972380.1| nitrogen fixation protein [Bartonella grahamii as4aup] gi|240268103|gb|ACS51691.1| nitrogen fixation protein [Bartonella grahamii as4aup] Length = 192 Score = 224 bits (571), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 100/184 (54%), Positives = 139/184 (75%), Gaps = 1/184 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VVL EG + F + +EA + SPLA+++F+IP I V+ GYD Sbjct: 1 MFIQTETTPNPATLKFLPGRVVLSEGVLEFRDPEEAAKNSPLAAKLFNIPNINGVFLGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K + +W+HL+P +LG IMEHF+S +P+I + + + E D+ +V Sbjct: 61 FITVSKKEGEWQHLKPVILGTIMEHFLSNEPVITTNATIQAQTHALNEEFYDEKDADIVL 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ R+RPAVA DGGDI F+G+ +GIV+L+MRGAC+GCPS++ TLK+G+ N+L HF Sbjct: 121 TIKELLETRIRPAVANDGGDITFRGFENGIVYLNMRGACAGCPSSTATLKHGIENLLRHF 180 Query: 180 VPEV 183 +PEV Sbjct: 181 IPEV 184 >gi|225626680|ref|ZP_03784719.1| NifU-related protein [Brucella ceti str. Cudo] gi|254707168|ref|ZP_05168996.1| NifU-related protein [Brucella pinnipedialis M163/99/10] gi|254709289|ref|ZP_05171100.1| NifU-related protein [Brucella pinnipedialis B2/94] gi|254713288|ref|ZP_05175099.1| NifU-related protein [Brucella ceti M644/93/1] gi|254716359|ref|ZP_05178170.1| NifU-related protein [Brucella ceti M13/05/1] gi|256030812|ref|ZP_05444426.1| NifU-related protein [Brucella pinnipedialis M292/94/1] gi|256158837|ref|ZP_05456694.1| NifU-related protein [Brucella ceti M490/95/1] gi|256254218|ref|ZP_05459754.1| NifU-related protein [Brucella ceti B1/94] gi|260169716|ref|ZP_05756527.1| NifU-related protein [Brucella sp. F5/99] gi|261218142|ref|ZP_05932423.1| scaffold protein Nfu/NifU [Brucella ceti M13/05/1] gi|261221368|ref|ZP_05935649.1| scaffold protein Nfu/NifU [Brucella ceti B1/94] gi|261314644|ref|ZP_05953841.1| scaffold protein Nfu/NifU [Brucella pinnipedialis M163/99/10] gi|261316798|ref|ZP_05955995.1| scaffold protein Nfu/NifU [Brucella pinnipedialis B2/94] gi|261321011|ref|ZP_05960208.1| scaffold protein Nfu/NifU [Brucella ceti M644/93/1] gi|261759255|ref|ZP_06002964.1| nitrogen-fixing NifU [Brucella sp. F5/99] gi|265987868|ref|ZP_06100425.1| scaffold protein Nfu/NifU [Brucella pinnipedialis M292/94/1] gi|265997328|ref|ZP_06109885.1| scaffold protein Nfu/NifU [Brucella ceti M490/95/1] gi|225618337|gb|EEH15380.1| NifU-related protein [Brucella ceti str. Cudo] gi|260919952|gb|EEX86605.1| scaffold protein Nfu/NifU [Brucella ceti B1/94] gi|260923231|gb|EEX89799.1| scaffold protein Nfu/NifU [Brucella ceti M13/05/1] gi|261293701|gb|EEX97197.1| scaffold protein Nfu/NifU [Brucella ceti M644/93/1] gi|261296021|gb|EEX99517.1| scaffold protein Nfu/NifU [Brucella pinnipedialis B2/94] gi|261303670|gb|EEY07167.1| scaffold protein Nfu/NifU [Brucella pinnipedialis M163/99/10] gi|261739239|gb|EEY27235.1| nitrogen-fixing NifU [Brucella sp. F5/99] gi|262551796|gb|EEZ07786.1| scaffold protein Nfu/NifU [Brucella ceti M490/95/1] gi|264660065|gb|EEZ30326.1| scaffold protein Nfu/NifU [Brucella pinnipedialis M292/94/1] Length = 190 Score = 224 bits (571), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 102/190 (53%), Positives = 140/190 (73%), Gaps = 1/190 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VV+ EG F + AE SPLA+++F++PG+ V+FGYD Sbjct: 1 MFIQTETTPNPATLKFLPGKVVMPEGTADFRDPASAENTSPLAAKLFAVPGVTGVFFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K+ +W+HL+P +LG IMEHF+SG P + D F E+D+ +V+ Sbjct: 61 FITVTKEDGEWQHLKPAILGTIMEHFMSGAPAMAGNANADAAAAHSEEEFFDEADTEIVE 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+++ RVRPAVA+DGGDI F+G+ +G VFL M+GACSGCPS++ TLK+G+ N+L HF Sbjct: 121 TIKELIETRVRPAVAQDGGDITFRGFENGTVFLHMKGACSGCPSSTATLKHGIQNLLRHF 180 Query: 180 VPEVKDIRTV 189 VPEV+ + + Sbjct: 181 VPEVQQVEQI 190 >gi|115522240|ref|YP_779151.1| NifU domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115516187|gb|ABJ04171.1| nitrogen-fixing NifU domain protein [Rhodopseudomonas palustris BisA53] Length = 188 Score = 224 bits (570), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 104/192 (54%), Positives = 145/192 (75%), Gaps = 7/192 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ VL G + FS+ A SPLA R+F +PG+ V++G DF Sbjct: 1 MFIQTEPTPNPATLKFLPGRAVLDSGTMEFSDRAAAARSPLAERLFEVPGVTGVFYGLDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLG--DMKLDDMGSGDFIE-SDSAV 117 ++V KD DW+HL+P +LG IMEHF+SG+P++ +G + D DD +F E +D+ Sbjct: 61 VSVTKDDGDWQHLKPAILGAIMEHFMSGEPLMADGRVDGEDASEDD----EFFEKADTET 116 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IK++++ RVRPAVA DGGDI+F+G++DGIV+L MRGACSGCPS++ TL++G+ N+L Sbjct: 117 VVIIKDLIETRVRPAVANDGGDIIFRGFKDGIVYLHMRGACSGCPSSTATLQHGIQNLLK 176 Query: 178 HFVPEVKDIRTV 189 HFVPEV ++R + Sbjct: 177 HFVPEVVEVRPI 188 >gi|163868796|ref|YP_001610020.1| NifU-related protein [Bartonella tribocorum CIP 105476] gi|161018467|emb|CAK02025.1| NifU-related protein [Bartonella tribocorum CIP 105476] Length = 192 Score = 224 bits (570), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 99/184 (53%), Positives = 138/184 (75%), Gaps = 1/184 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VVL EG + F + +EA + SPLA+++F+IP + V+ GYD Sbjct: 1 MFIQTETTPNPATLKFLPGRVVLSEGVLEFRDREEAAKNSPLAAKLFNIPNVNGVFLGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K + +W+HL+P +LG IMEHF+S +P+I + + E D+ +V Sbjct: 61 FITVSKKEGEWQHLKPVILGTIMEHFLSNEPVITTNATTQAHAHALNEEFYDEKDADIVL 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ R+RPAVA DGGDI F+G+ +GIV+L+MRGAC+GCPS++ TLK+G+ N+L HF Sbjct: 121 TIKELLETRIRPAVANDGGDITFRGFENGIVYLNMRGACAGCPSSTATLKHGIENLLRHF 180 Query: 180 VPEV 183 +PEV Sbjct: 181 IPEV 184 >gi|17988091|ref|NP_540725.1| NifU protein [Brucella melitensis bv. 1 str. 16M] gi|256045931|ref|ZP_05448803.1| NifU protein [Brucella melitensis bv. 1 str. Rev.1] gi|260563213|ref|ZP_05833699.1| nitrogen-fixing NifU [Brucella melitensis bv. 1 str. 16M] gi|265992342|ref|ZP_06104899.1| scaffold protein Nfu/NifU [Brucella melitensis bv. 1 str. Rev.1] gi|17983843|gb|AAL52989.1| nifu protein [Brucella melitensis bv. 1 str. 16M] gi|260153229|gb|EEW88321.1| nitrogen-fixing NifU [Brucella melitensis bv. 1 str. 16M] gi|263003408|gb|EEZ15701.1| scaffold protein Nfu/NifU [Brucella melitensis bv. 1 str. Rev.1] Length = 190 Score = 224 bits (570), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 103/190 (54%), Positives = 140/190 (73%), Gaps = 1/190 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VV+ EG F + AE SPLA+++F++PG+ V+FGYD Sbjct: 1 MFIQTETTPNPATLKFLPGKVVMPEGTADFRDPASAENTSPLAAKLFAVPGVTGVFFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K+ +W+HL+P +LG IMEHF+SG P + D F E+D+ +V+ Sbjct: 61 FITVTKEDGEWQHLKPAILGTIMEHFMSGAPAMAGNANADAAAAHGEEEFFDEADTEIVE 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+++ RVRPAVA+DGGDI F+G+ +G VFL M+GACSGCPS++ TLK+GV N+L HF Sbjct: 121 TIKELIETRVRPAVAQDGGDITFRGFENGTVFLHMKGACSGCPSSTATLKHGVQNLLRHF 180 Query: 180 VPEVKDIRTV 189 VPEV+ + + Sbjct: 181 VPEVQQVEQI 190 >gi|163842411|ref|YP_001626815.1| HIRA-interacting protein 5 [Brucella suis ATCC 23445] gi|163673134|gb|ABY37245.1| HIRA-interacting protein 5 [Brucella suis ATCC 23445] Length = 190 Score = 223 bits (569), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 102/190 (53%), Positives = 140/190 (73%), Gaps = 1/190 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VV+ EG F + AE SPLA+++F++PG+ V+FGYD Sbjct: 1 MFIQTETTPNPATLKFLPGKVVMPEGTADFRDPPSAENTSPLAAKLFAVPGVTGVFFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K+ +W+HL+P +LG IMEHF+SG P + D F E+D+ +V+ Sbjct: 61 FITVTKEHGEWQHLKPAILGTIMEHFMSGAPAMAGNANADAAAAHGEEEFFDEADTEIVE 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+++ RVRPAVA+DGGDI F+G+ +G VFL M+GACSGCPS++ TLK+G+ N+L HF Sbjct: 121 TIKELIETRVRPAVAQDGGDITFRGFENGTVFLHMKGACSGCPSSTATLKHGIQNLLRHF 180 Query: 180 VPEVKDIRTV 189 VPEV+ + + Sbjct: 181 VPEVQQVEQI 190 >gi|90421987|ref|YP_530357.1| nitrogen-fixing NifU-like [Rhodopseudomonas palustris BisB18] gi|90104001|gb|ABD86038.1| nitrogen-fixing NifU-like [Rhodopseudomonas palustris BisB18] Length = 188 Score = 223 bits (569), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 103/190 (54%), Positives = 144/190 (75%), Gaps = 3/190 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKFIPG+VVL G + F++ A SPLA RIF +PG+ V++G DF Sbjct: 1 MFIQTEPTPNPATLKFIPGRVVLDSGTMEFNDRATAARSPLAERIFEVPGVTGVFYGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGL-GDMKLDDMGSGDFIESDSAVVQ 119 +TV KD DW+HL+P +LG IMEH++SG+P++ +G + GD +D F ++D+ V Sbjct: 61 VTVTKDDSDWQHLKPSILGAIMEHYMSGEPLMADGRVDGDEPSED--DEFFDKADAETVD 118 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IK++++ RVRPAVA DGGDI F+G++DGIV+L M+GACSGCPS++ TL++G+ N+L HF Sbjct: 119 MIKDLIETRVRPAVANDGGDITFRGFKDGIVYLKMQGACSGCPSSTATLQHGIQNLLKHF 178 Query: 180 VPEVKDIRTV 189 VP V ++R + Sbjct: 179 VPAVVEVRPI 188 >gi|114706882|ref|ZP_01439782.1| nitrogen fixation protein [Fulvimarina pelagi HTCC2506] gi|114537830|gb|EAU40954.1| nitrogen fixation protein [Fulvimarina pelagi HTCC2506] Length = 187 Score = 223 bits (568), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 103/188 (54%), Positives = 140/188 (74%), Gaps = 4/188 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VVL +G F++ EA + SPLA+R+F + G+ V+FG+D Sbjct: 1 MFIQTEVTPNPATLKFLPGRVVLEQGTEEFTSIDEAAQRSPLAARLFEVDGVTGVFFGFD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 F+TV KDQ DW HL+P +L +MEHF++ P++ + + G F E D V Sbjct: 61 FVTVTKDQGDWAHLKPAILAGLMEHFVANRPVMAETSAMN---SEPGEEFFDEGDKETVA 117 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+++ RVRPAVA+DGGDI F+GYRDGIV+L+MRGACSGCPS++ TLK+G+ N+L HF Sbjct: 118 TIKELIETRVRPAVAQDGGDITFRGYRDGIVYLNMRGACSGCPSSTATLKHGIQNLLRHF 177 Query: 180 VPEVKDIR 187 VPEV+++ Sbjct: 178 VPEVEEVE 185 >gi|23501052|ref|NP_697179.1| NifU-like protein [Brucella suis 1330] gi|62289118|ref|YP_220911.1| NifU-like protein [Brucella abortus bv. 1 str. 9-941] gi|82699057|ref|YP_413631.1| nitrogen-fixing NifU, C-terminal [Brucella melitensis biovar Abortus 2308] gi|148560296|ref|YP_001258173.1| NifU-like protein [Brucella ovis ATCC 25840] gi|161618129|ref|YP_001592016.1| HIRA-interacting protein 5 [Brucella canis ATCC 23365] gi|189023393|ref|YP_001934161.1| Nitrogen-fixing NifU, C-terminal [Brucella abortus S19] gi|225851675|ref|YP_002731908.1| NifU-related protein [Brucella melitensis ATCC 23457] gi|237814609|ref|ZP_04593607.1| NifU-related protein [Brucella abortus str. 2308 A] gi|254690444|ref|ZP_05153698.1| NifU-related protein [Brucella abortus bv. 6 str. 870] gi|254694934|ref|ZP_05156762.1| NifU-related protein [Brucella abortus bv. 3 str. Tulya] gi|254696564|ref|ZP_05158392.1| NifU-related protein [Brucella abortus bv. 2 str. 86/8/59] gi|254700949|ref|ZP_05162777.1| NifU-related protein [Brucella suis bv. 5 str. 513] gi|254705318|ref|ZP_05167146.1| NifU-related protein [Brucella suis bv. 3 str. 686] gi|254718357|ref|ZP_05180168.1| NifU-related protein [Brucella sp. 83/13] gi|254731477|ref|ZP_05190055.1| NifU-related protein [Brucella abortus bv. 4 str. 292] gi|256060282|ref|ZP_05450455.1| NifU-related protein [Brucella neotomae 5K33] gi|256112644|ref|ZP_05453565.1| NifU-related protein [Brucella melitensis bv. 3 str. Ether] gi|256258700|ref|ZP_05464236.1| NifU-related protein [Brucella abortus bv. 9 str. C68] gi|256264815|ref|ZP_05467347.1| nitrogen-fixing NifU [Brucella melitensis bv. 2 str. 63/9] gi|256368604|ref|YP_003106110.1| NifU-related protein [Brucella microti CCM 4915] gi|260546415|ref|ZP_05822155.1| nitrogen-fixing NifU [Brucella abortus NCTC 8038] gi|260567221|ref|ZP_05837691.1| nitrogen-fixing NifU [Brucella suis bv. 4 str. 40] gi|260755996|ref|ZP_05868344.1| scaffold protein Nfu/NifU [Brucella abortus bv. 6 str. 870] gi|260759220|ref|ZP_05871568.1| scaffold protein Nfu/NifU [Brucella abortus bv. 4 str. 292] gi|260760942|ref|ZP_05873285.1| scaffold protein Nfu/NifU [Brucella abortus bv. 2 str. 86/8/59] gi|260885016|ref|ZP_05896630.1| scaffold protein Nfu/NifU [Brucella abortus bv. 9 str. C68] gi|261215272|ref|ZP_05929553.1| scaffold protein Nfu/NifU [Brucella abortus bv. 3 str. Tulya] gi|261324254|ref|ZP_05963451.1| scaffold protein Nfu/NifU [Brucella neotomae 5K33] gi|261751468|ref|ZP_05995177.1| scaffold protein Nfu/NifU [Brucella suis bv. 5 str. 513] gi|261756030|ref|ZP_05999739.1| scaffold protein Nfu/NifU [Brucella suis bv. 3 str. 686] gi|265983318|ref|ZP_06096053.1| scaffold protein Nfu/NifU [Brucella sp. 83/13] gi|265994085|ref|ZP_06106642.1| scaffold protein Nfu/NifU [Brucella melitensis bv. 3 str. Ether] gi|297247534|ref|ZP_06931252.1| thioredoxin-like protein [Brucella abortus bv. 5 str. B3196] gi|306839588|ref|ZP_07472392.1| NifU-related protein [Brucella sp. NF 2653] gi|306842572|ref|ZP_07475223.1| NifU-related protein [Brucella sp. BO2] gi|306844409|ref|ZP_07476999.1| NifU-related protein [Brucella sp. BO1] gi|23346918|gb|AAN29094.1| NifU-related protein [Brucella suis 1330] gi|62195250|gb|AAX73550.1| NifU-related protein [Brucella abortus bv. 1 str. 9-941] gi|82615158|emb|CAJ10095.1| Nitrogen-fixing NifU, C-terminal [Brucella melitensis biovar Abortus 2308] gi|148371553|gb|ABQ61532.1| NifU-related protein [Brucella ovis ATCC 25840] gi|161334940|gb|ABX61245.1| HIRA-interacting protein 5 [Brucella canis ATCC 23365] gi|189018965|gb|ACD71687.1| Nitrogen-fixing NifU, C-terminal [Brucella abortus S19] gi|225640040|gb|ACN99953.1| NifU-related protein [Brucella melitensis ATCC 23457] gi|237789446|gb|EEP63656.1| NifU-related protein [Brucella abortus str. 2308 A] gi|255998762|gb|ACU47161.1| NifU-related protein [Brucella microti CCM 4915] gi|260096522|gb|EEW80398.1| nitrogen-fixing NifU [Brucella abortus NCTC 8038] gi|260156739|gb|EEW91819.1| nitrogen-fixing NifU [Brucella suis bv. 4 str. 40] gi|260669538|gb|EEX56478.1| scaffold protein Nfu/NifU [Brucella abortus bv. 4 str. 292] gi|260671374|gb|EEX58195.1| scaffold protein Nfu/NifU [Brucella abortus bv. 2 str. 86/8/59] gi|260676104|gb|EEX62925.1| scaffold protein Nfu/NifU [Brucella abortus bv. 6 str. 870] gi|260874544|gb|EEX81613.1| scaffold protein Nfu/NifU [Brucella abortus bv. 9 str. C68] gi|260916879|gb|EEX83740.1| scaffold protein Nfu/NifU [Brucella abortus bv. 3 str. Tulya] gi|261300234|gb|EEY03731.1| scaffold protein Nfu/NifU [Brucella neotomae 5K33] gi|261741221|gb|EEY29147.1| scaffold protein Nfu/NifU [Brucella suis bv. 5 str. 513] gi|261745783|gb|EEY33709.1| scaffold protein Nfu/NifU [Brucella suis bv. 3 str. 686] gi|262765066|gb|EEZ10987.1| scaffold protein Nfu/NifU [Brucella melitensis bv. 3 str. Ether] gi|263095225|gb|EEZ18894.1| nitrogen-fixing NifU [Brucella melitensis bv. 2 str. 63/9] gi|264661910|gb|EEZ32171.1| scaffold protein Nfu/NifU [Brucella sp. 83/13] gi|297174703|gb|EFH34050.1| thioredoxin-like protein [Brucella abortus bv. 5 str. B3196] gi|306275222|gb|EFM56972.1| NifU-related protein [Brucella sp. BO1] gi|306287428|gb|EFM58908.1| NifU-related protein [Brucella sp. BO2] gi|306405286|gb|EFM61561.1| NifU-related protein [Brucella sp. NF 2653] gi|326408161|gb|ADZ65226.1| Nitrogen-fixing NifU, C-terminal protein [Brucella melitensis M28] gi|326537871|gb|ADZ86086.1| NifU-related protein [Brucella melitensis M5-90] Length = 190 Score = 223 bits (568), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 102/190 (53%), Positives = 140/190 (73%), Gaps = 1/190 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VV+ EG F + AE SPLA+++F++PG+ V+FGYD Sbjct: 1 MFIQTETTPNPATLKFLPGKVVMPEGTADFRDPASAENTSPLAAKLFAVPGVTGVFFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K+ +W+HL+P +LG IMEHF+SG P + D F E+D+ +V+ Sbjct: 61 FITVTKEDGEWQHLKPAILGTIMEHFMSGAPAMAGNANADAAAAHGEEEFFDEADTEIVE 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+++ RVRPAVA+DGGDI F+G+ +G VFL M+GACSGCPS++ TLK+G+ N+L HF Sbjct: 121 TIKELIETRVRPAVAQDGGDITFRGFENGTVFLHMKGACSGCPSSTATLKHGIQNLLRHF 180 Query: 180 VPEVKDIRTV 189 VPEV+ + + Sbjct: 181 VPEVQQVEQI 190 >gi|146337209|ref|YP_001202257.1| putative nifU protein (C-terminal fragment) [Bradyrhizobium sp. ORS278] gi|146190015|emb|CAL74007.1| putative nifU protein (C-terminal fragment) [Bradyrhizobium sp. ORS278] Length = 189 Score = 223 bits (567), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 100/187 (53%), Positives = 141/187 (75%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKFIPG+VVL G + F++ A SPLA R+F++ G+ V++G DF Sbjct: 1 MFIQTEATPNPATLKFIPGRVVLPAGTMEFASRDAAARSPLAERLFAVDGVTGVFYGADF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ITV K +W+HL+P +LG IMEH++SG P++ +G + D F E+D+ V Sbjct: 61 ITVTKSDGEWQHLKPAILGAIMEHYMSGAPLLADGSAANDASADEDDEFFDEADTETVGM 120 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IK+++++RVRPAVA DGGDI F+G++DGIV+L+M+GACSGCPS++ TL++G+ N+L HFV Sbjct: 121 IKDLIESRVRPAVANDGGDITFRGFKDGIVYLNMKGACSGCPSSTATLQHGIQNLLKHFV 180 Query: 181 PEVKDIR 187 PEV ++R Sbjct: 181 PEVVEVR 187 >gi|298293916|ref|YP_003695855.1| Scaffold protein Nfu/NifU [Starkeya novella DSM 506] gi|296930427|gb|ADH91236.1| Scaffold protein Nfu/NifU [Starkeya novella DSM 506] Length = 184 Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 104/192 (54%), Positives = 138/192 (71%), Gaps = 11/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ VL G +A EA SPLA+R+F +PG+ V+FG DF Sbjct: 1 MFIQTEATPNPATLKFLPGRTVLGHGTFEARDADEASRSPLAARLFEVPGVTGVFFGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD---FIESDSAV 117 +TV K++ +W HL+P +LG IMEHF+SG P++ D D F E D+ V Sbjct: 61 VTVTKEKGEWAHLKPAILGAIMEHFVSGQPVLPE--------DHAHVADDAFFEEKDAGV 112 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V I+E++D RVRPAVA DGGDI F+GY+DG+VFL+M+G+CSGCPS++ TLK G+ N+L Sbjct: 113 VDTIRELIDTRVRPAVANDGGDITFRGYKDGVVFLAMKGSCSGCPSSTATLKNGIENLLR 172 Query: 178 HFVPEVKDIRTV 189 HFVP+V ++R V Sbjct: 173 HFVPDVVEVRPV 184 >gi|294851540|ref|ZP_06792213.1| thioredoxin-like protein [Brucella sp. NVSL 07-0026] gi|294820129|gb|EFG37128.1| thioredoxin-like protein [Brucella sp. NVSL 07-0026] Length = 190 Score = 221 bits (564), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 102/190 (53%), Positives = 139/190 (73%), Gaps = 1/190 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VV+ EG F + AE SPLA+++F +PG+ V+FGYD Sbjct: 1 MFIQTETTPNPATLKFLPGKVVMPEGTADFRDPASAENTSPLAAKLFVVPGVTGVFFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K+ +W+HL+P +LG IMEHF+SG P + D F E+D+ +V+ Sbjct: 61 FITVTKEDGEWQHLKPAILGTIMEHFMSGAPAMAGNANADAAAAHGEEEFFDEADTEIVE 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+++ RVRPAVA+DGGDI F+G+ +G VFL M+GACSGCPS++ TLK+G+ N+L HF Sbjct: 121 TIKELIETRVRPAVAQDGGDITFRGFENGTVFLHMKGACSGCPSSTATLKHGIQNLLRHF 180 Query: 180 VPEVKDIRTV 189 VPEV+ + + Sbjct: 181 VPEVQQVEQI 190 >gi|319898609|ref|YP_004158702.1| NifU-related protein [Bartonella clarridgeiae 73] gi|319402573|emb|CBI76118.1| NifU-related protein [Bartonella clarridgeiae 73] Length = 196 Score = 221 bits (564), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 99/184 (53%), Positives = 138/184 (75%), Gaps = 1/184 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNP TLKF+PG +VL +G + F N +EA + SPLA+++F+IP + SV+ GYD Sbjct: 1 MFIQTESTPNPTTLKFLPGCIVLPQGVLEFYNREEAAKNSPLAAKLFNIPNVKSVFLGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FIT+ K+ +W+HL+P +LG IMEHF+S DP+I + + + F E D+ +V Sbjct: 61 FITITKNDGEWQHLKPAILGTIMEHFLSNDPVITTNVITQTEAHMLDKEFFDEKDADIVV 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ R+RPAVA DGGDI F G+ +GIV+L+MRGAC+GCPS++ TLK+G+ N+L HF Sbjct: 121 VIKELLETRIRPAVANDGGDITFCGFENGIVYLNMRGACAGCPSSTATLKHGIENLLRHF 180 Query: 180 VPEV 183 +PEV Sbjct: 181 IPEV 184 >gi|154245767|ref|YP_001416725.1| scaffold protein Nfu/NifU [Xanthobacter autotrophicus Py2] gi|154159852|gb|ABS67068.1| Scaffold protein Nfu/NifU [Xanthobacter autotrophicus Py2] Length = 186 Score = 221 bits (564), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 101/190 (53%), Positives = 144/190 (75%), Gaps = 5/190 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ VL EG + + +A++SPLA R+F + G+A+V+ G DF Sbjct: 1 MFIQTETTPNPATLKFLPGRSVLGEGTLDLRSHDDADLSPLAQRLFDVRGVAAVFLGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIES-DSAVVQ 119 +TV K + +W ++P +LG IMEHF+SG P++ +G +K + + +F E+ D+ +V Sbjct: 61 VTVTKAEAEWPQIKPAILGAIMEHFMSGAPVLSDG----VKPEVADADEFYEAKDAEIVA 116 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+LD RVRPAVA DGGDI F+G++DGIVFL+M+G+CSGCPS++ TLK G+ N+L HF Sbjct: 117 TIKELLDTRVRPAVANDGGDITFRGFKDGIVFLNMKGSCSGCPSSTATLKNGIENLLKHF 176 Query: 180 VPEVKDIRTV 189 VPEV +++ V Sbjct: 177 VPEVTEVQAV 186 >gi|220924300|ref|YP_002499602.1| Scaffold protein Nfu/NifU [Methylobacterium nodulans ORS 2060] gi|219948907|gb|ACL59299.1| Scaffold protein Nfu/NifU [Methylobacterium nodulans ORS 2060] Length = 187 Score = 221 bits (562), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 101/191 (52%), Positives = 140/191 (73%), Gaps = 6/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP TLKF+PG+VVL EG + +A SPLA +F++PG+A VYFG+DF Sbjct: 1 MFIQTEATPNPTTLKFLPGRVVLTEGTFEARSPDQAARSPLAQALFAVPGVAGVYFGHDF 60 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 I+V K D +W ++P VLG IMEHF+SG P++ G G+ ++ F E+D+ V Sbjct: 61 ISVTKAEDGPEWPQVKPAVLGAIMEHFLSGAPVLEAGAAGEGTSEEF----FEEADADTV 116 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IK++L+ RVRPAVA DGGDI F+GYR+G+V+L M+GACSGCPS++ TL+ GV N+ H Sbjct: 117 ATIKDLLETRVRPAVAGDGGDITFRGYREGVVYLEMKGACSGCPSSTATLRQGVQNLFRH 176 Query: 179 FVPEVKDIRTV 189 F+PEV+++++V Sbjct: 177 FLPEVREVQSV 187 >gi|163757734|ref|ZP_02164823.1| hypothetical protein HPDFL43_20027 [Hoeflea phototrophica DFL-43] gi|162285236|gb|EDQ35518.1| hypothetical protein HPDFL43_20027 [Hoeflea phototrophica DFL-43] Length = 187 Score = 221 bits (562), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 102/190 (53%), Positives = 139/190 (73%), Gaps = 4/190 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VV+ G F +A+EA S LA ++F IPG+ V++GYD Sbjct: 1 MFIQTESTPNPATLKFLPGKVVMQSGTADFRDAEEAGATSQLAGKLFGIPGVIGVFYGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FIT+ KD DW+HL+P +LG IMEHF+SG P++ + ++ D +V Sbjct: 61 FITITKDDADWQHLKPAILGTIMEHFMSGAPVMSGPVGEVPEGEEEFF---ESGDETIVA 117 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L++RVRPAVA+DGGDI F+G+RDG VFL M+GAC+GCPS++ TLK+G+ N+L HF Sbjct: 118 TIKELLESRVRPAVAQDGGDITFRGFRDGKVFLHMKGACAGCPSSTATLKHGIQNLLRHF 177 Query: 180 VPEVKDIRTV 189 VPEV+++ V Sbjct: 178 VPEVREVEAV 187 >gi|299133388|ref|ZP_07026583.1| Scaffold protein Nfu/NifU [Afipia sp. 1NLS2] gi|298593525|gb|EFI53725.1| Scaffold protein Nfu/NifU [Afipia sp. 1NLS2] Length = 187 Score = 220 bits (561), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 101/187 (54%), Positives = 138/187 (73%), Gaps = 2/187 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ VL G + F++ A SPLA ++F IPG+ V++G DF Sbjct: 1 MFIQTETTPNPATLKFLPGRTVLDSGTMEFTSRDSAARSPLAVKLFEIPGVTGVFYGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +TV KD DW+HL+P +LG IMEH++SG PI+ +G D F E+D+ V Sbjct: 61 VTVTKDDGDWQHLKPAILGTIMEHYMSGGPILADGAQPDAG--PHAEEFFNEADAETVGI 118 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IK++L+ RVRPAVA DGGDI F+G++DGIVFL M+G+CSGCPS++ TLK+G+ N+L H+V Sbjct: 119 IKDILETRVRPAVASDGGDITFRGFKDGIVFLDMKGSCSGCPSSTATLKHGIQNLLKHYV 178 Query: 181 PEVKDIR 187 P+V ++R Sbjct: 179 PDVVEVR 185 >gi|319405374|emb|CBI78993.1| NifU-related protein [Bartonella sp. AR 15-3] Length = 190 Score = 219 bits (558), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 102/184 (55%), Positives = 141/184 (76%), Gaps = 7/184 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE+TPNP TLKF+PG++VL +G + F N +EA + SPLA+++F+IP I SV+ GYD Sbjct: 1 MFIQTENTPNPTTLKFLPGRIVLSQGVLEFHNREEAAKNSPLAAKLFNIPNIKSVFLGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FIT+ K+ +W+HL+P +LG IMEHF+S DP+I ++ + D D E D+ +V Sbjct: 61 FITITKNDGEWKHLKPAILGTIMEHFLSNDPVITT----EVHISDKEFFD--EKDTDIVV 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ RVRPAVA DGGDI F G+ +GIV+L+MRGAC+GCPS++ TLK+G+ N+L HF Sbjct: 115 VIKELLETRVRPAVANDGGDITFCGFANGIVYLNMRGACAGCPSSTATLKHGIENLLRHF 174 Query: 180 VPEV 183 +PEV Sbjct: 175 IPEV 178 >gi|49474596|ref|YP_032638.1| hypothetical protein BQ10720 [Bartonella quintana str. Toulouse] gi|49240100|emb|CAF26539.1| hypothetical protein BQ10720 [Bartonella quintana str. Toulouse] Length = 192 Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 100/184 (54%), Positives = 134/184 (72%), Gaps = 1/184 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VVL +G + F N++EA + SPLA+++F+IP + V GYD Sbjct: 1 MFIQTETTPNPATLKFLPGRVVLSKGVLEFRNSEEAAKNSPLAAKLFNIPNVNGVLLGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K +W+HL+P +LG IMEHF+S P+I + + + E D +V Sbjct: 61 FITVSKKDGEWQHLKPAILGTIMEHFLSDAPVIKTNATIQAQTHALNEEFYDEKDVDIVS 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ RVRPAVA DGGDI F G+ +GIV+L+MRGAC+GCPS++ TLK G+ N+L HF Sbjct: 121 TIKELLETRVRPAVANDGGDITFCGFENGIVYLNMRGACAGCPSSTATLKTGIENLLRHF 180 Query: 180 VPEV 183 +PEV Sbjct: 181 IPEV 184 >gi|319406947|emb|CBI80584.1| NifU-related protein [Bartonella sp. 1-1C] Length = 190 Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 101/184 (54%), Positives = 138/184 (75%), Gaps = 7/184 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNP TLKF+PG++VL +G + F N +EA + SPLA+++F+IP I SV+ GYD Sbjct: 1 MFIQTESTPNPTTLKFLPGRIVLPQGTLEFHNREEAAKNSPLAAKLFNIPNIKSVFLGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FIT+ K+ +W+HL+P +LG IMEHF+S DP+I + + F E D+ +V Sbjct: 61 FITITKNDGEWQHLKPAILGTIMEHFLSNDPVI------TTETNIPNKEFFDEKDTDIVI 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ RVRPAVA DGGDI F G+ +GIV+L+MRGAC+GCPS++ TLK+G+ N+L HF Sbjct: 115 VIKELLETRVRPAVANDGGDITFCGFENGIVYLNMRGACAGCPSSTATLKHGIENLLRHF 174 Query: 180 VPEV 183 +PEV Sbjct: 175 IPEV 178 >gi|304393809|ref|ZP_07375734.1| putative NFU1 iron-sulfur cluster scaffold-like protein [Ahrensia sp. R2A130] gi|303294008|gb|EFL88383.1| putative NFU1 iron-sulfur cluster scaffold-like protein [Ahrensia sp. R2A130] Length = 190 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 104/192 (54%), Positives = 143/192 (74%), Gaps = 6/192 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PGQ V G FS+A +AE SPLA+ +F+IP ++ V+FGYD Sbjct: 1 MFIQTEATPNPATLKFLPGQTVAENGPFEFSDAVDAEDRSPLAAGLFAIPSVSGVFFGYD 60 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA-V 117 F+T+ K D DW+H++P VLG+IMEHF+SG P+++ G ++ G F+E S + Sbjct: 61 FVTITKNDTADWQHVKPAVLGVIMEHFMSGAPVMNADAAGGTEVAPEG---FVEEGSEEI 117 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IKE+L+ RVRPAVA+DGGDI F G++DG V+L MRGAC+GCPS++ TL++G+ N+L Sbjct: 118 VSTIKELLETRVRPAVAQDGGDITFHGFKDGRVYLKMRGACAGCPSSTATLQHGIQNLLK 177 Query: 178 HFVPEVKDIRTV 189 HF+PEV+ + V Sbjct: 178 HFIPEVEAVEAV 189 >gi|312113945|ref|YP_004011541.1| Scaffold protein Nfu/NifU [Rhodomicrobium vannielii ATCC 17100] gi|311219074|gb|ADP70442.1| Scaffold protein Nfu/NifU [Rhodomicrobium vannielii ATCC 17100] Length = 184 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 105/190 (55%), Positives = 144/190 (75%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+ VL EG F + +AE +SPLA+R+F + G+ +V+ G D Sbjct: 1 MFIQTEMTPNPATLKFLPGRTVLEEGTREFLTSDDAEGVSPLAARLFEVEGVTAVFLGSD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 F++V KD+ DWE L+PPVLG+IMEHF+SG P++ + + DF ++D VV Sbjct: 61 FVSVTKDRGDWESLKPPVLGVIMEHFMSGQPVLSD------ERHVAEDEDFDDADKEVVT 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+++ RVRPAVA DGGDI FKG+RDG+V+L M+GACSGCPSA+ TL++G+ N+L HF Sbjct: 115 TIKELIETRVRPAVANDGGDITFKGFRDGVVYLKMQGACSGCPSATATLRHGIENLLKHF 174 Query: 180 VPEVKDIRTV 189 VPEV++++ V Sbjct: 175 VPEVQEVQPV 184 >gi|126740480|ref|ZP_01756167.1| nifU domain protein [Roseobacter sp. SK209-2-6] gi|126718281|gb|EBA14996.1| nifU domain protein [Roseobacter sp. SK209-2-6] Length = 187 Score = 218 bits (556), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 101/190 (53%), Positives = 137/190 (72%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F NA+ AE SPLA R+F+ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLETGTADFPNAEAAENSPLAQRVFAAAGVTGVFFGNDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + +W+H++P +LG IMEHF SG P+++ GG G + D+ VV Sbjct: 61 VTVTKSEDVEWDHIKPAILGAIMEHFQSGQPVLNAGGA-----QSSGHAEHSGEDAEVVN 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IK++LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKDLLDSRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|316931562|ref|YP_004106544.1| Scaffold protein Nfu/NifU [Rhodopseudomonas palustris DX-1] gi|315599276|gb|ADU41811.1| Scaffold protein Nfu/NifU [Rhodopseudomonas palustris DX-1] Length = 188 Score = 218 bits (555), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 100/187 (53%), Positives = 141/187 (75%), Gaps = 2/187 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKFIPG+ VL G + F++A +A SPLA+R+F I G++ V++G DF Sbjct: 1 MFIQTEPTPNPATLKFIPGRSVLDSGTLEFTDAAQAARSPLAARLFDIDGVSGVFYGADF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +TV KD+ +W+HL+P +LG IMEH++SG PI+ D + E D+ V+ Sbjct: 61 VTVTKDRGEWQHLKPAILGAIMEHYMSGAPIL--ADGKSDGDDGDDDEFYAEGDAETVEI 118 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IK++++ RVRPAVA DGGDI F+G++DGIV+L+MRGAC+GCPS++ TL++G+ N+L HFV Sbjct: 119 IKDLIETRVRPAVANDGGDITFRGFKDGIVYLNMRGACAGCPSSTATLQHGIQNLLKHFV 178 Query: 181 PEVKDIR 187 PEV ++R Sbjct: 179 PEVVEVR 185 >gi|319403933|emb|CBI77521.1| NifU-related protein [Bartonella rochalimae ATCC BAA-1498] Length = 190 Score = 217 bits (553), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 100/185 (54%), Positives = 140/185 (75%), Gaps = 9/185 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNP TLKF+PG++VL +G + F N +EA + SPLA+++F+IP I SV+ GYD Sbjct: 1 MFIQTESTPNPTTLKFLPGRIVLPQGTLEFHNREEAAKNSPLAAKLFNIPNIKSVFLGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI-ESDSAVV 118 FIT+ K+ +W+HL+P +LG IME+F+S DP+I ++ + +F E D+ +V Sbjct: 61 FITITKNDGEWQHLKPAILGTIMEYFLSNDPVITTEA-------NLPNKEFFDEKDTDIV 113 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+L+ RVRPAVA DGGDI F G+ +GIV+L+MRGAC+GCPS++ TLK+G+ N+L H Sbjct: 114 VVIKELLETRVRPAVANDGGDITFCGFENGIVYLNMRGACAGCPSSTATLKHGIENLLRH 173 Query: 179 FVPEV 183 F+PEV Sbjct: 174 FIPEV 178 >gi|209883678|ref|YP_002287535.1| nitrogen-fixing NifU domain protein [Oligotropha carboxidovorans OM5] gi|209871874|gb|ACI91670.1| nitrogen-fixing NifU domain protein [Oligotropha carboxidovorans OM5] Length = 187 Score = 217 bits (552), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 98/187 (52%), Positives = 138/187 (73%), Gaps = 2/187 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG++V+ G + F++ SPLA+++F IPG+ V++ DF Sbjct: 1 MFIQTEATPNPATLKFLPGRLVIESGTMEFTDRDSTARSPLAAKLFDIPGVTGVFYSSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ITV K + DW+HL+P +LG IMEH++SG PI+ +G D F E+D+ V Sbjct: 61 ITVTKGEGDWQHLKPAILGTIMEHYMSGAPILADGAKPDAG--PHAEEFFNEADAETVTI 118 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IK++++ RVRPAVA DGGDI F+G++DGIVFL M+G+CSGCPS++ TLK+G+ N+L HFV Sbjct: 119 IKDIIETRVRPAVASDGGDITFRGFKDGIVFLDMKGSCSGCPSSTATLKHGIQNLLKHFV 178 Query: 181 PEVKDIR 187 P+V ++R Sbjct: 179 PDVVEVR 185 >gi|260426420|ref|ZP_05780399.1| scaffold protein Nfu/NifU [Citreicella sp. SE45] gi|260420912|gb|EEX14163.1| scaffold protein Nfu/NifU [Citreicella sp. SE45] Length = 185 Score = 216 bits (551), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 104/190 (54%), Positives = 134/190 (70%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F NA A+ SPLA R+FS+ G+ V+ G DF Sbjct: 1 MFIQTESTPNPATLKFLPGQAVLGAGTADFPNADGADASPLARRLFSVTGVTGVFLGSDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV KD DW+H++P VLG IMEHF SGDP++ G G F D +V Sbjct: 61 VTVTKDDGADWDHVKPAVLGAIMEHFQSGDPVMAGEG------GSSGHAAFDGEDKEIVG 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 115 QIKELLDSRVRPAVAQDGGDITFHGFERGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 175 IPEVTEVRPV 184 >gi|260431494|ref|ZP_05785465.1| NifU domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415322|gb|EEX08581.1| NifU domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 187 Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 102/190 (53%), Positives = 135/190 (71%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F A+ AE SPLA RIF++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEAGTADFPTAEAAENSPLAKRIFAVKGVTGVFFGNDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV KD W+H++P +LG +MEH+ SG PI +GD G + DS +V Sbjct: 61 VTVTKDDDVQWDHIKPAILGAVMEHYQSGQPI-----MGDGADAASGHAEHTGEDSEIVN 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDSRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|158426327|ref|YP_001527619.1| nitrogen-fixing protein [Azorhizobium caulinodans ORS 571] gi|158333216|dbj|BAF90701.1| nitrogen-fixing protein [Azorhizobium caulinodans ORS 571] Length = 186 Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 99/189 (52%), Positives = 136/189 (71%), Gaps = 3/189 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ VL +G + + EA SPL R+F + G+ V+ G DF Sbjct: 1 MFIQTEATPNPATLKFLPGRTVLGDGTLEARSPAEAGRSPLVQRLFEVKGVGGVFLGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +TV K DW H++P +LG IMEHF+SG P++ +G D + G F E+D +V Sbjct: 61 VTVTKTDGDWAHMKPAILGAIMEHFMSGAPVLADGVAAD---QEDGEEFFNEADEEIVGT 117 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+++ RVRPAVA DGGDI F+G+R+G+V+L+M+G+CSGCPS++ TLK G+ N+L HFV Sbjct: 118 IKELIETRVRPAVAADGGDITFRGFREGVVYLNMKGSCSGCPSSTATLKNGIENLLRHFV 177 Query: 181 PEVKDIRTV 189 PEV ++R V Sbjct: 178 PEVNEVRPV 186 >gi|121601928|ref|YP_989428.1| NifU family protein [Bartonella bacilliformis KC583] gi|120614105|gb|ABM44706.1| NifU family protein [Bartonella bacilliformis KC583] Length = 192 Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 97/184 (52%), Positives = 133/184 (72%), Gaps = 1/184 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEI-SPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+V+L EG + F +++ A + SPLA+++F I ++ V GYD Sbjct: 1 MFIQTETTPNPATLKFLPGRVILSEGVLEFRDSEAAALGSPLAAKLFQISNVSGVLLGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K +W+HL+P +LG IMEH +S PI+ G + + E D+ +V Sbjct: 61 FITVTKSDGEWQHLKPVILGTIMEHLLSNAPIVSTGAAAHAQSHTHNEEFYDEKDADIVS 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ RVRPAVA DGGDI F+G+ GIV+L+MRGAC+GCPS++ TLK+G+ N+L HF Sbjct: 121 TIKELLETRVRPAVANDGGDITFRGFEHGIVYLNMRGACAGCPSSTATLKHGIENLLRHF 180 Query: 180 VPEV 183 +PEV Sbjct: 181 IPEV 184 >gi|254461257|ref|ZP_05074673.1| NifU domain protein [Rhodobacterales bacterium HTCC2083] gi|206677846|gb|EDZ42333.1| NifU domain protein [Rhodobacteraceae bacterium HTCC2083] Length = 188 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 102/190 (53%), Positives = 138/190 (72%), Gaps = 5/190 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A A++SPLA+RIF++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEMGTADFPSAVGADVSPLAARIFAVEGVTGVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+H++P +LG IMEHF SG ++ GDM + G + D +V Sbjct: 61 VTVTKADAVEWDHIKPALLGAIMEHFQSGAAVM----AGDMAPPNSGHAEHTGEDGEIVV 116 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ GIV+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 117 QIKELLDSRVRPAVAQDGGDITFHGFERGIVYLHMQGACAGCPSSTLTLKMGIENLLRHY 176 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 177 IPEVTEVRPV 186 >gi|99078069|ref|YP_611327.1| nitrogen-fixing NifU-like [Ruegeria sp. TM1040] gi|99035207|gb|ABF62065.1| nitrogen-fixing NifU-like protein [Ruegeria sp. TM1040] Length = 187 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 100/190 (52%), Positives = 136/190 (71%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A SPLA RIF++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLDAGTADFPSAEAASKSPLAQRIFAVSGVTGVFFGNDF 60 Query: 61 ITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV KD +W+H++P VLG +MEH+ SG P+I+ G + G + D +V Sbjct: 61 VTVTKDDSVEWDHIKPAVLGAVMEHYQSGQPVINEG-----QQQASGHAEHTGEDGEIVN 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDSRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|149202972|ref|ZP_01879943.1| nitrogen-fixing NifU-like protein [Roseovarius sp. TM1035] gi|149143518|gb|EDM31554.1| nitrogen-fixing NifU-like protein [Roseovarius sp. TM1035] Length = 187 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 101/190 (53%), Positives = 140/190 (73%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+++ SPLA RIF +PG++ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEAGTADFPSAEKSGSSPLAERIFRVPGVSGVFFGNDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + +W+H++P +LG IMEH+ SG P++ LG+ + G + DSA+V Sbjct: 61 VTVTKGEAIEWDHIKPAILGAIMEHYQSGQPVM----LGESAVAS-GHAEHTGEDSAIVN 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDTRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTITLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|294678745|ref|YP_003579360.1| NifU domain-containing protein [Rhodobacter capsulatus SB 1003] gi|294477565|gb|ADE86953.1| NifU domain protein [Rhodobacter capsulatus SB 1003] Length = 188 Score = 216 bits (549), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 97/190 (51%), Positives = 135/190 (71%), Gaps = 5/190 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG V+ EG F++ + A++SPLA RIF + G+ +V+ G DF Sbjct: 1 MFIQTETTPNPATLKFLPGLDVMPEGVADFTSVEAAQVSPLAGRIFRVAGVKAVFLGADF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV KD+ +W H RP ++G IMEH+ SG P++ G +G+ D A++ Sbjct: 61 VTVTKDEATEWAHARPAIMGAIMEHYQSGQPVLMGAAAGGHTTGGADTGE----DGAIIS 116 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVARDGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 117 QIKELLDTRVRPAVARDGGDITFHGFEKGVVYLHMQGACAGCPSSTYTLKMGIENLLRHY 176 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 177 IPEVSEVRAV 186 >gi|86138949|ref|ZP_01057520.1| nifU domain protein [Roseobacter sp. MED193] gi|85824180|gb|EAQ44384.1| nifU domain protein [Roseobacter sp. MED193] Length = 187 Score = 216 bits (549), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 101/190 (53%), Positives = 139/190 (73%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A SPLA+RIF++ G+A V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLDAGTADFPSAETAGSSPLATRIFAVSGVAGVFFGNDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+H++P +LG IMEH+ SG PI++ GG G + +S +V Sbjct: 61 VTVTKSDSVEWDHIKPAILGAIMEHYQSGQPIVNAGGE-----QSSGHAEHSGENSEIVD 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IK++LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKDLLDSRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|254474955|ref|ZP_05088341.1| NifU domain protein [Ruegeria sp. R11] gi|214029198|gb|EEB70033.1| NifU domain protein [Ruegeria sp. R11] Length = 187 Score = 216 bits (549), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 101/190 (53%), Positives = 135/190 (71%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A SPLA RIF++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEMGTADFPSAEAAGSSPLAQRIFAVSGVTGVFFGNDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+H++P +LG +MEHF SG P+I GG G + D +V Sbjct: 61 VTVTKADGVEWDHIKPAILGAVMEHFQSGQPVISEGGE-----QTSGHAEHTGEDGEIVN 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDSRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|83949998|ref|ZP_00958731.1| nifU domain protein [Roseovarius nubinhibens ISM] gi|83837897|gb|EAP77193.1| nifU domain protein [Roseovarius nubinhibens ISM] Length = 188 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 103/190 (54%), Positives = 138/190 (72%), Gaps = 5/190 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A SPLA RIF I G+ V+FG+DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLDAGTADFPSAEAAGKSPLAERIFKIAGVTGVFFGHDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV KD+ +W+H++P +LG IMEHF SG P++ + G GD + G + D +V Sbjct: 61 VTVTKDEGTEWDHVKPAILGAIMEHFQSGKPVMLDAG-GDPQ---SGHAEHTGEDGEIVN 116 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 117 QIKELLDTRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTITLKMGIENLLRHY 176 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 177 IPEVTEVRPV 186 >gi|163738966|ref|ZP_02146379.1| nitrogen-fixing NifU-like protein [Phaeobacter gallaeciensis BS107] gi|163741789|ref|ZP_02149179.1| nifU domain protein [Phaeobacter gallaeciensis 2.10] gi|161384962|gb|EDQ09341.1| nifU domain protein [Phaeobacter gallaeciensis 2.10] gi|161387771|gb|EDQ12127.1| nitrogen-fixing NifU-like protein [Phaeobacter gallaeciensis BS107] Length = 187 Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 101/190 (53%), Positives = 133/190 (70%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F A A SPLA RIF++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEMGTADFPTADAAGSSPLAQRIFAVSGVTGVFFGNDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+H++P +LG +MEHF SG P+I GG G + D +V Sbjct: 61 VTVTKADTVEWDHIKPAILGAVMEHFQSGQPVISEGGE-----QTSGHAEHTGEDGEIVN 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDSRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|259415063|ref|ZP_05738985.1| NifU domain protein [Silicibacter sp. TrichCH4B] gi|259348973|gb|EEW60727.1| NifU domain protein [Silicibacter sp. TrichCH4B] Length = 187 Score = 215 bits (547), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 100/190 (52%), Positives = 135/190 (71%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A SPLA RIF++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLDAGTADFPSAEAASKSPLAQRIFAVSGVTGVFFGNDF 60 Query: 61 ITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV KD +W+H++P VLG +MEH+ SG P+I G + G + D +V Sbjct: 61 VTVTKDDSVEWDHIKPAVLGAVMEHYQSGQPVIDEG-----QQQASGHAEHTGEDGEIVN 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDSRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|85705721|ref|ZP_01036818.1| nifU domain protein [Roseovarius sp. 217] gi|85669711|gb|EAQ24575.1| nifU domain protein [Roseovarius sp. 217] Length = 187 Score = 214 bits (546), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 102/190 (53%), Positives = 136/190 (71%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F A+ AE SPLA RIF +PG++ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLDAGTADFPTAEGAEKSPLAERIFRVPGVSGVFFGNDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + +W+H++P +LG IMEH+ SG P++ G G G + DS +V Sbjct: 61 VTVTKGEATEWDHIKPAILGAIMEHYQSGQPVMLGEGGGAS-----GHAEHSGEDSEIVN 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDTRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTITLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|300024980|ref|YP_003757591.1| Scaffold protein Nfu/NifU [Hyphomicrobium denitrificans ATCC 51888] gi|299526801|gb|ADJ25270.1| Scaffold protein Nfu/NifU [Hyphomicrobium denitrificans ATCC 51888] Length = 184 Score = 214 bits (546), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 102/189 (53%), Positives = 131/189 (69%), Gaps = 5/189 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKFIPG+ VL G F EA SPLA+R+F+I G+ V+ G DF Sbjct: 1 MFIQTEATPNPATLKFIPGRDVLAGGTADFRTRNEAVASPLATRLFAIDGVDGVFLGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 I+V K +W+HL+P VLG IMEH++SG P+ + +D G+ + D A V Sbjct: 61 ISVTKGNVEWQHLKPMVLGAIMEHYMSGAPVSD-----EEDSNDEGAESYDPEDEATVTT 115 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+L+ RVRPAVA+DGGDI F G+RDG+V+L MRGACSGCPS++ TL+ G+ N+L HF Sbjct: 116 IKELLETRVRPAVAQDGGDITFSGFRDGVVYLHMRGACSGCPSSTATLRNGIENLLKHFC 175 Query: 181 PEVKDIRTV 189 PEV + V Sbjct: 176 PEVTSVEAV 184 >gi|163734126|ref|ZP_02141567.1| NifU-like domain protein [Roseobacter litoralis Och 149] gi|161392662|gb|EDQ16990.1| NifU-like domain protein [Roseobacter litoralis Och 149] Length = 187 Score = 214 bits (546), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 103/190 (54%), Positives = 135/190 (71%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A+ SPLA RIF+I G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEMGTADFPSAETADKSPLAERIFAIEGVTGVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D DW+H++P +LG IMEHF SG P++ GD G + D +V Sbjct: 61 VTVTKADSVDWDHIKPGLLGAIMEHFQSGQPVM----AGD-HTPTSGHAEHTGEDGVIVN 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDTRVRPAVAQDGGDITFHGFERGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|110678955|ref|YP_681962.1| NifU-like domain-containing protein [Roseobacter denitrificans OCh 114] gi|109455071|gb|ABG31276.1| NifU-like domain protein [Roseobacter denitrificans OCh 114] Length = 187 Score = 214 bits (545), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 101/190 (53%), Positives = 135/190 (71%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A+ SPLA R+F++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEMGTADFPSAETADKSPLAERVFAVEGVTGVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D DW+H++P +LG IMEHF SG P++ GD G + D +V Sbjct: 61 VTVTKADNVDWDHIKPALLGAIMEHFQSGQPVM----AGD-HTPTSGHAEHTGDDGVIVN 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDTRVRPAVAQDGGDITFHGFERGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|310815348|ref|YP_003963312.1| NifU domain protein [Ketogulonicigenium vulgare Y25] gi|308754083|gb|ADO42012.1| NifU domain protein [Ketogulonicigenium vulgare Y25] Length = 185 Score = 214 bits (544), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 101/190 (53%), Positives = 134/190 (70%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A SPLA R+F++ G+ V+ GYDF Sbjct: 1 MFIQTESTPNPATLKFLPGQQVLELGTADFPSAEAATTSPLAKRLFAVDGVTGVFLGYDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV K D +W HL+P VLG IMEHF SG P++ + + D D A+V+ Sbjct: 61 ITVTKTDNLEWPHLKPAVLGAIMEHFQSGQPVMEGEAVSAHRAHD-------GEDGAIVE 113 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+G+C+GCPS++ TLK G+ N+L H+ Sbjct: 114 QIKELLDTRVRPAVAQDGGDITFHGFDRGVVYLHMQGSCAGCPSSTLTLKMGIENLLRHY 173 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 174 IPEVLEVRPV 183 >gi|126725029|ref|ZP_01740872.1| nifU domain protein [Rhodobacterales bacterium HTCC2150] gi|126706193|gb|EBA05283.1| nifU domain protein [Rhodobacterales bacterium HTCC2150] Length = 187 Score = 213 bits (543), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 102/190 (53%), Positives = 134/190 (70%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A+ SPLA+RIF I GIA V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLETGTADFPSAETADQSPLATRIFGIQGIAGVFFGNDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + +W+H++P +LG IMEHF SG P++ + E D +V Sbjct: 61 VTVTKAENSEWDHIKPAILGAIMEHFQSGQPVLSGENTAPAHAEAAN-----EEDKEIVG 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ GIV+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDTRVRPAVAQDGGDITFHGFDRGIVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVVEVRPV 185 >gi|89053356|ref|YP_508807.1| nitrogen-fixing NifU-like [Jannaschia sp. CCS1] gi|88862905|gb|ABD53782.1| nitrogen-fixing NifU-like protein [Jannaschia sp. CCS1] Length = 187 Score = 213 bits (543), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 102/190 (53%), Positives = 135/190 (71%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F A+ +E SPLASRIF++ G+ V+FG DF Sbjct: 1 MFIQTEATPNPATLKFLPGQSVLEVGTADFPTAETSEKSPLASRIFAVEGVTGVFFGIDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D DW+H++P +LG IMEH+ SGDP+ +GD G + D +V Sbjct: 61 VTVTKADAVDWDHVKPAILGAIMEHYQSGDPV-----MGDGHEVSSGHAEHTGEDGEIVG 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IK +LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKSLLDTRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVVEVRPV 185 >gi|83943871|ref|ZP_00956328.1| nifU domain protein [Sulfitobacter sp. EE-36] gi|83953512|ref|ZP_00962234.1| nifU domain protein [Sulfitobacter sp. NAS-14.1] gi|83842480|gb|EAP81648.1| nifU domain protein [Sulfitobacter sp. NAS-14.1] gi|83845118|gb|EAP82998.1| nifU domain protein [Sulfitobacter sp. EE-36] Length = 186 Score = 213 bits (542), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 101/192 (52%), Positives = 136/192 (70%), Gaps = 10/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F + A SPLA+R+F++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEMGTADFPAPEAASASPLATRLFAVEGVTGVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG--DFIESDSAV 117 +T+ K D +W+HL+P +LG IMEHF SG P++ G D SG + D A+ Sbjct: 61 VTITKADGIEWDHLKPALLGAIMEHFQSGQPVMETG-------HDHASGHAEHTGEDGAI 113 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L Sbjct: 114 VGQIKELLDSRVRPAVAQDGGDITFHGFERGVVYLHMQGACAGCPSSTLTLKMGIENLLR 173 Query: 178 HFVPEVKDIRTV 189 H++PEV ++R V Sbjct: 174 HYIPEVTEVRPV 185 >gi|260574570|ref|ZP_05842574.1| Scaffold protein Nfu/NifU [Rhodobacter sp. SW2] gi|259023466|gb|EEW26758.1| Scaffold protein Nfu/NifU [Rhodobacter sp. SW2] Length = 186 Score = 213 bits (541), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 104/190 (54%), Positives = 137/190 (72%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A SPLA RIF+ G+ASV+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLELGTADFPSAEAAGKSPLAQRIFAAGGVASVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D W+H++P +LG IMEHF SG P+I + G D DS +V+ Sbjct: 61 VTVTKTDTAAWDHIKPGILGAIMEHFQSGAPVIEG------EQAASGHADHDGPDSDIVR 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 115 QIKELLDSRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R+V Sbjct: 175 IPEVLEVRSV 184 >gi|91974729|ref|YP_567388.1| nitrogen-fixing NifU-like [Rhodopseudomonas palustris BisB5] gi|91681185|gb|ABE37487.1| nitrogen-fixing NifU-like [Rhodopseudomonas palustris BisB5] Length = 188 Score = 212 bits (539), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 99/181 (54%), Positives = 139/181 (76%), Gaps = 5/181 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKFIPG+VVL G + F++ K+A SPLA R+F + G++ V++G DF Sbjct: 1 MFIQTEPTPNPATLKFIPGRVVLDSGTMEFTDRKQAARSPLAERLFEVEGVSGVFYGSDF 60 Query: 61 ITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGL-GDMKLDDMGSGDFIESDSAVV 118 +TV KD DW+HL+P +LG IMEH++SG PI+ +G + GD +D F E D+ V Sbjct: 61 VTVTKDGAGDWQHLKPAILGAIMEHYMSGAPIMADGRVDGDETDEDEF---FAERDAETV 117 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + IK++++ RVRPAVA DGGDI F+G++DG+V+L+M+GACSGCPS++ TL++G+ N+L H Sbjct: 118 EIIKDLIETRVRPAVANDGGDITFRGFKDGVVYLAMKGACSGCPSSTATLQHGIQNLLKH 177 Query: 179 F 179 F Sbjct: 178 F 178 >gi|254465238|ref|ZP_05078649.1| NifU domain protein [Rhodobacterales bacterium Y4I] gi|206686146|gb|EDZ46628.1| NifU domain protein [Rhodobacterales bacterium Y4I] Length = 188 Score = 212 bits (539), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 99/190 (52%), Positives = 136/190 (71%), Gaps = 5/190 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A A SPLASRIF++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEAGTADFPSADAAGKSPLASRIFAVDGVTGVFFGNDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + DW+H++P +LG +MEH+ SG P++ +G G + D+ +V Sbjct: 61 VTVTKAEGIDWDHIKPAILGAVMEHYQSGQPVMADGSADPAS----GHAEHSGEDAEIVN 116 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 117 QIKELLDSRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 176 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 177 IPEVTEVRPV 186 >gi|46201919|ref|ZP_00054106.2| COG0694: Thioredoxin-like proteins and domains [Magnetospirillum magnetotacticum MS-1] Length = 182 Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 103/190 (54%), Positives = 137/190 (72%), Gaps = 10/190 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG VV+ +G F+ A A SPLA+R+F+I G+ SV+ G DF Sbjct: 1 MFIQTEPTPNPATLKFLPGTVVMGQGTADFAEASRASGSPLATRLFAIEGVGSVFLGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV K D DW+ ++P VL IM+H+ SGDP+I+ G SGD D +V Sbjct: 61 ITVAKADSADWQVVKPQVLAAIMDHYNSGDPVINPGSEAAS-----ASGD----DDGIVM 111 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI+F+ + DGIV+L ++GACSGCPS+S TLK+G+ N+L ++ Sbjct: 112 QIKELLDTRVRPAVAQDGGDIIFRAFEDGIVYLHLQGACSGCPSSSATLKHGIENMLKYY 171 Query: 180 VPEVKDIRTV 189 VPEV ++ V Sbjct: 172 VPEVMAVQAV 181 >gi|39933530|ref|NP_945806.1| NifU-like domain-containing protein [Rhodopseudomonas palustris CGA009] gi|39647376|emb|CAE25897.1| possible NifU-like domain (residues 119-187) [Rhodopseudomonas palustris CGA009] Length = 188 Score = 211 bits (537), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 95/179 (53%), Positives = 137/179 (76%), Gaps = 2/179 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKFIPG+ VL G + F++A +A SPLA+R+F I G++ V++G DF Sbjct: 1 MFIQTEPTPNPATLKFIPGRSVLDSGTLEFTDASQAARSPLAARLFDIDGVSGVFYGTDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +TV KD+ +W+HL+P +LG IMEH++SG PI+ +G D + ++D+ V+ Sbjct: 61 VTVTKDKGEWQHLKPAILGAIMEHYMSGTPILADG--KSDGEDGDDDEFYADADAETVEI 118 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IK++++ RVRPAVA DGGDI F+G++DGIV+L+MRGAC+GCPS++ TL++G+ N+L HF Sbjct: 119 IKDLIETRVRPAVANDGGDITFRGFKDGIVYLNMRGACAGCPSSTATLQHGIQNLLKHF 177 >gi|188582635|ref|YP_001926080.1| Scaffold protein Nfu/NifU [Methylobacterium populi BJ001] gi|179346133|gb|ACB81545.1| Scaffold protein Nfu/NifU [Methylobacterium populi BJ001] Length = 188 Score = 211 bits (537), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 101/192 (52%), Positives = 139/192 (72%), Gaps = 7/192 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VVL EG +A AE SPLA+ +FS+PG++ VYFG+DF Sbjct: 1 MFIQTEATPNPATLKFLPGRVVLPEGTFEARDAAGAERSPLATALFSVPGVSGVYFGHDF 60 Query: 61 ITVGKDQ--YDWEHLRPPVLGMIMEHFISGDPIIHNG-GLGDMKLDDMGSGDFIESDSAV 117 I+V K +W ++P VLG IM+HF SG P++ G L + + ++ + E+D Sbjct: 61 ISVTKADGVNEWPQVKPAVLGAIMDHFQSGRPVLAEGTALAEDETEEF----YDEADHDT 116 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IK++L+ RVRPAVA DGGDI F+GYRDGIV+L M+GACSGCPS++ TL+ GV N+ Sbjct: 117 VATIKDLLETRVRPAVAGDGGDITFRGYRDGIVYLEMKGACSGCPSSTATLRQGVQNLFR 176 Query: 178 HFVPEVKDIRTV 189 HF+P V++++ + Sbjct: 177 HFLPSVREVQAI 188 >gi|192288888|ref|YP_001989493.1| Scaffold protein Nfu/NifU [Rhodopseudomonas palustris TIE-1] gi|192282637|gb|ACE99017.1| Scaffold protein Nfu/NifU [Rhodopseudomonas palustris TIE-1] Length = 188 Score = 211 bits (537), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 95/179 (53%), Positives = 137/179 (76%), Gaps = 2/179 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKFIPG+ VL G + F++A +A SPLA+R+F I G++ V++G DF Sbjct: 1 MFIQTEPTPNPATLKFIPGRRVLDSGTLEFTDASQAARSPLAARLFDIDGVSGVFYGTDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +TV KD+ +W+HL+P +LG IMEH++SG PI+ +G D + ++D+ V+ Sbjct: 61 VTVTKDKGEWQHLKPAILGAIMEHYMSGTPILADG--KSDGEDGDDDEFYADADAETVEI 118 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IK++++ RVRPAVA DGGDI F+G++DGIV+L+MRGAC+GCPS++ TL++G+ N+L HF Sbjct: 119 IKDLIETRVRPAVANDGGDITFRGFKDGIVYLNMRGACAGCPSSTATLQHGIQNLLKHF 177 >gi|83313502|ref|YP_423766.1| HIRA-interacting protein 5 [Magnetospirillum magneticum AMB-1] gi|82948343|dbj|BAE53207.1| HIRA-interacting protein 5 [Magnetospirillum magneticum AMB-1] Length = 190 Score = 211 bits (536), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 103/190 (54%), Positives = 137/190 (72%), Gaps = 10/190 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG VV+ +G F+ A A SPLA+R+F+I G+ SV+ G DF Sbjct: 9 MFIQTEPTPNPATLKFLPGTVVMGQGTADFAEASRASGSPLATRLFAIDGVGSVFLGTDF 68 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV K D DW+ ++P VL IM+H+ SGDP+I+ G SGD D +V Sbjct: 69 ITVAKLDAADWQVVKPQVLAAIMDHYNSGDPVINPGSEAAA-----ASGD----DDGIVM 119 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI+F+ + DGIV+L ++GACSGCPS+S TLK+G+ N+L ++ Sbjct: 120 QIKELLDTRVRPAVAQDGGDIIFRAFEDGIVYLHLQGACSGCPSSSATLKHGIENMLKYY 179 Query: 180 VPEVKDIRTV 189 VPEV ++ V Sbjct: 180 VPEVMAVQAV 189 >gi|86747711|ref|YP_484207.1| nitrogen-fixing NifU-like [Rhodopseudomonas palustris HaA2] gi|86570739|gb|ABD05296.1| Nitrogen-fixing NifU-like [Rhodopseudomonas palustris HaA2] Length = 188 Score = 211 bits (536), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 97/179 (54%), Positives = 135/179 (75%), Gaps = 1/179 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKFIPG+VVL G + F++ +A SPLA R+F + G++ V++G DF Sbjct: 1 MFIQTEPTPNPATLKFIPGRVVLDSGTMEFTDRSQAARSPLAERLFDVDGVSGVFYGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +TV KD DW+HL+P +LG IMEH++SG PI+ +G D+ F E D+ V+ Sbjct: 61 VTVTKDGGDWQHLKPAILGAIMEHYMSGAPILADGKTDGDAGDEDDEF-FAERDAETVEI 119 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IK++++ RVRPAVA DGGDI F+G++DGIV+L+M+GACSGCPS++ TL++G+ N+L HF Sbjct: 120 IKDLIETRVRPAVANDGGDITFRGFKDGIVYLAMKGACSGCPSSTATLQHGIQNLLKHF 178 >gi|114764450|ref|ZP_01443675.1| nifU domain protein [Pelagibaca bermudensis HTCC2601] gi|114543017|gb|EAU46036.1| nifU domain protein [Roseovarius sp. HTCC2601] Length = 186 Score = 211 bits (536), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 100/190 (52%), Positives = 133/190 (70%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ + SPLA R+F + G+ V+ G DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLGAGTADFPSAEGTDASPLAKRLFGVTGVTGVFLGSDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D DW+H++P VLG IMEHF SG+P++ G G F D +V Sbjct: 61 VTVTKADGADWDHVKPAVLGAIMEHFQSGEPVMAGEGGAS------GHAAFEGEDEEIVG 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 115 QIKELLDSRVRPAVAQDGGDITFHGFERGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 175 IPEVTEVRPV 184 >gi|126730479|ref|ZP_01746290.1| nifU domain protein [Sagittula stellata E-37] gi|126709212|gb|EBA08267.1| nifU domain protein [Sagittula stellata E-37] Length = 187 Score = 211 bits (536), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 99/190 (52%), Positives = 134/190 (70%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A A SPLA R+F++ G+ ++FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLDMGTADFPSADAAGASPLAQRLFAVDGVTGIFFGNDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D DW+H++P +LG IMEHF SG P++ +G G + D +V Sbjct: 61 VTVTKADTVDWDHMKPAILGAIMEHFQSGQPVMSDGAA-----QAGGHAEHEGEDGEIVG 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDSRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|84500284|ref|ZP_00998550.1| nifU domain protein [Oceanicola batsensis HTCC2597] gi|84392218|gb|EAQ04486.1| nifU domain protein [Oceanicola batsensis HTCC2597] Length = 187 Score = 210 bits (535), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 98/190 (51%), Positives = 134/190 (70%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ + SPLA+R+F++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEAGTADFPSAETSGKSPLAARLFAVEGVTGVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D+ W+H++P +LG IMEH+ SG P++ G G D D +V Sbjct: 61 VTVTKADETQWDHIKPALLGAIMEHYQSGQPVMATG-----DQPTSGHADHEGEDQEIVV 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDTRVRPAVAQDGGDITFHGFDRGVVYLYMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|254510570|ref|ZP_05122637.1| NifU domain protein [Rhodobacteraceae bacterium KLH11] gi|221534281|gb|EEE37269.1| NifU domain protein [Rhodobacteraceae bacterium KLH11] Length = 187 Score = 210 bits (535), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 101/192 (52%), Positives = 137/192 (71%), Gaps = 10/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ AE SPLA+RIF + G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEAGTADFPSAEAAEKSPLATRIFGVAGVTGVFFGNDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIES--DSAV 117 +TV K D W+H++P +LG +MEH+ SG P++ D G+G S D+ + Sbjct: 61 VTVTKSDDMQWDHIKPAILGAVMEHYQSGQPVMGTDA-------DTGAGHAEHSGEDAEI 113 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +IK++LD+RVRPAVA+DGGDI F G+ GIV+L M+GAC+GCPS++ TLK G+ N+L Sbjct: 114 VDQIKDLLDSRVRPAVAQDGGDITFHGFDRGIVYLHMQGACAGCPSSTITLKMGIENLLR 173 Query: 178 HFVPEVKDIRTV 189 H++PEV ++R V Sbjct: 174 HYIPEVVEVRPV 185 >gi|56695297|ref|YP_165645.1| NifU domain-containing protein [Ruegeria pomeroyi DSS-3] gi|56677034|gb|AAV93700.1| nifU domain protein [Ruegeria pomeroyi DSS-3] Length = 187 Score = 210 bits (535), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 98/190 (51%), Positives = 136/190 (71%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ AE SPLA+RIF++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEVGTADFPSAEAAEKSPLAARIFAVSGVTGVFFGNDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + +W+H++P +LG +MEH+ SG P+ +G G + D+ VV Sbjct: 61 VTVTKAEGVEWDHIKPAILGAVMEHYQSGQPV-----MGADAQTGSGHAEHSGEDAEVVT 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IK +LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKALLDSRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|154254042|ref|YP_001414866.1| scaffold protein Nfu/NifU [Parvibaculum lavamentivorans DS-1] gi|154157992|gb|ABS65209.1| Scaffold protein Nfu/NifU [Parvibaculum lavamentivorans DS-1] Length = 201 Score = 210 bits (534), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 102/190 (53%), Positives = 135/190 (71%), Gaps = 5/190 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+ VL EG A F A+ A SPLA R+F++ + V+FG D Sbjct: 16 MFIQTEATPNPATLKFLPGREVLGEGRAADFPTAEAAARSPLAMRLFAVENVTGVFFGSD 75 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K +W+HL+P +LG IMEHF G PI+ + D G+ D +V Sbjct: 76 FITVTKSGGEWQHLKPALLGAIMEHFTGGAPILFSAAPDDDDAHAAHEGE----DGEIVT 131 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F+GY +G+VFL+M+GAC+GCPS++ TLK GV N+L H+ Sbjct: 132 QIKEILDTRVRPAVAQDGGDITFQGYEEGVVFLNMQGACAGCPSSTVTLKRGVENMLKHY 191 Query: 180 VPEVKDIRTV 189 +PE+ ++R V Sbjct: 192 IPEIVEVRQV 201 >gi|254487441|ref|ZP_05100646.1| NifU domain protein [Roseobacter sp. GAI101] gi|214044310|gb|EEB84948.1| NifU domain protein [Roseobacter sp. GAI101] Length = 203 Score = 210 bits (534), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 99/190 (52%), Positives = 133/190 (70%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F + A SPLA+R+F++ G+ V+FG DF Sbjct: 18 MFIQTESTPNPATLKFLPGQTVLEMGTADFPAPEAASSSPLATRLFAVDGVTGVFFGTDF 77 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+HL+P +LG IMEHF SG ++ G G + D A+V Sbjct: 78 VTVTKADTIEWDHLKPALLGAIMEHFQSGQSVMEQG-----HEHASGHAEHTGEDGAIVG 132 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 133 QIKELLDSRVRPAVAQDGGDITFHGFERGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 192 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 193 IPEVTEVRPV 202 >gi|89068101|ref|ZP_01155518.1| Nitrogen-fixing NifU [Oceanicola granulosus HTCC2516] gi|89046340|gb|EAR52397.1| Nitrogen-fixing NifU [Oceanicola granulosus HTCC2516] Length = 186 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 99/190 (52%), Positives = 135/190 (71%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ VL G F++ + A SPLA RIFS+ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGEAVLDAGTADFASPEAANTSPLARRIFSVQGVTGVFFGTDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV KD+ +W+H++P +LG IMEH+ SG P++ G G G + D +V Sbjct: 61 VTVTKDEATEWDHVKPAILGAIMEHYQSGAPVV-EGAEGAT-----GHAEHTGEDGEIVA 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 115 QIKELLDTRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 175 IPEVVEVRPV 184 >gi|163797123|ref|ZP_02191078.1| nitrogen-fixing NifU-like protein [alpha proteobacterium BAL199] gi|159177639|gb|EDP62192.1| nitrogen-fixing NifU-like protein [alpha proteobacterium BAL199] Length = 187 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 98/188 (52%), Positives = 131/188 (69%), Gaps = 7/188 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE+TPNPATLKF+PG+ V+ G F + E SPLA +F + G+ V+ GYDF Sbjct: 1 MFIQTEETPNPATLKFLPGRQVMESGTAEFKSEDETARSPLAQALFQVDGVTGVFLGYDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I+V K D +W ++P VLG+IMEHF++G P I G +D G D+ +V Sbjct: 61 ISVSKHDGKEWYLMKPGVLGVIMEHFVAGRPTIVEDGASASAPEDAGE------DTEIVS 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA DGGDI F+GY DG+V L M+GACSGCPS++ TLK G+ N+L H+ Sbjct: 115 QIKELLDTRVRPAVAMDGGDITFQGYEDGVVTLQMQGACSGCPSSTATLKMGIENMLRHY 174 Query: 180 VPEVKDIR 187 +PEV+++R Sbjct: 175 IPEVREVR 182 >gi|163852613|ref|YP_001640656.1| scaffold protein Nfu/NifU [Methylobacterium extorquens PA1] gi|218531454|ref|YP_002422270.1| Scaffold protein Nfu/NifU [Methylobacterium chloromethanicum CM4] gi|240139947|ref|YP_002964424.1| NifU-like protein [Methylobacterium extorquens AM1] gi|254562372|ref|YP_003069467.1| NifU-like [Methylobacterium extorquens DM4] gi|163664218|gb|ABY31585.1| Scaffold protein Nfu/NifU [Methylobacterium extorquens PA1] gi|218523757|gb|ACK84342.1| Scaffold protein Nfu/NifU [Methylobacterium chloromethanicum CM4] gi|240009921|gb|ACS41147.1| NifU-like protein [Methylobacterium extorquens AM1] gi|254269650|emb|CAX25622.1| NifU-like [Methylobacterium extorquens DM4] Length = 188 Score = 209 bits (531), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 98/192 (51%), Positives = 138/192 (71%), Gaps = 7/192 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VVL +G + AE SPLA+ +F++PG++ VYFG+DF Sbjct: 1 MFIQTEATPNPATLKFLPGRVVLTDGTFEARDTASAERSPLATALFAVPGVSGVYFGHDF 60 Query: 61 ITVGKDQ--YDWEHLRPPVLGMIMEHFISGDPIIHNG-GLGDMKLDDMGSGDFIESDSAV 117 I+V K +W ++P VLG IM+HF SG P++ G L + + ++ + E+D Sbjct: 61 ISVTKADGVNEWPQVKPAVLGAIMDHFQSGRPVLAEGTALAEDETEEF----YDEADHDT 116 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IK++L+ RVRPAVA DGGDI F+GYRDGIV+L M+GACSGCPS++ TL+ GV N+ Sbjct: 117 VVTIKDLLETRVRPAVAGDGGDITFRGYRDGIVYLEMKGACSGCPSSTATLRQGVQNLFR 176 Query: 178 HFVPEVKDIRTV 189 HF+P V++++ + Sbjct: 177 HFLPSVREVQAI 188 >gi|332557651|ref|ZP_08411973.1| Nitrogen-fixing NifU domain protein [Rhodobacter sphaeroides WS8N] gi|332275363|gb|EGJ20678.1| Nitrogen-fixing NifU domain protein [Rhodobacter sphaeroides WS8N] Length = 186 Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 100/190 (52%), Positives = 137/190 (72%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ+VL G F+ + A SPLA RIF++ G+++V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQMVLEAGTADFATPEAAATSPLARRIFAVGGVSAVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 + V K D+ W+H++P +LG IMEH+ SG P++ G+ S D + D VV+ Sbjct: 61 VAVTKADEVAWDHIKPAILGAIMEHYQSGAPVLE----GEQAASGHASHDGPDED--VVR 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ GIV+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 115 QIKELLDTRVRPAVAQDGGDITFHGFDRGIVYLHMQGACAGCPSSTLTLKMGIENLLRHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 175 IPEVLEVRPV 184 >gi|90420546|ref|ZP_01228453.1| putative nitrogen-fixing NifU domain protein [Aurantimonas manganoxydans SI85-9A1] gi|90335274|gb|EAS49027.1| putative nitrogen-fixing NifU domain protein [Aurantimonas manganoxydans SI85-9A1] Length = 191 Score = 208 bits (530), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 99/180 (55%), Positives = 127/180 (70%), Gaps = 3/180 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHF-SNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VVL G F S A SPLA+R+ +PG+ V+FGYD Sbjct: 1 MFIQTEVTPNPATLKFLPGRVVLESGTEEFLSKEDAANRSPLAARLMDVPGVTGVFFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 F+TV KD DW+HL+P +L +MEHF+ +P++ G D G F D V Sbjct: 61 FVTVSKDGPDWQHLKPAILAGLMEHFMGNEPVMTAQGSNAAMPD--GEEFFEPGDEGTVA 118 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ RVRPAVA+DGGDI F+GYRDG V+L+MRGAC+GCPS++ TLK+G+ N+L HF Sbjct: 119 TIKELLETRVRPAVAQDGGDITFRGYRDGTVYLNMRGACAGCPSSTATLKHGIQNLLRHF 178 >gi|149913250|ref|ZP_01901784.1| NifU-like domain protein [Roseobacter sp. AzwK-3b] gi|149813656|gb|EDM73482.1| NifU-like domain protein [Roseobacter sp. AzwK-3b] Length = 187 Score = 208 bits (529), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 101/193 (52%), Positives = 136/193 (70%), Gaps = 12/193 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F A+ ++ SPLA+R+F + G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEAGTADFPTAEASDKSPLATRLFGVKGVRGVFFGNDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLD-DMGSGDFIES--DSA 116 +TV K D +W+H++P +LG IMEHF SG P+ M +D + SG DS Sbjct: 61 VTVTKTDDAEWDHIKPSILGAIMEHFQSGQPV--------MAVDAEHASGHAAHEGEDSE 112 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +V +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L Sbjct: 113 IVGQIKELLDTRVRPAVAQDGGDITFHGFERGVVYLHMQGACAGCPSSTITLKMGIENLL 172 Query: 177 NHFVPEVKDIRTV 189 H++PEV ++R V Sbjct: 173 RHYIPEVTEVRPV 185 >gi|170741563|ref|YP_001770218.1| scaffold protein Nfu/NifU [Methylobacterium sp. 4-46] gi|168195837|gb|ACA17784.1| Scaffold protein Nfu/NifU [Methylobacterium sp. 4-46] Length = 187 Score = 208 bits (529), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 100/191 (52%), Positives = 136/191 (71%), Gaps = 6/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VVL +G + +A SPLA +F++PG+A VYFG+DF Sbjct: 1 MFIQTEATPNPATLKFLPGKVVLTDGTFEARSPDQAAPSPLARALFAVPGVAGVYFGHDF 60 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 I+V K D +W ++P VLG IMEHF+SG P++ G F E+D+ V Sbjct: 61 ISVTKAEDGSEWPQVKPAVLGAIMEHFLSGAPVLDAG----AAPAAPAEEFFAEADADTV 116 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IK++L+ RVRPAVA DGGDI F+GYR+G+V+L M+GACSGCPS++ TL+ GV N+ H Sbjct: 117 ATIKDLLETRVRPAVAGDGGDITFRGYREGVVYLEMKGACSGCPSSTATLRQGVQNLFRH 176 Query: 179 FVPEVKDIRTV 189 F+PEV++++ V Sbjct: 177 FLPEVREVQAV 187 >gi|159045379|ref|YP_001534173.1| hypothetical protein Dshi_2839 [Dinoroseobacter shibae DFL 12] gi|157913139|gb|ABV94572.1| conserved hypothetical protein [Dinoroseobacter shibae DFL 12] Length = 187 Score = 207 bits (528), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 101/190 (53%), Positives = 136/190 (71%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A SPLA RIF++ G+ +V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLETGTADFPSAEAAGSSPLAGRIFAVNGVTAVFFGTDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV KD+ +W+H++P VLG +MEH+ SGD ++ G+ G DS +V Sbjct: 61 VTVTKDEGVEWDHIKPAVLGAVMEHYQSGDAVM----TGEASAP-AGHAAHDGPDSEIVG 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ GIV+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDTRVRPAVAQDGGDITFHGFDRGIVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVLEVRPV 185 >gi|126461658|ref|YP_001042772.1| NifU domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|221638629|ref|YP_002524891.1| nitrogen-fixing NifU domain-containing protein [Rhodobacter sphaeroides KD131] gi|126103322|gb|ABN76000.1| nitrogen-fixing NifU domain protein [Rhodobacter sphaeroides ATCC 17029] gi|221159410|gb|ACM00390.1| Nitrogen-fixing NifU domain protein [Rhodobacter sphaeroides KD131] Length = 186 Score = 207 bits (527), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 100/190 (52%), Positives = 136/190 (71%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ+VL G F+ + A SPLA RIF+ G+++V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQMVLEAGTADFATPEAAATSPLARRIFAAGGVSAVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 + V K D+ W+H++P +LG IMEH+ SG P++ G+ S D + D VV+ Sbjct: 61 VAVTKADEVAWDHIKPAILGAIMEHYQSGAPVLE----GEQAASGHASHDGPDED--VVR 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ GIV+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 115 QIKELLDTRVRPAVAQDGGDITFHGFDRGIVYLHMQGACAGCPSSTLTLKMGIENLLRHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 175 IPEVLEVRPV 184 >gi|217979031|ref|YP_002363178.1| Scaffold protein Nfu/NifU [Methylocella silvestris BL2] gi|217504407|gb|ACK51816.1| Scaffold protein Nfu/NifU [Methylocella silvestris BL2] Length = 187 Score = 207 bits (526), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 95/190 (50%), Positives = 134/190 (70%), Gaps = 4/190 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFI+TE TPNP TLKF+PG+ V+ G + ++A SPLA +F + G+ V+FG DF Sbjct: 1 MFIETETTPNPKTLKFLPGRPVMSAGTLDIKEPEDARQSPLAEALFELDGVKGVFFGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI-ESDSAVVQ 119 ITV DW+ L+P VLG IMEHF+SGDP+++ D G +F ESD+ V Sbjct: 61 ITVTNANEDWQELKPTVLGAIMEHFLSGDPLLNEHA---HVSPDAGEREFFEESDAETVT 117 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IK++++ VRPAVA DGGDI F+GYRDGIV+L+M+G+CSGCPS++ TLK+G+ N+L H+ Sbjct: 118 AIKQLIETHVRPAVANDGGDIKFRGYRDGIVYLAMKGSCSGCPSSTATLKHGIQNLLKHY 177 Query: 180 VPEVKDIRTV 189 VP+V+ + ++ Sbjct: 178 VPDVQSVESI 187 >gi|323138525|ref|ZP_08073593.1| Scaffold protein Nfu/NifU [Methylocystis sp. ATCC 49242] gi|322396159|gb|EFX98692.1| Scaffold protein Nfu/NifU [Methylocystis sp. ATCC 49242] Length = 187 Score = 207 bits (526), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 100/190 (52%), Positives = 141/190 (74%), Gaps = 4/190 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL +GA+ F + A +PLA + +I G+ +V +G DF Sbjct: 1 MFIQTETTPNPATLKFLPGQDVLGQGAMEFRSPDAAANAPLAQALLAIDGVQAVMYGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE-SDSAVVQ 119 ++V KD DW HL+P +LG IMEHF SG P++ G G + +D G+F + SD+ V Sbjct: 61 VSVTKDGADWAHLKPAILGTIMEHFASGAPLLTEGAAGAQQHED---GEFYDPSDAETVA 117 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+++ RVRPAVA DGGDIVF+G+RDG+V+L+M+GACSGCPS++ TL+ G+ N+L HF Sbjct: 118 TIKELIETRVRPAVAGDGGDIVFRGFRDGVVYLTMKGACSGCPSSTATLRNGIENLLRHF 177 Query: 180 VPEVKDIRTV 189 +P++K +++ Sbjct: 178 LPQIKAVQSA 187 >gi|84683414|ref|ZP_01011317.1| nifU domain protein [Maritimibacter alkaliphilus HTCC2654] gi|84668157|gb|EAQ14624.1| nifU domain protein [Rhodobacterales bacterium HTCC2654] Length = 186 Score = 207 bits (526), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 98/190 (51%), Positives = 134/190 (70%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A SPLA R+F++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQEVLEAGTADFPSAEAAAKSPLAQRVFAVNGVKGVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+H++P +LG IMEHF SG P++ G + G D+ +V Sbjct: 61 VTVTKADDVEWDHVKPAILGAIMEHFQSGAPVMGEGPREAAHAEHDGP------DAEIVV 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IK++LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 115 QIKDLLDTRVRPAVAQDGGDITFHGFERGVVYLHMQGACAGCPSSTLTLKMGIENLLKHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 175 IPEVTEVRPV 184 >gi|67633331|gb|AAY78582.1| predicted thioredoxin-like protein [uncultured bacterium MedeBAC82F10] Length = 185 Score = 206 bits (524), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 98/190 (51%), Positives = 132/190 (69%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MF+QTE TPNPATLKF+PG+ V+ EG I F N A SPLA +F+I G+ SV+FG DF Sbjct: 1 MFVQTEPTPNPATLKFLPGREVMKEGTIFFQNQDSAVNSPLAQNLFNIKGVESVFFGSDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 IT+ K + +W ++P +LG I+EHF P+I K + E+DS VV+ Sbjct: 61 ITITKAEANEWTLMKPAILGCIIEHFTMNKPVIS-------KQAPRTEHTYDENDSDVVK 113 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD +VRPAVA DGGDI+F Y +GIVFL M+GAC GCPS++ TLK G+ N+L H+ Sbjct: 114 KIKELLDTKVRPAVAMDGGDIIFDKYNEGIVFLQMQGACQGCPSSTATLKMGIENMLKHY 173 Query: 180 VPEVKDIRTV 189 +PEV+++R V Sbjct: 174 IPEVREVRPV 183 >gi|255264504|ref|ZP_05343846.1| NifU domain protein [Thalassiobium sp. R2A62] gi|255106839|gb|EET49513.1| NifU domain protein [Thalassiobium sp. R2A62] Length = 187 Score = 206 bits (523), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 99/190 (52%), Positives = 135/190 (71%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ AE SPLA RIF++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLDMGTADFPSAEAAEKSPLAKRIFAVEGVTGVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+H++P +LG +MEH+ SG +I G+ G + D+ +V Sbjct: 61 VTVTKGDDIEWDHIKPAILGAVMEHYQSGAAVID----GEAPTSG-GHAEHTGEDAEIVG 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDTRVRPAVAQDGGDITFLGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVLEVRPV 185 >gi|27375911|ref|NP_767440.1| hypothetical protein bll0800 [Bradyrhizobium japonicum USDA 110] gi|27349049|dbj|BAC46065.1| bll0800 [Bradyrhizobium japonicum USDA 110] Length = 189 Score = 204 bits (519), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 96/187 (51%), Positives = 138/187 (73%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKFIPG+VV+ + F++ + A SPLA ++F +PG+ V++G DF Sbjct: 1 MFIQTEATPNPATLKFIPGRVVVDGSPMEFASRESAARSPLAEKLFEVPGVTGVFYGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ITV K +W+ L+P +LG IMEH++SG P++ +G D F E+D+ V Sbjct: 61 ITVTKANGEWQQLKPAILGAIMEHYMSGAPLLADGAAQSDADLDDEDEFFDEADAETVDM 120 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IK++++ RVRPAVA DGGDI F+G++DGIV+L+M+GACSGCPS++ TL++G+ N+L HFV Sbjct: 121 IKDLIETRVRPAVANDGGDITFRGFKDGIVYLNMKGACSGCPSSTATLQHGIQNLLKHFV 180 Query: 181 PEVKDIR 187 P+V ++R Sbjct: 181 PDVVEVR 187 >gi|114769272|ref|ZP_01446898.1| nifU domain protein [alpha proteobacterium HTCC2255] gi|114550189|gb|EAU53070.1| nifU domain protein [alpha proteobacterium HTCC2255] Length = 186 Score = 204 bits (519), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 96/190 (50%), Positives = 132/190 (69%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ V+ G F + + SPLA RIF++ G +V+ G DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVMNMGTADFPSPQAGSSSPLAKRIFAVDGATAVFLGPDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +T+ K + DW+H++P +LG IMEHF SG P+I + + G + DS +V Sbjct: 61 VTITKTEDADWDHIKPALLGAIMEHFQSGQPVIEG------EDNSGGHAEHTGEDSDIVN 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IK++LD RVRPAVA+DGGDI F G+ GIV+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 115 QIKDLLDTRVRPAVAQDGGDITFHGFERGIVYLHMQGACAGCPSSTITLKMGIENLLRHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 175 IPEVTEVRPV 184 >gi|119383283|ref|YP_914339.1| NifU domain-containing protein [Paracoccus denitrificans PD1222] gi|119373050|gb|ABL68643.1| nitrogen-fixing NifU domain protein [Paracoccus denitrificans PD1222] Length = 184 Score = 203 bits (517), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 99/190 (52%), Positives = 128/190 (67%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ VL G F A SPLA RIF++PG+ V+ G DF Sbjct: 1 MFIQTETTPNPATLKFLPGETVLGSGTADFPAPDTAAASPLARRIFAVPGVTGVFLGSDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + W+HL+P VLG IMEH+ SG P I G D D+ +V Sbjct: 61 VTVTKAEDAVWDHLKPSVLGAIMEHYQSGAPAIEGATAS-------GHNDQDGPDAEIVN 113 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 114 QIKELLDTRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 173 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 174 IPEVTEVRPV 183 >gi|296533479|ref|ZP_06896057.1| NifU domain protein [Roseomonas cervicalis ATCC 49957] gi|296266192|gb|EFH12239.1| NifU domain protein [Roseomonas cervicalis ATCC 49957] Length = 187 Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 103/191 (53%), Positives = 135/191 (70%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL-VEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFI+TE TPNPATLKF+PGQ V+ G F+NA A SPLA R+F + G+A ++ G D Sbjct: 1 MFIETEATPNPATLKFLPGQDVMGSRGTADFTNAGAAARSPLAERLFGLEGVARIFLGSD 60 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K + +W+ L+P VLG IMEH ++G P++ GD L+D +D+ +V Sbjct: 61 FITVTKAEGVEWQALKPQVLGAIMEHVMAGRPVVLEEE-GDAALEDSDP-----ADAEIV 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +IKE+LD RVRPAVA DGGDIVF+G+RDGIV L ++GACSGCPS+ TLK+GV N+L H Sbjct: 115 AQIKELLDTRVRPAVAGDGGDIVFRGFRDGIVKLHLQGACSGCPSSRATLKHGVENMLRH 174 Query: 179 FVPEVKDIRTV 189 +VPEV + V Sbjct: 175 YVPEVMAVEQV 185 >gi|163744246|ref|ZP_02151606.1| NifU-like domain protein [Oceanibulbus indolifex HEL-45] gi|161381064|gb|EDQ05473.1| NifU-like domain protein [Oceanibulbus indolifex HEL-45] Length = 186 Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 98/193 (50%), Positives = 130/193 (67%), Gaps = 12/193 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F SPLA R+F++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEMGTADFPTPDAGATSPLAQRLFAVEGVTGVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPII---HNGGLGDMKLDDMGSGDFIESDSA 116 +TV K D +W+H++P +LG IMEHF SGD ++ H G D D Sbjct: 61 VTVTKQDAVEWDHVKPALLGAIMEHFQSGDAVMASDHQPTSGHAAHDG--------EDGE 112 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +V +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L Sbjct: 113 IVGQIKELLDSRVRPAVAQDGGDITFHGFERGVVYLHMQGACAGCPSSTLTLKMGIENLL 172 Query: 177 NHFVPEVKDIRTV 189 H++PEV ++R V Sbjct: 173 RHYIPEVTEVRPV 185 >gi|75674208|ref|YP_316629.1| nitrogen-fixing NifU [Nitrobacter winogradskyi Nb-255] gi|74419078|gb|ABA03277.1| nitrogen-fixing NifU [Nitrobacter winogradskyi Nb-255] Length = 190 Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 93/180 (51%), Positives = 134/180 (74%), Gaps = 1/180 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ VL +G + F++A SPLA ++F++ G+A V++G DF Sbjct: 1 MFIQTEITPNPATLKFLPGRTVLGKGTMEFTSASTTARSPLAVKLFAVHGVAGVFYGSDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV KD+ DW+HL+P +LG+IMEH+++G P++ +G D F E+D+ V Sbjct: 61 ITVTKDEGSDWQHLKPAILGVIMEHYMAGAPLLADGEGCSEANADSDVEFFDEADAETVT 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IK++++ RVRP VA DGGDI F+G+RDGIV+++M+GACSGCPS++ TL+ G+ N+L HF Sbjct: 121 LIKDLIETRVRPGVADDGGDITFRGFRDGIVYVNMKGACSGCPSSTVTLRNGIQNLLKHF 180 >gi|84515908|ref|ZP_01003269.1| nifU domain protein [Loktanella vestfoldensis SKA53] gi|84510350|gb|EAQ06806.1| nifU domain protein [Loktanella vestfoldensis SKA53] Length = 187 Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 101/190 (53%), Positives = 134/190 (70%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F NA+ A+ SPLA RIF+ G++ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQNVLEVGTADFPNAEAAQHSPLAQRIFAAGGVSGVFFGIDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+H++P +LG IMEH+ SG ++ D K G + D +V Sbjct: 61 VTVTKADGAEWDHIKPGILGAIMEHYQSGQSVM----AADHKPVS-GHAEHSGEDGDIVT 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ GIV+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDTRVRPAVAQDGGDITFHGFDRGIVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVIEVRPV 185 >gi|114326814|ref|YP_743971.1| Fe-S cluster assembly protein NFU [Granulibacter bethesdensis CGDNIH1] gi|114314988|gb|ABI61048.1| Fe-S cluster assembly protein NFU [Granulibacter bethesdensis CGDNIH1] Length = 186 Score = 202 bits (515), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 98/190 (51%), Positives = 132/190 (69%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFI+TE TPNPATLKF+PG+ V+ G F++A A+ SPLA +F +PGIA V+ G DF Sbjct: 1 MFIETEGTPNPATLKFLPGRDVMPGGTADFASAATAQRSPLALALFELPGIARVFLGADF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K +W L+P VL +M+HF++G P++++ D+ D D +V Sbjct: 61 VTVTKSSDVEWPELKPQVLAALMDHFVTGRPVLND------TPSDVLEEDIRPEDREIVD 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA DGGDIVF+GYRDG+V L M+GACSGCPS+ TLK+G+ N+L H+ Sbjct: 115 QIKELLDTRVRPAVAGDGGDIVFRGYRDGVVLLHMQGACSGCPSSRATLKHGIENMLRHY 174 Query: 180 VPEVKDIRTV 189 VPEV + V Sbjct: 175 VPEVLAVEQV 184 >gi|126734863|ref|ZP_01750609.1| NifU-like domain protein [Roseobacter sp. CCS2] gi|126715418|gb|EBA12283.1| NifU-like domain protein [Roseobacter sp. CCS2] Length = 187 Score = 202 bits (514), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 99/190 (52%), Positives = 131/190 (68%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ AE SPLA RIF G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQNVLEVGTADFPSAEAAENSPLAKRIFDAGGVTGVFFGIDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+H++P +LG IMEH+ SG + + + G + D +V Sbjct: 61 VTVTKADDVEWDHIKPGILGAIMEHYQSGQSV-----MAEDHKPVSGHAEHTGEDGEIVG 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ GIV+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDTRVRPAVAQDGGDITFHGFERGIVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVVEVRPV 185 >gi|254453730|ref|ZP_05067167.1| NifU domain protein [Octadecabacter antarcticus 238] gi|198268136|gb|EDY92406.1| NifU domain protein [Octadecabacter antarcticus 238] Length = 186 Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 97/190 (51%), Positives = 131/190 (68%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F + + A SPLA RIF + G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQNVLEVGTADFPSVEAAGKSPLAGRIFGVEGVTGVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV K D +W+H++P +LG +MEH+ SG ++ G G + D+ +V Sbjct: 61 ITVTKADDVEWDHIKPAILGAVMEHYQSGAAVMTGEQAGS------GHAEHTGEDADIVN 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 115 QIKELLDTRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 175 IPEVVEVRPV 184 >gi|170747078|ref|YP_001753338.1| scaffold protein Nfu/NifU [Methylobacterium radiotolerans JCM 2831] gi|170653600|gb|ACB22655.1| Scaffold protein Nfu/NifU [Methylobacterium radiotolerans JCM 2831] Length = 188 Score = 202 bits (513), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 100/191 (52%), Positives = 142/191 (74%), Gaps = 5/191 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VVL E +A+ A SPLA+ +F++PG+A VYFG+DF Sbjct: 1 MFIQTEATPNPATLKFLPGRVVLAESTFEARDAEAAARSPLAAALFTVPGVAGVYFGHDF 60 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 I+V K D +W ++P VLG IMEHF SG P++ GG G++ + G + E+D V Sbjct: 61 ISVTKAEDGSEWAQVKPAVLGAIMEHFQSGAPVMAEGGHGEI---EPGDEFYDEADHDTV 117 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IK++L+ RVRPAVA DGGDI F+GY++G+V+L M+GACSGCPS++ TL++GV N+ H Sbjct: 118 VTIKDLLETRVRPAVAGDGGDITFRGYKEGVVYLEMKGACSGCPSSTATLRHGVQNLFRH 177 Query: 179 FVPEVKDIRTV 189 F+PE+++++ + Sbjct: 178 FLPEIREVQAI 188 >gi|254454487|ref|ZP_05067924.1| NifU domain protein [Octadecabacter antarcticus 238] gi|198268893|gb|EDY93163.1| NifU domain protein [Octadecabacter antarcticus 238] Length = 183 Score = 201 bits (512), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 95/190 (50%), Positives = 134/190 (70%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQ++ TPNPATLKF+PG V+ +G + F ++A SPLAS++F + G+ V+FG DF Sbjct: 1 MFIQSQQTPNPATLKFLPGVAVMEQGTVSFPTREDAARSPLASQLFDVNGVDGVFFGGDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV K D DW L+P +LG IMEHF SG P+++ D + D D D +V Sbjct: 61 ITVTKTDDMDWTPLKPAILGAIMEHFTSGQPLLNE----DASMSDHAVSD---DDDELVT 113 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI+F G+ G+V+L ++GACSGCPS++ TLK G+ N+L H+ Sbjct: 114 QIKELLDTRVRPAVAQDGGDILFHGFERGVVYLQLQGACSGCPSSTATLKGGIENMLRHY 173 Query: 180 VPEVKDIRTV 189 +P+V ++R + Sbjct: 174 IPDVIEVRAI 183 >gi|146278315|ref|YP_001168474.1| NifU domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145556556|gb|ABP71169.1| nitrogen-fixing NifU domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 186 Score = 200 bits (508), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 102/190 (53%), Positives = 136/190 (71%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ+VL G F++A+ A SPLA RIF G+ASV+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQMVLEAGTADFASAEAAATSPLARRIFGAGGVASVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I V K D+ W+H++P +LG IMEH+ SG P++ G+ + D D +V+ Sbjct: 61 IAVTKEDEVVWDHVKPAILGAIMEHYQSGAPVLE----GEQAASGHATHD--GPDEEIVR 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ GIV+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 115 QIKELLDTRVRPAVAQDGGDITFHGFDRGIVYLHMQGACAGCPSSTLTLKMGIENLLRHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 175 IPEVLEVRPV 184 >gi|77462766|ref|YP_352270.1| nitrogen-fixing NifU [Rhodobacter sphaeroides 2.4.1] gi|77387184|gb|ABA78369.1| Nitrogen-fixing NifU [Rhodobacter sphaeroides 2.4.1] Length = 186 Score = 199 bits (507), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 101/190 (53%), Positives = 137/190 (72%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ+VL G F+ A+ A SPLA RIF+ G+++V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQMVLEAGTADFATAEAAATSPLARRIFAAGGVSAVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 + V K D+ W+H++P +LG IMEH+ SG P++ G+ S D + D VV+ Sbjct: 61 VAVTKADEVAWDHIKPAILGAIMEHYQSGAPVLE----GEQAASGHASHDGPDED--VVR 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ GIV+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 115 QIKELLDTRVRPAVAQDGGDITFHGFDRGIVYLHMQGACAGCPSSTLTLKMGIENLLRHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 175 IPEVLEVRPV 184 >gi|83594860|ref|YP_428612.1| nitrogen-fixing NifU-like [Rhodospirillum rubrum ATCC 11170] gi|83577774|gb|ABC24325.1| Nitrogen-fixing NifU-like [Rhodospirillum rubrum ATCC 11170] Length = 183 Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 96/190 (50%), Positives = 136/190 (71%), Gaps = 9/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPA+LKF+PG+ VL G F++ A SPLA R+F+I G+ +Y G DF Sbjct: 1 MFIQTERTPNPASLKFLPGKAVLPGGGRDFADVGAAGPSPLARRLFAIDGVTGIYLGADF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV K + DW+ ++P VLG IMEHF SG+P++ G + GS + D VV+ Sbjct: 61 ITVSKAEAEDWQVIKPLVLGAIMEHFTSGEPVLIAG----TAAESAGSAE----DDEVVR 112 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +I+++L+ RVRPAVA+DGGDIVF ++DG+V+L +RG+CSGCPS++ TLK+G+ N+L H+ Sbjct: 113 QIRDLLETRVRPAVAQDGGDIVFDRFQDGVVYLHLRGSCSGCPSSTATLKHGIENMLRHY 172 Query: 180 VPEVKDIRTV 189 +PEV+ + V Sbjct: 173 IPEVEAVEAV 182 >gi|92115649|ref|YP_575378.1| nitrogen-fixing NifU-like [Nitrobacter hamburgensis X14] gi|91798543|gb|ABE60918.1| nitrogen-fixing NifU-like protein [Nitrobacter hamburgensis X14] Length = 191 Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 91/181 (50%), Positives = 131/181 (72%), Gaps = 2/181 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ VL +G + F+ A S LA R+F++ G+ V++G DF Sbjct: 1 MFIQTEVTPNPATLKFLPGRTVLGKGTMEFNGPDTAGRSQLAVRLFAVHGVTGVFYGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLG--DMKLDDMGSGDFIESDSAVV 118 ITV KD DW+HL+P +LG+IMEH++SG P++ +G D D F E+D+ V Sbjct: 61 ITVTKDASDWQHLKPAILGVIMEHYMSGAPLLADGETAGNDEANKDEAVEFFDEADAETV 120 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IK++++ RVRP VA DGGDI F+G++DG+V+++M+G+CSGCPS++ TL+ G+ N+L H Sbjct: 121 TLIKDLIETRVRPGVADDGGDITFRGFKDGVVYVNMKGSCSGCPSSTVTLRNGIQNLLKH 180 Query: 179 F 179 F Sbjct: 181 F 181 >gi|329114732|ref|ZP_08243489.1| Scaffold Protein Nfu/NifU [Acetobacter pomorum DM001] gi|326695863|gb|EGE47547.1| Scaffold Protein Nfu/NifU [Acetobacter pomorum DM001] Length = 186 Score = 198 bits (503), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 100/192 (52%), Positives = 136/192 (70%), Gaps = 10/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE-GAIHFSNAKE-AEISPLASRIFSIPGIASVYFGY 58 MFI+TE TPNPATLKF+PGQ V+ + G I F +A A SPLA +F++PG++ V+ G Sbjct: 1 MFIETEGTPNPATLKFLPGQAVMGDAGTIDFIDADAVAGRSPLAEALFALPGVSRVFLGN 60 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 DF++V K D DWE LRP +L +M+HF++G P++ G + + + + D + Sbjct: 61 DFVSVTKADSEDWEELRPQILSTLMDHFVAGHPVVAEG----VAVTEDATA---PEDEEI 113 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +IKE+LD RVRPAVA DGGDIVF+GYR+GIV L+M+GACSGCPS+ TLK+GV N+L Sbjct: 114 VTQIKELLDTRVRPAVAGDGGDIVFRGYRNGIVRLTMQGACSGCPSSRATLKHGVENMLR 173 Query: 178 HFVPEVKDIRTV 189 H+VPEV + V Sbjct: 174 HYVPEVVSVEQV 185 >gi|209965893|ref|YP_002298808.1| NifU-like domain protein [Rhodospirillum centenum SW] gi|209959359|gb|ACI99995.1| NifU-like domain protein [Rhodospirillum centenum SW] Length = 186 Score = 197 bits (502), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 97/190 (51%), Positives = 132/190 (69%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE+TPNPATLKF+PG+ VL G F+ + A SPLA+R+F + G+ V+ G DF Sbjct: 1 MFIQTEETPNPATLKFLPGRDVLGRGTADFAGPETAGPSPLAARLFEVEGVTRVFLGADF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + DW L+P VLG++MEHF +G P++ G DD + D VV Sbjct: 61 VTVTKTEDKDWYALKPSVLGVLMEHFTAGRPVLLEG-----TADDGHAEAANAEDEEVVA 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDIRVRPAVAQDGGDITFHGFDKGVVYLHMKGACAGCPSSTATLKAGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVVEVRQV 185 >gi|295687469|ref|YP_003591162.1| Scaffold protein Nfu/NifU [Caulobacter segnis ATCC 21756] gi|295429372|gb|ADG08544.1| Scaffold protein Nfu/NifU [Caulobacter segnis ATCC 21756] Length = 191 Score = 197 bits (500), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 100/190 (52%), Positives = 129/190 (67%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP LKF+PG+ VLVEGA F A+E E SPLA +F + + V+FG DF Sbjct: 1 MFIQTETTPNPEVLKFLPGREVLVEGAREFRTAEEGEASPLAKALFDLGDVTRVFFGPDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + W HL+ P+L IM+HF SG P++ + G +D G + E S +V Sbjct: 61 LTVTKGEAAQWPHLKAPILAAIMDHFTSGRPLLLDAEPGGGHDED---GVYDEEASQIVA 117 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+LD R+RPAVA+DGGDIVF + + G+V+L MRGACSGCPS+S TLK GV N+L Sbjct: 118 EIKELLDTRIRPAVAQDGGDIVFSRFEPQTGVVWLHMRGACSGCPSSSATLKAGVENMLK 177 Query: 178 HFVPEVKDIR 187 H+VPEV + Sbjct: 178 HYVPEVTRVE 187 >gi|85714190|ref|ZP_01045179.1| nitrogen-fixing NifU [Nitrobacter sp. Nb-311A] gi|85699316|gb|EAQ37184.1| nitrogen-fixing NifU [Nitrobacter sp. Nb-311A] Length = 190 Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 90/181 (49%), Positives = 135/181 (74%), Gaps = 3/181 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ VL + + F++A SPLA ++F++ G+ V++G DF Sbjct: 1 MFIQTEITPNPATLKFLPGRTVLGKDTMEFTSASTTARSPLAVKLFAVHGVTGVFYGSDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI-ESDSAVV 118 ITV KD DW+HL+P +LG+IMEH++SG P++ + G G+ + + +F E+D+ V Sbjct: 61 ITVTKDDASDWQHLKPAILGVIMEHYMSGAPLLADDG-GNTEPNAENDVEFFDEADAETV 119 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IK++++ RVRP VA DGGDI F+G++DG+V+++M+GACSGCPS++ TL+ G+ N+L H Sbjct: 120 TLIKDLIETRVRPGVADDGGDITFRGFKDGVVYVNMKGACSGCPSSTVTLRNGIQNLLKH 179 Query: 179 F 179 F Sbjct: 180 F 180 >gi|288959669|ref|YP_003450010.1| thioredoxin [Azospirillum sp. B510] gi|288911977|dbj|BAI73466.1| thioredoxin [Azospirillum sp. B510] Length = 185 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 95/190 (50%), Positives = 133/190 (70%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ VL G F+ ++A SPLA R+F I G+ V+ G DF Sbjct: 1 MFIQTEQTPNPATLKFLPGRDVLGRGTADFTGREDAARSPLAQRLFEIEGVVGVFLGADF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 IT+ K D DW L+P +LG+IMEHF + P++ + D + D +V+ Sbjct: 61 ITITKTDARDWFLLKPSILGVIMEHFTADRPVLLE------EGGDGHAAAASADDEEIVE 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRP+VA+DGGDI F+G+ G+V+L+M+GACSGCPS++ TLK+G+ N+L H+ Sbjct: 115 QIKELLDTRVRPSVAQDGGDITFQGFERGVVYLAMKGACSGCPSSTATLKHGIENMLRHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 175 IPEVVEVRAV 184 >gi|197106919|ref|YP_002132296.1| thioredoxin-like protein [Phenylobacterium zucineum HLK1] gi|196480339|gb|ACG79867.1| thioredoxin-like protein [Phenylobacterium zucineum HLK1] Length = 191 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 98/190 (51%), Positives = 129/190 (67%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP LKF+PG+ VL EG F + +EA+ SPLA+ IF I G+ V+FG DF Sbjct: 1 MFIQTEATPNPEVLKFLPGRAVLGEGTRDFGSMEEAQASPLAADIFDIEGVTRVFFGPDF 60 Query: 61 ITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TVGK +DW HL+ PVL IM+HF SG P+ G D+ G + + +V Sbjct: 61 LTVGKHPSFDWPHLKAPVLAAIMDHFTSGRPLFAEAGEQAGGHDE---GAYEGETAQIVA 117 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANILN 177 IK++LD R+RPAVA+DGGDI+F + G+V+L+MRGACSGCPS++ TLK GV N+L Sbjct: 118 EIKDLLDTRIRPAVAQDGGDILFHKFEPDTGVVWLNMRGACSGCPSSTATLKAGVENMLK 177 Query: 178 HFVPEVKDIR 187 H+VPEV + Sbjct: 178 HYVPEVTRVE 187 >gi|258541120|ref|YP_003186553.1| nitrogen fixing thioredoxin-like protein NifU [Acetobacter pasteurianus IFO 3283-01] gi|256632198|dbj|BAH98173.1| nitrogen fixing thioredoxin-like protein NifU [Acetobacter pasteurianus IFO 3283-01] gi|256635255|dbj|BAI01224.1| nitrogen fixing thioredoxin-like protein NifU [Acetobacter pasteurianus IFO 3283-03] gi|256638310|dbj|BAI04272.1| nitrogen fixing thioredoxin-like protein NifU [Acetobacter pasteurianus IFO 3283-07] gi|256641364|dbj|BAI07319.1| nitrogen fixing thioredoxin-like protein NifU [Acetobacter pasteurianus IFO 3283-22] gi|256644419|dbj|BAI10367.1| nitrogen fixing thioredoxin-like protein NifU [Acetobacter pasteurianus IFO 3283-26] gi|256647474|dbj|BAI13415.1| nitrogen fixing thioredoxin-like protein NifU [Acetobacter pasteurianus IFO 3283-32] gi|256650527|dbj|BAI16461.1| nitrogen fixing thioredoxin-like protein NifU [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653518|dbj|BAI19445.1| nitrogen fixing thioredoxin-like protein NifU [Acetobacter pasteurianus IFO 3283-12] Length = 186 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 99/192 (51%), Positives = 132/192 (68%), Gaps = 10/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE-GAIHFSNAKE-AEISPLASRIFSIPGIASVYFGY 58 MFI+TE TPNPATLKF+PGQ V+ + G I F +A A S LA +F++PG++ V+ G Sbjct: 1 MFIETEGTPNPATLKFLPGQAVMGDAGTIDFIDADAVAGRSSLAEALFALPGVSRVFLGN 60 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 DF++V K D DWE LRP +L +M+HF++G P++ G + D + Sbjct: 61 DFVSVTKADSEDWEELRPQILSTLMDHFVAGHPVVAEGVA-------VTEDAIAPEDEEI 113 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +IKE+LD RVRPAVA DGGDIVF+GYR+GIV L+M+GACSGCPS+ TLK+GV N+L Sbjct: 114 VTQIKELLDTRVRPAVAGDGGDIVFRGYRNGIVRLTMQGACSGCPSSRATLKHGVENMLR 173 Query: 178 HFVPEVKDIRTV 189 H+VPEV + V Sbjct: 174 HYVPEVVSVEQV 185 >gi|148555295|ref|YP_001262877.1| scaffold protein Nfu/NifU-like protein [Sphingomonas wittichii RW1] gi|148500485|gb|ABQ68739.1| Scaffold protein Nfu/NifU-like protein [Sphingomonas wittichii RW1] Length = 192 Score = 194 bits (494), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 91/190 (47%), Positives = 134/190 (70%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M I+TE TPNPATLKF+PG+ V+ G F + EA SPLA +FS+ + V+FG DF Sbjct: 4 MLIETEPTPNPATLKFLPGRPVMTTGTRDFVDPDEASASPLAEALFSLGDVTGVFFGRDF 63 Query: 61 ITV-GKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE--SDSAV 117 ++V + +W L+P VLG++++HF S P+ G ++ +DD DF + +D+ + Sbjct: 64 VSVTAAEGVEWTGLKPQVLGVLLDHFSSEAPLFTGGSAAEIAIDD---SDFTDDPADADI 120 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +IK+++D RVRPAVARDGGDIV++G++ G V+LSM+GACSGCPS++ TLK G+ +L Sbjct: 121 VAQIKDLIDTRVRPAVARDGGDIVYRGFQRGTVYLSMQGACSGCPSSAATLKQGIETLLK 180 Query: 178 HFVPEVKDIR 187 H+VPEV ++R Sbjct: 181 HYVPEVTEVR 190 >gi|294085162|ref|YP_003551922.1| nitrogen-fixing NifU domain-containing protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664737|gb|ADE39838.1| nitrogen-fixing NifU domain protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 187 Score = 193 bits (491), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 98/189 (51%), Positives = 129/189 (68%), Gaps = 6/189 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNPATLKFIPG VL +G F A A SP+A R+F + G+A V+ G DF Sbjct: 1 MFIQTQDTPNPATLKFIPGVPVLEQGTADFPAADSAGSSPMARRLFQVDGVAGVFLGGDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I V K D+ DW L+P +L IMEHF SG P+I + G+M + + D V+ Sbjct: 61 IAVTKVDEMDWFALKPSILAGIMEHFASGLPVIEDNA-GNMTDANTDD----DEDDDTVK 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IK +LD RVRPAVA DGGDIVF+ + DG+V L MRGAC GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKHLLDTRVRPAVAMDGGDIVFQDFDDGVVTLQMRGACQGCPSSTATLKMGIENMLKHY 175 Query: 180 VPEVKDIRT 188 +P+V+++R Sbjct: 176 IPQVREVRA 184 >gi|221232999|ref|YP_002515435.1| mitochondrial-type Fe-S cluster assembly protein NFU [Caulobacter crescentus NA1000] gi|220962171|gb|ACL93527.1| mitochondrial-type Fe-S cluster assembly protein NFU [Caulobacter crescentus NA1000] Length = 190 Score = 191 bits (486), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 96/190 (50%), Positives = 128/190 (67%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP LKF+PG+ VL +GA F +E + SPLA +F + ++ V+FG DF Sbjct: 1 MFIQTETTPNPEVLKFLPGREVLGDGAREFRTPEEGDASPLAKALFELGDVSRVFFGPDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + W HL+ P+L IM+HF SG P++ + D+ GD+ E S +V Sbjct: 61 LTVTKGEDAQWPHLKAPILAAIMDHFTSGRPLLLDQTAESGGHDE---GDYDEETSQIVA 117 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+LD R+RPAVA+DGGDIVF + + G+V+L MRGACSGCPS+S TLK GV N+L Sbjct: 118 EIKELLDTRIRPAVAQDGGDIVFSRFEPQTGVVWLHMRGACSGCPSSSATLKSGVENMLK 177 Query: 178 HFVPEVKDIR 187 H+VPEV + Sbjct: 178 HYVPEVTRVE 187 >gi|16124317|ref|NP_418881.1| NifU-like domain-containing protein [Caulobacter crescentus CB15] gi|13421157|gb|AAK22049.1| NifU-like domain protein [Caulobacter crescentus CB15] Length = 224 Score = 191 bits (485), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 96/189 (50%), Positives = 128/189 (67%), Gaps = 6/189 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP LKF+PG+ VL +GA F +E + SPLA +F + ++ V+FG DF Sbjct: 35 MFIQTETTPNPEVLKFLPGREVLGDGAREFRTPEEGDASPLAKALFELGDVSRVFFGPDF 94 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + W HL+ P+L IM+HF SG P++ + D+ GD+ E S +V Sbjct: 95 LTVTKGEDAQWPHLKAPILAAIMDHFTSGRPLLLDQTAESGGHDE---GDYDEETSQIVA 151 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+LD R+RPAVA+DGGDIVF + + G+V+L MRGACSGCPS+S TLK GV N+L Sbjct: 152 EIKELLDTRIRPAVAQDGGDIVFSRFEPQTGVVWLHMRGACSGCPSSSATLKSGVENMLK 211 Query: 178 HFVPEVKDI 186 H+VPEV + Sbjct: 212 HYVPEVTRV 220 >gi|23006361|ref|ZP_00048716.1| COG0694: Thioredoxin-like proteins and domains [Magnetospirillum magnetotacticum MS-1] Length = 184 Score = 190 bits (483), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 91/179 (50%), Positives = 125/179 (69%), Gaps = 5/179 (2%) Query: 13 TLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKDQ--YDW 70 TLKF+PG+VVL EG +A AE SPLAS +F++PG++ VYFG+DFI+V K +W Sbjct: 9 TLKFLPGRVVLTEGTFEARDASSAERSPLASALFAVPGVSGVYFGHDFISVTKADGVNEW 68 Query: 71 EHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVR 130 ++P VLG IM+HF SG P++ G +D + E+D V IK++L+ RVR Sbjct: 69 PQVKPAVLGAIMDHFQSGRPVLAEG---TALAEDDAEEFYDEADHDTVATIKDLLETRVR 125 Query: 131 PAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 PAVA DGGDI F+GYRDGIV+L M+GACSGCPS++ TL+ GV N+ HF+P V++++ V Sbjct: 126 PAVAGDGGDITFRGYRDGIVYLEMKGACSGCPSSTATLRQGVQNLFRHFLPSVREVQAV 184 >gi|167643992|ref|YP_001681655.1| scaffold protein Nfu/NifU [Caulobacter sp. K31] gi|167346422|gb|ABZ69157.1| Scaffold protein Nfu/NifU [Caulobacter sp. K31] Length = 189 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 96/190 (50%), Positives = 126/190 (66%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP LKF+PG+ VL EGA F A+E + SPLA +F + + V+FG DF Sbjct: 1 MFIQTETTPNPEVLKFLPGREVLGEGAREFKTAEEGDASPLAEALFRLGDVNRVFFGPDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + +W HL+ P+L IM+HF SG P++ L + G + E S +V Sbjct: 61 LTVTKAEGAEWPHLKAPILAAIMDHFTSGRPLL----LDQAESGHDNDGVYDEETSQIVA 116 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANILN 177 IK++LD R+RPAVA+DGGDIVF + G+V+L MRGACSGCPS+S TLK GV N+L Sbjct: 117 EIKDLLDTRIRPAVAQDGGDIVFSKFEPATGVVWLHMRGACSGCPSSSATLKAGVENMLK 176 Query: 178 HFVPEVKDIR 187 H+VPEV + Sbjct: 177 HYVPEVTRVE 186 >gi|296282499|ref|ZP_06860497.1| hypothetical protein CbatJ_02705 [Citromicrobium bathyomarinum JL354] Length = 192 Score = 188 bits (478), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 84/190 (44%), Positives = 134/190 (70%), Gaps = 3/190 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M+I+TE TPNPATLKF+P + V+ +G F+N ++AE SPLA +F + V+FG DF Sbjct: 1 MYIETETTPNPATLKFLPQRQVMPQGTRDFANPEDAEASPLAQALFDTGEVTGVFFGSDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKL--DDMGSGDFIESDSAV 117 ++V K + W L+P ++ ++++HF+S P+ H G +++ +D + + +D+ + Sbjct: 61 VSVTKGEGTQWTELKPQIVAVLLDHFVSEAPLFHGGSAAGIEVPAEDTLTVEEDPADADI 120 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +IKE+L+ R+RPAVA DGGDI ++GYRDG+V L ++GAC GCPS++ TLK+G+ +L Sbjct: 121 VDQIKELLETRIRPAVAGDGGDIAYRGYRDGVVHLQLQGACDGCPSSTATLKHGIEGLLK 180 Query: 178 HFVPEVKDIR 187 H+VPEV ++R Sbjct: 181 HYVPEVVEVR 190 >gi|103487552|ref|YP_617113.1| nitrogen-fixing NifU-like protein [Sphingopyxis alaskensis RB2256] gi|98977629|gb|ABF53780.1| nitrogen-fixing NifU-like protein [Sphingopyxis alaskensis RB2256] Length = 190 Score = 188 bits (477), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 89/191 (46%), Positives = 136/191 (71%), Gaps = 3/191 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M I+TE TPNPATLKF+PG+ V+ G F++A+EAE SPLAS +FS+ + V+FG DF Sbjct: 1 MLIETESTPNPATLKFLPGRTVMETGTRDFASAEEAEASPLASALFSLGDVTGVFFGRDF 60 Query: 61 ITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGD-MKLDDMGSGDFIESDSAVV 118 ++V +W ++P VLG++M+HF++G P+ + G + +D G D +D+ ++ Sbjct: 61 VSVTIAPGAEWADVKPDVLGIVMDHFLAGVPLFNAASAGSAVPPEDAGFAD-DPADADII 119 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++IKE+++ RVRPAVA DGGDIV++G+ G V+L M+GAC+GCPS++ TLK G+ ++L H Sbjct: 120 EQIKELIETRVRPAVANDGGDIVYRGFDKGNVYLKMQGACAGCPSSTATLKNGIESLLKH 179 Query: 179 FVPEVKDIRTV 189 +VPEV + V Sbjct: 180 YVPEVTAVHAV 190 >gi|326403969|ref|YP_004284051.1| hypothetical protein ACMV_18220 [Acidiphilium multivorum AIU301] gi|325050831|dbj|BAJ81169.1| hypothetical protein ACMV_18220 [Acidiphilium multivorum AIU301] Length = 185 Score = 188 bits (477), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 99/190 (52%), Positives = 137/190 (72%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFI+T+ TPNPATLKF+PG+ VL +G+ F +A A SPLA +F++PG+ V+ G DF Sbjct: 1 MFIETDVTPNPATLKFLPGREVLGQGSADFDSADAAAASPLAEALFALPGVVRVFLGADF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ++V +D+ +W L+P VLG IMEH++SG P++ ++D+ D +D + Sbjct: 61 VSVTRDEGTEWTSLKPQVLGAIMEHYLSGRPVMAGA---QAEVDE----DVDPADREIAD 113 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA DGGDIVF+G+RDGIV L M+GACSGCPS++ TLK G+ N+L H+ Sbjct: 114 QIKELLDMRVRPAVAGDGGDIVFRGFRDGIVSLHMQGACSGCPSSTATLKMGIENLLKHY 173 Query: 180 VPEVKDIRTV 189 VPEVK +R V Sbjct: 174 VPEVKSVRQV 183 >gi|144900396|emb|CAM77260.1| NifU domain protein [Magnetospirillum gryphiswaldense MSR-1] Length = 182 Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 94/191 (49%), Positives = 140/191 (73%), Gaps = 12/191 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE+TPNP+TLKF+PG+ V+ G F +A+ A SPLA+++F++ G+ASV+ G DF Sbjct: 1 MFIQTENTPNPSTLKFLPGREVMPAGTADFGSAEAAIRSPLAAKLFTVDGVASVFLGGDF 60 Query: 61 ITVGKDQY-DWEHLRPPVLGMIMEHFISGD-PIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITVGK + W L+P +L IM+ F +G P+I+ G + + G+ E+D +V Sbjct: 61 ITVGKTEAATWGTLKPLLLSAIMDFFTAGLLPVINEG------TEKVSDGE--ETD--IV 110 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++IKE+LD RVRPAVA+DGGDI+F+ + DGIV++ ++GACSGCPS++ TLK+G+ N+L + Sbjct: 111 RQIKELLDTRVRPAVAQDGGDIIFRSFDDGIVYVHLQGACSGCPSSTATLKHGIENMLKY 170 Query: 179 FVPEVKDIRTV 189 +VPEV ++ V Sbjct: 171 YVPEVVAVQAV 181 >gi|94498004|ref|ZP_01304568.1| nitrogen-fixing NifU-like protein [Sphingomonas sp. SKA58] gi|94422587|gb|EAT07624.1| nitrogen-fixing NifU-like protein [Sphingomonas sp. SKA58] Length = 194 Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 91/192 (47%), Positives = 135/192 (70%), Gaps = 4/192 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M I+TE TPNPAT+KFIPG+VV+ G F++ +EAE SPLAS +F++ + V+FG DF Sbjct: 4 MLIETEPTPNPATVKFIPGRVVMGAGTRDFASPEEAEASPLASALFTLGDVTGVFFGGDF 63 Query: 61 ITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKL--DDMGSGDFIESDSAV 117 I+V + DW ++P VL +++EHF + P+ G G++ + DD + E D+ + Sbjct: 64 ISVTIGEGSDWRDVKPEVLSILLEHFSANMPLFVAGSAGEIHVPADDDAFAENPE-DAEI 122 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +I+E++D RVRPAVA DGGDI+++G+ G V+L M+GAC+GCPS+S TLK G+ +L Sbjct: 123 VDQIRELIDTRVRPAVANDGGDIIYRGFDKGTVYLKMQGACAGCPSSSATLKNGIEQLLK 182 Query: 178 HFVPEVKDIRTV 189 H+VPEV ++R V Sbjct: 183 HYVPEVTEVRAV 194 >gi|148260770|ref|YP_001234897.1| NifU domain-containing protein [Acidiphilium cryptum JF-5] gi|146402451|gb|ABQ30978.1| nitrogen-fixing NifU domain protein [Acidiphilium cryptum JF-5] Length = 185 Score = 186 bits (473), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 99/190 (52%), Positives = 136/190 (71%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFI+T+ TPNPATLKF+PG+ VL +G+ F +A A SPLA +F++PG+ V+ G DF Sbjct: 1 MFIETDVTPNPATLKFLPGREVLGQGSADFDSADAAAASPLAEALFALPGVVRVFLGADF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ++V +D +W L+P VLG IMEH++SG P++ ++D+ D +D + Sbjct: 61 VSVTRDDGTEWTSLKPQVLGAIMEHYLSGRPVMAGA---QAEVDE----DVDPADREIAD 113 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA DGGDIVF+G+RDGIV L M+GACSGCPS++ TLK G+ N+L H+ Sbjct: 114 QIKELLDMRVRPAVAGDGGDIVFRGFRDGIVSLHMQGACSGCPSSTATLKMGIENLLKHY 173 Query: 180 VPEVKDIRTV 189 VPEVK +R V Sbjct: 174 VPEVKSVRQV 183 >gi|149186788|ref|ZP_01865099.1| hypothetical protein ED21_29856 [Erythrobacter sp. SD-21] gi|148829696|gb|EDL48136.1| hypothetical protein ED21_29856 [Erythrobacter sp. SD-21] Length = 193 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 88/191 (46%), Positives = 131/191 (68%), Gaps = 4/191 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFI+TE TPNPA+LKF+PG+ V+ +G F+N + AE SPLA IF + +V+FG DF Sbjct: 1 MFIETETTPNPASLKFLPGRPVMGQGTREFANPEAAEASPLAQAIFDTGEVVNVFFGGDF 60 Query: 61 ITV-GKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA--- 116 ITV W L+P VL ++++HF+S P+ G G + + +E ++A Sbjct: 61 ITVTSAPGVSWSDLKPQVLSILLDHFVSEAPLFVPGTAGGIAVPAEDEALLVEENAADAD 120 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +V +I E+L+ RVRPAVA DGGDI ++G++DG+V+L ++GACSGCPS++ TLK+G+ +L Sbjct: 121 IVAQINELLETRVRPAVAGDGGDIQYRGFKDGVVYLQLQGACSGCPSSTATLKHGIEGLL 180 Query: 177 NHFVPEVKDIR 187 H+VPEV ++R Sbjct: 181 KHYVPEVVEVR 191 >gi|190571129|ref|YP_001975487.1| NifU domain protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018533|ref|ZP_03334341.1| NifU domain protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357401|emb|CAQ54835.1| NifU domain protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995484|gb|EEB56124.1| NifU domain protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 190 Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 93/191 (48%), Positives = 133/191 (69%), Gaps = 4/191 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAI-HFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ E+TPNP TLKF+PG +L EG FSNA E + S LA +F I + V+FG+D Sbjct: 1 MFIQIEETPNPNTLKFLPGFEILSEGETADFSNADEIKNSKLAVNLFQIEHVVRVFFGHD 60 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FI+V K D+ +W+ ++ +L IM+HF SG G+ D K+ + F E+D +V Sbjct: 61 FISVTKSDRMNWDIVKVEILTTIMDHFTSGGKAFDKEGVSDNKM--LEEEFFNENDIEIV 118 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 RIKE++++ ++PAVA+DGGDI F+GY+DGIV++ ++GACSGCPSA+ TLK GV N+L++ Sbjct: 119 NRIKELMESYIKPAVAQDGGDIKFRGYKDGIVYVELQGACSGCPSAAITLKQGVQNMLSY 178 Query: 179 FVPEVKDIRTV 189 +PEV I T+ Sbjct: 179 HIPEVSGIETM 189 >gi|330991171|ref|ZP_08315124.1| NFU1 iron-sulfur cluster scaffold-like protein [Gluconacetobacter sp. SXCC-1] gi|329761757|gb|EGG78248.1| NFU1 iron-sulfur cluster scaffold-like protein [Gluconacetobacter sp. SXCC-1] Length = 187 Score = 185 bits (470), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 96/193 (49%), Positives = 128/193 (66%), Gaps = 12/193 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH--FSNAKEAEISPLASRIFSIPGIASVYFGY 58 MFI+TEDTPNPATLKF+PG+ ++ GA S A S LA +F + G+A V+FG Sbjct: 1 MFIETEDTPNPATLKFLPGREIMANGATADFISPDSVAGRSRLAELLFDLDGVARVFFGA 60 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE-SDSA 116 DF+ V + D +WE LRP VL ++ ++ +G ++ + D D I D Sbjct: 61 DFVAVTRSDSVEWEGLRPQVLAVLADYLATGQAVVES--------DAQVVEDLIAPGDEE 112 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +VQ+IKE+LD RVRPAVA DGGDIVF+GYRDG+V L+M+GACSGCPS+ TLK+GV N+L Sbjct: 113 IVQQIKELLDTRVRPAVAGDGGDIVFRGYRDGVVRLTMQGACSGCPSSRATLKHGVENML 172 Query: 177 NHFVPEVKDIRTV 189 H+VPEV + V Sbjct: 173 RHYVPEVVSVEQV 185 >gi|329847368|ref|ZP_08262396.1| scaffold protein Nfu/NifU [Asticcacaulis biprosthecum C19] gi|328842431|gb|EGF92000.1| scaffold protein Nfu/NifU [Asticcacaulis biprosthecum C19] Length = 188 Score = 184 bits (468), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 89/194 (45%), Positives = 129/194 (66%), Gaps = 12/194 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP +KF+PGQVVL +G F + EA++SPLA +F I G+++++FG DF Sbjct: 1 MFIQTEATPNPDVIKFLPGQVVLAQGTKQFVSEDEAKVSPLAEALFKIDGVSALFFGSDF 60 Query: 61 ITVGKD---QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 +TV +D W L+PP+L IM+ + SG PI+ ++K + + G+ + Sbjct: 61 LTVRRDPDATLIWAQLKPPILAAIMDFYTSGQPILRE---TEVKTETVYEGEL----GQI 113 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + IK++LD RVRPAVA+DGGDI F + G ++L MRGAC+GCPS+S TL+ GV ++ Sbjct: 114 IAEIKDLLDTRVRPAVAQDGGDIEFDSFDMESGTLYLHMRGACAGCPSSSATLRQGVESL 173 Query: 176 LNHFVPEVKDIRTV 189 + H+VPEV+ I V Sbjct: 174 MKHYVPEVRHIEAV 187 >gi|225629714|ref|ZP_03787679.1| NifU domain protein [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591431|gb|EEH12506.1| NifU domain protein [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 194 Score = 184 bits (468), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 93/191 (48%), Positives = 131/191 (68%), Gaps = 4/191 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ E+TPNP TLKF+PG +L EG FSNA E + S LA+ +F I + V+FG+D Sbjct: 5 MFIQIEETPNPNTLKFLPGFAILNEGETADFSNADEIKNSKLAANLFQIEHVVRVFFGHD 64 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FI+V K +W+ L+ +L IM+HF SG + G+ D + D F E+D +V Sbjct: 65 FISVTKLGGINWDTLKVEILTTIMDHFTSGGKALDKEGVNDNNISD--EEFFDENDIEIV 122 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 RIKE++++ ++PAVA+DGGDI F+GY+DGIV++ ++GACSGCPSA+ TLK GV N+L++ Sbjct: 123 NRIKELMESYIKPAVAQDGGDIKFRGYKDGIVYVELQGACSGCPSAAITLKQGVQNMLSY 182 Query: 179 FVPEVKDIRTV 189 +PEV I T Sbjct: 183 HIPEVAGIETT 193 >gi|307108001|gb|EFN56242.1| hypothetical protein CHLNCDRAFT_48753 [Chlorella variabilis] Length = 209 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 92/192 (47%), Positives = 129/192 (67%), Gaps = 12/192 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNPA+L FIPGQ VL G+ F++A+EA SPLA ++F+I G+ V+FG DF Sbjct: 1 MFIQTQPTPNPASLMFIPGQKVLEGGSKSFTSAREAMASPLAKKLFAIDGVTQVFFGSDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI--ESDSAV 117 +TV K + Y W L+P V IM+H+ SG+ + ++ D G+ + + E D V Sbjct: 61 VTVTKSEDYGWAVLKPDVFAAIMDHYSSGEALFYDE-------QDTGAAEHMIHEDDDEV 113 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE+L+ R+RPAV DGGDIVF+ + G+V L M GACSGCPS++ TLK G+ N+ Sbjct: 114 VAMIKELLETRIRPAVQEDGGDIVFRTWDPESGVVKLKMMGACSGCPSSAVTLKSGIENM 173 Query: 176 LNHFVPEVKDIR 187 L H++PEV+ + Sbjct: 174 LMHYIPEVRGVE 185 >gi|326386713|ref|ZP_08208334.1| nitrogen-fixing NifU-like protein [Novosphingobium nitrogenifigens DSM 19370] gi|326208766|gb|EGD59562.1| nitrogen-fixing NifU-like protein [Novosphingobium nitrogenifigens DSM 19370] Length = 191 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 87/190 (45%), Positives = 132/190 (69%), Gaps = 4/190 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFI+TE TPNPATLKF+PG++V+ +G F++A+EA ISPLA +FS+ + V FG +F Sbjct: 1 MFIETETTPNPATLKFLPGEIVMADGTREFTSAEEAAISPLADALFSLGDVTGVLFGREF 60 Query: 61 ITVG-KDQYDWEHLRPPVLGMIMEHFISGDPII--HNGGLGDMKLDDMGSGDFIESDSAV 117 ++V W +P VL ++++HF+S P+ + G +D GD +D+ + Sbjct: 61 VSVTIAPGSAWSDTKPQVLAVLLDHFVSQAPLFVAASAGFSVPAEEDEDFGD-DPADADI 119 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +I ++++ R+RPAVA DGGDI ++G+RDG+V+L M+GACSGCPS+S TLK G+ +L Sbjct: 120 VDQILDLIETRIRPAVANDGGDISYRGFRDGVVYLRMQGACSGCPSSSATLKNGIEALLK 179 Query: 178 HFVPEVKDIR 187 H+VPEV ++R Sbjct: 180 HYVPEVNEVR 189 >gi|255088633|ref|XP_002506239.1| predicted protein [Micromonas sp. RCC299] gi|226521510|gb|ACO67497.1| predicted protein [Micromonas sp. RCC299] Length = 298 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 92/188 (48%), Positives = 131/188 (69%), Gaps = 9/188 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAI-HFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT+ TPNPA+L F+PG+ V EG +F+N +E SPLA ++F I G+ SV+FG D Sbjct: 94 IFIQTQTTPNPASLMFMPGKPVYEEGGTKNFANPREGMASPLAKKLFLIDGVTSVFFGQD 153 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+TV K ++++W L+P V IM+++ SG+PII + + +L + G+ E D +V Sbjct: 154 FVTVTKSEEHEWGTLKPEVFAAIMDYYASGEPIITD----EAELANAGTA-ITEDDDEIV 208 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+L+ R+RPAVA DGGDIVFKG+ G+V + M+GAC GCPS+S TLK G+ N+L Sbjct: 209 AMIKELLETRIRPAVAEDGGDIVFKGWNADTGVVTVKMQGACDGCPSSSVTLKSGIENML 268 Query: 177 NHFVPEVK 184 H+VPEV Sbjct: 269 RHYVPEVN 276 >gi|83944990|ref|ZP_00957356.1| nifU domain protein [Oceanicaulis alexandrii HTCC2633] gi|83851772|gb|EAP89627.1| nifU domain protein [Oceanicaulis alexandrii HTCC2633] Length = 186 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 94/192 (48%), Positives = 125/192 (65%), Gaps = 10/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTEDTPNP TLKF+PGQ V ++ F+ +EAE S LA +F + G+ V+ G DF Sbjct: 1 MFIQTEDTPNPDTLKFLPGQSVSLDAPRDFATPEEAESSYLARELFRVEGVIRVFAGQDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I+V K + DW H++P VLG IM+ SG + + DD G + + +V+ Sbjct: 61 ISVTKAEGVDWPHIKPAVLGAIMDCLESGKSLFSDA-------DDDGHAAYEGEAAGIVK 113 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILN 177 IK+V+D RVRPAVARDGGDIVF Y + G+V L MRGAC+GCPS++ TLK G+ N+L Sbjct: 114 EIKDVIDTRVRPAVARDGGDIVFHSYDEATGVVNLHMRGACAGCPSSTMTLKQGIENLLK 173 Query: 178 HFVPEVKDIRTV 189 H+VPEV + V Sbjct: 174 HYVPEVSSVEAV 185 >gi|308802059|ref|XP_003078343.1| NifU-like domain-containing proteins (ISS) [Ostreococcus tauri] gi|116056795|emb|CAL53084.1| NifU-like domain-containing proteins (ISS) [Ostreococcus tauri] Length = 244 Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 93/191 (48%), Positives = 127/191 (66%), Gaps = 11/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MF+QT+ TPNP +L F PG+ V EG+ +F +A+EA +SPLA R+F+I G+ +V+ G DF Sbjct: 40 MFVQTQATPNPESLMFQPGRDVYAEGSRNFGSAREAMVSPLARRLFAIDGVTNVFLGVDF 99 Query: 61 ITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIES-DSAVV 118 ITV KD +DWE ++P IM+ + SG+ ++ L G G IE D VV Sbjct: 100 ITVTKDADHDWETVKPRTFEAIMDFYASGEAVVDEASL-------EGHGTAIEEDDDEVV 152 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+L+ R+RPAVA DGGDIVFK Y G+V + + GAC GCPS+S TLK G+ N+L Sbjct: 153 AMIKELLETRIRPAVAEDGGDIVFKAYDQETGVVSVQLMGACDGCPSSSVTLKSGIENML 212 Query: 177 NHFVPEVKDIR 187 H+VPEVK ++ Sbjct: 213 MHYVPEVKGVQ 223 >gi|162147187|ref|YP_001601648.1| nitrogen fixation protein [Gluconacetobacter diazotrophicus PAl 5] gi|209544240|ref|YP_002276469.1| Scaffold protein Nfu/NifU [Gluconacetobacter diazotrophicus PAl 5] gi|161785764|emb|CAP55335.1| putative nitrogen fixation protein [Gluconacetobacter diazotrophicus PAl 5] gi|209531917|gb|ACI51854.1| Scaffold protein Nfu/NifU [Gluconacetobacter diazotrophicus PAl 5] Length = 187 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 95/192 (49%), Positives = 128/192 (66%), Gaps = 10/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH--FSNAKEAEISPLASRIFSIPGIASVYFGY 58 MFI+TEDTPNPATLKF+PG+ ++ A S A S LA +F PG+A V+ G Sbjct: 1 MFIETEDTPNPATLKFLPGRTIVPGRATADFVSPDAVAGRSKLADALFGQPGVARVFLGG 60 Query: 59 DFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 DF+ V KD+ DW L+P +L ++++ F+SG P I + + +L D + Sbjct: 61 DFVAVTKDEATDWSVLKPQLLSVLVDFFVSGMPAIEDDAAVEEEL-------IAPEDEEI 113 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V++IKE+LD RVRPAVA DGGDIVF+GYRDG+V L+M+GACSGCPS+ TLK+GV N+L Sbjct: 114 VRQIKELLDTRVRPAVAGDGGDIVFRGYRDGVVRLTMQGACSGCPSSRATLKHGVENMLR 173 Query: 178 HFVPEVKDIRTV 189 H+VPEV + V Sbjct: 174 HYVPEVVSVEQV 185 >gi|182678037|ref|YP_001832183.1| scaffold protein Nfu/NifU [Beijerinckia indica subsp. indica ATCC 9039] gi|182633920|gb|ACB94694.1| Scaffold protein Nfu/NifU [Beijerinckia indica subsp. indica ATCC 9039] Length = 187 Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 92/189 (48%), Positives = 139/189 (73%), Gaps = 2/189 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ V+ G + A A+ SPLA +F++ G++ V+FG DF Sbjct: 1 MFIQTEATPNPATLKFLPGRPVMRLGTLDIREADGAKKSPLAEALFALEGVSGVFFGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 I+V + Q DW+ ++P VLG IMEH++SG P++ + D++ + G + E+D+ V Sbjct: 61 ISVTRQQGDWQDIKPAVLGAIMEHYLSGAPLLTDE--ADLQPQNDGEEFYAEADAHTVAT 118 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IK+++++ VRPAVA+DGGDI F+G+R+G V+L+M+G+CSGCPS+S TL++GV N+L H+V Sbjct: 119 IKQLIESHVRPAVAKDGGDIKFRGFREGTVYLAMKGSCSGCPSSSATLRHGVQNLLKHYV 178 Query: 181 PEVKDIRTV 189 PEV + + Sbjct: 179 PEVVSVEQI 187 >gi|114571567|ref|YP_758247.1| NifU domain-containing protein [Maricaulis maris MCS10] gi|114342029|gb|ABI67309.1| nitrogen-fixing NifU domain protein [Maricaulis maris MCS10] Length = 187 Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 86/192 (44%), Positives = 131/192 (68%), Gaps = 9/192 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP TLKF+PG+ + +G F + ++A +PLA+ +F + G++ V+FG DF Sbjct: 1 MFIQTEATPNPNTLKFLPGREIAPDGPREFESEEDAASAPLAADLFLVDGVSGVFFGEDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I + K D Y+W+H++P +LG IM+ SG P++ + + ++ G ++ + +V+ Sbjct: 61 IAITKTDAYEWDHIKPFLLGTIMDGLQSGRPLVGS------ETNETGHANYAGENEGLVK 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 I E++D RVRPAVA+DGGDI+F Y GIV L MRGACSGCPS++ TLK G+ N+L Sbjct: 115 EIIELIDTRVRPAVAQDGGDILFHSYLADSGIVRLKMRGACSGCPSSTMTLKSGIENLLK 174 Query: 178 HFVPEVKDIRTV 189 H++PE++ + V Sbjct: 175 HYIPEIQSVEAV 186 >gi|58699011|ref|ZP_00373859.1| NifU domain protein [Wolbachia endosymbiont of Drosophila ananassae] gi|225630807|ref|YP_002727598.1| NifU domain protein [Wolbachia sp. wRi] gi|58534475|gb|EAL58626.1| NifU domain protein [Wolbachia endosymbiont of Drosophila ananassae] gi|225592788|gb|ACN95807.1| NifU domain protein [Wolbachia sp. wRi] Length = 194 Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 91/191 (47%), Positives = 131/191 (68%), Gaps = 4/191 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ E+TPNP TLKF+PG +L EG FSNA E + S LA+ +F I + V+FG+D Sbjct: 5 MFIQIEETPNPNTLKFLPGFEILNEGETTDFSNANEIKNSKLAANLFQIEHVVRVFFGHD 64 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FI+V K +W+ L+ +L IM+HF SG + G+ D + D F ++D +V Sbjct: 65 FISVTKLGGINWDTLKVEILTTIMDHFTSGGKALDKEGVNDNNIPD--EEFFDKNDIEIV 122 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 RIKE++++ ++PAVA+DGGDI F+GY+DGIV++ ++GACSGCPSA+ TLK GV N+L++ Sbjct: 123 NRIKELMESYIKPAVAQDGGDIKFRGYKDGIVYVELQGACSGCPSAAITLKQGVQNMLSY 182 Query: 179 FVPEVKDIRTV 189 +PE+ I T Sbjct: 183 HIPEIAGIETT 193 >gi|58697437|ref|ZP_00372735.1| NifU domain protein [Wolbachia endosymbiont of Drosophila simulans] gi|58536136|gb|EAL59746.1| NifU domain protein [Wolbachia endosymbiont of Drosophila simulans] Length = 190 Score = 181 bits (459), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 91/191 (47%), Positives = 131/191 (68%), Gaps = 4/191 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ E+TPNP TLKF+PG +L EG FSNA E + S LA+ +F I + V+FG+D Sbjct: 1 MFIQIEETPNPNTLKFLPGFEILNEGETTDFSNANEIKNSKLAANLFQIEHVVRVFFGHD 60 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FI+V K +W+ L+ +L IM+HF SG + G+ D + D F ++D +V Sbjct: 61 FISVTKLGGINWDTLKVEILTTIMDHFTSGGKALDKEGVNDNNIPD--EEFFDKNDIEIV 118 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 RIKE++++ ++PAVA+DGGDI F+GY+DGIV++ ++GACSGCPSA+ TLK GV N+L++ Sbjct: 119 NRIKELMESYIKPAVAQDGGDIKFRGYKDGIVYVELQGACSGCPSAAITLKQGVQNMLSY 178 Query: 179 FVPEVKDIRTV 189 +PE+ I T Sbjct: 179 HIPEIAGIETT 189 >gi|85374519|ref|YP_458581.1| hypothetical protein ELI_08460 [Erythrobacter litoralis HTCC2594] gi|84787602|gb|ABC63784.1| hypothetical protein ELI_08460 [Erythrobacter litoralis HTCC2594] Length = 192 Score = 180 bits (457), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 88/194 (45%), Positives = 132/194 (68%), Gaps = 11/194 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFI+TE TPNP+TLKF+PGQ V+ G F++ +EAE SPLA IF + +V+FG DF Sbjct: 1 MFIETETTPNPSTLKFLPGQQVMPGGTREFTSPEEAEASPLAQAIFDTGEVTNVFFGSDF 60 Query: 61 ITV-GKDQYDWEHLRPPVLGMIMEHFISGDPIIHNG---GLGDMKLDDMGSGDFIES--- 113 ++V DW L+ V+ ++++HF+S P+ G G+ DD+ +E Sbjct: 61 VSVSAAPGADWSSLKGMVVSILLDHFVSQAPLFVGGDASGISVPAEDDL----LVEENAD 116 Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 D+ +V +I E+L+ RVRPAVA DGGDI ++G++DG+V+L+++GACSGCPS++ TLK G+ Sbjct: 117 DADIVAQINELLETRVRPAVAGDGGDIAYRGFKDGVVYLTLQGACSGCPSSTATLKQGIE 176 Query: 174 NILNHFVPEVKDIR 187 +L H+VPEV ++R Sbjct: 177 GLLKHYVPEVVEVR 190 >gi|42520881|ref|NP_966796.1| NifU domain-containing protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410621|gb|AAS14730.1| NifU domain protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 191 Score = 180 bits (456), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 92/191 (48%), Positives = 130/191 (68%), Gaps = 7/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAI-HFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ E+TPNP TLKF+PG +L EG FSNA E + S LA+ +F I + V+FG+D Sbjct: 5 MFIQIEETPNPNTLKFLPGFEILNEGETADFSNANEIKNSKLAANLFQIEHVVRVFFGHD 64 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FI+V K D +W+ L+ VL IM HF SG L +++D F ++D +V Sbjct: 65 FISVTKLDGINWDILKVEVLTTIMNHFTSGGK-----ALDKEEVNDPDEEFFDKNDIEIV 119 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 RIKE++++ ++PAVA+DGGDI F+GY+DGIV++ ++GACSGCPSA+ TLK GV N+L++ Sbjct: 120 NRIKELMESHIKPAVAQDGGDIKFRGYKDGIVYVELQGACSGCPSAAITLKQGVQNMLSY 179 Query: 179 FVPEVKDIRTV 189 +PE+ I T Sbjct: 180 HIPEIAGIETT 190 >gi|85709112|ref|ZP_01040178.1| possible NifU-like domain protein [Erythrobacter sp. NAP1] gi|85690646|gb|EAQ30649.1| possible NifU-like domain protein [Erythrobacter sp. NAP1] Length = 193 Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 83/197 (42%), Positives = 131/197 (66%), Gaps = 16/197 (8%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFI+TE TPNP++LKF+PG+ V+ G F++ + AE SPLA IF + +V++G+DF Sbjct: 1 MFIETETTPNPSSLKFLPGRAVMPSGTREFASPEAAEASPLAQAIFDTGEVVNVFYGWDF 60 Query: 61 ITV-GKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGL---------GDMKLDDMGSGDF 110 +TV DW L+P V ++++HF+S P+ G +M ++D Sbjct: 61 VTVTAAPGVDWSALKPQVHAILLDHFVSEAPLFVGGTADGISVPPEEAEMVVEDR----- 115 Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 E D+ ++ I E+L+ RVRPAVA DGGDI ++G+ DG+V+L+++GAC+GCPS++ TLK+ Sbjct: 116 -EEDAEIIASINELLETRVRPAVAGDGGDIAYRGFSDGVVYLTLQGACAGCPSSTATLKH 174 Query: 171 GVANILNHFVPEVKDIR 187 G+ ++L H+VPEV ++R Sbjct: 175 GIESLLKHYVPEVVEVR 191 >gi|307293136|ref|ZP_07572982.1| Scaffold protein Nfu/NifU [Sphingobium chlorophenolicum L-1] gi|306881202|gb|EFN12418.1| Scaffold protein Nfu/NifU [Sphingobium chlorophenolicum L-1] Length = 190 Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 86/190 (45%), Positives = 126/190 (66%), Gaps = 1/190 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M I+TE TPNPAT+KF+PG+VV+ G F+ +EAE SPLA +F + + V+FG DF Sbjct: 1 MLIETEATPNPATVKFLPGRVVMGMGTRDFATPEEAEASPLADALFGLGDVTGVFFGGDF 60 Query: 61 ITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I+V W ++P +L +++EHF P+ G GD+ + + D+ +V Sbjct: 61 ISVTIAPGAQWSDVKPDILSILLEHFSVNMPLFAPGSAGDIFVPEEEEFADDPEDAEIVS 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +I+E++D RVRPAVA DGGDIV++G+ G V+L M+GACSGCPS++ TLK G+ +L H+ Sbjct: 121 QIRELIDTRVRPAVANDGGDIVYRGFDKGTVYLRMQGACSGCPSSTATLKNGIEQLLKHY 180 Query: 180 VPEVKDIRTV 189 VPEV ++R V Sbjct: 181 VPEVTEVRAV 190 >gi|159465189|ref|XP_001690805.1| iron-sulfur cluster assembly protein [Chlamydomonas reinhardtii] gi|158279491|gb|EDP05251.1| iron-sulfur cluster assembly protein [Chlamydomonas reinhardtii] Length = 319 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 89/191 (46%), Positives = 127/191 (66%), Gaps = 12/191 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +L F+PG+ V+ G + F +A+E SPLA ++F++ GI SV+FG DF Sbjct: 84 MFIQTQPTPNPNSLMFVPGKPVMQSGTMEFGSAREGMKSPLAKKLFAVDGITSVFFGSDF 143 Query: 61 ITV-GKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI--ESDSAV 117 +T+ KD+Y W L+P V IME + SG+ +I + D + + D DS V Sbjct: 144 VTITKKDEYSWPVLKPDVFAAIMEFYASGEALISDA-------DALAASDTAIHPDDSEV 196 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE+L+ R+RPAV DGGDIVFKG+ + G+V + + GACS CPS++ TLK G+ N+ Sbjct: 197 VAMIKELLETRIRPAVQEDGGDIVFKGFEEDTGMVQVKLVGACSTCPSSTVTLKNGIENM 256 Query: 176 LNHFVPEVKDI 186 L H++PEVK + Sbjct: 257 LMHYIPEVKGV 267 >gi|58584670|ref|YP_198243.1| NifU family protein [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418986|gb|AAW71001.1| NifU family protein containing thioredoxin-like domain [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 190 Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 92/191 (48%), Positives = 128/191 (67%), Gaps = 4/191 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE-GAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ E+TPNP TLKF+PG +L E FSN E + S LA+ +F I + V+FG+D Sbjct: 1 MFIQIEETPNPNTLKFLPGFAILNERETADFSNPDEIKNSKLAADLFQIEHVIRVFFGHD 60 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FI+V K D W+ L+ +L +M+HF SG + G+ D + D F E+D +V Sbjct: 61 FISVTKSDGISWDILKVEILTTVMDHFTSGGKALDRKGVNDNNIPD--EEFFDENDIEIV 118 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 RIKE+++N ++PAVA+DGGDI F+GY+DGIV++ ++GACSGCPSA+ TLK GV N+L + Sbjct: 119 NRIKELMENYIKPAVAQDGGDIKFRGYKDGIVYVELQGACSGCPSAAITLKQGVQNMLCY 178 Query: 179 FVPEVKDIRTV 189 +PEV I T Sbjct: 179 HIPEVSGIETT 189 >gi|294012036|ref|YP_003545496.1| nitrogen-fixing NifU-like protein [Sphingobium japonicum UT26S] gi|292675366|dbj|BAI96884.1| nitrogen-fixing NifU-like protein [Sphingobium japonicum UT26S] Length = 190 Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 85/190 (44%), Positives = 125/190 (65%), Gaps = 1/190 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M I+TE TPNPAT+KFIPG+VV+ G F+ +EAE SPLA +F + + V+FG DF Sbjct: 1 MLIETEATPNPATVKFIPGRVVMGMGTRDFATPEEAEASPLADALFGLGDVTGVFFGGDF 60 Query: 61 ITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I+V W ++P +L +++EHF + P+ G G++ + D +V Sbjct: 61 ISVTIAPGAQWSDVKPDILSILLEHFSANMPLFRPGSAGEIFVPQEEEFADDPEDEEIVA 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +I+E++D RVRPAVA DGGDI+++G+ G V+L M+GACSGCPS++ TLK G+ +L H+ Sbjct: 121 QIRELIDTRVRPAVANDGGDIIYRGFDKGTVYLRMQGACSGCPSSTATLKNGIEQLLKHY 180 Query: 180 VPEVKDIRTV 189 VPEV ++R V Sbjct: 181 VPEVTEVRAV 190 >gi|145344446|ref|XP_001416743.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576969|gb|ABO95036.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 206 Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 90/190 (47%), Positives = 125/190 (65%), Gaps = 11/190 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +L F PG+ V EG+ +FSNA+EA SPLA R+F+I G+ +V+FG DF Sbjct: 1 MFIQTQTTPNPMSLMFQPGREVYAEGSKNFSNAREAMASPLAKRLFAIEGVTNVFFGIDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI-ESDSAVV 118 +TV K + +WE ++P I + SG+ ++ L SG I E D +V Sbjct: 61 VTVTKGEDAEWETVKPQTFEAITNFYASGETVMDEEKLA-------ASGTAIAEDDDEIV 113 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+L+ R+RPAVA DGGDIVFK + G+V + ++G+C GCPS+S TLK G+ N+L Sbjct: 114 AMIKELLETRIRPAVAEDGGDIVFKAFDPESGLVTVQLQGSCDGCPSSSVTLKSGIENML 173 Query: 177 NHFVPEVKDI 186 H+VPEVK + Sbjct: 174 MHYVPEVKGV 183 >gi|329891163|ref|ZP_08269506.1| scaffold protein Nfu/NifU family protein [Brevundimonas diminuta ATCC 11568] gi|328846464|gb|EGF96028.1| scaffold protein Nfu/NifU family protein [Brevundimonas diminuta ATCC 11568] Length = 185 Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 84/193 (43%), Positives = 126/193 (65%), Gaps = 13/193 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP LKF+PG+ V V+ + + EA SPLA +F + G+ V+FG D+ Sbjct: 1 MFIQTEATPNPNALKFLPGRDVAVQDVLEYRTIDEAAASPLAEALFELEGVEGVFFGADY 60 Query: 61 ITVGKDQY--DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +++ + + DW ++ P+L +IM+HF+SG P++ G+ +D G D+ +V Sbjct: 61 VSITRAAHGPDWTEMKAPILSVIMDHFVSGAPLVRE---GETATEDAG------EDTEIV 111 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 IK +LD+R+RPAVA+DGGDI+F + + G++ L MRGAC+GCPS+S TLK GV ++ Sbjct: 112 AEIKSLLDSRIRPAVAQDGGDILFDHFDEETGVLRLRMRGACAGCPSSSATLKAGVEQMM 171 Query: 177 NHFVPEVKDIRTV 189 H+VPEV + V Sbjct: 172 RHYVPEVTSVEQV 184 >gi|197128017|gb|ACH44515.1| putative iron-sulfur cluster scaffold protein Nfu variant 3 [Taeniopygia guttata] Length = 252 Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 87/189 (46%), Positives = 121/189 (64%), Gaps = 9/189 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + FS A SPLA ++F I G+ SV+FG DF Sbjct: 55 MFIQTQDTPNPNSLKFIPGRAVLESRTMEFSTPAAAYCSPLARQLFRIEGVKSVFFGPDF 114 Query: 61 ITVGKDQ--YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K+ DW L+P + IM+ F SG P++ + + D S E D VV Sbjct: 115 ITITKESEDLDWNLLKPDIYATIMDFFASGLPVVTDEA---SRTDTAAS----EEDDEVV 167 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 168 LMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVLLKLQGSCTSCPSSLITLKSGIQNMLQF 227 Query: 179 FVPEVKDIR 187 ++PEV+ + Sbjct: 228 YIPEVEGVE 236 >gi|321470871|gb|EFX81846.1| hypothetical protein DAPPUDRAFT_49825 [Daphnia pulex] Length = 206 Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 88/192 (45%), Positives = 126/192 (65%), Gaps = 11/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPG-QVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MF+QT+DTPNP +LKF+PG QVVL + F A+ SPLA +F I G+ SV+ G D Sbjct: 1 MFVQTQDTPNPNSLKFLPGVQVVLESETMDFPTLSSAQCSPLAKLLFRIEGVKSVFLGPD 60 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 FIT+ K ++ DW+ ++ V IM+ F SG P+++ G + D G+ E D+ Sbjct: 61 FITITKIDEETDWKTIKAEVFATIMDFFTSGLPVVNEG----INQPDNGN----EEDNDT 112 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IKE+LD+R+RP V DGGD+VFKG++DGIV+L ++G+C+ CPS+ TLK GV N+L Sbjct: 113 VLMIKELLDSRIRPTVQEDGGDLVFKGFKDGIVYLKLQGSCTSCPSSMVTLKNGVQNMLQ 172 Query: 178 HFVPEVKDIRTV 189 ++PEV + V Sbjct: 173 FYIPEVIAVEQV 184 >gi|194763845|ref|XP_001964043.1| GF20932 [Drosophila ananassae] gi|263505256|sp|B3MRT7|NFU1_DROAN RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; Flags: Precursor gi|190618968|gb|EDV34492.1| GF20932 [Drosophila ananassae] Length = 286 Score = 177 bits (450), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 89/191 (46%), Positives = 121/191 (63%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G H F + A SPLA +F + G+ +V+FG D Sbjct: 67 MFIQTQDTPNPESLKFLPGVEVLGKGNTHDFPSGTTAHGSPLAKLLFRVEGVRAVFFGAD 126 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FIT+ K++ +W ++P V +IM+ F SG PI+H + +E D V Sbjct: 127 FITISKEEGAEWSLIKPEVFAVIMDFFASGLPILHESTPN-------ADTEILEDDDETV 179 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF GY +GIV L M+G+CS CPS+ TLK GV N+L Sbjct: 180 MMIKELLDTRIRPTVQEDGGDIVFMGYENGIVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 240 YIPEVESVEQV 250 >gi|224080725|ref|XP_002196481.1| PREDICTED: putative iron-sulfur cluster scaffold protein Nfu variant 3 [Taeniopygia guttata] Length = 252 Score = 177 bits (450), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 87/188 (46%), Positives = 121/188 (64%), Gaps = 9/188 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + FS A SPLA ++F I G+ SV+FG DF Sbjct: 55 MFIQTQDTPNPNSLKFIPGRAVLESRTMEFSTPAAAYCSPLARQLFRIEGVKSVFFGPDF 114 Query: 61 ITVGKDQ--YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K+ DW L+P + IM+ F SG P++ + + D S E D VV Sbjct: 115 ITITKESEDLDWNLLKPDIYATIMDFFASGLPVVTDEA---PRTDTAAS----EEDDEVV 167 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 168 LMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVLLKLQGSCTSCPSSLITLKSGIQNMLQF 227 Query: 179 FVPEVKDI 186 ++PEV+ + Sbjct: 228 YIPEVEGV 235 >gi|302832552|ref|XP_002947840.1| hypothetical protein VOLCADRAFT_88148 [Volvox carteri f. nagariensis] gi|300266642|gb|EFJ50828.1| hypothetical protein VOLCADRAFT_88148 [Volvox carteri f. nagariensis] Length = 314 Score = 177 bits (449), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 88/191 (46%), Positives = 127/191 (66%), Gaps = 12/191 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +L F+PG+ V+ G + FS+A+E SPLA ++F+I GI SV+FG DF Sbjct: 82 MFIQTQPTPNPNSLMFVPGKPVMESGTLEFSSAREGMKSPLAKKLFAIDGITSVFFGSDF 141 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI--ESDSAV 117 +TV K D + W L+P + IM+ + SG+P++ + + S D DS V Sbjct: 142 VTVTKRDDFTWPVLKPDIFAAIMDFYSSGEPLVSDAAA-------LASSDTAIHPDDSEV 194 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE+L+ R+RPAV DGGDIV+KG+ + G+V + + GACS CPS++ TLK G+ N+ Sbjct: 195 VAMIKELLETRIRPAVQEDGGDIVYKGFEEDTGMVMVKLVGACSTCPSSTVTLKNGIENM 254 Query: 176 LNHFVPEVKDI 186 L H++PEVK + Sbjct: 255 LMHYIPEVKGV 265 >gi|241156886|ref|XP_002407882.1| conserved hypothetical protein [Ixodes scapularis] gi|215494245|gb|EEC03886.1| conserved hypothetical protein [Ixodes scapularis] Length = 260 Score = 177 bits (449), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 86/191 (45%), Positives = 123/191 (64%), Gaps = 6/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT++TPNP LKF+P VL +G F A+ SPLA +F + G+ +V+FG DF Sbjct: 48 MFIQTQETPNPNCLKFLPNVKVLEQGTRDFPTLASAKDSPLAKHLFRVEGVKAVFFGSDF 107 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K D+ +W+ L+P + IM+ F +G P+++ G + D E DS V Sbjct: 108 ITVTKADDETEWQVLKPHLYAAIMDFFTTGLPVVNEDGTEPVAEDTRPK----EDDSETV 163 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+++ R+RP V DGGDIV+ G+ DG+V L ++G+C+GCPS+S TLK G+ N+L Sbjct: 164 LMIKELIETRIRPTVQEDGGDIVYMGFEDGVVKLKLQGSCTGCPSSSVTLKAGIQNMLQF 223 Query: 179 FVPEVKDIRTV 189 +VPEVKD+ V Sbjct: 224 YVPEVKDVEQV 234 >gi|296114423|ref|ZP_06833077.1| Scaffold protein Nfu/NifU [Gluconacetobacter hansenii ATCC 23769] gi|295979184|gb|EFG85908.1| Scaffold protein Nfu/NifU [Gluconacetobacter hansenii ATCC 23769] Length = 187 Score = 177 bits (448), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 96/193 (49%), Positives = 131/193 (67%), Gaps = 12/193 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAI-HFSNAKE-AEISPLASRIFSIPGIASVYFGY 58 MFI+TEDTPNPATLKF+PG+ ++ GA F +A A S LA +F + G++ V+FG Sbjct: 1 MFIETEDTPNPATLKFLPGRELMPNGATADFIDADSVAGRSRLAEVLFDLEGVSRVFFGG 60 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGD-PIIHNGGLGDMKLDDMGSGDFIESDSA 116 DF+ V K D W+ L+P VL ++ ++ +G P+ H + + D + GD Sbjct: 61 DFVAVTKADTVAWDELKPQVLSVVADYLATGQAPVEHEAVVIE---DAIAPGD-----EE 112 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +V++IKE+LD RVRPAVA DGGDIVF+GYRDGIV L+M+GACSGCPS+ TLK+GV N+L Sbjct: 113 IVKQIKELLDTRVRPAVAGDGGDIVFRGYRDGIVRLTMQGACSGCPSSRATLKHGVENML 172 Query: 177 NHFVPEVKDIRTV 189 H+VPEV + V Sbjct: 173 RHYVPEVVSVEQV 185 >gi|87199010|ref|YP_496267.1| nitrogen-fixing NifU-like [Novosphingobium aromaticivorans DSM 12444] gi|87134691|gb|ABD25433.1| nitrogen-fixing NifU-like protein [Novosphingobium aromaticivorans DSM 12444] Length = 195 Score = 176 bits (447), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 84/190 (44%), Positives = 128/190 (67%), Gaps = 3/190 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFI+TE TPNPATLKF+PG+ V+ G F + +EAE SPLA +F + + V FG DF Sbjct: 4 MFIETETTPNPATLKFLPGEQVMASGTREFVSHEEAEASPLAQALFDLGDVTGVLFGRDF 63 Query: 61 ITV-GKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ++V W L+P VL ++++HF++ P+ G G + + DF + + Sbjct: 64 VSVTAAPGVAWADLKPQVLSLLLDHFVAQAPLFAPGSAGGIVVPADADEDFADDPADADI 123 Query: 120 --RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +IK++++ RVRPAVA DGGDI+++G+R+G+V+L M+GACSGCPS++ TLK G+ ++L Sbjct: 124 IDQIKDLIETRVRPAVANDGGDIIYRGFREGVVYLKMQGACSGCPSSTATLKNGIESLLK 183 Query: 178 HFVPEVKDIR 187 H+VPEV ++R Sbjct: 184 HYVPEVSEVR 193 >gi|58039243|ref|YP_191207.1| NifU protein [Gluconobacter oxydans 621H] gi|58001657|gb|AAW60551.1| NifU protein [Gluconobacter oxydans 621H] Length = 212 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 94/192 (48%), Positives = 123/192 (64%), Gaps = 10/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA-IHFSNAK-EAEISPLASRIFSIPGIASVYFGY 58 MFI+TEDTPNPATLKF+PG+ V + + F +A A S LAS +F P + V+ G Sbjct: 26 MFIETEDTPNPATLKFLPGRSVTGDARPVDFGDADVAAGRSELASALFDQPNVRRVFLGG 85 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 DF++V K D W L+P VLG I F SG P++ D D+ V Sbjct: 86 DFVSVTKSDDISWGDLKPVVLGTITTFFESGRPVLSGTQAAPEH-------DVSPEDAEV 138 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V RI+++LD RVRPAVA DGGDI F+GY+DG+V+L+M+GACSGCPS+ TLK+GV N+L Sbjct: 139 VSRIQDLLDTRVRPAVAGDGGDIAFRGYKDGVVYLAMQGACSGCPSSRATLKHGVENMLR 198 Query: 178 HFVPEVKDIRTV 189 H+VPEV + V Sbjct: 199 HYVPEVASVEQV 210 >gi|332188730|ref|ZP_08390443.1| nitrogen-fixing NifU-like protein [Sphingomonas sp. S17] gi|332011236|gb|EGI53328.1| nitrogen-fixing NifU-like protein [Sphingomonas sp. S17] Length = 190 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 86/191 (45%), Positives = 129/191 (67%), Gaps = 3/191 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M I+TE TPNPATLKF+PG+ V+ G F++ +EA SPLA IF++ + V+FG DF Sbjct: 1 MLIETEPTPNPATLKFLPGRKVMDSGTRDFASPEEAAASPLAEAIFNLGDVTGVFFGRDF 60 Query: 61 ITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLG-DMKLDDMGSGDFIESDSAVV 118 ++V DW ++P VLG++++HF + P+ G + ++ D E D+ +V Sbjct: 61 VSVTIAPGVDWSDVKPDVLGILLDHFSAQMPLFKQGAADFAVPAEEETFADNPE-DADIV 119 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +I+E++D RVRPAVA DGGDIV++G+ G V+L M+GAC+GCPS++ TLK G+ +L H Sbjct: 120 AQIRELIDTRVRPAVANDGGDIVYRGFDKGKVYLKMQGACAGCPSSTATLKNGIEQLLRH 179 Query: 179 FVPEVKDIRTV 189 +VPEV ++R V Sbjct: 180 YVPEVTEVRAV 190 >gi|91089707|ref|XP_974909.1| PREDICTED: similar to AGAP000598-PA [Tribolium castaneum] gi|270011317|gb|EFA07765.1| hypothetical protein TcasGA2_TC005319 [Tribolium castaneum] Length = 244 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 90/193 (46%), Positives = 125/193 (64%), Gaps = 12/193 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT++TPNP +LKF+PG VL EG I F N + A SPL +F I G+ SV+ G + Sbjct: 49 MFIQTQETPNPNSLKFLPGVKVLEEGQTIDFPNGQAAYCSPLGKLLFRIEGVKSVFLGPE 108 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGL-GDMKLDDMGSGDFIESDSA 116 FITV K D+ +W+ ++P + IM+ F SG P++++ D +++ E DS Sbjct: 109 FITVTKTDDEIEWKIIKPEIFATIMDFFASGLPVLNDATPNADTQIN--------EDDSE 160 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +VQ IKE+LD R+RP V DGGDI+F GY DGIV L ++GAC+ CPS+ TLK GV N+L Sbjct: 161 IVQMIKELLDTRIRPTVQEDGGDIIFMGYDDGIVKLKLQGACTSCPSSIVTLKNGVQNML 220 Query: 177 NHFVPEVKDIRTV 189 ++PEV + V Sbjct: 221 QFYIPEVLGVEQV 233 >gi|315497209|ref|YP_004086013.1| scaffold protein nfu/nifu [Asticcacaulis excentricus CB 48] gi|315415221|gb|ADU11862.1| Scaffold protein Nfu/NifU [Asticcacaulis excentricus CB 48] Length = 188 Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 91/194 (46%), Positives = 127/194 (65%), Gaps = 12/194 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP LKFIPG+ VL +G++ F +AE SPLA +F I G++ VYFG DF Sbjct: 1 MFIQTEATPNPDVLKFIPGREVLGKGSMEFRTETDAEKSPLALSLFQIDGVSGVYFGSDF 60 Query: 61 ITVGKDQYD---WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 +TV +D W ++ P+L IM+ + SG I++ G + + + G+ + + Sbjct: 61 LTVKRDAEAGLIWAQIKAPILAAIMDFYASGRAILNEEGAVNERTYE---GEVAQ----I 113 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANI 175 V IK++LD RVRPAVA+DGGDI F+ + G ++L MRGACSGCPS+S TL+ GV ++ Sbjct: 114 VLEIKDLLDTRVRPAVAQDGGDIEFEHFDIESGTLYLHMRGACSGCPSSSATLRQGVESL 173 Query: 176 LNHFVPEVKDIRTV 189 + H+VPEVK I V Sbjct: 174 MKHYVPEVKTIEQV 187 >gi|224097626|ref|XP_002311017.1| predicted protein [Populus trichocarpa] gi|222850837|gb|EEE88384.1| predicted protein [Populus trichocarpa] Length = 198 Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 89/190 (46%), Positives = 121/190 (63%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +L F PG+ ++ G+ F NA+ A SPLA I+ I GI V+FG DF Sbjct: 4 MFIQTQSTPNPLSLMFHPGKPIMDVGSADFPNARSAMNSPLAKSIYEIDGITRVFFGSDF 63 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D WE L P + IM+ + SG+P+ + K + E DS V Sbjct: 64 VTVTKSDDASWEFLEPEIFAAIMDFYSSGEPLFQDSKTASAKDTAIS-----EDDSETVT 118 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ + G+V L+M+GACSGCPS+S TLK G+ N+L Sbjct: 119 MIKELLETRIRPAVQDDGGDIEYRGFDEETGVVKLTMQGACSGCPSSSVTLKSGIENMLM 178 Query: 178 HFVPEVKDIR 187 H+VPEVK + Sbjct: 179 HYVPEVKGVE 188 >gi|312384995|gb|EFR29592.1| hypothetical protein AND_01304 [Anopheles darlingi] Length = 214 Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 87/191 (45%), Positives = 118/191 (61%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL G + F N A+ SPLA +F I G+ SV+FG D Sbjct: 1 MFIQTQDTPNPHSLKFLPGVTVLDAGQTMDFPNVSSAQCSPLAKLLFRIEGVRSVFFGAD 60 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+T+ K + +W ++P +IM+ F SG P++ + S E D V Sbjct: 61 FVTISKVEDAEWSIIKPETFAVIMDFFASGLPVVTGANPNN-------STQINEDDDETV 113 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 Q IKE+LD R+RP V DGGDI+F G+ DG+V L M+G+CS CPS+ TLK GV N+L Sbjct: 114 QMIKELLDTRIRPTVQEDGGDIIFMGFDDGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 173 Query: 179 FVPEVKDIRTV 189 ++PEV + V Sbjct: 174 YIPEVVSVEQV 184 >gi|291386642|ref|XP_002709869.1| PREDICTED: HIRA interacting protein 5 [Oryctolagus cuniculus] Length = 255 Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 88/192 (45%), Positives = 123/192 (64%), Gaps = 12/192 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 60 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPASAFRSPLARQLFRIEGVKSVFFGPDF 119 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDF-IESDSAV 117 IT+ KD + DW L+P + IM+ F SG P++ ++ SG+ E D V Sbjct: 120 ITITKDNEELDWNLLKPDIYATIMDFFASGLPLV---------TEETSSGEAGSEEDDEV 170 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 171 VAMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQ 230 Query: 178 HFVPEVKDIRTV 189 ++PEV+ + V Sbjct: 231 FYIPEVEGVEQV 242 >gi|57529447|ref|NP_001006305.1| NFU1 iron-sulfur cluster scaffold homolog, mitochondrial [Gallus gallus] gi|53136898|emb|CAG32778.1| hypothetical protein RCJMB04_35n21 [Gallus gallus] Length = 232 Score = 174 bits (441), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 87/189 (46%), Positives = 121/189 (64%), Gaps = 9/189 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + FS+ A SPLA ++F I G+ SV+FG DF Sbjct: 35 MFIQTQDTPNPNSLKFIPGKEVLESRTMEFSSPAAAFCSPLARQLFRIEGVKSVFFGPDF 94 Query: 61 ITVGKDQ--YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K+ DW L+P + IM+ F SG P++ + D S E D VV Sbjct: 95 ITITKESEDLDWNLLKPDIYATIMDFFASGLPVLTEEA---PRTDTAQS----EEDDEVV 147 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 148 LMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 207 Query: 179 FVPEVKDIR 187 ++PEV+ + Sbjct: 208 YIPEVEGVE 216 >gi|170016007|ref|NP_001116180.1| NFU1 iron-sulfur cluster scaffold homolog, mitochondrial [Danio rerio] gi|169158109|emb|CAQ14737.1| HIRA interacting protein 5 [Danio rerio] Length = 243 Score = 174 bits (441), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 87/191 (45%), Positives = 124/191 (64%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKF+PG+ VL G + F+ ++A SPLA ++F I G+ SV+FG DF Sbjct: 51 MFIQTQDTPNPNSLKFLPGRAVLDSGTMDFAGPRDAFCSPLARQLFRIDGVKSVFFGPDF 110 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K + +W+ ++P V IM+ F SG P+I+ D D E D VV Sbjct: 111 ITITKTSGETEWKVIKPDVFATIMDFFTSGLPVINEA---DAPRADTAPS---EDDDEVV 164 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++ G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 165 AMIKELLDTRIRPTVQEDGGDVLYHGFEDGIVKLKLQGSCTSCPSSIITLKNGIQNMLQF 224 Query: 179 FVPEVKDIRTV 189 +VPEV+ + V Sbjct: 225 YVPEVEGVEQV 235 >gi|195392814|ref|XP_002055049.1| GJ19011 [Drosophila virilis] gi|263505537|sp|B4M375|NFU1_DROVI RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; Flags: Precursor gi|194149559|gb|EDW65250.1| GJ19011 [Drosophila virilis] Length = 298 Score = 174 bits (441), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 88/191 (46%), Positives = 121/191 (63%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G + F + A SPLA +F + G+ +V+FG D Sbjct: 75 MFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPSGSAAHCSPLAKLLFRVEGVRAVFFGGD 134 Query: 60 FITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FIT+ K++ +W ++P V +IM+ F SG P+IH + +E D V Sbjct: 135 FITISKEESGEWGLIKPEVFAVIMDFFASGLPVIHEARPN-------ADTEILEDDDETV 187 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF GY +GIV L M+G+CS CPS+ TLK GV N+L Sbjct: 188 MMIKELLDTRIRPTVQEDGGDIVFMGYENGIVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 247 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 248 YIPEVESVEQV 258 >gi|37681825|gb|AAQ97790.1| HIRA interacting protein 5 [Danio rerio] gi|62205090|gb|AAH92670.1| HIRA interacting protein 5 [Danio rerio] gi|182891738|gb|AAI65097.1| Hirip5 protein [Danio rerio] Length = 243 Score = 174 bits (441), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 86/191 (45%), Positives = 124/191 (64%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKF+PG+ VL G + F+ ++A SPLA ++F I G+ SV+FG DF Sbjct: 51 MFIQTQDTPNPNSLKFLPGRAVLDSGTMDFAGPRDAFCSPLARQLFRIDGVKSVFFGPDF 110 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K + +W+ ++P V IM+ F SG P+++ D D E D VV Sbjct: 111 ITITKTSGETEWKVIKPDVFATIMDFFTSGLPVVNEA---DAPRADTAPS---EDDDEVV 164 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++ G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 165 AMIKELLDTRIRPTVQEDGGDVLYHGFEDGIVKLKLQGSCTSCPSSIITLKNGIQNMLQF 224 Query: 179 FVPEVKDIRTV 189 +VPEV+ + V Sbjct: 225 YVPEVEGVEQV 235 >gi|195447128|ref|XP_002071076.1| GK25604 [Drosophila willistoni] gi|263505026|sp|B4NE93|NFU1_DROWI RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; Flags: Precursor gi|194167161|gb|EDW82062.1| GK25604 [Drosophila willistoni] Length = 289 Score = 174 bits (440), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 87/191 (45%), Positives = 121/191 (63%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G + F + A SPLA +F + G+ SV+FG D Sbjct: 68 MFIQTQDTPNPESLKFLPGVEVLGKGNTYDFPSVAAAHCSPLAKLLFRVEGVRSVFFGSD 127 Query: 60 FITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FIT+ K++ +W ++P V +IM+ F SG PI+H + + +E D V Sbjct: 128 FITISKEEAAEWGLIKPEVFAVIMDFFASGLPILHEA-------RNNADTEILEDDDETV 180 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF Y +G+V L M+G+CS CPS+ TLK GV N+L Sbjct: 181 MMIKELLDTRIRPTVQEDGGDIVFMSYDNGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 240 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 241 YIPEVESVEQV 251 >gi|170593029|ref|XP_001901267.1| r10h10-like protein TO42 [Brugia malayi] gi|158591334|gb|EDP29947.1| r10h10-like protein TO42, putative [Brugia malayi] Length = 220 Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 84/193 (43%), Positives = 127/193 (65%), Gaps = 8/193 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG--AIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 MFIQ ++TPNPATLKFIPG++++ +G + F N A+ SPLA +F I GI SV+FG Sbjct: 1 MFIQVQETPNPATLKFIPGKMIMGKGKGTLDFGNFMSAKKSPLAMELFRINGIKSVFFGE 60 Query: 59 DFITVGKDQY--DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 D++T+ K + DW L+P + ++M++ S PI++ + L + DS Sbjct: 61 DYVTITKQKEIDDWTLLKPEIFAVLMDYLQSEKPIVNESEM----LKGPEDTEIHPEDSD 116 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V IKE+L+ R++P V DGGD+++KG+ DG+V L M+G+C+GCPS+S TL+ G+ N+L Sbjct: 117 TVAMIKELLECRIKPMVQEDGGDVIYKGFLDGVVHLKMQGSCTGCPSSSVTLQSGIKNML 176 Query: 177 NHFVPEVKDIRTV 189 +VPEVKD+ V Sbjct: 177 QFYVPEVKDVMEV 189 >gi|238231487|ref|NP_001154157.1| HIRA-interacting protein 5 [Oncorhynchus mykiss] gi|225704456|gb|ACO08074.1| HIRA-interacting protein 5 [Oncorhynchus mykiss] Length = 250 Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 85/191 (44%), Positives = 123/191 (64%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKF+PG++VL +G + F+ +EA SPLA ++F I G+ V+ G DF Sbjct: 56 MFIQTQDTPNPNSLKFLPGRMVLEQGTMDFTAPREAYCSPLARQLFRIDGVKGVFLGPDF 115 Query: 61 ITVGKDQYD--WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K D W+ ++P V IM+ F SG P+++ D D D D V+ Sbjct: 116 ITITKTDVDLEWKLIKPDVFAAIMDFFTSGLPVVNEE---DTPRADTAPSD---DDDEVI 169 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++ G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 170 AMIKELLDTRIRPTVQEDGGDVLYCGFEDGIVKLKLQGSCTSCPSSMVTLKSGIQNMLQF 229 Query: 179 FVPEVKDIRTV 189 +VPEV+ + V Sbjct: 230 YVPEVEGVEQV 240 >gi|302381462|ref|YP_003817285.1| Scaffold protein Nfu/NifU [Brevundimonas subvibrioides ATCC 15264] gi|302192090|gb|ADK99661.1| Scaffold protein Nfu/NifU [Brevundimonas subvibrioides ATCC 15264] Length = 185 Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 85/193 (44%), Positives = 125/193 (64%), Gaps = 13/193 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP LKF+PG+ V G+ F + +A SPLA +F + ++ V+FG D Sbjct: 1 MFIQTEPTPNPNALKFLPGRDVAPGGSREFLSIDQATASPLAEALFQLEDVSGVFFGGDH 60 Query: 61 ITVGKDQY--DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 I+V + ++ DW ++P +L +IM+HF+SG P++ G + D E DS +V Sbjct: 61 ISVTRAEHGRDWSEMKPEILSVIMDHFVSGQPLMREGA---------DAVDHAEDDSEIV 111 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 IK +LD+R+RPAVA+DGGDI+F + + G++ L MRGAC+GCPS++ TLK GV ++ Sbjct: 112 AEIKSLLDSRIRPAVAQDGGDILFDAFDEESGVLRLRMRGACAGCPSSAMTLKAGVEQMM 171 Query: 177 NHFVPEVKDIRTV 189 H+VPEV + V Sbjct: 172 RHYVPEVTSVEQV 184 >gi|326497811|dbj|BAJ94768.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326521670|dbj|BAK00411.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 268 Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 90/189 (47%), Positives = 123/189 (65%), Gaps = 8/189 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +L F PG+ V+ G+ F NA+ A SPLA +F+I G+ V+FG DF Sbjct: 68 MFIQTQSTPNPQSLMFHPGKPVMDVGSSDFPNARTAMTSPLAKALFAIEGVTRVFFGSDF 127 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D+ W++L+P V IM+ + SG P+ + +D E DS +V Sbjct: 128 VTVTKSDETSWDYLKPEVFAAIMDFYSSGQPLFLDSNTA-AAMDTA----IHEDDSEIVA 182 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 183 MIKELLETRIRPAVQDDGGDIEYRGFEPETGIVKLKMQGACSGCPSSSVTLKSGIENMLM 242 Query: 178 HFVPEVKDI 186 H+VPEVK + Sbjct: 243 HYVPEVKGV 251 >gi|149727512|ref|XP_001491099.1| PREDICTED: similar to HIRA interacting protein 5 isoform 1 [Equus caballus] Length = 253 Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 88/192 (45%), Positives = 123/192 (64%), Gaps = 12/192 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 58 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 117 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDF-IESDSAV 117 ITV K+ + DW L+P + IM+ F SG P++ ++ SG+ E D V Sbjct: 118 ITVTKESEELDWNLLKPDIYATIMDFFASGLPLVT---------EETSSGEAGSEEDDEV 168 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 169 VAMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQ 228 Query: 178 HFVPEVKDIRTV 189 ++PEV+ + V Sbjct: 229 FYIPEVEGVEQV 240 >gi|71021777|ref|XP_761119.1| hypothetical protein UM04972.1 [Ustilago maydis 521] gi|46100569|gb|EAK85802.1| hypothetical protein UM04972.1 [Ustilago maydis 521] Length = 293 Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 86/195 (44%), Positives = 126/195 (64%), Gaps = 12/195 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPN +LKF+PG+ V+ G F + + + SPLA ++F+IPG+ SV++G DF Sbjct: 72 MFIQTESTPNEDSLKFLPGRQVMESGTHEFLDTRSSMASPLAKKLFNIPGVVSVFYGPDF 131 Query: 61 ITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD--FIESDSAV 117 +TV KD ++ W L+P + IME F SG P+ + GS D +++DS V Sbjct: 132 VTVSKDAEHQWSILKPEIYSSIMEFFTSGHPLFTDPESA------AGSQDTVILDTDSEV 185 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGY---RDGIVFLSMRGACSGCPSASETLKYGVAN 174 V IKE+LD RVRPA+ DGGD+ ++G+ DGIV + ++G+C GC S++ TLK G+ Sbjct: 186 VAMIKELLDTRVRPAIQEDGGDLEYRGFGEDTDGIVKVKLKGSCRGCDSSTVTLKSGIER 245 Query: 175 ILNHFVPEVKDIRTV 189 +L H++PEVK + V Sbjct: 246 MLMHYIPEVKGVEQV 260 >gi|157167461|ref|XP_001654807.1| hypothetical protein AaeL_AAEL002148 [Aedes aegypti] gi|108882432|gb|EAT46657.1| conserved hypothetical protein [Aedes aegypti] Length = 263 Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 86/192 (44%), Positives = 124/192 (64%), Gaps = 11/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G + F A SPLA +F I G+ SV+FG D Sbjct: 55 MFIQTQDTPNPDSLKFLPGVAVLEKGQTMDFPTQAAALCSPLAKLLFRIEGVRSVFFGAD 114 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGG-LGDMKLDDMGSGDFIESDSAV 117 F+T+ K ++ +W ++P V +IM+ F SG P++ + +GD +++ E D Sbjct: 115 FVTISKHEEAEWRLIKPEVFAVIMDFFASGLPVVTDAKPMGDTQIN--------EDDDET 166 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 VQ IKE+LD+++RP V DGGDI+F + DG+V L M+G+CS CPS+ TLK GV N+L Sbjct: 167 VQMIKELLDSKIRPTVQEDGGDIIFMAFEDGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQ 226 Query: 178 HFVPEVKDIRTV 189 ++PEV + V Sbjct: 227 FYIPEVVAVEQV 238 >gi|224110188|ref|XP_002315442.1| predicted protein [Populus trichocarpa] gi|222864482|gb|EEF01613.1| predicted protein [Populus trichocarpa] Length = 279 Score = 173 bits (439), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 91/190 (47%), Positives = 122/190 (64%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP++L F PG+ V+ G+ F NA+ A SPLA I+ I GI V+FG DF Sbjct: 78 MFIQTQSTPNPSSLMFYPGKPVMDVGSADFPNARSAMNSPLAKAIYGIDGINRVFFGPDF 137 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 IT+ K D WE L+P + IM+ + SG+P+ + K + E DS V Sbjct: 138 ITITKSDDATWEFLKPEIFAAIMDFYSSGEPLFLDSQTAAAKDTAIS-----EDDSETVA 192 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ + GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 193 MIKELLETRIRPAVQDDGGDIEYQGFDEETGIVKLKMQGACSGCPSSSVTLKSGIENMLM 252 Query: 178 HFVPEVKDIR 187 H+VPEVK + Sbjct: 253 HYVPEVKGVE 262 >gi|195132295|ref|XP_002010579.1| GI14603 [Drosophila mojavensis] gi|193909029|gb|EDW07896.1| GI14603 [Drosophila mojavensis] Length = 259 Score = 173 bits (439), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 87/191 (45%), Positives = 121/191 (63%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G + F + A SPLA +F + G+ +V+FG D Sbjct: 40 MFIQTQDTPNPDSLKFLPGVEVLGKGNTYDFPSGAAAHCSPLAKLLFRVEGVRAVFFGGD 99 Query: 60 FITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FIT+ K++ +W ++P V +IM+ F SG PI+H + +E D V Sbjct: 100 FITISKEESGEWGLIKPEVFAIIMDFFASGLPILHEARAN-------ADTEILEDDDETV 152 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF GY +G+V L M+G+CS CPS+ TLK GV N+L Sbjct: 153 MMIKELLDTRIRPTVQEDGGDIVFMGYENGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 212 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 213 YIPEVESVEQV 223 >gi|281346707|gb|EFB22291.1| hypothetical protein PANDA_002901 [Ailuropoda melanoleuca] Length = 186 Score = 173 bits (439), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 88/192 (45%), Positives = 123/192 (64%), Gaps = 12/192 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 4 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 63 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDF-IESDSAV 117 ITV K+ + DW L+P + IM+ F SG P++ ++ SG+ E D V Sbjct: 64 ITVTKESEELDWNLLKPDIYATIMDFFASGLPLVT---------EETSSGEAGSEEDDEV 114 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 115 VAMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQ 174 Query: 178 HFVPEVKDIRTV 189 ++PEV+ + V Sbjct: 175 FYIPEVEGVEQV 186 >gi|73970249|ref|XP_855433.1| PREDICTED: similar to HIRA interacting protein 5 isoform 2 [Canis familiaris] Length = 253 Score = 173 bits (439), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 88/192 (45%), Positives = 123/192 (64%), Gaps = 12/192 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 58 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 117 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDF-IESDSAV 117 ITV K+ + DW L+P + IM+ F SG P++ ++ SG+ E D V Sbjct: 118 ITVTKESEELDWNLLKPDIYATIMDFFASGLPLV---------TEETSSGEAGSEEDDEV 168 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 169 VAMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQ 228 Query: 178 HFVPEVKDIRTV 189 ++PEV+ + V Sbjct: 229 FYIPEVEGVEQV 240 >gi|195059008|ref|XP_001995543.1| GH17809 [Drosophila grimshawi] gi|263505270|sp|B4JWR9|NFU1_DROGR RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; Flags: Precursor gi|193896329|gb|EDV95195.1| GH17809 [Drosophila grimshawi] Length = 298 Score = 173 bits (439), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 87/191 (45%), Positives = 120/191 (62%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G + F +A A SPLA +F + G+ +V+FG D Sbjct: 79 MFIQTQDTPNPDSLKFLPGVEVLGKGNTYDFPSATAAHCSPLAKLLFRVEGVRAVFFGSD 138 Query: 60 FITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FIT+ K++ +W ++P V +IM+ F SG PI+H + +E D V Sbjct: 139 FITISKEENGEWGLIKPEVFAVIMDFFASGLPILHEARPN-------ADTEILEDDDETV 191 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF Y G+V L M+G+CS CPS+ TLK GV N+L Sbjct: 192 MMIKELLDTRIRPTVQEDGGDIVFISYEKGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 251 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 252 YIPEVESVEQV 262 >gi|312070286|ref|XP_003138076.1| hypothetical protein LOAG_02490 [Loa loa] gi|307766755|gb|EFO25989.1| hypothetical protein LOAG_02490 [Loa loa] Length = 220 Score = 173 bits (439), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 85/193 (44%), Positives = 126/193 (65%), Gaps = 8/193 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG--AIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 MFIQ +TPNPATLKFIPG++++ +G + F N A+ SPLA +F I G+ SV+FG Sbjct: 1 MFIQVHETPNPATLKFIPGRMIMGKGRGTLDFGNFLSAKRSPLAMELFRINGVKSVFFGE 60 Query: 59 DFITVGKDQY--DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 D++T+ K DW L+P + ++M++ S PII G + D + DS Sbjct: 61 DYVTITKQNEVDDWALLKPEIFAVLMDYLQSEKPIISEGEMPKGPED----TEIHPEDSD 116 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V IKE+L+ R++P V DGGD+++KG+ DG+V L M+G+C+GCPS+S TL++G+ N+L Sbjct: 117 TVAMIKELLECRIKPMVQEDGGDVIYKGFHDGVVHLKMQGSCTGCPSSSVTLQFGIKNML 176 Query: 177 NHFVPEVKDIRTV 189 +VPEVKD+ V Sbjct: 177 QFYVPEVKDVLEV 189 >gi|66543732|ref|XP_395826.2| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like [Apis mellifera] Length = 275 Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 87/187 (46%), Positives = 122/187 (65%), Gaps = 12/187 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG +L +G F NA + SPLA +F I G+ SV+FG D Sbjct: 64 MFIQTQDTPNPNSLKFLPGVKILEQGQTKDFPNAIDGYCSPLAKMLFRIDGVKSVFFGPD 123 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGG-LGDMKLDDMGSGDFIESDSA 116 FIT+ K + +W+ L+P + +IM+ F SG P++ + D ++ D DS Sbjct: 124 FITITKADEDVEWKLLKPEIFAVIMDFFASGLPVLTDEQPAADTQISD--------DDSE 175 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +VQ IKE+LD R+RP V DGGDIVF G+ +GIV L M+G+C+ CPS+ TLK GV N++ Sbjct: 176 IVQMIKELLDTRIRPTVQEDGGDIVFMGFEEGIVKLKMQGSCTSCPSSVITLKNGVQNMM 235 Query: 177 NHFVPEV 183 ++PEV Sbjct: 236 QFYIPEV 242 >gi|195482335|ref|XP_002102005.1| GE15286 [Drosophila yakuba] gi|263505516|sp|B4PZ52|NFU1_DROYA RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; Flags: Precursor gi|194189529|gb|EDX03113.1| GE15286 [Drosophila yakuba] Length = 283 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 86/191 (45%), Positives = 119/191 (62%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G + F N A SPLA +F + G+ V+FG D Sbjct: 67 MFIQTQDTPNPDSLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGAD 126 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+T+ K + +W ++P V +IM+ F SG P++H+ + +E D V Sbjct: 127 FVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLHDA-------QPNADTEILEDDDETV 179 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF GY G+V L M+G+CS CPS+ TLK GV N+L Sbjct: 180 MMIKELLDTRIRPTVQEDGGDIVFMGYEAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 240 YIPEVESVEQV 250 >gi|254295433|ref|YP_003061456.1| Scaffold protein Nfu/NifU [Hirschia baltica ATCC 49814] gi|254043964|gb|ACT60759.1| Scaffold protein Nfu/NifU [Hirschia baltica ATCC 49814] Length = 190 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 87/190 (45%), Positives = 125/190 (65%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP TLKF+PG+ V + F N KEA SPLA+ +F++ G+ +V+ G DF Sbjct: 1 MFIQTEATPNPETLKFLPGREVSPKTPYEFLNEKEAGSSPLAAFLFTLKGVKTVFLGADF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 + + K Q DW L+P L IM+HF+SG P++ + + + G+ ++ +V Sbjct: 61 VALTKTQETDWAILKPQALAAIMDHFVSGMPVMADYSDPAPVEEVIYEGE----NAEIVA 116 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+++ RVRPAVA DGGDI+F+ + G+V L MRGAC+GCPS++ TLK G+ N+L Sbjct: 117 EIKELIETRVRPAVANDGGDIIFEKFDVDTGVVTLQMRGACAGCPSSTMTLKSGIENMLR 176 Query: 178 HFVPEVKDIR 187 H+VPEV + Sbjct: 177 HYVPEVTAVE 186 >gi|111035797|emb|CAL29424.1| NifU-related protein [Wolbachia endosymbiont of Onchocerca volvulus] Length = 194 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 86/192 (44%), Positives = 132/192 (68%), Gaps = 6/192 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ ++TPN TLKF+PG ++L EG + FS+A E + S LA+ +F I + V+FG+D Sbjct: 5 MFIQIKETPNLNTLKFLPGFMILNEGETVDFSSANETKNSKLAANLFRIEHVIRVFFGHD 64 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE-SDSAV 117 FI+V K D +W L+ VL IM+HF S + G D +D+ +F + SD+ + Sbjct: 65 FISVTKSDDINWNTLKVEVLTTIMDHFASSGKALDREGTND---NDILEEEFFDKSDTEI 121 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V RI+E++++ ++PAV +DGGDI F+GY++GIV++ ++GACSGCPSA+ TLK G+ N+L Sbjct: 122 VSRIRELMESYIKPAVVQDGGDIKFRGYKNGIVYVELQGACSGCPSATITLKQGIQNMLC 181 Query: 178 HFVPEVKDIRTV 189 + +PE+ I T+ Sbjct: 182 YHIPEILGIDTI 193 >gi|332813521|ref|XP_003309120.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial [Pan troglodytes] gi|5738608|emb|CAB53015.1| HIRA-interacting protein HIRIP5 [Homo sapiens] gi|62822279|gb|AAY14828.1| unknown [Homo sapiens] gi|189054196|dbj|BAG36716.1| unnamed protein product [Homo sapiens] Length = 196 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 88/191 (46%), Positives = 122/191 (63%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 1 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 60 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ + + GS E D VV Sbjct: 61 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTE----ETPSGEAGS----EEDDEVV 112 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 113 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 172 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 173 YIPEVEGVEQV 183 >gi|326932642|ref|XP_003212423.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like [Meleagris gallopavo] Length = 233 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 86/189 (45%), Positives = 121/189 (64%), Gaps = 9/189 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + FS+ A SPLA ++F I G+ S++FG DF Sbjct: 36 MFIQTQDTPNPNSLKFIPGKEVLDSRTMEFSSPAAAFCSPLARQLFRIEGVKSIFFGPDF 95 Query: 61 ITVGKDQ--YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K+ DW L+P + IM+ F SG P++ + D S E D VV Sbjct: 96 ITITKESEDLDWNLLKPDIYATIMDFFASGLPVLTEEA---PRTDTAQS----EEDDEVV 148 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 149 LMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 208 Query: 179 FVPEVKDIR 187 ++PEV+ + Sbjct: 209 YIPEVEGVE 217 >gi|114577877|ref|XP_001137587.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 7 [Pan troglodytes] Length = 230 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 88/192 (45%), Positives = 123/192 (64%), Gaps = 12/192 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 35 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 94 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDF-IESDSAV 117 ITV K+ + DW L+P + IM+ F SG P++ ++ SG+ E D V Sbjct: 95 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVT---------EETPSGEAGSEEDDEV 145 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 146 VAMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQ 205 Query: 178 HFVPEVKDIRTV 189 ++PEV+ + V Sbjct: 206 FYIPEVEGVEQV 217 >gi|50593025|ref|NP_056515.2| NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 1 [Homo sapiens] gi|32967071|gb|AAP92373.1| cytosolic iron-sulfur cluster scaffold protein Nfu [Homo sapiens] gi|119620256|gb|EAW99850.1| HIRA interacting protein 5, isoform CRA_b [Homo sapiens] Length = 230 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 88/192 (45%), Positives = 123/192 (64%), Gaps = 12/192 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 35 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 94 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDF-IESDSAV 117 ITV K+ + DW L+P + IM+ F SG P++ ++ SG+ E D V Sbjct: 95 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVT---------EETPSGEAGSEEDDEV 145 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 146 VAMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQ 205 Query: 178 HFVPEVKDIRTV 189 ++PEV+ + V Sbjct: 206 FYIPEVEGVEQV 217 >gi|241761631|ref|ZP_04759718.1| Scaffold protein Nfu/NifU [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753996|ref|YP_003226889.1| Scaffold protein Nfu/NifU [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|241373939|gb|EER63472.1| Scaffold protein Nfu/NifU [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258553359|gb|ACV76305.1| Scaffold protein Nfu/NifU [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 183 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 88/191 (46%), Positives = 127/191 (66%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M I+TE TPNPATLKF+ + V+ + +F N +EA SPLA +F + + +V++G DF Sbjct: 1 MLIETEKTPNPATLKFLLHRPVMERESRYFVNKEEAADSPLAVALFDLQHVTAVFYGRDF 60 Query: 61 ITVGKDQYD-WEHLRPPVLGMIMEHFISGDPI-IHNGGLGDMKLDDMGSGDFIESDSAVV 118 I+V D W +L ++ +I +HF + P+ + N + K D E D ++ Sbjct: 61 ISVTLDSPSLWSNLESKIIMIISDHFDNDIPLLVENSEKNETK-------DHDEEDDVIL 113 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 Q IK+++D+RVRPAVARDGGDIVF+ + DGIV+LSMRGAC+GCPS+ TLK GV +L H Sbjct: 114 Q-IKDLIDSRVRPAVARDGGDIVFQKFEDGIVYLSMRGACAGCPSSVATLKQGVETLLKH 172 Query: 179 FVPEVKDIRTV 189 FVPE+K++R + Sbjct: 173 FVPEIKEVRAI 183 >gi|254420655|ref|ZP_05034379.1| Scaffold protein Nfu/NifU N terminal [Brevundimonas sp. BAL3] gi|196186832|gb|EDX81808.1| Scaffold protein Nfu/NifU N terminal [Brevundimonas sp. BAL3] Length = 185 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 84/190 (44%), Positives = 121/190 (63%), Gaps = 13/190 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP LKF+PG+ V + + A SPLA +F + G+ V+FG D+ Sbjct: 1 MFIQTEPTPNPNVLKFLPGREVSPLAVLDYRTIDAATASPLAEALFELEGVDGVFFGADY 60 Query: 61 ITVGKDQY--DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ++V + + DW ++ P+LG+IM+HF+SG P+ G + +D DS +V Sbjct: 61 VSVTRQERGPDWSEMKAPILGVIMDHFVSGRPLTVAGSETETHAED---------DSEIV 111 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 IK +LD+R+RPAVA+DGGDI+F + + G++ L MRGACSGCPS+S TLK GV ++ Sbjct: 112 AEIKALLDSRIRPAVAQDGGDILFDAFDEATGVLSLRMRGACSGCPSSSATLKAGVEQMM 171 Query: 177 NHFVPEVKDI 186 H+VPEV + Sbjct: 172 RHYVPEVTRV 181 >gi|194897711|ref|XP_001978709.1| GG17526 [Drosophila erecta] gi|263504966|sp|B3NYF7|NFU1_DROER RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; Flags: Precursor gi|190650358|gb|EDV47636.1| GG17526 [Drosophila erecta] Length = 283 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 86/191 (45%), Positives = 119/191 (62%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G + F N A SPLA +F + G+ V+FG D Sbjct: 67 MFIQTQDTPNPDSLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGAD 126 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+T+ K + +W ++P V +IM+ F SG P++H+ + +E D V Sbjct: 127 FVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLHDA-------QPNADTEILEDDDETV 179 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF GY G+V L M+G+CS CPS+ TLK GV N+L Sbjct: 180 MMIKELLDTRIRPTVQEDGGDIVFMGYEAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 240 YIPEVESVEQV 250 >gi|55596270|ref|XP_525775.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 8 [Pan troglodytes] gi|332813518|ref|XP_001137508.2| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 6 [Pan troglodytes] Length = 254 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 88/192 (45%), Positives = 123/192 (64%), Gaps = 12/192 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 59 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 118 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDF-IESDSAV 117 ITV K+ + DW L+P + IM+ F SG P++ ++ SG+ E D V Sbjct: 119 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVT---------EETPSGEAGSEEDDEV 169 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 170 VAMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQ 229 Query: 178 HFVPEVKDIRTV 189 ++PEV+ + V Sbjct: 230 FYIPEVEGVEQV 241 >gi|242086973|ref|XP_002439319.1| hypothetical protein SORBIDRAFT_09g004310 [Sorghum bicolor] gi|241944604|gb|EES17749.1| hypothetical protein SORBIDRAFT_09g004310 [Sorghum bicolor] Length = 268 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 88/189 (46%), Positives = 124/189 (65%), Gaps = 8/189 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +L F PG+ V+ G+ F NA+ A SPLA +F+I G+ ++FG DF Sbjct: 71 MFIQTQSTPNPQSLMFYPGKPVMEVGSSDFPNARTAMTSPLAKALFAIDGVTRIFFGSDF 130 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K ++ W++L+P V IM+ + SG P+ + +D E DS +V Sbjct: 131 VTVTKSEETSWDYLKPEVFAAIMDFYSSGQPLFLDSNAA-ASMDTA----IHEDDSEIVA 185 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ +GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 186 MIKELLETRIRPAVQDDGGDIEYRGFDPENGIVKLKMQGACSGCPSSSVTLKSGIENMLM 245 Query: 178 HFVPEVKDI 186 H+VPEVK + Sbjct: 246 HYVPEVKGV 254 >gi|301758232|ref|XP_002914967.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like [Ailuropoda melanoleuca] Length = 420 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 88/192 (45%), Positives = 123/192 (64%), Gaps = 12/192 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 225 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 284 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDF-IESDSAV 117 ITV K+ + DW L+P + IM+ F SG P++ ++ SG+ E D V Sbjct: 285 ITVTKESEELDWNLLKPDIYATIMDFFASGLPLV---------TEETSSGEAGSEEDDEV 335 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 336 VAMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQ 395 Query: 178 HFVPEVKDIRTV 189 ++PEV+ + V Sbjct: 396 FYIPEVEGVEQV 407 >gi|47212055|emb|CAF90173.1| unnamed protein product [Tetraodon nigroviridis] Length = 196 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 80/191 (41%), Positives = 123/191 (64%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MF+QT+DTPNP +LKF+PG VL G ++F + ++A SPLA ++F + G+ SV G DF Sbjct: 1 MFVQTQDTPNPNSLKFLPGCTVLETGTMNFDSPRDAHCSPLARQLFRVDGVKSVLLGPDF 60 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K DW+ ++P V IM+ F SG P++ G +++D D D +V Sbjct: 61 ITISKIDANIDWKVIKPDVFATIMDFFTSGLPVVSEGS---KQIEDTAPSD---DDDELV 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++++G+ G+V L ++G+C+ CPS+ TLK G+ N+L Sbjct: 115 AMIKELLDTRIRPTVQEDGGDVLYRGFEGGVVKLKLQGSCTSCPSSIITLKSGIQNMLQF 174 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 175 YIPEVESVEQV 185 >gi|34500319|gb|AAQ73784.1| NifU-like protein HIRIP5 [Homo sapiens] gi|194374137|dbj|BAG62381.1| unnamed protein product [Homo sapiens] Length = 254 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 88/192 (45%), Positives = 123/192 (64%), Gaps = 12/192 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 59 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 118 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDF-IESDSAV 117 ITV K+ + DW L+P + IM+ F SG P++ ++ SG+ E D V Sbjct: 119 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLV---------TEETPSGEAGSEEDDEV 169 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 170 VAMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQ 229 Query: 178 HFVPEVKDIRTV 189 ++PEV+ + V Sbjct: 230 FYIPEVEGVEQV 241 >gi|114577887|ref|XP_001137189.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] Length = 248 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 88/191 (46%), Positives = 122/191 (63%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 59 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 118 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ + + GS E D VV Sbjct: 119 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTE----ETPSGEAGS----EEDDEVV 170 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 171 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 230 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 231 YIPEVEGVEQV 241 >gi|50593021|ref|NP_001002755.1| NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 2 [Homo sapiens] gi|205371805|sp|Q9UMS0|NFU1_HUMAN RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; AltName: Full=HIRA-interacting protein 5; Flags: Precursor gi|32967069|gb|AAP92372.1| iron-sulfur cluster scaffold protein Nfu [Homo sapiens] gi|109731123|gb|AAI13693.1| NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) [Homo sapiens] gi|109731125|gb|AAI13695.1| NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) [Homo sapiens] gi|119620255|gb|EAW99849.1| HIRA interacting protein 5, isoform CRA_a [Homo sapiens] gi|261860742|dbj|BAI46893.1| NFU1 iron-sulfur cluster scaffold homolog [synthetic construct] gi|313884030|gb|ADR83501.1| NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) [synthetic construct] Length = 254 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 88/192 (45%), Positives = 123/192 (64%), Gaps = 12/192 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 59 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 118 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDF-IESDSAV 117 ITV K+ + DW L+P + IM+ F SG P++ ++ SG+ E D V Sbjct: 119 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLV---------TEETPSGEAGSEEDDEV 169 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 170 VAMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQ 229 Query: 178 HFVPEVKDIRTV 189 ++PEV+ + V Sbjct: 230 FYIPEVEGVEQV 241 >gi|114053059|ref|NP_001040031.1| NFU1 iron-sulfur cluster scaffold homolog, mitochondrial [Bos taurus] gi|86823819|gb|AAI05370.1| NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) [Bos taurus] gi|296482427|gb|DAA24542.1| HIRA interacting protein 5 [Bos taurus] Length = 253 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 88/191 (46%), Positives = 122/191 (63%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 58 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPATAFRSPLARQLFRIEGVKSVFFGPDF 117 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ + + GS E D VV Sbjct: 118 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTE----ETPSGEAGS----EDDDEVV 169 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 170 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 229 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 230 YIPEVEGVEQV 240 >gi|332226734|ref|XP_003262547.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like isoform 3 [Nomascus leucogenys] Length = 230 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 87/192 (45%), Positives = 123/192 (64%), Gaps = 12/192 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 35 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 94 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDF-IESDSAV 117 IT+ K+ + DW L+P + IM+ F SG P++ ++ SG+ E D V Sbjct: 95 ITITKENEELDWNLLKPDIYATIMDFFASGLPLVT---------EETPSGEAGSEEDDEV 145 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 146 VAMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQ 205 Query: 178 HFVPEVKDIRTV 189 ++PEV+ + V Sbjct: 206 FYIPEVEGVEQV 217 >gi|126304005|ref|XP_001381686.1| PREDICTED: similar to iron-sulfur cluster scaffold protein Nfu [Monodelphis domestica] Length = 235 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 87/191 (45%), Positives = 118/191 (61%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+ G DF Sbjct: 40 MFIQTQDTPNPNSLKFIPGKSVLGSQTMDFPTPATAFRSPLARQLFRIEGVKSVFLGPDF 99 Query: 61 ITVGKDQ--YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ DW L+P + IM+ F SG PI+ + S E D VV Sbjct: 100 ITVTKESEDLDWNLLKPDIYATIMDFFASGLPILTE--------ETPSSETATEEDDEVV 151 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 152 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 211 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 212 YIPEVEGVEQV 222 >gi|31874276|emb|CAD98142.1| hypothetical protein [Homo sapiens] Length = 242 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 88/191 (46%), Positives = 122/191 (63%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 59 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 118 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ + + GS E D VV Sbjct: 119 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTE----ETPSGEAGS----EEDDEVV 170 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 171 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 230 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 231 YIPEVEGVEQV 241 >gi|17541876|ref|NP_501917.1| LiPid Depleted family member (lpd-8) [Caenorhabditis elegans] gi|3879150|emb|CAA94609.1| C. elegans protein R10H10.1, confirmed by transcript evidence [Caenorhabditis elegans] Length = 222 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 82/190 (43%), Positives = 120/190 (63%), Gaps = 13/190 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA--IHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 M+IQ ++TPNP +LKF+PGQ +L + + FS+A A+ SPLA ++ + G+ V+FG Sbjct: 16 MYIQVQETPNPLSLKFLPGQQLLPDASKTYDFSSAATAKQSPLAIKLLRVDGVKRVFFGE 75 Query: 59 DFITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 DF+TV K + DW LRP + I +H +G P+I+ D +E D Sbjct: 76 DFVTVTKSDETVDWALLRPEIFSTIADHIQTGKPVINEAA---------TVSDQVEEDDE 126 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 VV IKE+L+ R+RP V DGGDI + G+ DG+V L M+G+C+GCPS+ TLK G+ N+L Sbjct: 127 VVMMIKEILETRIRPMVQEDGGDITYVGFDDGVVKLKMQGSCTGCPSSGVTLKNGIENML 186 Query: 177 NHFVPEVKDI 186 +VPEVK++ Sbjct: 187 TFYVPEVKEV 196 >gi|332226730|ref|XP_003262545.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like isoform 1 [Nomascus leucogenys] gi|332226732|ref|XP_003262546.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like isoform 2 [Nomascus leucogenys] Length = 254 Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 87/192 (45%), Positives = 123/192 (64%), Gaps = 12/192 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 59 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 118 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDF-IESDSAV 117 IT+ K+ + DW L+P + IM+ F SG P++ ++ SG+ E D V Sbjct: 119 ITITKENEELDWNLLKPDIYATIMDFFASGLPLVT---------EETPSGEAGSEEDDEV 169 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 170 VAMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQ 229 Query: 178 HFVPEVKDIRTV 189 ++PEV+ + V Sbjct: 230 FYIPEVEGVEQV 241 >gi|283856470|ref|YP_163150.2| scaffold protein Nfu/NifU [Zymomonas mobilis subsp. mobilis ZM4] gi|283775474|gb|AAV90039.2| Scaffold protein Nfu/NifU [Zymomonas mobilis subsp. mobilis ZM4] Length = 183 Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 88/191 (46%), Positives = 128/191 (67%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M I+TE TPNPATLKF+ + V+ + +F N +EA SPLA +F + + +V++G DF Sbjct: 1 MLIETEKTPNPATLKFLLHRPVMERESRYFVNKEEAADSPLAVALFDLQHVTAVFYGRDF 60 Query: 61 ITVGKDQYD-WEHLRPPVLGMIMEHFISGDPI-IHNGGLGDMKLDDMGSGDFIESDSAVV 118 I+V D W +L ++ +I +HF + P+ + N ++K D E D ++ Sbjct: 61 ISVTLDSPSLWSNLESKIIMIISDHFDNDIPLLVENFEKNEIK-------DHDEEDDVIL 113 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 Q IK+++D+RVRPAVARDGGDIVF+ + DGIV+LSMRGAC+GCPS+ TLK GV +L H Sbjct: 114 Q-IKDLIDSRVRPAVARDGGDIVFQKFEDGIVYLSMRGACAGCPSSVATLKQGVETLLKH 172 Query: 179 FVPEVKDIRTV 189 FVPE+K++R + Sbjct: 173 FVPEIKEVRAI 183 >gi|158288625|ref|XP_310479.4| AGAP000598-PA [Anopheles gambiae str. PEST] gi|157018658|gb|EAA06366.4| AGAP000598-PA [Anopheles gambiae str. PEST] Length = 226 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 85/191 (44%), Positives = 120/191 (62%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G + F + A+ SPLA +F + G+ +V+FG D Sbjct: 11 MFIQTQDTPNPDSLKFLPGVPVLEKGQTMDFPSVSAAQCSPLAKLLFRVEGVRAVFFGGD 70 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+T+ K + +W ++P V +IM+ F SG P++ + F E D V Sbjct: 71 FVTISKQEDAEWRIIKPEVFAVIMDFFASGLPVVTDAKPN-------PDTQFNEDDDETV 123 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 Q IKE+LD R+RP V DGGDI+F G+ DG+V L M+G+CS CPS+ TLK GV N+L Sbjct: 124 QMIKELLDTRIRPTVQEDGGDIIFMGFDDGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 183 Query: 179 FVPEVKDIRTV 189 ++PEV + V Sbjct: 184 YIPEVVSVEQV 194 >gi|322798976|gb|EFZ20436.1| hypothetical protein SINV_01605 [Solenopsis invicta] Length = 226 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 87/188 (46%), Positives = 121/188 (64%), Gaps = 13/188 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKFIPG VL EG F +AK+A SPLA +F I G+ +++FG D Sbjct: 15 MFIQTQDTPNPNSLKFIPGVSVLGEGCTKDFPSAKDAYCSPLAKMLFRIEGVKAIFFGPD 74 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGG--LGDMKLDDMGSGDFIESDS 115 FITV K + +W+ L+P V IM+ F +G P++ D +++ D Sbjct: 75 FITVTKIDEDVEWKLLKPEVFATIMDFFATGLPVMDETSQPAADTQIN--------AEDD 126 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 +VQ IKE+LD R+RP V DGGDIVF G+ +GIV L M+G+C+ CPS+ TL+ GV N+ Sbjct: 127 EIVQMIKELLDTRIRPTVQEDGGDIVFVGFEEGIVKLKMQGSCTNCPSSVVTLRNGVQNM 186 Query: 176 LNHFVPEV 183 + ++PEV Sbjct: 187 MQFYIPEV 194 >gi|324510498|gb|ADY44390.1| NFU1 iron-sulfur cluster scaffold [Ascaris suum] Length = 213 Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 85/193 (44%), Positives = 127/193 (65%), Gaps = 8/193 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLV--EGAIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 MFIQ ++TPNP TLKF+PG+ VL G + F++ A+ SPLA ++F + G+ S++FG Sbjct: 1 MFIQVQETPNPLTLKFLPGEPVLGPGRGTMDFTSVSAAKRSPLALQLFRVDGVKSIFFGE 60 Query: 59 DFITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 DFITV K ++ DW ++P + IM+ +G I+++G + D +D M D Sbjct: 61 DFITVTKADEETDWAVMKPEIFATIMDFLQTGKAIVNDGEVPDGPMDTM----IHPEDDD 116 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V IKE+L++RV+P V DGGDI++KG+ DGIV L ++G+C+GCPS+ TLK G+ N+L Sbjct: 117 TVAMIKELLESRVKPMVQEDGGDIIYKGFHDGIVHLKLKGSCTGCPSSLVTLKSGIKNML 176 Query: 177 NHFVPEVKDIRTV 189 +VPEV D+ V Sbjct: 177 QFYVPEVVDVIEV 189 >gi|26324295|dbj|BAC24985.1| unnamed protein product [Mus musculus] Length = 200 Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 86/191 (45%), Positives = 120/191 (62%), Gaps = 7/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 1 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 60 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ + G E D VV Sbjct: 61 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVT-----EETPPPPGEAGSSEEDDEVV 115 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++++G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 116 AMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF 175 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 176 YIPEVEGVEQV 186 >gi|307215410|gb|EFN90079.1| NFU1 iron-sulfur cluster scaffold-like protein, mitochondrial [Harpegnathos saltator] Length = 265 Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 91/186 (48%), Positives = 119/186 (63%), Gaps = 13/186 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKFIPG VL EG F NAK+A SPLA +F I G+ +++FG D Sbjct: 56 MFIQTQDTPNPNSLKFIPGVSVLGEGCTKDFPNAKDAYCSPLAKMLFRIEGVKAIFFGPD 115 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 FITV K + +W+ L+P + IM+ F SG PI+ L D S D D V Sbjct: 116 FITVTKLDEDIEWKLLKPEIFATIMDFFASGLPIMDESQLA---ADTQISTD----DDEV 168 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 VQ IKE+LD R+RP V DGGDI G+ +GIV L M+G+C+ CPS+ TL+ GV N++ Sbjct: 169 VQMIKELLDTRIRPTVQEDGGDI---GFEEGIVKLKMQGSCTNCPSSVVTLRNGVQNMMQ 225 Query: 178 HFVPEV 183 ++PEV Sbjct: 226 FYIPEV 231 >gi|195357024|ref|XP_002044916.1| GM13534 [Drosophila sechellia] gi|263505008|sp|B4IMF6|NFU1_DROSE RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; Flags: Precursor gi|194124051|gb|EDW46094.1| GM13534 [Drosophila sechellia] Length = 283 Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 86/191 (45%), Positives = 119/191 (62%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G + F N A SPLA +F + G+ V+FG D Sbjct: 67 MFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGAD 126 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FIT+ K + +W ++P V +IM+ F SG P++++ + +E D V Sbjct: 127 FITISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDA-------QPNADTEILEDDDETV 179 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF GY G+V L M+G+CS CPS+ TLK GV N+L Sbjct: 180 MMIKELLDTRIRPTVQEDGGDIVFMGYEAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 240 YIPEVESVEQV 250 >gi|282154799|ref|NP_001100076.2| NFU1 iron-sulfur cluster scaffold homolog precursor [Rattus norvegicus] gi|149036647|gb|EDL91265.1| histone cell cycle regulation defective interacting protein 5 (predicted), isoform CRA_a [Rattus norvegicus] Length = 253 Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 87/191 (45%), Positives = 122/191 (63%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 57 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 116 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ + + GS E D VV Sbjct: 117 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTE----ETPPGEAGS----EEDDEVV 168 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++++G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 169 AMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF 228 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 229 YIPEVEGVEQV 239 >gi|114577889|ref|XP_001137105.1| PREDICTED: similar to HIRA interacting protein 5 isoform 1 [Pan troglodytes] Length = 240 Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 87/189 (46%), Positives = 121/189 (64%), Gaps = 10/189 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 59 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 118 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ + + GS E D VV Sbjct: 119 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTE----ETPSGEAGS----EEDDEVV 170 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 171 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 230 Query: 179 FVPEVKDIR 187 ++PEV+ + Sbjct: 231 YIPEVEGVE 239 >gi|325087305|gb|ADY77002.1| iron-sulfur cluster assembly protein NFU4 [Ipomoea batatas] gi|325087311|gb|ADY77005.1| iron-sulfur cluster assembly protein NFU4 [Ipomoea batatas] Length = 281 Score = 171 bits (432), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 90/189 (47%), Positives = 119/189 (62%), Gaps = 8/189 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +L F PG+ V+ G+ F NA+ A SPLA +F I GI V++G DF Sbjct: 80 MFIQTQSTPNPLSLMFYPGKPVMETGSADFPNARSAMNSPLAKALFGIDGITRVFYGSDF 139 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D W+ L+P + IM+ F SG P+ + +D E DS V Sbjct: 140 VTVTKSDDASWDLLKPEIFAAIMDFFSSGKPLFLDSNTA-ASMDTA----IQEDDSETVA 194 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 195 MIKELLETRIRPAVQDDGGDIEYRGFDADSGIVKLRMQGACSGCPSSSVTLKSGIENMLM 254 Query: 178 HFVPEVKDI 186 H+VPEVK + Sbjct: 255 HYVPEVKGV 263 >gi|196003412|ref|XP_002111573.1| hypothetical protein TRIADDRAFT_55734 [Trichoplax adhaerens] gi|190585472|gb|EDV25540.1| hypothetical protein TRIADDRAFT_55734 [Trichoplax adhaerens] Length = 236 Score = 170 bits (431), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 83/191 (43%), Positives = 121/191 (63%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT DTPNP +LKF+PG VL G I +S+A++A SPLA +F + G+ SV+ G DF Sbjct: 36 MFIQTLDTPNPNSLKFVPGVPVLGSGTIDYSSARDALTSPLAKNLFRVDGVKSVFLGPDF 95 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +T+ + D +W L+P + +IM+ F SG P++ + + DS V Sbjct: 96 VTISRADDDIEWNTLKPDIYAVIMDFFASGAPVL-------IDYEPATDTAVQPEDSDTV 148 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+L+ R+RP + DGGDIV+ GY +GIV L M+GAC CPSA+ TLK+G+ N+L Sbjct: 149 AMIKELLETRIRPTLQEDGGDIVYMGYDNGIVKLKMQGACDSCPSATVTLKHGIQNMLQF 208 Query: 179 FVPEVKDIRTV 189 ++PEV+ + + Sbjct: 209 YIPEVEGVEQI 219 >gi|148666782|gb|EDK99198.1| mCG130855, isoform CRA_b [Mus musculus] Length = 256 Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 86/191 (45%), Positives = 120/191 (62%), Gaps = 7/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 57 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 116 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ + G E D VV Sbjct: 117 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLV-----TEETPPPPGEAGSSEEDDEVV 171 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++++G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 172 AMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF 231 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 232 YIPEVEGVEQV 242 >gi|282154803|ref|NP_001164062.1| NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 1 precursor [Mus musculus] gi|74211556|dbj|BAE26508.1| unnamed protein product [Mus musculus] Length = 256 Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 86/191 (45%), Positives = 120/191 (62%), Gaps = 7/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 57 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 116 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ + G E D VV Sbjct: 117 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLV-----TEETPPPPGEAGSSEEDDEVV 171 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++++G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 172 AMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF 231 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 232 YIPEVEGVEQV 242 >gi|6760408|gb|AAF28338.1|AF213379_1 r10h10-like protein TO42 [Drosophila melanogaster] gi|6554171|gb|AAF16622.1| TO42 [Drosophila melanogaster] Length = 286 Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 85/191 (44%), Positives = 119/191 (62%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G + F N A SPLA +F + G+ V+FG D Sbjct: 70 MFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHNSPLAKLLFRVEGVKGVFFGAD 129 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+T+ K + +W ++P V +IM+ F SG P++++ + +E D V Sbjct: 130 FVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDA-------QPNADTEILEDDDETV 182 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF GY G+V L M+G+CS CPS+ TLK GV N+L Sbjct: 183 MMIKELLDTRIRPTVQEDGGDIVFMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 242 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 243 YIPEVESVEQV 253 >gi|115462181|ref|NP_001054690.1| Os05g0155300 [Oryza sativa Japonica Group] gi|54291852|gb|AAV32220.1| unknown protein [Oryza sativa Japonica Group] gi|113578241|dbj|BAF16604.1| Os05g0155300 [Oryza sativa Japonica Group] gi|215697325|dbj|BAG91319.1| unnamed protein product [Oryza sativa Japonica Group] gi|222630253|gb|EEE62385.1| hypothetical protein OsJ_17174 [Oryza sativa Japonica Group] Length = 272 Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 88/189 (46%), Positives = 123/189 (65%), Gaps = 8/189 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +L F PG+ V+ G+ F NA+ A SPLA +F+I G+ V+FG DF Sbjct: 72 MFIQTQSTPNPQSLMFYPGKPVMEVGSSDFPNARTAMTSPLAKALFAIDGVTRVFFGSDF 131 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K ++ W++L+P V +IM+ + SG + + +D E DS +V Sbjct: 132 VTVTKSEETSWDYLKPEVFAVIMDFYSSGQSLFLDSSTA-ASMDTA----IHEDDSEIVA 186 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 187 MIKELLETRIRPAVQDDGGDIEYRGFDPETGIVKLKMQGACSGCPSSSVTLKSGIENMLM 246 Query: 178 HFVPEVKDI 186 H+VPEVK + Sbjct: 247 HYVPEVKGV 255 >gi|296087967|emb|CBI35250.3| unnamed protein product [Vitis vinifera] Length = 202 Score = 170 bits (430), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 89/190 (46%), Positives = 120/190 (63%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNPA+L F PG+ V+ G+ F N++ A SPLA ++ I GI V+FG DF Sbjct: 1 MFIQTQSTPNPASLMFYPGKPVMEVGSADFPNSRSAMSSPLAKSLYGIDGITRVFFGSDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV K D W+ ++P + IM+ + SG P+ + +D E DS V Sbjct: 61 ITVTKSDDASWDFIKPEIFAAIMDFYSSGKPLFLDSNTA-AAMDTA----IHEDDSETVA 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 116 MIKELLETRIRPAVQDDGGDIEYRGFDPETGIVKLKMQGACSGCPSSSVTLKSGIENMLM 175 Query: 178 HFVPEVKDIR 187 H+VPEVK + Sbjct: 176 HYVPEVKGVE 185 >gi|24643765|ref|NP_728443.1| CG32857 [Drosophila melanogaster] gi|45551492|ref|NP_728447.2| CG32500 [Drosophila melanogaster] gi|45556188|ref|NP_996529.1| CG33502 [Drosophila melanogaster] gi|74866115|sp|Q8SY96|NFU1_DROME RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; Flags: Precursor gi|17946577|gb|AAL49319.1| RH16335p [Drosophila melanogaster] gi|22831388|gb|AAG22462.2| CG33502 [Drosophila melanogaster] gi|22831391|gb|AAN09001.1| CG32857 [Drosophila melanogaster] gi|45446754|gb|AAN09005.2| CG32500 [Drosophila melanogaster] gi|220949278|gb|ACL87182.1| CG32500-PA [synthetic construct] gi|220958368|gb|ACL91727.1| CG32500-PA [synthetic construct] Length = 283 Score = 170 bits (430), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 85/191 (44%), Positives = 119/191 (62%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G + F N A SPLA +F + G+ V+FG D Sbjct: 67 MFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHNSPLAKLLFRVEGVKGVFFGAD 126 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+T+ K + +W ++P V +IM+ F SG P++++ + +E D V Sbjct: 127 FVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDA-------QPNADTEILEDDDETV 179 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF GY G+V L M+G+CS CPS+ TLK GV N+L Sbjct: 180 MMIKELLDTRIRPTVQEDGGDIVFMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 240 YIPEVESVEQV 250 >gi|114799747|ref|YP_759252.1| NifU domain-containing protein [Hyphomonas neptunium ATCC 15444] gi|114739921|gb|ABI78046.1| NifU domain protein [Hyphomonas neptunium ATCC 15444] Length = 192 Score = 170 bits (430), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 89/191 (46%), Positives = 121/191 (63%), Gaps = 6/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQ-VVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNP T+KF+PGQ VV G F +A A S LA +F + G+ V+ G D Sbjct: 1 MFIQTEATPNPDTIKFLPGQPVVGDRGPFDFPDAASARTSLLARALFQVEGVERVFLGSD 60 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+++ K Q DW H++P VL IM+H++SG P+I G D ++ + +V Sbjct: 61 FVSINKAQDKDWRHVKPMVLAAIMDHYMSGLPVIEEGTSSASSGAD--ETEYEGETAEIV 118 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+++ RVRPAVA+DGGDI F + GIV LSMRGAC+GCPS++ TLK G+ N+L Sbjct: 119 NEIKELIETRVRPAVAQDGGDITFHRFDADTGIVHLSMRGACAGCPSSTMTLKQGIENML 178 Query: 177 NHFVPEVKDIR 187 +VPEV + Sbjct: 179 RTYVPEVTAVE 189 >gi|115946407|ref|XP_001184965.1| PREDICTED: similar to HIRA interacting protein 5 [Strongylocentrotus purpuratus] Length = 209 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 89/194 (45%), Positives = 118/194 (60%), Gaps = 14/194 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKF+PG VL G F +A A SPLA ++F I G+ V+FG DF Sbjct: 1 MFIQTQDTPNPNSLKFLPGVEVLGTGTKDFPSAMNAHGSPLARQLFRIEGVQGVFFGPDF 60 Query: 61 ITVGK---DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD--FIESDS 115 ITV K D DW L+P + +M+ F +G PI+ D+ D E D Sbjct: 61 ITVTKMDDDNIDWRVLKPEIYATVMDFFATGVPILT---------DETAPTDTEIQEDDD 111 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE+LD R+RP V DGGDIV+ G+ +G+V L ++GAC+ CPS+ TLK+GV N+ Sbjct: 112 ETVMMIKELLDTRIRPTVQEDGGDIVYMGFEEGVVKLKLQGACTSCPSSIVTLKHGVQNM 171 Query: 176 LNHFVPEVKDIRTV 189 L +VPEV + V Sbjct: 172 LQFYVPEVLSVEAV 185 >gi|115953358|ref|XP_798698.2| PREDICTED: similar to HIRA interacting protein 5, partial [Strongylocentrotus purpuratus] Length = 211 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 89/194 (45%), Positives = 118/194 (60%), Gaps = 14/194 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKF+PG VL G F +A A SPLA ++F I G+ V+FG DF Sbjct: 3 MFIQTQDTPNPNSLKFLPGVEVLGTGTKDFPSAMNAHGSPLARQLFRIEGVQGVFFGPDF 62 Query: 61 ITVGK---DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD--FIESDS 115 ITV K D DW L+P + +M+ F +G PI+ D+ D E D Sbjct: 63 ITVTKMDDDNIDWRVLKPEIYATVMDFFATGVPILT---------DETAPTDTEIQEDDD 113 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE+LD R+RP V DGGDIV+ G+ +G+V L ++GAC+ CPS+ TLK+GV N+ Sbjct: 114 ETVMMIKELLDTRIRPTVQEDGGDIVYMGFEEGVVKLKLQGACTSCPSSIVTLKHGVQNM 173 Query: 176 LNHFVPEVKDIRTV 189 L +VPEV + V Sbjct: 174 LQFYVPEVLSVEAV 187 >gi|225717260|gb|ACO14476.1| NFU1 iron-sulfur cluster scaffold homolog [Esox lucius] Length = 253 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 84/191 (43%), Positives = 121/191 (63%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKF+PG +VL G + F+ +EA PLA ++F I G+ V+ G DF Sbjct: 59 MFIQTQDTPNPNSLKFLPGCMVLERGTMDFAAPREAYCCPLARQLFGIDGVKGVFLGPDF 118 Query: 61 ITVGKDQYD--WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K D W+ ++P V IM+ F SG P+++ D D D D V+ Sbjct: 119 ITITKANVDLEWKLIKPDVFAAIMDFFASGLPVMNEE---DTPRADTAPSD---DDDEVI 172 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++++G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 173 TMIKELLDTRIRPTVQEDGGDVLYRGFEDGIVKLKLQGSCTSCPSSIVTLKSGIQNMLQF 232 Query: 179 FVPEVKDIRTV 189 +VPEV+ + V Sbjct: 233 YVPEVEGVEQV 243 >gi|268570156|ref|XP_002648431.1| C. briggsae CBR-LPD-8 protein [Caenorhabditis briggsae] gi|187039912|emb|CAP21246.1| CBR-LPD-8 protein [Caenorhabditis briggsae AF16] Length = 228 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 82/190 (43%), Positives = 121/190 (63%), Gaps = 12/190 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA--IHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 M+IQ ++TPNP +LKF+PGQ +L + + FS+A A+ SPLA ++ + G+ V+FG Sbjct: 21 MYIQVQETPNPLSLKFLPGQQLLPDASKTYDFSSAATAKQSPLAIKLLRVDGVKRVFFGE 80 Query: 59 DFITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 DFITV K + DW LRP + I +H +G +I+ +G+ E D+ Sbjct: 81 DFITVTKSDETVDWALLRPEIFSTIADHLQTGKSVINEAS--------ATAGEAEEDDNE 132 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 VV IKE+L+ R+RP V DGGDI + G+ DG+V L M+G+C+GCPS+ TLK G+ N+L Sbjct: 133 VVMMIKEILETRIRPMVQEDGGDITYVGFDDGVVKLKMQGSCTGCPSSGVTLKNGIENML 192 Query: 177 NHFVPEVKDI 186 +VPEVK++ Sbjct: 193 TFYVPEVKEV 202 >gi|125550903|gb|EAY96612.1| hypothetical protein OsI_18522 [Oryza sativa Indica Group] Length = 272 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 88/189 (46%), Positives = 122/189 (64%), Gaps = 8/189 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +L F PG+ V+ G+ F NA+ A SPLA +F+I G+ V+FG DF Sbjct: 72 MFIQTQSTPNPQSLMFYPGKPVMEVGSSDFPNARTAMTSPLAKALFAIDGVTRVFFGSDF 131 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K ++ W++L+P V IM+ + SG + + +D E DS +V Sbjct: 132 VTVTKSEETSWDYLKPEVFAAIMDFYSSGQSLFLDSSTA-ASMDTA----IHEDDSEIVA 186 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 187 MIKELLETRIRPAVQDDGGDIEYRGFDPETGIVKLKMQGACSGCPSSSVTLKSGIENMLM 246 Query: 178 HFVPEVKDI 186 H+VPEVK + Sbjct: 247 HYVPEVKGV 255 >gi|156548302|ref|XP_001602506.1| PREDICTED: similar to protein phosphatase 2a [Nasonia vitripennis] Length = 511 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 90/194 (46%), Positives = 121/194 (62%), Gaps = 14/194 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKFIPG VL +G F +A +A SPLA +F I G+ SV+FG D Sbjct: 67 MFIQTQDTPNPNSLKFIPGVEVLGKGQTKDFPSATDAFCSPLAKMLFRIEGVKSVFFGSD 126 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI--ESDS 115 FIT+ K + +W+ ++P + IM+ F SG PI S D + E D Sbjct: 127 FITITKIDEDVEWKLIKPEIFATIMDFFASGLPIFTEA---------QSSSDTVINEDDD 177 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 +VQ IKE+LD R+RP V DGGDIVF G+ +GIV L M+G+C+ CPS+ TLK GV N+ Sbjct: 178 EIVQMIKELLDTRIRPTVQEDGGDIVFMGFENGIVKLKMQGSCTSCPSSVVTLKNGVQNM 237 Query: 176 LNHFVPEVKDIRTV 189 + ++PEV + V Sbjct: 238 MQFYIPEVLGVEQV 251 >gi|6013069|emb|CAB57314.1| HIRA-interacting protein (HIRIP5) [Mus musculus] gi|17390830|gb|AAH18355.1| NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) [Mus musculus] Length = 199 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 87/191 (45%), Positives = 121/191 (63%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 1 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 60 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ + GS E D VV Sbjct: 61 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPP--PPGEAGS----EEDDEVV 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++++G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 115 AMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF 174 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 175 YIPEVEGVEQV 185 >gi|51473845|ref|YP_067602.1| hypothetical protein RT0659 [Rickettsia typhi str. Wilmington] gi|51460157|gb|AAU04120.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 190 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 85/191 (44%), Positives = 129/191 (67%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTEDTPNP +KF PGQ + ++ + FS E + S LA +F I + SV+FG D Sbjct: 1 MFIQTEDTPNPDAIKFFPGQEISIDQPVFFSELAEVKGRSTLAESLFHINNVKSVFFGSD 60 Query: 60 FITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K +W+ ++P +L +IM+HFISG P+ + + K+D+ I+ S + Sbjct: 61 FITVTKHAGGNWQVIKPEILMVIMDHFISGFPVFNE----NTKIDNEKHN--IDMLSEIE 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I E ++ RVRP V +DGGDI++KG+ G+V L++RGAC GCPS++ TLK G+ ++L H Sbjct: 115 KQIIETIETRVRPFVTQDGGDIIYKGFESGVVKLALRGACLGCPSSTITLKNGIESMLRH 174 Query: 179 FVPEVKDIRTV 189 F+PEV++++ V Sbjct: 175 FIPEVQEVQAV 185 >gi|198470316|ref|XP_002133420.1| GA22888 [Drosophila pseudoobscura pseudoobscura] gi|263504850|sp|B5DKJ8|NFU1_DROPS RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; Flags: Precursor gi|198145392|gb|EDY72048.1| GA22888 [Drosophila pseudoobscura pseudoobscura] Length = 286 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 85/191 (44%), Positives = 120/191 (62%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G + F + A SPLA +F + G+ +V+FG D Sbjct: 67 MFIQTQDTPNPDSLKFLPGVEVLGKGNTYDFPSGTAAHCSPLAKLLFRVEGVRAVFFGSD 126 Query: 60 FITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FIT+ K++ +W ++P V +IM+ F SG PI+H + ++ D V Sbjct: 127 FITISKEESAEWSLIKPEVFAVIMDFFASGLPILHEA-------RPNADTEILDDDDETV 179 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF Y +G+V L M+G+CS CPS+ TLK GV N+L Sbjct: 180 MMIKELLDTRIRPTVQEDGGDIVFISYENGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 240 YIPEVESVEQV 250 >gi|195169040|ref|XP_002025336.1| GL13432 [Drosophila persimilis] gi|263504975|sp|B4H303|NFU1_DROPE RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; Flags: Precursor gi|194108792|gb|EDW30835.1| GL13432 [Drosophila persimilis] Length = 282 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 85/191 (44%), Positives = 120/191 (62%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G + F + A SPLA +F + G+ +V+FG D Sbjct: 63 MFIQTQDTPNPDSLKFLPGVEVLGKGNTYDFPSGTAAHCSPLAKLLFRVEGVRAVFFGSD 122 Query: 60 FITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FIT+ K++ +W ++P V +IM+ F SG PI+H + ++ D V Sbjct: 123 FITISKEESAEWSLIKPEVFAVIMDFFASGLPILHEARPN-------ADTEILDDDDETV 175 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF Y +G+V L M+G+CS CPS+ TLK GV N+L Sbjct: 176 MMIKELLDTRIRPTVQEDGGDIVFISYENGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 235 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 236 YIPEVESVEQV 246 >gi|146326964|gb|AAI41716.1| Lpd-8 protein [Xenopus laevis] Length = 250 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 85/193 (44%), Positives = 122/193 (63%), Gaps = 13/193 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP ++KFIPG+ VL + F N A SPLA +F I G+ SV+FG DF Sbjct: 54 MFIQTQDTPNPNSVKFIPGRAVLDARTMDFPNPASAFCSPLARHLFRIEGVKSVFFGPDF 113 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD--FIESDSA 116 IT+ K + DW ++P + IM+ F +G P++ D+ GD E + Sbjct: 114 ITITKNGEDMDWNLIKPDIFATIMDFFSTGLPVVT---------DEAPRGDPAASEEEDE 164 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 VV IKE+LD R+RP V DGGD+++KG++DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 165 VVAMIKELLDTRIRPTVQEDGGDVLYKGFQDGIVQLKLQGSCTSCPSSIITLKSGIQNML 224 Query: 177 NHFVPEVKDIRTV 189 ++PEV+ + V Sbjct: 225 QFYIPEVEGVEQV 237 >gi|225464130|ref|XP_002264979.1| PREDICTED: similar to NFU4 (NFU domain protein 4) [Vitis vinifera] Length = 271 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 89/189 (47%), Positives = 120/189 (63%), Gaps = 8/189 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNPA+L F PG+ V+ G+ F N++ A SPLA ++ I GI V+FG DF Sbjct: 70 MFIQTQSTPNPASLMFYPGKPVMEVGSADFPNSRSAMSSPLAKSLYGIDGITRVFFGSDF 129 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV K D W+ ++P + IM+ + SG P+ + +D E DS V Sbjct: 130 ITVTKSDDASWDFIKPEIFAAIMDFYSSGKPLFLDSNTA-AAMDTA----IHEDDSETVA 184 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 185 MIKELLETRIRPAVQDDGGDIEYRGFDPETGIVKLKMQGACSGCPSSSVTLKSGIENMLM 244 Query: 178 HFVPEVKDI 186 H+VPEVK + Sbjct: 245 HYVPEVKGV 253 >gi|114108171|gb|AAI23134.1| Lpd-8 protein [Xenopus laevis] Length = 249 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 85/193 (44%), Positives = 122/193 (63%), Gaps = 13/193 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP ++KFIPG+ VL + F N A SPLA +F I G+ SV+FG DF Sbjct: 53 MFIQTQDTPNPNSVKFIPGRAVLDARTMDFPNPASAFCSPLARHLFRIEGVKSVFFGPDF 112 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD--FIESDSA 116 IT+ K + DW ++P + IM+ F +G P++ D+ GD E + Sbjct: 113 ITITKNGEDMDWNLIKPDIFATIMDFFSTGLPVVT---------DEAPRGDPAASEEEDE 163 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 VV IKE+LD R+RP V DGGD+++KG++DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 164 VVAMIKELLDTRIRPTVQEDGGDVLYKGFQDGIVQLKLQGSCTSCPSSIITLKSGIQNML 223 Query: 177 NHFVPEVKDIRTV 189 ++PEV+ + V Sbjct: 224 QFYIPEVEGVEQV 236 >gi|15604511|ref|NP_221029.1| hypothetical protein RP667 [Rickettsia prowazekii str. Madrid E] gi|3861205|emb|CAA15105.1| unknown [Rickettsia prowazekii] gi|292572295|gb|ADE30210.1| NifU-like protein [Rickettsia prowazekii Rp22] Length = 190 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 84/191 (43%), Positives = 128/191 (67%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTE+TPNP +KF PGQ + V+ + FS E + S LA +F I + SV+ G D Sbjct: 1 MFIQTEETPNPDAIKFFPGQEISVDQPVFFSELAEVKGRSALAESLFHINNVKSVFLGSD 60 Query: 60 FITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K +W+ ++P +L +IM+HFISG P+ + + K+DD ++ S + Sbjct: 61 FITVTKQARGNWQVIKPEILMVIMDHFISGFPVFNE----NTKIDDEKHN--LDMLSEIE 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I E ++ RVRP V +DGGDI++KG+ G+V L++RGAC GCPS++ TLK G+ ++L H Sbjct: 115 KQIIETIETRVRPFVTQDGGDIIYKGFESGVVKLALRGACLGCPSSTITLKNGIESMLKH 174 Query: 179 FVPEVKDIRTV 189 F+PEV++++ V Sbjct: 175 FIPEVQEVKAV 185 >gi|296448206|ref|ZP_06890103.1| Scaffold protein Nfu/NifU [Methylosinus trichosporium OB3b] gi|296254290|gb|EFH01420.1| Scaffold protein Nfu/NifU [Methylosinus trichosporium OB3b] Length = 183 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 100/190 (52%), Positives = 135/190 (71%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP+TLKF+PG+ VL GA F +A+ A SPLA + +I G+ +V FG DF Sbjct: 1 MFIQTESTPNPSTLKFLPGRPVLAAGAREFRDAQAAAASPLAGALLAINGVEAVMFGPDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE-SDSAVVQ 119 ++V K +W HL+P VLG IMEHF SG PI+ + G + +F + +D+ +V Sbjct: 61 VSVTKADAEWAHLKPAVLGTIMEHFTSGAPIVLDEG-------EAAPAEFFDPADAELVA 113 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +KE+L RV PAVARDGGDI F+G+RDGIV+L+M+G+CSGCPS+S TLK GV N+L H+ Sbjct: 114 TLKELLVTRVTPAVARDGGDIAFRGFRDGIVYLAMKGSCSGCPSSSATLKNGVENLLRHY 173 Query: 180 VPEVKDIRTV 189 VP+V+ + V Sbjct: 174 VPQVRSVEQV 183 >gi|34500321|gb|AAQ73785.1| NifU-like protein HIRIP5 [Mus musculus] Length = 245 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 87/191 (45%), Positives = 121/191 (63%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 47 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 106 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ + GS E D VV Sbjct: 107 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEET--PPPPGEAGS----EEDDEVV 160 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++++G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 161 AMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF 220 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 221 YIPEVEGVEQV 231 >gi|328862177|gb|EGG11278.1| hypothetical protein MELLADRAFT_41822 [Melampsora larici-populina 98AG31] Length = 292 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 84/194 (43%), Positives = 125/194 (64%), Gaps = 8/194 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL--VEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 +FIQTE TPNP LKFIPG V+ G + F + SPLA +F IPGI S++FG Sbjct: 74 IFIQTETTPNPDALKFIPGVPVMGKSNGTLEFLSNSNPNSSPLAKSLFKIPGIKSLFFGP 133 Query: 59 DFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 DFI++ KD+ +W ++P + ++ME F SG PI+ + G+ +D +ESDS V Sbjct: 134 DFISINKDEETNWSIIKPEIYSLMMEFFSSGQPILTDESEGNQGPEDT---RVLESDSEV 190 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANI 175 + IKE+LD RVRP++ DGGD+ +KG+ + G+V L ++G+C GC S++ TLK G+ + Sbjct: 191 IAMIKELLDTRVRPSIQEDGGDLEYKGFDEETGVVTLMLKGSCRGCDSSTVTLKSGIERM 250 Query: 176 LNHFVPEVKDIRTV 189 L H++PEV+ + V Sbjct: 251 LMHYIPEVQAVEQV 264 >gi|148666781|gb|EDK99197.1| mCG130855, isoform CRA_a [Mus musculus] Length = 255 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 87/191 (45%), Positives = 121/191 (63%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 57 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 116 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ + GS E D VV Sbjct: 117 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEET--PPPPGEAGS----EEDDEVV 170 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++++G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 171 AMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF 230 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 231 YIPEVEGVEQV 241 >gi|282154801|ref|NP_064429.2| NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 2 precursor [Mus musculus] gi|205830867|sp|Q9QZ23|NFU1_MOUSE RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; AltName: Full=HIRA-interacting protein 5; Short=mHIRIP5; Flags: Precursor gi|12834577|dbj|BAB22965.1| unnamed protein product [Mus musculus] Length = 255 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 87/191 (45%), Positives = 121/191 (63%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 57 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 116 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ + GS E D VV Sbjct: 117 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEET--PPPPGEAGS----EEDDEVV 170 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++++G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 171 AMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF 230 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 231 YIPEVEGVEQV 241 >gi|195568040|ref|XP_002107563.1| GD15490 [Drosophila simulans] gi|263505455|sp|B4R3T1|NFU1_DROSI RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; Flags: Precursor gi|194204973|gb|EDX18549.1| GD15490 [Drosophila simulans] Length = 283 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 85/191 (44%), Positives = 119/191 (62%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G + F + A SPLA +F + G+ V+FG D Sbjct: 67 MFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPHGTTAHSSPLAKLLFRVEGVKGVFFGAD 126 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FIT+ K + +W ++P V +IM+ F SG P++++ + +E D V Sbjct: 127 FITISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDA-------QPNADTEILEDDDETV 179 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF GY G+V L M+G+CS CPS+ TLK GV N+L Sbjct: 180 MMIKELLDTRIRPTVQEDGGDIVFMGYEAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 240 YIPEVESVEQV 250 >gi|57239492|ref|YP_180628.1| hypothetical protein Erum7660 [Ehrlichia ruminantium str. Welgevonden] gi|58579471|ref|YP_197683.1| hypothetical protein ERWE_CDS_08070 [Ehrlichia ruminantium str. Welgevonden] gi|57161571|emb|CAH58499.1| putative NifU-related protein [Ehrlichia ruminantium str. Welgevonden] gi|58418097|emb|CAI27301.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] Length = 185 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 89/191 (46%), Positives = 132/191 (69%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAI-HFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ EDTPNP TLKF+PG + + G I F+++ AE SP A +F I I SV+FG D Sbjct: 1 MFIQIEDTPNPNTLKFMPG-IPVNNGKIGEFTDSITAESSPFAKALFEIEHIVSVFFGGD 59 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FI+V K +W+ L+P +L +IM+ F++ +P N + + +D+ F D +V Sbjct: 60 FISVTKSSDIEWDVLKPEILTVIMD-FLTLNP---NDSVENNDEEDLQEF-FDAKDEEIV 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +IKE++D+ ++PAVA+DGGDI FKGY +GIVF+ +RGACSGCPSAS TLK G+ N+L + Sbjct: 115 SKIKELIDDYIKPAVAQDGGDIKFKGYSNGIVFVKLRGACSGCPSASITLKEGIYNMLTY 174 Query: 179 FVPEVKDIRTV 189 ++P+++ + +V Sbjct: 175 YLPDIQSVESV 185 >gi|308492754|ref|XP_003108567.1| CRE-LPD-8 protein [Caenorhabditis remanei] gi|308248307|gb|EFO92259.1| CRE-LPD-8 protein [Caenorhabditis remanei] Length = 223 Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 81/190 (42%), Positives = 121/190 (63%), Gaps = 12/190 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA--IHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 M+IQ ++TPNP +LKF+PGQ +L + + F++A A+ SPLA ++ + G+ V+FG Sbjct: 16 MYIQVQETPNPLSLKFLPGQQLLPDASKTYDFNSAAAAKQSPLAVKLLRVDGVKRVFFGE 75 Query: 59 DFITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 DF+TV K + DW LRP + I +H +G P+I+ D G+ D+ Sbjct: 76 DFVTVTKADEHVDWALLRPEIFSTIADHLQTGKPVINEVAATD--------GEAEVEDNE 127 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 VV IKE+L+ R+RP V DGGDI + G+ DG+V L M+G+C+GCPS+ TLK G+ N+L Sbjct: 128 VVMMIKEILETRIRPMVQEDGGDITYVGFDDGVVKLKMQGSCTGCPSSGVTLKNGIENML 187 Query: 177 NHFVPEVKDI 186 +VPEVK++ Sbjct: 188 TFYVPEVKEV 197 >gi|165933598|ref|YP_001650387.1| mitochondrial-type Fe-S cluster assembly protein NFU [Rickettsia rickettsii str. Iowa] gi|165908685|gb|ABY72981.1| mitochondrial-type Fe-S cluster assembly protein NFU [Rickettsia rickettsii str. Iowa] Length = 190 Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 82/191 (42%), Positives = 129/191 (67%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQT DTPNP + F PGQ + + + FS E + S LA +F I + SV+FG D Sbjct: 1 MFIQTADTPNPDAITFFPGQKISSDQPVFFSELAEVKGRSKLAESLFYINNVKSVFFGSD 60 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K + +W+ ++P +L +IM+HF+SG P+ + K D++ ++ S + Sbjct: 61 FITVTKQAEGNWQVIKPEILMVIMDHFVSGLPVFEE----NTKADNVNHN--LDGLSEIE 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I E+++ RVRP+VA+DGGDI++KG+ +G+V L++RGAC GCPS++ TL+ G+ ++L H Sbjct: 115 KQIVEIIETRVRPSVAQDGGDIIYKGFENGVVKLALRGACLGCPSSTITLRNGIESMLKH 174 Query: 179 FVPEVKDIRTV 189 FVPEV+++ V Sbjct: 175 FVPEVQEVEAV 185 >gi|118403546|ref|NP_001072356.1| NFU1 iron-sulfur cluster scaffold homolog [Xenopus (Silurana) tropicalis] gi|111307911|gb|AAI21453.1| HIRA interacting protein 5 [Xenopus (Silurana) tropicalis] Length = 199 Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 84/193 (43%), Positives = 122/193 (63%), Gaps = 13/193 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP ++KFIPG+ VL + F + A SPLA +F I G+ SV+ G DF Sbjct: 1 MFIQTQDTPNPNSVKFIPGRAVLDARTMDFPSPASAFCSPLARHLFRIDGVKSVFLGPDF 60 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI--ESDSA 116 IT+ K ++ DW ++P + IM+ F SG P++ +D GD E + Sbjct: 61 ITITKNSEELDWNLIKPDIYATIMDFFASGLPVVT---------EDAPRGDAAASEEEDE 111 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 VV IKE+LD R+RP V DGGD+++KG++DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 112 VVAMIKELLDTRIRPTVQEDGGDVLYKGFQDGIVQLKLQGSCTSCPSSIITLKSGIQNML 171 Query: 177 NHFVPEVKDIRTV 189 ++PEV+ + V Sbjct: 172 QFYIPEVEGVEQV 184 >gi|157828872|ref|YP_001495114.1| hypothetical protein A1G_05615 [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801353|gb|ABV76606.1| hypothetical protein A1G_05615 [Rickettsia rickettsii str. 'Sheila Smith'] Length = 190 Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 82/191 (42%), Positives = 129/191 (67%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQT DTPNP + F PGQ + + + FS E + S LA +F I + SV+FG D Sbjct: 1 MFIQTADTPNPDAITFFPGQEISSDQPVFFSELAEVKGRSKLAESLFYINNVKSVFFGSD 60 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K + +W+ ++P +L +IM+HF+SG P+ + K D++ ++ S + Sbjct: 61 FITVTKQAEGNWQVIKPEILMVIMDHFVSGLPVFEE----NTKADNVNHN--LDGLSEIE 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I E+++ RVRP+VA+DGGDI++KG+ +G+V L++RGAC GCPS++ TL+ G+ ++L H Sbjct: 115 KQIVEIIETRVRPSVAQDGGDIIYKGFENGVVKLALRGACLGCPSSTITLRNGIESMLKH 174 Query: 179 FVPEVKDIRTV 189 FVPEV+++ V Sbjct: 175 FVPEVQEVEAV 185 >gi|239047306|ref|NP_001131382.2| hypothetical protein LOC100192708 [Zea mays] gi|238908578|gb|ACF79773.2| unknown [Zea mays] Length = 268 Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 88/189 (46%), Positives = 120/189 (63%), Gaps = 8/189 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +L F PG+ V+ G+ F NA+ A SPLA F+I G+ V+FG DF Sbjct: 71 MFIQTQSTPNPQSLMFYPGKPVMEIGSSDFPNARTAMTSPLAKSPFAIDGVTRVFFGSDF 130 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K ++ W+ L+P V IM+ + SG P+ + +D E DS +V Sbjct: 131 VTVTKSEETSWDCLKPEVFAAIMDFYSSGQPLFLDSNAA-ASMDTA----IHEDDSEIVA 185 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ G V L M+GACSGCPS+S TLK G+ N+L Sbjct: 186 MIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLKMQGACSGCPSSSVTLKSGIENMLM 245 Query: 178 HFVPEVKDI 186 H+VPEVK + Sbjct: 246 HYVPEVKGV 254 >gi|255568026|ref|XP_002524990.1| HIRA-interacting protein, putative [Ricinus communis] gi|223535734|gb|EEF37397.1| HIRA-interacting protein, putative [Ricinus communis] Length = 271 Score = 167 bits (423), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 87/189 (46%), Positives = 119/189 (62%), Gaps = 8/189 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP++L F PG+ V+ G++ F NA+ A SPLA ++ I G V+FG DF Sbjct: 70 MFIQTQSTPNPSSLMFYPGKPVMEVGSVDFPNARAALNSPLAKSLYGIDGTTRVFFGSDF 129 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV K D W+ L+P + IM+ + SG P+ + + K + DS V Sbjct: 130 ITVTKSDDVSWDLLKPEIFAAIMDFYSSGQPLFLDSEIAASK-----DTAIHKDDSETVA 184 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 185 MIKELLETRIRPAVQDDGGDIEYRGFDPETGIVKLKMQGACSGCPSSSVTLKSGIENMLM 244 Query: 178 HFVPEVKDI 186 H+V EVK + Sbjct: 245 HYVSEVKGV 253 >gi|156389173|ref|XP_001634866.1| predicted protein [Nematostella vectensis] gi|156221954|gb|EDO42803.1| predicted protein [Nematostella vectensis] Length = 186 Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 85/191 (44%), Positives = 119/191 (62%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQ ++TPNP +LKF+PG +VL G ++F ++ A SPLA +F I G+ V FG +F Sbjct: 1 MFIQVQETPNPNSLKFVPGVLVLESGTVNFDSSSSAHRSPLARNLFRINGVKGVMFGPEF 60 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K ++ W L+P + IM+ F S PI+ + D GS + D V Sbjct: 61 ITVTKSDEEVQWSVLKPEIFATIMDFFSSNLPIMTE----EEPPQDTGSCN----DDDTV 112 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDI+FKG++DGIV L M+GAC+ CPS+ TLK G+ N++ Sbjct: 113 LMIKELLDTRIRPTVQEDGGDIIFKGFKDGIVKLKMQGACASCPSSIVTLKNGIENMMQF 172 Query: 179 FVPEVKDIRTV 189 ++PEV + V Sbjct: 173 YIPEVVSVEQV 183 >gi|302769472|ref|XP_002968155.1| hypothetical protein SELMODRAFT_67451 [Selaginella moellendorffii] gi|300163799|gb|EFJ30409.1| hypothetical protein SELMODRAFT_67451 [Selaginella moellendorffii] Length = 187 Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 89/187 (47%), Positives = 121/187 (64%), Gaps = 8/187 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +FIQ + TPNPA+L F PG+ V+ G+ F NA+ A SPLA +F I G+ V+FG DF Sbjct: 6 LFIQVQTTPNPASLIFSPGKPVMEIGSSDFPNARTAMKSPLAKSLFGIDGVTRVFFGSDF 65 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+ L+P V IM+ + SG P+ ++ K + GD D VV Sbjct: 66 VTVTKSDDTEWDVLKPEVFAAIMDFYASGQPLFYSAQAAAPKDTAIEEGD----DETVVM 121 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ GIV L M+GACSGCPS++ TLK G+ N+L Sbjct: 122 -IKELLETRIRPAVKDDGGDIEYRGFDRESGIVELKMQGACSGCPSSAVTLKSGIENMLM 180 Query: 178 HFVPEVK 184 H+VPEVK Sbjct: 181 HYVPEVK 187 >gi|302773942|ref|XP_002970388.1| hypothetical protein SELMODRAFT_93100 [Selaginella moellendorffii] gi|300161904|gb|EFJ28518.1| hypothetical protein SELMODRAFT_93100 [Selaginella moellendorffii] Length = 210 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 89/187 (47%), Positives = 122/187 (65%), Gaps = 8/187 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +FIQ + TPNPA+L F PG+ V+ G+ F NA+ A SPLA +F I G+ V+FG DF Sbjct: 10 LFIQVQTTPNPASLIFSPGKPVMEIGSSDFPNARTAMKSPLAKSLFGIDGVTRVFFGSDF 69 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+ L+P V IM+ + SG P+ ++ + K + GD D VV Sbjct: 70 VTVTKSDDTEWDVLKPEVFAAIMDFYASGQPLFYSAQVEAPKDTAIEEGD----DETVVM 125 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ GIV L M+GACSGCPS++ TLK G+ N+L Sbjct: 126 -IKELLETRIRPAVKDDGGDIEYRGFDRESGIVELKMQGACSGCPSSAVTLKSGIENMLM 184 Query: 178 HFVPEVK 184 H+VPEVK Sbjct: 185 HYVPEVK 191 >gi|18402817|ref|NP_566673.1| NFU4; structural molecule [Arabidopsis thaliana] gi|75273382|sp|Q9LIG6|NIFU4_ARATH RecName: Full=NifU-like protein 4, mitochondrial; Short=AtNfu-III; Short=AtNfu4; Flags: Precursor gi|13899085|gb|AAK48964.1|AF370537_1 Unknown protein [Arabidopsis thaliana] gi|9294004|dbj|BAB01907.1| unnamed protein product [Arabidopsis thaliana] gi|18377516|gb|AAL66924.1| unknown protein [Arabidopsis thaliana] gi|28207822|emb|CAD55561.1| NFU4 protein [Arabidopsis thaliana] gi|332642927|gb|AEE76448.1| NifU-like protein 4 [Arabidopsis thaliana] Length = 283 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 87/190 (45%), Positives = 118/190 (62%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP++L F PG+ V+ G+ F N + A SPLA I+SI G+ V+FG DF Sbjct: 80 MFIQTQSTPNPSSLMFYPGKPVMEVGSADFPNVRSALGSPLAKSIYSIDGVVRVFFGSDF 139 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D W+ L+P + +M+ + SG P+ + K + E DS V Sbjct: 140 VTVTKSDDVSWDILKPEIFAAVMDFYSSGQPLFLDSQAAAAKDTAIS-----EDDSETVA 194 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI + G+ GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 195 MIKELLETRIRPAVQDDGGDIEYCGFDPESGIVKLRMQGACSGCPSSSVTLKSGIENMLM 254 Query: 178 HFVPEVKDIR 187 H+V EVK + Sbjct: 255 HYVSEVKGVE 264 >gi|58617525|ref|YP_196724.1| hypothetical protein ERGA_CDS_07980 [Ehrlichia ruminantium str. Gardel] gi|58417137|emb|CAI28250.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel] Length = 185 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 87/191 (45%), Positives = 131/191 (68%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAI-HFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ EDTPNP TLKF+PG + + G I F+++ AE SP A +F I I V+FG D Sbjct: 1 MFIQIEDTPNPNTLKFMPG-IPVNNGKIGEFTDSITAESSPFAKALFEIEHIVGVFFGGD 59 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F++V K +W+ L+P +L +IM+ F++ +P N + + +D+ F D +V Sbjct: 60 FVSVTKSSDIEWDVLKPEILTVIMD-FLTLNP---NDSVENHDEEDLQEF-FDAKDEEIV 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +IKE++D+ ++PAVA+DGGDI FKGY +GIVF+ +RGACSGCPSAS TLK G+ N+L + Sbjct: 115 SKIKELIDDYIKPAVAQDGGDIKFKGYSNGIVFVKLRGACSGCPSASITLKEGIYNMLTY 174 Query: 179 FVPEVKDIRTV 189 ++P+++ + +V Sbjct: 175 YLPDIQSVESV 185 >gi|167520450|ref|XP_001744564.1| hypothetical protein [Monosiga brevicollis MX1] gi|163776895|gb|EDQ90513.1| predicted protein [Monosiga brevicollis MX1] Length = 209 Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 83/190 (43%), Positives = 119/190 (62%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT DTPNP +L F PG +L + ++A A SPLA +F + G+ SV+ DF Sbjct: 1 MFIQTRDTPNPNSLMFYPGVDILPGSTLELTSAAAAHQSPLARALFRVDGVKSVFLASDF 60 Query: 61 ITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +T+ KD+ +W L+P + +M+ F S P++ + + D S E D +V Sbjct: 61 VTINKDEAAEWSTLKPNIYATMMDFFASNQPVVLDSY--EAPTDTAVS----EDDDEIVA 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+LD+R+RPAV DGGDI+F+G+ DGIV L + GAC+GCPS+ TLK GV N+L H+ Sbjct: 115 MIKELLDSRIRPAVQEDGGDILFQGFVDGIVQLRLSGACTGCPSSIFTLKNGVENMLMHY 174 Query: 180 VPEVKDIRTV 189 +PEV+ + V Sbjct: 175 IPEVEGVEQV 184 >gi|332028326|gb|EGI68373.1| NFU1 iron-sulfur cluster scaffold-like protein, mitochondrial [Acromyrmex echinatior] Length = 211 Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 86/188 (45%), Positives = 119/188 (63%), Gaps = 16/188 (8%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKFIPG VL EG F +AK+A SPLA +F I G+ +++FG D Sbjct: 1 MFIQTQDTPNPNSLKFIPGVSVLGEGCTKDFPSAKDAYCSPLAKMLFRIEGVKAIFFGPD 60 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGG--LGDMKLDDMGSGDFIESDS 115 FITV K + +W+ L+P + IM+ F SG P++ D +++ D Sbjct: 61 FITVTKVDEDVEWKLLKPEIFATIMDFFASGLPVMDEASQPAADTQIN--------AEDD 112 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 VVQ IKE+LD R+RP V DGGDI G+ +GIV L M+G+C+ CPS+ TL+ GV N+ Sbjct: 113 EVVQMIKELLDTRIRPTVQEDGGDI---GFEEGIVKLKMQGSCTNCPSSVVTLRNGVQNM 169 Query: 176 LNHFVPEV 183 + ++PEV Sbjct: 170 MQFYIPEV 177 >gi|67458659|ref|YP_246283.1| NifU-like domain-containing protein [Rickettsia felis URRWXCal2] gi|67004192|gb|AAY61118.1| NifU-like domain [Rickettsia felis URRWXCal2] Length = 190 Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 82/181 (45%), Positives = 123/181 (67%), Gaps = 8/181 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTEDTPNP +KF PGQ + E + FS+ E + S LA +F I + SV+FG D Sbjct: 1 MFIQTEDTPNPDAIKFFPGQEISSEQPVFFSDISEVKGRSKLAESLFYINNVKSVFFGSD 60 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K + +W+ ++P VL +IM+HF+SG P+ K D++ ++ S + Sbjct: 61 FITVTKQAESNWQVIKPEVLMVIMDHFVSGFPVFEES----TKADNVNHN--LDGLSEIE 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I E+++ RVRP+VA+DGGDI++KG+ +G+V L++RGAC GCPS++ TLK G+ ++L H Sbjct: 115 KQIVEIIETRVRPSVAQDGGDIIYKGFENGVVKLALRGACLGCPSSTITLKNGIESMLKH 174 Query: 179 F 179 F Sbjct: 175 F 175 >gi|291225596|ref|XP_002732785.1| PREDICTED: GM13534-like [Saccoglossus kowalevskii] Length = 275 Score = 164 bits (416), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 88/193 (45%), Positives = 117/193 (60%), Gaps = 13/193 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT +TPNP +LKFIPG VL G + F A+ A SPLA ++F I G+ SV+ G DF Sbjct: 65 MFIQTHETPNPNSLKFIPGVPVLGSGTMDFPTARVAHGSPLARQLFRIDGVKSVFLGPDF 124 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD--FIESDSA 116 IT+ K D +W+ ++P V +M+ F +G PI+ D+ S D D Sbjct: 125 ITITKHDDDSEWKIIKPEVYAAVMDFFATGLPIL---------TDEQPSADTEIHPDDDE 175 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V IKE+LD R+RP V DGGDIV+ G+ GIV L M+G+C+ CPS+ TLK GV N+L Sbjct: 176 TVAMIKELLDTRIRPTVQEDGGDIVYMGFEKGIVKLKMQGSCTSCPSSVVTLKSGVQNML 235 Query: 177 NHFVPEVKDIRTV 189 +VPEV + V Sbjct: 236 QFYVPEVLSVEQV 248 >gi|239799267|dbj|BAH70563.1| ACYPI005854 [Acyrthosiphon pisum] Length = 254 Score = 164 bits (415), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 88/193 (45%), Positives = 121/193 (62%), Gaps = 12/193 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP ++KF+PG VL +G + F NA A SPLA +F I G+ SV+FG D Sbjct: 43 MFIQTQDTPNPNSVKFLPGVQVLEKGHTMDFPNATAAYCSPLAKVLFRIEGVKSVFFGSD 102 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGG-LGDMKLDDMGSGDFIESDSA 116 +IT+ K D +W L+P + IM+ F SG PI+ + D ++ E D+ Sbjct: 103 YITLTKTDDDIEWMVLKPEIYATIMDFFASGLPILTDAKPTSDTQIH--------EDDNE 154 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V IKE+LD+R+RP V DGGDI+F GY GIV L ++G+C+ CPS+ TLK GV N+L Sbjct: 155 TVMMIKELLDSRIRPTVQEDGGDILFIGYDAGIVKLKLQGSCTSCPSSVVTLKGGVQNML 214 Query: 177 NHFVPEVKDIRTV 189 ++PEV + V Sbjct: 215 QFYIPEVIAVEQV 227 >gi|254797154|ref|YP_003081992.1| hira-interacting protein 5 [Neorickettsia risticii str. Illinois] gi|254590399|gb|ACT69761.1| hira-interacting protein 5 [Neorickettsia risticii str. Illinois] Length = 180 Score = 164 bits (415), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 77/190 (40%), Positives = 122/190 (64%), Gaps = 11/190 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP LKF PG +L G F A +A + L ++ I G++ V G DF Sbjct: 1 MFIQTEHTPNPNVLKFFPGVNILDSGIADFVTASDASGNKLPEMLWEIQGVSGVMLGVDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ++V K + +W+ L+P + +++E+F +G + + + +E V + Sbjct: 61 VSVSKTEDAEWDVLKPQIFSVLVEYFTTGSDFVR----------PVTEDEEVECTDEVSK 110 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +I+E++D +VRP+V DGG++VFKGY+DGIV+L ++GAC+GCPSAS TLK G+ N+L ++ Sbjct: 111 KIREIIDTKVRPSVIEDGGNVVFKGYKDGIVYLKLQGACAGCPSASVTLKDGIENLLQYY 170 Query: 180 VPEVKDIRTV 189 VPEV++++ V Sbjct: 171 VPEVREVQQV 180 >gi|299755866|ref|XP_001828936.2| NifU-like protein c [Coprinopsis cinerea okayama7#130] gi|298411416|gb|EAU92943.2| NifU-like protein c [Coprinopsis cinerea okayama7#130] Length = 291 Score = 164 bits (414), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 85/194 (43%), Positives = 122/194 (62%), Gaps = 9/194 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPN +LKFIPG V+ EG+ F + + A SPLA R+ I GI V++G DF Sbjct: 66 MFIQTESTPNEDSLKFIPGVPVMEEGSAEFLDTRSALASPLALRLMGIEGITGVFYGPDF 125 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD--FIESDSAV 117 +TV K + W ++P V ++ME F SG P+ + + + G D +++DS Sbjct: 126 VTVSKSSDHPWAVVKPEVYALLMEFFSSGQPLFRS----EEDREAAGPQDTRILDTDSET 181 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE+L+ RVRPA+ DGGDI ++G+ DGIV + ++G+C GC S+S TLK G+ + Sbjct: 182 VAMIKELLETRVRPAIMEDGGDIEYRGFDENDGIVRVKLKGSCRGCESSSVTLKSGIERM 241 Query: 176 LNHFVPEVKDIRTV 189 L H+VPEVK + + Sbjct: 242 LMHYVPEVKGVEQI 255 >gi|225707158|gb|ACO09425.1| HIRA-interacting protein 5 [Osmerus mordax] Length = 268 Score = 163 bits (413), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 84/191 (43%), Positives = 118/191 (61%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 + IQT+DTPNP +LKF+PG+ VL G + F + AE S LA +F I G+ SV+FG DF Sbjct: 64 LSIQTQDTPNPRSLKFLPGKPVLGTGTLDFPTPQNAECSSLAKDLFEIEGVKSVFFGPDF 123 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K D +W +++ + I + F SG PI G+ + E D +V Sbjct: 124 ITVTKADDDVEWTNIKRHAVEAITKFFDSGAPI--TTGVSHHE------SSHSEDDDEIV 175 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++FKG+ DG V L + G+C+GCPS+S TL+ G+ N+L Sbjct: 176 SIIKELLDTRIRPTVQEDGGDVIFKGFEDGTVKLKLVGSCTGCPSSSVTLRNGIQNMLQF 235 Query: 179 FVPEVKDIRTV 189 ++PEV D+ V Sbjct: 236 YIPEVDDVEQV 246 >gi|209484091|gb|ACI47520.1| iron-sulfer cluster scaffold protein NFU4 [Eucalyptus grandis] Length = 243 Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 87/190 (45%), Positives = 118/190 (62%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +L F PG+ V+ G+ F NA+ + S LA +F I G+ V++G DF Sbjct: 40 MFIQTQSTPNPMSLMFYPGKPVMEVGSADFPNARTSMNSALARALFGIDGVTRVFYGSDF 99 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D W+ L+P + IM+ + SG P+ L M + E DS V Sbjct: 100 VTVTKSDDASWDLLKPEIFAAIMDFYSSGQPLF----LDSQTASAMDTA-IHEDDSETVA 154 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 155 MIKELLETRIRPAVQDDGGDIEYRGFDLDTGIVKLRMQGACSGCPSSSVTLKSGIENMLM 214 Query: 178 HFVPEVKDIR 187 H+VPEVK + Sbjct: 215 HYVPEVKAVE 224 >gi|88658493|ref|YP_507026.1| NifU domain-containing protein [Ehrlichia chaffeensis str. Arkansas] gi|88599950|gb|ABD45419.1| NifU domain protein [Ehrlichia chaffeensis str. Arkansas] Length = 186 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 84/190 (44%), Positives = 128/190 (67%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQ +TPNP TLKF+PG + F+++ AE S LA+ +F I + SV+FG DF Sbjct: 1 MFIQIGETPNPNTLKFMPGMPINNGKVSEFADSVAAEGSSLATALFKIEYVKSVFFGGDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ++V K D +W+ L+P +L +IME F++ + +L++ F E D +V Sbjct: 61 VSVTKSDDIEWDVLKPEILTVIME-FLTLNSDNATESFDQEELEEF----FDEKDIEMVG 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE++DN V+PAV +DGGDI FKGY +GIVF+ +RGACSGCPSAS TLK G+ N+L+++ Sbjct: 116 KIKELIDNYVKPAVIQDGGDIKFKGYSNGIVFVKLRGACSGCPSASITLKEGIYNMLSYY 175 Query: 180 VPEVKDIRTV 189 +P+++ + ++ Sbjct: 176 IPDIQGVESI 185 >gi|88608783|ref|YP_506689.1| NifU-like domain-containing protein [Neorickettsia sennetsu str. Miyayama] gi|88600952|gb|ABD46420.1| NifU-like domain protein [Neorickettsia sennetsu str. Miyayama] Length = 180 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 77/190 (40%), Positives = 120/190 (63%), Gaps = 11/190 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP LKF PG +L G F +A L ++ I G+ V G DF Sbjct: 1 MFIQTEHTPNPNVLKFFPGVKILDSGTADFVTFSDASGHKLPEMLWEIQGVCGVMLGVDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ++V K + +W+ L+P + G+++E+F +G + + + +E V + Sbjct: 61 VSVSKTEDAEWDVLKPQIFGVLVEYFTTGSDFVRP----------VTEDEEVECTDEVSK 110 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +I+E++D +VRP+V DGG+IVFKGY+DGIV+L ++GAC+GCPSAS TLK G+ N+L ++ Sbjct: 111 KIQEIIDTKVRPSVIEDGGNIVFKGYKDGIVYLKLQGACAGCPSASVTLKDGIENLLQYY 170 Query: 180 VPEVKDIRTV 189 +PEV++++ V Sbjct: 171 IPEVREVQQV 180 >gi|296421235|ref|XP_002840171.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636384|emb|CAZ84362.1| unnamed protein product [Tuber melanosporum] Length = 279 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 81/192 (42%), Positives = 123/192 (64%), Gaps = 9/192 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG--AIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 +FIQTE TPNP+ LKFIPG VL EG + + + +E SPLA ++F++ G+ SV++G Sbjct: 48 LFIQTESTPNPSALKFIPGLPVLPEGCQSQEYIDGRETHNSPLARKLFAVDGVRSVFYGP 107 Query: 59 DFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 DFIT+ KD+ W L+ V +I E SG+P+I G + + E DS V Sbjct: 108 DFITITKDEETQWAFLKAEVYSLITEALNSGEPVILEGTM------ESSDTQREEGDSEV 161 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IKE+L+ R+RPA+ DGGDI ++G+ +G+V L +RGAC C S++ TLK G+ ++L Sbjct: 162 VGMIKELLETRIRPAIQEDGGDIEYRGFENGVVKLKLRGACRTCDSSTVTLKNGIESMLM 221 Query: 178 HFVPEVKDIRTV 189 H++ EV+ ++ + Sbjct: 222 HYIEEVQSVQQI 233 >gi|85083846|ref|XP_957202.1| HIRA-interacting protein 5 [Neurospora crassa OR74A] gi|18376131|emb|CAD21196.1| conserved hypothetical protein [Neurospora crassa] gi|28918289|gb|EAA27966.1| HIRA-interacting protein 5 [Neurospora crassa OR74A] Length = 326 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 86/203 (42%), Positives = 125/203 (61%), Gaps = 14/203 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEAEI----SPLASRIFSIPGIA 52 +FIQTE+TPNP +LKF+P Q V+ + I + NA+ SPLA+++ +I G+ Sbjct: 83 IFIQTENTPNPDSLKFLPNQKVIPDSIKTPFIEYMNARSTIAPPYPSPLAAQLMNIEGVT 142 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH-----NGGLGDMKLDDMG 106 SV++G DFITV K +W H+RP V +I E SG I++ G + D+ Sbjct: 143 SVFYGTDFITVTKSADANWAHIRPEVFALITETITSGQTIVNVVERNEGEESTQESDEKD 202 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 S + E+DS VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C S++ Sbjct: 203 SLAYDENDSEVVGMIKELLETRIRPAIQEDGGDIEFRGFEDGIVKLKLRGACRTCDSSTV 262 Query: 167 TLKYGVANILNHFVPEVKDIRTV 189 TLK G+ +L H++ EV+ + V Sbjct: 263 TLKNGIEGMLMHYIEEVQGVEQV 285 >gi|4680705|gb|AAD27742.1|AF132967_1 CGI-33 protein [Homo sapiens] Length = 231 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 87/193 (45%), Positives = 122/193 (63%), Gaps = 13/193 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD- 59 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+F +D Sbjct: 35 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFF-WDQ 93 Query: 60 -FITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 FITV K+ + DW L+P + IM+ F SG P++ + + GS E D Sbjct: 94 IFITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTE----ETPPGEAGS----EEDDE 145 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 VV IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 146 VVAMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNML 205 Query: 177 NHFVPEVKDIRTV 189 ++PEV+ + V Sbjct: 206 QFYIPEVEGVEQV 218 >gi|326430239|gb|EGD75809.1| HIRA-interacting protein 5 [Salpingoeca sp. ATCC 50818] Length = 269 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 83/190 (43%), Positives = 112/190 (58%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT DTPNP +L F PG V G F+ + SPLA + I G+ V+ G DF Sbjct: 61 MFIQTRDTPNPNSLMFYPGTEVTGTGTADFARGGDTSKSPLARVLLRIDGVQGVFLGPDF 120 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 IT+ K++ DW ++P + G IM+ F S P++ G + + E D VV Sbjct: 121 ITISKEEDVDWGVMKPHIFGSIMDFFASNQPVLLEGEEAN------AASTASEEDDEVVS 174 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+LD R+RPAV DGGDI+F + +GIV L + GAC GCPS+ TLK GV N+L H+ Sbjct: 175 MIKELLDTRIRPAVQDDGGDIIFMEFTNGIVKLKLSGACEGCPSSMYTLKQGVENMLMHY 234 Query: 180 VPEVKDIRTV 189 +PEV+ + V Sbjct: 235 IPEVEGVEQV 244 >gi|42562675|ref|NP_175550.2| NFU5; ATP binding / structural molecule [Arabidopsis thaliana] gi|75169527|sp|Q9C8J2|NIFU5_ARATH RecName: Full=NifU-like protein 5, mitochondrial; Short=AtNfu-I; Short=AtNfu5; Flags: Precursor gi|12325368|gb|AAG52627.1|AC024261_14 unknown protein; 90320-88994 [Arabidopsis thaliana] gi|28207824|emb|CAD55562.1| NFU5 protein [Arabidopsis thaliana] gi|105829764|gb|ABF74703.1| At1g51390 [Arabidopsis thaliana] gi|110741134|dbj|BAE98660.1| hypothetical protein [Arabidopsis thaliana] gi|332194540|gb|AEE32661.1| NifU-like protein 5 [Arabidopsis thaliana] Length = 275 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 85/190 (44%), Positives = 120/190 (63%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP++L F PG+ V+ G+ F N++ A SPLA IF+I G+ V++G DF Sbjct: 75 MFIQTQSTPNPSSLMFSPGKPVMEIGSADFPNSRSAMSSPLAKAIFAIDGVVRVFYGSDF 134 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D W+ L+P + ++M+ + SG P+ + K + E DS V Sbjct: 135 VTVTKSDDVTWDILKPDIFAVVMDFYSSGQPLFLDSQATAAKDTAIH-----EDDSETVA 189 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RP+V DGGDI + G+ GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 190 MIKELLETRIRPSVQDDGGDIEYCGFDTETGIVKLRMQGACSGCPSSSVTLKSGIENMLM 249 Query: 178 HFVPEVKDIR 187 H+V EVK + Sbjct: 250 HYVSEVKGVE 259 >gi|66808847|ref|XP_638146.1| NIF system FeS cluster assembly domain-containing protein [Dictyostelium discoideum AX4] gi|60466582|gb|EAL64634.1| NIF system FeS cluster assembly domain-containing protein [Dictyostelium discoideum AX4] Length = 314 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 81/185 (43%), Positives = 121/185 (65%), Gaps = 6/185 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAI-HFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQTE TPNP +LKFIPG VL EG I FS+ K ++ SPLA+ +F + G+ V+F D Sbjct: 98 IFIQTETTPNPDSLKFIPGVQVLEEGQIIDFSDFKTSQQSPLANNLFKLDGVNRVFFSSD 157 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FI+V K +++W L+P + G I++ + SG PI+ + LG++ D M + D VV Sbjct: 158 FISVNKYPEHEWSILKPQIYGTIIDFYHSGLPILSDPSLGNINADTM----ILPEDDEVV 213 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+++ R+RP V DGG+I + G++DGIV + ++G CS C S+ TLK G+ +L H Sbjct: 214 AMIKELIETRIRPTVLEDGGNIKYMGFKDGIVMVQLQGTCSSCSSSQATLKGGIERMLMH 273 Query: 179 FVPEV 183 ++ EV Sbjct: 274 WISEV 278 >gi|213512278|ref|NP_001134266.1| NFU1 iron-sulfur cluster scaffold homolog [Salmo salar] gi|209731958|gb|ACI66848.1| NFU1 iron-sulfur cluster scaffold homolog [Salmo salar] Length = 263 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 84/191 (43%), Positives = 118/191 (61%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 + IQT+DTPNP +LKFIPG+ VL G + F + AE S LA +F I G+ SV++G DF Sbjct: 59 LSIQTQDTPNPRSLKFIPGKPVLGVGTLDFPSPSSAECSSLARDLFGIEGVKSVFYGPDF 118 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K D +W ++ + I + F SGDPI G+ + E D +V Sbjct: 119 ITVTKADDDVEWTDIKHHAMDAITKFFDSGDPI--TTGVTHHE------SSHSEDDDEIV 170 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++FKG+ +G V L + G+C+GCPS++ TLK G+ N+L Sbjct: 171 SMIKELLDTRIRPTVMEDGGDVIFKGFENGTVKLKLVGSCTGCPSSTVTLKNGIQNMLQF 230 Query: 179 FVPEVKDIRTV 189 ++PEV D+ V Sbjct: 231 YIPEVDDVEQV 241 >gi|269959159|ref|YP_003328948.1| NifU domain containing protein [Anaplasma centrale str. Israel] gi|269848990|gb|ACZ49634.1| NifU domain containing protein [Anaplasma centrale str. Israel] Length = 188 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 88/196 (44%), Positives = 129/196 (65%), Gaps = 15/196 (7%) Query: 1 MFIQTEDTPNPATLKFI-PGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ E+TPNP L+F+ VE + FS+A A S LA +F I G++ V+FG D Sbjct: 1 MFIQIENTPNPDALRFLLSADAGNVESGVEFSDADAARSSALARLLFDIQGVSKVFFGGD 60 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFIS-----GDPIIHNGGLGDMKLDDMGSGDFIES 113 FI+V K DW+ LRP +L ++M ++S P+ + G+ + F E Sbjct: 61 FISVTKLPHADWDTLRPEIL-VVMTDYLSLRGADATPLPAHEDGGEQEF-------FDEV 112 Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 D+ VV+R+KE++++ VRPAVA+DGGDI F+GY++G+VF+ +RGACSGCPSA+ TLK GV Sbjct: 113 DTEVVKRVKELIEHYVRPAVAQDGGDIKFRGYKEGVVFVHLRGACSGCPSAAVTLKDGVY 172 Query: 174 NILNHFVPEVKDIRTV 189 +L+++VPEVK + +V Sbjct: 173 GMLSYYVPEVKAVESV 188 >gi|254995338|ref|ZP_05277528.1| hypothetical protein AmarM_05319 [Anaplasma marginale str. Mississippi] gi|255003523|ref|ZP_05278487.1| hypothetical protein AmarPR_04754 [Anaplasma marginale str. Puerto Rico] gi|255004646|ref|ZP_05279447.1| hypothetical protein AmarV_05119 [Anaplasma marginale str. Virginia] Length = 189 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 86/194 (44%), Positives = 130/194 (67%), Gaps = 10/194 (5%) Query: 1 MFIQTEDTPNPATLKFI-PGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ E TPNP L+F+ ++ + I FS+A A+ S LA +F I G++ V+FG D Sbjct: 1 MFIQIEVTPNPDALRFLLSAEIGAIGSGIEFSDATTAQGSTLARLLFEIQGVSKVFFGGD 60 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNG--GLGDMKLDDMGSGDFIES-DS 115 F++V K DW+ LRP +L ++ ++F +HN ++ +F ++ DS Sbjct: 61 FVSVTKLPDADWDTLRPEILVVMTDYFS-----LHNAYSDAAPQAHEESDEREFFDTKDS 115 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 VVQR+KE++++ VRPAVA+DGGDI F+GY++G+VF+ +RGACSGCPSA+ TLK GV + Sbjct: 116 EVVQRVKELIEHYVRPAVAQDGGDIKFRGYKEGVVFVHLRGACSGCPSAAVTLKDGVYGM 175 Query: 176 LNHFVPEVKDIRTV 189 L+++VPEVK + +V Sbjct: 176 LSYYVPEVKAVESV 189 >gi|145507614|ref|XP_001439762.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124406957|emb|CAK72365.1| unnamed protein product [Paramecium tetraurelia] Length = 207 Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 82/193 (42%), Positives = 122/193 (63%), Gaps = 11/193 (5%) Query: 1 MFIQTEDTPNPATLKFIP-GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQ + TPNP LKFIP G+ V++ G FS +EA+ SPLA ++F I G+ V++G D Sbjct: 10 LFIQAKPTPNPNFLKFIPDGKQVMLNGTYDFSRPREAKCSPLAQKLFMIDGVNRVFYGKD 69 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD---FIESDS 115 +I++ K ++ WE L+P + IMEH+ + G + +D E DS Sbjct: 70 YISISKNEESKWEELKPQIFEQIMEHY----QLDAEGKEKQLIIDGYSENQDTQIKEEDS 125 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVA 173 +Q IKE++D R+RP V DGGDIVF+ + ++GIV L M+G+C+GCPS+S TLK G+ Sbjct: 126 EAIQLIKEIIDTRIRPTVQEDGGDIVFRDFDEQNGIVHLYMKGSCAGCPSSSITLKNGIE 185 Query: 174 NILNHFVPEVKDI 186 +L H+V EVK++ Sbjct: 186 RMLCHYVAEVKEV 198 >gi|56417173|ref|YP_154247.1| hypothetical protein AM1146 [Anaplasma marginale str. St. Maries] gi|222475537|ref|YP_002563954.1| hypothetical protein AMF_868 [Anaplasma marginale str. Florida] gi|56388405|gb|AAV86992.1| hypothetical protein AM1146 [Anaplasma marginale str. St. Maries] gi|222419675|gb|ACM49698.1| Conserved hypothetical protein [Anaplasma marginale str. Florida] Length = 194 Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 86/194 (44%), Positives = 130/194 (67%), Gaps = 10/194 (5%) Query: 1 MFIQTEDTPNPATLKFI-PGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ E TPNP L+F+ ++ + I FS+A A+ S LA +F I G++ V+FG D Sbjct: 6 MFIQIEVTPNPDALRFLLSAEIGAIGSGIEFSDATTAQGSTLARLLFEIQGVSKVFFGGD 65 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNG--GLGDMKLDDMGSGDFIES-DS 115 F++V K DW+ LRP +L ++ ++F +HN ++ +F ++ DS Sbjct: 66 FVSVTKLPDADWDTLRPEILVVMTDYFS-----LHNAYSDAAPQAHEESDEREFFDTKDS 120 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 VVQR+KE++++ VRPAVA+DGGDI F+GY++G+VF+ +RGACSGCPSA+ TLK GV + Sbjct: 121 EVVQRVKELIEHYVRPAVAQDGGDIKFRGYKEGVVFVHLRGACSGCPSAAVTLKDGVYGM 180 Query: 176 LNHFVPEVKDIRTV 189 L+++VPEVK + +V Sbjct: 181 LSYYVPEVKAVESV 194 >gi|225707504|gb|ACO09598.1| HIRA-interacting protein 5 [Osmerus mordax] Length = 263 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 83/191 (43%), Positives = 117/191 (61%), Gaps = 11/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 + IQT+DTPNP +LKF+PG+ VL G + F + AE S LA +F I G+ SV+FG DF Sbjct: 60 LSIQTQDTPNPRSLKFLPGKPVLGTGTLDFPTPQNAECSSLAKDLFEIEGVKSVFFGPDF 119 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K D +W +++ + I + F SG PI G+ + D +V Sbjct: 120 ITVTKADDDVEWTNIKRHAVEAITKFFDSGAPI--TTGVSHHESSH-------SEDDEIV 170 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++FKG+ DG V L + G+C+GCPS+S TL+ G+ N+L Sbjct: 171 SIIKELLDTRIRPTVQEDGGDVIFKGFEDGTVKLKLVGSCTGCPSSSVTLRNGIQNMLQF 230 Query: 179 FVPEVKDIRTV 189 ++PEV D+ V Sbjct: 231 YIPEVDDVEQV 241 >gi|193599106|ref|XP_001949519.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like [Acyrthosiphon pisum] Length = 254 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 87/193 (45%), Positives = 120/193 (62%), Gaps = 12/193 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP ++KF+PG VL +G + F NA A SPLA +F I G+ SV+FG D Sbjct: 43 MFIQTQDTPNPNSVKFLPGVQVLEKGHTMDFPNATAAYCSPLAKVLFRIEGVKSVFFGSD 102 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGG-LGDMKLDDMGSGDFIESDSA 116 +IT+ K D +W L+P + IM+ F SG PI+ + D ++ E D+ Sbjct: 103 YITLTKTDDDIEWMVLKPEIYATIMDFFASGLPILTDAKPTSDTQIH--------EDDNE 154 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V IKE+LD+R+RP V DGGDI+F GY GIV L ++G+C+ CPS+ TLK GV +L Sbjct: 155 TVMMIKELLDSRIRPTVQEDGGDILFIGYDAGIVKLKLQGSCTSCPSSVVTLKGGVQYML 214 Query: 177 NHFVPEVKDIRTV 189 ++PEV + V Sbjct: 215 QFYIPEVIAVEQV 227 >gi|297847512|ref|XP_002891637.1| hypothetical protein ARALYDRAFT_892107 [Arabidopsis lyrata subsp. lyrata] gi|297337479|gb|EFH67896.1| hypothetical protein ARALYDRAFT_892107 [Arabidopsis lyrata subsp. lyrata] Length = 274 Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 85/190 (44%), Positives = 119/190 (62%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFI+T+ TPNP++L F PG+ V+ G+ F N++ A SPLA IF+I G+ V+FG DF Sbjct: 74 MFIETQSTPNPSSLMFNPGKPVMDIGSADFPNSRSAMGSPLAKAIFAIDGVVRVFFGSDF 133 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D W+ L+P + ++M+ + SG P+ + K E DS V Sbjct: 134 VTVTKSDDVTWDILKPDIFAVVMDFYSSGQPLFLDSQATAAK-----DTAIHEDDSETVA 188 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RP+V DGGDI + G+ GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 189 MIKELLETRIRPSVQDDGGDIEYCGFDTETGIVKLRMQGACSGCPSSSVTLKSGIENMLM 248 Query: 178 HFVPEVKDIR 187 H+V EVK + Sbjct: 249 HYVSEVKGVE 258 >gi|307189950|gb|EFN74186.1| NFU1 iron-sulfur cluster scaffold-like protein, mitochondrial [Camponotus floridanus] Length = 289 Score = 160 bits (405), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 85/186 (45%), Positives = 119/186 (63%), Gaps = 12/186 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKFIPG VL EG F +AK+A S LA +F I G+ +++FG D Sbjct: 81 MFIQTQDTPNPNSLKFIPGVPVLGEGCTKDFPSAKDAYCSSLAKMLFRIEGVKAIFFGPD 140 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 FITV K + +W+ L+P + IM+ F SG PI++ D + D D + Sbjct: 141 FITVTKLDEDVEWKLLKPEIFATIMDFFASGLPIMNETS--QPATDTQINAD----DDEI 194 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 VQ IKE+L+ R+RP V DGGDI G+ +GIV L M+G+C+ CPS++ TL+ GV N++ Sbjct: 195 VQMIKELLETRIRPTVQEDGGDI---GFEEGIVKLKMQGSCTNCPSSAVTLRNGVQNMMR 251 Query: 178 HFVPEV 183 ++PEV Sbjct: 252 FYIPEV 257 >gi|239946652|ref|ZP_04698405.1| type Fe-S cluster assembly protein NFU [Rickettsia endosymbiont of Ixodes scapularis] gi|241563470|ref|XP_002401717.1| conserved hypothetical protein [Ixodes scapularis] gi|215501909|gb|EEC11403.1| conserved hypothetical protein [Ixodes scapularis] gi|239920928|gb|EER20952.1| type Fe-S cluster assembly protein NFU [Rickettsia endosymbiont of Ixodes scapularis] Length = 190 Score = 160 bits (405), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 81/184 (44%), Positives = 122/184 (66%), Gaps = 14/184 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTEDTPNP +KF PGQ ++ + + FS E + S LA +F I + SV+FG D Sbjct: 1 MFIQTEDTPNPDAIKFFPGQEIISDQPVFFSELAEVKGRSKLAESLFHINNVKSVFFGSD 60 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH---NGGLGDMKLDDMGSGDFIESDS 115 FITV K + +W+ ++P +L +IM+HF++G P+ G + LD + S Sbjct: 61 FITVTKQAEGNWQVIKPEILMVIMDHFVAGFPVFEESTKAGNVNHSLDGL---------S 111 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 + ++I E+++ RVRP+VA+DGGDI++KG+ +GIV L++RGAC GCPS++ TLK G+ ++ Sbjct: 112 EIEKQIVEIIETRVRPSVAQDGGDIIYKGFENGIVKLALRGACLGCPSSTITLKNGIESM 171 Query: 176 LNHF 179 L HF Sbjct: 172 LKHF 175 >gi|145505407|ref|XP_001438670.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124405842|emb|CAK71273.1| unnamed protein product [Paramecium tetraurelia] Length = 207 Score = 160 bits (405), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 82/193 (42%), Positives = 124/193 (64%), Gaps = 11/193 (5%) Query: 1 MFIQTEDTPNPATLKFIPG-QVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQ + TPNP LKFIPG + V++ G F+ +EA+ SPLA ++F I G+ V++G D Sbjct: 10 LFIQAKPTPNPNFLKFIPGGKQVMLNGTYDFTRPREAKCSPLAQKLFLIDGVTRVFYGKD 69 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLD---DMGSGDFIESDS 115 +I++ K ++ WE ++P + IMEH+ + +G + +D + E DS Sbjct: 70 YISIAKKEESRWEEIKPQIFEHIMEHY----QLDSDGQEKKLIIDGYQENQDTQINEDDS 125 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVA 173 VVQ IKE++D R+RP V DGGDIVF+ + + GIV L M+G+C+GCPS+S TLK G+ Sbjct: 126 EVVQLIKEIIDTRIRPTVQEDGGDIVFRDFDEKSGIVQLYMKGSCAGCPSSSVTLKNGIE 185 Query: 174 NILNHFVPEVKDI 186 +L H+V EVK++ Sbjct: 186 RMLCHYVAEVKEV 198 >gi|303274691|ref|XP_003056661.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461013|gb|EEH58306.1| predicted protein [Micromonas pusilla CCMP1545] Length = 190 Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 79/175 (45%), Positives = 122/175 (69%), Gaps = 9/175 (5%) Query: 16 FIPGQVVLVEGA-IHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKDQ-YDWEHL 73 F+PG+ V + ++F+ +EA SPLA ++F+I G+ SV+FG D++TV K++ ++W L Sbjct: 2 FMPGKPVNPDAPPLNFATPREAMASPLAKKLFAIDGVVSVFFGADYVTVTKNETHEWGVL 61 Query: 74 RPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAV 133 +P V +M+H+ SGDP++ + D +L G+ + D +V IKE+L+ R+RPAV Sbjct: 62 KPEVFAAVMDHYASGDPLVSD----DAELVAAGTA-IADDDDEIVAMIKELLETRIRPAV 116 Query: 134 ARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 A DGGDIV+KG+ + G+V + MRGAC GCPS+S TLK G+ N+L H+VPEVK++ Sbjct: 117 AEDGGDIVYKGWDESTGVVTVQMRGACDGCPSSSVTLKSGIENMLRHYVPEVKEV 171 >gi|73667413|ref|YP_303429.1| nitrogen-fixing NifU, C-terminal [Ehrlichia canis str. Jake] gi|72394554|gb|AAZ68831.1| Nitrogen-fixing NifU, C-terminal [Ehrlichia canis str. Jake] Length = 186 Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 87/193 (45%), Positives = 130/193 (67%), Gaps = 12/193 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQ E+TPNP TLKF+PG V F++ AE SPLA+ +F + + V+FG DF Sbjct: 1 MFIQIEETPNPNTLKFMPGVPVNNGKVSEFADNIAAESSPLAAALFKVEHVKGVFFGGDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLD---DMGSGDFIESDSA 116 +++ K D+ +W+ L+P VL +IME F++ +P GD D + F E D Sbjct: 61 VSITKSDEIEWDVLKPEVLTVIME-FLTLNP-------GDSTEDFNEEETDEFFDEKDVE 112 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +V +IKE++++ V+PAV +DGGDI FKGY +GIVF+ +RGACSGCPSAS TLK G+ N+L Sbjct: 113 MVDKIKELINDYVKPAVMQDGGDIKFKGYSNGIVFVKLRGACSGCPSASITLKEGIYNML 172 Query: 177 NHFVPEVKDIRTV 189 ++++P+++ + +V Sbjct: 173 SYYIPDIQGVESV 185 >gi|189200054|ref|XP_001936364.1| HIRA-interacting protein 5 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983463|gb|EDU48951.1| HIRA-interacting protein 5 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 312 Score = 160 bits (404), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 88/205 (42%), Positives = 123/205 (60%), Gaps = 19/205 (9%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 MFIQTE TPN LKF P Q VL E + + N + SPLA+++ +I GI Sbjct: 70 MFIQTEPTPNADALKFNPNQRVLPENISSPFLEYLNPRSTLAPPHPSPLAAQLMNIDGIT 129 Query: 53 SVYFGYDFITVGKDQYD-WEHLRPPVLGMIMEHFISGDPIIHN-------GGLGDMKLDD 104 SV+FG D+ITV KD W H++P V +I E+ SG PI++ G G + D Sbjct: 130 SVFFGADYITVTKDSSTPWAHIKPEVFALINEYMTSGQPIVNTVAAKAGEQGQGGQENDS 189 Query: 105 MGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSA 164 + + E+D VV IKE+L+ RVRPA+ DGGDI F+G+ DG V+L +RGAC C S+ Sbjct: 190 LA---YDENDDEVVGMIKELLETRVRPAIQEDGGDIEFRGFNDGQVWLKLRGACRTCDSS 246 Query: 165 SETLKYGVANILNHFVPEVKDIRTV 189 + TLK G+ ++L H++ EVK ++ V Sbjct: 247 TVTLKNGIESMLMHYIEEVKGVQQV 271 >gi|297182169|gb|ADI18341.1| thioredoxin-like proteins and domains [uncultured Rhodobacterales bacterium HF4000_03E16] Length = 146 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 79/151 (52%), Positives = 103/151 (68%), Gaps = 6/151 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A SPLA R+F++ G+ V+FG+DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEMGTADFPSAEGASASPLAERLFAVNGVEGVFFGHDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + DW+HL+P +LG IMEHF SG P++ G G + D +V Sbjct: 61 VTVTKAEAMDWDHLKPSLLGAIMEHFQSGAPVMAGDAAG-----PSGHAEHSGEDGEIVS 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIV 150 +IKE+LD+RVRPAVA+DGGDI F G+ G+V Sbjct: 116 QIKELLDSRVRPAVAQDGGDITFHGFERGVV 146 >gi|242011992|ref|XP_002426727.1| HIRA-interacting protein, putative [Pediculus humanus corporis] gi|212510898|gb|EEB13989.1| HIRA-interacting protein, putative [Pediculus humanus corporis] Length = 216 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 82/192 (42%), Positives = 115/192 (59%), Gaps = 20/192 (10%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKFIPG VL G F NA A SPL +F I G+ SV+FG D Sbjct: 14 MFIQTQDTPNPNSLKFIPGVKVLENGKTKDFPNAASALCSPLGKSLFRINGVKSVFFGPD 73 Query: 60 FITVGKDQYD--WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 FIT+ K D W+ + P + IM+ F SG PI+ ++ DF++ + Sbjct: 74 FITITKQDEDVSWKLINPEIFATIMDFFSSGLPILT---------ENESKSDFVKEN--- 121 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 E+L+ R+RP V DGGD+VFKG+ +GIV L + G+C+ CPS+ TLK G+ N+L Sbjct: 122 -----ELLETRIRPTVQEDGGDVVFKGFENGIVKLKLLGSCTTCPSSIVTLKNGIQNMLQ 176 Query: 178 HFVPEVKDIRTV 189 ++PEV ++ + Sbjct: 177 FYIPEVLEVEQI 188 >gi|238650984|ref|YP_002916840.1| hypothetical protein RPR_06295 [Rickettsia peacockii str. Rustic] gi|238625082|gb|ACR47788.1| hypothetical protein RPR_06295 [Rickettsia peacockii str. Rustic] Length = 190 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 79/181 (43%), Positives = 122/181 (67%), Gaps = 8/181 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTEDTPNP + F PGQ + + + FS E + S LA +F I + SV+FG D Sbjct: 1 MFIQTEDTPNPDAITFFPGQEISSDQPVFFSELAEVKGRSKLAESLFYINNVKSVFFGSD 60 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K + +W+ ++P +L +IM+HF+SG P+ + K D++ ++ S + Sbjct: 61 FITVTKQAEGNWQVIKPEILMVIMDHFVSGLPVFEE----NTKADNVNHN--LDGLSEIE 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I E+++ RVRP+VA+DGGDI++KG+ +G+V L++RGAC GCPS++ TLK G+ ++L H Sbjct: 115 KQIVEIIETRVRPSVAQDGGDIIYKGFENGVVKLALRGACLGCPSSTITLKNGIESMLKH 174 Query: 179 F 179 F Sbjct: 175 F 175 >gi|157804045|ref|YP_001492594.1| NifU-like domain-containing protein [Rickettsia canadensis str. McKiel] gi|157785308|gb|ABV73809.1| NifU-like domain [Rickettsia canadensis str. McKiel] Length = 189 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 86/191 (45%), Positives = 127/191 (66%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTEDTPNP +KF PGQ + EG I FS E + S LA +F I + SV+FG D Sbjct: 1 MFIQTEDTPNPDAIKFFPGQEINSEGPIFFSELAEVKGKSKLAESLFHINNVKSVFFGSD 60 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K + +W+ ++P +L +IM+HF+SG P+ K D++ ++ + Sbjct: 61 FITVTKQPESNWQVIKPEILMVIMDHFVSGFPVFEES----TKADNVQHN--LDGLLEIE 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I E+++ RVRP+VA+DGGDI++K + +G+V L +RGAC GCPS++ TLK G+ ++L H Sbjct: 115 KQIIEIIETRVRPSVAQDGGDIIYKCFENGVVKLVLRGACLGCPSSTITLKNGIESMLKH 174 Query: 179 FVPEVKDIRTV 189 FVPEV+ + V Sbjct: 175 FVPEVQAVEAV 185 >gi|15892941|ref|NP_360655.1| hypothetical protein RC1018 [Rickettsia conorii str. Malish 7] gi|15620134|gb|AAL03556.1| unknown [Rickettsia conorii str. Malish 7] Length = 190 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 79/181 (43%), Positives = 122/181 (67%), Gaps = 8/181 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTEDTPNP + F PGQ + + + FS E + S LA +F I + SV+FG D Sbjct: 1 MFIQTEDTPNPDAITFFPGQEISSDQPVFFSELAEVKGRSKLAESLFYINNVKSVFFGSD 60 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K + +W+ ++P +L +IM+HF+SG P+ + K D++ ++ S + Sbjct: 61 FITVTKQAEGNWQVIKPEILMVIMDHFVSGFPVFEE----NTKADNVNHN--LDGLSEIE 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I E+++ RVRP+VA+DGGDI++KG+ +G+V L++RGAC GCPS++ TLK G+ ++L H Sbjct: 115 KQIVEIIETRVRPSVAQDGGDIIYKGFENGVVKLALRGACLGCPSSTITLKNGIESMLKH 174 Query: 179 F 179 F Sbjct: 175 F 175 >gi|34581359|ref|ZP_00142839.1| hypothetical protein [Rickettsia sibirica 246] gi|229587020|ref|YP_002845521.1| NifU-like protein [Rickettsia africae ESF-5] gi|28262744|gb|EAA26248.1| unknown [Rickettsia sibirica 246] gi|228022070|gb|ACP53778.1| NifU-like protein [Rickettsia africae ESF-5] Length = 190 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 79/181 (43%), Positives = 122/181 (67%), Gaps = 8/181 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTEDTPNP + F PGQ + + + FS E + S LA +F I + SV+FG D Sbjct: 1 MFIQTEDTPNPDAITFFPGQEISSDQPVFFSELAEVKGRSKLAESLFYINNVKSVFFGSD 60 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K + +W+ ++P +L +IM+HF+SG P+ + K D++ ++ S + Sbjct: 61 FITVTKQAEGNWQVIKPEILMVIMDHFVSGFPVFEE----NTKADNVNHN--LDGLSEIE 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I E+++ RVRP+VA+DGGDI++KG+ +G+V L++RGAC GCPS++ TLK G+ ++L H Sbjct: 115 KQIVEIIETRVRPSVAQDGGDIIYKGFENGVVKLALRGACLGCPSSTITLKNGIESMLKH 174 Query: 179 F 179 F Sbjct: 175 F 175 >gi|168061090|ref|XP_001782524.1| predicted protein [Physcomitrella patens subsp. patens] gi|162666009|gb|EDQ52676.1| predicted protein [Physcomitrella patens subsp. patens] Length = 212 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 84/193 (43%), Positives = 118/193 (61%), Gaps = 11/193 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQ E TPNP +L F PG+ V+ G+ F N++ A SPLA IF + G+ V+FG DF Sbjct: 14 MFIQVESTPNPQSLMFYPGKPVMEVGSSDFPNSRAAMASPLAKSIFIVDGVVRVFFGADF 73 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI-ESDSAVV 118 +TV K + W+ L+P + IM+ + + P+ ++ S I E D V Sbjct: 74 VTVTKSEDVSWDILKPEIFAAIMDFYATKQPLFYD-------TQSQASDTAIHEDDDETV 126 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+L+ R+RPAV DGGDI ++G+ GIV L M+GACSGCPS++ TLK G+ N+L Sbjct: 127 AMIKELLETRIRPAVQDDGGDIEYRGFDPESGIVSLKMQGACSGCPSSAVTLKSGIENML 186 Query: 177 NHFVPEVKDIRTV 189 H+V EVK ++ V Sbjct: 187 MHYVSEVKGVQEV 199 >gi|330922033|ref|XP_003299669.1| hypothetical protein PTT_10711 [Pyrenophora teres f. teres 0-1] gi|311326592|gb|EFQ92266.1| hypothetical protein PTT_10711 [Pyrenophora teres f. teres 0-1] Length = 243 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 86/205 (41%), Positives = 122/205 (59%), Gaps = 19/205 (9%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 MFIQTE TPN LKF P Q VL E + + N + SPLA+++ +I G+ Sbjct: 1 MFIQTEPTPNADALKFNPNQRVLPENISSPFLEYLNPRSTLAPPHPSPLAAQLMNIDGVT 60 Query: 53 SVYFGYDFITVGKDQYD-WEHLRPPVLGMIMEHFISGDPIIHN-------GGLGDMKLDD 104 SV+FG D+ITV KD W H++P V +I E+ SG PI++ G G + D Sbjct: 61 SVFFGADYITVTKDSSTPWAHVKPEVFALINEYMTSGQPIVNTVAAKAGEQGQGGQENDS 120 Query: 105 MGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSA 164 + + E+D V+ IKE+L+ RVRPA+ DGGDI F+G+ DG V L +RGAC C S+ Sbjct: 121 LA---YDENDDEVIGMIKELLETRVRPAIQEDGGDIEFRGFNDGQVLLKLRGACRTCDSS 177 Query: 165 SETLKYGVANILNHFVPEVKDIRTV 189 + TLK G+ ++L H++ EVK ++ V Sbjct: 178 TVTLKNGIESMLMHYIEEVKGVQQV 202 >gi|157964815|ref|YP_001499639.1| NifU-like protein [Rickettsia massiliae MTU5] gi|157844591|gb|ABV85092.1| NifU-like protein [Rickettsia massiliae MTU5] Length = 191 Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 78/181 (43%), Positives = 121/181 (66%), Gaps = 8/181 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQT DTPNP + F PGQ + + + FS E + S LA +F I + SV+FG D Sbjct: 2 MFIQTADTPNPDAITFFPGQEISSDQPVFFSELAEVQGRSKLAESLFHINNVKSVFFGSD 61 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K + +W+ ++P +L +IM+HF+SG P+ + K D++ ++ S + Sbjct: 62 FITVTKQAEGNWQVIKPEILMVIMDHFVSGFPVFEE----NTKADNVNHN--LDGLSEIE 115 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I E+++ RVRP+VA+DGGDI++KG+ +G+V L++RGAC GCPS++ TLK G+ ++L H Sbjct: 116 KQIVEIIETRVRPSVAQDGGDIIYKGFENGVVKLALRGACLGCPSSTITLKNGIESMLKH 175 Query: 179 F 179 F Sbjct: 176 F 176 >gi|212540194|ref|XP_002150252.1| NifU-related protein [Penicillium marneffei ATCC 18224] gi|210067551|gb|EEA21643.1| NifU-related protein [Penicillium marneffei ATCC 18224] Length = 321 Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 87/206 (42%), Positives = 124/206 (60%), Gaps = 20/206 (9%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHF-------SNAKEAEISPLASRIFSIPGIA 52 +FIQTE TPNP LKF+P VL E + F S SPLA+++ +I GI+ Sbjct: 81 IFIQTESTPNPDALKFLPNNRVLPENFSTPFLEYLSPRSTLAPPHPSPLAAKLLNIEGIS 140 Query: 53 SVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPII----HNGGLGDMKL----D 103 SV++G DFITV K +W H++P V +I E SG+PI+ H G D + D Sbjct: 141 SVFYGPDFITVTKSSDVNWAHVKPEVFSLITEVVTSGEPIVNTVEHTSGAQDAQEGGGED 200 Query: 104 DMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPS 163 +G + E D VV IKE+L+ R+RPA+ DGGDI F+G+ +GIV L +RGAC C S Sbjct: 201 TLG---YNEEDDEVVGMIKELLETRIRPAIQEDGGDIEFRGFENGIVLLKLRGACRTCDS 257 Query: 164 ASETLKYGVANILNHFVPEVKDIRTV 189 ++ TLK G+ ++L H++ EV+ ++ V Sbjct: 258 STVTLKNGIESMLMHYIEEVQGVQQV 283 >gi|325303172|tpg|DAA34414.1| TPA_inf: NifU-like domain-containing protein [Amblyomma variegatum] Length = 217 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 111/174 (63%), Gaps = 5/174 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP LKF+P VL +G F N A+ SPLA +F + G+ +V+ G DF Sbjct: 46 MFIQTQDTPNPNCLKFLPNAKVLEQGTRDFPNIGSAKNSPLARHLFRVEGVKAVFLGPDF 105 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K D+ +W+ ++P + IM+ F +G P++ +G +D E DS V Sbjct: 106 ITVTKVDDETEWKVIKPHIFAAIMDFFTTGLPVLDDGSASTQVSEDTQPR---EGDSETV 162 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 IKE+++ R+RP V DGGDI++ G+ DG+V L ++G+C+GCPS+S TLK G+ Sbjct: 163 LAIKELIETRIRPTVQEDGGDILYMGFEDGVVKLKLQGSCTGCPSSSVTLKAGI 216 >gi|225711062|gb|ACO11377.1| NFU1 iron-sulfur cluster scaffold homolog [Caligus rogercresseyi] Length = 237 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 79/194 (40%), Positives = 117/194 (60%), Gaps = 11/194 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG--AIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 M+I+T++TPNP +LKF+PG VL + F A SPLA +F + G+ V+FG Sbjct: 27 MYIRTQETPNPQSLKFLPGVRVLETAGSTLDFPTPSAAYCSPLAKLLFRVDGVKGVFFGQ 86 Query: 59 DFITVGKDQ---YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDS 115 DFIT+ K++ +W+ ++P V +M+ F SG PI++ + E D Sbjct: 87 DFITITKEEDSEVEWKVIKPEVYATLMDFFASGLPIVNEDA------KPHSDTEIHEDDD 140 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE+LD+R+RP V DGGDI+F G+ DGIV L M+G+C+ CPS+ TLK GV N+ Sbjct: 141 DTVAMIKELLDSRIRPTVQEDGGDIIFMGFEDGIVKLKMQGSCTSCPSSIVTLKNGVQNM 200 Query: 176 LNHFVPEVKDIRTV 189 L ++PEV ++ + Sbjct: 201 LQFYIPEVIEVEQI 214 >gi|62202252|gb|AAH92870.1| Zgc:110319 [Danio rerio] gi|182890178|gb|AAI64833.1| Zgc:110319 [Danio rerio] Length = 256 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 78/191 (40%), Positives = 115/191 (60%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 + I T+DTPNP +LKF+PG+ VL G F + AE SPLA +F I GI SV++G DF Sbjct: 52 LSILTQDTPNPRSLKFLPGKPVLGSGTQDFPTSASAESSPLARDLFQISGIKSVFYGPDF 111 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K D +W ++ + +I + F G+ I + + E D +V Sbjct: 112 ITLTKTDDDVEWTDIKRHAIEVIRKFFEGGEAITTGAAHAESSV--------TEDDDEIV 163 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++FKG+ DG V L + G+C+GCPS++ TLK G+ N++ Sbjct: 164 SLIKELLDTRIRPTVQEDGGDVIFKGFEDGTVKLKLVGSCTGCPSSTVTLKNGIQNMMQF 223 Query: 179 FVPEVKDIRTV 189 ++PEV ++ V Sbjct: 224 YIPEVDNVEQV 234 >gi|225711844|gb|ACO11768.1| NFU1 iron-sulfur cluster scaffold homolog [Lepeophtheirus salmonis] Length = 238 Score = 157 bits (396), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 80/194 (41%), Positives = 117/194 (60%), Gaps = 11/194 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG--AIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 M+I+T++TPNP +LKF+PG VL I F A SPLA +F + G+ V+FG Sbjct: 29 MYIRTQETPNPQSLKFLPGVPVLETAGSTIDFPQPSAAFCSPLAKLLFRVEGVKGVFFGP 88 Query: 59 DFITVGKDQ---YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDS 115 DFIT+ K++ +W+ ++P + IM+ F SG PI++ + E D Sbjct: 89 DFITITKEEEVNAEWKLMKPLIYATIMDFFASGLPIVNEDA------KPHSDTEIHEDDD 142 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE+LD+R+RP V DGGDIVF G+ DG+V L M+G+C+ CPS+ TLK GV N+ Sbjct: 143 DTVAMIKELLDSRIRPTVQEDGGDIVFMGFDDGVVKLKMQGSCTSCPSSIVTLKNGVQNM 202 Query: 176 LNHFVPEVKDIRTV 189 L ++PEV ++ + Sbjct: 203 LQFYIPEVLEVEQI 216 >gi|213624625|gb|AAI71359.1| Zgc:110319 [Danio rerio] Length = 256 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 78/191 (40%), Positives = 115/191 (60%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 + I T+DTPNP +LKF+PG+ VL G F + AE SPLA +F I GI SV++G DF Sbjct: 52 LSILTQDTPNPRSLKFLPGKPVLGTGTQDFPTSASAESSPLARDLFQISGIKSVFYGPDF 111 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K D +W ++ + +I + F G+ I + + E D +V Sbjct: 112 ITLTKTDDDVEWTDIKRHAIEVIRKFFEGGEAITTGAAHAESSV--------TEDDDEIV 163 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++FKG+ DG V L + G+C+GCPS++ TLK G+ N++ Sbjct: 164 SLIKELLDTRIRPTVQEDGGDVIFKGFEDGTVKLKLVGSCTGCPSSTVTLKNGIQNMMQF 223 Query: 179 FVPEVKDIRTV 189 ++PEV ++ V Sbjct: 224 YIPEVDNVEQV 234 >gi|330799706|ref|XP_003287883.1| hypothetical protein DICPUDRAFT_20344 [Dictyostelium purpureum] gi|325082086|gb|EGC35580.1| hypothetical protein DICPUDRAFT_20344 [Dictyostelium purpureum] Length = 203 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 81/191 (42%), Positives = 119/191 (62%), Gaps = 7/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAI-HFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQTE TPNP +LKFIPG VL +G I F + K +++SPLA+ +F I G+ V+F D Sbjct: 4 IFIQTETTPNPDSLKFIPGVEVLSDGQIMDFPDFKSSQVSPLANSLFKIEGVNRVFFSSD 63 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FI+V K + DW L+P + G I++ + SG PI+ D+ D + DS VV Sbjct: 64 FISVNKYPEQDWAALKPEIYGAIIDFYNSGSPILSEHS-SDINTDTT----ILPEDSEVV 118 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+++ R+RP V DGG+I + G+ DGIV + ++G CS C S+ TLK G+ +L H Sbjct: 119 AMIKELIETRIRPTVLEDGGNIKYMGFADGIVLVQLQGTCSSCSSSQATLKGGIERMLMH 178 Query: 179 FVPEVKDIRTV 189 ++ EVK + + Sbjct: 179 WIAEVKGVVAI 189 >gi|324120927|ref|NP_001018093.2| NFU1 iron-sulfur cluster scaffold homolog [Danio rerio] gi|220678983|emb|CAX14770.1| novel protein similar to HIRA interacting protein 5 (hirip5, zgc:110319) [Danio rerio] Length = 256 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 78/191 (40%), Positives = 115/191 (60%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 + I T+DTPNP +LKF+PG+ VL G F + AE SPLA +F I GI SV++G DF Sbjct: 52 LSILTQDTPNPRSLKFLPGKPVLGTGTQDFPTSASAESSPLARDLFQISGIKSVFYGPDF 111 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K D +W ++ + +I + F G+ I + + E D +V Sbjct: 112 ITLTKTDDDVEWTDIKRHAIEVISKFFEGGEAITTGAAHAESSV--------TEDDDEIV 163 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++FKG+ DG V L + G+C+GCPS++ TLK G+ N++ Sbjct: 164 SLIKELLDTRIRPTVQEDGGDVIFKGFEDGTVKLKLVGSCTGCPSSTVTLKNGIQNMMQF 223 Query: 179 FVPEVKDIRTV 189 ++PEV ++ V Sbjct: 224 YIPEVDNVEQV 234 >gi|302409492|ref|XP_003002580.1| HIRA-interacting protein [Verticillium albo-atrum VaMs.102] gi|261358613|gb|EEY21041.1| HIRA-interacting protein [Verticillium albo-atrum VaMs.102] Length = 292 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 82/198 (41%), Positives = 118/198 (59%), Gaps = 9/198 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE TPNP LKF+P VL EG I + N + SPLA+++ +I G+ Sbjct: 66 IFIQTEPTPNPDALKFLPNHRVLPEGISVPYIEYLNPRATIAPPHPSPLAAQLLAIDGVT 125 Query: 53 SVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI 111 +V++G DFITV K +W H+R + +I E SG P++ + + S + Sbjct: 126 AVFYGADFITVTKAADANWAHVRAEIFALITEAITSGAPLVVVKEGAEAAPAEEDSLAYN 185 Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E DS VV IKE+L+ R+RPA+ DGGDI F+G+ DG+V L +RGAC C S++ TLK G Sbjct: 186 EDDSEVVGMIKELLETRIRPAIQEDGGDIEFRGFEDGVVLLKLRGACRTCDSSTVTLKNG 245 Query: 172 VANILNHFVPEVKDIRTV 189 + +L H++ EVK + V Sbjct: 246 IEGMLMHYIEEVKSVNQV 263 >gi|41351250|gb|AAH65889.1| Zgc:110319 protein [Danio rerio] Length = 255 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 78/191 (40%), Positives = 115/191 (60%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 + I T+DTPNP +LKF+PG+ VL G F + AE SPLA +F I GI SV++G DF Sbjct: 51 LSILTQDTPNPRSLKFLPGKPVLGTGTQDFPTSASAESSPLARDLFQISGIKSVFYGPDF 110 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K D +W ++ + +I + F G+ I + + E D +V Sbjct: 111 ITLTKTDDDVEWTDIKRHAIEVISKFFEGGEAITTGAAHAESSV--------TEDDDEIV 162 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++FKG+ DG V L + G+C+GCPS++ TLK G+ N++ Sbjct: 163 SLIKELLDTRIRPTVQEDGGDVIFKGFEDGTVKLKLVGSCTGCPSSTVTLKNGIQNMMQF 222 Query: 179 FVPEVKDIRTV 189 ++PEV ++ V Sbjct: 223 YIPEVDNVEQV 233 >gi|320170179|gb|EFW47078.1| TO42 [Capsaspora owczarzaki ATCC 30864] Length = 280 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 78/190 (41%), Positives = 116/190 (61%), Gaps = 10/190 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKF+PG V+ G F++++ A SPLA ++ I G+ V+F F Sbjct: 65 MFIQTQDTPNPNSLKFMPGVTVVDAGTYDFADSRAAATSPLARQLLRIQGVNRVFFAQKF 124 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I++ K D+ +W L+P + IM+ F SG P++ + ++ V Sbjct: 125 ISINKADEAEWPVLKPEIYATIMDFFASGLPVVEAPKTTEEA---------ATEENETVS 175 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+LD+R+RP V DGGDI FK + +G+V L + G+CS CPS+ TL GV+N+L H+ Sbjct: 176 MIKELLDSRIRPMVQEDGGDIEFKSFENGVVKLKLIGSCSTCPSSKATLYDGVSNMLMHY 235 Query: 180 VPEVKDIRTV 189 VPE++ I V Sbjct: 236 VPEIEKIEQV 245 >gi|148284929|ref|YP_001249019.1| hypothetical protein OTBS_1710 [Orientia tsutsugamushi str. Boryong] gi|189184851|ref|YP_001938636.1| thioredoxin-like protein [Orientia tsutsugamushi str. Ikeda] gi|146740368|emb|CAM80805.1| conserved hypothetical protein [Orientia tsutsugamushi str. Boryong] gi|189181622|dbj|BAG41402.1| thioredoxin-like protein [Orientia tsutsugamushi str. Ikeda] Length = 182 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 80/190 (42%), Positives = 122/190 (64%), Gaps = 9/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +LKF P Q + +HFS +E S LA ++FSI + V+FG DF Sbjct: 1 MFIQTQQTPNPNSLKFFPDQKISPGNPVHFSTREECTHSILARKLFSIENVKEVFFGEDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV K WE ++P +L M+M+HF++G P+ + + + ++ + S + + Sbjct: 61 ITVTKVSDGSWEVIKPEILTMLMDHFVAGLPVFES----EAEKKNIEQANL----SEIEK 112 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +I E+++ +VRPAVA DGGDI + ++DGIV L MRGAC GCPS++ TLK G+ ++L ++ Sbjct: 113 QIIEIINTKVRPAVAMDGGDIEYHSFKDGIVKLQMRGACVGCPSSTMTLKQGIESLLKYY 172 Query: 180 VPEVKDIRTV 189 +PEV + V Sbjct: 173 IPEVVSVEQV 182 >gi|170084143|ref|XP_001873295.1| predicted protein [Laccaria bicolor S238N-H82] gi|164650847|gb|EDR15087.1| predicted protein [Laccaria bicolor S238N-H82] Length = 212 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 82/195 (42%), Positives = 122/195 (62%), Gaps = 10/195 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPN +LKFI G V+ +G F + + A ISPLA R+ + G++ V++G DF Sbjct: 1 MFIQTETTPNEDSLKFILGVPVMGDGTAEFLDTRSALISPLAIRLMGVEGVSGVFYGPDF 60 Query: 61 ITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD--FIESDSAV 117 +TV KD ++ W ++P + +IME F SG + D + + G D +++DS Sbjct: 61 VTVSKDSEHRWAVVKPEIYSIIMEFFSSGQKLFRT----DEEREQAGPQDTRILDTDSET 116 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYR---DGIVFLSMRGACSGCPSASETLKYGVAN 174 V IKE+L+ RVRPA+ DGGDI F+G+ D +V + ++G+C GC S++ TLK G+ Sbjct: 117 VAMIKELLETRVRPAIMEDGGDIEFRGFDEEGDRLVKVKLKGSCRGCDSSTVTLKSGIER 176 Query: 175 ILNHFVPEVKDIRTV 189 +L H+VPEVK + V Sbjct: 177 MLMHYVPEVKGVEQV 191 >gi|67516331|ref|XP_658051.1| hypothetical protein AN0447.2 [Aspergillus nidulans FGSC A4] gi|40747390|gb|EAA66546.1| hypothetical protein AN0447.2 [Aspergillus nidulans FGSC A4] gi|259489306|tpe|CBF89467.1| TPA: NifU-related protein (AFU_orthologue; AFUA_1G04680) [Aspergillus nidulans FGSC A4] Length = 326 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 81/201 (40%), Positives = 120/201 (59%), Gaps = 12/201 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE----GAIHFSNAKEAEISP----LASRIFSIPGIA 52 +FIQTE TPNP LKFIP VL E + + + + P LA+ +F++ G+ Sbjct: 89 IFIQTESTPNPDALKFIPNHRVLPEDFPTSFLEYLSPRSTLAPPHPSTLAANLFNVEGVQ 148 Query: 53 SVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHN---GGLGDMKLDDMGSG 108 SV+FG DFITV K +W H++P V +I + SG+PI++ G K + S Sbjct: 149 SVFFGTDFITVTKASDTNWAHIKPEVFSLITQAVTSGEPIVNTVEKSGASGQKGGEEDSL 208 Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 + E D VV IKE+L+ R+RPA+ DGGDI F+G+ +GIV L +RGAC C S++ TL Sbjct: 209 SYNEEDDEVVSMIKELLETRIRPAIQEDGGDIEFRGFENGIVMLKLRGACRTCDSSTVTL 268 Query: 169 KYGVANILNHFVPEVKDIRTV 189 + G+ ++L H++ EV+ + V Sbjct: 269 RNGIESMLMHYIEEVQGVEQV 289 >gi|225680672|gb|EEH18956.1| HIRA-interacting protein [Paracoccidioides brasiliensis Pb03] Length = 317 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/200 (43%), Positives = 120/200 (60%), Gaps = 12/200 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHF-------SNAKEAEISPLASRIFSIPGIA 52 +FIQTE+TPN LKFIP VL E F S SPLAS++ ++ G++ Sbjct: 82 IFIQTENTPNADALKFIPNHSVLPENFPTTFLEYLSPRSTLAPPYPSPLASKLLNVDGVS 141 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPI--IHNGGLGDMKLDDMGSGD 109 +V++G DFIT+ K +W H++P V +I E +GDPI I G G K + S Sbjct: 142 AVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTAGDPIVTISEAGAGS-KAQEEDSLS 200 Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 + E D VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C S++ TLK Sbjct: 201 YNEDDDEVVGMIKELLETRIRPAIQEDGGDIEFRGFEDGIVNLKLRGACRTCDSSTVTLK 260 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ ++L H++ EVK + V Sbjct: 261 NGIESMLMHYIEEVKGVNQV 280 >gi|226292348|gb|EEH47768.1| HIRA interacting protein [Paracoccidioides brasiliensis Pb18] Length = 317 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 86/200 (43%), Positives = 120/200 (60%), Gaps = 12/200 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHF-------SNAKEAEISPLASRIFSIPGIA 52 +FIQTE+TPN LKFIP VL E F S SPLAS++ ++ G++ Sbjct: 82 IFIQTENTPNADALKFIPNHSVLPENFPTTFLEYLSPRSTLAPPYPSPLASKLLNVDGVS 141 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPI--IHNGGLGDMKLDDMGSGD 109 +V++G DFIT+ K +W H++P V +I E +GDPI I G G K + S Sbjct: 142 AVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTAGDPIVTISEAGAGS-KAQEEDSLS 200 Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 + E D VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C S++ TLK Sbjct: 201 YNEDDDEVVGMIKELLETRIRPAIQEDGGDIEFRGFEDGIVNLKLRGACRTCDSSTVTLK 260 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ ++L H++ EVK + V Sbjct: 261 NGIESMLMHYIEEVKGVNQV 280 >gi|321261141|ref|XP_003195290.1| iron homeostasis-related protein [Cryptococcus gattii WM276] gi|317461763|gb|ADV23503.1| Iron homeostasis-related protein, putative [Cryptococcus gattii WM276] Length = 309 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 91/193 (47%), Positives = 127/193 (65%), Gaps = 9/193 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPN A+LKFIPG V + GA H F + + A SPLA+R+ +I GI V+FG D Sbjct: 80 MFIQTETTPNEASLKFIPG-VQVTNGAAHEFLDLRSALQSPLATRLLTIDGITGVFFGPD 138 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+T K D Y W L+P V ++MEHF SG + G G+ + +D +++DS +V Sbjct: 139 FVTCSKDDSYSWSILKPEVFAVLMEHFSSGASLFKEGS-GESQAEDT---RILDTDSEIV 194 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+L+ RVRPA+ DGGDI ++G+ + GIV L ++G+C GC S+S TLK G+ +L Sbjct: 195 GMIKELLETRVRPAIMEDGGDIEYRGFDEVTGIVKLKLKGSCRGCSSSSVTLKNGIERML 254 Query: 177 NHFVPEVKDIRTV 189 H+VPEV+ + V Sbjct: 255 THYVPEVQSVEQV 267 >gi|210075172|ref|XP_500339.2| YALI0B00264p [Yarrowia lipolytica] gi|199425114|emb|CAG82553.2| YALI0B00264p [Yarrowia lipolytica] Length = 263 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 82/187 (43%), Positives = 114/187 (60%), Gaps = 10/187 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT TPN LKF+P +L EG + F++ +EA SPLA ++F + G+ SV FG D Sbjct: 46 MFIQTASTPNEDALKFLPSVQILPEGHTVEFTSGREAHSSPLAKKLFGVDGVRSVMFGSD 105 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K Q W L+P V ++ EH +G PI+ G +D D DS VV Sbjct: 106 FITVEKAQDTHWNTLKPEVFSILTEHITAGAPIVMEGTTA---AEDTAPCD---DDSEVV 159 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+++ R+RPA+ DGGDI F+G+ + G+V L + GAC C S++ TLK G+ ++L Sbjct: 160 SMIKELIETRIRPAIQEDGGDIAFRGFDEDTGVVHLKLLGACRSCDSSAVTLKNGIESML 219 Query: 177 NHFVPEV 183 H+V EV Sbjct: 220 MHYVEEV 226 >gi|301107396|ref|XP_002902780.1| iron-sulfur cluster scaffold protein Nfu-like protein [Phytophthora infestans T30-4] gi|262097898|gb|EEY55950.1| iron-sulfur cluster scaffold protein Nfu-like protein [Phytophthora infestans T30-4] Length = 217 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 80/194 (41%), Positives = 121/194 (62%), Gaps = 14/194 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE----GAIHFSNAKEAEISPLASRIFSIPGIASVYF 56 MFIQTE TPNP ++KF+PG+ VL E G +++E SPLA ++F I G+ V+F Sbjct: 1 MFIQTEPTPNPLSVKFLPGRSVLDERFTTGVDFTPSSEEVRRSPLAKKLFQIEGVTRVFF 60 Query: 57 GYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDS 115 G DFI+V K ++ DW+ L + IM+ F S + ++ + + + + D Sbjct: 61 GKDFISVTKTEEEDWDALNAEIFATIMDFFASDEQVMSDEPI-------VTDTTILPDDD 113 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVA 173 VV IKE+L+ R+RP+V DGGDI +KG+ + G V + + G+C+GCPS+S TLK+GV Sbjct: 114 EVVAMIKELLEQRIRPSVQDDGGDIFYKGFDEKTGTVSVQLAGSCAGCPSSSVTLKHGVE 173 Query: 174 NILNHFVPEVKDIR 187 N+L H++PEV+ I Sbjct: 174 NMLKHYIPEVRGIE 187 >gi|134114121|ref|XP_774308.1| hypothetical protein CNBG2890 [Cryptococcus neoformans var. neoformans B-3501A] gi|50256943|gb|EAL19661.1| hypothetical protein CNBG2890 [Cryptococcus neoformans var. neoformans B-3501A] Length = 309 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 90/193 (46%), Positives = 127/193 (65%), Gaps = 9/193 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPN A+LKFIPG V + GA H F + + A SPLA+R+ +I GI V+FG D Sbjct: 80 MFIQTETTPNEASLKFIPG-VQVTNGAAHEFLDLRSALQSPLATRLLTIDGITGVFFGPD 138 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+T K D Y W L+P V ++MEHF SG + G G+ + +D +++DS +V Sbjct: 139 FVTCSKDDSYSWSILKPEVFAVLMEHFSSGASLFKEGS-GESQAEDT---RILDTDSEIV 194 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+L+ RVRPA+ DGGDI ++G+ + G+V L ++G+C GC S+S TLK G+ +L Sbjct: 195 GMIKELLETRVRPAIMEDGGDIEYRGFDEDTGLVKLKLKGSCRGCSSSSVTLKNGIERML 254 Query: 177 NHFVPEVKDIRTV 189 H+VPEV+ + V Sbjct: 255 THYVPEVQSVEQV 267 >gi|225710000|gb|ACO10846.1| NFU1 iron-sulfur cluster scaffold homolog [Caligus rogercresseyi] Length = 237 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 79/194 (40%), Positives = 117/194 (60%), Gaps = 11/194 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG--AIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 M+I+T++TPNP +LKF+PG VL + F A SPLA +F + G+ V+FG Sbjct: 27 MYIRTQETPNPQSLKFLPGVRVLETAGSTLDFPTPSAAYCSPLAKLLFRVDGVKGVFFGQ 86 Query: 59 DFITVGKDQ---YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDS 115 DFIT+ K++ +W+ ++P V +M+ F SG PI++ + GD Sbjct: 87 DFITITKEEDSEVEWKVIKPEVYATLMDFFASGLPIVNEDAKPHSDTEIHEDGD------ 140 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE+LD+R+RP V DGGDI+F G+ DGIV L M+G+C+ CPS+ TLK GV N+ Sbjct: 141 DTVAMIKELLDSRIRPTVQEDGGDIIFMGFEDGIVKLKMQGSCTSCPSSIVTLKNGVQNM 200 Query: 176 LNHFVPEVKDIRTV 189 L ++PEV ++ + Sbjct: 201 LQFYIPEVIEVEQI 214 >gi|70990736|ref|XP_750217.1| NifU-related protein [Aspergillus fumigatus Af293] gi|66847849|gb|EAL88179.1| NifU-related protein [Aspergillus fumigatus Af293] gi|159130693|gb|EDP55806.1| NifU-related protein [Aspergillus fumigatus A1163] Length = 326 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 83/201 (41%), Positives = 119/201 (59%), Gaps = 12/201 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHF-------SNAKEAEISPLASRIFSIPGIA 52 +FIQTE+TPNP LKFIP VL EG F S SPLA+ +F++ G+ Sbjct: 85 IFIQTENTPNPDALKFIPNHRVLPEGFPTSFLEYLSPRSTLAPPHPSPLAANLFNVDGVT 144 Query: 53 SVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHN---GGLGDMKLDDMGSG 108 SV++G DFITV K +W H++P V +I + SG+ I++ G + + S Sbjct: 145 SVFYGPDFITVNKSSDANWAHIKPEVFSLITQAVTSGEAIVNTVEKTGEHAQESGEQESL 204 Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 F E D VV IKE+L+ R+RPA+ DGGDI +G+ +GIV L +RGAC C S++ TL Sbjct: 205 SFSEEDDEVVSMIKELLETRIRPAIQEDGGDIELRGFENGIVKLKLRGACRTCDSSTVTL 264 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ ++L H++ EV+ + V Sbjct: 265 KNGIESMLMHYIEEVQGVEQV 285 >gi|58269446|ref|XP_571879.1| iron ion homeostasis-related protein [Cryptococcus neoformans var. neoformans JEC21] gi|57228115|gb|AAW44572.1| iron ion homeostasis-related protein, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 309 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 90/193 (46%), Positives = 127/193 (65%), Gaps = 9/193 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPN A+LKFIPG V + GA H F + + A SPLA+R+ +I GI V+FG D Sbjct: 80 MFIQTETTPNEASLKFIPG-VQVTNGAAHEFLDLRSALQSPLATRLLTIDGITGVFFGPD 138 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+T K D Y W L+P V ++MEHF SG + G G+ + +D +++DS +V Sbjct: 139 FVTCSKDDSYSWSILKPEVFAVLMEHFSSGASLFKEGS-GESQAEDT---RILDTDSEIV 194 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+L+ RVRPA+ DGGDI ++G+ + G+V L ++G+C GC S+S TLK G+ +L Sbjct: 195 GMIKELLETRVRPAIMEDGGDIEYRGFDEDTGLVKLKLKGSCRGCSSSSVTLKNGIERML 254 Query: 177 NHFVPEVKDIRTV 189 H+VPEV+ + V Sbjct: 255 THYVPEVQSVEQV 267 >gi|118356024|ref|XP_001011271.1| NifU-like domain containing protein [Tetrahymena thermophila] gi|89293038|gb|EAR91026.1| NifU-like domain containing protein [Tetrahymena thermophila SB210] Length = 225 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 78/195 (40%), Positives = 121/195 (62%), Gaps = 14/195 (7%) Query: 1 MFIQTEDTPNPATLKFIP-GQVVLVEGA-IHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 +FIQ + TPNP LKF+P G+ V+ +G + F A+ A +SPLA ++F+I G+ V++G Sbjct: 25 LFIQAKSTPNPNFLKFVPSGKTVMNDGTTLDFIAARYAHVSPLAKKLFTIDGVNRVFYGK 84 Query: 59 DFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNG-GLGDMKLDDMGSGDFIESDSA 116 D+I++ K + DW L+P + +I E F P+ + D K+ D DS Sbjct: 85 DYISISKKEDADWNELKPQIFSLITEQFTGTTPLFTDEPEREDTKIKD--------DDSE 136 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVAN 174 VQ IKE++D R+RP V DGGD++++ + + GIV L+M G+CSGCPS+ TLK G+ Sbjct: 137 AVQMIKEIIDTRIRPLVQDDGGDVIYRNFDEPSGIVTLTMMGSCSGCPSSQVTLKQGIEK 196 Query: 175 ILNHFVPEVKDIRTV 189 ++ H+VPEV + +V Sbjct: 197 MIMHYVPEVNGVESV 211 >gi|328773127|gb|EGF83164.1| hypothetical protein BATDEDRAFT_9276 [Batrachochytrium dendrobatidis JAM81] Length = 225 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 87/193 (45%), Positives = 114/193 (59%), Gaps = 10/193 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAI---HFSNAKEAEISPLASRIFSIPGIASVYFG 57 MFIQTE TPN +LKF PG++VL EG F +A+EA SPLAS +F I G+ SV FG Sbjct: 9 MFIQTESTPNLDSLKFKPGKLVLPEGTTSTREFISAREAMQSPLASTLFRIDGVKSVLFG 68 Query: 58 YDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 D ITV K W ++P + G IM+ + SG P+ G D M + DS Sbjct: 69 KDVITVNKSPDVAWSIIKPDIFGAIMDFYSSGVPLFKVAFEG--PTDTM----ILPEDSE 122 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V IKE+LD R+RP + DGGDI + G+ +G V L +RGAC C S+ TLK G+ N+L Sbjct: 123 TVAMIKELLDTRIRPTIQEDGGDIEYMGFVNGAVRLKLRGACRTCDSSVVTLKNGIENML 182 Query: 177 NHFVPEVKDIRTV 189 H++PEV + V Sbjct: 183 MHYIPEVTAVEQV 195 >gi|164657977|ref|XP_001730114.1| hypothetical protein MGL_2496 [Malassezia globosa CBS 7966] gi|159104009|gb|EDP42900.1| hypothetical protein MGL_2496 [Malassezia globosa CBS 7966] Length = 276 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 78/193 (40%), Positives = 119/193 (61%), Gaps = 8/193 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPN +LKF+PG V+ +G F + + + SPLA +F++ G++ V++G DF Sbjct: 56 MFIQTESTPNEDSLKFLPGCRVMEKGTAEFLDQRSSMTSPLAKDLFALDGVSGVFYGPDF 115 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV KD W ++P V +ME F +G + + D +++DS VV Sbjct: 116 VTVTKDTDTPWSAIKPEVYSTMMEFFTAGHSLFPDPSSAQPGSDTT----ILDTDSEVVA 171 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY---RDGIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+LD RVRPA+ DGGD+ ++G+ DGIV + ++G+C GC S++ TLK G+ +L Sbjct: 172 MIKELLDTRVRPAIQEDGGDLEYRGFGEDSDGIVRVKLKGSCRGCDSSTVTLKSGIERML 231 Query: 177 NHFVPEVKDIRTV 189 H+VPEV+ + V Sbjct: 232 MHYVPEVQGVEQV 244 >gi|149238520|ref|XP_001525136.1| HIRA-interacting protein 5 [Lodderomyces elongisporus NRRL YB-4239] gi|146450629|gb|EDK44885.1| HIRA-interacting protein 5 [Lodderomyces elongisporus NRRL YB-4239] Length = 292 Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 85/195 (43%), Positives = 120/195 (61%), Gaps = 13/195 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT +TPN LKF+P +L E F + +EA SPLA R+FSI GI S+ FG + Sbjct: 68 LFIQTAETPNDHALKFLPSLQILGENETREFLSGREAHSSPLAVRLFSIDGIKSIMFGSN 127 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHN--GGLGDMKLDDMGSGDFIESDSA 116 FIT+ K QY+W L+P + ++ E+ G PI++ G L D D+ F E D Sbjct: 128 FITIEKLPQYEWALLKPEIFSILTEYLNQGLPIMNEEEGALAD----DVA---FNEDDDE 180 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVAN 174 VVQ IKE++ R+RPA+ DGGDI F +R DG VFL ++GAC C S+S TLK G+ + Sbjct: 181 VVQMIKELIFTRIRPAIQDDGGDIEFVEFRESDGTVFLRLKGACRSCDSSSVTLKNGIES 240 Query: 175 ILNHFVPEVKDIRTV 189 +L H++ EV+ + + Sbjct: 241 MLKHYIEEVQSVEPI 255 >gi|304320546|ref|YP_003854189.1| NifU-like domain protein [Parvularcula bermudensis HTCC2503] gi|303299448|gb|ADM09047.1| NifU-like domain protein [Parvularcula bermudensis HTCC2503] Length = 163 Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 76/165 (46%), Positives = 108/165 (65%), Gaps = 6/165 (3%) Query: 28 IHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFI 86 + F + A++SPLAS +F I G+ VY G DF+TV KD +W+HL+P VLG + ++ Sbjct: 1 MDFPTLESAKVSPLASALFDIDGVVEVYLGADFLTVTKDPSVEWQHLKPAVLGTVADYLA 60 Query: 87 SGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR 146 +G P++ G D D+ +V++I ++++ RVRPAVA+DGGDIVF + Sbjct: 61 AGIPVVDQGAAADSA---DTPDDYEGETKEIVEQIIDLIETRVRPAVAQDGGDIVFHRFV 117 Query: 147 --DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 DGIVFLSMRGACSGCPS++ TLK G+ N+L H+VPEV + V Sbjct: 118 PGDGIVFLSMRGACSGCPSSTMTLKSGIENLLKHYVPEVTAVEAV 162 >gi|88606830|ref|YP_504700.1| NifU domain-containing protein [Anaplasma phagocytophilum HZ] gi|88597893|gb|ABD43363.1| NifU domain protein [Anaplasma phagocytophilum HZ] Length = 188 Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 80/192 (41%), Positives = 127/192 (66%), Gaps = 7/192 (3%) Query: 1 MFIQTEDTPNPATLKFI-PGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ E TPNP TLKF+ +VV + F +A +A+ SPLA +F + G+ V+FG D Sbjct: 1 MFIQIESTPNPDTLKFLLSAEVVGINSGAEFLSADDAQASPLARLLFEVEGVEKVFFGGD 60 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEH-FISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 F+++ K + WE L+P VL ++ ++ + G H + + + E DS + Sbjct: 61 FVSITKAENILWEVLKPEVLVVMTDYCLLQGTDKEHVQASAEDEEKEFFD----EKDSEI 116 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 VQ++KE+++N V+PAVA+DGGDI F+GY++G+VF+ +RGACSGCPSA+ TLK GV +L+ Sbjct: 117 VQQVKELIENYVKPAVAQDGGDIKFRGYKEGVVFVKLRGACSGCPSAAVTLKDGVYGMLS 176 Query: 178 HFVPEVKDIRTV 189 +++P +K + ++ Sbjct: 177 YYIPAIKAVESI 188 >gi|220678984|emb|CAX14771.1| novel protein similar to HIRA interacting protein 5 (hirip5, zgc:110319) [Danio rerio] Length = 233 Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 76/185 (41%), Positives = 111/185 (60%), Gaps = 10/185 (5%) Query: 7 DTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK- 65 DTPNP +LKF+PG+ VL G F + AE SPLA +F I GI SV++G DFIT+ K Sbjct: 35 DTPNPRSLKFLPGKPVLGTGTQDFPTSASAESSPLARDLFQISGIKSVFYGPDFITLTKT 94 Query: 66 -DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEV 124 D +W ++ + +I + F G+ I + + E D +V IKE+ Sbjct: 95 DDDVEWTDIKRHAIEVISKFFEGGEAITTGAAHAESSV--------TEDDDEIVSLIKEL 146 Query: 125 LDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVK 184 LD R+RP V DGGD++FKG+ DG V L + G+C+GCPS++ TLK G+ N++ ++PEV Sbjct: 147 LDTRIRPTVQEDGGDVIFKGFEDGTVKLKLVGSCTGCPSSTVTLKNGIQNMMQFYIPEVD 206 Query: 185 DIRTV 189 ++ V Sbjct: 207 NVEQV 211 >gi|242802633|ref|XP_002484010.1| NifU-related protein [Talaromyces stipitatus ATCC 10500] gi|218717355|gb|EED16776.1| NifU-related protein [Talaromyces stipitatus ATCC 10500] Length = 321 Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 82/203 (40%), Positives = 119/203 (58%), Gaps = 14/203 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHF-------SNAKEAEISPLASRIFSIPGIA 52 +FIQTE TPNP LKF+P VL E F S SPLA+++ ++ G++ Sbjct: 81 IFIQTESTPNPDALKFLPNHRVLPENFPTPFLEYLSPRSTLAPPHPSPLAAKLLNVEGVS 140 Query: 53 SVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG--- 108 SV++G DFITV K +W H++P V +I E SG+PI++ D G Sbjct: 141 SVFYGPDFITVTKQSDVNWAHIKPEVFSLITEVVTSGEPIVNTVERTSGAQDAQEGGGED 200 Query: 109 --DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + E D VV IKE+L+ R+RPA+ DGGDI F+G+ +GIV L +RGAC C S++ Sbjct: 201 TLSYNEEDDEVVGMIKELLETRIRPAIQEDGGDIEFRGFENGIVLLKLRGACRTCDSSTV 260 Query: 167 TLKYGVANILNHFVPEVKDIRTV 189 TLK G+ ++L H++ EV+ ++ V Sbjct: 261 TLKNGIESMLMHYIEEVQGVQQV 283 >gi|71083083|ref|YP_265802.1| NifU-like domain-containing protein [Candidatus Pelagibacter ubique HTCC1062] gi|91762490|ref|ZP_01264455.1| NifU-like domain protein [Candidatus Pelagibacter ubique HTCC1002] gi|71062196|gb|AAZ21199.1| NifU-like domain protein [Candidatus Pelagibacter ubique HTCC1062] gi|91718292|gb|EAS84942.1| NifU-like domain protein [Candidatus Pelagibacter ubique HTCC1002] Length = 180 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 76/188 (40%), Positives = 122/188 (64%), Gaps = 13/188 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP +LKF+PG+ V G+ +E + + L I SI G+ V+ G DF Sbjct: 1 MFIQTEVTPNPNSLKFLPGKTVSNNGSFEVIKKEETD-NELVRNILSINGVTGVFLGEDF 59 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDP-IIHNGGLGDMKLDDMGSGDFIESDSAVV 118 I++ K ++ +WE ++ + +I + + +G +I N LG+ K E + + Sbjct: 60 ISINKNEEVNWEDIKHIAISLINDFYSTGKEFVIANELLGEKK----------EEHTEIE 109 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I +L++++RPAVA+DGGDI FK ++DGIV + ++G+CSGCPS++ TLK GV N+L H Sbjct: 110 KQIISILESKIRPAVAKDGGDIKFKEFKDGIVKVELQGSCSGCPSSTMTLKQGVQNLLCH 169 Query: 179 FVPEVKDI 186 ++PEVK++ Sbjct: 170 YLPEVKEV 177 >gi|255940800|ref|XP_002561169.1| Pc16g08500 [Penicillium chrysogenum Wisconsin 54-1255] gi|211585792|emb|CAP93520.1| Pc16g08500 [Penicillium chrysogenum Wisconsin 54-1255] Length = 320 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 116/200 (58%), Gaps = 11/200 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL--------VEGAIHFSNAKEAEISPLASRIFSIPGIA 52 +FIQTE+TPNP LKFIP VL +E S SPLA+++ + G+ Sbjct: 84 IFIQTENTPNPDALKFIPNHRVLPEDFPSTFLEYMSPRSTLAPPHPSPLAAKLLDVEGVT 143 Query: 53 SVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHN--GGLGDMKLDDMGSGD 109 SV++G DFITV K +W H++P V +I + SG+ I+ G + + S Sbjct: 144 SVFYGTDFITVTKGSDANWAHIKPEVFSIITQAVTSGETIVTTIEGAVDGEQESGEDSLS 203 Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 F E D VV IKE+L+ R+RPA+ DGGDI KG+ +GIV L +RGAC C S++ TLK Sbjct: 204 FNEDDDEVVSMIKELLETRIRPAIQEDGGDIELKGFENGIVMLKLRGACRTCDSSTVTLK 263 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ ++L H++ EVK + V Sbjct: 264 NGIESMLMHYIEEVKGVEQV 283 >gi|226480566|emb|CAX73380.1| HIRA interacting protein 5 [Schistosoma japonicum] gi|226480792|emb|CAX73493.1| HIRA interacting protein 5 [Schistosoma japonicum] Length = 233 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/190 (43%), Positives = 119/190 (62%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +FIQ ++TPNP +LK+ PGQ VL G F + K+A SPLA ++F I G+ V+FG DF Sbjct: 25 LFIQAQETPNPNSLKYFPGQAVLGSGTRDFPSRKQAGSSPLARQLFRIEGVEQVFFGPDF 84 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 IT+ K+ ++W ++P V IM+ + SG P+I + S E D V Sbjct: 85 ITITKNNDFEWAVIKPDVYATIMDFYSSGQPVIDEEKSQE-------SDKPCEVDDETVL 137 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+LD R+RP V DGGDI++KG++DGIV L ++G+CS CPS+ TLK GV N+L + Sbjct: 138 MIKELLDTRIRPTVQEDGGDIIYKGFKDGIVLLKLQGSCSSCPSSVVTLKNGVQNMLQFY 197 Query: 180 VPEVKDIRTV 189 +P+V + V Sbjct: 198 IPDVLGVEQV 207 >gi|238486392|ref|XP_002374434.1| NifU-related protein [Aspergillus flavus NRRL3357] gi|317144282|ref|XP_003189583.1| nifU-related protein [Aspergillus oryzae RIB40] gi|220699313|gb|EED55652.1| NifU-related protein [Aspergillus flavus NRRL3357] Length = 329 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 79/201 (39%), Positives = 119/201 (59%), Gaps = 12/201 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL--------VEGAIHFSNAKEAEISPLASRIFSIPGIA 52 +FIQTE+TPNP LKFIP VL +E S SPLA+ +F++ G+ Sbjct: 88 IFIQTENTPNPDALKFIPNHRVLPEDFPTSFLEYLSPRSTLAPPHPSPLAANLFNVDGVT 147 Query: 53 SVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHN---GGLGDMKLDDMGSG 108 S++FG +FITV K +W H++P + +I + SG+PI++ G + + S Sbjct: 148 SIFFGPEFITVTKASDANWAHIKPEIFSLITQAVTSGEPIVNTVAKSGENAQEGGEEESL 207 Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 + E D VV IKE+L+ R+RPA+ DGGDI +G+ +GIV L +RGAC C S++ TL Sbjct: 208 SYNEEDDEVVSMIKELLETRIRPAIQEDGGDIELRGFENGIVMLKLRGACRTCDSSTVTL 267 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ ++L H++ EV+ + V Sbjct: 268 KNGIESMLMHYIEEVQGVEQV 288 >gi|198427432|ref|XP_002130447.1| PREDICTED: similar to NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) [Ciona intestinalis] Length = 284 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 80/194 (41%), Positives = 119/194 (61%), Gaps = 12/194 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT +TPNP LKF+PG VL G F + K + SPLA R+F I G+ +V+ G DF Sbjct: 72 MFIQTFETPNPNCLKFVPGVPVLGTGTADFPDWKNSYKSPLAKRLFGIEGVKAVFLGPDF 131 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGD-PIIHNGGLGDMKLDDMGSGDFIESDSAV 117 +TV + ++ W+ L+P + ++M+ F +G+ P++ + G E D + Sbjct: 132 LTVTRQDEEVQWKVLKPEIYSLVMDFFTAGNIPVLTDEGPS-------ADTVVDEDDDEI 184 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANI 175 V +KE+LD R+RP V DGGDI+FKG+ G V L ++G+CS CPS+S TLK G+ N+ Sbjct: 185 VAMVKELLDTRIRPTVMEDGGDIIFKGFDPETGSVKLKLQGSCSNCPSSSVTLKSGIENM 244 Query: 176 LNHFVPEVKDIRTV 189 L ++PEV ++ V Sbjct: 245 LKFYIPEVMEVEEV 258 >gi|331214376|ref|XP_003319869.1| iron-sulfur cluster scaffold protein Nfu [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309298859|gb|EFP75450.1| iron-sulfur cluster scaffold protein Nfu [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 357 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 81/199 (40%), Positives = 119/199 (59%), Gaps = 18/199 (9%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +FIQTE TPN LKFIPG+ V+ G+ F + SPLA + S+ G+ SV+FG DF Sbjct: 139 IFIQTEPTPNADALKFIPGRPVMKSGSREFLKGDDTRSSPLARSLLSVEGVKSVFFGPDF 198 Query: 61 ITVGKD-QYDWEHLRPPVLGMIMEHFISGD-------PIIHNGGLGDMKLDDMGSGDFIE 112 I++ K+ + W ++P + ++ME F + D PI G D ++ D Sbjct: 199 ISINKESEVGWPTMKPEIYSLLMEFFSASDRPVVQEGPIEEESGPLDTRIHD-------- 250 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKY 170 DS VV IKE+LD RVRPA+ DGGD+ +KG+ + G+V L ++G+C GC S++ TLK Sbjct: 251 DDSEVVAMIKELLDTRVRPAIQEDGGDLEYKGFNEETGVVQLMLKGSCRGCDSSAVTLKS 310 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ +L H+VPEV+ + V Sbjct: 311 GIERMLMHYVPEVQCVEQV 329 >gi|302695957|ref|XP_003037657.1| hypothetical protein SCHCODRAFT_48637 [Schizophyllum commune H4-8] gi|300111354|gb|EFJ02755.1| hypothetical protein SCHCODRAFT_48637 [Schizophyllum commune H4-8] Length = 220 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 82/197 (41%), Positives = 124/197 (62%), Gaps = 13/197 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE-GAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPN ++KFIPG V+ E G F + + A SPLA R+ I G+ +V++G D Sbjct: 1 MFIQTESTPNEDSIKFIPGVPVMGESGTAEFLDTRSALTSPLAVRLMGIEGVRAVFYGPD 60 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG----DFIESD 114 F+TV K ++ W ++P + ++ME F S +N L K D +G +++D Sbjct: 61 FVTVSKSSEHPWSVIKPEIYSVLMEFFTS-----NNQPLFRSKEDRENAGPQDTRILDTD 115 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGV 172 S VV IKE+L+ RVRPA+ DGGDI ++G+ + G+V + ++G+C GC S++ TLK G+ Sbjct: 116 SDVVAMIKELLETRVRPAIMEDGGDIEYRGFDEESGVVQVKLKGSCRGCSSSTVTLKTGI 175 Query: 173 ANILNHFVPEVKDIRTV 189 N+L H++PEVK + V Sbjct: 176 ENMLMHYIPEVKGVEQV 192 >gi|148697451|gb|EDL29398.1| mCG14627 [Mus musculus] Length = 181 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 81/179 (45%), Positives = 110/179 (61%), Gaps = 8/179 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + FS A SPLA ++F I G+ SV+FG DF Sbjct: 1 MFIQTQDTPNPNSLKFIPGKRVLETRTMDFSTPAAAFRSPLARQLFRIEGVKSVFFGPDF 60 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ + GS E D VV Sbjct: 61 ITVTKENGELDWNLLKPDIHATIMDFFASGLPLVTEE--TPPPPGEAGS----EEDDGVV 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+LD R+RP V DGGD++++ + DGIV L ++G+C CPS+ TLK G+ + Sbjct: 115 AMIKELLDTRIRPTVQEDGGDVIYRAFEDGIVRLKLQGSCPSCPSSIITLKSGIRTCCS 173 >gi|91205888|ref|YP_538243.1| NifU-like protein [Rickettsia bellii RML369-C] gi|157826752|ref|YP_001495816.1| NifU-like protein [Rickettsia bellii OSU 85-389] gi|91069432|gb|ABE05154.1| NifU-like protein [Rickettsia bellii RML369-C] gi|157802056|gb|ABV78779.1| NifU-like protein [Rickettsia bellii OSU 85-389] Length = 185 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 82/181 (45%), Positives = 124/181 (68%), Gaps = 11/181 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTEDTPNP +KF PGQ + + I FS E + S LA +F+I + S++FG D Sbjct: 1 MFIQTEDTPNPDAIKFFPGQEISTQ-PIFFSERAEVKGKSKLAESLFNINNVKSIFFGSD 59 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K + DW+ ++P VL ++M+HF++G P+ K+DD+ +E S + Sbjct: 60 FITVTKKTESDWQVIKPEVLMVVMDHFVAGFPVFEVSS----KVDDVN----LEGFSDIE 111 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I E+++ RVRP+VA+DGGDI++KG+ +G+V L++RGAC GCPS++ TLK G+ ++L H Sbjct: 112 KQIIEIIETRVRPSVAQDGGDIIYKGFENGVVKLALRGACLGCPSSTITLKNGIESMLKH 171 Query: 179 F 179 F Sbjct: 172 F 172 >gi|322710719|gb|EFZ02293.1| NifU-like protein [Metarhizium anisopliae ARSEF 23] Length = 297 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 84/202 (41%), Positives = 122/202 (60%), Gaps = 16/202 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE+TPNP LKF+P V+ E I + N + SPLA+++ +I GI Sbjct: 73 IFIQTENTPNPDALKFLPNHRVVPEEINTPFIEYLNPRSTISPPYPSPLAAKLMNIDGIT 132 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPII----HNGGLGDMKLDDMGS 107 SV++G DFITV K +W H+RP + +I E SG+ I+ G D++ D + Sbjct: 133 SVFYGADFITVTKAGDANWAHVRPEIFALITEAITSGETIVSIAERKEGDEDIEEDSLA- 191 Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASET 167 + E+DS VV IKE+L+ R+RPA+ DGGDI F+G+ DG V L +RGAC C S++ T Sbjct: 192 --YNENDSEVVGMIKELLETRIRPAIQEDGGDIEFRGFDDGYVKLKLRGACRTCDSSTVT 249 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 LK G+ +L H++ EVK + + Sbjct: 250 LKNGIEGMLMHYIEEVKGVHQI 271 >gi|212540196|ref|XP_002150253.1| NifU-related protein [Penicillium marneffei ATCC 18224] gi|210067552|gb|EEA21644.1| NifU-related protein [Penicillium marneffei ATCC 18224] Length = 285 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 85/197 (43%), Positives = 118/197 (59%), Gaps = 20/197 (10%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHF-------SNAKEAEISPLASRIFSIPGIA 52 +FIQTE TPNP LKF+P VL E + F S SPLA+++ +I GI+ Sbjct: 81 IFIQTESTPNPDALKFLPNNRVLPENFSTPFLEYLSPRSTLAPPHPSPLAAKLLNIEGIS 140 Query: 53 SVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPII----HNGGLGDMKL----D 103 SV++G DFITV K +W H++P V +I E SG+PI+ H G D + D Sbjct: 141 SVFYGPDFITVTKSSDVNWAHVKPEVFSLITEVVTSGEPIVNTVEHTSGAQDAQEGGGED 200 Query: 104 DMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPS 163 +G + E D VV IKE+L+ R+RPA+ DGGDI F+G+ +GIV L +RGAC C S Sbjct: 201 TLG---YNEEDDEVVGMIKELLETRIRPAIQEDGGDIEFRGFENGIVLLKLRGACRTCDS 257 Query: 164 ASETLKYGVANILNHFV 180 ++ TLK G+ ++L H+V Sbjct: 258 STVTLKNGIESMLMHYV 274 >gi|115376684|ref|ZP_01463912.1| NifU domain protein [Stigmatella aurantiaca DW4/3-1] gi|310823922|ref|YP_003956280.1| NIF system FeS cluster assembly, NifU family protein [Stigmatella aurantiaca DW4/3-1] gi|115366301|gb|EAU65308.1| NifU domain protein [Stigmatella aurantiaca DW4/3-1] gi|309396994|gb|ADO74453.1| NIF system FeS cluster assembly, NifU family protein [Stigmatella aurantiaca DW4/3-1] Length = 187 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 76/189 (40%), Positives = 117/189 (61%), Gaps = 8/189 (4%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYDFI 61 IQ E TPNP+TLK++ + +L GA++F+ +EAE SPLA ++ I G+ +V G +F+ Sbjct: 5 IQLEWTPNPSTLKYVVDRRLLSSGAVNFTRREEAEQKSPLARKLMDIQGVTAVMLGLNFV 64 Query: 62 TVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 TV K D+ +W+ L V+ + H S +P++ D E S+V QR Sbjct: 65 TVTKGDEGEWDELNDAVMSTLDAHLGSDEPVV------DEAAVAAARAAPAEGGSSVEQR 118 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I+E+LD +RPAVA+DGGDI Y +G+V+L M+G+CSGCPS++ TLK G+ L + Sbjct: 119 IREILDAEIRPAVAQDGGDITLDRYENGVVYLHMQGSCSGCPSSTATLKMGIEGRLREAI 178 Query: 181 PEVKDIRTV 189 PEV ++ ++ Sbjct: 179 PEVTEVVSI 187 >gi|310796741|gb|EFQ32202.1| hypothetical protein GLRG_07346 [Glomerella graminicola M1.001] Length = 316 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 122/207 (58%), Gaps = 18/207 (8%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEAEI----SPLASRIFSIPGIA 52 +FIQTE TPN +KF+P +L E I + N + SPLA+++ +I G+ Sbjct: 80 IFIQTEQTPNADAIKFLPNHRILPENISTPFIEYLNPRSTIAPPYPSPLAAQLMNIDGVT 139 Query: 53 SVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIH-----NGGLGDMKLDDMG 106 SV++G DFITV K +W H+RP V +I E SG I++ GG+ + G Sbjct: 140 SVFYGADFITVSKAADANWAHIRPEVFALITEAITSGQSIVNVAEKKEGGVAGEEQQQHG 199 Query: 107 SGD---FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCP 162 D + E+DS VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C Sbjct: 200 EEDSLAYDENDSEVVGMIKELLETRIRPAIQEDGGDIEFRGFTDDGIVLLKLRGACRTCD 259 Query: 163 SASETLKYGVANILNHFVPEVKDIRTV 189 S++ TLK G+ +L H++ EVK ++ + Sbjct: 260 SSTVTLKNGIEGMLMHYIEEVKGVQQI 286 >gi|322696539|gb|EFY88330.1| NifU-like protein [Metarhizium acridum CQMa 102] Length = 297 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 83/202 (41%), Positives = 122/202 (60%), Gaps = 16/202 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE+TPNP LKF+P V+ E I + N + SPLA+++ +I GI Sbjct: 73 IFIQTENTPNPDALKFLPNHRVVPEEINTPFIEYLNPRSTISPPYPSPLAAKLMNIDGIT 132 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPII----HNGGLGDMKLDDMGS 107 SV++G DFITV K +W H+RP + +I E SG+ I+ G D++ D + Sbjct: 133 SVFYGADFITVTKAGDANWAHIRPEIFALITEAITSGETIVSVAERKEGDEDIEEDSLA- 191 Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASET 167 + E+DS VV IKE+L+ R+RPA+ DGGDI ++G+ DG V L +RGAC C S++ T Sbjct: 192 --YNENDSEVVGMIKELLETRIRPAIQEDGGDIEYRGFDDGYVKLKLRGACRTCDSSTVT 249 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 LK G+ +L H++ EVK + + Sbjct: 250 LKNGIEGMLMHYIEEVKGVHQI 271 >gi|224009450|ref|XP_002293683.1| nifu-like protein [Thalassiosira pseudonana CCMP1335] gi|220970355|gb|EED88692.1| nifu-like protein [Thalassiosira pseudonana CCMP1335] Length = 210 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 84/194 (43%), Positives = 124/194 (63%), Gaps = 15/194 (7%) Query: 1 MFIQTEDTPNPATLKFIP-GQVVLVEGAIHFSNAKEAEI---SPLASRIFSIP-GIASVY 55 +FIQT TPNP +LKFIP G++ + A + K+ + SPLA ++F++ GI S+Y Sbjct: 15 LFIQTATTPNPESLKFIPNGRLNNTDTAGFYVTRKDHTLIARSPLAKQLFNLDIGIKSLY 74 Query: 56 FGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESD 114 GYDFITV K + W+HL+ P+ G IM+ + SG P + G+ ++ D +E D Sbjct: 75 LGYDFITVTKFAEAHWQHLQTPIFGAIMDFYASGKPALR----GEPEITDTT---ILEDD 127 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGV 172 VV IKE+L++R+RPAV DGGDI + G+ + G+V + + G+C GCPS+S TLK GV Sbjct: 128 DEVVAMIKELLESRIRPAVQEDGGDIRYVGFEEETGLVTVQLAGSCVGCPSSSVTLKNGV 187 Query: 173 ANILNHFVPEVKDI 186 N+L H++PEV + Sbjct: 188 ENMLMHYIPEVTAV 201 >gi|328872467|gb|EGG20834.1| NIF system FeS cluster assembly domain-containing protein [Dictyostelium fasciculatum] Length = 313 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 76/190 (40%), Positives = 118/190 (62%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +FIQTE TPNP +LKF+PG V+ +G + F + K ++ISPLA+ IF + G+ V+FG F Sbjct: 104 IFIQTETTPNPDSLKFLPGVEVMEQGTVDFPDFKSSQISPLANAIFKLDGVNRVFFGPSF 163 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I+V K + +W L+P V G I+ + SG P++ + D + + D VV Sbjct: 164 ISVNKFTETEWSILKPQVYGAIINFYHSGQPLLLEKPSAENN-DTL----ILPEDDEVVA 218 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+++ R+RP + DGG+I + G++DGIV + ++G CS C S+ TLK G+ +L H+ Sbjct: 219 MIKELIETRIRPTLLDDGGNIQYLGFKDGIVLVKLQGTCSSCSSSQATLKGGIERMLMHW 278 Query: 180 VPEVKDIRTV 189 + EV+ I V Sbjct: 279 ISEVRGIMAV 288 >gi|150864668|ref|XP_001383601.2| hypothetical protein PICST_82838 [Scheffersomyces stipitis CBS 6054] gi|149385924|gb|ABN65572.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 254 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 82/196 (41%), Positives = 121/196 (61%), Gaps = 15/196 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT +TPN + LKF+P +L E I F + +EA SPLA ++FSI GI S+ FG + Sbjct: 33 LFIQTVETPNESALKFLPSIKLLEENETIEFLSGREAARSPLAVKLFSIDGIKSIMFGSN 92 Query: 60 FITVGKDQYD--WEHLRPPVLGMIMEHFISGDPIIHNGGL--GDMKLDDMGSGDFIESDS 115 FIT+ K+ D W L+P + ++ E+ +G PI+ +G DM+++D D Sbjct: 93 FITIEKNSNDLHWSLLKPEIFSILTEYLTNGTPILIDGESLSKDMEIND--------DDD 144 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVA 173 VV IKE++ R+RPA+ DGGDI F +R DG VFL ++GAC C S+S TLK G+ Sbjct: 145 EVVSIIKELIFTRIRPAIQDDGGDIEFVSFREEDGTVFLRLKGACRSCDSSSVTLKNGIE 204 Query: 174 NILNHFVPEVKDIRTV 189 ++L +++ EVK + V Sbjct: 205 SMLKYYIEEVKAVEQV 220 >gi|162312172|ref|NP_595452.2| NifU-like protein [Schizosaccharomyces pombe 972h-] gi|46397296|sp|Q9UUB8|YH9J_SCHPO RecName: Full=NifU-like protein C1709.19c gi|157310401|emb|CAA21258.2| NifU-like protein [Schizosaccharomyces pombe] Length = 260 Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 75/194 (38%), Positives = 118/194 (60%), Gaps = 10/194 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL--VEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 ++I++E+TPN LKF+PG +L G+ F + SPLA ++F I G+ S++FG Sbjct: 43 IWIRSEETPNENALKFLPGLDILPPTIGSCEFMRGQGTVNSPLAQKLFDIDGVDSIFFGK 102 Query: 59 DFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 DFITV K +W ++P V +IMEH +G P+ L + L +ESDS + Sbjct: 103 DFITVSKGAGTEWAQMKPEVFSVIMEHLSNGSPV-----LSEEPLKGASDTQILESDSQI 157 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE+++ +RP++ DGGD+ F+G+ + G V L +RGAC C S++ TLK G+ + Sbjct: 158 VAMIKELIETSIRPSIQEDGGDVEFRGFDEKTGTVSLKLRGACRTCSSSAVTLKNGIQQM 217 Query: 176 LNHFVPEVKDIRTV 189 L H++PEV+++ V Sbjct: 218 LKHYIPEVENVVQV 231 >gi|119496847|ref|XP_001265197.1| NifU-related protein [Neosartorya fischeri NRRL 181] gi|119413359|gb|EAW23300.1| NifU-related protein [Neosartorya fischeri NRRL 181] Length = 326 Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 82/201 (40%), Positives = 118/201 (58%), Gaps = 12/201 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHF-------SNAKEAEISPLASRIFSIPGIA 52 +FIQTE+TPNP LKFIP VL E F S SPLA+ +F++ G+ Sbjct: 85 IFIQTENTPNPDALKFIPNHRVLPEDFPTSFLEYLSPRSTLAPPHPSPLAANLFNVDGVT 144 Query: 53 SVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHN---GGLGDMKLDDMGSG 108 SV++G DFITV K +W H++P V +I + SG+ I++ G + + S Sbjct: 145 SVFYGPDFITVSKSSDANWAHIKPEVFSLITQAVTSGEAIVNTVEKTGEHAQEGGEEESL 204 Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 F E D VV IKE+L+ R+RPA+ DGGDI +G+ +GIV L +RGAC C S++ TL Sbjct: 205 SFNEEDDEVVSMIKELLETRIRPAIQEDGGDIELRGFENGIVKLKLRGACRTCDSSTVTL 264 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ ++L H++ EV+ + V Sbjct: 265 KNGIESMLMHYIEEVQGVEQV 285 >gi|157826074|ref|YP_001493794.1| hypothetical protein A1C_05170 [Rickettsia akari str. Hartford] gi|157800032|gb|ABV75286.1| hypothetical protein A1C_05170 [Rickettsia akari str. Hartford] Length = 190 Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 79/181 (43%), Positives = 120/181 (66%), Gaps = 8/181 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTEDTPNP +KF PGQ + + + FS E + S LA +F I + S++FG D Sbjct: 1 MFIQTEDTPNPDAIKFFPGQEISSDQPVFFSELAEVKGRSKLAESLFHINNVKSIFFGSD 60 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K + +W+ ++P VL +IM+HF++G P+ D + I+ S + Sbjct: 61 FITVTKQAEGNWQIIKPEVLMIIMDHFVAGFPVFEESTKADTVNHN------IDGFSEIE 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I E+++ RVRP+VA+DGGDI++KG+ +G+V L++RGAC GCPS++ TLK G+ ++L H Sbjct: 115 KQIIEIIETRVRPSVAQDGGDIIYKGFENGVVKLALRGACRGCPSSTITLKNGIESMLKH 174 Query: 179 F 179 F Sbjct: 175 F 175 >gi|241959110|ref|XP_002422274.1| nifU-like protein, mitochondrial precursor, putative; protein involved in iron metabolism in mitochondria, putative [Candida dubliniensis CD36] gi|223645619|emb|CAX40278.1| nifU-like protein, mitochondrial precursor, putative [Candida dubliniensis CD36] Length = 302 Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 11/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAI-HFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT +TPN LKF+P +L + F + +EA SPLA ++FSI GI SV FG D Sbjct: 77 LFIQTSETPNEQALKFLPSIKILQDNQTKEFLSGREAASSPLALKLFSIDGIRSVMFGSD 136 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGD----MKLDDMGSGDFIESD 114 FIT+ K + +DW L+P + ++ E+ +G PI+ G+ + + +DM E D Sbjct: 137 FITIEKLNNFDWSLLKPEIFSILTEYLTNGTPILLEDGVDEDGNSLLTNDMAIN---EDD 193 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGV 172 VV IKE++ R+RPA+ DGGDI F + DG V+L ++GAC C S+S TLK G+ Sbjct: 194 DEVVSMIKELIFTRIRPAIQDDGGDIEFVNFNEEDGTVYLRLKGACRSCDSSSVTLKNGI 253 Query: 173 ANILNHFVPEV 183 ++L H++ EV Sbjct: 254 ESMLKHYIEEV 264 >gi|121702857|ref|XP_001269693.1| NifU-related protein [Aspergillus clavatus NRRL 1] gi|119397836|gb|EAW08267.1| NifU-related protein [Aspergillus clavatus NRRL 1] Length = 320 Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 80/201 (39%), Positives = 117/201 (58%), Gaps = 12/201 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL--------VEGAIHFSNAKEAEISPLASRIFSIPGIA 52 +FIQTE+TPNP LKFIP VL +E S SPLA+ +F++ G+ Sbjct: 79 IFIQTENTPNPDALKFIPNHRVLPEEFPTSFLEYLSPRSTLAPPHPSPLAANLFNVEGVT 138 Query: 53 SVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD-- 109 SV++G DFITV K +W H++P V +I + SG+ I++ + G D Sbjct: 139 SVFYGPDFITVTKSSDANWAHIKPEVFSLITQAVTSGETIVNTVEKSGEHAQEGGEQDSL 198 Query: 110 -FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 F E D V+ IKE+L+ R+RPA+ DGGDI +G+ +GIV L +RGAC C S++ TL Sbjct: 199 SFNEEDDEVIGMIKELLETRIRPAIQEDGGDIELRGFENGIVKLKLRGACRTCDSSTVTL 258 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ ++L H++ EV+ + V Sbjct: 259 KNGIESMLMHYIEEVQGVEQV 279 >gi|169608792|ref|XP_001797815.1| hypothetical protein SNOG_07481 [Phaeosphaeria nodorum SN15] gi|111063827|gb|EAT84947.1| hypothetical protein SNOG_07481 [Phaeosphaeria nodorum SN15] Length = 263 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 81/202 (40%), Positives = 120/202 (59%), Gaps = 19/202 (9%) Query: 4 QTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIASVY 55 +TE TPN LKF P Q VL E + + N + SPLA+++ +I G+ SV+ Sbjct: 24 KTEPTPNDDALKFNPNQRVLPESISSPFLEYLNPRSTLAPPHPSPLAAQLLNIDGVTSVF 83 Query: 56 FGYDFITVGKDQYD-WEHLRPPVLGMIMEHFISGDPIIHN-------GGLGDMKLDDMGS 107 G D ITV KD W H++P V +I E SG P+++ G G+ ++D + Sbjct: 84 LGLDHITVTKDTSTPWAHIKPEVFAIINEFMTSGQPLVNTIADKGNEQGQGNSEVDSLA- 142 Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASET 167 + E+DS VVQ IKE+L+ R+RP++ DGGDI F+G+ DG V L +RGAC C S++ T Sbjct: 143 --YDENDSEVVQMIKELLETRIRPSIQEDGGDIDFRGFNDGQVLLKLRGACRTCDSSTVT 200 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 LK G+ ++L H++ EVK ++ V Sbjct: 201 LKNGIESMLMHYIEEVKGVQQV 222 >gi|115390869|ref|XP_001212939.1| HIRA-interacting protein 5 [Aspergillus terreus NIH2624] gi|114193863|gb|EAU35563.1| HIRA-interacting protein 5 [Aspergillus terreus NIH2624] Length = 323 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 78/201 (38%), Positives = 117/201 (58%), Gaps = 12/201 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL--------VEGAIHFSNAKEAEISPLASRIFSIPGIA 52 +FIQTE+TPNP LKFIP VL +E S SPLA+ + ++ G+ Sbjct: 86 IFIQTENTPNPDALKFIPNHRVLPEDFPTTFLEYLSPRSTLAPPHPSPLAANLLNVEGVT 145 Query: 53 SVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD-- 109 SV++G DFITV K +W H++P V +I + SG+ +++ + G + Sbjct: 146 SVFYGPDFITVTKASDANWAHIKPEVFSLITQAVTSGEALVNTVAKTGEHAQEGGEEESL 205 Query: 110 -FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 + E D VV IKE+LD R+RPA+ DGGDI F+G+ +GIV L +RGAC C S++ TL Sbjct: 206 GYNEEDDEVVSMIKELLDTRIRPAIQEDGGDIEFRGFENGIVMLKLRGACRTCDSSTVTL 265 Query: 169 KYGVANILNHFVPEVKDIRTV 189 + G+ ++L H++ EV+ + V Sbjct: 266 RNGIESMLMHYIEEVQGVEQV 286 >gi|68490038|ref|XP_711140.1| hypothetical protein CaO19.6283 [Candida albicans SC5314] gi|68490075|ref|XP_711122.1| hypothetical protein CaO19.13662 [Candida albicans SC5314] gi|46432400|gb|EAK91883.1| hypothetical protein CaO19.13662 [Candida albicans SC5314] gi|46432419|gb|EAK91901.1| hypothetical protein CaO19.6283 [Candida albicans SC5314] Length = 262 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 78/197 (39%), Positives = 117/197 (59%), Gaps = 11/197 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAI-HFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT +TPN LKF+P +L + F + +EA SPLA ++FSI GI SV FG D Sbjct: 32 LFIQTSETPNEQALKFLPSIKILQDNQTKEFLSGREAASSPLALKLFSIDGIRSVMFGSD 91 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGD----MKLDDMGSGDFIESD 114 FIT+ K + +DW L+P + ++ E+ +G PI+ + + + +DM E D Sbjct: 92 FITIEKSNNFDWSLLKPEIFSILTEYLTNGTPILLEDNVDEYGNSLLTNDMAIN---EDD 148 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGV 172 VV IKE++ R+RPA+ DGGDI F + DG V+L ++GAC C S+S TLK G+ Sbjct: 149 DEVVSMIKELIFTRIRPAIQDDGGDIEFVNFNEEDGTVYLRLKGACRSCDSSSVTLKNGI 208 Query: 173 ANILNHFVPEVKDIRTV 189 ++L H++ EV + + Sbjct: 209 ESMLKHYIEEVNSVEPI 225 >gi|68492023|ref|XP_710207.1| hypothetical protein CaO19.3485 [Candida albicans SC5314] gi|46431364|gb|EAK90941.1| hypothetical protein CaO19.3485 [Candida albicans SC5314] Length = 262 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 78/197 (39%), Positives = 117/197 (59%), Gaps = 11/197 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAI-HFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT +TPN LKF+P +L + F + +EA SPLA ++FSI GI SV FG D Sbjct: 32 LFIQTSETPNEQALKFLPSIKILQDNQTKEFLSGREAASSPLALKLFSIDGIRSVMFGSD 91 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGD----MKLDDMGSGDFIESD 114 FIT+ K + +DW L+P + ++ E+ +G PI+ + + + +DM E D Sbjct: 92 FITIEKSNNFDWSLLKPEIFSILTEYLTNGTPILLEDNVDEYGNSLLTNDMAIN---EDD 148 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGV 172 VV IKE++ R+RPA+ DGGDI F + DG V+L ++GAC C S+S TLK G+ Sbjct: 149 DEVVSMIKELIFTRIRPAIQDDGGDIEFVNFNEEDGTVYLRLKGACRSCDSSSVTLKNGI 208 Query: 173 ANILNHFVPEVKDIRTV 189 ++L H++ EV + + Sbjct: 209 ESMLKHYIEEVNSVEPI 225 >gi|281208054|gb|EFA82232.1| NIF system FeS cluster assembly domain-containing protein [Polysphondylium pallidum PN500] Length = 307 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 76/191 (39%), Positives = 119/191 (62%), Gaps = 7/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQTE+TPNP +LKF+PG V+ G I F + K ++ISPLA+ IF + G+ V++G D Sbjct: 96 LFIQTENTPNPDSLKFVPGIEVMPPGKTIDFPDFKSSQISPLANAIFKLDGVNRVFYGPD 155 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FI+V K +++W L+P V G I++ + S P+ L + ++ + D V Sbjct: 156 FISVNKFPEHEWAILKPQVFGAIIDFYHSDKPL-----LSETPTNENSDTLILPEDDETV 210 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+++ RVRP + DGG+I + G++DGIV + ++G CS C S+ TLK G+ +L H Sbjct: 211 AMIKELIETRVRPTLLDDGGNIQYLGFKDGIVLVKLQGTCSSCSSSQATLKGGIERMLMH 270 Query: 179 FVPEVKDIRTV 189 ++ EV+ I V Sbjct: 271 WISEVRGIMAV 281 >gi|145605625|ref|XP_370496.2| NifU-related protein [Magnaporthe oryzae 70-15] gi|145013431|gb|EDJ98072.1| NifU-related protein [Magnaporthe oryzae 70-15] Length = 319 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/202 (40%), Positives = 119/202 (58%), Gaps = 16/202 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEAEI----SPLASRIFSIPGIA 52 +FIQTE TPN LKF+P VL E I + N + SPLA+++ +I G+ Sbjct: 74 IFIQTEPTPNSDALKFLPNHRVLPEDISTPFIEYLNPRSTIAPPYPSPLAAQLMNIDGVQ 133 Query: 53 SVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIH-------NGGLGDMKLDD 104 SV++G DFITV K +W H+RP + +I E SG I++ +G G + Sbjct: 134 SVFYGADFITVTKASDANWAHIRPEIFSLITEAITSGQKIVNIVERTDASGEDGQETSGE 193 Query: 105 MGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSA 164 + S + E+DS VV IKE+L+ R+RPA+ DGGDI F+G+ DG V L +RGAC C S+ Sbjct: 194 VDSLSYNENDSEVVGMIKELLETRIRPAIQEDGGDIEFRGFEDGNVLLKLRGACRTCDSS 253 Query: 165 SETLKYGVANILNHFVPEVKDI 186 + TLK G+ +L H++ EV+ + Sbjct: 254 TVTLKNGIEGMLMHYIEEVQGV 275 >gi|325187609|emb|CCA22145.1| ironsulfur cluster scaffold protein Nfulike protein putative [Albugo laibachii Nc14] Length = 287 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/196 (41%), Positives = 117/196 (59%), Gaps = 14/196 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL----VEGAIHFSNAKEAEISPLASRIFSIPGIASVYF 56 MF+QTE TPNP +LKF+PG+ VL G A E SPLA ++F I GI+ V+F Sbjct: 71 MFVQTEPTPNPNSLKFLPGKPVLDDRFTTGVDFVPGAAEIRQSPLAKKLFQIDGISRVFF 130 Query: 57 GYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDS 115 G DFI+V K D W+ LR + I++ + +G+ + + + + + D Sbjct: 131 GKDFISVTKADDMHWDALRAEIFATIIDFYGTGEATMSDEPI-------VTDTTILPEDD 183 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVA 173 VV IKE+L+ R+RP+V DGGDI +K + GIV L + GAC+GCPS+S TLK GV Sbjct: 184 EVVAMIKELLEQRIRPSVQDDGGDIFYKDFDVERGIVKLQLAGACAGCPSSSVTLKSGVE 243 Query: 174 NILNHFVPEVKDIRTV 189 N+L +++PEV+ I V Sbjct: 244 NMLKYYIPEVQGIEEV 259 >gi|156044806|ref|XP_001588959.1| hypothetical protein SS1G_10507 [Sclerotinia sclerotiorum 1980] gi|154694895|gb|EDN94633.1| hypothetical protein SS1G_10507 [Sclerotinia sclerotiorum 1980 UF-70] Length = 372 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 82/202 (40%), Positives = 120/202 (59%), Gaps = 14/202 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTEDTPNP LKF+P +L I + N + SPLA+ + +I G+ Sbjct: 76 IFIQTEDTPNPDALKFLPNHPILPPSLNAPFIEYLNPRSTLAPPHPSPLAASLMNIDGVK 135 Query: 53 SVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIH----NGGLGDMKLDDMGS 107 SV++G DFITV K D +W H++P + +I E SG I++ G G+ ++ S Sbjct: 136 SVFYGVDFITVTKADDANWAHIKPEIFSLITEAVTSGAQIVNITEKTGASGEAP-EEEDS 194 Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASET 167 + E D VV IKE+L+ R+RPA+ DGGDI ++G+ DG+V L +RGAC C S++ T Sbjct: 195 LAYNEDDPEVVGMIKELLETRIRPAIQEDGGDIDYRGFEDGMVKLKLRGACRTCDSSTVT 254 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 LK G+ +L H++ EVK + V Sbjct: 255 LKNGIEGMLMHYIEEVKGVVQV 276 >gi|242802638|ref|XP_002484011.1| NifU-related protein [Talaromyces stipitatus ATCC 10500] gi|218717356|gb|EED16777.1| NifU-related protein [Talaromyces stipitatus ATCC 10500] Length = 290 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 79/194 (40%), Positives = 113/194 (58%), Gaps = 14/194 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL--------VEGAIHFSNAKEAEISPLASRIFSIPGIA 52 +FIQTE TPNP LKF+P VL +E S SPLA+++ ++ G++ Sbjct: 81 IFIQTESTPNPDALKFLPNHRVLPENFPTPFLEYLSPRSTLAPPHPSPLAAKLLNVEGVS 140 Query: 53 SVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG--- 108 SV++G DFITV K +W H++P V +I E SG+PI++ D G Sbjct: 141 SVFYGPDFITVTKQSDVNWAHIKPEVFSLITEVVTSGEPIVNTVERTSGAQDAQEGGGED 200 Query: 109 --DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + E D VV IKE+L+ R+RPA+ DGGDI F+G+ +GIV L +RGAC C S++ Sbjct: 201 TLSYNEEDDEVVGMIKELLETRIRPAIQEDGGDIEFRGFENGIVLLKLRGACRTCDSSTV 260 Query: 167 TLKYGVANILNHFV 180 TLK G+ ++L H+V Sbjct: 261 TLKNGIESMLMHYV 274 >gi|238880174|gb|EEQ43812.1| HIRA-interacting protein 5 [Candida albicans WO-1] Length = 262 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 78/191 (40%), Positives = 115/191 (60%), Gaps = 11/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAI-HFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT +TPN LKF+P +L + F + +EA SPLA ++FSI GI SV FG D Sbjct: 32 LFIQTSETPNEQALKFLPSIKILQDNQTKEFLSGREAASSPLALKLFSIDGIRSVMFGSD 91 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGD----MKLDDMGSGDFIESD 114 FIT+ K + +DW L+P + ++ E+ +G PI+ + + + +DM E D Sbjct: 92 FITIEKSNNFDWSLLKPEIFSILTEYLTNGTPILLEDNVDEYGNSLLTNDMAIN---EDD 148 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGV 172 VV IKE++ R+RPA+ DGGDI F + DG V+L ++GAC C S+S TLK G+ Sbjct: 149 DEVVSMIKELIFTRIRPAIQDDGGDIEFVNFNEEDGTVYLRLKGACRSCDSSSVTLKNGI 208 Query: 173 ANILNHFVPEV 183 ++L H++ EV Sbjct: 209 ESMLKHYIEEV 219 >gi|261194942|ref|XP_002623875.1| HIRA-interacting protein 5 [Ajellomyces dermatitidis SLH14081] gi|239587747|gb|EEQ70390.1| HIRA-interacting protein 5 [Ajellomyces dermatitidis SLH14081] Length = 318 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 120/200 (60%), Gaps = 12/200 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL--------VEGAIHFSNAKEAEISPLASRIFSIPGIA 52 +FIQTE TPN LKF P VL VE S SPLA+++ ++ G++ Sbjct: 82 IFIQTETTPNADALKFNPNHPVLPENFPTSFVEYLSPRSTLTPPYPSPLAAKLLNVDGVS 141 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH--NGGLGDMKLDDMGSGD 109 +V++G DFIT+ K +W H++P V +I E +G+PII+ G G ++ S Sbjct: 142 AVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTTGEPIINVAEAGAGGPPPEE-DSLS 200 Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 + E D VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C S++ TLK Sbjct: 201 YNEDDDEVVSMIKELLETRIRPAIQEDGGDIEFRGFEDGIVSLKLRGACRTCDSSTVTLK 260 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ ++L H++ EVK++ V Sbjct: 261 NGIESMLMHYIEEVKEVNHV 280 >gi|239610759|gb|EEQ87746.1| HIRA-interacting protein 5 [Ajellomyces dermatitidis ER-3] Length = 318 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 120/200 (60%), Gaps = 12/200 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL--------VEGAIHFSNAKEAEISPLASRIFSIPGIA 52 +FIQTE TPN LKF P VL VE S SPLA+++ ++ G++ Sbjct: 82 IFIQTETTPNADALKFNPNHPVLPENFPTSFVEYLSPRSTLTPPYPSPLAAKLLNVDGVS 141 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH--NGGLGDMKLDDMGSGD 109 +V++G DFIT+ K +W H++P V +I E +G+PII+ G G ++ S Sbjct: 142 AVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTTGEPIINVAEAGAGGPPPEE-DSLS 200 Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 + E D VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C S++ TLK Sbjct: 201 YNEDDDEVVSMIKELLETRIRPAIQEDGGDIEFRGFEDGIVSLKLRGACRTCDSSTVTLK 260 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ ++L H++ EVK++ V Sbjct: 261 NGIESMLMHYIEEVKEVNHV 280 >gi|327348799|gb|EGE77656.1| HIRA-interacting protein 5 [Ajellomyces dermatitidis ATCC 18188] Length = 318 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 120/200 (60%), Gaps = 12/200 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL--------VEGAIHFSNAKEAEISPLASRIFSIPGIA 52 +FIQTE TPN LKF P VL VE S SPLA+++ ++ G++ Sbjct: 82 IFIQTETTPNADALKFNPNHPVLPENFPTSFVEYLSPRSTLTPPYPSPLAAKLLNVDGVS 141 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH--NGGLGDMKLDDMGSGD 109 +V++G DFIT+ K +W H++P V +I E +G+PII+ G G ++ S Sbjct: 142 AVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTTGEPIINVAEAGAGGPPPEE-DSLS 200 Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 + E D VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C S++ TLK Sbjct: 201 YNEDDDEVVSMIKELLETRIRPAIQEDGGDIEFRGFEDGIVSLKLRGACRTCDSSTVTLK 260 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ ++L H++ EVK++ V Sbjct: 261 NGIESMLMHYIEEVKEVNHV 280 >gi|302927119|ref|XP_003054431.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256735372|gb|EEU48718.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 309 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 82/202 (40%), Positives = 120/202 (59%), Gaps = 13/202 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE TPNP LKF+P V+ EG I + N + SPLA+++ +I G+ Sbjct: 76 IFIQTEGTPNPDALKFLPNHRVVPEGISTPFIEYLNPRATISPPHPSPLAAKLMNIDGVT 135 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD-- 109 SV++G DFITV K +W H+RP + +I E SG+ +++ + + D Sbjct: 136 SVFYGADFITVTKAADANWAHIRPEIFALITEAITSGETLVNVAERREGETHPEAEEDSL 195 Query: 110 -FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASET 167 + E DS VV IKE+L+ R+RPA+ DGGDI F+G+ D G V L +RGAC C S++ T Sbjct: 196 AYNEDDSEVVGMIKELLETRIRPAIQEDGGDIDFRGFDDEGYVHLRLRGACRTCDSSTVT 255 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 LK G+ +L H++ EVK ++ V Sbjct: 256 LKNGIEGMLMHYIEEVKGVKQV 277 >gi|254455619|ref|ZP_05069048.1| nitrogen-fixing NifU domain protein [Candidatus Pelagibacter sp. HTCC7211] gi|207082621|gb|EDZ60047.1| nitrogen-fixing NifU domain protein [Candidatus Pelagibacter sp. HTCC7211] Length = 179 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 75/189 (39%), Positives = 118/189 (62%), Gaps = 16/189 (8%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MF+QTE TPNP +LKF+PG+ V G + K+ + L I SI G+ ++ G DF Sbjct: 1 MFVQTEVTPNPNSLKFLPGKKVSNSGPFEIT-KKDGIKNDLVRNILSINGVEGIFLGEDF 59 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPII--HNGGLGDMKLDDMGSGDFIESDSAV 117 I+V K D+ +W+ ++ V+ +I + + G + + D LD+ + Sbjct: 60 ISVNKNDEINWDEIKHIVISLINDFYSDGKEFVIDEDAEQSDDNLDE------------I 107 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 Q+I ++LD ++RPAVARDGGDI FK ++DG+V + ++G+CSGCPS++ TLK GV N+L Sbjct: 108 EQKIVKILDQKIRPAVARDGGDIKFKEFKDGVVKVQLQGSCSGCPSSTMTLKQGVQNLLC 167 Query: 178 HFVPEVKDI 186 H++PEVK++ Sbjct: 168 HYLPEVKEV 176 >gi|154291187|ref|XP_001546179.1| NifU-like protein [Botryotinia fuckeliana B05.10] gi|150847081|gb|EDN22274.1| NifU-like protein [Botryotinia fuckeliana B05.10] Length = 313 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 81/202 (40%), Positives = 122/202 (60%), Gaps = 15/202 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEAEI----SPLASRIFSIPGIA 52 +FIQTEDTPNP LKF+P ++ + I + N + SPLA+ + +I G+ Sbjct: 76 IFIQTEDTPNPDALKFLPNHPIIPQDVNSPFIEYLNPRSTLAPPYPSPLAASLMNIDGVK 135 Query: 53 SVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIH----NGGLGDMKLDDMGS 107 SV++G +FITV K + +W H++P V +I E SG I++ G G+ + +D S Sbjct: 136 SVFYGANFITVTKVEDANWAHIKPEVFSLITEAVTSGAQIVNITERTGASGEPEEED--S 193 Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASET 167 + E D VV IKE+L+ R+RPA+ DGGDI ++G+ DG+V L +RGAC C S++ T Sbjct: 194 LAYNEDDPEVVGMIKELLETRIRPAIQEDGGDIDYRGFEDGLVKLKLRGACRTCDSSTVT 253 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 LK G+ +L H++ EVK + V Sbjct: 254 LKNGIEGMLMHYIEEVKGVVQV 275 >gi|4836948|gb|AAD30650.1|AC006085_23 Similar to human CGI-33 protein [Arabidopsis thaliana] Length = 304 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 120/219 (54%), Gaps = 37/219 (16%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGI--------- 51 MFIQT+ TPNP++L F PG+ V+ G+ F N++ A SPLA IF+I GI Sbjct: 75 MFIQTQSTPNPSSLMFSPGKPVMEIGSADFPNSRSAMSSPLAKAIFAIDGIPRLLLQHTI 134 Query: 52 --------------------ASVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDP 90 V++G DF+TV K D W+ L+P + ++M+ + SG P Sbjct: 135 VSSSYNPCFVTKIVSVDAGVVRVFYGSDFVTVTKSDDVTWDILKPDIFAVVMDFYSSGQP 194 Query: 91 IIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDG 148 + + K + E DS V IKE+L+ R+RP+V DGGDI + G+ G Sbjct: 195 LFLDSQATAAKDTAIH-----EDDSETVAMIKELLETRIRPSVQDDGGDIEYCGFDTETG 249 Query: 149 IVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 IV L M+GACSGCPS+S TLK G+ N+L H+V EVK + Sbjct: 250 IVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSEVKGVE 288 >gi|171689560|ref|XP_001909720.1| hypothetical protein [Podospora anserina S mat+] gi|170944742|emb|CAP70853.1| unnamed protein product [Podospora anserina S mat+] Length = 323 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 80/207 (38%), Positives = 119/207 (57%), Gaps = 18/207 (8%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL--------VEGAIHFSNAKEAEISPLASRIFSIPGIA 52 +FIQTE TPN +LKF+P VL VE S SPLA+ + ++ G+ Sbjct: 77 IFIQTEPTPNANSLKFLPNHPVLPESISTPFVEYLSPRSTISPPYPSPLAANLMNVDGVT 136 Query: 53 SVYFGYDFITVGKDQYD-WEHLRPPVLGMIMEHFISGDPIIH---------NGGLGDMKL 102 SV++G DFITV K W H+RP + +I E SG P+++ + + + Sbjct: 137 SVFYGQDFITVTKSADAVWAHIRPEIFSLITEAITSGQPLVNISQQSASSPSTAEQEQES 196 Query: 103 DDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCP 162 + S ++ E+DS VV IKE+L+ R+RPA+ DGGDI F+G+ +GIV L +RGAC C Sbjct: 197 GERDSLEYDENDSEVVGMIKELLETRIRPAIQEDGGDIEFRGFENGIVMLKLRGACRTCD 256 Query: 163 SASETLKYGVANILNHFVPEVKDIRTV 189 S++ TLK G+ +L H++ EV+ + V Sbjct: 257 SSTVTLKNGIEGMLMHYIEEVQGVEQV 283 >gi|289620358|emb|CBI53216.1| unnamed protein product [Sordaria macrospora] Length = 290 Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 77/195 (39%), Positives = 112/195 (57%), Gaps = 29/195 (14%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +FIQTE+TPNP +LKF+P +++ +I G+ SV++G DF Sbjct: 78 IFIQTENTPNPDSLKFLPN-----------------------TKLMNIDGVTSVFYGTDF 114 Query: 61 ITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH-----NGGLGDMKLDDMGSGDFIESD 114 ITV K +W H+RP V +I E SG I++ G + D+ S + E+D Sbjct: 115 ITVTKSADANWAHIRPEVFALITETITSGQTIVNVVERREGEENTQESDEKDSLAYDEND 174 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 S VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C S++ TLK G+ Sbjct: 175 SEVVGMIKELLETRIRPAIQEDGGDIEFRGFEDGIVKLKLRGACRTCDSSTVTLKNGIEG 234 Query: 175 ILNHFVPEVKDIRTV 189 +L H++ EV+ + V Sbjct: 235 MLMHYIEEVQGVEQV 249 >gi|260951229|ref|XP_002619911.1| hypothetical protein CLUG_01070 [Clavispora lusitaniae ATCC 42720] gi|238847483|gb|EEQ36947.1| hypothetical protein CLUG_01070 [Clavispora lusitaniae ATCC 42720] Length = 243 Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 78/195 (40%), Positives = 121/195 (62%), Gaps = 13/195 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAI-HFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT +TPN LKF+P +L E F + +EA ISPLA ++FS+ G+ S+ G + Sbjct: 23 LFIQTAETPNENALKFLPSTKLLQENETREFLSGREAVISPLAMKLFSVDGVKSIMLGSN 82 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKL-DDMGSGDFIESDSA 116 FIT+ K D +W L+P + ++ E +G PII + D +L +DM F E D Sbjct: 83 FITIEKSTDDIEWAVLKPEIFSILTEFLTNGTPIISD----DAQLTNDM---QFSEDDDE 135 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVAN 174 +V IKE++ R+RPA+ DGGDI F + + G+V+L ++GAC C S+S TLK G+ + Sbjct: 136 IVSMIKELIFTRIRPAIQDDGGDIEFVSFEENTGVVYLRLKGACRSCDSSSVTLKNGIES 195 Query: 175 ILNHFVPEVKDIRTV 189 +L +++ EV+++R V Sbjct: 196 MLKYYIEEVQEVRPV 210 >gi|145228927|ref|XP_001388772.1| nifU-related protein [Aspergillus niger CBS 513.88] gi|134054866|emb|CAK36880.1| unnamed protein product [Aspergillus niger] Length = 330 Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 78/201 (38%), Positives = 118/201 (58%), Gaps = 12/201 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHF-------SNAKEAEISPLASRIFSIPGIA 52 +FIQTE+TPNP LKFIP VL E F S SPLA+ + ++ G+ Sbjct: 89 IFIQTENTPNPDALKFIPNHRVLPENFPTTFLEYLSPRSTLAPPHPSPLAASLLNVDGVT 148 Query: 53 SVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHN---GGLGDMKLDDMGSG 108 SV++G DFITV K +W H++P + +I + SG+ I++ G + + S Sbjct: 149 SVFYGPDFITVTKATDSNWAHIKPEIFSLITQAVTSGEAIVNTVAKTGESGQEGGESESL 208 Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 + E + V+ IKE+LD R+RPA+ DGGDI F+G+ +GIV L +RGAC C S++ TL Sbjct: 209 AYEEEEDEVIGMIKELLDTRIRPAIQEDGGDIEFRGFENGIVLLKLRGACRTCDSSTVTL 268 Query: 169 KYGVANILNHFVPEVKDIRTV 189 + G+ ++L H++ EV+ + V Sbjct: 269 RNGIESMLMHYIEEVQGVEQV 289 >gi|46107542|ref|XP_380830.1| hypothetical protein FG00654.1 [Gibberella zeae PH-1] Length = 304 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/204 (41%), Positives = 122/204 (59%), Gaps = 17/204 (8%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE+TPNP LKF+P V+ E I + N + SPLA+++ +I G+ Sbjct: 74 IFIQTENTPNPDALKFLPNHRVVPEEFSTPFIEYLNPRATISPPHPSPLAAKLMNIDGVT 133 Query: 53 SVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPII-----HNGGLGDMKLDDMG 106 SV++G DFITV K +W H+RP + +I E +G+ I+ G G +D Sbjct: 134 SVFYGADFITVTKAADANWAHIRPEIFALITEAITAGEQIVTISERREGEAGAPVEED-- 191 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSAS 165 S + E+DS VV IKE+L+ R+RPA+ DGGDI F+G+ D G V L +RGAC C S++ Sbjct: 192 SLAYNENDSEVVGMIKELLETRIRPAIQEDGGDIDFRGFDDEGYVHLRLRGACRTCDSST 251 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TLK G+ +L H++ EVK ++ V Sbjct: 252 VTLKNGIEGMLMHYIEEVKGVKQV 275 >gi|119189821|ref|XP_001245517.1| hypothetical protein CIMG_04958 [Coccidioides immitis RS] Length = 325 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 79/203 (38%), Positives = 120/203 (59%), Gaps = 14/203 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL--------VEGAIHFSNAKEAEISPLASRIFSIPGIA 52 +FIQTE TPN LKFIP VL +E S SPLA+++ ++ G++ Sbjct: 81 IFIQTEVTPNADALKFIPNYPVLPENFPAPFLEYLSPRSTLAAPHPSPLAAKLLNVDGVS 140 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGD-MKLDDMGSGD- 109 SV++G DFIT+ K +W H++P V +I E SG+ +++ + + + GSG+ Sbjct: 141 SVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTSGEQLVNTVAVAEGAQAGQEGSGEE 200 Query: 110 ---FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + E D VV I E+L+ R+RPA+ DGGDI F+G++DG V L +RGAC C S++ Sbjct: 201 AVEYNEEDEEVVGMINELLETRIRPAIQEDGGDIEFRGFKDGNVMLKLRGACRTCDSSTV 260 Query: 167 TLKYGVANILNHFVPEVKDIRTV 189 TLK G+ ++L H++ EVK + V Sbjct: 261 TLKNGIESMLMHYIEEVKSVTQV 283 >gi|303322791|ref|XP_003071387.1| NifU-like domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240111089|gb|EER29242.1| NifU-like domain containing protein [Coccidioides posadasii C735 delta SOWgp] Length = 325 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 79/203 (38%), Positives = 119/203 (58%), Gaps = 14/203 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL--------VEGAIHFSNAKEAEISPLASRIFSIPGIA 52 +FIQTE TPN LKFIP VL +E S SPLA+++ ++ G++ Sbjct: 81 IFIQTEVTPNADALKFIPNYPVLPENFPAPFLEYLSPRSTLAAPHPSPLAAKLLNVDGVS 140 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGD-MKLDDMGSGD- 109 SV++G DFIT+ K +W H++P V +I E SG+ +++ + + GSG+ Sbjct: 141 SVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTSGEQLVNTVAVAEGAHAGQEGSGEE 200 Query: 110 ---FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + E D VV I E+L+ R+RPA+ DGGDI F+G++DG V L +RGAC C S++ Sbjct: 201 AVEYNEEDEEVVGMINELLETRIRPAIQEDGGDIEFRGFKDGNVMLKLRGACRTCDSSTV 260 Query: 167 TLKYGVANILNHFVPEVKDIRTV 189 TLK G+ ++L H++ EVK + V Sbjct: 261 TLKNGIESMLMHYIEEVKSVTQV 283 >gi|76155328|gb|AAX26597.2| SJCHGC03039 protein [Schistosoma japonicum] Length = 222 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 80/177 (45%), Positives = 111/177 (62%), Gaps = 8/177 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +FIQ ++TPNP +LK+ PGQ VL G F + K+A SPLA ++F I G+ V+FG DF Sbjct: 53 LFIQAQETPNPNSLKYFPGQAVLGSGTRDFPSRKQAGSSPLARQLFRIEGVEQVFFGPDF 112 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 IT+ K+ ++W ++P V IM+ + SG P+I S E D V Sbjct: 113 ITITKNNDFEWAVIKPDVYATIMDFYSSGQPVIDEE-------KSQESDKPCEVDDETVL 165 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+LD R+RP V DGGDI++KG++DGIV L ++G+CS CPS+ TLK GV N+L Sbjct: 166 MIKELLDTRIRPTVQEDGGDIIYKGFKDGIVLLKLQGSCSSCPSSVVTLKNGVQNML 222 >gi|320032859|gb|EFW14809.1| NifU family protein [Coccidioides posadasii str. Silveira] Length = 325 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 79/203 (38%), Positives = 119/203 (58%), Gaps = 14/203 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL--------VEGAIHFSNAKEAEISPLASRIFSIPGIA 52 +FIQTE TPN LKFIP VL +E S SPLA+++ ++ G++ Sbjct: 81 IFIQTEVTPNADALKFIPNYPVLPENFPAPFLEYLSPRSTLAAPHPSPLAAKLLNVDGVS 140 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGD-MKLDDMGSGD- 109 SV++G DFIT+ K +W H++P V +I E SG+ +++ + + GSG+ Sbjct: 141 SVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTSGEQLVNTVAVAEGAHAGQEGSGEE 200 Query: 110 ---FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + E D VV I E+L+ R+RPA+ DGGDI F+G++DG V L +RGAC C S++ Sbjct: 201 AVEYNEEDEEVVGMINELLETRIRPAIQEDGGDIEFRGFKDGNVMLKLRGACRTCDSSTV 260 Query: 167 TLKYGVANILNHFVPEVKDIRTV 189 TLK G+ ++L H++ EVK + V Sbjct: 261 TLKNGIESMLMHYIEEVKSVTQV 283 >gi|296223650|ref|XP_002757718.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like [Callithrix jacchus] Length = 235 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 79/192 (41%), Positives = 114/192 (59%), Gaps = 13/192 (6%) Query: 2 FIQTEDTPNPATL-KFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 F+Q P PA +PG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 40 FVQRPLFPLPAAFCNPVPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 99 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDF-IESDSAV 117 ITV K+ + DW L+P + IM+ F SG P++ ++ SG+ E D V Sbjct: 100 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVT---------EETPSGEAGSEEDDEV 150 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 151 VAMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQ 210 Query: 178 HFVPEVKDIRTV 189 ++PEV+ + V Sbjct: 211 FYIPEVEGVEQV 222 >gi|42523787|ref|NP_969167.1| nifU related protein [Bdellovibrio bacteriovorus HD100] gi|39575994|emb|CAE80160.1| nifU related protein [Bdellovibrio bacteriovorus HD100] Length = 186 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 78/185 (42%), Positives = 114/185 (61%), Gaps = 11/185 (5%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TPNPAT+KF+ + V +G +EAE SPLA++IF P +SVY G DFITV K Sbjct: 12 EPTPNPATMKFLLHKKVTDQG-FDCPTVQEAERSPLAAKIFGFPWTSSVYVGPDFITVTK 70 Query: 66 -DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEV 124 D DWE L P+ G+I EH +P++ + + + + E+DS +V+ IK V Sbjct: 71 QDWVDWELLAHPLSGLIQEHLDRDEPVV---------VTFVEAEEDNENDSPMVRNIKSV 121 Query: 125 LDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVK 184 L+ +RP VA DGGDIVF Y + ++++ M+GACSGCPS++ TLK G+ + PE+ Sbjct: 122 LNREIRPVVALDGGDIVFHKYENNVLYIHMKGACSGCPSSTVTLKEGIEVRMKELFPEIV 181 Query: 185 DIRTV 189 ++ +V Sbjct: 182 EVVSV 186 >gi|154281411|ref|XP_001541518.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150411697|gb|EDN07085.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 279 Score = 144 bits (362), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 80/199 (40%), Positives = 116/199 (58%), Gaps = 10/199 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL--------VEGAIHFSNAKEAEISPLASRIFSIPGIA 52 +FIQTE TPN LKF P VL VE S SPLA+++ ++ G++ Sbjct: 44 IFIQTETTPNADALKFNPNHPVLPENFPTSFVEYLSPRSTLTPPYPSPLAAKLLNVDGVS 103 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH-NGGLGDMKLDDMGSGDF 110 +V++G DFIT+ K +W H++P V +I E +G+PII+ + S + Sbjct: 104 AVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTTGEPIINVAEAGAGAGPAEEDSLSY 163 Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 E D VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C S++ TLK Sbjct: 164 NEDDDEVVGMIKELLETRIRPAIQEDGGDIEFRGFEDGIVSLKLRGACRTCDSSTVTLKN 223 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ ++L H++ EVK + V Sbjct: 224 GIESMLMHYIEEVKGVNHV 242 >gi|240279904|gb|EER43409.1| HIRA-interacting protein [Ajellomyces capsulatus H143] gi|325093032|gb|EGC46342.1| HIRA-interacting protein [Ajellomyces capsulatus H88] Length = 314 Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 80/199 (40%), Positives = 116/199 (58%), Gaps = 10/199 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL--------VEGAIHFSNAKEAEISPLASRIFSIPGIA 52 +FIQTE TPN LKF P VL VE S SPLA+++ ++ G++ Sbjct: 79 IFIQTETTPNADALKFNPNHPVLPENFPTSFVEYLSPRSTLTPPYPSPLAAKLLNVDGVS 138 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH-NGGLGDMKLDDMGSGDF 110 +V++G DFIT+ K +W H++P V +I E +G+PII+ + S + Sbjct: 139 AVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTTGEPIINVAEAGAGAGPAEEDSLSY 198 Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 E D VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C S++ TLK Sbjct: 199 NEDDDEVVGMIKELLETRIRPAIQEDGGDIEFRGFEDGIVSLKLRGACRTCDSSTVTLKN 258 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ ++L H++ EVK + V Sbjct: 259 GIESMLMHYIEEVKGVNHV 277 >gi|221104801|ref|XP_002157169.1| PREDICTED: similar to HIRA interacting protein 5 [Hydra magnipapillata] Length = 267 Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 87/196 (44%), Positives = 119/196 (60%), Gaps = 16/196 (8%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFI+ +DTPNP +LKFIPG VL G + F SPLA ++F I G+ S++FG DF Sbjct: 59 MFIRVQDTPNPNSLKFIPGCKVLESGTVDFPTPSHGYRSPLARQLFRIKGVRSIFFGKDF 118 Query: 61 ITVGK---DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI--ESDS 115 IT+ K D W L+P + +IM+ F S P++ DD+ + D I E D+ Sbjct: 119 ITISKSDDDDVSWVLLKPDIYAVIMDFFASNLPVLT---------DDVPAQDTIAAEDDN 169 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVA 173 V IKE+LD R+RP V DGGDI+FKG+ GIV L ++G+CS CPS+S TLK GV Sbjct: 170 ETVLLIKELLDTRIRPTVQEDGGDIIFKGFDSVSGIVKLKLQGSCSSCPSSSVTLKNGVQ 229 Query: 174 NILNHFVPEVKDIRTV 189 N++ ++PEV + V Sbjct: 230 NMMQFYIPEVTGVEEV 245 >gi|225563079|gb|EEH11358.1| HIRA-interacting protein [Ajellomyces capsulatus G186AR] Length = 314 Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 80/199 (40%), Positives = 116/199 (58%), Gaps = 10/199 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL--------VEGAIHFSNAKEAEISPLASRIFSIPGIA 52 +FIQTE TPN LKF P VL VE S SPLA+++ ++ G++ Sbjct: 79 IFIQTETTPNADALKFNPNHPVLPENFPTSFVEYLSPRSTLTPPYPSPLAAKLLNVDGVS 138 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH-NGGLGDMKLDDMGSGDF 110 +V++G DFIT+ K +W H++P V +I E +G+PII+ + S + Sbjct: 139 AVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTTGEPIINVAEAGAGAGPAEEDSLSY 198 Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 E D VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C S++ TLK Sbjct: 199 NEDDDEVVGMIKELLETRIRPAIQEDGGDIEFRGFEDGIVSLKLRGACRTCDSSTVTLKN 258 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ ++L H++ EVK + V Sbjct: 259 GIESMLMHYIEEVKGVNHV 277 >gi|116199405|ref|XP_001225514.1| hypothetical protein CHGG_07858 [Chaetomium globosum CBS 148.51] gi|88179137|gb|EAQ86605.1| hypothetical protein CHGG_07858 [Chaetomium globosum CBS 148.51] Length = 337 Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 83/211 (39%), Positives = 121/211 (57%), Gaps = 22/211 (10%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE TPN LKF+P +L G I + N + SPLA+++ +I G+ Sbjct: 86 IFIQTESTPNADALKFLPNHQILPAGLTTPFIEYLNPRATIAPPHPSPLAAQLMNIDGVT 145 Query: 53 SVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIH-------------NGGLG 98 +V++G DFITV K +W H+RP V +I E SG PI++ G G Sbjct: 146 AVFYGADFITVTKAADANWAHVRPEVFALITEAITSGQPIVNVAERKEGGGGVGGAAGEG 205 Query: 99 DMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGAC 158 + ++ S + E+DS VV IKE+L+ RVRPA+ DGGDI F+G+ +G V L +RGAC Sbjct: 206 EGAAEEKDSLAYDENDSEVVGMIKELLETRVRPAIQEDGGDIEFRGFENGYVMLKLRGAC 265 Query: 159 SGCPSASETLKYGVANILNHFVPEVKDIRTV 189 C S++ TLK G+ +L H++ EV+ + V Sbjct: 266 RTCDSSTVTLKNGIEGMLMHYIEEVQGVHQV 296 >gi|323451223|gb|EGB07101.1| hypothetical protein AURANDRAFT_54041 [Aureococcus anophagefferens] Length = 232 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 79/198 (39%), Positives = 115/198 (58%), Gaps = 15/198 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE-----GAIHFSNAKEAEI-SPLASRIFSIPGIASV 54 +FIQ E TPNP +LKF+P Q VL E HF + SPLA ++F+I G+ + Sbjct: 18 VFIQVEKTPNPFSLKFVPSQAVLGEEHQDKSGFHFHRGDTEYLRSPLAKKLFAIDGVTGI 77 Query: 55 YFGYDFITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIES 113 + DF+TV K++ W ++P V G IM+ + G P + + L + Sbjct: 78 FLARDFVTVSKNEDGAWATIKPHVFGHIMDFYAEGLPAVEDA------LPAASDTLITDD 131 Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYG 171 DS VV IKE+++ R+RPAV DGGDI F+G+ + G+V + + G+C GCPS+S TL+ G Sbjct: 132 DSEVVAMIKELVEARIRPAVQEDGGDIFFRGFDEATGVVKVELAGSCVGCPSSSVTLRNG 191 Query: 172 VANILNHFVPEVKDIRTV 189 V N+L H++ EVK I V Sbjct: 192 VENMLMHYIAEVKAIENV 209 >gi|108761437|ref|YP_634156.1| NifU family protein [Myxococcus xanthus DK 1622] gi|108465317|gb|ABF90502.1| NifU family protein [Myxococcus xanthus DK 1622] Length = 188 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 73/189 (38%), Positives = 117/189 (61%), Gaps = 7/189 (3%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEI-SPLASRIFSIPGIASVYFGYDFI 61 IQ E TPNP+TLK++ + +L GA++F+N ++A+ SPLA ++ + G+ +V G +F+ Sbjct: 5 IQLEWTPNPSTLKYVVDRRLLAGGAVNFTNPEDAQAKSPLARKLMDVRGVTAVMIGTNFV 64 Query: 62 TVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 TV K ++ +W+ L V+ + H + +P++ L + SG V R Sbjct: 65 TVTKGEEGEWDELNDEVMSALDTHLTANEPVVDEAALAAAREAAGPSGG-----GTVEGR 119 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I+++LDN +RPAVA DGGDI + DGIV+L M+GAC+GCPS++ TLK G+ L + Sbjct: 120 IQDILDNEIRPAVAMDGGDITLDRFEDGIVYLHMKGACAGCPSSTATLKMGIEGRLREMI 179 Query: 181 PEVKDIRTV 189 PEV ++ +V Sbjct: 180 PEVLEVVSV 188 >gi|190345080|gb|EDK36900.2| hypothetical protein PGUG_00997 [Meyerozyma guilliermondii ATCC 6260] Length = 236 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 74/187 (39%), Positives = 113/187 (60%), Gaps = 15/187 (8%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT DTPN LKF+P +L E + F + +EA SPLA ++FS+ GI SV FG + Sbjct: 27 LFIQTADTPNEHALKFLPSMSILKENETLEFLSGREAARSPLAVKLFSVDGIKSVMFGSN 86 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGG--LGDMKLDDMGSGDFIESDS 115 FIT+ K + W ++P + ++ EH +G P+I++ DM+++ E D Sbjct: 87 FITIEKSANSNQWAVMKPEIFSILTEHLTTGAPVINDEYELSNDMEIN--------EDDD 138 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVA 173 VV IKE++ R+RPA+ DGGDI F + + G V+L ++GAC C S+S TLK G+ Sbjct: 139 EVVAMIKELIFTRIRPAIQEDGGDIEFAKFDEDSGTVYLKLKGACRSCESSSVTLKNGIE 198 Query: 174 NILNHFV 180 ++L H++ Sbjct: 199 SMLKHYI 205 >gi|320585764|gb|EFW98443.1| NifU [Grosmannia clavigera kw1407] Length = 370 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 82/210 (39%), Positives = 119/210 (56%), Gaps = 26/210 (12%) Query: 5 TEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEAEI-----SPLASRIFSIPGIASVY 55 TE TPN +KF+P VL EG I + + + A I SPLA+++ ++ G+ +V+ Sbjct: 121 TESTPNADAIKFLPNHQVLPEGIASPFIEYLSPR-ATIAPPYPSPLAAQLMNVDGVTAVF 179 Query: 56 FGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDM----GSG-- 108 +G DFITV K +W H+RP V +I E SG I+ G + + G G Sbjct: 180 YGSDFITVTKATDANWAHIRPEVFALITEAITSGQAIVRPSATGSAGAEGVDGTHGEGAE 239 Query: 109 ---------DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACS 159 + E+DS VV IKE+L+ R+RPA+ DGGDI F+G+ DG V L +RGAC Sbjct: 240 AEAVHEDSLQYNENDSEVVGMIKELLETRIRPAIQEDGGDIEFRGFEDGEVLLKLRGACR 299 Query: 160 GCPSASETLKYGVANILNHFVPEVKDIRTV 189 C S++ TLK G+ ++L H++ EVK +R V Sbjct: 300 TCDSSTVTLKNGIESMLMHYIEEVKVVRQV 329 >gi|296817809|ref|XP_002849241.1| HIRA-interacting protein 5 [Arthroderma otae CBS 113480] gi|238839694|gb|EEQ29356.1| HIRA-interacting protein 5 [Arthroderma otae CBS 113480] Length = 304 Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 78/203 (38%), Positives = 120/203 (59%), Gaps = 14/203 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHF-------SNAKEAEISPLASRIFSIPGIA 52 +FI+T+ TPN LKF P VL EG + F S + SPLA+++ ++ G+ Sbjct: 72 IFIETDTTPNADALKFRPNHPVLPEGFPVSFLEYLTPRSTLQPPYPSPLAAKLLNVDGVV 131 Query: 53 SVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIH-----NGGLGDMKLDDMG 106 SV+FG DFITV KD +W H++P V +I E +G+ +I+ G G + + Sbjct: 132 SVFFGSDFITVTKDSDANWAHIKPEVFSLITEAITTGEALINIVDVRPGKEGAEEAEMEE 191 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + + E D +V I+E+L+ R+RPA+ DGGDI F+G+ +G V L +RGAC C S++ Sbjct: 192 AVRYNEEDEEIVGMIQELLETRIRPAIQEDGGDIEFRGFENGNVMLKLRGACRTCDSSTV 251 Query: 167 TLKYGVANILNHFVPEVKDIRTV 189 TLK G+ ++L H++ EVK + V Sbjct: 252 TLKNGIESMLMHYIEEVKSVTQV 274 >gi|254566581|ref|XP_002490401.1| Protein involved in iron metabolism in mitochondria [Pichia pastoris GS115] gi|238030197|emb|CAY68120.1| Protein involved in iron metabolism in mitochondria [Pichia pastoris GS115] Length = 249 Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 76/195 (38%), Positives = 112/195 (57%), Gaps = 11/195 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA-IHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT+ TPN LKF+P +L E I F N ++A SPLA ++F I G+ ++ G+D Sbjct: 21 LFIQTQTTPNDDALKFLPSMKILPEQTTIEFLNGRQAFKSPLALKLFGIDGVKTIMIGHD 80 Query: 60 FITV-GKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA-- 116 FITV K Q DW L+P + ++ E +G P+ L + D +E D Sbjct: 81 FITVEKKTQDDWSLLKPEIFAVLTESLNNGTPV-----LNEQHQSDANDQALLEEDDEDE 135 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFK--GYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 VV +KE++ R+RPA+ DGGDI F Y G V+L +RGAC C S+S TLK G+ + Sbjct: 136 VVSMVKELIFTRIRPAIQDDGGDIEFVRFEYETGTVYLRLRGACRSCSSSSITLKNGIES 195 Query: 175 ILNHFVPEVKDIRTV 189 +L H++ EV+ + + Sbjct: 196 MLKHYIEEVEAVEQI 210 >gi|146423384|ref|XP_001487621.1| hypothetical protein PGUG_00997 [Meyerozyma guilliermondii ATCC 6260] Length = 236 Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 74/187 (39%), Positives = 113/187 (60%), Gaps = 15/187 (8%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT DTPN LKF+P +L E + F + +EA SPLA ++FS+ GI SV FG + Sbjct: 27 LFIQTADTPNEHALKFLPSMSILKENETLEFLSGREAARSPLAVKLFSVDGIKSVMFGSN 86 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGG--LGDMKLDDMGSGDFIESDS 115 FIT+ K + W ++P + ++ EH +G P+I++ DM+++ E D Sbjct: 87 FITIEKLANSNQWAVMKPEIFLILTEHLTTGAPVINDEYELSNDMEIN--------EDDD 138 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVA 173 VV IKE++ R+RPA+ DGGDI F + + G V+L ++GAC C S+S TLK G+ Sbjct: 139 EVVAMIKELIFTRIRPAIQEDGGDIEFAKFDEDSGTVYLKLKGACRSCESSSVTLKNGIE 198 Query: 174 NILNHFV 180 ++L H++ Sbjct: 199 SMLKHYI 205 >gi|219130127|ref|XP_002185224.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217403403|gb|EEC43356.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 195 Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 77/197 (39%), Positives = 116/197 (58%), Gaps = 18/197 (9%) Query: 1 MFIQTEDTPNPATLKFIP-GQVVLVEG-------AIHFSNAKEAEISPLASRIFSIPGIA 52 +FIQT DTPNP +LKF+P G VL + AKE SPLA +F + G+ Sbjct: 6 IFIQTADTPNPESLKFVPTGVAVLTDNPDGNGFYVTKNDPAKEILRSPLAKSLFDVEGVK 65 Query: 53 SVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI 111 +VY G DF+TV K ++ W+ LRP + ++M S P + +++ ++ + Sbjct: 66 AVYLGGDFVTVTKYAEHKWKILRPQLFDVLMNWADSEKPAL-------LEMPEITDTTIM 118 Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLK 169 E D +V IKE++++R+RPAV DGGDI + + + GIV + + G+C GCPS+S TLK Sbjct: 119 EDDDEIVAMIKELIESRIRPAVQEDGGDIRYVSFEEETGIVTVELAGSCVGCPSSSVTLK 178 Query: 170 YGVANILNHFVPEVKDI 186 GV N+L H++PEV + Sbjct: 179 QGVENMLMHYIPEVSSV 195 >gi|302657114|ref|XP_003020287.1| hypothetical protein TRV_05641 [Trichophyton verrucosum HKI 0517] gi|291184105|gb|EFE39669.1| hypothetical protein TRV_05641 [Trichophyton verrucosum HKI 0517] Length = 304 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 77/203 (37%), Positives = 117/203 (57%), Gaps = 14/203 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHF-------SNAKEAEISPLASRIFSIPGIA 52 +FI+T+ TPN LKF P VL EG + F S + SPLA+++ ++ G Sbjct: 72 IFIETDTTPNADALKFRPNHPVLPEGFPVSFLEYLTPRSTLQPPYPSPLAAKLLNVDGAV 131 Query: 53 SVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIH-----NGGLGDMKLDDMG 106 SV+FG DFITV KD +W H++P + +I E G+ +++ G G + Sbjct: 132 SVFFGSDFITVTKDSDANWAHIKPEIFSLITEAITRGEALVNVVDVRQGKEGAEGAEAEE 191 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + + E D VV I+E+L+ R+RPA+ DGGDI F+G+ +G V L +RGAC C S++ Sbjct: 192 AVRYNEEDEEVVGMIQELLETRIRPAIQEDGGDIEFRGFENGNVLLKLRGACRTCDSSTV 251 Query: 167 TLKYGVANILNHFVPEVKDIRTV 189 TLK G+ ++L H++ EVK + V Sbjct: 252 TLKNGIESMLMHYIEEVKSVTQV 274 >gi|299469630|emb|CBN76484.1| conserved unknown protein [Ectocarpus siliculosus] Length = 282 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/195 (41%), Positives = 116/195 (59%), Gaps = 14/195 (7%) Query: 2 FIQTEDTPNPATLKFIPGQVVLVE---GAIHFS-NAKEAEISPLASRIFSIPGIASVYFG 57 FIQTE TPNP +LKF+PG+ VL ++F+ + +E SPLA + S+ G+A V+ G Sbjct: 66 FIQTEPTPNPNSLKFLPGRPVLPAEHGTGVYFTPDDREKSQSPLAVALLSLEGVAGVFLG 125 Query: 58 YDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 DFIT+ K D+ W ++P V G IM+ F G P++ + + ++ D Sbjct: 126 TDFITISKHDEGGWTLMKPVVFGEIMDFFAEGKPVM-------LAEPVVTDTTILDDDDE 178 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVAN 174 VV IKE+L RVRPAV DGGDI ++G+ G V + + G+C GCPS++ TLK GV Sbjct: 179 VVAMIKELLQERVRPAVQEDGGDIFYRGFDPNTGTVNVQLAGSCVGCPSSTVTLKNGVEK 238 Query: 175 ILNHFVPEVKDIRTV 189 +L H++PEV + V Sbjct: 239 MLMHYIPEVTAVNAV 253 >gi|326475115|gb|EGD99124.1| NifU domain-containing protein [Trichophyton tonsurans CBS 112818] gi|326482250|gb|EGE06260.1| scaffold protein Nfu/NifU [Trichophyton equinum CBS 127.97] Length = 304 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 78/203 (38%), Positives = 117/203 (57%), Gaps = 14/203 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHF-------SNAKEAEISPLASRIFSIPGIA 52 +FI+T+ TPN LKF P VL EG + F S + SPLA+++ ++ G Sbjct: 72 IFIETDTTPNADALKFRPNHPVLPEGFPVSFLEYLTPRSTLQPPYPSPLAAKLLNVDGAV 131 Query: 53 SVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIH-----NGGLGDMKLDDMG 106 SV+FG DFITV KD +W H++P V +I E G+ +++ G G + Sbjct: 132 SVFFGSDFITVTKDSDANWAHIKPEVFSLITEAITRGEALVNVVDVRPGKEGAEGAEAEE 191 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + + E D VV I+E+L+ R+RPA+ DGGDI F+G+ +G V L +RGAC C S++ Sbjct: 192 AVRYNEEDEEVVGMIQELLETRIRPAIQEDGGDIEFRGFENGNVLLKLRGACRTCDSSTV 251 Query: 167 TLKYGVANILNHFVPEVKDIRTV 189 TLK G+ ++L H++ EVK + V Sbjct: 252 TLKNGIESMLMHYIEEVKSVTQV 274 >gi|315052166|ref|XP_003175457.1| hypothetical protein MGYG_02982 [Arthroderma gypseum CBS 118893] gi|311340772|gb|EFQ99974.1| hypothetical protein MGYG_02982 [Arthroderma gypseum CBS 118893] Length = 301 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 75/202 (37%), Positives = 116/202 (57%), Gaps = 13/202 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHF-------SNAKEAEISPLASRIFSIPGIA 52 +FI+T+ TPN LKF P VL EG + F S + SPLA+++ ++ G Sbjct: 72 IFIETDTTPNADALKFRPNHPVLPEGFPVSFLEYLNPRSTLQPPYPSPLAAKLLNVDGAV 131 Query: 53 SVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIH----NGGLGDMKLDDMGS 107 SV+FG DFITV KD +W H++P + +I E G+ +++ G + + Sbjct: 132 SVFFGSDFITVTKDSDANWAHIKPEIFSLITEAITRGEALVNVVDVRPGKEGAEEVGEEA 191 Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASET 167 + E D +V I+E+L+ R+RPA+ DGGDI F+G+ +G V L +RGAC C S++ T Sbjct: 192 VRYNEEDEEIVGMIQELLETRIRPAIQEDGGDIEFRGFENGNVLLKLRGACRTCDSSTVT 251 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 LK G+ ++L H++ EVK + V Sbjct: 252 LKNGIESMLMHYIEEVKSVTQV 273 >gi|300175875|emb|CBK21871.2| Scaffold protein Isu1 [Blastocystis hominis] Length = 271 Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 75/193 (38%), Positives = 115/193 (59%), Gaps = 15/193 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA-----IHFSNAKEAEISPLASRIFSIPGIASVY 55 +F+Q ++TPNP KF+P + V + + F+ KEA SPLAS++F IP + SV Sbjct: 28 LFVQIKETPNPDVQKFLPTPSISVLPSEFGHTMEFNTTKEARASPLASKLFDIPEVKSVL 87 Query: 56 FGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGS--GDFIE 112 G D+I V + + +WE+L P + I++ F S D H + +K D++ + + Sbjct: 88 LGNDYICVTRQKGVEWEYLNPAIFHTILDFFSSPD---HEAVV--LKPDEIPEDPNEIKD 142 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKY 170 +DS VV+ IKE+LD R+RP + DGGDI F + + G + + M GAC GC S+S TLK Sbjct: 143 TDSEVVRLIKELLDTRIRPRIKADGGDIFFHTFDESSGELLVRMTGACKGCASSSVTLKQ 202 Query: 171 GVANILNHFVPEV 183 GV ++ H++PEV Sbjct: 203 GVEQMMKHYIPEV 215 >gi|50419691|ref|XP_458373.1| DEHA2C15796p [Debaryomyces hansenii CBS767] gi|49654039|emb|CAG86455.1| DEHA2C15796p [Debaryomyces hansenii] Length = 246 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 75/194 (38%), Positives = 112/194 (57%), Gaps = 11/194 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAI-HFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT +TPN LKF+P ++ E F + +EA SPLA ++FSI GI S+ FG + Sbjct: 29 LFIQTMETPNEHALKFLPSMQIMKENETREFLSGREAACSPLALKLFSIDGIKSIMFGSN 88 Query: 60 FITVGKDQYD--WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 FIT+ K D W L+P + ++ E +G PI++ DDM + E D Sbjct: 89 FITIEKANEDLHWSLLKPEIFSILTEFLNNGTPILNEES---ELTDDM---EISEDDDET 142 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE++ R+RPA+ DGGDI F + + G V+L ++GAC C S+S TLK G+ ++ Sbjct: 143 VTMIKELIFTRIRPAIQDDGGDIEFVSFAEDNGTVYLRLKGACRSCDSSSVTLKNGIESM 202 Query: 176 LNHFVPEVKDIRTV 189 L +++ EV + V Sbjct: 203 LKYYIEEVTTVEQV 216 >gi|116781621|gb|ABK22181.1| unknown [Picea sitchensis] Length = 181 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 14/168 (8%) Query: 26 GAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEH 84 G+ F NA+ A SPLA ++ I G+A ++FG DFITV K ++ W+ L+P + IM+ Sbjct: 4 GSADFPNARVAMGSPLAKSLYGIDGVARIFFGSDFITVTKSEEVSWDILKPEIFAAIMDF 63 Query: 85 FISGDPII---HNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIV 141 + SG P+ +G D ++ E D V IKE+L+ R+RPAV DGGDI Sbjct: 64 YSSGQPLFLDSKSGAPTDTAIN--------EDDDETVAMIKELLETRIRPAVQDDGGDIE 115 Query: 142 FKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 + G+ G+V L M+GACSGCPS+S TLK G+ N+L H+VPEVK + Sbjct: 116 YCGFDPETGVVKLKMQGACSGCPSSSLTLKSGIENMLMHYVPEVKGVE 163 >gi|302500846|ref|XP_003012416.1| hypothetical protein ARB_01375 [Arthroderma benhamiae CBS 112371] gi|291175974|gb|EFE31776.1| hypothetical protein ARB_01375 [Arthroderma benhamiae CBS 112371] Length = 264 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/203 (37%), Positives = 116/203 (57%), Gaps = 14/203 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHF-------SNAKEAEISPLASRIFSIPGIA 52 +FI+T+ TPN LKF P VL EG + F S + SPLA+++ ++ G Sbjct: 32 IFIETDTTPNADALKFRPNHPVLPEGFPVSFLEYLTPRSTLQPPYPSPLAAKLLNVDGAV 91 Query: 53 SVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIH-----NGGLGDMKLDDMG 106 SV+FG DFITV KD +W H++P + +I E G+ +++ G G Sbjct: 92 SVFFGSDFITVTKDSDANWAHIKPEIFSLITEAITRGEALVNVVDVRQGKEGAEGAGAEE 151 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + + E D VV I+E+L+ R+RPA+ DGGDI F+G+ +G V L +RGAC C S++ Sbjct: 152 AVRYNEEDEEVVGMIQELLETRIRPAIQEDGGDIEFRGFENGNVLLKLRGACRTCDSSTV 211 Query: 167 TLKYGVANILNHFVPEVKDIRTV 189 TLK G+ ++L H++ EVK + V Sbjct: 212 TLKNGIESMLMHYIEEVKSVTQV 234 >gi|260949769|ref|XP_002619181.1| hypothetical protein CLUG_00340 [Clavispora lusitaniae ATCC 42720] gi|238846753|gb|EEQ36217.1| hypothetical protein CLUG_00340 [Clavispora lusitaniae ATCC 42720] Length = 237 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 73/190 (38%), Positives = 113/190 (59%), Gaps = 10/190 (5%) Query: 4 QTEDTPNPATLKFIPGQVV---LVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +T TPN LKF+ + L FS + +A SPLA ++F + G+ SV G+DF Sbjct: 17 KTYPTPNENALKFVSPEAEISPLKNKTFEFSTSLQAVHSPLALKLFKLNGVKSVMIGHDF 76 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGD-PIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +TV K D +W HLRP V+ ++ S D P+I + + D + + E+DS VV Sbjct: 77 LTVNKLDHVNWAHLRPEVVKLLDSFLTSKDEPVITKELIQQGENDSLSAS---ENDSEVV 133 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE++D R+RPA+ DGGDI +K + + G VFL ++GAC C ++ +TLK G+ ++L Sbjct: 134 SMIKELIDTRIRPAIQDDGGDIEYKAFDEETGTVFLKLQGACKSCSASEDTLKGGIESML 193 Query: 177 NHFVPEVKDI 186 H++ EVK++ Sbjct: 194 MHYIEEVKEV 203 >gi|258565761|ref|XP_002583625.1| HIRA-interacting protein 5 [Uncinocarpus reesii 1704] gi|237907326|gb|EEP81727.1| HIRA-interacting protein 5 [Uncinocarpus reesii 1704] Length = 316 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 76/203 (37%), Positives = 117/203 (57%), Gaps = 14/203 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL--------VEGAIHFSNAKEAEISPLASRIFSIPGIA 52 +FIQTE TPN LKFIP VL +E S SPLA+++F++ G++ Sbjct: 72 IFIQTETTPNADALKFIPNFTVLPKDFPTPFLEYLSPRSTLAPPHPSPLAAKLFNVDGVS 131 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGD-----MKLDDMG 106 SV++G DFIT+ K W H++P V +I E SG+ +++ D + Sbjct: 132 SVFYGPDFITITKAGDASWAHIKPEVFSLITEAVTSGEQLVNTVAAKDGAEPGQEGSAEE 191 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + ++ E D +V I+E+L+ R+RPA+ DGGDI F+G++DG V L +RGAC C S++ Sbjct: 192 APEYAEEDEEIVGMIQELLETRIRPAIQEDGGDIEFRGFKDGNVMLKLRGACRTCDSSTV 251 Query: 167 TLKYGVANILNHFVPEVKDIRTV 189 TLK G+ ++L H++ EV + V Sbjct: 252 TLKNGIESMLMHYIEEVTSVTQV 274 >gi|255726880|ref|XP_002548366.1| hypothetical protein CTRG_02663 [Candida tropicalis MYA-3404] gi|240134290|gb|EER33845.1| hypothetical protein CTRG_02663 [Candida tropicalis MYA-3404] Length = 261 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 77/194 (39%), Positives = 113/194 (58%), Gaps = 9/194 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAI-HFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT +TPN LKF+P +L E F + +EA SPLA ++FSI GI SV +G D Sbjct: 32 LFIQTSETPNEQALKFLPSIQILGENQTKEFLSGREAACSPLAVKLFSIDGIKSVMYGSD 91 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPII-HNGGLGDMKLDDMGSGDFIESDSAV 117 FIT+ K + W L+P + ++ E+ +G PI+ N G + D D E V Sbjct: 92 FITIEKSENIAWPLLKPEIFSILTEYLTNGSPILLENDKNGIITDDMAFDEDDDE----V 147 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE++ R+RPA+ DGGDI F + +G V+L ++GAC C S+S TLK G+ ++ Sbjct: 148 VSMIKELIFTRIRPAIQDDGGDIEFIKFEPDNGTVYLKLKGACRSCDSSSVTLKNGIESM 207 Query: 176 LNHFVPEVKDIRTV 189 L H++ EV + + Sbjct: 208 LKHYIEEVNSVEPI 221 >gi|256419768|ref|YP_003120421.1| nitrogen-fixing NifU domain protein [Chitinophaga pinensis DSM 2588] gi|256034676|gb|ACU58220.1| nitrogen-fixing NifU domain protein [Chitinophaga pinensis DSM 2588] Length = 198 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 72/185 (38%), Positives = 107/185 (57%), Gaps = 3/185 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I TE TPNP T+KF+ +++ I F + A+ SPLA +FS P I V+ +FIT Sbjct: 11 IYTEMTPNPETMKFVANKLLYPGKHIDFPDEASAKPSPLAVELFSFPFIRGVFIMANFIT 70 Query: 63 VGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 + K DW + P + + E+ P+I+ + K + + D+ VV+RI Sbjct: 71 LTKTPDTDWNDIIPTIKAFLKEYLEDNRPVINEEEIVVTKA--AATNEVSADDTDVVKRI 128 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP 181 KE+L+N V+PAV DGG I FK Y DG V L ++G+CSGCPS+ TLK G+ ++ +P Sbjct: 129 KELLENYVKPAVEMDGGAIQFKDYDDGTVTLMLQGSCSGCPSSMITLKAGIEGMMKRMIP 188 Query: 182 EVKDI 186 EVK++ Sbjct: 189 EVKEV 193 >gi|218659803|ref|ZP_03515733.1| Scaffold protein Nfu/NifU [Rhizobium etli IE4771] Length = 107 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 57/97 (58%), Positives = 76/97 (78%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPAT KF+PG+VV+ G F +A+EA+ SPLA+R+F IPG+ VYFGYDF Sbjct: 9 MFIQTEATPNPATQKFLPGKVVMENGTAEFRSAEEAQASPLAARLFEIPGVTGVYFGYDF 68 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGL 97 I+V KD +W+HL+P +LG IMEHF+SG P++ + + Sbjct: 69 ISVSKDDVEWQHLKPAILGSIMEHFMSGKPVMGDASI 105 >gi|148666783|gb|EDK99199.1| mCG130855, isoform CRA_c [Mus musculus] Length = 219 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 95/156 (60%), Gaps = 7/156 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 69 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 128 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K ++ DW L+P + IM+ F SG P++ + G E D VV Sbjct: 129 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVT-----EETPPPPGEAGSSEEDDEVV 183 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSM 154 IKE+LD R+RP V DGGD++++G+ DGIV L + Sbjct: 184 AMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKL 219 >gi|295673142|ref|XP_002797117.1| LiPid Depleted family member [Paracoccidioides brasiliensis Pb01] gi|226282489|gb|EEH38055.1| LiPid Depleted family member [Paracoccidioides brasiliensis Pb01] Length = 317 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 79/200 (39%), Positives = 114/200 (57%), Gaps = 15/200 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHF-------SNAKEAEISPLASRIFSIPGIA 52 +FIQTE+TPN LKFIP VL E F S SPLAS++ ++ G++ Sbjct: 82 IFIQTENTPNADALKFIPNHSVLPENFPTTFLEYLSPRSTLAPPYPSPLASKLLNVDGVS 141 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPI--IHNGGLGDMKLDDMGSGD 109 +V++G DFIT+ K +W H++P V +I E +GDPI I G G ++ S Sbjct: 142 AVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTAGDPIVTISEAGAGSQAQEE-DSLS 200 Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 + E D VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C S++ K Sbjct: 201 YNEDDDEVVGMIKELLETRIRPAIQEDGGDIEFRGFDDGIVNLKLRGACRTCDSST---K 257 Query: 170 YGVANILNHFVPEVKDIRTV 189 V + H +++++ V Sbjct: 258 LFVPTLRGHAEISIEEVKGV 277 >gi|241950625|ref|XP_002418035.1| conserved hypothetical protein [Candida dubliniensis CD36] gi|223641374|emb|CAX43334.1| conserved hypothetical protein [Candida dubliniensis CD36] Length = 237 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 70/190 (36%), Positives = 113/190 (59%), Gaps = 14/190 (7%) Query: 4 QTEDTPNPATLKFIPGQVVLV---EGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +T TPNP LKFI + ++ + F+ +A SPLA +F IPG+ SV GYDF Sbjct: 19 KTLPTPNPNALKFISPECNILPMEDKTFEFTTTLQAIHSPLALTLFKIPGVKSVMLGYDF 78 Query: 61 ITVGKDQY-DWEHLRPPVLGMIMEHFISGD-PIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +TV K Y +W +LRP ++ + E S P+I + + + + E +S ++ Sbjct: 79 LTVNKQDYINWANLRPEIVEHLDEFLTSKKHPVITKELVDEAQRE-------AEEESELI 131 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+++ R+RPA+ DGGDI KG+ + G VF+ ++GAC C ++ +TLK+G+ ++L Sbjct: 132 SMIKELIETRIRPAIQDDGGDIELKGFDEETGTVFVKLQGACKSCSASEDTLKHGIESML 191 Query: 177 NHFVPEVKDI 186 H+V EVK++ Sbjct: 192 MHYVEEVKEV 201 >gi|327299030|ref|XP_003234208.1| NifU domain-containing protein [Trichophyton rubrum CBS 118892] gi|326463102|gb|EGD88555.1| NifU domain-containing protein [Trichophyton rubrum CBS 118892] Length = 288 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 74/194 (38%), Positives = 112/194 (57%), Gaps = 14/194 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHF-------SNAKEAEISPLASRIFSIPGIA 52 +FI+T+ TPN LKF P VL EG + F S + SPLA+++ ++ G Sbjct: 72 IFIETDTTPNADALKFRPNHPVLPEGFPVSFLEYLTPRSTLQPPYPSPLAAKLLNVDGAV 131 Query: 53 SVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIH-----NGGLGDMKLDDMG 106 SV+FG DFITV KD +W H++P + +I E G+ +++ G G + Sbjct: 132 SVFFGSDFITVTKDSDANWAHIKPEIFSLITEAITRGEALVNVVDVRQGKEGAEGAEAEE 191 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + + E D VV I+E+L+ R+RPA+ DGGDI F+G+ +G V L +RGAC C S++ Sbjct: 192 AVRYNEEDEEVVGMIQELLETRIRPAIQEDGGDIEFRGFENGNVLLKLRGACRTCDSSTV 251 Query: 167 TLKYGVANILNHFV 180 TLK G+ ++L H+V Sbjct: 252 TLKNGIESMLMHYV 265 >gi|218516514|ref|ZP_03513354.1| nitrogen fixation protein [Rhizobium etli 8C-3] Length = 99 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 57/92 (61%), Positives = 73/92 (79%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPAT KF+PG+VV+ G F +A EAE SPLA+R+F IPG+ VYFGYDF Sbjct: 1 MFIQTEATPNPATQKFLPGKVVMENGTAEFRSAAEAEASPLAARLFEIPGVTGVYFGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPII 92 I+V KD +W+HL+P +LG IM+HF+SG P++ Sbjct: 61 ISVSKDNAEWQHLKPAILGSIMKHFMSGKPVM 92 >gi|146418001|ref|XP_001484967.1| hypothetical protein PGUG_02696 [Meyerozyma guilliermondii ATCC 6260] Length = 244 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 71/193 (36%), Positives = 119/193 (61%), Gaps = 11/193 (5%) Query: 4 QTEDTPNPATLKFI-PGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 QT TPN LKF+ P ++V +E F+++ +A SPLA ++F +PG+ SV G DF+ Sbjct: 23 QTLSTPNENALKFVSPTKIVPMENKTFEFTSSLQAVHSPLALKLFKLPGVRSVMLGPDFL 82 Query: 62 TVGK-DQYDWEHLRPPVLGMIMEHFIS--GDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 TV K D +W HLRP VL + ++ F++ +P+I + + + + D +V Sbjct: 83 TVNKQDHVNWAHLRPEVLSL-LDKFLTEKQEPVITKELIEATEKEAAEADA---DDLEIV 138 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+++ R+RPA+ DGGDI +K + + G VFL ++GAC C ++ +TLK+G+ ++L Sbjct: 139 SMIKELIETRIRPAIQDDGGDIEYKAFDEETGTVFLKLQGACKSCSASEDTLKHGIESML 198 Query: 177 NHFVPEVKDIRTV 189 H+V EV+++ + Sbjct: 199 KHYVEEVQEVEQI 211 >gi|149248632|ref|XP_001528703.1| hypothetical protein LELG_01223 [Lodderomyces elongisporus NRRL YB-4239] gi|146448657|gb|EDK43045.1| hypothetical protein LELG_01223 [Lodderomyces elongisporus NRRL YB-4239] Length = 248 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 74/202 (36%), Positives = 118/202 (58%), Gaps = 17/202 (8%) Query: 1 MFIQTEDTPNPATLKFI-PGQVVL--VEGAIHFSNAKEAEISPLASRIFSIPGIASVYFG 57 + +T TPN LKFI P +L F++ +A SPLA ++F IPG+ S+ G Sbjct: 17 LHFKTASTPNENALKFISPESPILPVANTTFEFNSTLQAIHSPLALQLFKIPGVKSIMLG 76 Query: 58 YDFITVGK-DQYDWEHLRPPVLGMIMEHFI------SGD-PIIHNGGLGDMKLDDMGSGD 109 +DF+TV K D +DW L P V+ +M F+ SG P++ L + + + Sbjct: 77 HDFLTVNKLDNHDWNSLSPEVMD-VMNKFLDKAGENSGKVPVVTQELLNKAESERLAED- 134 Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASET 167 E DS +V IKE+++ R+RPA+ DGGDI +KG+ + G VFL ++GAC C ++ +T Sbjct: 135 --EDDSELVLMIKELIETRIRPAIQDDGGDIEYKGFDEETGTVFLKLQGACKSCSASEDT 192 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 LK G+ ++L H++ EVK+++ + Sbjct: 193 LKGGIESMLMHYIEEVKEVQQI 214 >gi|68472639|ref|XP_719638.1| hypothetical protein CaO19.9614 [Candida albicans SC5314] gi|68472898|ref|XP_719514.1| hypothetical protein CaO19.2067 [Candida albicans SC5314] gi|46441335|gb|EAL00633.1| hypothetical protein CaO19.2067 [Candida albicans SC5314] gi|46441464|gb|EAL00761.1| hypothetical protein CaO19.9614 [Candida albicans SC5314] Length = 237 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 69/190 (36%), Positives = 113/190 (59%), Gaps = 14/190 (7%) Query: 4 QTEDTPNPATLKFIPGQVVLV---EGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +T TPNP LKFI + ++ + F+ +A SPLA +F IPG+ SV G+DF Sbjct: 19 KTLPTPNPNALKFISPECNILPMNDKTFEFTTTLQAIHSPLALTLFKIPGVKSVMLGHDF 78 Query: 61 ITVGKDQY-DWEHLRPPVLGMIMEHFISGD-PIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +TV K Y +W +LRP ++ + E S P+I + + + + E +S ++ Sbjct: 79 LTVNKQDYINWANLRPEIVEQLDEFLTSKKHPVITKELVDEAQRE-------AEEESELI 131 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+++ R+RPA+ DGGDI KG+ + G VF+ ++GAC C ++ +TLK+G+ ++L Sbjct: 132 SMIKELIETRIRPAIQDDGGDIELKGFDEETGTVFVKLQGACKSCSASEDTLKHGIESML 191 Query: 177 NHFVPEVKDI 186 H+V EVK++ Sbjct: 192 MHYVEEVKEV 201 >gi|126131446|ref|XP_001382248.1| hypothetical protein PICST_76567 [Scheffersomyces stipitis CBS 6054] gi|126094073|gb|ABN64219.1| nitrogen fixing protein [Scheffersomyces stipitis CBS 6054] Length = 242 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 73/191 (38%), Positives = 116/191 (60%), Gaps = 12/191 (6%) Query: 4 QTEDTPNPATLKFIPGQVVLVEGA---IHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 QT TPNP LKFI + ++ A F++ ++ SPLA R+F IPG+ SV G +F Sbjct: 18 QTLPTPNPNALKFISPECNILPMAGKTFEFTSTLQSVHSPLALRLFKIPGVRSVMLGENF 77 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFIS--GDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 +TV K D +W +LRP V+ + M+ F++ +P I L D + + DS + Sbjct: 78 LTVNKQDHINWANLRPEVVEL-MDDFLTTKQEPSI-TKELVDQSQQESEVAE--AEDSEI 133 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE+++ R+RPA+ DGGDI +K + + G VFL ++GAC C S+ +TLK+G+ ++ Sbjct: 134 VSMIKELIETRIRPAIQDDGGDIEYKAFDEETGTVFLKLQGACKSCSSSEDTLKHGIESM 193 Query: 176 LNHFVPEVKDI 186 L H++ EV+++ Sbjct: 194 LMHYIEEVREV 204 >gi|312885490|ref|ZP_07745129.1| Scaffold protein Nfu/NifU [Mucilaginibacter paludis DSM 18603] gi|311302070|gb|EFQ79100.1| Scaffold protein Nfu/NifU [Mucilaginibacter paludis DSM 18603] Length = 182 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 67/185 (36%), Positives = 114/185 (61%), Gaps = 13/185 (7%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + TE TPNPAT+KFI ++ L+ G++ ++ + AE SP A +F + V+F +F+T Sbjct: 5 VYTESTPNPATMKFIVNKL-LINGSVDYATRESAEKSPFAKELFKFSFVNGVFFASNFVT 63 Query: 63 VGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 V K + DW L P I++ F+ G + + L +++ + F +D+ + +I Sbjct: 64 VTKTEGSDWNDLEP-----ILKEFVKG--AVESELL--VQIKEQEEVAFEGTDAEI--KI 112 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP 181 +++L + VRPAV +DGG I +K + +G+V + +RG+CSGCPS++ TLK G+ N+L VP Sbjct: 113 QQILQDYVRPAVEQDGGAITYKSFNEGVVTVELRGSCSGCPSSTITLKSGIENLLKRMVP 172 Query: 182 EVKDI 186 EV ++ Sbjct: 173 EVTEV 177 >gi|255723790|ref|XP_002546824.1| hypothetical protein CTRG_01129 [Candida tropicalis MYA-3404] gi|240134715|gb|EER34269.1| hypothetical protein CTRG_01129 [Candida tropicalis MYA-3404] Length = 237 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 70/189 (37%), Positives = 110/189 (58%), Gaps = 13/189 (6%) Query: 8 TPNPATLKFIPGQVVLV---EGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVG 64 TPNP LKFI + ++ + F+ +A SPLA +F IPG+ SV G+DF+TV Sbjct: 22 TPNPNALKFISEECNILPMEDKTFEFTTTMQAMHSPLALMLFKIPGVNSVMLGHDFLTVN 81 Query: 65 KDQY-DWEHLRPPVLGMIMEHFISG-DPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIK 122 K Y +W +LRP ++ + E S P+I +L D + + DS ++ IK Sbjct: 82 KQDYINWANLRPEIVEHLDEFLTSKKQPVITK------ELIDKANEESEMDDSELMSMIK 135 Query: 123 EVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 E+++ R+RPA+ DGGDI KG+ + G VF+ ++GAC C ++ +TLK G+ +L H++ Sbjct: 136 ELIETRIRPAIQDDGGDIELKGFDEETGTVFVKLQGACKSCSASEDTLKSGIEGMLMHYI 195 Query: 181 PEVKDIRTV 189 EVK++ V Sbjct: 196 EEVKEVVQV 204 >gi|238881874|gb|EEQ45512.1| conserved hypothetical protein [Candida albicans WO-1] Length = 237 Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 69/190 (36%), Positives = 113/190 (59%), Gaps = 14/190 (7%) Query: 4 QTEDTPNPATLKFIPGQVVLV---EGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +T TPNP LKFI + ++ + F+ +A SPLA +F IPG+ SV G+DF Sbjct: 19 KTLPTPNPNALKFISPECNILPMNDKTFEFTTTLQAIHSPLALTLFKIPGVKSVMLGHDF 78 Query: 61 ITVGKDQY-DWEHLRPPVLGMIMEHFISGD-PIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +TV K Y +W +LRP ++ + E S P+I + + + + E +S ++ Sbjct: 79 LTVNKQDYINWANLRPGIVEQLDEFLTSKKHPVITKELVDEAQRE-------AEEESELI 131 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+++ R+RPA+ DGGDI KG+ + G VF+ ++GAC C ++ +TLK+G+ ++L Sbjct: 132 SMIKELIETRIRPAIQDDGGDIELKGFDEETGTVFVKLQGACKSCSASEDTLKHGIESML 191 Query: 177 NHFVPEVKDI 186 H+V EVK++ Sbjct: 192 MHYVEEVKEV 201 >gi|110636788|ref|YP_676995.1| thioredoxin-like protein [Cytophaga hutchinsonii ATCC 33406] gi|110279469|gb|ABG57655.1| thioredoxin-related protein [Cytophaga hutchinsonii ATCC 33406] Length = 191 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 68/185 (36%), Positives = 105/185 (56%), Gaps = 7/185 (3%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + TE TPNP TLKFI + ++ EG++ F A AE PL +F + V+ +FIT Sbjct: 8 VYTEATPNPNTLKFITDKTLVEEGSVDFPMASSAESCPLVLDLFRFDFVKRVFMAANFIT 67 Query: 63 VGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 V K + +WE + + +I + G P+ + + +E + VV +I Sbjct: 68 VTKSEGMEWEEVSGMIKSLIKGYIEEGKPLFKETH------KPLSNTAPVEGEPEVVTKI 121 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP 181 K VLD +RPAV +DGG I F+ + DG+V + ++G+CSGCPS++ TLK G+ N+L VP Sbjct: 122 KVVLDEYIRPAVEQDGGAINFESFVDGVVKVQLQGSCSGCPSSTVTLKSGIENLLKRMVP 181 Query: 182 EVKDI 186 EV ++ Sbjct: 182 EVTEV 186 >gi|190346499|gb|EDK38598.2| hypothetical protein PGUG_02696 [Meyerozyma guilliermondii ATCC 6260] Length = 244 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 71/196 (36%), Positives = 120/196 (61%), Gaps = 11/196 (5%) Query: 1 MFIQTEDTPNPATLKFI-PGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 + QT TPN LKF+ P ++V +E F+++ +A SPLA ++F +PG+ SV G Sbjct: 20 LTFQTLSTPNENALKFVSPTKIVPMENKTFEFTSSLQAVHSPLALKLFKLPGVRSVMLGP 79 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFIS--GDPIIHNGGLGDMKLDDMGSGDFIESDS 115 DF+TV K D +W HLRP V +++ F++ +P+I + + + + DS Sbjct: 80 DFLTVNKQDHVNWAHLRPEV-SSLLDKFLTEKQEPVITKELIEATEKEAAEADA---DDS 135 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVA 173 +V IKE+++ R+RPA+ DGGDI +K + + G VFL ++GAC C ++ +TLK+G+ Sbjct: 136 EIVSMIKELIETRIRPAIQDDGGDIEYKAFDEETGTVFLKLQGACKSCSASEDTLKHGIE 195 Query: 174 NILNHFVPEVKDIRTV 189 ++L H+V EV+++ + Sbjct: 196 SMLKHYVEEVQEVEQI 211 >gi|195559882|ref|XP_002077376.1| GD12677 [Drosophila simulans] gi|194202482|gb|EDX16058.1| GD12677 [Drosophila simulans] Length = 175 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 62/149 (41%), Positives = 90/149 (60%), Gaps = 8/149 (5%) Query: 42 ASRIFSIPGIASVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDM 100 A +F + G+ V+FG DFIT+ K + +W ++P V +IM+ F SG P++++ Sbjct: 1 AKLLFRVEGVKGVFFGSDFITISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPN-- 58 Query: 101 KLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSG 160 + +E D V IKE+LD R+RP V DGGDIVF GY G+V L M+G+CS Sbjct: 59 -----ADTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGYEAGVVKLKMQGSCSS 113 Query: 161 CPSASETLKYGVANILNHFVPEVKDIRTV 189 CPS+ TLK GV N+L ++PEV+ + V Sbjct: 114 CPSSIVTLKNGVQNMLQFYIPEVESVEQV 142 >gi|311745600|ref|ZP_07719385.1| NifU domain protein [Algoriphagus sp. PR1] gi|126578163|gb|EAZ82383.1| NifU domain protein [Algoriphagus sp. PR1] Length = 193 Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 68/185 (36%), Positives = 109/185 (58%), Gaps = 10/185 (5%) Query: 6 EDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVG 64 E PNP +LKF+ +++ EG + F +A AE SPLA +F+ + V+ +F+TV Sbjct: 14 EANPNPNSLKFVANFMLVDEGVSFDFPDAASAENSPLALELFNFSAVDRVFVASNFVTVT 73 Query: 65 KDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKE 123 K + +W ++ I ++ SG ++ D D + F E+DS V++IK Sbjct: 74 KKEDVEWSEVQNIFRDHIKKYLESGQAVVK----ADFDKDPL----FDENDSETVKKIKG 125 Query: 124 VLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEV 183 +LD +RPAV +DGG IVF + DG+V + ++G+CSGCPS++ TLK G+ N+L +PEV Sbjct: 126 ILDEYIRPAVEQDGGAIVFHSFHDGVVKVLLQGSCSGCPSSTVTLKAGIQNLLTRMLPEV 185 Query: 184 KDIRT 188 K++ Sbjct: 186 KEVEA 190 >gi|255532822|ref|YP_003093194.1| nitrogen-fixing NifU domain-containing protein [Pedobacter heparinus DSM 2366] gi|255345806|gb|ACU05132.1| nitrogen-fixing NifU domain protein [Pedobacter heparinus DSM 2366] Length = 183 Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 69/188 (36%), Positives = 112/188 (59%), Gaps = 18/188 (9%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + TE TPNPAT+KF+ ++ L+ G+ F+ + AE SP A +F + V+F +F+T Sbjct: 5 VYTEQTPNPATMKFMVNKL-LINGSEDFATKESAEHSPFAKELFKFSFVNGVFFASNFVT 63 Query: 63 VGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD---FIESDSAVV 118 V K + +W + P I++ F+ G + K+ + S + F SD + Sbjct: 64 VTKTEDAEWADIEP-----ILKEFVKG------AVESEYKIKEDTSAEAPAFEGSDLEI- 111 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +I+++L + VRPAV +DGG I +K + DG+V + +RG+CSGCPS++ TLK G+ N+L Sbjct: 112 -KIQQILHDYVRPAVEQDGGAISYKSFDDGVVTVELRGSCSGCPSSTITLKSGIQNLLQR 170 Query: 179 FVPEVKDI 186 VPEVK++ Sbjct: 171 MVPEVKEV 178 >gi|332664007|ref|YP_004446795.1| nitrogen-fixing NifU domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332332821|gb|AEE49922.1| nitrogen-fixing NifU domain-containing protein [Haliscomenobacter hydrossis DSM 1100] Length = 212 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 68/191 (35%), Positives = 111/191 (58%), Gaps = 7/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 + + TE TPNP +LKF+ ++ L G F A E SPLA+ +F P + VY + Sbjct: 19 VLLYTEQTPNPESLKFVTNRM-LYRGTADFREVDLATEWSPLATALFDFPYVRGVYVSNN 77 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNG---GLGDMKLDDMGSGDFIESDS 115 F+TV K+ Y+W + + I + G ++ G + ++ D G + ++ Sbjct: 78 FVTVSKELNYEWPDIMLKLKDFIKNYIEEGGELVKEGFAEHISKIEADRAGVA-YTGDEA 136 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 +VQ+IKE++D V+PAV DGG+I FK Y +G VF+ M+G+CSGCPS++ TLK G+ + Sbjct: 137 ELVQKIKELIDTYVKPAVEMDGGNIEFKHYENGKVFVLMQGSCSGCPSSTVTLKAGIEGM 196 Query: 176 LNHFVPEVKDI 186 L +P+V+++ Sbjct: 197 LKRMIPQVEEV 207 >gi|323347797|gb|EGA82061.1| Nfu1p [Saccharomyces cerevisiae Lalvin QA23] Length = 256 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 117/204 (57%), Gaps = 19/204 (9%) Query: 1 MFIQTEDTPNPATLKFIP--GQVVLVEGA--IHFSNAKEAEI--SPLASRIF-SIPGIAS 53 + I+T TPN LKF+ G+++ G+ I N E I S LA +IF PG+ S Sbjct: 22 IHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVES 81 Query: 54 VYFGYDFITVGKDQY-DWEHLRPPVLGMIMEHFISGDPII--------HNGGLGDMKLDD 104 + G DF+T+ KD+ W ++P ++ ++ + G+ +I G G K++ Sbjct: 82 LMIGDDFLTINKDRMVHWNSIKPEIIDLLTKQLAXGEDVISKEFHAVQEEEGEGGYKIN- 140 Query: 105 MGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCP 162 M + E D V + I+E++D R+RPA+ DGGDI ++G+ + G V+L ++GAC+ C Sbjct: 141 MPKFELTEEDEEVSELIEELIDTRIRPAILEDGGDIDYRGWDPKTGTVYLRLQGACTSCS 200 Query: 163 SASETLKYGVANILNHFVPEVKDI 186 S+ TLKYG+ ++L H+V EVK++ Sbjct: 201 SSEVTLKYGIESMLKHYVDEVKEV 224 >gi|327188587|gb|EGE55797.1| nitrogen fixation protein [Rhizobium etli CNPAF512] Length = 107 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 59/109 (54%), Positives = 84/109 (77%), Gaps = 9/109 (8%) Query: 82 MEHFISGDPIIHNGGLGDMKL--DDMGSGD--FIESDSAVVQRIKEVLDNRVRPAVARDG 137 MEHF+SG P+ +GD + +D +GD F E D ++V IKE+L+ RVRPAVA+DG Sbjct: 1 MEHFMSGKPV-----MGDASILSEDADAGDEFFDEGDESIVLTIKELLETRVRPAVAQDG 55 Query: 138 GDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 GDI F+G++DG V+L+M+G+CSGCPS++ TLK+GV N+L HFVPEV+++ Sbjct: 56 GDITFRGFKDGKVYLNMKGSCSGCPSSTATLKHGVQNLLRHFVPEVQEV 104 >gi|6322811|ref|NP_012884.1| Nfu1p [Saccharomyces cerevisiae S288c] gi|549668|sp|P32860|NFU1_YEAST RecName: Full=NifU-like protein, mitochondrial; Flags: Precursor gi|486050|emb|CAA81875.1| unnamed protein product [Saccharomyces cerevisiae] gi|45269699|gb|AAS56230.1| YKL040C [Saccharomyces cerevisiae] gi|190409786|gb|EDV13051.1| hypothetical protein SCRG_03979 [Saccharomyces cerevisiae RM11-1a] gi|207343478|gb|EDZ70927.1| YKL040Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256272476|gb|EEU07457.1| Nfu1p [Saccharomyces cerevisiae JAY291] gi|259147796|emb|CAY81046.1| Nfu1p [Saccharomyces cerevisiae EC1118] gi|285813219|tpg|DAA09116.1| TPA: Nfu1p [Saccharomyces cerevisiae S288c] Length = 256 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 117/204 (57%), Gaps = 19/204 (9%) Query: 1 MFIQTEDTPNPATLKFIP--GQVVLVEGA--IHFSNAKEAEI--SPLASRIF-SIPGIAS 53 + I+T TPN LKF+ G+++ G+ I N E I S LA +IF PG+ S Sbjct: 22 IHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVES 81 Query: 54 VYFGYDFITVGKDQY-DWEHLRPPVLGMIMEHFISGDPII--------HNGGLGDMKLDD 104 + G DF+T+ KD+ W ++P ++ ++ + G+ +I G G K++ Sbjct: 82 LMIGDDFLTINKDRMVHWNSIKPEIIDLLTKQLAYGEDVISKEFHAVQEEEGEGGYKIN- 140 Query: 105 MGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCP 162 M + E D V + I+E++D R+RPA+ DGGDI ++G+ + G V+L ++GAC+ C Sbjct: 141 MPKFELTEEDEEVSELIEELIDTRIRPAILEDGGDIDYRGWDPKTGTVYLRLQGACTSCS 200 Query: 163 SASETLKYGVANILNHFVPEVKDI 186 S+ TLKYG+ ++L H+V EVK++ Sbjct: 201 SSEVTLKYGIESMLKHYVDEVKEV 224 >gi|323354104|gb|EGA85950.1| Nfu1p [Saccharomyces cerevisiae VL3] Length = 249 Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 117/204 (57%), Gaps = 19/204 (9%) Query: 1 MFIQTEDTPNPATLKFIP--GQVVLVEGA--IHFSNAKEAEI--SPLASRIF-SIPGIAS 53 + I+T TPN LKF+ G+++ G+ I N E I S LA +IF PG+ S Sbjct: 22 IHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVES 81 Query: 54 VYFGYDFITVGKDQY-DWEHLRPPVLGMIMEHFISGDPII--------HNGGLGDMKLDD 104 + G DF+T+ KD+ W ++P ++ ++ + G+ +I G G K++ Sbjct: 82 LMIGDDFLTINKDRMVHWNSIKPEIIDLLTKQLAYGEDVISKEFHAVQEEEGEGGYKIN- 140 Query: 105 MGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCP 162 M + E D V + I+E++D R+RPA+ DGGDI ++G+ + G V+L ++GAC+ C Sbjct: 141 MPKFELTEEDEEVSELIEELIDTRIRPAILEDGGDIDYRGWDPKTGTVYLRLQGACTSCS 200 Query: 163 SASETLKYGVANILNHFVPEVKDI 186 S+ TLKYG+ ++L H+V EVK++ Sbjct: 201 SSEVTLKYGIESMLKHYVDEVKEV 224 >gi|151941505|gb|EDN59868.1| nifu-like protein [Saccharomyces cerevisiae YJM789] Length = 256 Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 117/204 (57%), Gaps = 19/204 (9%) Query: 1 MFIQTEDTPNPATLKFIP--GQVVLVEGA--IHFSNAKEAEI--SPLASRIF-SIPGIAS 53 + I+T TPN LKF+ G+++ G+ I N E I S LA +IF PG+ S Sbjct: 22 IHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVES 81 Query: 54 VYFGYDFITVGKDQY-DWEHLRPPVLGMIMEHFISGDPII--------HNGGLGDMKLDD 104 + G DF+T+ KD+ W ++P ++ ++ + G+ +I G G K++ Sbjct: 82 LMIGDDFLTINKDRMVHWNSIKPEIIDLLTKQLACGEDVISKEFHAVQEEEGEGGYKIN- 140 Query: 105 MGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCP 162 M + E D V + I+E++D R+RPA+ DGGDI ++G+ + G V+L ++GAC+ C Sbjct: 141 MPKFELSEEDEEVSELIEELIDTRIRPAILEDGGDIDYRGWDPKTGTVYLRLQGACTSCS 200 Query: 163 SASETLKYGVANILNHFVPEVKDI 186 S+ TLKYG+ ++L H+V EVK++ Sbjct: 201 SSEVTLKYGIESMLKHYVDEVKEV 224 >gi|4790|emb|CAA49299.1| YKL253 [Saccharomyces cerevisiae] Length = 230 Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 117/204 (57%), Gaps = 19/204 (9%) Query: 1 MFIQTEDTPNPATLKFIP--GQVVLVEGA--IHFSNAKEAEI--SPLASRIF-SIPGIAS 53 + I+T TPN LKF+ G+++ G+ I N E I S LA +IF PG+ S Sbjct: 22 IHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVES 81 Query: 54 VYFGYDFITVGKDQY-DWEHLRPPVLGMIMEHFISGDPII--------HNGGLGDMKLDD 104 + G DF+T+ KD+ W ++P ++ ++ + G+ +I G G K++ Sbjct: 82 LMIGDDFLTINKDRMVHWNSIKPEIIDLLTKQLAYGEDVISKEFHAVQEEEGEGGYKIN- 140 Query: 105 MGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCP 162 M + E D V + I+E++D R+RPA+ DGGDI ++G+ + G V+L ++GAC+ C Sbjct: 141 MPKFELTEEDEEVSELIEELIDTRIRPAILEDGGDIDYRGWDPKTGTVYLRLQGACTSCS 200 Query: 163 SASETLKYGVANILNHFVPEVKDI 186 S+ TLKYG+ ++L H+V EVK++ Sbjct: 201 SSEVTLKYGIESMLKHYVDEVKEV 224 >gi|254566217|ref|XP_002490219.1| Protein involved in iron metabolism in mitochondria [Pichia pastoris GS115] gi|238030015|emb|CAY67938.1| Protein involved in iron metabolism in mitochondria [Pichia pastoris GS115] gi|328350616|emb|CCA37016.1| NifU-like protein 5, mitochondrial [Pichia pastoris CBS 7435] Length = 257 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/213 (33%), Positives = 114/213 (53%), Gaps = 24/213 (11%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSN------AKEAEISPLASRIFSIPGIASV 54 + IQT TPN LKFI V L+ I S A E SPLA ++F +PG+ S+ Sbjct: 20 LSIQTASTPNDNALKFITKGVRLLPPHIQKSTIEIDDLASATEKSPLALQLFKVPGVKSI 79 Query: 55 YFGYDFITVGK--------DQYDWEHLRPPVLGMIMEHFISGDPIIHN-------GGLGD 99 G DFITV K D W+ L+P ++ +I N + + Sbjct: 80 LIGDDFITVNKVDEKLSNSDHSRWQFLKPQIINVIDRSLSKSSEKKVNVLTPQFLENISN 139 Query: 100 MKLDD-MGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRG 156 + DD + S + +++D V IKE+++ R+RPA+ DGGD+ F+ + GIV++ ++G Sbjct: 140 VHHDDYIVSQEPLDTDDDVTYEIKELINTRIRPAIQDDGGDVQFRRFDPDAGIVYIKLKG 199 Query: 157 ACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 AC C + +TLK+G+ ++L H+V EVK+++ + Sbjct: 200 ACKSCSLSEDTLKHGIESMLQHYVEEVKEVKAI 232 >gi|326801010|ref|YP_004318829.1| Scaffold protein Nfu/NifU [Sphingobacterium sp. 21] gi|326551774|gb|ADZ80159.1| Scaffold protein Nfu/NifU [Sphingobacterium sp. 21] Length = 184 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 65/189 (34%), Positives = 118/189 (62%), Gaps = 20/189 (10%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + TE TPNPAT+KF+ ++ L G++ F + ++A+ SP A +F + V+F +F+T Sbjct: 6 VYTESTPNPATMKFLVNKL-LYNGSLDFPDKEKAQSSPFARELFKFNFVNGVFFASNFVT 64 Query: 63 VGKDQ-YDWEHLRPPVLGMIMEHFISG----DPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 + K + +WE + P I++ F+ G + +IH +++ D+ + + E++ Sbjct: 65 ITKSEDSEWEDILP-----ILKDFVKGAVESELLIH-----EVERDENVAFEGSETE--- 111 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++I++VL + VRPAV +DGG I +K + +G+V + +RG+CSGCPS++ TLK G+ +L Sbjct: 112 -KKIQQVLHDYVRPAVEQDGGAIAYKSFDEGVVTVELRGSCSGCPSSTITLKAGIEGLLK 170 Query: 178 HFVPEVKDI 186 VPEV+++ Sbjct: 171 RMVPEVQEV 179 >gi|310877201|gb|ADP36961.1| hypothetical protein [Asterochloris sp. DA2] Length = 141 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 62/123 (50%), Positives = 83/123 (67%), Gaps = 11/123 (8%) Query: 68 YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD--FIESDSAVVQRIKEVL 125 Y W L+P V IM+HF SGDP++ + D+ G+ D E DS VV IKE+L Sbjct: 1 YTWSVLKPDVFXAIMDHFTSGDPLL-------LDDDEYGASDTAIQEDDSDVVAMIKELL 53 Query: 126 DNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEV 183 + R+RPAV DGGDIVF+G+ + GIV L M+GACSGCPS++ TLK G+ N+L H++PEV Sbjct: 54 ETRIRPAVMEDGGDIVFQGFDENSGIVKLKMQGACSGCPSSAVTLKSGIENMLKHYIPEV 113 Query: 184 KDI 186 K + Sbjct: 114 KSM 116 >gi|260838224|ref|XP_002613749.1| hypothetical protein BRAFLDRAFT_84497 [Branchiostoma floridae] gi|229299138|gb|EEN69758.1| hypothetical protein BRAFLDRAFT_84497 [Branchiostoma floridae] Length = 263 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/193 (40%), Positives = 105/193 (54%), Gaps = 28/193 (14%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT++TPNP +LKF+PG VL G F N A SPLA + + Sbjct: 64 MFIQTQETPNPNSLKFLPGCEVLETGTFDFPNHSAAHASPLARLVHPL------------ 111 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI--ESDSAVV 118 D YDW+ L+P + IM+ F SG PI+ D+ D + D V Sbjct: 112 ---DDDTYDWQILKPDIFATIMDFFASGLPIL---------TDEPPPSDTVIHPDDDETV 159 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANIL 176 Q IKE+LD R+RP V DGGDIV+ G+ GIV L M+G+CS CPS+ TL+ GV N+L Sbjct: 160 QMIKELLDTRIRPTVQEDGGDIVYVGFDQESGIVKLKMQGSCSSCPSSVVTLRSGVQNML 219 Query: 177 NHFVPEVKDIRTV 189 ++PEV+ + V Sbjct: 220 QFYIPEVQGVEEV 232 >gi|156839096|ref|XP_001643243.1| hypothetical protein Kpol_460p20 [Vanderwaltozyma polyspora DSM 70294] gi|156113844|gb|EDO15385.1| hypothetical protein Kpol_460p20 [Vanderwaltozyma polyspora DSM 70294] Length = 256 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 112/202 (55%), Gaps = 16/202 (7%) Query: 1 MFIQTEDTPNPATLKFIP--GQVVLVEG--AIHFSNAKEA--EISPLASRIF-SIPGIAS 53 + ++T TPN LKFI G++ G ++ N ++ E S A R+F PGI S Sbjct: 27 LHVKTVSTPNENALKFISTDGELFQDRGTHSLEIKNTDDSLIEQSKFAQRLFVQCPGIES 86 Query: 54 VYFGYDFITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG---- 108 + G DF+TV KD+ W ++P VL ++++ SG+ I+ K + G Sbjct: 87 LMIGDDFVTVNKDEMIHWNQIKPNVLEILLQQLSSGESIVTQKFHEISKESESGYDIQLP 146 Query: 109 --DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSA 164 + E + V I E++ R+RPA+ DGGDI ++GY + G V+L ++GAC C S+ Sbjct: 147 KFELNEDEQEVSDMIDELIQTRIRPAIQDDGGDIQYRGYDPKTGKVYLKLQGACKSCSSS 206 Query: 165 SETLKYGVANILNHFVPEVKDI 186 +TLKYG+ ++L H+V EV+++ Sbjct: 207 EDTLKYGIESMLKHYVEEVEEV 228 >gi|328350796|emb|CCA37196.1| NifU-like protein 5, mitochondrial [Pichia pastoris CBS 7435] Length = 210 Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 66/181 (36%), Positives = 100/181 (55%), Gaps = 15/181 (8%) Query: 14 LKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITV-GKDQYDWEH 72 +K +P Q I F N ++A SPLA ++F I G+ ++ G+DFITV K Q DW Sbjct: 1 MKILPEQTT-----IEFLNGRQAFKSPLALKLFGIDGVKTIMIGHDFITVEKKTQDDWSL 55 Query: 73 LRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA--VVQRIKEVLDNRVR 130 L+P + ++ E +G P+ L + D +E D VV +KE++ R+R Sbjct: 56 LKPEIFAVLTESLNNGTPV-----LNEQHQSDANDQALLEEDDEDEVVSMVKELIFTRIR 110 Query: 131 PAVARDGGDIVFK--GYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 PA+ DGGDI F Y G V+L +RGAC C S+S TLK G+ ++L H++ EV+ + Sbjct: 111 PAIQDDGGDIEFVRFEYETGTVYLRLRGACRSCSSSSITLKNGIESMLKHYIEEVEAVEQ 170 Query: 189 V 189 + Sbjct: 171 I 171 >gi|325104464|ref|YP_004274118.1| Scaffold protein Nfu/NifU [Pedobacter saltans DSM 12145] gi|324973312|gb|ADY52296.1| Scaffold protein Nfu/NifU [Pedobacter saltans DSM 12145] Length = 183 Score = 120 bits (301), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 110/186 (59%), Gaps = 14/186 (7%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + TE TPNP T+KFI ++ L+ G++ + + A S AS ++ + V+F +F+T Sbjct: 5 VYTESTPNPNTMKFIVNKL-LINGSVDYPTRESATESRFASELYKFSFVNGVFFASNFVT 63 Query: 63 VGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ-R 120 + K + +W + P I++ F+ G + + +F++ + + V+ + Sbjct: 64 ITKSEDAEWADIEP-----ILKEFVKG------AVESEYAVQSKKEEEFVDFEGSEVEIK 112 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I+++L + V+PAV +DGG I +K + DG+V + +RG+CSGCPS++ TLK G+ ++L V Sbjct: 113 IQQILHDYVKPAVEQDGGAIAYKSFEDGVVTVELRGSCSGCPSSTITLKSGIQSLLQRMV 172 Query: 181 PEVKDI 186 PEVK++ Sbjct: 173 PEVKEV 178 >gi|320581036|gb|EFW95258.1| hypothetical protein HPODL_3630 [Pichia angusta DL-1] Length = 242 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/201 (34%), Positives = 109/201 (54%), Gaps = 12/201 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG----AIHFSNAKEA-EISPLASRIFSI--PGIAS 53 +FIQT+ TPN LKF+P + + + + K+A S LA ++ S+ I S Sbjct: 20 LFIQTQSTPNENALKFVPSEFKFLPSPNTPTLEITGIKDALNKSELAFKLLSVNDKSIKS 79 Query: 54 VYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDF-- 110 + FGY+FITV K +++ W L+P + ++ EH SG +I+ + + + D Sbjct: 80 ILFGYNFITVIKGEKHSWSLLKPEIFSILTEHLTSGQAVINQKYINILGQQSAENEDLDG 139 Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETL 168 E + VV I E+L R++PA+ DGGDI F + + G VFL + GAC C S+ TL Sbjct: 140 YEDEDEVVALINELLITRIQPAIQEDGGDIKFVRFDEDTGTVFLKLIGACKSCSSSEITL 199 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ +L ++ EVK ++ V Sbjct: 200 KNGIEEMLKFYIDEVKSVQQV 220 >gi|149280243|ref|ZP_01886366.1| thioredoxin-related protein [Pedobacter sp. BAL39] gi|149229080|gb|EDM34476.1| thioredoxin-related protein [Pedobacter sp. BAL39] Length = 183 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 110/188 (58%), Gaps = 18/188 (9%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + TE TPNPAT+KF+ ++ L+ G+ F+ + AE S A +F + V+F +F+T Sbjct: 5 VYTEQTPNPATMKFMVNKL-LINGSEDFATRESAEHSQFAKELFKFNFVNGVFFASNFVT 63 Query: 63 VGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD---FIESDSAVV 118 + K + DW+ + +++ F+ G + K+ + + F SD + Sbjct: 64 ITKTEDADWQDIEA-----LLKDFVKG------AVESEYKIKEETQAEAPAFEGSDLEI- 111 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +I+++L + VRPAV +DGG I +K + +G+V + +RG+CSGCPS++ TLK G+ N+L Sbjct: 112 -KIQQILHDYVRPAVEQDGGAISYKSFDEGVVTVELRGSCSGCPSSTITLKSGIQNLLQR 170 Query: 179 FVPEVKDI 186 VPEVK++ Sbjct: 171 MVPEVKEV 178 >gi|79313311|ref|NP_001030735.1| NFU4; structural molecule [Arabidopsis thaliana] gi|332642928|gb|AEE76449.1| NifU-like protein 4 [Arabidopsis thaliana] Length = 222 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 62/146 (42%), Positives = 87/146 (59%), Gaps = 6/146 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP++L F PG+ V+ G+ F N + A SPLA I+SI G+ V+FG DF Sbjct: 80 MFIQTQSTPNPSSLMFYPGKPVMEVGSADFPNVRSALGSPLAKSIYSIDGVVRVFFGSDF 139 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D W+ L+P + +M+ + SG P+ + K + E DS V Sbjct: 140 VTVTKSDDVSWDILKPEIFAAVMDFYSSGQPLFLDSQAAAAKDTAIS-----EDDSETVA 194 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY 145 IKE+L+ R+RPAV DGGDI + G+ Sbjct: 195 MIKELLETRIRPAVQDDGGDIEYCGF 220 >gi|294659524|ref|XP_461916.2| DEHA2G08492p [Debaryomyces hansenii CBS767] gi|199434030|emb|CAG90379.2| DEHA2G08492p [Debaryomyces hansenii] Length = 240 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 66/191 (34%), Positives = 114/191 (59%), Gaps = 13/191 (6%) Query: 4 QTEDTPNPATLKFIPGQVVLV---EGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +T +TPNP LKFI + ++ F++ +A SPLA ++F + G+ S+ G DF Sbjct: 21 KTLETPNPNALKFISPECQILPIPSKTFEFTSTLQAIHSPLALKLFKLHGVRSIMLGEDF 80 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISG--DPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 +TV K D +W LRP V+ + ++ F++ + ++ + + + + S D DS + Sbjct: 81 LTVNKQDHINWAQLRPEVVDL-LDGFLTSKKESVVTKELIEESEREIESSED----DSEI 135 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE+++ R+RPA+ DGGDI FKG+ + G VFL ++GAC C S+ +TLK G+ + Sbjct: 136 VSMIKELIETRIRPAIQDDGGDIEFKGFDEETGNVFLKLQGACKTCSSSEDTLKNGIEQM 195 Query: 176 LNHFVPEVKDI 186 + H++ V+++ Sbjct: 196 MKHYIDGVQEV 206 >gi|255713524|ref|XP_002553044.1| KLTH0D07458p [Lachancea thermotolerans] gi|238934424|emb|CAR22606.1| KLTH0D07458p [Lachancea thermotolerans] Length = 248 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 117/204 (57%), Gaps = 21/204 (10%) Query: 1 MFIQTEDTPNPATLKFIP--GQVVLVEG--AIHFSNAKEAEI--SPLASRIFS-IPGIAS 53 + I++ TPN LKFI G+++ G ++ N E+ I SPLASR+F+ PG+ + Sbjct: 21 LHIKSVSTPNENALKFISTDGELLQERGKPSVEIKNTDESLIKHSPLASRLFTQCPGVEA 80 Query: 54 VYFGYDFITVGKDQY-DWEHLRPPVLGMIMEHFISGDPII-------HNGGLG-DMKLDD 104 + G DFITV KD+ W + P V+ ++ ++ SG + G+G D+ + Sbjct: 81 LMIGDDFITVNKDEMVHWNQITPSVIDLLTQYLASGREAVTPEFFSVQEQGVGYDVNVPK 140 Query: 105 MGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCP 162 ++ E + + I E++ R+RPA+ DGGDI ++GY + G V+L ++GAC C Sbjct: 141 F---EYNEDEQEISDMIDELIQTRIRPAIMDDGGDIQYRGYDPQTGTVYLKLQGACKSCS 197 Query: 163 SASETLKYGVANILNHFVPEVKDI 186 S+ TLK+G+ ++L H++ EV+++ Sbjct: 198 SSEVTLKHGIESMLKHYIEEVENV 221 >gi|316971797|gb|EFV55531.1| putative HECT-domain protein [Trichinella spiralis] Length = 626 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 63/144 (43%), Positives = 82/144 (56%), Gaps = 11/144 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M+IQ +TPNP +LKF+PG VL F N AE SPLA IF I G+ SV+FG DF Sbjct: 1 MYIQVMETPNPHSLKFLPGIPVLPGRTAEFPNRPSAENSPLARAIFRIKGVKSVFFGEDF 60 Query: 61 ITVGKDQ--YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ DW ++P + IM+ F S II +DD D + D+ V Sbjct: 61 ITVTKNSEVKDWVTMKPEIFSTIMDFFTSKQDII---------IDDSTEKDAADDDNDTV 111 Query: 119 QRIKEVLDNRVRPAVARDGGDIVF 142 IK++L+ R+RP V DGGD+VF Sbjct: 112 AMIKDLLNTRIRPTVQDDGGDVVF 135 >gi|323332794|gb|EGA74199.1| Nfu1p [Saccharomyces cerevisiae AWRI796] Length = 224 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 66/191 (34%), Positives = 110/191 (57%), Gaps = 19/191 (9%) Query: 14 LKFIP--GQVVLVEGA--IHFSNAKEAEI--SPLASRIF-SIPGIASVYFGYDFITVGKD 66 LKF+ G+++ G+ I N E I S LA +IF PG+ S+ G DF+T+ KD Sbjct: 3 LKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVESLMIGDDFLTINKD 62 Query: 67 QY-DWEHLRPPVLGMIMEHFISGDPII--------HNGGLGDMKLDDMGSGDFIESDSAV 117 + W ++P ++ ++ + G+ +I G G K++ M + E D V Sbjct: 63 RMVHWNSIKPEIIDLLTKQLACGEDVISKEFHAVQEEEGEGGYKIN-MPKFELTEEDEEV 121 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + I+E++D R+RPA+ DGGDI ++G+ + G V+L ++GAC+ C S+ TLKYG+ ++ Sbjct: 122 SELIEELIDTRIRPAILEDGGDIDYRGWDPKTGTVYLRLQGACTSCSSSEVTLKYGIESM 181 Query: 176 LNHFVPEVKDI 186 L H+V EVK++ Sbjct: 182 LKHYVDEVKEV 192 >gi|254582903|ref|XP_002499183.1| ZYRO0E05830p [Zygosaccharomyces rouxii] gi|238942757|emb|CAR30928.1| ZYRO0E05830p [Zygosaccharomyces rouxii] Length = 254 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 69/200 (34%), Positives = 110/200 (55%), Gaps = 17/200 (8%) Query: 3 IQTEDTPNPATLKFIP--GQVVLVEGA--IHFSNAKEA--EISPLASRIF-SIPGIASVY 55 I+T TPN LKFI G+++ +G+ + N+ E+ E S LA RIF PG+ S+ Sbjct: 27 IKTMTTPNENALKFISTDGEMLQDKGSSSLEIKNSDESLIEHSNLAQRIFLQCPGVESLM 86 Query: 56 FGYDFITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMG------SG 108 G DF+TV KD W ++P V+ ++ SG+ ++ + ++ D G Sbjct: 87 IGDDFLTVNKDSMVHWNQIKPGVIELLTSQLASGEDVVSDE-FHTIRDSDAGYEVTAPKF 145 Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASE 166 + E D V I E++ R+RPA+ DGGDI ++ Y + G V+L ++GAC C S+ + Sbjct: 146 ELSEEDEEVSDMIDELIQTRIRPAIQDDGGDIQYRAYDPKTGTVYLKLQGACKSCSSSED 205 Query: 167 TLKYGVANILNHFVPEVKDI 186 TLK G+ +L H+V EV ++ Sbjct: 206 TLKAGIEGMLKHYVDEVTNV 225 >gi|327402876|ref|YP_004343714.1| nitrogen-fixing NifU domain-containing protein [Fluviicola taffensis DSM 16823] gi|327318384|gb|AEA42876.1| nitrogen-fixing NifU domain-containing protein [Fluviicola taffensis DSM 16823] Length = 201 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 68/192 (35%), Positives = 108/192 (56%), Gaps = 11/192 (5%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYDF 60 + E TPNP T+KF+ + +L+ G ++ F + EA+ SPLA +F+ P + +V+ +F Sbjct: 8 VYVEMTPNPNTMKFVANKYLLINGESVEFHSGSEAKGYSPLAEELFNFPFVKTVFITANF 67 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE-----SD 114 +TV K D W+ + + I + G I+ + K SGD + + Sbjct: 68 VTVAKNDSISWDFVTMELREFIKSWIVDGKDILIQMPVAKPK---AASGDDSKPAKEYAP 124 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 S I+ +LD VRPAV DGG I F G+ +G V +++RGACSGCPS++ TLK G+ N Sbjct: 125 SEYDDAIRSLLDEYVRPAVEGDGGAIDFVGFEEGTVTVALRGACSGCPSSTATLKGGIEN 184 Query: 175 ILNHFVPEVKDI 186 +L +P+VK++ Sbjct: 185 LLKQHLPDVKEV 196 >gi|71654974|ref|XP_816097.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70881201|gb|EAN94246.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 280 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 109/195 (55%), Gaps = 14/195 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG--AIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 + ++T +TPNP L+F ++ ++ ++ F NA A SPLA +FSI G+ +VY Sbjct: 62 LLVETSETPNPDCLRFYSMELSFLKPGFSMDFPNAGHAYKSPLAEILFSIDGVEAVYIAD 121 Query: 59 DFITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG-----DFIE 112 ++ITV K DW+ + P + I E S I+ G +++ SG + + Sbjct: 122 EYITVRKGHLVDWDSILPMIKESIAEFAESKVNILSEEG------EELLSGHNEDTEPKD 175 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 D V+ +KE+L R+RP + DGG++ + DG VF+ + GAC CPSAS TLK G+ Sbjct: 176 DDDEVILAVKELLATRIRPMLQADGGNVRYLDMDDGTVFVLLEGACKSCPSASVTLKNGI 235 Query: 173 ANILNHFVPEVKDIR 187 +L H++PEV +++ Sbjct: 236 ERMLMHWIPEVVEVQ 250 >gi|322824715|gb|EFZ30028.1| hypothetical protein TCSYLVIO_3695 [Trypanosoma cruzi] Length = 280 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 109/195 (55%), Gaps = 14/195 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG--AIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 + ++T +TPNP L+F ++ ++ ++ F NA A SPLA +FSI G+ +VY Sbjct: 62 LLVETSETPNPDCLRFYSMELSFLKPGFSMDFPNAGHAYKSPLAEILFSIDGVEAVYIAD 121 Query: 59 DFITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG-----DFIE 112 ++ITV K DW+ + P + I E S I+ G +++ SG + + Sbjct: 122 EYITVRKGHLVDWDAILPMIKESIAEFAESKVNILSEEG------EELLSGHNEDTEPKD 175 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 D V+ +KE+L R+RP + DGG++ + DG VF+ + GAC CPSAS TLK G+ Sbjct: 176 DDDEVILAVKELLATRIRPMLQADGGNVRYLDMDDGTVFVLLEGACKSCPSASVTLKNGI 235 Query: 173 ANILNHFVPEVKDIR 187 +L H++PEV +++ Sbjct: 236 ERMLMHWIPEVVEVQ 250 >gi|45185274|ref|NP_982991.1| ABR045Wp [Ashbya gossypii ATCC 10895] gi|44980932|gb|AAS50815.1| ABR045Wp [Ashbya gossypii ATCC 10895] Length = 239 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 109/199 (54%), Gaps = 14/199 (7%) Query: 1 MFIQTEDTPNPATLKFIP--GQVVLVEGA----IHFSNAKEAEISPLASRIFS-IPGIAS 53 + I+T TPN LK++ G+++ GA I + + +PLA ++F+ +PG+ + Sbjct: 20 LHIKTLTTPNENALKYVSTDGELLQERGAPSVEIRNFDMELIRQAPLAEKLFAQVPGVEA 79 Query: 54 VYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE 112 V G DF+TV KD + W + P VL ++ + SG + G + + + E Sbjct: 80 VMIGDDFVTVSKDAELGWAQVTPRVLEVLTQQLASGQAAVQ----GQVAVGGTERFQYDE 135 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKY 170 + + I+E++ RVRPA+ DGGDI ++G+ G V+L ++GAC C S+ TLK+ Sbjct: 136 EEQEISDTIEEIIQTRVRPAIMDDGGDIQYRGWDPETGRVYLKLQGACKSCSSSEVTLKH 195 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ ++L H+V EV + V Sbjct: 196 GIESMLKHYVEEVSGVEQV 214 >gi|50312363|ref|XP_456215.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49645351|emb|CAG98923.1| KLLA0F25476p [Kluyveromyces lactis] Length = 256 Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 110/202 (54%), Gaps = 16/202 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE----GAIHFSNAKEAEI--SPLASRIFS-IPGIAS 53 + I+T TPN LKF+ L++ ++ N E + +P S++F PG+ + Sbjct: 28 IHIKTLTTPNENALKFVSTDGGLLQEKGTQSVEIKNTDEELLKHAPFPSKVFQQCPGVEA 87 Query: 54 VYFGYDFITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG---- 108 + G DF+T+ KD+ W + P V+ ++++H SG P K ++G Sbjct: 88 MMIGDDFVTINKDELIHWNQVTPTVIDLLVQHLASGKPTFLPDFFDVKKSSEVGYDVDIP 147 Query: 109 --DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSA 164 ++ E + + + I E++ R+RPA+ DGGDI ++G+ G V+L ++GAC C S+ Sbjct: 148 KFEYDEDEQEISEMIDELIQTRIRPAIMDDGGDIQYRGWNPETGTVYLKLQGACKSCSSS 207 Query: 165 SETLKYGVANILNHFVPEVKDI 186 +TLK+G+ +L H++ EV+D+ Sbjct: 208 EDTLKHGIEAMLKHYIEEVEDV 229 >gi|262277769|ref|ZP_06055562.1| NifU domain protein [alpha proteobacterium HIMB114] gi|262224872|gb|EEY75331.1| NifU domain protein [alpha proteobacterium HIMB114] Length = 179 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 103/187 (55%), Gaps = 15/187 (8%) Query: 2 FIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 I DTPNP T KF+ Q ++ G+ F + ++ I L + +F I + VY +FI Sbjct: 1 MINVVDTPNPDTKKFVFDQTIVKIGSKEFKKSDQSNID-LVNDLFLIKELELVYLDKNFI 59 Query: 62 TVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ++ K++ W+ + +L + + D + + E + +R Sbjct: 60 SIKKNKDSSWDDIVQDILEALNKRISQN-------------FDALSFEEESEFTDDISKR 106 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I+EVL++++RPAVA DGGDI K ++DG+ + ++GAC+GCPS++ TLK+GV ++ H+V Sbjct: 107 IEEVLNDKIRPAVAMDGGDIRLKSFKDGVAEVMLKGACAGCPSSTVTLKHGVERMIKHYV 166 Query: 181 PEVKDIR 187 PEV + Sbjct: 167 PEVTSVE 173 >gi|330813331|ref|YP_004357570.1| hypothetical protein SAR11G3_00356 [Candidatus Pelagibacter sp. IMCC9063] gi|327486426|gb|AEA80831.1| hypothetical protein SAR11G3_00356 [Candidatus Pelagibacter sp. IMCC9063] Length = 179 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 102/189 (53%), Gaps = 14/189 (7%) Query: 2 FIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 I DTPNP + KF+ ++ G+ + ++ + A ++F +Y +F+ Sbjct: 1 MITLTDTPNPESKKFVFDFDIVKSGSKEIKSIEDCKEIKFAEKLFDQVSPELIYIDSNFV 60 Query: 62 TVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 T+ K DW ++ +L ++ E ++ D + + E + QR Sbjct: 61 TIKKKSSQDWNEIKENILKILSEE-VNAD------------FEALSFEKSFEFKDEISQR 107 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I+EVL++++RPAVA DGGDI K Y+DGIV + ++G+C+GCPS++ TLK GV ++ H+V Sbjct: 108 IEEVLNDKIRPAVAMDGGDIQLKSYKDGIVEVMLKGSCAGCPSSTVTLKQGVERMIKHYV 167 Query: 181 PEVKDIRTV 189 PEV + V Sbjct: 168 PEVNSVIAV 176 >gi|71662836|ref|XP_818418.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70883670|gb|EAN96567.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 280 Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 66/195 (33%), Positives = 108/195 (55%), Gaps = 14/195 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG--AIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 + ++T +TPNP L+F ++ ++ ++ F NA A SPLA +FSI G+ +VY Sbjct: 62 LLVETSETPNPDCLRFYSMELSFLKPGFSMDFPNAGHAYKSPLAEILFSIDGVEAVYIAD 121 Query: 59 DFITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG-----DFIE 112 ++ITV K DW+ + P + I E ++ G +D+ SG + + Sbjct: 122 EYITVRKGHLVDWDAILPMIKESIEEFAERKMNVLSEEG------EDLLSGHNEDTEPKD 175 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 D V+ +KE+L R+RP + DGG++ + DG VF+ + GAC CPSAS TLK G+ Sbjct: 176 DDDEVILAVKELLATRIRPMLQADGGNVRYLDMDDGTVFVLLEGACKSCPSASVTLKNGI 235 Query: 173 ANILNHFVPEVKDIR 187 +L H++PEV +++ Sbjct: 236 ERMLMHWIPEVVEVQ 250 >gi|197106639|ref|YP_002132016.1| thioredoxin-like domain protein [Phenylobacterium zucineum HLK1] gi|196480059|gb|ACG79587.1| thioredoxin-like domain protein [Phenylobacterium zucineum HLK1] Length = 233 Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 69/189 (36%), Positives = 99/189 (52%), Gaps = 17/189 (8%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAK--EAEISPLASRIFSIPGIASVYFGY 58 M I TE TPNP KF+P L +G H + + SPLA+R+F++ + V Sbjct: 1 MLILTETTPNPEARKFLP-HARLTDGTAHAFDRTGFDPAASPLAARLFALGSVRHVLIAE 59 Query: 59 DFITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 DF+TV + D W LR + I +H SG P + G ++ S Sbjct: 60 DFVTVTRETDGEAWTTLRIKAIAEIADHLESGAPAVAAEGADPPDPEE----------SQ 109 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVAN 174 V I++VL VRP VARDGGD++F + G++++ M+GAC GCPS+ TLK G+ Sbjct: 110 VEGEIRQVLGLYVRPGVARDGGDVLFDRFEPDTGVLWIRMQGACGGCPSSRLTLKAGIEQ 169 Query: 175 ILNHFVPEV 183 I+ +VPEV Sbjct: 170 IVRRYVPEV 178 >gi|154339123|ref|XP_001562253.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134062836|emb|CAM39281.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 282 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 106/195 (54%), Gaps = 10/195 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLV--EGAIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 + ++T +TPNP L+F + E ++ + A SPLA +F + G+ +++ Sbjct: 64 LVVETNETPNPDCLRFFSMDFSFLKPEFSMDIPSPAHAYKSPLAEALFGVAGVQAIFLAD 123 Query: 59 DFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE---SD 114 +++TV KD Q DW L + +I+E S + ++ G ++ MG D E D Sbjct: 124 EYVTVRKDPQADWGALVHIIKEVIVEFAESKENVLSEAGEAEL----MGYNDDTEPNEDD 179 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 VV +KE+L R+RP + DGG++ F +G VFL + GAC CPS+ TLK G+ Sbjct: 180 DEVVLAVKELLATRIRPMLRADGGNVRFIDMDEGTVFLLLEGACKSCPSSHITLKSGIER 239 Query: 175 ILNHFVPEVKDIRTV 189 +L H++PEV +++ V Sbjct: 240 MLMHWIPEVVEVQEV 254 >gi|91216703|ref|ZP_01253668.1| nifU related protein [Psychroflexus torquis ATCC 700755] gi|91185172|gb|EAS71550.1| nifU related protein [Psychroflexus torquis ATCC 700755] Length = 302 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 104/181 (57%), Gaps = 4/181 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNP+ +KF+ + +++E A F + +AE+SPLA ++F P + ++ ++I+ Sbjct: 111 VYAESTPNPSVMKFVANKKLVLESA-EFKSIDDAELSPLAQKLFHFPFVKEIFMDDNYIS 169 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 + K D +WE + + G I ++ G I+ +G + K + + + + I Sbjct: 170 INKYDMAEWEEITNELRGFIKDYLEEGGKILESGKVQSKKTEAPSPEIDTSNLDDISKEI 229 Query: 122 KEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 ++L+ V+PAVA DGG+I+FK Y V + ++GACSGCPS++ TLK G+ ++L Sbjct: 230 VQILEEYVKPAVASDGGNIMFKSYNAESKDVQVILQGACSGCPSSTITLKNGIESMLKEM 289 Query: 180 V 180 + Sbjct: 290 L 290 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ + T P+ LKF + + + + N +EA SP+AS++F +P + +VY +FI Sbjct: 6 VEIKPTNKPSILKFEFNEFLTKQKGYEYHNIEEAMKSPIASQLFYLPFVKTVYISQNFIA 65 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPII 92 + K + +W ++ + +++H G I+ Sbjct: 66 IEKFNIVEWADVQNEISEQLLKHMNDGGKIV 96 >gi|255038627|ref|YP_003089248.1| nitrogen-fixing NifU domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254951383|gb|ACT96083.1| nitrogen-fixing NifU domain protein [Dyadobacter fermentans DSM 18053] Length = 198 Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 68/195 (34%), Positives = 104/195 (53%), Gaps = 16/195 (8%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHF------SNAKEAEISPLASRIFSIPGIASV 54 +F+ TE +PNP ++KF+ LV + F + +E + SPLA+ +F P + V Sbjct: 6 VFVYTELSPNPNSMKFVLN-FELVPDGLSFDYPSLEAALEEGKASPLAADLFQFPHVKRV 64 Query: 55 YFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIES 113 + +FIT+ K D WE + I +F P+ + K D + Sbjct: 65 FIASNFITITKGDDIAWEEVLRDTKQFIKIYFEENHPVF------EQKTIDTNTLIVDAR 118 Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG--IVFLSMRGACSGCPSASETLKYG 171 DS VQ+IK LD VRPAV DGG I F + +G +V + ++G+CSGCPS++ TLK G Sbjct: 119 DSDTVQKIKAALDQYVRPAVESDGGAINFHSFDEGSGVVKVLLQGSCSGCPSSTLTLKAG 178 Query: 172 VANILNHFVPEVKDI 186 + N+L VP+VK++ Sbjct: 179 IENLLTRMVPDVKEV 193 >gi|149525599|ref|XP_001517848.1| PREDICTED: similar to HIRA interacting protein 5 [Ornithorhynchus anatinus] Length = 180 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 60/154 (38%), Positives = 91/154 (59%), Gaps = 10/154 (6%) Query: 39 SPLASR-IFSIPGIASVYFGYDFITVGKDQ--YDWEHLRPPVLGMIMEHFISGDPIIHNG 95 S ASR +F I G+ SV+ G DFITV K+ DW L+P + IM+ F SG P++ Sbjct: 25 SGFASRHLFRIEGVKSVFLGPDFITVTKENEDVDWNLLKPDIYATIMDFFASGLPVVTE- 83 Query: 96 GLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMR 155 + + ES AVV I+ +L + RP V DGGD++++G+ DG+V L ++ Sbjct: 84 -----EAPSAEAARARESKDAVVL-IERLLSSMARPTVQEDGGDVIYRGFEDGVVQLKLQ 137 Query: 156 GACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 G+C+ CPS+ TLK G+ N+L ++PEV+ + V Sbjct: 138 GSCTSCPSSIVTLKSGIQNMLQFYIPEVEGVEQV 171 >gi|312129640|ref|YP_003996980.1| nitrogeN-fixing nifu domain protein [Leadbetterella byssophila DSM 17132] gi|311906186|gb|ADQ16627.1| nitrogen-fixing NifU domain protein [Leadbetterella byssophila DSM 17132] Length = 199 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/193 (36%), Positives = 98/193 (50%), Gaps = 14/193 (7%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGA-----IHFSNAKEAEISPLASRIFSIPGIASVYFG 57 I TE +PNP ++KF+ ++ EG S E + SPLAS +F + V+ Sbjct: 8 IYTELSPNPNSMKFVLNYEIVPEGLSFDYPTKASTFDEKKASPLASDLFLFDFVERVFIS 67 Query: 58 YDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 +FIT+ K DW+ + V I +F P+ + L GS DS Sbjct: 68 SNFITLTKRGDIDWDDVLGDVRQFIKTYFDENHPVFAQKTIDSHTLIVQGS------DSE 121 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVAN 174 VV +IK LD VRPAV DGG I F + + G V + ++G+CSGCPSAS TLK G+ Sbjct: 122 VVAKIKSTLDQYVRPAVESDGGAINFSSFEEESGTVKVLLQGSCSGCPSASLTLKAGIER 181 Query: 175 ILNHFVPEVKDIR 187 +L +PEVK + Sbjct: 182 LLTTMIPEVKSVE 194 >gi|325286802|ref|YP_004262592.1| nitrogen-fixing NifU domain-containing protein [Cellulophaga lytica DSM 7489] gi|324322256|gb|ADY29721.1| nitrogen-fixing NifU domain-containing protein [Cellulophaga lytica DSM 7489] Length = 300 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 101/181 (55%), Gaps = 4/181 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E+TPNPA ++F+ +++ V F N +EA+ S LA+ +F P + V+ ++I+ Sbjct: 109 VYAENTPNPAAMRFVANKLI-VPTIFEFKNKEEAKDSDLATTLFQFPYVKEVFLDENYIS 167 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 V K D+ DW + + I G ++ + K + + E+ ++I Sbjct: 168 VTKTDEADWNEITLELRESIQAFLTEGKEVVSANSISKQKQEAPATQLQDENLDDTSKQI 227 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETLKYGVANILNHF 179 ++L+ V+PAVA DGG+I+FK Y + V + ++GACSGCPS++ TLK G+ N+L + Sbjct: 228 IDILEEYVKPAVASDGGNIMFKSYDENTKKVNVILQGACSGCPSSTFTLKNGIENMLKNM 287 Query: 180 V 180 + Sbjct: 288 M 288 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 8 TPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK-D 66 T NPA LKF + + + N EA+ SPLA ++F +P I +VY +FI + + D Sbjct: 11 TTNPAILKFETNHFITKNNSYEYKNIDEAKNSPLAQQLFYLPFIKTVYISGNFIALERFD 70 Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIH 93 W+ +R V ++++ SG+ ++H Sbjct: 71 IVAWDDVRDEVAQQLVDYLNSGEVVVH 97 >gi|209883397|ref|YP_002287254.1| nifu protein [Oligotropha carboxidovorans OM5] gi|209871593|gb|ACI91389.1| nifu protein [Oligotropha carboxidovorans OM5] Length = 210 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 54/133 (40%), Positives = 82/133 (61%), Gaps = 5/133 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE+TP+P +KF+PG+ VL EG ++ + + A SPLA ++F+IPG+A V D Sbjct: 1 MFIQTEETPDPERMKFLPGREVLPEGTLNLKSREHAGSSPLAEQLFAIPGVAGVLLNKDS 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 I V + DW+HL+P +LG+IMEHF+SG P++ + + G E+D+ R Sbjct: 61 IVVTRSDSDWQHLKPAILGVIMEHFMSGAPVLRAPPAAPERTAESDGG---ETDA--TGR 115 Query: 121 IKEVLDNRVRPAV 133 I+E L + P + Sbjct: 116 IREALRKVIDPEL 128 >gi|227536308|ref|ZP_03966357.1| nifU domain protein [Sphingobacterium spiritivorum ATCC 33300] gi|300772344|ref|ZP_07082214.1| NifU domain protein [Sphingobacterium spiritivorum ATCC 33861] gi|227243915|gb|EEI93930.1| nifU domain protein [Sphingobacterium spiritivorum ATCC 33300] gi|300760647|gb|EFK57473.1| NifU domain protein [Sphingobacterium spiritivorum ATCC 33861] Length = 184 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 105/175 (60%), Gaps = 12/175 (6%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + TE TPNPAT+KF+ ++ L+ G++ + N ++A+ SP A +F + V+F +F+T Sbjct: 6 VYTESTPNPATMKFLVNKL-LINGSLDYPNKEKAQESPFAFELFKFNFVTGVFFASNFVT 64 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 + K D +W + I++ F+ G + + ++ D+ + + E V +I Sbjct: 65 ITKSDDVEWSDIEA-----ILKDFVKG-AVESELAVKEVHHDEDTNFEGTE----VEVKI 114 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++VL + VRPAV +DGG I +K + +GIV + +RG+CSGCPS++ TLK G+ +L Sbjct: 115 QQVLHDYVRPAVEQDGGAIHYKSFDNGIVTVELRGSCSGCPSSTITLKSGIEGLL 169 >gi|50292835|ref|XP_448850.1| hypothetical protein [Candida glabrata CBS 138] gi|49528163|emb|CAG61820.1| unnamed protein product [Candida glabrata] Length = 263 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 28/206 (13%) Query: 3 IQTEDTPNPATLKFIPGQVVLVE----GAIHFSNAKEAEIS--PLASRIFS-IPGIASVY 55 IQT TPN LKF+ L++ +I N + IS LAS+IF+ PG+ S+ Sbjct: 26 IQTLTTPNENALKFLNKDNELLQTRGSKSIVIKNTDQNLISHSDLASKIFAQCPGVESLM 85 Query: 56 FGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNG------------GLGDMKL 102 G DF+TV KD Q W ++ V+ ++ + SG +I + + +MK Sbjct: 86 IGDDFLTVNKDSQVPWAQIQSDVIDLLTQQLASGKNVISDEFHAIKEDNEAGYQINEMKF 145 Query: 103 DDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSG 160 D E D + + I+E+++ R+RPA+ DGGDI F+G+ G V+L ++GAC+ Sbjct: 146 D------LTEEDEEIKELIEELIETRIRPAILEDGGDIDFRGWDPESGTVYLKLQGACTS 199 Query: 161 CPSASETLKYGVANILNHFVPEVKDI 186 C S+ TLKYG+ ++L H+V EVK++ Sbjct: 200 CSSSEVTLKYGIESMLKHYVDEVKEV 225 >gi|261329222|emb|CBH12201.1| HIRA-interacting protein 5, putative [Trypanosoma brucei gambiense DAL972] Length = 280 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 106/190 (55%), Gaps = 4/190 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE--GAIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 + ++ +TPNP L+F ++ + ++ +A+ A SPLA +FSI G+ SV+ Sbjct: 61 IVVEKNETPNPDCLRFYSMELSFLPPGRSLDLPDAQHAGKSPLAELLFSISGVQSVFLAD 120 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 ++ITVGK DW L P + I+E SG I+ G +D+ D + D V Sbjct: 121 EYITVGKVPHVDWGSLVPQIQECIVEFAESGVGILSEEGEACF-VDNNNDTDPEDDDDEV 179 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +KE+L R+RP + DGG++ + DG VF+ + GAC CPS+ TLK G+ +L Sbjct: 180 VLAVKELLSARIRPLLRADGGNVRYISMDDGTVFVLLEGACKSCPSSGVTLKNGIERMLM 239 Query: 178 HFVPEVKDIR 187 H++PEV +++ Sbjct: 240 HWIPEVVEVQ 249 >gi|146299436|ref|YP_001194027.1| NifU domain-containing protein [Flavobacterium johnsoniae UW101] gi|146153854|gb|ABQ04708.1| nitrogen-fixing NifU domain protein [Flavobacterium johnsoniae UW101] Length = 299 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 95/178 (53%), Gaps = 4/178 (2%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TPNPA LKF+ ++ L A+ + N + SPLA +F P + V+ ++I+V K Sbjct: 111 ETTPNPAALKFVVSRM-LTRNAVEYKNIDQTASSPLAQELFKFPYVKEVFIDENYISVTK 169 Query: 66 DQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEV 124 + DW+ + + I + +G ++ + +D+ + + Q+I + Sbjct: 170 YEINDWQEITLELRTFIKQFIENGGTVLDESLIQTATKNDVTKDEAFDKLDVTSQQIINI 229 Query: 125 LDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 L+ V+PAVA DGG+I F Y D V + ++GACSGCPS++ TLK G+ N+L + Sbjct: 230 LEEYVKPAVAADGGNIAFDSYNEDDKTVKVILQGACSGCPSSTFTLKSGIENMLKSML 287 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I ++T NP LKF + + F N EA+ SPLA ++F +P + +VY +FI Sbjct: 4 ITIKETQNPTILKFEFEDFITQNQSFEFKNIDEAQASPLAQQLFYLPFVKTVYISGNFIA 63 Query: 63 VGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIH 93 + + DW+ ++ V I G II Sbjct: 64 IERYSIVDWDDVKDAVAEQITSFVDKGGVIIK 95 >gi|332291487|ref|YP_004430096.1| nitrogen-fixing NifU domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332169573|gb|AEE18828.1| nitrogen-fixing NifU domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 300 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 101/182 (55%), Gaps = 4/182 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNP+TLKF+ + LV A F + + +P+A +F +P + V+F ++I+ Sbjct: 109 VYAESTPNPSTLKFVANKK-LVTTAFEFKSIDDTANAPMAKALFHLPYVKEVFFDENYIS 167 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 V K D +W+ + I ++ G I+ L + + + + E+ + + I Sbjct: 168 VQKYDVAEWDEVVTETREFIRDYIQDGKEIVTAAQLKTPQQAEAIAEEKFETLDDISKEI 227 Query: 122 KEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +++ V+PAVA DGG+I+FK Y + V + ++GACSGCPS++ TLK G+ N+L Sbjct: 228 VNIIEEYVKPAVASDGGNIMFKNYDPKTQNVSVILQGACSGCPSSTFTLKNGIENMLKQM 287 Query: 180 VP 181 +P Sbjct: 288 LP 289 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E T NPA KF Q ++ + F N EA SPLA ++F +P + +VY +F+ Sbjct: 6 ISVEGTSNPAIKKFQADQFLVNHNSYEFKNIDEAANSPLAQQLFYLPFVKTVYITQNFVA 65 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHF 85 + K + +W ++ V I ++ Sbjct: 66 IEKYNIVEWIDVQQEVANQIEDYL 89 >gi|221103919|ref|XP_002156303.1| PREDICTED: similar to GK25604 [Hydra magnipapillata] Length = 192 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 103/192 (53%), Gaps = 14/192 (7%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIH-----FSNAKEAEISPLASRIFSIPGIASVYFG 57 I TE +PNP ++KF+ + EG S +E++ SPLA +F P + ++ Sbjct: 2 IYTELSPNPNSMKFVLNFELAPEGLTFDYPSLASTVEESKASPLAGDLFQFPFVRRIFIA 61 Query: 58 YDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 +FIT+ KD + +WE + + + F +P+ + D + +DSA Sbjct: 62 SNFITITKDDETEWEDIVYDIKKFMKIFFEQNNPVFAQKTI------DKNTLIVDANDSA 115 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVAN 174 V+ +IK LD VRPAV DGG I F + + G V + ++G+CSGCPS++ TLK G+ Sbjct: 116 VIAKIKSTLDQYVRPAVESDGGAINFASFDEISGQVKVYLQGSCSGCPSSTVTLKDGIER 175 Query: 175 ILNHFVPEVKDI 186 +L VPEVK++ Sbjct: 176 LLKTMVPEVKEV 187 >gi|72391004|ref|XP_845796.1| HIRA-interacting protein 5 [Trypanosoma brucei TREU927] gi|62176423|gb|AAX70531.1| HIRA-interacting protein 5, putative [Trypanosoma brucei] gi|70802332|gb|AAZ12237.1| HIRA-interacting protein 5, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 280 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 65/190 (34%), Positives = 106/190 (55%), Gaps = 4/190 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE--GAIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 + ++ +TPNP L+F ++ + ++ +A+ A SPLA +FSI G+ SV+ Sbjct: 61 IVVEKNETPNPDCLRFYSMELSFLPPGRSLDLPDAQHAGKSPLAELLFSISGVQSVFLAD 120 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 ++ITVGK DW L P + I+E SG ++ G +D+ D + D V Sbjct: 121 EYITVGKVPHVDWGSLVPQIQECIVEFAESGVGVLSEEGEACF-VDNNNDTDPEDDDDEV 179 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +KE+L R+RP + DGG++ + DG VF+ + GAC CPS+ TLK G+ +L Sbjct: 180 VLAVKELLSARIRPLLRADGGNVRYISMDDGTVFVLLEGACKSCPSSGVTLKNGIERMLM 239 Query: 178 HFVPEVKDIR 187 H++PEV +++ Sbjct: 240 HWIPEVVEVQ 249 >gi|305665213|ref|YP_003861500.1| NifU-like protein [Maribacter sp. HTCC2170] gi|88709966|gb|EAR02198.1| nifU related protein [Maribacter sp. HTCC2170] Length = 300 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 102/181 (56%), Gaps = 4/181 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNP+ +KF+ + + V A F N EA+ S LA ++F +P + V+F ++++ Sbjct: 109 VYAEVTPNPSVMKFVSNKRI-VPTAFEFKNIDEAKDSALAQQLFQLPFVKEVFFDENYVS 167 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 V K D +WE + P+ M+ + G+ ++ + + S ES ++I Sbjct: 168 VNKFDVAEWEDITMPLREMVRDFLAEGNEVVTVSAITLKSAEAPKSQLNNESLDDTSKQI 227 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHF 179 ++L+ V+PAVA DGG+I+F+ Y V + ++GACSGCPS++ TLK G+ +L + Sbjct: 228 VDILEEYVKPAVASDGGNILFQSYEKDTKTVNVILQGACSGCPSSTFTLKNGIETMLKNM 287 Query: 180 V 180 + Sbjct: 288 M 288 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I + T NPA LKF + F N EA+ SPLA ++F +P I +VYF +FI Sbjct: 6 ITVKQTNNPAVLKFETNHFITKNNNYEFKNIDEAKNSPLAQQLFYLPFIKTVYFSGNFIG 65 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPII 92 + + D +W ++ V ++E+ SG+PI+ Sbjct: 66 LERFDIVEWADVKDEVAQQLVEYLNSGEPIV 96 >gi|322492565|emb|CBZ27842.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 281 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 106/192 (55%), Gaps = 4/192 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLV--EGAIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 + ++T +TPNP ++F + + E ++ + +A SPLA +F + G+ +V+ Sbjct: 63 IVVETNETPNPDCIRFFSMDISFLKPEFSVDIPSPAQAYKSPLAEALFGVAGVQAVFLAD 122 Query: 59 DFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 +++TV K Q DW L P + +I+E S + ++ G ++ L + E D V Sbjct: 123 EYVTVRKHPQEDWAALMPIIKEVIVEFAESKENVLSAAGEEEL-LGYNNDTEPDEDDDEV 181 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +KE+L R+RP + DGG++ F +G VFL + GAC CPS+ TLK G+ +L Sbjct: 182 VLAVKELLATRIRPMLRADGGNVRFIDMDEGTVFLLLEGACKSCPSSHITLKSGIERMLM 241 Query: 178 HFVPEVKDIRTV 189 H++PEV + + V Sbjct: 242 HWIPEVVEAQEV 253 >gi|86130774|ref|ZP_01049373.1| NifU-like protein [Dokdonia donghaensis MED134] gi|85818185|gb|EAQ39345.1| NifU-like protein [Dokdonia donghaensis MED134] Length = 300 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 100/182 (54%), Gaps = 4/182 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNP+T+KF+ + LV + F + + +P+A +F P + V+F ++I+ Sbjct: 109 VYAESTPNPSTIKFVANKK-LVTTSFEFKSIDDTANAPMAKALFHFPFVKEVFFDENYIS 167 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 V K D +W+ + I ++ G I+ L + D + + E+ V + I Sbjct: 168 VQKYDMAEWDEVVTETREFIRDYIQDGKEIVTAEQLKTPQQVDAIAEEKFETLDDVSKEI 227 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLS--MRGACSGCPSASETLKYGVANILNHF 179 +++ V+PAVA DGG+IVFK Y + +S ++GACSGCPS++ TLK G+ N+L Sbjct: 228 VNIIEEYVKPAVASDGGNIVFKHYDEKTQNVSVILQGACSGCPSSTFTLKNGIENMLKQM 287 Query: 180 VP 181 +P Sbjct: 288 LP 289 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E T NPA KF Q ++ + F N EA SPLA ++F +P + +VY +F+ Sbjct: 6 ISVEGTSNPAIKKFQADQFLVNHNSYEFKNIDEAANSPLAQQLFYLPFVKTVYIAQNFVA 65 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHF 85 + K + +W ++ V + ++ Sbjct: 66 IEKYNIVEWIDVQQEVANQVEDYL 89 >gi|313677059|ref|YP_004055055.1| scaffold protein nfu/nifu [Marivirga tractuosa DSM 4126] gi|312943757|gb|ADR22947.1| Scaffold protein Nfu/NifU [Marivirga tractuosa DSM 4126] Length = 198 Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 106/190 (55%), Gaps = 11/190 (5%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 I E PNP +LKF Q+++ EG + F + ++ +PLA +F + V++ +FI Sbjct: 11 IYMEANPNPNSLKFATNQMLVPEGDSFDFPSIEDTAQAPLAEILFKKEYVDRVFYMSNFI 70 Query: 62 TVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 TV K +Y+W ++ V I E SG +I +++ D+ ++ + ++ Sbjct: 71 TVTKKPEYEWVEIQNDVKDTIKEFLESGKRVI------ELQAKDLFEETNTSENAELEEQ 124 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETLKYGVANILNH 178 IK +LD ++PAV +DGG I F Y V L ++GACSGCPS++ TLK G+ N+L Sbjct: 125 IKNILDEYIKPAVEQDGGAISFHSYEKDTQRVNLLLQGACSGCPSSTITLKAGIENLLKR 184 Query: 179 FVP-EVKDIR 187 +P +VK+++ Sbjct: 185 MLPNDVKEVQ 194 >gi|157870953|ref|XP_001684026.1| hypothetical protein [Leishmania major strain Friedlin] gi|68127094|emb|CAJ04535.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 240 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 107/192 (55%), Gaps = 4/192 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLV--EGAIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 + ++T +TPNP ++F + + E ++ ++ +A SPLA +F + G+ +V+ Sbjct: 22 IVVETNETPNPDCMRFFSMDLSFLKPEFSMDITSPAQAYKSPLAEALFGVAGVQAVFLAD 81 Query: 59 DFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 +++TV K Q DW L P + +I+E S + ++ G ++ L + E D V Sbjct: 82 EYVTVRKHPQADWAALIPIIKEVIVEFAESKENVLSAAGEEEL-LGYNNDTEPDEDDDEV 140 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +KE+L R+RP + DGG++ F +G VFL + G+C CPS+ TLK G+ +L Sbjct: 141 VLAVKELLATRIRPMLRADGGNVRFIDMDEGTVFLLLEGSCKSCPSSHITLKSGIERMLM 200 Query: 178 HFVPEVKDIRTV 189 H++PEV + + V Sbjct: 201 HWIPEVVEAQEV 212 >gi|146089377|ref|XP_001470367.1| hypothetical protein [Leishmania infantum JPCM5] gi|134070400|emb|CAM68738.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 284 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 107/195 (54%), Gaps = 10/195 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLV--EGAIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 + ++T +TPNP ++F V + E ++ + +A SPLA +F + G+ +V+ Sbjct: 66 IVVETNETPNPDCMRFFSMDVSFLKPEFSMDIPSPAQAYKSPLAEALFGVAGVQAVFLAD 125 Query: 59 DFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE---SD 114 +++TV K Q DW L P + +I+E S + ++ G ++ +G + E D Sbjct: 126 EYVTVRKHPQADWAALIPIIKEVIVEFAESKENVLSAAGEEEL----LGYNNDTEPDDDD 181 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 VV +KE+L R+RP + DGG++ F +G VFL + G+C CPS+ TLK G+ Sbjct: 182 DEVVLAVKELLATRIRPMLRADGGNVRFIDMDEGTVFLLLEGSCKSCPSSHVTLKSGIER 241 Query: 175 ILNHFVPEVKDIRTV 189 +L H++PEV + + V Sbjct: 242 MLMHWIPEVVEAQEV 256 >gi|322499834|emb|CBZ34907.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 284 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 107/195 (54%), Gaps = 10/195 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLV--EGAIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 + ++T +TPNP ++F V + E ++ + +A SPLA +F + G+ +V+ Sbjct: 66 IVVETNETPNPDCMRFFSMDVSFLKPEFSMDIPSPAQAYKSPLAEALFGVAGVQAVFLAD 125 Query: 59 DFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE---SD 114 +++TV K Q DW L P + +I+E S + ++ G ++ +G + E D Sbjct: 126 EYVTVRKHPQADWAALIPIIKEVIVEFAESKENVLSAAGEEEL----LGYNNDTEPDDDD 181 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 VV +KE+L R+RP + DGG++ F +G VFL + G+C CPS+ TLK G+ Sbjct: 182 DEVVLAVKELLATRIRPMLRADGGNVRFIDMDEGTVFLLLEGSCKSCPSSHVTLKSGIER 241 Query: 175 ILNHFVPEVKDIRTV 189 +L H++PEV + + V Sbjct: 242 MLMHWIPEVVEAQEV 256 >gi|320584117|gb|EFW98328.1| hypothetical protein HPODL_0008 [Pichia angusta DL-1] Length = 250 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 109/204 (53%), Gaps = 18/204 (8%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLV----EGAIHFSNAKEA-EISPLASRIFSIPGIASVY 55 + ++T TPN LKFI + A+ ++ EA + SPLAS +F + G+ S+ Sbjct: 24 LSLKTVGTPNENALKFISTDFNFLPESLTSAVEVNDLPEASQRSPLASELFKLNGVKSLL 83 Query: 56 FGYDFITVGK--------DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGS 107 G++FITV K W+ L V+ +I S P+++ L ++ Sbjct: 84 IGHNFITVNKVDPELSNNPDLHWDSLSTKVMNVITNAVDSNIPVLNPEYLDEIV---RKQ 140 Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSAS 165 + E D V IKE+++ R+RPA+ DGGDI F+ + G V+L ++GAC C + Sbjct: 141 DEAQEDDDDVTYEIKELINTRIRPALQDDGGDIHFRSFDAESGTVYLKLQGACKSCSLSE 200 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 +TLK G+ ++L H++PEV++++ V Sbjct: 201 DTLKNGIESMLKHYIPEVEEVKAV 224 >gi|332877772|ref|ZP_08445513.1| NifU-like protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684352|gb|EGJ57208.1| NifU-like protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 298 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 98/178 (55%), Gaps = 5/178 (2%) Query: 5 TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIF-SIPGIASVYFGYDFITV 63 TE TPNPA +KF+ + LV I + +A EA +PLA +F + P I V+F D+I+V Sbjct: 110 TETTPNPAVMKFVANKR-LVPTIIEYKSATEAAEAPLAQALFQAFPFITEVFFDNDYISV 168 Query: 64 GK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIK 122 K D DWE P + I ++ + +I+ + + + + Q+I Sbjct: 169 TKTDTADWEEESPRLRAFIKDYLAAEKTVINISEVKKWQTAVQAHLLSKVTTDPISQQIV 228 Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETLKYGVANILNH 178 +++ V+PAVA DGG+I F Y+ V + ++GACSGCPS+++TLK G+ IL + Sbjct: 229 AIIEEHVKPAVASDGGNIQFISYQPDTHHVEVLLQGACSGCPSSTQTLKKGIEAILKN 286 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 2/93 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + + T NP +K + LV+G+ + N EA+ +PLA +F +P I +VY +FI Sbjct: 6 LTVQPTANPDIIK-LEANRPLVKGSYEYKNVDEAKNAPLAKELFYLPFIKTVYISSNFIA 64 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHN 94 + + +W+ ++ V I + SG P+++N Sbjct: 65 LKRFPIIEWKDVQEEVAQQIAVYLQSGRPLVNN 97 >gi|254495078|ref|ZP_05108002.1| NifU-like protein [Polaribacter sp. MED152] gi|85819428|gb|EAQ40585.1| NifU-like protein [Polaribacter sp. MED152] Length = 301 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 105/189 (55%), Gaps = 18/189 (9%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYDFI 61 + E TPNPA +KF + L + + + N +EA + SPLA IF+ P + V+ ++I Sbjct: 110 VYAEVTPNPAVMKFGTNKA-LTQTDVEYKNIEEASKSSPLAQAIFNFPFVKEVFISDNYI 168 Query: 62 TVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ- 119 +V K D +W + V I E+ + G II + L + + E + VV+ Sbjct: 169 SVTKYDMVEWNEVFAEVRSFIREYLVDGKTIIKD-------LPTVETSKTPEVVAPVVEL 221 Query: 120 -----RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGV 172 +I ++LD ++PAVA DGG+I F+ Y ++ +V + ++GACSGCPS++ TLK G+ Sbjct: 222 EGIPAQISDILDEYIKPAVAGDGGNIAFRSYDEQNKVVSVILQGACSGCPSSTATLKNGI 281 Query: 173 ANILNHFVP 181 ++L +P Sbjct: 282 ESLLKEMLP 290 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 2/93 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I ++T N LKF +V++ G+ FSN EA+ SPLA ++F +P + V+ +FI Sbjct: 6 ITIQETTNETILKFNSTKVLINGGSYEFSNIDEAKNSPLAQQLFYLPFVKKVFITANFIA 65 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHN 94 + + D +W ++ V I E +IS I+ N Sbjct: 66 IQRFDIVEWADVQDEVAEQI-EAYISDGNIVVN 97 >gi|225012214|ref|ZP_03702651.1| nitrogen-fixing NifU domain protein [Flavobacteria bacterium MS024-2A] gi|225003769|gb|EEG41742.1| nitrogen-fixing NifU domain protein [Flavobacteria bacterium MS024-2A] Length = 295 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 102/182 (56%), Gaps = 8/182 (4%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNPA +KF+ + LV ++ F N EA+ +PLA ++F +P + V+ ++++ Sbjct: 108 VYAESTPNPAVMKFVANKP-LVSHSVEFKNIDEAKNAPLAQKLFHLPFVKEVFIDANYVS 166 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 + K + +WE + V I G+ I+ + +++D + +A ++I Sbjct: 167 ITKFEVTEWEEVVMEVREFIRAFIEEGNVILTEAPIA-IEIDQKNQSSNL---TATEEQI 222 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +LD ++PAVA DGG+I+F Y + V + ++GACSGCPS++ TLK G+ +L Sbjct: 223 VSILDEYIKPAVASDGGNIMFDSYDEVEKEVHVVLQGACSGCPSSTFTLKNGIETMLKEM 282 Query: 180 VP 181 +P Sbjct: 283 MP 284 >gi|299132121|ref|ZP_07025316.1| Scaffold protein Nfu/NifU [Afipia sp. 1NLS2] gi|298592258|gb|EFI52458.1| Scaffold protein Nfu/NifU [Afipia sp. 1NLS2] Length = 213 Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 4/131 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE+T + L+F+PG+ VL EG ++ ++A SPLA ++F+IPG+A V D Sbjct: 1 MFIQTEETQDSERLRFLPGREVLPEGTLNLKTKEQAASSPLAEQLFTIPGVAGVLLNKDS 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 I V + DW+HL+P +LG IMEHF+SG P++ G E D+ + Sbjct: 61 IVVTRSGSDWQHLKPAILGAIMEHFMSGAPVVRTPPGASAHASASGE----EGDATATGQ 116 Query: 121 IKEVLDNRVRP 131 I+E L + P Sbjct: 117 IREALRRVIDP 127 >gi|88802135|ref|ZP_01117663.1| NifU protein [Polaribacter irgensii 23-P] gi|88782793|gb|EAR13970.1| NifU protein [Polaribacter irgensii 23-P] Length = 301 Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 102/188 (54%), Gaps = 13/188 (6%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEIS-PLASRIFSIPGIASVYFGYDFI 61 + E TPNPA +KF + L + + F N EA S PLA IF+ P + V+ ++I Sbjct: 109 VYAEVTPNPAVMKFGTNKA-LTQTDVEFKNIDEASASSPLAQAIFNFPFVQQVFISDNYI 167 Query: 62 TVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ- 119 +V K D +W + V I E+ G II K + + + + + V++ Sbjct: 168 SVTKYDMVEWNEVYGEVRTFIREYLADGKTIIKELP----KEEVVETANKAQEPEVVLEG 223 Query: 120 ---RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVAN 174 +I ++LD ++PAVA DGG+I F+ Y + +V + ++GACSGCPS++ TLK G+ N Sbjct: 224 ISAQIVDILDEYIKPAVASDGGNIAFRSYDEQTKVVRVILQGACSGCPSSTATLKNGIEN 283 Query: 175 ILNHFVPE 182 +L +P+ Sbjct: 284 LLKEMLPD 291 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 2/93 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I ++T N +K+ +++ G+ F+N EA+ SPLA +F +P + V+ +FI Sbjct: 6 ITIQETTNNTIIKYNSNTILINGGSYEFNNIDEAKNSPLAQELFYLPFVKKVFITANFIA 65 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHN 94 + + D +W ++ V I E F++ I+ N Sbjct: 66 IQRFDILEWIDVQEEVKEQI-EAFLNDGNIVVN 97 >gi|124006329|ref|ZP_01691163.1| NifU domain protein [Microscilla marina ATCC 23134] gi|123987986|gb|EAY27657.1| NifU domain protein [Microscilla marina ATCC 23134] Length = 197 Score = 103 bits (258), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 104/190 (54%), Gaps = 11/190 (5%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGA-IHFSNAKEAEISPLASRIFS-IPGIASVYFGYDF 60 I TE PNP +LK++ +++ +G F +A+ A+ SPLA+ +FS + V+ +F Sbjct: 11 IYTESNPNPNSLKYVINYMLVPDGTTFDFPDAETAQQSPLATELFSKFSYVDRVFMMSNF 70 Query: 61 ITV-GKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K++ DW + V + + P++ + D + + + + + Sbjct: 71 VTVTKKEEADWHDVAGEVKEFLQGYLEEQKPLLTQD------IQDEYDKELNKDEPEIDR 124 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IK +L+ VRPAV DGG I F Y +G V + ++G+CSGCPS+ TLK G+ N+L Sbjct: 125 KIKGILEEYVRPAVESDGGAINFHSYENGTVKVLLQGSCSGCPSSMVTLKSGIENLLKRM 184 Query: 180 VPEVKDIRTV 189 +PE D++ V Sbjct: 185 LPE--DVKEV 192 >gi|90076830|dbj|BAE88095.1| unnamed protein product [Macaca fascicularis] Length = 199 Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 59/133 (44%), Positives = 79/133 (59%), Gaps = 12/133 (9%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT++TPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 59 MFIQTQNTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 118 Query: 61 ITVGKDQ--YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDF-IESDSAV 117 ITV K+ DW L+P + IM+ F SG P++ ++ SG+ E D V Sbjct: 119 ITVTKENEDLDWNLLKPDIYATIMDFFASGLPLV---------TEETPSGEAGSEEDDEV 169 Query: 118 VQRIKEVLDNRVR 130 V IKE+LD R+R Sbjct: 170 VAMIKELLDTRIR 182 >gi|284037367|ref|YP_003387297.1| nitrogen-fixing NifU domain protein [Spirosoma linguale DSM 74] gi|283816660|gb|ADB38498.1| nitrogen-fixing NifU domain protein [Spirosoma linguale DSM 74] Length = 200 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/193 (34%), Positives = 101/193 (52%), Gaps = 21/193 (10%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAK------EAEISPLASRIFSIPGIASVYF 56 I TE +PNP ++KF+ LV + F A + + SPLA +F + V+ Sbjct: 11 IFTEGSPNPNSMKFV-VNFELVPTGLSFDYATPGDALLDGKASPLAVALFGFEFVRRVFI 69 Query: 57 GYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGL--GDMKLDDMGSGDFIES 113 +F+TV KD + DW+ + V + ++F P+ + KLD Sbjct: 70 SANFVTVTKDDETDWDEVLLEVKLFLKDYFGEQKPVFSQRTVDTNTTKLD---------M 120 Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYG 171 DS VQ+IK VL+ ++PAV DGG I F + + G V + ++G+CSGCPS++ TLK G Sbjct: 121 DSETVQKIKAVLEQYIKPAVESDGGAISFYSFDEPSGTVKVLLQGSCSGCPSSTLTLKAG 180 Query: 172 VANILNHFVPEVK 184 + N+L VPEVK Sbjct: 181 IENLLTRLVPEVK 193 >gi|163786509|ref|ZP_02180957.1| thioredoxin-related protein [Flavobacteriales bacterium ALC-1] gi|159878369|gb|EDP72425.1| thioredoxin-related protein [Flavobacteriales bacterium ALC-1] Length = 300 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 4/181 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNP+ LKF+ +V LV F++ +EA+ SPLA+ +F P I +++ +FI+ Sbjct: 109 VYAESTPNPSVLKFVCNKV-LVPSLYEFTSIEEAKPSPLATALFQFPFIKNIFIEKNFIS 167 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 + K D +WE + + + + G I+++ + + E+ + I Sbjct: 168 ITKFDIIEWEDITLQLREFLKSYIEDGKTILNDDAPQKLNKTEEAIEQKFEALDDTSKNI 227 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETLKYGVANILNHF 179 +L+ ++PAV DGG+I FK Y V + ++GACSGCPS++ TLK G+ N+L Sbjct: 228 VNILEEYIKPAVESDGGNIEFKSYDANTKKVEVLLQGACSGCPSSTFTLKNGIENMLKEM 287 Query: 180 V 180 + Sbjct: 288 L 288 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 2/86 (2%) Query: 8 TPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK-D 66 T N LKF + + + F+N +A+ SPLA ++F +P + VY +FI + + + Sbjct: 11 TSNETILKFEADRFLTNHNSFEFNNIDDAKHSPLAQQLFYLPFVKKVYIATNFIAIERYN 70 Query: 67 QYDWEHLRPPVLGMIMEHFISGDPII 92 +W+ ++ V I E ++S D ++ Sbjct: 71 IVEWKDVQNEVAAQI-EDYLSNDGVV 95 >gi|260060626|ref|YP_003193706.1| nifU related protein [Robiginitalea biformata HTCC2501] gi|88784756|gb|EAR15925.1| nifU related protein [Robiginitalea biformata HTCC2501] Length = 300 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 102/182 (56%), Gaps = 6/182 (3%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNPA +K++ + LV F + +A SPLA ++F P + V+ +++I+ Sbjct: 109 VYAEVTPNPAVMKYVANKQ-LVPDVFEFKDIDQARHSPLAQKLFGFPFVKEVFMDHNYIS 167 Query: 63 VGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDM-KLDDMGSGDFIESDSAVVQR 120 V K + +WE + + I E+ +G ++ G + ++ + G+ + D + Q Sbjct: 168 VTKYEVAEWEDVSMELREFIREYLAAGGEVLEPGASAEKSQIAGVPEGNLEQMDP-ISQE 226 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 I +L+ V+PAVA DGG+IVF+ Y V + ++GACSGCPS++ TLK G+ +L + Sbjct: 227 IAGILEEYVKPAVASDGGNIVFQSYEAESKTVHVILQGACSGCPSSTFTLKNGIQTMLQN 286 Query: 179 FV 180 + Sbjct: 287 MM 288 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I ++T NPA LKF Q ++ +G+ + N EA+ SPLA ++F +P I +VY +F+ Sbjct: 6 ITLKETNNPAILKFEANQPLVTKGSYEYKNIDEAKDSPLAQQLFYLPFIKTVYISGNFVA 65 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPII 92 + + D W+ ++ V ++E+ +G+P++ Sbjct: 66 MERFDIVTWDDVKQEVAQQLVEYLNAGEPVV 96 >gi|86140721|ref|ZP_01059280.1| NifU-like domain protein [Leeuwenhoekiella blandensis MED217] gi|85832663|gb|EAQ51112.1| NifU-like domain protein [Leeuwenhoekiella blandensis MED217] Length = 301 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 99/182 (54%), Gaps = 6/182 (3%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNPA LKF+ + ++ E + F N EA+ +PLA +F P + V+ ++++ Sbjct: 110 VYAESTPNPAVLKFVTNKKIVTE-TLEFKNIDEAKNAPLALALFHFPFVKEVFMDSNYVS 168 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPII-HNGGLGDMKLDDMGSGDFIESDSAVVQR 120 V K D +W+ + V I + G II N +++ +F E+ + Sbjct: 169 VQKYDVAEWDDVFQEVREFIKTYIEEGKEIISENFKKTPQAVEEQKEVEF-EAMDDTSKE 227 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 I +++ V+PAVA DGG+I+FK Y V + ++GACSGCPS++ TLK G+ N+L Sbjct: 228 IANIIEEYVKPAVASDGGNILFKHYDPESKNVKVILQGACSGCPSSTFTLKNGIENMLKE 287 Query: 179 FV 180 + Sbjct: 288 ML 289 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 2/91 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E T NPA KF ++ + F N EA+ SPLA ++F +P + +VY +FI Sbjct: 6 ITIEPTSNPAIKKFQANSFLVDHNSYEFKNIDEAKNSPLAQQLFYLPFVKTVYISQNFIA 65 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPII 92 + K + +W ++ + I E+F++ + ++ Sbjct: 66 IEKFNIVEWIDIQDELSAQI-ENFLNDNGVV 95 >gi|323336723|gb|EGA77987.1| Nfu1p [Saccharomyces cerevisiae Vin13] Length = 174 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 85/142 (59%), Gaps = 12/142 (8%) Query: 56 FGYDFITVGKDQY-DWEHLRPPVLGMIMEHFISGDPII--------HNGGLGDMKLDDMG 106 G DF+T+ KD+ W ++P ++ ++ + G+ +I G G K++ M Sbjct: 2 IGDDFLTINKDRMVHWNSIKPEIIDLLTKQLAXGEDVISKEFHAVQEEEGEGGYKIN-MP 60 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSA 164 + E D V + I+E++D R+RPA+ DGGDI ++G+ + G V+L ++GAC+ C S+ Sbjct: 61 KFELTEEDEEVSELIEELIDTRIRPAILEDGGDIDYRGWDPKTGTVYLRLQGACTSCSSS 120 Query: 165 SETLKYGVANILNHFVPEVKDI 186 TLKYG+ ++L H+V EVK++ Sbjct: 121 EVTLKYGIESMLKHYVDEVKEV 142 >gi|57335931|emb|CAH25367.1| nifU-like protein [Guillardia theta] Length = 183 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/128 (44%), Positives = 77/128 (60%), Gaps = 8/128 (6%) Query: 64 GKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKE 123 GKDQ+ W ++P V I++ + SG II DM D + E DS +V IKE Sbjct: 31 GKDQHSWAEMKPEVFDAILDFYASGQSIIT--AEEDMPQDTKVN----EDDSEIVAMIKE 84 Query: 124 VLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVP 181 +LD R+RPAV DGGDI F G+ + G V + ++GACS C S+ TLK GV N+L H+VP Sbjct: 85 LLDTRIRPAVQDDGGDISFIGFDEETGRVTVRLQGACSTCSSSKVTLKSGVENMLMHYVP 144 Query: 182 EVKDIRTV 189 EV ++ V Sbjct: 145 EVTEVVAV 152 >gi|298206804|ref|YP_003714983.1| NifU-like domain protein [Croceibacter atlanticus HTCC2559] gi|83849436|gb|EAP87304.1| NifU-like domain protein [Croceibacter atlanticus HTCC2559] Length = 305 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 102/188 (54%), Gaps = 21/188 (11%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E TPNP+ LKF+ + ++V+ F + + +PLA +F+ P + ++ ++++ Sbjct: 109 IYAESTPNPSVLKFVANKKLVVQSE-EFKSIDDTANAPLAQALFNFPFVKEIFIDENYVS 167 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIH-----------NGGLGDMKLDDMGSGDF 110 + K D +W + + I +H +SG P++ NGG + D+ D Sbjct: 168 IQKYDMAEWGDITTELRDFISQHIMSGKPVVTEHRANKLAPQTNGGTTEKPQLDLSHLD- 226 Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETL 168 ++ A+V E+LD ++PAVA DGG+I+F Y + V + ++GACSGCPS++ TL Sbjct: 227 -DTSKAIV----EILDEYIKPAVASDGGNIMFDSYDEETKSVKVILQGACSGCPSSTMTL 281 Query: 169 KYGVANIL 176 K G+ +L Sbjct: 282 KNGIETML 289 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I + T NP+ LKF + + + F N EA+ SPLA ++F +P + +VY +FI Sbjct: 5 IDIQSTSNPSILKFETNKFLSRHDSFEFHNIDEAKPSPLAQKLFYLPFVKTVYIAQNFIA 64 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPII 92 + K D +W ++ V I+E+ SG+ +I Sbjct: 65 IQKYDIAEWSDVQDEVKSQILEYLNSGEDVI 95 >gi|163753913|ref|ZP_02161036.1| thioredoxin-related protein [Kordia algicida OT-1] gi|161326127|gb|EDP97453.1| thioredoxin-related protein [Kordia algicida OT-1] Length = 301 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 4/181 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E TPNP +KF+ + + V+ F N E + +PLA +F P + ++ ++I+ Sbjct: 110 IYAESTPNPTVMKFVANKKI-VDRIFEFKNIDETKYAPLAQSLFHFPFVKEIFLDKNYIS 168 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 + K D +W + + I + G +I + K S + E + + I Sbjct: 169 ITKYDMVEWNDITMEIREFIRNYIQEGREVISKDIPVEQKEKIQISDESFEELDDISKEI 228 Query: 122 KEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +L+ ++PAVA DGG+I+F Y IV + ++GACSGCPS++ TLK G+ N L + Sbjct: 229 VNILEEYIKPAVASDGGNIMFDSYDPNSKIVKVVLQGACSGCPSSTMTLKSGIENTLKNL 288 Query: 180 V 180 + Sbjct: 289 L 289 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 5/97 (5%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E T NPA +KF + + F N EA+ SPLA ++F +P + +++ +FI Sbjct: 6 ISIEKTSNPAIIKFEASTFLSRHNSYEFKNIDEAKDSPLAQQLFYLPFVKTIFISGNFIA 65 Query: 63 VGKDQYD---WEHLRPPVLGMIMEHFISGDPIIHNGG 96 + ++Y+ WE ++ V I + G +I Sbjct: 66 I--ERYNIVTWEDVQDEVAEQIQNYINEGKEVISESA 100 >gi|294936237|ref|XP_002781672.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] gi|239892594|gb|EER13467.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] Length = 262 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 105/197 (53%), Gaps = 25/197 (12%) Query: 3 IQTEDTPNPATLKFI--PGQVVLVEGAIHFSNAK-EAEISPLASRIFSIPGIASVYFGYD 59 + E TPNP+ + F G+ +L +GA S K + SPLA+ +F I G+ V Sbjct: 31 VSAEATPNPSAMIFTLEGGKPILGKGAKSMSFEKTQCGGSPLAASLFRIHGVDKVLLAAR 90 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHF-------ISGDPIIHNGGLGDMKLDDMGSGDFI 111 TV K + +WE L+P V +I + F ++ D I + D DD Sbjct: 91 HATVTKSPETEWEMLKPNVELVISQFFDIPNVKPVAPDTIEYTQEGQDQHNDD------- 143 Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLK 169 VV+ I E+L+ R++P V RDGGD+ F + G++ + + G+C+GCP +S TLK Sbjct: 144 -----VVKSIHEILEQRIKPFVERDGGDVEFIAFDSDTGVLQIRLVGSCAGCPKSSVTLK 198 Query: 170 YGVANILNHFVPEVKDI 186 +G+ ++ H++PEVK++ Sbjct: 199 FGIQRMVCHYIPEVKNV 215 >gi|327289878|ref|XP_003229651.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like, partial [Anolis carolinensis] Length = 129 Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 54/131 (41%), Positives = 78/131 (59%), Gaps = 9/131 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F++ SPLA ++F I G+ SV+FG DF Sbjct: 6 MFIQTQDTPNPNSLKFIPGKPVLESRTMEFTSPASTYCSPLARQLFRIEGVKSVFFGADF 65 Query: 61 ITVGKDQ--YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +TV K+ DW ++P + IM+ + SG P++ + + + S E D VV Sbjct: 66 VTVTKESEDVDWNLIKPDIYATIMDFYASGLPVVTDEA---PRPETAPS----EEDDEVV 118 Query: 119 QRIKEVLDNRV 129 IKE+LD R+ Sbjct: 119 SMIKELLDTRI 129 >gi|225011341|ref|ZP_03701795.1| nitrogen-fixing NifU domain protein [Flavobacteria bacterium MS024-3C] gi|225004524|gb|EEG42492.1| nitrogen-fixing NifU domain protein [Flavobacteria bacterium MS024-3C] Length = 301 Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 101/183 (55%), Gaps = 8/183 (4%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E TPNP+ +K++ +++ V F N EA+ +PLA +F +P + V+ ++I+ Sbjct: 110 IYAESTPNPSVMKYVANKLI-VPALFEFKNIDEAKDAPLAKELFLMPFVKEVFMDQNYIS 168 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA--VVQ 119 V K D +WE + + I +SG + G K + + +D+ + Sbjct: 169 VTKYDVAEWEEINNELREKIRLFLMSGQESV--GANTVQKEKEKAPTTLLHTDNLDDTSK 226 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILN 177 +I ++L+ V+PAVA DGG+I+F Y + V + ++GACSGCPS++ TLK G+ N+L Sbjct: 227 QIVDILEEYVKPAVASDGGNIMFDSYDEVSKTVNVILQGACSGCPSSTFTLKNGIENMLK 286 Query: 178 HFV 180 + + Sbjct: 287 NMM 289 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 5/88 (5%) Query: 8 TPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKDQ 67 T NP +KF + + F N +A+ SPLA ++F +P + +VY +FI G ++ Sbjct: 12 TNNPNIMKFETNHFISPDKNYEFQNIDQAKESPLAQQLFHLPFVKTVYISSNFI--GIEK 69 Query: 68 YD---WEHLRPPVLGMIMEHFISGDPII 92 YD WE ++ + ++++ +G ++ Sbjct: 70 YDIVGWEDIKDSLGQQLVDYLNTGAAVV 97 >gi|319953626|ref|YP_004164893.1| nitrogen-fixing nifu domain-containing protein [Cellulophaga algicola DSM 14237] gi|319422286|gb|ADV49395.1| nitrogen-fixing NifU domain-containing protein [Cellulophaga algicola DSM 14237] Length = 300 Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 28/193 (14%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNPA +KF+ + + V A F N EA+ S LA ++F P + V+F ++ + Sbjct: 109 VYAESTPNPAVMKFVSNKTI-VPTAFEFKNIDEAKDSELAKKLFHFPFVKEVFFDENYAS 167 Query: 63 VGKDQY-DWEH----LRPPVLGMIME--HFISGDPIIHNGG------LGDMKLDDMGSGD 109 V K + DW +R + I + +S + ++ L D LDD Sbjct: 168 VTKYEVADWNEVTFDIRELIRNFIADGLEVVSAESVVKKKAEAPKTQLQDANLDDTS--- 224 Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASET 167 ++I ++L+ V+PAVA DGG+I+FK Y V + ++GACSGCPS++ T Sbjct: 225 ---------KKIIDILEEYVKPAVASDGGNIMFKSYDKETKTVNVILQGACSGCPSSTYT 275 Query: 168 LKYGVANILNHFV 180 LK G+ ++L + + Sbjct: 276 LKNGIESMLKNMM 288 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 7 DTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK- 65 +T NPA LKF + + + EA+ SPLA ++F +P + +VY +FI + + Sbjct: 10 ETNNPAILKFDTNHFITKSNNYEYKDIDEAKNSPLAQQLFYLPFVKTVYISANFIALERF 69 Query: 66 DQYDWEHLRPPVLGMIMEHFISGDPII 92 +W+ ++ V ++E+ SG+P+I Sbjct: 70 SIVEWDDVKDEVAQQLVEYLNSGEPVI 96 >gi|126663121|ref|ZP_01734119.1| thioredoxin-related protein [Flavobacteria bacterium BAL38] gi|126624779|gb|EAZ95469.1| thioredoxin-related protein [Flavobacteria bacterium BAL38] Length = 299 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 96/174 (55%), Gaps = 4/174 (2%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TPNP+ LKF+ ++ L + A+ N E SPLA +F P + ++ ++I+V K Sbjct: 111 ETTPNPSVLKFVCNKL-LTKTALECKNIDETIASPLAKELFKFPFVKEIFIDENYISVTK 169 Query: 66 -DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEV 124 +W+ + + I E+ +G+ +I + ++ + ++ Q+I + Sbjct: 170 FAVTEWDEITLELRTFIKEYIENGNTVIDETAIVKTEIHQKQQEAYFDTLDVTSQQIINI 229 Query: 125 LDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++ V+PAV DGG+I+F+ + + V + ++GACSGCPS++ TLK G+ N+L Sbjct: 230 IEEYVKPAVQSDGGNIMFESFDPIEKRVKVILQGACSGCPSSTFTLKNGIENML 283 Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I T+ T NPA +KF + ++ F N E + SPLA ++F +P + +VY +FI Sbjct: 4 IATKITQNPAIVKFELDENIVRSENFEFKNIDETQNSPLAKQLFFLPFVKTVYVSGNFIA 63 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIH 93 + K +WE ++ V I E +G II Sbjct: 64 IEKFSIVEWEDVQEDVANQINEFISNGGEIIK 95 >gi|297266190|ref|XP_001096379.2| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like [Macaca mulatta] Length = 196 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/186 (34%), Positives = 95/186 (51%), Gaps = 36/186 (19%) Query: 10 NPATLKFIP----GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 NP T+K P Q L F N +ISPL +I G+ SV+FG DFITV K Sbjct: 28 NPYTIKKQPLHQFVQRPLFPLPAAFCNP--GKISPLLKQI---EGVKSVFFGPDFITVTK 82 Query: 66 DQ--YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKE 123 + DW L+P + IM+ F SG P++ ++ SG+ Sbjct: 83 ENEDLDWNLLKPDIYATIMDFFASGLPLV---------TEETPSGE-------------- 119 Query: 124 VLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEV 183 + P V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L ++PEV Sbjct: 120 --AGNMLPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFYIPEV 177 Query: 184 KDIRTV 189 + + V Sbjct: 178 EGVEQV 183 >gi|323304101|gb|EGA57879.1| Nfu1p [Saccharomyces cerevisiae FostersB] Length = 174 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 84/142 (59%), Gaps = 12/142 (8%) Query: 56 FGYDFITVGKDQY-DWEHLRPPVLGMIMEHFISGDPII--------HNGGLGDMKLDDMG 106 G DF+T+ KD+ W ++P ++ ++ + + +I G G K++ M Sbjct: 2 IGDDFLTINKDRMVHWNSIKPEIIDLLTKQLAYXEDVISKEFHAVQEEEGEGGYKIN-MP 60 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSA 164 + E D V + I+E++D R+RPA+ DGGDI ++G+ + G V+L ++GAC+ C S+ Sbjct: 61 KFELTEEDEEVSELIEELIDTRIRPAILEDGGDIDYRGWDPKTGTVYLRLQGACTSCSSS 120 Query: 165 SETLKYGVANILNHFVPEVKDI 186 TLKYG+ ++L H+V EVK++ Sbjct: 121 EVTLKYGIESMLKHYVDEVKEV 142 >gi|149369678|ref|ZP_01889530.1| thioredoxin-related protein [unidentified eubacterium SCB49] gi|149357105|gb|EDM45660.1| thioredoxin-related protein [unidentified eubacterium SCB49] Length = 306 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 95/180 (52%), Gaps = 10/180 (5%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TPNPA LKF+ + LV G F N +A+ +PLA+ +F+ P + V+ ++I+V K Sbjct: 112 ETTPNPAVLKFVANKP-LVTGTFDFKNIDDAKHAPLATALFNFPFVKEVFMSNNYISVMK 170 Query: 66 -DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGD-MKLDDMGSGDFIE-----SDSAVV 118 D +W+ + + I + G I + L + +K + E S S + Sbjct: 171 YDIAEWDEISMQLREFIRSYIEDGKEIFTDAMLNETIKEEQKAVASPTENGSDKSYSDID 230 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANIL 176 I ++LD ++PAVA DGG I F Y V + ++GACSGCPSA+ TLK G+ +L Sbjct: 231 NEIMDILDEYIKPAVASDGGHIAFDSYDANTKTVKVILQGACSGCPSATVTLKNGIETML 290 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 8 TPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK-D 66 T N +KF+ + + F N +EA SP+A ++F +P + +VY +FI + K + Sbjct: 11 TNNENIVKFVANSFLTQAKSYEFKNIEEAVESPIAQQLFYLPFVKTVYISQNFIAIEKYN 70 Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIHNGG 96 W+ ++ V I E+ SG P+++ Sbjct: 71 IVSWDMVQDEVAESINEYIESGKPVVNESA 100 >gi|332519966|ref|ZP_08396430.1| nitrogen-fixing NifU domain protein [Lacinutrix algicola 5H-3-7-4] gi|332044525|gb|EGI80719.1| nitrogen-fixing NifU domain protein [Lacinutrix algicola 5H-3-7-4] Length = 300 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 4/181 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNP+ +KF+ + + A F +A+ SPLA+ +F +P + SV+ ++++ Sbjct: 109 VYAESTPNPSVIKFVANKKI-ANAAYEFVTIDDAKPSPLATELFHLPFVKSVFIDENYVS 167 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 V K D +W+ + + I + G II ++ E+ + I Sbjct: 168 VTKYDVAEWQEITNELREFIRSYIEDGKEIISANAPEAIEKSTKNVDAHFETLDDTSKEI 227 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +L+ V+PAVA DGG+I F+ Y V + ++GACSGCPS++ TLK G+ N+L Sbjct: 228 VNILEEYVKPAVASDGGNIQFESYNADTKTVKVILQGACSGCPSSTFTLKNGIENMLKEM 287 Query: 180 V 180 + Sbjct: 288 L 288 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 1/97 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + ++T N + +KF Q + + F+N EA+ SPLA +F +P + VY +FI Sbjct: 6 VTIQETSNNSIIKFELNQFITQHQSFEFNNIDEAKESPLAQELFYLPFVKKVYITSNFIA 65 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLG 98 + + + +W+ ++ V I + G +I Sbjct: 66 IERFNIVEWKDVQDEVSEQIKAYLNKGGIVITENATS 102 >gi|326334857|ref|ZP_08201058.1| nitrogen-fixing NifU domain protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692894|gb|EGD34832.1| nitrogen-fixing NifU domain protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 295 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 98/185 (52%), Gaps = 21/185 (11%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E TPNP +KF+ + LV + +A+EA SPLA+ +F P + V+F ++I+ Sbjct: 110 IYVESTPNPMAMKFVANKK-LVSRVYEYKSAQEAAESPLAAALFKFPYVKEVFFDSNYIS 168 Query: 63 VGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH------NGGLGDMKLDDMGSGDFIESDS 115 V + + WE + + I ++ ++G P++ + G L+D+ S Sbjct: 169 VIRQPKILWEEVMMELREFIRQYLMAGKPVVRVIVEDGDRPKGLPTLNDIYS-------- 220 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVA 173 ++I +LD ++PAV+ DGG+I F Y +V + M+GAC+GCPS+ TLK G+ Sbjct: 221 ---RKIIAILDQYIKPAVSSDGGNIQFVSYDKESQVVKVLMQGACNGCPSSKLTLKQGIE 277 Query: 174 NILNH 178 IL Sbjct: 278 AILRE 282 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 2/93 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M + + T NPA +K + V+LV+G+ F+ ++AE SPLA + +IP I +V+ +F Sbjct: 1 MRLDIQRTTNPAIIK-LEAPVILVKGSYQFTTEEQAENSPLAKELLAIPFIKTVFISANF 59 Query: 61 ITV-GKDQYDWEHLRPPVLGMIMEHFISGDPII 92 I + +W+ + V + + G PI+ Sbjct: 60 IALEALPIVEWDDVAQEVALQVEAYLRRGAPIL 92 >gi|8571395|gb|AAF76865.1|AF232919_4 NifU-like protein [Sinorhizobium meliloti] Length = 63 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 41/63 (65%), Positives = 55/63 (87%) Query: 127 NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 RVRPAVA+DGGDI F+G++DG VFL+M+GACSGCPS++ TL++GV N+L HFVPEV+ + Sbjct: 1 TRVRPAVAQDGGDITFRGFKDGTVFLNMKGACSGCPSSTATLRHGVQNLLRHFVPEVEAV 60 Query: 187 RTV 189 +V Sbjct: 61 ESV 63 >gi|17946069|gb|AAL49077.1| RE53788p [Drosophila melanogaster] Length = 134 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 47/108 (43%), Positives = 65/108 (60%), Gaps = 7/108 (6%) Query: 82 MEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIV 141 M+ F SG P++++ + +E D V IKE+LD R+RP V DGGDIV Sbjct: 1 MDFFASGLPVLNDAQPN-------ADTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIV 53 Query: 142 FKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 F GY G+V L M+G+CS CPS+ TLK GV N+L ++PEV+ + V Sbjct: 54 FMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQV 101 >gi|300776224|ref|ZP_07086083.1| nitrogen-fixing NifU [Chryseobacterium gleum ATCC 35910] gi|300505357|gb|EFK36496.1| nitrogen-fixing NifU [Chryseobacterium gleum ATCC 35910] Length = 292 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 20/191 (10%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIAS-VYFGYDFI 61 I E TPNP +KF+ ++ L+EG + + AE PLA IF A+ V+ +F+ Sbjct: 103 IYAEMTPNPNVMKFVSSKL-LMEGFVEVKSKDAAEEVPLAQAIFKEFDFATEVFISDNFV 161 Query: 62 TVGKDQ-YDWEHLRPPVLGMIMEHFISG------DPIIHNGGLGDMKLDDMGSGDFIESD 114 V +D +W + V +I E+ +G +P H + + + + D+ E + Sbjct: 162 AVTRDNSVEWHQVMMTVRALIAEYLQNGGEISKIEPQKHENPV-----EKIINRDYTEDE 216 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGV 172 Q+I ++L+ V PAV DGG I Y + + ++GACSGCPS++ TLK G+ Sbjct: 217 ----QKISDILNEYVAPAVENDGGKISLMEYDQENKTAKMLLQGACSGCPSSTATLKNGI 272 Query: 173 ANILNHFVPEV 183 NIL FVP++ Sbjct: 273 ENILKQFVPDL 283 >gi|213962175|ref|ZP_03390439.1| nitrogen-fixing NifU domain protein [Capnocytophaga sputigena Capno] gi|213955181|gb|EEB66499.1| nitrogen-fixing NifU domain protein [Capnocytophaga sputigena Capno] Length = 300 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 100/179 (55%), Gaps = 5/179 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFS-IPGIASVYFGYDFI 61 + TE TPNP +KF+ + LV I + + +EA +P+A+ + + P I V+F ++I Sbjct: 109 VYTETTPNPTVMKFVANKR-LVPTVIEYKSIEEATEAPMAATLLTRFPFIEEVFFDDNYI 167 Query: 62 TVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ++ K +WE + + I ++ G PII+ + + + + + + Q+ Sbjct: 168 SLTKKGMEEWEMIAADLRDYIRKYLSEGRPIINPSEIKRRQEEAQARLLSMVTTDEISQQ 227 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGY-RDGI-VFLSMRGACSGCPSASETLKYGVANILN 177 I +++ V+PAVA DGG+I F Y RD V + ++GACSGCPS+++TLK G+ IL Sbjct: 228 IVAIIEQYVKPAVASDGGNIQFISYNRDTHHVEVLLQGACSGCPSSTQTLKKGIEVILK 286 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 2/93 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 + ++ + T NP +K + LV+G+ F N EA+ +PLA +F +P + +VY +F Sbjct: 4 LTLKIQPTANPDIIK-LEANRPLVKGSYEFKNIDEAKNAPLAKELFYLPFVKTVYISSNF 62 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPII 92 I + + +W+ ++ V ++ + SG I+ Sbjct: 63 IALKRFPIVEWKEVQEEVAQQVLVYLQSGKDIL 95 >gi|315223924|ref|ZP_07865769.1| nitrogen-fixing NifU domain protein [Capnocytophaga ochracea F0287] gi|314946096|gb|EFS98100.1| nitrogen-fixing NifU domain protein [Capnocytophaga ochracea F0287] Length = 299 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 96/178 (53%), Gaps = 5/178 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFS-IPGIASVYFGYDFI 61 + TE TPNP+ +KF+ + LV I + + KE + +P+A +F+ P I V+F ++I Sbjct: 107 VYTETTPNPSVMKFVANKR-LVPTIIEYKHIKETDEAPMAKALFTQFPFIEEVFFDDNYI 165 Query: 62 TV-GKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +V KD +W + P + I + G +I + + + + + V ++ Sbjct: 166 SVTKKDNKEWAMVTPNIREFIKNYLSEGHTLISSSEIKRHQQATQERLLSMVTTDEVSKQ 225 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLS--MRGACSGCPSASETLKYGVANIL 176 I ++D V+PAVA DGG+I F Y ++ ++GACSGCPS++ TLK G+ IL Sbjct: 226 IVAIIDEFVKPAVASDGGNIQFISYNPETHYVEVILQGACSGCPSSTLTLKKGIEVIL 283 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 2/95 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + + T +P +K + LV+G+ + N EA+ SPLA +F +P + +VY +FI Sbjct: 6 LSVQPTSSPDIIK-LEANKALVKGSYEYKNIDEAKNSPLAKELFYLPFVKTVYISSNFIA 64 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGG 96 + + +W+ ++ V ++ + SG I+ G Sbjct: 65 LKRFPIIEWKDVQEEVAQQVLLYLQSGREIVSTEG 99 >gi|325955388|ref|YP_004239048.1| nitrogen-fixing NifU domain-containing protein [Weeksella virosa DSM 16922] gi|323438006|gb|ADX68470.1| nitrogen-fixing NifU domain-containing protein [Weeksella virosa DSM 16922] Length = 295 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 98/182 (53%), Gaps = 5/182 (2%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFS-IPGIASVYFGYDFITVG 64 E TPNPA +KF+ ++ LV I + ++A+ P+A+ IF P I V+ ++I++ Sbjct: 106 EMTPNPAVMKFVSNKL-LVPSIIEIKSREKAQNVPIATAIFQEYPFIEEVFIAENYISLT 164 Query: 65 K-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKE 123 K D W+ V ++ + + I ++ ++ + IE + V Q+IK Sbjct: 165 KNDTESWDLWTMDVRSFVLSYLQTDGKIFNDDYEFVTEIPHEVAIKSIEEMTDVEQQIKA 224 Query: 124 VLDNRVRPAVARDGGDIVFKGYRDGIVFLSM--RGACSGCPSASETLKYGVANILNHFVP 181 +LD V+PAVA DGG+I + + M +GACSGCPS++ TLK+G+ +L +P Sbjct: 225 ILDEYVQPAVANDGGNIELIEFDEQTKTAKMLLQGACSGCPSSTATLKHGIEGLLKQMLP 284 Query: 182 EV 183 EV Sbjct: 285 EV 286 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 5/95 (5%) Query: 3 IQTEDTPNPATLKFI-PGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 I TE+TPNP LKF+ P Q L G + + AE SPLA + + P I V+ +F+ Sbjct: 4 IYTENTPNPNILKFVCPTQ--LTAGGVEYKKDDSAENSPLAQVLLTFPFIDKVFITANFV 61 Query: 62 TVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNG 95 + K D WE + ++ +I EH+ D II+ Sbjct: 62 ALEKIDTIKWEDVSDDLIEIIQEHY-DDDAIIYES 95 >gi|325115956|emb|CBZ51510.1| Nitrogen-fixing NifU, C-terminal, related [Neospora caninum Liverpool] Length = 191 Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 9/176 (5%) Query: 23 LVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKDQ-YDWEHLRPPVLGMI 81 L G I + + SPLA +F I G +SV D++TV K + DW L PV I Sbjct: 4 LKRGMIDVLSVRAEGASPLADCLFKIDGTSSVLIAGDYVTVVKAKDTDWGDLEEPVKRSI 63 Query: 82 MEHFISGDPIIH------NGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVAR 135 ++H +SG P I + + + + + + + + I+E+L R RP + Sbjct: 64 LDHLMSGLPAIQPVASSEEISVPEGRRQEPQQQSKPDEEEDLSEAIRELLHMRARPMLQA 123 Query: 136 DGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 DGGD+ + + GIV++ ++G+C GCPS+ T+K G+ +L +++PEV+D+R Sbjct: 124 DGGDLEMMRFDEETGIVWVHLKGSCEGCPSSLITVKRGMKQMLQYYIPEVEDVRQC 179 >gi|295132490|ref|YP_003583166.1| nifU related protein [Zunongwangia profunda SM-A87] gi|294980505|gb|ADF50970.1| nifU related protein [Zunongwangia profunda SM-A87] Length = 309 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 95/186 (51%), Gaps = 13/186 (6%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNP +KF+ + +++ A F N +A SPLA ++F P + V+ ++++ Sbjct: 109 VYAESTPNPKVMKFVANRKLVLHAA-EFKNIDDAAESPLAQKLFHFPFVKEVFIDENYVS 167 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDF---------IE 112 + K D W+ + + I G+ +++N + GS I+ Sbjct: 168 INKYDVASWDEITMELREFIRNFIQEGNSVLNNDAITGAPEGKNGSETSKTAPKPQINID 227 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG--IVFLSMRGACSGCPSASETLKY 170 Q++ +L+ ++PAVA DGG+I+F Y + V + ++GACSGCPS++ TLK Sbjct: 228 ELDDTSQQVVAILEEYIKPAVASDGGNILFDSYNEESRTVKVILQGACSGCPSSTMTLKS 287 Query: 171 GVANIL 176 G+ +L Sbjct: 288 GIETML 293 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I + T P +KF + + F N EA SP+A ++F +P + +VY +FI Sbjct: 6 INIQHTTQPEIVKFEANKFLTKHENFEFKNIDEAAKSPIAQQLFYLPFVKTVYISQNFIA 65 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPII 92 + K D W + V I + G +I Sbjct: 66 IEKYDIVAWPEVENEVAEQIQNYLNKGGIVI 96 >gi|89889561|ref|ZP_01201072.1| thioredoxin containing NifU domain [Flavobacteria bacterium BBFL7] gi|89517834|gb|EAS20490.1| thioredoxin containing NifU domain [Flavobacteria bacterium BBFL7] Length = 214 Score = 94.0 bits (232), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 101/185 (54%), Gaps = 8/185 (4%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNP+ +KF+ + ++V + F + + + LA ++++ P + +Y ++++ Sbjct: 21 VYAEATPNPSVMKFVANKKLVV-NSTEFKSIADTADNTLARQLYNFPFVKEIYADENYVS 79 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPI---IHNGGLGDMKLDDMGSGDFIESDSAVV 118 + K D W+ + + I E +G I H G + +++ F E+ V Sbjct: 80 IQKHDIASWDEVTFEIRSFIKEAIENGAEIGSSKHEAGTVKKEGENIELPKF-ENLDDVS 138 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETLKYGVANIL 176 +++ E+LD ++PAVA DGG+IVF Y + V + ++GACSGCPS++ TLK G+ +L Sbjct: 139 KKVVEILDEYIKPAVASDGGNIVFDSYDENTKEVKVILQGACSGCPSSTMTLKSGIETML 198 Query: 177 NHFVP 181 +P Sbjct: 199 RDMLP 203 >gi|50593019|ref|NP_001002757.1| NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 3 [Homo sapiens] gi|50593023|ref|NP_001002756.1| NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 3 [Homo sapiens] gi|114577881|ref|XP_001137265.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 3 [Pan troglodytes] gi|114577883|ref|XP_001137343.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 4 [Pan troglodytes] gi|114577885|ref|XP_001137421.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 5 [Pan troglodytes] gi|332226736|ref|XP_003262548.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like isoform 4 [Nomascus leucogenys] gi|332226738|ref|XP_003262549.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like isoform 5 [Nomascus leucogenys] gi|332226740|ref|XP_003262550.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like isoform 6 [Nomascus leucogenys] Length = 113 Score = 94.0 bits (232), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 68/108 (62%), Gaps = 8/108 (7%) Query: 82 MEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIV 141 M+ F SG P++ + + GS E D VV IKE+LD R+RP V DGGD++ Sbjct: 1 MDFFASGLPLVTE----ETPSGEAGS----EEDDEVVAMIKELLDTRIRPTVQEDGGDVI 52 Query: 142 FKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 +KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L ++PEV+ + V Sbjct: 53 YKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFYIPEVEGVEQV 100 >gi|42521822|ref|NP_967202.1| putative nitrogen-fixing protein NifU [Bdellovibrio bacteriovorus HD100] gi|39574352|emb|CAE77856.1| putative nitrogen-fixing protein NifU [Bdellovibrio bacteriovorus HD100] Length = 186 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 11/188 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 + I+ + TPNP KF+ + VL +G +++AKEAE S LAS +F + G+ V+F + Sbjct: 6 VLIRIQATPNPNAWKFVLDRAVLNDGKATYADAKEAEQSILASSLFQVEGVRQVHFFQNV 65 Query: 61 ITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 IT+ + D E ++ V +I + HN + M + VQ Sbjct: 66 ITITHNFDADPEEIQRNVCSVIQTRMPA-----HNPAVTQMDEKKLRRASL----PPEVQ 116 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL-NH 178 +I+E+LD VRP + DGGD+ Y D +++ +GAC CPSA+ + IL + Sbjct: 117 QIEEILDQTVRPGLQGDGGDLDVVKYEDNKLYVFYQGACGTCPSATSGTLMAIEGILRDQ 176 Query: 179 FVPEVKDI 186 F P ++ I Sbjct: 177 FNPTIEVI 184 >gi|149912092|ref|ZP_01900681.1| hypothetical protein PE36_11562 [Moritella sp. PE36] gi|149804829|gb|EDM64868.1| hypothetical protein PE36_11562 [Moritella sp. PE36] Length = 215 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 5/178 (2%) Query: 10 NPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKD-QY 68 +P T KFI + + G F+N + A SPL ++F++PG+A+V +T+ K+ Sbjct: 21 DPDTCKFIVSRTLHPGGPFFFANKERAAGSPLGEQLFALPGVANVLIAESIVTICKEPTA 80 Query: 69 DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNR 128 W L+ + I ++G P I L D +G SD+ ++ I+ +LD Sbjct: 81 SWSGLKAAIGTAIRAQLLTGVPAI----LEMYIHTDTQTGMQRRSDAELITVIQGLLDKE 136 Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 + ++A GG I R G +++SM G C GC SA TL+ G +L PE+++I Sbjct: 137 INRSIANHGGKISIVEIRQGKLYISMSGGCQGCASAQVTLRQGFEVMLKRVAPEIEEI 194 >gi|150026140|ref|YP_001296966.1| hypothetical protein FP2102 [Flavobacterium psychrophilum JIP02/86] gi|149772681|emb|CAL44164.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86] Length = 298 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 97/187 (51%), Gaps = 6/187 (3%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNPA +KF+ + L + + N + SPLA +F P + ++ ++++ Sbjct: 107 VYAESTPNPAVMKFVASKK-LTKTIVECKNIDQTHASPLAKELFKFPFVKEIFIDENYLS 165 Query: 63 VGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 + K +W+ + + I E +G ++ + K ++ ++ Q+I Sbjct: 166 ITKYAVAEWQEITLELRTFIKEFIENGKIVVDETKIVATKHEEKQEITNFDNLDVTSQKI 225 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETLKYGVANILNHF 179 +++ +RPAVA DGG+I+F Y V + ++GACSGCPS++ TLK G+ ++L Sbjct: 226 INIIEEYIRPAVAADGGNILFDSYCQDTKQVKVILQGACSGCPSSTFTLKNGIESMLKDM 285 Query: 180 V--PEVK 184 + PE++ Sbjct: 286 LNQPELR 292 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 8/96 (8%) Query: 2 FIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 I +DT NP LKF + + + N EA SPLA ++F +P + +VY +FI Sbjct: 3 LITIKDTNNPNILKFEFSYFITPNQSYEYKNIDEAGASPLAQQLFYLPFVKTVYISGNFI 62 Query: 62 TVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGG 96 + K + WE ++ V ME F+S NGG Sbjct: 63 AIEKYNIVQWEDVKHDVADQ-MEAFVS------NGG 91 >gi|322827929|gb|EFZ31905.1| hypothetical protein TCSYLVIO_1772 [Trypanosoma cruzi] Length = 261 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/198 (33%), Positives = 97/198 (48%), Gaps = 17/198 (8%) Query: 1 MFIQTEDTPNPATLKF-IPGQVVLVEGAIHFSNAKE------AEISPLASRIFSIPG--I 51 M + TPNP L F IP +G I E A + PL++ IF G + Sbjct: 11 MQLHAAPTPNPLCLAFHIPSSTY--DGFIPNGQTCEVAHRGLAWVHPLSNGIFEQYGQEV 68 Query: 52 ASVYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDF 110 ASV+ +++ DW L + I + + + + + DD+ Sbjct: 69 ASVFIAPRHVSITVYPNVDWSTLEWSISSFIGHYLLFVNECVPAAKEYTLMEDDLR---I 125 Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETL 168 E DS V+Q IKE+L +VRP V RDGGD+ + D G+V L+M GAC CPS+S TL Sbjct: 126 HEEDSEVLQCIKELLREQVRPMVQRDGGDVKLLNFNDETGVVSLAMLGACRTCPSSSNTL 185 Query: 169 KYGVANILNHFVPEVKDI 186 K G+ ++ HF+PEV ++ Sbjct: 186 KDGIERVMKHFLPEVTEV 203 >gi|313206892|ref|YP_004046069.1| nitrogen-fixing nifu domain protein [Riemerella anatipestifer DSM 15868] gi|312446208|gb|ADQ82563.1| nitrogen-fixing NifU domain protein [Riemerella anatipestifer DSM 15868] Length = 292 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 10/186 (5%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIAS-VYFGYDFI 61 I E TPNP+ +KF+ +++L EG + + +EA PLA IF A V+ +F+ Sbjct: 103 IYAEMTPNPSVMKFVASRLLL-EGFVEVKSREEAAEVPLAQAIFKEFDFAQEVFISDNFV 161 Query: 62 TVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNG-GLGDMKLDDMGSGDFIESDSAVVQ 119 V KD W + I E+ +G + H + ++ + + ++ +++ Q Sbjct: 162 AVTKDDSVQWHEVMVVTRAFIAEYLQNGGEVSHKEPQKHENPVEKIINREYTDTE----Q 217 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSM--RGACSGCPSASETLKYGVANILN 177 +I ++L+ V PAV DGG I Y + M +GACSGCPS++ TLK G+ N+L Sbjct: 218 KISDILNEYVAPAVENDGGKISLMEYDESTKTAKMLLQGACSGCPSSTATLKGGIENVLK 277 Query: 178 HFVPEV 183 F+P++ Sbjct: 278 QFLPDL 283 Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 2/84 (2%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E T NP +KF+ L+ G++ + PLA +F+ P + ++ +FI V K Sbjct: 7 EATENPRVMKFV-ADYNLIPGSLELDRNSDISEIPLAQELFNYPFVDKIFITANFIAVAK 65 Query: 66 -DQYDWEHLRPPVLGMIMEHFISG 88 D +WEH+ + +I + ++ Sbjct: 66 QDTVEWEHVVQSLKNVIEDELLAN 89 >gi|255534458|ref|YP_003094829.1| nifU related protein [Flavobacteriaceae bacterium 3519-10] gi|255340654|gb|ACU06767.1| nifU related protein [Flavobacteriaceae bacterium 3519-10] Length = 292 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 95/190 (50%), Gaps = 16/190 (8%) Query: 2 FIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIAS-VYFGYDF 60 I +E TPNP +KF+ L++G + + EA PLA IF G A ++ +F Sbjct: 102 LIYSEMTPNPMVMKFV-SSTELLDGFVEVKSPAEAGEVPLAKAIFDEFGFAKEIFISGNF 160 Query: 61 ITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGG----LGDMKLDDMGSGDFIESDS 115 + V K+ +W + + M FI+ + NGG + K + + Sbjct: 161 VAVTKNVSVEWHEVM-----ITMRDFIAN--YLQNGGAISNIATQKHETPVESSIQRDYT 213 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG--IVFLSMRGACSGCPSASETLKYGVA 173 A Q+I ++LD V PAVA DGG I Y + + ++GACSGCPS++ TLK G+ Sbjct: 214 ANEQKISDILDEYVAPAVAGDGGKISLIEYDEASKTAKMLLQGACSGCPSSTATLKGGIE 273 Query: 174 NILNHFVPEV 183 NIL FVPE+ Sbjct: 274 NILKQFVPEL 283 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E T NP LKF+ L+ G++ + PLA ++ + P + ++ +FI Sbjct: 4 ILIEATENPKVLKFV-ADYNLLPGSLELDRQSDISEIPLAQKLLNFPFVDRIFITANFIA 62 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISG 88 V K D +WE + + +I + I+ Sbjct: 63 VAKQDTVEWEFVADSLKNVIEDELIAN 89 >gi|71666135|ref|XP_820030.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70885357|gb|EAN98179.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 261 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 97/198 (48%), Gaps = 17/198 (8%) Query: 1 MFIQTEDTPNPATLKF-IPGQVVLVEGAIHFSNAKE------AEISPLASRIFSIPG--I 51 M + TPNP L F IP +G I E A + PL++ IF G + Sbjct: 11 MQLHAAPTPNPLCLAFHIPSSTY--DGFIPNGQTCEVAHRGLAWVHPLSNGIFEQYGQEV 68 Query: 52 ASVYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDF 110 ASV+ +++ DW L + I + + + + + DD+ Sbjct: 69 ASVFIAPRHVSITVYPNVDWSTLEWSISSFIGHYLLFVNECVPAAKEYTLMEDDL---RI 125 Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETL 168 E DS V+Q IKE+L +VRP V RDGGD+ + + G+V L+M GAC CPS+S TL Sbjct: 126 HEEDSEVLQCIKELLREQVRPMVQRDGGDVKLLNFNEETGVVSLAMLGACRTCPSSSNTL 185 Query: 169 KYGVANILNHFVPEVKDI 186 K G+ ++ HF+PEV ++ Sbjct: 186 KDGIERVMKHFLPEVTEV 203 >gi|294877892|ref|XP_002768179.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] gi|239870376|gb|EER00897.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] Length = 177 Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 86/154 (55%), Gaps = 8/154 (5%) Query: 39 SPLASRIFSIPGIASVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGL 97 SPLA+ +F I G+ V TV K + DWE L+P V ++M F I + + Sbjct: 11 SPLAASLFRIHGVDKVLLAARHATVTKSPETDWEMLQPNV-ELVMSQFFE---IPNVKPV 66 Query: 98 GDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMR 155 ++ G +D VV+ I E+L+ R++P V RDGGD+ F + G + + + Sbjct: 67 SPEAIEYTPEGQDQHNDE-VVKSIHEILEQRIKPFVERDGGDVEFVSFDADSGELEIRLV 125 Query: 156 GACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 G+CSGCP +S TLK+G+ ++ H++PEVK++ + Sbjct: 126 GSCSGCPKSSVTLKFGIQRMVCHYIPEVKNVTNI 159 >gi|256820781|ref|YP_003142060.1| nitrogen-fixing NifU domain-containing protein [Capnocytophaga ochracea DSM 7271] gi|256582364|gb|ACU93499.1| nitrogen-fixing NifU domain protein [Capnocytophaga ochracea DSM 7271] Length = 299 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 5/178 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFS-IPGIASVYFGYDFI 61 + TE TPNP+ +KF+ + LV I + + +E + +P+A +F+ P I V+F ++I Sbjct: 107 VYTETTPNPSVMKFVANKR-LVPTIIEYKHIEETDEAPMAKALFTQFPFIEEVFFDDNYI 165 Query: 62 TV-GKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +V KD +W + + I + G +I + + + + + V ++ Sbjct: 166 SVTKKDNKEWAMVTSNIREFIKNYLSEGHILISSSEIKRHQQATQERLLSMVTTDEVSKQ 225 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLS--MRGACSGCPSASETLKYGVANIL 176 I ++D V+PAVA DGG+I F Y ++ ++GACSGCPS++ TLK G+ IL Sbjct: 226 IIAIIDEFVKPAVASDGGNIQFISYNPETHYVEVILQGACSGCPSSTLTLKKGIEVIL 283 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 2/95 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + + T +P +K + LV+G+ + N EA+ SPLA +F +P + +VY +FI Sbjct: 6 LSVQPTSSPDIIK-LEANKALVKGSYEYKNIDEAKNSPLAKELFYLPFVKTVYISSNFIA 64 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGG 96 + + +W+ ++ V ++ + SG I+ G Sbjct: 65 LKRFPIIEWKDVQEEVAQQVLLYLQSGREIVSTEG 99 >gi|8118105|gb|AAF72894.1|AF228511_2 NU1 [Trypanosoma cruzi] Length = 261 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 97/198 (48%), Gaps = 17/198 (8%) Query: 1 MFIQTEDTPNPATLKF-IPGQVVLVEGAIHFSNAKE------AEISPLASRIFSIPG--I 51 M + TPNP L F IP +G I E A + PL++ IF G + Sbjct: 11 MQLHAAPTPNPLCLAFHIPSSTY--DGFIPNGQTCEVAHRGLAWVHPLSNGIFEQYGQEV 68 Query: 52 ASVYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDF 110 ASV+ +++ +W L + I + + + + + DD+ Sbjct: 69 ASVFIAPRHVSITVYPNVEWSKLEWSISSFIGHYLLFVNECVPAAKEYTLMEDDL---RI 125 Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETL 168 E DS V+Q IKE+L +VRP V RDGGD+ + + G+V L+M GAC CPS+S TL Sbjct: 126 HEEDSEVLQCIKELLREQVRPMVQRDGGDVKLLNFNEETGVVSLAMLGACRTCPSSSNTL 185 Query: 169 KYGVANILNHFVPEVKDI 186 K G+ ++ HF+PEV ++ Sbjct: 186 KDGIERVMKHFLPEVTEV 203 >gi|21430120|gb|AAM50738.1| GM32035p [Drosophila melanogaster] Length = 104 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 39/69 (56%), Positives = 50/69 (72%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+LD R+RP V DGGDIVF GY G+V L M+G+CS CPS+ TLK GV N+L ++ Sbjct: 3 IKELLDTRIRPTVQEDGGDIVFMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYI 62 Query: 181 PEVKDIRTV 189 PEV+ + V Sbjct: 63 PEVESVEQV 71 >gi|146103241|ref|XP_001469515.1| hypothetical protein [Leishmania infantum] gi|134073885|emb|CAM72624.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 299 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 97/196 (49%), Gaps = 13/196 (6%) Query: 1 MFIQTEDTPNPATLKF-IPG---QVVLVEG-AIHFSNAKEAEISPLASRIFSI--PGIAS 53 M + + TPNP F IP + + +G + ++ A + PL+ +F + S Sbjct: 50 MQLHAQRTPNPLCHSFTIPADSFESFVPQGQSCEVAHRGLAWVHPLSQGLFEQYPQELMS 109 Query: 54 VYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE 112 V+ +++ DW + + + + I + I + DD+ D Sbjct: 110 VFIAPRHVSISVYTNVDWSKIEWSISSFLGHYLIFTNACISPAKEYTLIEDDLELKD--- 166 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKY 170 SDS V+Q IKE+L +VRP V RDGGD+ + + GIV L+M GAC CPS+ TLK Sbjct: 167 SDSEVLQCIKELLREQVRPMVQRDGGDVKLLNFNEKTGIVSLAMLGACKTCPSSQNTLKD 226 Query: 171 GVANILNHFVPEVKDI 186 G+ ++ HF+PEV ++ Sbjct: 227 GIERVMKHFLPEVTEV 242 >gi|149196448|ref|ZP_01873503.1| putative nitrogen-fixing protein NifU [Lentisphaera araneosa HTCC2155] gi|149140709|gb|EDM29107.1| putative nitrogen-fixing protein NifU [Lentisphaera araneosa HTCC2155] Length = 189 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 97/185 (52%), Gaps = 15/185 (8%) Query: 5 TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVG 64 T+ TPNP +KFI V+ +G + +SNA++ + LA+ +FSI I V+F + ITV Sbjct: 7 TQPTPNPNAVKFILNLDVITKGRVSYSNAEDCHNNELAATLFSIACITQVHFFENVITVT 66 Query: 65 K--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIK 122 + D Y WE L V+ ++ + DP G + + + S V++I+ Sbjct: 67 QNGDMY-WEELEDAVIALLQDGIDKHDPEFQVGEDEEERRAKL---------SPEVRQIE 116 Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDG--IVFLSMRGACSGCPSASETLKYGVANILN-HF 179 ++LD VRP++ DGGD++ GY G I+ + GAC+ C S++ + + L F Sbjct: 117 DILDRTVRPSLQGDGGDLMVMGYDLGSKILKVMYEGACNSCASSTTGTLMAIKSTLQAEF 176 Query: 180 VPEVK 184 P+++ Sbjct: 177 DPDIE 181 >gi|315023968|gb|EFT36970.1| nifU related protein [Riemerella anatipestifer RA-YM] gi|325335671|gb|ADZ11945.1| Thioredoxin-like protein [Riemerella anatipestifer RA-GD] Length = 292 Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 96/193 (49%), Gaps = 24/193 (12%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIAS-VYFGYDFI 61 I E TPNP+ +KF+ +++L +G + + +EA PLA IF A V+ +F+ Sbjct: 103 IYAEMTPNPSVMKFVASRLLL-DGFVEVKSREEAAEVPLAQAIFKEFSFAQEVFISDNFV 161 Query: 62 TVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMK--------LDDMGSGDFIE 112 V KD W + I E+ + NGG K ++ + + ++ Sbjct: 162 AVTKDDSVQWHEVMVVTRAFIAEY-------LQNGGEVSQKEPQKHENPVEKIINREYTY 214 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSM--RGACSGCPSASETLKY 170 ++ Q+I +VL+ V PAV DGG I Y + M +GACSGCPS++ TLK Sbjct: 215 TE----QKISDVLNEYVAPAVENDGGKISLMEYDESTKTAKMLLQGACSGCPSSTATLKG 270 Query: 171 GVANILNHFVPEV 183 G+ N+L F+P++ Sbjct: 271 GIENVLKQFLPDL 283 Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 2/84 (2%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E T NP +KF+ L+ G++ + PLA +F+ P + ++ +FI V K Sbjct: 7 EATENPRVMKFV-ADYNLIPGSLELDRNSDISEIPLAQELFNYPFVDKIFITANFIAVAK 65 Query: 66 -DQYDWEHLRPPVLGMIMEHFISG 88 D +WEH+ + +I + ++ Sbjct: 66 QDTVEWEHVVQSLKNVIEDELLAN 89 >gi|159163237|pdb|1VEH|A Chain A, Solution Structure Of Rsgi Ruh-018, A Nifu-Like Domain Of Hirip5 Protein From Mouse Cdna Length = 92 Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 36/73 (49%), Positives = 54/73 (73%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 VV IKE+LD R+RP V DGGD++++G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 14 VVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNML 73 Query: 177 NHFVPEVKDIRTV 189 ++PEV+ + V Sbjct: 74 QFYIPEVEGVEQV 86 >gi|256089666|ref|XP_002580899.1| iron-sulfur cluster scaffold protein nfu-related [Schistosoma mansoni] gi|238666574|emb|CAZ37138.1| iron-sulfur cluster scaffold protein nfu-related [Schistosoma mansoni] Length = 153 Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 40/101 (39%), Positives = 63/101 (62%), Gaps = 1/101 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +FIQ ++TPNP +LK+ PG+ VL G F + ++ SPLA ++F I G+ V+FG DF Sbjct: 44 LFIQVQETPNPNSLKYFPGKPVLGSGTRDFPSCTQSTSSPLARQLFRIEGVERVFFGPDF 103 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDM 100 IT+ K D ++W ++P V IM+ + SG P++ D+ Sbjct: 104 ITITKNDDFEWAVIKPDVYATIMDFYSSGQPVVSEEKAQDL 144 >gi|297830796|ref|XP_002883280.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297329120|gb|EFH59539.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 96 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 43/76 (56%), Positives = 54/76 (71%), Gaps = 2/76 (2%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYG 171 DS V IKE+L+ R+RPAV DGGDI + G+ GIV L M+GACSGCPS+S TLK G Sbjct: 2 DSETVAMIKELLETRIRPAVQDDGGDIEYCGFDPESGIVKLRMQGACSGCPSSSVTLKSG 61 Query: 172 VANILNHFVPEVKDIR 187 + N+L H+V EVK + Sbjct: 62 IENMLMHYVSEVKGVE 77 >gi|126668356|ref|ZP_01739314.1| hypothetical protein MELB17_13022 [Marinobacter sp. ELB17] gi|126627172|gb|EAZ97811.1| hypothetical protein MELB17_13022 [Marinobacter sp. ELB17] Length = 211 Score = 87.4 bits (215), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 9/178 (5%) Query: 10 NPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKD-QY 68 +P T KFI + + G F N + A SPL ++F++PG+A++ +TV K+ Sbjct: 21 DPDTCKFIVSRTLHPGGPFFFGNKERAVGSPLGEQLFALPGVANLLIADSVVTVCKEPAA 80 Query: 69 DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNR 128 W L+ + I SG P I +M + G ++D+ + ++E+LD Sbjct: 81 SWSGLKAGIGMAIRTQLRSGVPAIL-----EMPAHNRRQG---KTDAELTTAVQELLDKE 132 Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 V ++A GG I G R G + ++M G C GC S+ TL+ G +L PE+++I Sbjct: 133 VNRSIANHGGKISIVGVRQGKLSITMSGGCQGCASSQVTLRQGFEVMLKRVAPEIEEI 190 >gi|322503448|emb|CBZ38533.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 299 Score = 87.4 bits (215), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 97/196 (49%), Gaps = 13/196 (6%) Query: 1 MFIQTEDTPNPATLKF-IPG---QVVLVEG-AIHFSNAKEAEISPLASRIFSI--PGIAS 53 M + + TPNP F IP + + +G + ++ A + PL+ +F + S Sbjct: 50 MQLHAQRTPNPLCHSFTIPADSFESFVPQGQSCEVAHRGLAWVHPLSQGLFEQYPQELMS 109 Query: 54 VYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE 112 V+ +++ DW + + + + I + I + DD+ D Sbjct: 110 VFIAPRHVSISVYTNVDWSKIEWSISSFLGHYLIFTNACISPAKEYTLIEDDLELKD--- 166 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKY 170 +DS V+Q IKE+L +VRP V RDGGD+ + + GIV L+M GAC CPS+ TLK Sbjct: 167 TDSEVLQCIKELLREQVRPMVQRDGGDVKLLNFNEKTGIVSLAMLGACKTCPSSQNTLKD 226 Query: 171 GVANILNHFVPEVKDI 186 G+ ++ HF+PEV ++ Sbjct: 227 GIERVMKHFLPEVTEV 242 >gi|261332565|emb|CBH15560.1| HIRA-interacting protein 5, putative [Trypanosoma brucei gambiense DAL972] Length = 261 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 97/197 (49%), Gaps = 15/197 (7%) Query: 1 MFIQTEDTPNPATLKF-IPGQV---VLVEG-AIHFSNAKEAEISPLASRIFSI--PGIAS 53 M + + TPNP+ F IP + +G ++ A + PL+ IF +AS Sbjct: 11 MQLHSLPTPNPSCYTFHIPSSTYDNFIPDGQTCDVAHMSLAWVHPLSQGIFEQYPQEVAS 70 Query: 54 VYFG--YDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI 111 V+ + ITV DW L + I + + + + DD+ Sbjct: 71 VFIAPRHTSITV-HPHVDWNKLEWSISSFIGHYLVFTNACFPAAAEYALLEDDLV---IH 126 Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLK 169 E DS V+Q IKE++ +VRP V RDGGD+ + + G+V L+M GAC CPS+ TLK Sbjct: 127 EDDSEVLQCIKELVRGQVRPMVQRDGGDVKLLNFNEKTGVVSLAMLGACRTCPSSQNTLK 186 Query: 170 YGVANILNHFVPEVKDI 186 GV +L HF+PEVK++ Sbjct: 187 DGVERLLKHFLPEVKEV 203 >gi|71747438|ref|XP_822774.1| HIRA-interacting protein 5 [Trypanosoma brucei TREU927] gi|70832442|gb|EAN77946.1| HIRA-interacting protein 5, putative [Trypanosoma brucei] Length = 261 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 97/197 (49%), Gaps = 15/197 (7%) Query: 1 MFIQTEDTPNPATLKF-IPGQV---VLVEG-AIHFSNAKEAEISPLASRIFSI--PGIAS 53 M + + TPNP+ F IP + +G ++ A + PL+ IF +AS Sbjct: 11 MQLHSLPTPNPSCYTFHIPSSTYDNFIPDGQTCDVAHMGLAWVHPLSQGIFEQYPQEVAS 70 Query: 54 VYFG--YDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI 111 V+ + ITV DW L + I + + + + DD+ Sbjct: 71 VFIAPRHTSITV-HPHVDWNKLEWSISSFIGHYLVFTNACFPAAAEYALLEDDLV---IH 126 Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLK 169 E DS V+Q IKE++ +VRP V RDGGD+ + + G+V L+M GAC CPS+ TLK Sbjct: 127 EDDSEVLQCIKELVREQVRPMVQRDGGDVKLLNFNEKTGVVSLAMLGACRTCPSSQNTLK 186 Query: 170 YGVANILNHFVPEVKDI 186 GV +L HF+PEVK++ Sbjct: 187 DGVERLLKHFLPEVKEV 203 >gi|157876630|ref|XP_001686660.1| hypothetical protein [Leishmania major strain Friedlin] gi|68129735|emb|CAJ09041.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 311 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 94/189 (49%), Gaps = 13/189 (6%) Query: 8 TPNPATLKF-IPG---QVVLVEG-AIHFSNAKEAEISPLASRIFSI--PGIASVYFGYDF 60 TPNP F IP + + +G + ++ A + PL+ +F + SV+ Sbjct: 69 TPNPLCHTFTIPADSFESFVPQGQSCEVAHRGLAWVHPLSQGLFEQYPQELMSVFIAPRH 128 Query: 61 ITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +++ DW + + + + I + I + DD+ D +D+ V+Q Sbjct: 129 VSISVYTNVDWSKIEWSISSFLGHYLIFTNACISPAKEYTLMEDDLELKD---TDTEVLQ 185 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L +VRP V RDGGD+ + + GIV L+M GAC CPS+ TLK G+ ++ Sbjct: 186 CIKELLREQVRPMVQRDGGDVKLLNFNEKTGIVSLAMLGACKTCPSSQNTLKDGIERVMK 245 Query: 178 HFVPEVKDI 186 HFVPEV ++ Sbjct: 246 HFVPEVTEV 254 >gi|323308188|gb|EGA61437.1| Nfu1p [Saccharomyces cerevisiae FostersO] Length = 109 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 58/84 (69%), Gaps = 2/84 (2%) Query: 105 MGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCP 162 M + E D V + I+E++D R+RPA+ DGGDI ++G+ + G V+L ++GAC+ C Sbjct: 1 MPKFELTEEDEEVSELIEELIDTRIRPAILEDGGDIDYRGWDPKTGTVYLRLQGACTSCS 60 Query: 163 SASETLKYGVANILNHFVPEVKDI 186 S+ TLKYG+ ++L H+V EVK++ Sbjct: 61 SSEVTLKYGIESMLKHYVDEVKEV 84 >gi|322490669|emb|CBZ25931.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 301 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 97/196 (49%), Gaps = 13/196 (6%) Query: 1 MFIQTEDTPNPATLKF-IPG---QVVLVEG-AIHFSNAKEAEISPLASRIFS--IPGIAS 53 M + + TPNP F IP + + +G + ++ A + PL+ +F + S Sbjct: 52 MQLHAQPTPNPLCHSFTIPADSFESFVPQGQSCEVAHRGLAWVHPLSQGLFEQYSQEVMS 111 Query: 54 VYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE 112 V+ +++ +W + + + + I + I + DD+ D Sbjct: 112 VFIAPRHVSISVYTNVEWSKIEWSISSFLGHYLIFNNTCISPAKEYTLIEDDLELKD--- 168 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKY 170 +DS V+Q IKE+L +VRP V RDGGD+ + + G+V L+M GAC CPS+ TLK Sbjct: 169 TDSEVLQCIKELLREQVRPMVQRDGGDVKLLNFNEKTGVVSLAMLGACKTCPSSQNTLKD 228 Query: 171 GVANILNHFVPEVKDI 186 G+ ++ HF+PEV ++ Sbjct: 229 GIERVMKHFLPEVTEV 244 >gi|228472622|ref|ZP_04057382.1| nitrogen-fixing NifU domain protein [Capnocytophaga gingivalis ATCC 33624] gi|228276035|gb|EEK14791.1| nitrogen-fixing NifU domain protein [Capnocytophaga gingivalis ATCC 33624] Length = 299 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 91/186 (48%), Gaps = 22/186 (11%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E TPNP +KF+ + LV F +EAE SPLA +F + SV+F ++++ Sbjct: 111 IYVESTPNPMAMKFVANKK-LVSRPYEFKTIEEAENSPLAQALFGFDFVKSVFFDANYVS 169 Query: 63 VGK--DQYDWEHLRPPVLGMIMEHFISGDPII------HNGGLGDMKLDDMGSGDFIESD 114 + + WE + + ++ + G ++ + G +L D+ S Sbjct: 170 ITRLPRSTPWEEVMMETREFLRQYLMEGKTVVKVAVSEEDRPKGLPRLGDIYS------- 222 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETLKYGV 172 ++I +LD +RPAV+ DGG+I F Y V + ++GAC+GCPS+ TLK G+ Sbjct: 223 ----KKIVALLDQYIRPAVSSDGGNIEFVSYDKETHKVKVVLQGACNGCPSSRITLKQGI 278 Query: 173 ANILNH 178 +L Sbjct: 279 EGLLRE 284 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 2/97 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M +Q + T +P ++ + VVLV+G +S + SPLA + +P I +VYF +F Sbjct: 1 MKLQIKYTADPTIVQ-LEAPVVLVKGNYQYSKGDNTQDSPLAGELLRLPFIKTVYFSANF 59 Query: 61 ITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGG 96 I + WE + P ++G I G+ +++ G Sbjct: 60 IALQSTGNIRWEEVAPELVGQIETALSQGEALVYLPG 96 >gi|301166538|emb|CBW26114.1| putative nitrogen fixation-related protein [Bacteriovorax marinus SJ] Length = 184 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 11/185 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M IQ + TPNP LKFI + V EG + + + + LA +F++ G+ ++F + Sbjct: 1 MDIQIQPTPNPNALKFILDKPVKNEGNSSYKSPMDCGDNNLALTLFTVRGVDQLHFYDNV 60 Query: 61 ITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 IT+ K Y DWE + P ++ I + DP D + + S ++ Sbjct: 61 ITITKFGYEDWESMEPTIMDYINSEYPKHDP---------NYFDPDPEAERRANLSPELK 111 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE-TLKYGVANILNH 178 I+ +LD +RP + DGGDI + D I+ + +GAC CPS++ TL+ A + + Sbjct: 112 EIEAILDKTIRPGLQGDGGDIQTISFEDNILLVQYQGACGTCPSSTTGTLEAIKAILRDE 171 Query: 179 FVPEV 183 + P++ Sbjct: 172 YNPDI 176 >gi|154345572|ref|XP_001568723.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134066065|emb|CAM43852.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 260 Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 13/196 (6%) Query: 1 MFIQTEDTPNPATLKF-IPG---QVVLVEG-AIHFSNAKEAEISPLASRIFSI--PGIAS 53 M + + TPNP F IP + + +G + ++ A + PL+ +F + Sbjct: 11 MQLHAQPTPNPLCHSFSIPADSFESFVPQGQSCEVAHRGLAWVHPLSQGLFEQYPQEVMC 70 Query: 54 VYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE 112 V+ +++ DW + + + + I + + + DD+ D Sbjct: 71 VFIAPRHVSISVYTNVDWSKIEWSISSFLGHYLIFNNACVSPAKEYTLIEDDLELKD--- 127 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKY 170 +DS V+Q IKE+L +VRP V RDGGD+ + + G+V L+M GAC CPS+ TLK Sbjct: 128 NDSEVLQCIKELLREQVRPMVQRDGGDVKLLNFNEKTGVVSLAMLGACRTCPSSQNTLKD 187 Query: 171 GVANILNHFVPEVKDI 186 G+ ++ HF+PEV ++ Sbjct: 188 GIERVMKHFLPEVTEV 203 >gi|238568059|ref|XP_002386363.1| hypothetical protein MPER_15421 [Moniliophthora perniciosa FA553] gi|215438109|gb|EEB87293.1| hypothetical protein MPER_15421 [Moniliophthora perniciosa FA553] Length = 105 Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 42/95 (44%), Positives = 60/95 (63%), Gaps = 1/95 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPN +LKFIPG V+ EG F + + A SPLA R+ I G+ +V++G DF Sbjct: 1 MFIQTETTPNDDSLKFIPGIPVMGEGTAEFLDTRSALASPLAIRLMGIEGVKAVFYGPDF 60 Query: 61 ITVGKDQYD-WEHLRPPVLGMIMEHFISGDPIIHN 94 +T+ KD + W ++P V ++ME F SG + + Sbjct: 61 VTISKDSENPWAVIKPEVYSILMEFFSSGQKMFRS 95 >gi|237843489|ref|XP_002371042.1| NifU-like domain-containing protein [Toxoplasma gondii ME49] gi|211968706|gb|EEB03902.1| NifU-like domain-containing protein [Toxoplasma gondii ME49] gi|221484803|gb|EEE23097.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 235 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 11/155 (7%) Query: 46 FSIPGIASVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNG-GLGDMKLD 103 F I G +SV ++TV K + DW+ L PV I +H SG P + D+ Sbjct: 24 FQIDGTSSVLIAGGYVTVVKARDTDWKDLEEPVKRCIQDHLTSGIPAVQRAVSSEDVSGA 83 Query: 104 DMGSGDFIESDSA-------VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSM 154 G + E +A + + I+E+L R RP + DGGD+ + + GIV++ + Sbjct: 84 AEGRPEVPEKKNAKSEEEEDLSEAIRELLHMRARPMLQADGGDLEMMRFDEETGIVWVHL 143 Query: 155 RGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 +G+C GCPS+ T+K G+ +L +++PEV+ I V Sbjct: 144 KGSCEGCPSSLITVKRGMKQMLQYYIPEVRTILRV 178 >gi|221504979|gb|EEE30644.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 235 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 13/156 (8%) Query: 46 FSIPGIASVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNG--------- 95 F I G +SV ++TV K + DW+ L PV I +H SG P + Sbjct: 24 FQIDGTSSVLIAGGYVTVVKARDTDWKDLEEPVKRCIQDHLTSGIPAVQRAVSSEDVSGA 83 Query: 96 GLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLS 153 G ++ + + E + + + I+E+L R RP + DGGD+ + + GIV++ Sbjct: 84 AEGRPQVPEKKNAKS-EEEEDLSEAIRELLHMRARPMLQADGGDLEMMRFDEETGIVWVH 142 Query: 154 MRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 ++G+C GCPS+ T+K G+ +L +++PEV+ I V Sbjct: 143 LKGSCEGCPSSLITVKRGMKQMLQYYIPEVRTILRV 178 >gi|145544593|ref|XP_001457981.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124425800|emb|CAK90584.1| unnamed protein product [Paramecium tetraurelia] Length = 196 Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 95/190 (50%), Gaps = 16/190 (8%) Query: 1 MFIQTEDTPNPATLKFIP-GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 + IQ + PNP LKFIP G+ + + F+ + P+ G+ ++G D Sbjct: 10 LLIQVKQVPNPNFLKFIPIGKQS--KRCLMFTTC----LKPIQHN-----GVTREFYGMD 58 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +I++ K ++ W+ LR + I + + S L + + S + DS + Sbjct: 59 YISISKKNESKWDDLRSRIFEQIFDQYESNQEGSEKQFLFEGFKQNKDSV-IQDDDSKPI 117 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 Q IK++L++R+RP GGDIVF+ + + GI++L +G+C CP+ + TLK +L Sbjct: 118 QLIKDILNHRIRPDFQEIGGDIVFREFDELNGILYLYKKGSCVECPATATTLKNRFEKML 177 Query: 177 NHFVPEVKDI 186 V +VK + Sbjct: 178 CQNVDQVKQV 187 >gi|213407222|ref|XP_002174382.1| NifU-like protein c [Schizosaccharomyces japonicus yFS275] gi|212002429|gb|EEB08089.1| NifU-like protein c [Schizosaccharomyces japonicus yFS275] Length = 183 Score = 80.5 bits (197), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 33/78 (42%), Positives = 56/78 (71%), Gaps = 2/78 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETL 168 ++SDS V IKE++D+ +RP++ DGGD+ ++G+ + G V+L +RG+C C S+ TL Sbjct: 66 LDSDSETVAMIKELIDSSIRPSIQEDGGDLEYRGFDEQTGTVYLKLRGSCRTCASSEITL 125 Query: 169 KYGVANILNHFVPEVKDI 186 K G+ +L H++PEVK++ Sbjct: 126 KSGIQQMLMHYIPEVKNV 143 >gi|325982994|ref|YP_004295396.1| Scaffold protein Nfu/NifU [Nitrosomonas sp. AL212] gi|325532513|gb|ADZ27234.1| Scaffold protein Nfu/NifU [Nitrosomonas sp. AL212] Length = 186 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 6/180 (3%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TPN LKFI + + A F NA+ A PLAS +F I + +V++ +ITV + Sbjct: 8 EGTPNKNALKFILKEPLTWGVARSFDNAEAARDDPLASALFDIDHVTNVFYIDHWITVTQ 67 Query: 66 D-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEV 124 D + +W+ L + I + L ++ D + +++I + Sbjct: 68 DGEANWQDLARDIADPIRAAPAASAQSAETVATASQALANLNPEDQLR-----LEKINIL 122 Query: 125 LDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVK 184 LD VRP + DGGD+ G I+ + +GAC CPS+ G+ N+L P+++ Sbjct: 123 LDEEVRPYLQSDGGDLHILGLEGNILHIHYQGACGTCPSSISGTLRGIENMLRTLEPDIQ 182 >gi|149195565|ref|ZP_01872622.1| putative nitrogen-fixing protein NifU [Lentisphaera araneosa HTCC2155] gi|149141027|gb|EDM29423.1| putative nitrogen-fixing protein NifU [Lentisphaera araneosa HTCC2155] Length = 185 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 17/182 (9%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TPNP LK++ + +L +G FS A+EA LA F++ G+ S+++ ++IT+ K Sbjct: 8 ETTPNPNALKYVLNETILEDGICQFSAAEEA-TDDLARACFAVEGVVSIFYRDNYITITK 66 Query: 66 -DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEV 124 D DW + + D I + + K + +F E + V + I ++ Sbjct: 67 NDSADWFEIEMTI----------KDEINNRVEAIEFKAQAVPEINFGEKQTLVFE-IDDI 115 Query: 125 LDNRVRPAVARDGGDIVFKGYRDGIVFLSMR--GACSGCPSASETLKYGVANILN-HFVP 181 LD +RP +A DGG + D +V LS+R GAC CPS++ + NIL F P Sbjct: 116 LDETIRPGLAMDGGGVDIIDLSDEMV-LSVRYQGACGSCPSSTTGTLMAIENILQEQFDP 174 Query: 182 EV 183 + Sbjct: 175 RI 176 >gi|30249416|ref|NP_841486.1| nitrogen-fixing protein NifU [Nitrosomonas europaea ATCC 19718] gi|30138779|emb|CAD85356.1| Nitrogen-fixing protein NifU [Nitrosomonas europaea ATCC 19718] Length = 186 Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 6/182 (3%) Query: 4 QTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITV 63 + E TPNP LKF+ + + A + +A++A PLA+ +F I + +V++ +IT+ Sbjct: 6 EIEGTPNPNALKFVLKEPLTWGVAKSYDHAEQAVDDPLAAALFDIDHVTNVFYVDRWITI 65 Query: 64 GKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIK 122 +D DW+ L V I + D L D+ E D ++RI Sbjct: 66 TQDGGADWQDLAREVADPIRAAPAATDQSAAVVAAASRTLADLS-----EEDQQRLERIN 120 Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 +LD VRP + DGGD+ I+ + +GAC CPS+ G+ +L P+ Sbjct: 121 ILLDEEVRPFLQHDGGDLHVLALEGNILRIHYQGACGTCPSSISGTLRGIEQLLRTIEPD 180 Query: 183 VK 184 ++ Sbjct: 181 IR 182 >gi|313230548|emb|CBY18764.1| unnamed protein product [Oikopleura dioica] Length = 140 Score = 77.4 bits (189), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 46/118 (38%), Positives = 68/118 (57%), Gaps = 7/118 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA-IHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FI TE TPNP LKF+PG+ VL GA F + +EA SPLA RIF++ G+ +FG D Sbjct: 15 LFITTEVTPNPNALKFVPGRDVLGAGATCDFPDIREAYKSPLAKRIFAVDGVKGCFFGPD 74 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKL----DDMGSGDFI 111 F+T+ + + DW ++ + ++ + F S PII+ L + DD+ G FI Sbjct: 75 FVTIIRHDETDDWPVMKAELFAVLTDFFDSNLPIINEDALPNQDTIIYDDDVMLGFFI 132 >gi|313220326|emb|CBY31182.1| unnamed protein product [Oikopleura dioica] Length = 140 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/118 (38%), Positives = 68/118 (57%), Gaps = 7/118 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA-IHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FI TE TPNP LKF+PG+ VL GA F + +EA SPLA RIF++ G+ +FG D Sbjct: 15 LFITTEVTPNPNALKFVPGRDVLGAGATCDFPDIREAYKSPLAKRIFAVDGVKGCFFGPD 74 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKL----DDMGSGDFI 111 F+T+ + + DW ++ + ++ + F S PII+ L + DD+ G FI Sbjct: 75 FVTIIRHDETDDWPVMKAELFAVLTDFFDSNLPIINEDALPNQDTIIYDDDVMLGFFI 132 >gi|313230549|emb|CBY18765.1| unnamed protein product [Oikopleura dioica] Length = 146 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 35/80 (43%), Positives = 54/80 (67%), Gaps = 2/80 (2%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLK 169 +S + VV IKE+LD R+RP V DGGDI F + G++ LS+ GAC+ CPS+ TLK Sbjct: 44 KSANEVVAMIKELLDTRIRPTVMEDGGDIAFVSFDPDTGVLQLSLIGACATCPSSVVTLK 103 Query: 170 YGVANILNHFVPEVKDIRTV 189 +GV N++ ++PE+ ++ + Sbjct: 104 HGVENMMKFYIPEITEVEQI 123 >gi|313220324|emb|CBY31180.1| unnamed protein product [Oikopleura dioica] Length = 95 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 49/71 (69%), Gaps = 2/71 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDI F + G++ LS+ GAC+ CPS+ TLK+GV N++ Sbjct: 2 IKELLDTRIRPTVMEDGGDIAFVSFDPDTGVLQLSLIGACATCPSSVVTLKHGVENMMKF 61 Query: 179 FVPEVKDIRTV 189 ++PE+ ++ + Sbjct: 62 YIPEITEVEQI 72 >gi|294877894|ref|XP_002768180.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] gi|239870377|gb|EER00898.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] Length = 251 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 92/172 (53%), Gaps = 14/172 (8%) Query: 22 VLVEGA--IHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK-DQYDWEHLRPPVL 78 +L GA + F + + + SPLA +F I G+ V + + V K DW ++P V Sbjct: 70 ILPSGAKGMTFDSKEGSSQSPLALSLFKIEGVERVVLTHHNVAVSKVSSIDWCFVKPKVE 129 Query: 79 GMIMEHF-ISGDPIIHNGGLG-DMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARD 136 ++ F + G ++ L + ++++ +E RI EVLD+R+RP + D Sbjct: 130 SVLSNFFAVPGLQSVYRSALQFETEVEEAEKAKLME-------RIAEVLDDRIRPVLQDD 182 Query: 137 GGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 GGD+ + + G++ + ++GAC+GCP +S TL++ + N+L VPEVK + Sbjct: 183 GGDVDVADFDEETGVLSVRLKGACAGCPMSSVTLRFRIENMLVQSVPEVKKV 234 >gi|294941309|ref|XP_002783074.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] gi|239895342|gb|EER14870.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] Length = 165 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 52/72 (72%), Gaps = 2/72 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVAN 174 VV+ I E+L+ R++P V RDGGD+ F + G++ + + G+C+GCP +S TLK+G+ Sbjct: 41 VVKSIHEILEQRIKPFVERDGGDVEFIAFDSDTGVLQIRLVGSCAGCPKSSVTLKFGIQR 100 Query: 175 ILNHFVPEVKDI 186 ++ H++PEVK++ Sbjct: 101 MVCHYIPEVKNV 112 >gi|149036648|gb|EDL91266.1| histone cell cycle regulation defective interacting protein 5 (predicted), isoform CRA_b [Rattus norvegicus] Length = 79 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 44/60 (73%) Query: 130 RPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 RP V DGGD++++G+ DGIV L ++G+C+ CPS+ TLK G+ N+L ++PEV+ + V Sbjct: 6 RPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQV 65 >gi|169350337|ref|ZP_02867275.1| hypothetical protein CLOSPI_01098 [Clostridium spiroforme DSM 1552] gi|169293120|gb|EDS75253.1| hypothetical protein CLOSPI_01098 [Clostridium spiroforme DSM 1552] Length = 83 Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 51/77 (66%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + + ++ I++V+ N++RP + RDGGDI ++DGIV++ M GAC+GC ETLK GV Sbjct: 2 ENMSTIEEIEKVI-NKLRPYLNRDGGDIELVDFKDGIVYVKMLGACAGCAMLDETLKDGV 60 Query: 173 ANILNHFVPEVKDIRTV 189 IL VP V +++ V Sbjct: 61 EQILMEEVPGVLEVKNV 77 >gi|320526969|ref|ZP_08028158.1| NifU-like domain protein [Solobacterium moorei F0204] gi|320132554|gb|EFW25095.1| NifU-like domain protein [Solobacterium moorei F0204] Length = 109 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++QRI+ LD ++RP + DGGD+ GY DG+V ++M GAC+GC TL G+ IL Sbjct: 26 LLQRIQHTLD-KIRPYIQADGGDVFLVGYADGVVTVTMTGACNGCMVMDSTLNDGIKAIL 84 Query: 177 NHFVPEVKDIR 187 VPEV D+R Sbjct: 85 LDEVPEVHDVR 95 >gi|70940575|ref|XP_740685.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56518569|emb|CAH83895.1| hypothetical protein PC401665.00.0 [Plasmodium chabaudi chabaudi] Length = 191 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 2/80 (2%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLK 169 E ++ IK +++ RVRP V DGGDI F + GIV++ ++GAC GC + TL+ Sbjct: 105 EEIMEIISSIKLLIEKRVRPIVVNDGGDIKFVCFDMDSGIVYVQLQGACVGCSQSEVTLQ 164 Query: 170 YGVANILNHFVPEVKDIRTV 189 Y + N+L +++ E+K+I+ + Sbjct: 165 YMIKNMLTYYISEIKEIKNI 184 >gi|238604262|ref|XP_002396156.1| hypothetical protein MPER_03666 [Moniliophthora perniciosa FA553] gi|215468178|gb|EEB97086.1| hypothetical protein MPER_03666 [Moniliophthora perniciosa FA553] Length = 115 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 3/69 (4%) Query: 124 VLDNRVRPAVARDGGDIVFKGYRD---GIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 ++ RVRPA+ DGGDI ++G+ + G+V + ++G+C GC S++ TLK G+ +L H++ Sbjct: 21 AVETRVRPAIQEDGGDIEYRGFDEDGSGLVKIKLKGSCRGCDSSTVTLKSGIERMLMHYI 80 Query: 181 PEVKDIRTV 189 PEVK + V Sbjct: 81 PEVKGVEQV 89 >gi|156081764|ref|XP_001608375.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148800946|gb|EDL42351.1| hypothetical protein, conserved [Plasmodium vivax] Length = 191 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 2/75 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVAN 174 ++ IK +++ RVRP + DGGDI F + DGIV++ + GAC C + TL+Y + N Sbjct: 110 IISSIKLLIEKRVRPVIVNDGGDIKFICFDIDDGIVYVQLEGACVTCSQSEITLQYMIKN 169 Query: 175 ILNHFVPEVKDIRTV 189 +L +++ E+K+I+ V Sbjct: 170 MLTYYISEIKEIKNV 184 >gi|312213452|emb|CBX93534.1| hypothetical protein [Leptosphaeria maculans] Length = 186 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/100 (42%), Positives = 51/100 (51%), Gaps = 9/100 (9%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG--------AIHFSNAKEAEISPLASRIFSIPGIA 52 MFIQTE TPN LKF P VL E S SPLA+ + +I G+ Sbjct: 71 MFIQTEPTPNDDALKFNPNARVLSESISSPYLEYLTPRSTLAPPHPSPLAAALMNIDGVT 130 Query: 53 SVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPI 91 SV+FG D+ITV KD W H++P V +I E SG I Sbjct: 131 SVFFGTDYITVTKDSGTPWAHIKPEVFALITEFMTSGQAI 170 >gi|221054900|ref|XP_002258589.1| NifU-like protein [Plasmodium knowlesi strain H] gi|193808658|emb|CAQ39361.1| NifU-like protein, putative [Plasmodium knowlesi strain H] Length = 191 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 2/75 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVAN 174 ++ IK +++ RVRP + DGGDI F + DGIV++ + GAC C + TL+Y + N Sbjct: 110 IISSIKLLIEKRVRPVIVNDGGDIKFICFDVDDGIVYVQLEGACVTCSQSEITLQYMIKN 169 Query: 175 ILNHFVPEVKDIRTV 189 +L +++ E+K+I+ V Sbjct: 170 MLTYYISEIKEIKNV 184 >gi|89900651|ref|YP_523122.1| nitrogen-fixing NifU-like protein [Rhodoferax ferrireducens T118] gi|89345388|gb|ABD69591.1| nitrogen-fixing NifU-like [Rhodoferax ferrireducens T118] Length = 186 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 6/184 (3%) Query: 4 QTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITV 63 + EDTPNP KF+ + + A + NA++A+ LAS +F+I + +V++ ++TV Sbjct: 6 EIEDTPNPNARKFVLREPLTWGIAHSYENAEQAQGDALASALFAIDHVTNVFYIDRWLTV 65 Query: 64 GKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIK 122 +D Q +W+ L + + P + D D + I+ Sbjct: 66 TQDGQANWDALVREIAVPL-----RAAPAASEQSAAAVFEARAHVADLSAQDRQRLDDIE 120 Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 +LD +RP + DGGD+ G + + +GAC CPSA G+ + L P+ Sbjct: 121 LILDQEIRPYLQSDGGDLHILGLAGNQLIVHYQGACGTCPSAISGTLQGIESRLRTLEPD 180 Query: 183 VKDI 186 ++ I Sbjct: 181 IEVI 184 >gi|82701834|ref|YP_411400.1| nitrogen-fixing NifU-like [Nitrosospira multiformis ATCC 25196] gi|82409899|gb|ABB74008.1| Nitrogen-fixing NifU-like protein [Nitrosospira multiformis ATCC 25196] Length = 186 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 6/184 (3%) Query: 2 FIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 ++ E TPN LKFI + + + NA++A+ PLA +F I + +V++ +I Sbjct: 4 IVEIEGTPNRNALKFILKEPLTWGVTRSYDNAEQAKGDPLAEALFDIDHVTNVFYVDRWI 63 Query: 62 TVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 TV +D DW+ L V I + ++ ++ D + Sbjct: 64 TVTQDGAADWQDLAREVADPIRAAPAADAQTAATIAAAGAEIANLSP-----EDQQRLNL 118 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I E+LD +RP + DGGD+ G + + +GAC CPS+ G+ N+L Sbjct: 119 INEMLDEEIRPYLQSDGGDLHVLGLEGNRLSVHYQGACGTCPSSITGTLRGIQNMLRSIE 178 Query: 181 PEVK 184 P+++ Sbjct: 179 PDLE 182 >gi|302342797|ref|YP_003807326.1| nitrogen-fixing NifU domain protein [Desulfarculus baarsii DSM 2075] gi|301639410|gb|ADK84732.1| nitrogen-fixing NifU domain protein [Desulfarculus baarsii DSM 2075] Length = 73 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILN 177 QR++E LD ++RPA+ +DGGD+ D G+V + ++GAC GCP + TLK G+ +L Sbjct: 3 QRVQEALD-KIRPALQKDGGDVKLVDVSDDGVVKVQLQGACHGCPMSQMTLKMGIEKVLK 61 Query: 178 HFVPEVKDIRTV 189 VPEV+ + +V Sbjct: 62 QNVPEVQKVESV 73 >gi|167756739|ref|ZP_02428866.1| hypothetical protein CLORAM_02286 [Clostridium ramosum DSM 1402] gi|167702914|gb|EDS17493.1| hypothetical protein CLORAM_02286 [Clostridium ramosum DSM 1402] Length = 83 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 51/77 (66%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +++ ++ +++V+ N++RP + RDGGDI ++DGIV++ M GAC+GC ETLK GV Sbjct: 2 ENTSTIEEVEKVI-NKLRPYLNRDGGDIELIDFKDGIVYVKMLGACAGCSMLDETLKDGV 60 Query: 173 ANILNHFVPEVKDIRTV 189 IL VP V ++ + Sbjct: 61 EQILMEEVPGVLGVQNI 77 >gi|120434576|ref|YP_860269.1| hypothetical protein GFO_0207 [Gramella forsetii KT0803] gi|117576726|emb|CAL65195.1| conserved hypothetical protein [Gramella forsetii KT0803] Length = 257 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 5/144 (3%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNPA +KF+ + LV A+ F N +A+ +PL ++F P + ++ ++++ Sbjct: 110 VYAESTPNPAVMKFVANKK-LVLKAVEFKNIDDAKNAPLVQKLFHFPFVKEIFIDENYVS 168 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGL---GDMKLDDMGSGDFIESDSAVV 118 + K D WE + + I + G+ +++ + D + E+ Sbjct: 169 IQKYDMAGWEEITMELREFIRNYIEEGNEVLNVESVQVAADSSSEKGTKTPEFENLDDTS 228 Query: 119 QRIKEVLDNRVRPAVARDGGDIVF 142 Q+I +LD ++PAVA DGG+I+F Sbjct: 229 QQIIAILDEYIKPAVASDGGNILF 252 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 1/87 (1%) Query: 8 TPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK-D 66 T P+ KF + + + F N EA SP+A ++F +P + +VY +FI + K D Sbjct: 11 TTTPSIAKFEADKFLTRHESFEFKNIDEASRSPIAQQLFYLPFVKTVYIAQNFIAIEKYD 70 Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIH 93 +WE + V I + G +I Sbjct: 71 IVEWEDVEKEVAEQIETYLNKGGEVIK 97 >gi|71416241|ref|XP_810158.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70874651|gb|EAN88307.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 452 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 5/118 (4%) Query: 70 WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRV 129 W L+ V ++ +H SG P + + D + E DS VV +KE++ + Sbjct: 301 WSELKLHVSALLTDHLFSGRPHV-DPDAPHPHPDTLPQ----EGDSEVVLILKELISTTI 355 Query: 130 RPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 RP + DGGDI F G++++ M GAC C S+ TL + H+VPEV ++R Sbjct: 356 RPQLQLDGGDIRFVSLEGGVMYVEMLGACRRCKSSKTTLSDLIERTTRHWVPEVHEVR 413 >gi|91200475|emb|CAJ73523.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 72 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I+E L +RPA+ DGGDI Y DGIV + ++GAC CPS+ TLKYGV L Sbjct: 3 EKIEEALKG-IRPALQADGGDIELVDYEDGIVKVRLKGACGSCPSSLATLKYGVEARLKE 61 Query: 179 FVPEVKDI 186 +PE++ + Sbjct: 62 IIPEIESV 69 >gi|322820651|gb|EFZ27204.1| HIRA-interacting protein 5, putative [Trypanosoma cruzi] Length = 452 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 5/118 (4%) Query: 70 WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRV 129 W L+ V ++ +H SG P + + D + E DS VV +KE++ + Sbjct: 300 WSELKLHVSALLTDHLFSGRPHV-DPDAPHPHPDTLPQ----EGDSEVVLILKELISTTI 354 Query: 130 RPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 RP + DGGDI F G++++ M GAC C S+ TL + H+VPEV ++R Sbjct: 355 RPQLQLDGGDIRFVSLEGGVMYVEMLGACRRCKSSKTTLSDLIERTTRHWVPEVHEVR 412 >gi|312880024|ref|ZP_07739824.1| nitrogen-fixing NifU domain protein [Aminomonas paucivorans DSM 12260] gi|310783315|gb|EFQ23713.1| nitrogen-fixing NifU domain protein [Aminomonas paucivorans DSM 12260] Length = 76 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 2/71 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 QR+ +V+ ++RP + GGDI FKG+ + G V +++ GAC GCP A ETL+ V +L Sbjct: 3 QRVLQVIQEQIRPNLQAHGGDIEFKGFDEVEGAVTVALTGACGGCPFAQETLRVQVEQVL 62 Query: 177 NHFVPEVKDIR 187 +PEVK +R Sbjct: 63 RAAIPEVKSVR 73 >gi|71665794|ref|XP_819863.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70885183|gb|EAN98012.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 426 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 5/118 (4%) Query: 70 WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRV 129 W L+ V ++ +H SG P + + D + E DS VV +KE++ + Sbjct: 274 WSELKLHVSALLTDHLFSGRPHV-DPDAPHPHPDTLPQ----EGDSEVVLILKELISTTI 328 Query: 130 RPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 RP + DGGDI F G++++ M GAC C S+ TL + H+VPEV ++R Sbjct: 329 RPQLQLDGGDIRFVSLEGGVMYVEMLGACRRCKSSKTTLSDLIERTTRHWVPEVHEVR 386 >gi|254439456|ref|ZP_05052950.1| NifU-like domain protein [Octadecabacter antarcticus 307] gi|198254902|gb|EDY79216.1| NifU-like domain protein [Octadecabacter antarcticus 307] Length = 414 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 14/178 (7%) Query: 10 NPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKD-QY 68 +P TL+FI V ++ + +A + +PLA +F+I G+ V I V + Sbjct: 18 DPQTLRFILDAPVQDSTSVCYDDA--SADAPLARALFAISGVQRVEVDGASIYVSRSADV 75 Query: 69 DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNR 128 DW L+ P+ I + ++ L + + G+ D+ + + ++LD+ Sbjct: 76 DWSALKAPIAAAIRD-------VLEREALPLGQRSEAPKGE----DALLFLAVADLLDSE 124 Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 PA+A GG + + + V+L M G C GC ++S TL+ G+ +L +P + +I Sbjct: 125 ANPAIASHGGSVAVERVENSDVYLRMSGGCQGCAASSATLRQGIETMLRAGLPAIGEI 182 >gi|296005287|ref|XP_002808974.1| NifU-like protein, putative [Plasmodium falciparum 3D7] gi|225631861|emb|CAX64255.1| NifU-like protein, putative [Plasmodium falciparum 3D7] Length = 192 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 48/75 (64%), Gaps = 2/75 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVAN 174 ++ IK +++ RVRP + DGGDI F + GIV++ + GAC C + TL+Y + N Sbjct: 111 IISSIKLLIEKRVRPIILNDGGDIKFICFDVDKGIVYVQLEGACVTCAQSEVTLQYMIKN 170 Query: 175 ILNHFVPEVKDIRTV 189 +L +++ E+K+I+ V Sbjct: 171 MLTYYISEIKEIKNV 185 >gi|118340603|gb|ABK80653.1| uncharacterized protein [uncultured marine Nitrospinaceae bacterium] Length = 253 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 14/189 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 + I+ + +P F + ++ + +F++ + AE S LA R+FS + +V Sbjct: 61 VLIKAQPSPTGDQCLFTVNRSLMTGHSWYFADFESAEGSSLAERLFSQEDVETVLVCECT 120 Query: 61 ITVG---KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 +T+ K +DW L V I E G+ +I + D+ ++ V Sbjct: 121 VTITRKDKTLFDWGPLAKDVGTAIREAIQDGEGLIAEKIIADLP-----------TEEEV 169 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + I++V+D V P VA GG+I R V + M G C GC +A TLK G+ Sbjct: 170 REGIQKVIDVEVNPGVAGHGGNISLLDVRGNSVTIQMGGGCQGCSAADLTLKQGIHTSFR 229 Query: 178 HFVPEVKDI 186 VP+V I Sbjct: 230 TAVPKVGAI 238 >gi|313683413|ref|YP_004061151.1| nitrogen-fixing nifu domain protein [Sulfuricurvum kujiense DSM 16994] gi|313156273|gb|ADR34951.1| nitrogen-fixing NifU domain protein [Sulfuricurvum kujiense DSM 16994] Length = 91 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 45/64 (70%), Gaps = 1/64 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD ++Q ++ V+D ++RP +A DGGDI F G ++G +++ ++GAC GC S+ TLKYGV Sbjct: 5 SDEELMQPVRNVID-KIRPTLALDGGDIAFLGVKNGTIYVQLQGACIGCSSSGNTLKYGV 63 Query: 173 ANIL 176 L Sbjct: 64 ERQL 67 >gi|260892780|ref|YP_003238877.1| nitrogen-fixing NifU domain protein [Ammonifex degensii KC4] gi|260864921|gb|ACX52027.1| nitrogen-fixing NifU domain protein [Ammonifex degensii KC4] Length = 72 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 40/62 (64%) Query: 128 RVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 ++RP + RDGGD+ DG+V + ++GAC GCP A TLK G+ IL VPEVK++ Sbjct: 11 QIRPHLQRDGGDVELVAVEDGVVKVRLKGACGGCPMAMVTLKQGIERILKEAVPEVKEVV 70 Query: 188 TV 189 V Sbjct: 71 AV 72 >gi|15615981|ref|NP_244286.1| nitrogen fixation protein (NifU protein) [Bacillus halodurans C-125] gi|10176042|dbj|BAB07138.1| nitrogen fixation protein (NifU protein) [Bacillus halodurans C-125] Length = 79 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 1/79 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 +E+ + + +++KEVLD ++RP + RDGGD+ DGIV + + GAC CPS++ TLK Sbjct: 1 METSTEMHEQVKEVLD-KLRPFLLRDGGDVELVDVEDGIVKVRLLGACGSCPSSTITLKA 59 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ L VP VK+I V Sbjct: 60 GIERALLEEVPGVKEIEQV 78 >gi|237653650|ref|YP_002889964.1| nitrogen-fixing NifU domain protein [Thauera sp. MZ1T] gi|237624897|gb|ACR01587.1| nitrogen-fixing NifU domain protein [Thauera sp. MZ1T] Length = 202 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 10/183 (5%) Query: 8 TPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKDQ 67 TPNP KF+ + HFS L + ++PG+ +Y FIT+ +D Sbjct: 10 TPNPLANKFMLDAPLYTGAPRHFSAGVAVVGDTLGESLLAVPGVVDIYCTGGFITITRDP 69 Query: 68 -YDWEHLRPPVLGMIMEHF------ISGDPIIHNGGLGDMKLDDMGSGDFIE---SDSAV 117 W + P V +I H I+ + + + + +E D+ + Sbjct: 70 GTPWSAIEPAVTELIEGHKARRVIGIANPAGPGGAAGAAIGAGEAVAEEPVEVEADDAEL 129 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + RI ++LD +RP + +DGG + ++ + + +GAC GCPS+S + + N+L Sbjct: 130 LMRINQILDEHIRPFLDQDGGGLDVVKLKEFTLTVRYKGACGGCPSSSTGTLFAINNLLQ 189 Query: 178 HFV 180 ++V Sbjct: 190 NYV 192 >gi|288553995|ref|YP_003425930.1| hypothetical protein BpOF4_04870 [Bacillus pseudofirmus OF4] gi|288545155|gb|ADC49038.1| hypothetical protein BpOF4_04870 [Bacillus pseudofirmus OF4] Length = 79 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + + +V++++EVLD ++RP + RDGGD+ DGIV + + GAC CPS++ TLK G+ Sbjct: 3 TSTEMVEQVQEVLD-KLRPFLLRDGGDVELVEVEDGIVKVRLLGACGSCPSSTITLKAGI 61 Query: 173 ANILNHFVPEVKDIRTV 189 L VP VK+I V Sbjct: 62 ERALLEEVPGVKEIEQV 78 >gi|114331232|ref|YP_747454.1| NifU domain-containing protein [Nitrosomonas eutropha C91] gi|114308246|gb|ABI59489.1| nitrogen-fixing NifU domain protein [Nitrosomonas eutropha C91] Length = 186 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 16/187 (8%) Query: 4 QTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITV 63 + E TPNP LKFI + + ++NA++A PLA+ +F I + +V++ +IT+ Sbjct: 6 EIEGTPNPNALKFILKEPLTWGVTKSYNNAEQAADDPLAAALFDIDHVINVFYVDRWITI 65 Query: 64 GKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG-----DFIESDSAV 117 +D DW+ L V DPI D + + + E D Sbjct: 66 TQDGGADWQDLAREV----------ADPIRAAPAATDQSATVVAAASEALANLSEEDQQR 115 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++RI +L+ VRP + DGGD+ ++ + +GAC CPS+ G+ +L Sbjct: 116 LERINILLEEEVRPYLQHDGGDLHVLALEGSLLRIHYQGACGTCPSSISGTLRGIEQLLR 175 Query: 178 HFVPEVK 184 P+++ Sbjct: 176 TIEPDIR 182 >gi|258514732|ref|YP_003190954.1| nitrogen-fixing NifU domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257778437|gb|ACV62331.1| nitrogen-fixing NifU domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 73 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 2/69 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +++KEVL +VRP + RDGGD+ + DGIV + ++GACSGCP A TLK G+ +L Sbjct: 3 EKVKEVL-GKVRPYLQRDGGDVELVDITADGIVRVKLKGACSGCPGALITLKQGIERVLK 61 Query: 178 HFVPEVKDI 186 +PEVK + Sbjct: 62 QEIPEVKGV 70 >gi|294901264|ref|XP_002777311.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] gi|239884853|gb|EER09127.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] Length = 299 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 2/76 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKY 170 S + V +RI+ +LD RVRP +A+DGGD F + + G V L++ G+C GCP + +TLK Sbjct: 103 SSNEVEERIQSLLDTRVRPVIAQDGGDCEFISFDSQTGRVTLALHGSCEGCPQSVKTLKD 162 Query: 171 GVANILNHFVPEVKDI 186 + L +V EV + Sbjct: 163 SIERTLKFYVEEVSSV 178 >gi|291287157|ref|YP_003503973.1| nitrogen-fixing NifU domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290884317|gb|ADD68017.1| nitrogen-fixing NifU domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 75 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 QR++EVLD +VRP + DGGDI + DGIV + + GAC CP ++ TLK+GV L Sbjct: 5 QRVEEVLD-QVRPTLQADGGDIELLDVSEDGIVKVQLTGACGSCPFSTMTLKHGVEARLK 63 Query: 178 HFVPEVKDIRTV 189 +PEVK++ ++ Sbjct: 64 DMIPEVKEVLSI 75 >gi|329904748|ref|ZP_08273923.1| nitrogen-fixing NifU-like protein [Oxalobacteraceae bacterium IMCC9480] gi|327547851|gb|EGF32611.1| nitrogen-fixing NifU-like protein [Oxalobacteraceae bacterium IMCC9480] Length = 186 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 6/181 (3%) Query: 4 QTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITV 63 + +DTPNP +KF + + A + N +A PLA+ +F++ + +V++ ++TV Sbjct: 6 EIDDTPNPNAVKFTLHEPLSWGVAHAYDNPAQAAGDPLATALFALDHVTNVFYTDRWLTV 65 Query: 64 GKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIK 122 +D + DW P L ++ + P + + E + RI Sbjct: 66 TQDGEADW-----PALVRLIAVPLRAAPAAAAQSAELVSAARLAVHTMSEDEQDRFARIT 120 Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 ++LD ++RPA+ DGGD+ G + + +GAC CPS+ + N+L P+ Sbjct: 121 DLLDLQIRPALQADGGDLHVLGLSGDTLSIHYQGACGTCPSSIGGTLASIENLLRSIEPD 180 Query: 183 V 183 + Sbjct: 181 I 181 >gi|226314372|ref|YP_002774268.1| iron-sulfur cluster assembly protein [Brevibacillus brevis NBRC 100599] gi|226097322|dbj|BAH45764.1| putative iron-sulfur cluster assembly protein [Brevibacillus brevis NBRC 100599] Length = 89 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E + ++ +++EVLD ++RP + RDGGD+ DGIV L + GAC CPS++ TLK G Sbjct: 12 ECNMDIMDQVQEVLD-KLRPYLQRDGGDVQLVDVEDGIVKLRLMGACGSCPSSTITLKAG 70 Query: 172 VANILNHFVPEVKDIRTV 189 + L +P +K+++ V Sbjct: 71 IERALVEEIPGIKEVQQV 88 >gi|237734458|ref|ZP_04564939.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229382278|gb|EEO32369.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 75 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/63 (47%), Positives = 41/63 (65%) Query: 127 NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 N++RP + RDGGDI ++DGIV++ M GAC+GC ETLK GV IL VP V + Sbjct: 7 NKLRPYLNRDGGDIELIDFKDGIVYVKMLGACAGCSMLDETLKDGVEQILMEEVPGVLGV 66 Query: 187 RTV 189 + + Sbjct: 67 QNI 69 >gi|224543029|ref|ZP_03683568.1| hypothetical protein CATMIT_02223 [Catenibacterium mitsuokai DSM 15897] gi|224524054|gb|EEF93159.1| hypothetical protein CATMIT_02223 [Catenibacterium mitsuokai DSM 15897] Length = 84 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 49/72 (68%), Gaps = 1/72 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++ IKEV+ +++RP + RDGGD+ F ++DGIV++ M GAC+GC T+K GV IL Sbjct: 14 IEAIKEVI-HKLRPYLQRDGGDLEFVDFKDGIVYVHMLGACAGCMMLDSTIKDGVEQILI 72 Query: 178 HFVPEVKDIRTV 189 VP V +++ + Sbjct: 73 EEVPGVIEVQAI 84 >gi|261333257|emb|CBH16252.1| HIRA-interacting protein 5, putative [Trypanosoma brucei gambiense DAL972] Length = 337 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 5/120 (4%) Query: 70 WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRV 129 W L+ V ++ +H SG I + D + + DS VV +KE++ + Sbjct: 209 WSELKLHVSALLTDHLYSGRAHI-DADAPHPHPDTIPQ----DGDSEVVVVLKELISTTI 263 Query: 130 RPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 RP + DGGDI F G D ++ + M GAC C S+ TL+ + H+VPEV+ + V Sbjct: 264 RPQLQADGGDIRFVGLADSVMLVEMLGACRKCRSSKTTLRDMIERTTRHWVPEVQKVEEV 323 >gi|169333923|ref|ZP_02861116.1| hypothetical protein ANASTE_00309 [Anaerofustis stercorihominis DSM 17244] gi|169259488|gb|EDS73454.1| hypothetical protein ANASTE_00309 [Anaerofustis stercorihominis DSM 17244] Length = 100 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 48/72 (66%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 S ++++I++VL+ +VRP++ GGD+V K Y D I+ + + G CSGCP+A T + + Sbjct: 9 SMMIEKIEKVLNEKVRPSLNSHGGDVVIKSYEDNILRIKLIGKCSGCPAARTTNEDLIKI 68 Query: 175 ILNHFVPEVKDI 186 + +PEVKD+ Sbjct: 69 SVMEEIPEVKDV 80 >gi|300087175|ref|YP_003757697.1| nitrogen-fixing NifU domain-containing protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526908|gb|ADJ25376.1| nitrogen-fixing NifU domain protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 74 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 2/69 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +++KEVL+ +VRP + DGGD+ + DGIV + + G+C+GCP + TLK G+ IL Sbjct: 3 EKVKEVLE-QVRPNLQADGGDVELVSVSEDGIVTVKLTGSCAGCPMSQMTLKNGIERILK 61 Query: 178 HFVPEVKDI 186 VPEVK++ Sbjct: 62 REVPEVKEV 70 >gi|157874760|ref|XP_001685794.1| hypothetical protein [Leishmania major strain Friedlin] gi|68128867|emb|CAJ06031.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 426 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 7/125 (5%) Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLD 126 + DW L+ V ++ +H SG+P H D E DS VV IKE++ Sbjct: 216 ETDWSELKLHVSALLTDHICSGNP--HVDPSAPHPHADTAPE---EGDSEVVLMIKELVS 270 Query: 127 NRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVK 184 +RP + DGGD+ F G+ G + + + GAC C S+ TL + H++PEV Sbjct: 271 TTIRPQLQDDGGDLRFVGFDPVLGDMHVELLGACRTCKSSKTTLVDLIERTTRHWIPEVS 330 Query: 185 DIRTV 189 +R V Sbjct: 331 AVRDV 335 >gi|322494548|emb|CBZ29850.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 426 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 7/125 (5%) Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLD 126 + DW L+ V ++ +H SG+P + + D + E DS VV IKE++ Sbjct: 216 ETDWSELKLHVSALLTDHICSGNPHV-DPSSSHPHADTLPE----EGDSEVVLLIKELVS 270 Query: 127 NRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVK 184 +RP + DGGD+ F G+ G + + + GAC C S+ TL + H++PEV+ Sbjct: 271 TTIRPQLQDDGGDLRFVGFDPVLGDMHVELLGACRTCKSSKTTLVDLIERTTRHWIPEVR 330 Query: 185 DIRTV 189 ++ V Sbjct: 331 AVKDV 335 >gi|319938275|ref|ZP_08012672.1| Fe/S-biogenesis protein NfuA [Coprobacillus sp. 29_1] gi|319806568|gb|EFW03226.1| Fe/S-biogenesis protein NfuA [Coprobacillus sp. 29_1] Length = 74 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + IK+V+ +++RP + RDGGDI F + +GIV++ M GAC+GC TLK GV IL Sbjct: 5 EEIKKVI-HKLRPYLQRDGGDIEFIKFEEGIVYVQMHGACAGCTMLDATLKDGVEQILIE 63 Query: 179 FVPEVKDIRTV 189 VP V +++ + Sbjct: 64 EVPGVLEVQAI 74 >gi|283768905|ref|ZP_06341815.1| NifU-like domain protein [Bulleidia extructa W1219] gi|283104458|gb|EFC05832.1| NifU-like domain protein [Bulleidia extructa W1219] Length = 100 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +++RI+ LD ++RP + DGGD G+ DG V +SM GAC GC TL G+ IL Sbjct: 17 LLKRIQHTLD-KIRPYIQADGGDCELVGFDDGTVIISMTGACQGCGIIDITLNDGIKAIL 75 Query: 177 NHFVPEVKDIRTV 189 VPEVKD++ + Sbjct: 76 MDEVPEVKDVKML 88 >gi|294897644|ref|XP_002776034.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] gi|239882510|gb|EER07850.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] Length = 154 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 77/144 (53%), Gaps = 12/144 (8%) Query: 48 IPGIASVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHF-ISGDPIIHNGGLG-DMKLDD 104 I G+ V + + V K DW ++P V ++ F + G ++ L + ++++ Sbjct: 1 IEGVERVVLTHHNVAVSKVSSIDWCFVKPKVESVLSNFFAVPGLQSVYRYALQFETEVEE 60 Query: 105 MGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCP 162 +E RI EVLD+R+RP + DGGD+ + + G++ + ++GAC+GCP Sbjct: 61 AEKAKLME-------RIAEVLDDRIRPVLQDDGGDVDVADFDEETGVLSVRLKGACAGCP 113 Query: 163 SASETLKYGVANILNHFVPEVKDI 186 +S TL++ + N+L VPEVK + Sbjct: 114 MSSVTLRFRIENMLVQSVPEVKKV 137 >gi|56964703|ref|YP_176434.1| nitrogen fixation protein [Bacillus clausii KSM-K16] gi|56910946|dbj|BAD65473.1| nitrogen fixation protein [Bacillus clausii KSM-K16] Length = 79 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 51/79 (64%), Gaps = 1/79 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 +E+ + ++++++EVLD ++RP + RDGGD+ DG+V + + GAC CPS++ TLK Sbjct: 1 METSTELMEQVQEVLD-KLRPFLLRDGGDVELIDVEDGVVKVRLLGACGSCPSSTITLKA 59 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ L VP + +I V Sbjct: 60 GIERALLEEVPGITEIEQV 78 >gi|71748540|ref|XP_823325.1| HIRA-interacting protein 5 [Trypanosoma brucei TREU927] gi|70832993|gb|EAN78497.1| HIRA-interacting protein 5, putative [Trypanosoma brucei] Length = 243 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 44/76 (57%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 DS VV +KE++ +RP + DGGDI F G D ++ + M GAC C S+ TL+ + Sbjct: 154 DSEVVVVLKELISTTIRPQLQADGGDIRFVGLADSVMLVEMLGACRKCRSSKTTLRDMIE 213 Query: 174 NILNHFVPEVKDIRTV 189 H+VPEV+ + V Sbjct: 214 RTTRHWVPEVQKVEEV 229 >gi|224437749|ref|ZP_03658696.1| hypothetical protein HcinC1_07235 [Helicobacter cinaedi CCUG 18818] gi|313144195|ref|ZP_07806388.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313129226|gb|EFR46843.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 86 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 39/60 (65%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +Q E++ ++VRP + DGGDI G RD V++ + GAC GCPS++ TLKY + N L Sbjct: 9 LQTPVELVIDKVRPTLTLDGGDITLLGIRDAKVYVRLEGACKGCPSSANTLKYAIENRLK 68 >gi|123976981|ref|XP_001314690.1| NifU-like domain containing protein [Trichomonas vaginalis G3] gi|121897307|gb|EAY02432.1| NifU-like domain containing protein [Trichomonas vaginalis G3] Length = 103 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 38/69 (55%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 F ++ ++ V+D RVRP + DGGDIV K DGIV + + G CSGCPS TL Sbjct: 18 FAKATKEFFDKVNAVIDERVRPVLQMDGGDIVLKDITDGIVSVQLTGHCSGCPSRKNTLN 77 Query: 170 YGVANILNH 178 G+ L Sbjct: 78 AGILGCLQE 86 >gi|167042854|gb|ABZ07571.1| putative NifU-like domain protein [uncultured marine microorganism HF4000_ANIW137J11] Length = 225 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 92/185 (49%), Gaps = 16/185 (8%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I+ E T + +F+ + L +G F++ AE +PLA +F++P +++V D ++ Sbjct: 6 IRGEPTADQQVCRFVVDRS-LHDGNASFTSTAAAEGAPLAEALFALPDVSAVTIARDTVS 64 Query: 63 VGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 V K +W + + I SG+P + G+M SG+ + +R+ Sbjct: 65 VTKQGDAEWPEIGKLIGDAIRAQIASGEPAV-----GEMT---PASGE------ELFERV 110 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP 181 + VL N + P++A GG + + +G ++ M G C GC A TLK+G+ + L VP Sbjct: 111 QAVLVNEINPSIANHGGVVTLQRIEEGKAYVQMGGGCQGCGMADVTLKHGIESYLRQKVP 170 Query: 182 EVKDI 186 E+ ++ Sbjct: 171 EISEV 175 >gi|189485737|ref|YP_001956678.1| hypothetical protein TGRD_734 [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287696|dbj|BAG14217.1| conserved hypothetical protein [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 75 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 49/72 (68%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +++++ L++ VRP + D GD+ + DGIV + + G+C GCP A+ TL+YGV N + Sbjct: 5 EKVEKALES-VRPHLQADCGDVELIDVSEDGIVKVKLTGSCGGCPMAAMTLQYGVTNTIK 63 Query: 178 HFVPEVKDIRTV 189 VPEVKD++++ Sbjct: 64 QAVPEVKDVQSI 75 >gi|291279936|ref|YP_003496771.1| nitrogen-fixing NifU domain protein [Deferribacter desulfuricans SSM1] gi|290754638|dbj|BAI81015.1| nitrogen-fixing NifU domain protein [Deferribacter desulfuricans SSM1] Length = 75 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 2/69 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +R++EVL N+VRP + DGGD+ + DG+V + + GAC CP ++ TLK+G+ L Sbjct: 5 ERVQEVL-NQVRPGLQADGGDVELLDVTEDGVVKVQLTGACGSCPFSTMTLKHGIEMRLK 63 Query: 178 HFVPEVKDI 186 +PEVK++ Sbjct: 64 EMIPEVKEV 72 >gi|317130102|ref|YP_004096384.1| nitrogen-fixing NifU domain protein [Bacillus cellulosilyticus DSM 2522] gi|315475050|gb|ADU31653.1| nitrogen-fixing NifU domain protein [Bacillus cellulosilyticus DSM 2522] Length = 78 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +++ + +++EVLD ++RP + RDGGD+ DGIV + + GAC CPS++ TLK G+ Sbjct: 2 AEATMESQVQEVLD-KLRPFLLRDGGDVELVDVEDGIVKVRLMGACGSCPSSTITLKAGI 60 Query: 173 ANILNHFVPEVKDIRTV 189 L VP VK++ V Sbjct: 61 ERALLEEVPGVKELEQV 77 >gi|307720216|ref|YP_003891356.1| nitrogen-fixing NifU domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306978309|gb|ADN08344.1| nitrogen-fixing NifU domain protein [Sulfurimonas autotrophica DSM 16294] Length = 91 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 2/72 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD +++ +K V+D +VRP++A DGGDI F ++G V++ ++GAC GC S+ TLKYGV Sbjct: 5 SDEELLEPVKHVID-KVRPSLALDGGDIDFITVKNGNVYVQLKGACIGCASSGSTLKYGV 63 Query: 173 ANILNHFV-PEV 183 L + PE+ Sbjct: 64 ERQLRMDIHPEI 75 >gi|32267366|ref|NP_861398.1| hypothetical protein HH1867 [Helicobacter hepaticus ATCC 51449] gi|32263419|gb|AAP78464.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 91 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 36/56 (64%) Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 E++ +VRP + DGGDI G +D V++ + GAC GCPS++ TLKY + N L Sbjct: 14 EIVIQKVRPTLTLDGGDITLLGIKDAKVYVRLEGACKGCPSSANTLKYAIENRLKE 69 >gi|146097555|ref|XP_001468136.1| hypothetical protein [Leishmania infantum] gi|134072503|emb|CAM71216.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 448 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 11/127 (8%) Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI--ESDSAVVQRIKEV 124 + DW L+ V ++ +H SG+P + D + E DS VV IKE+ Sbjct: 238 ETDWSELKLHVSALLTDHICSGNPHVDPSA-------PHPHADTVPEEGDSEVVLMIKEL 290 Query: 125 LDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 + +RP + DGGD+ F G+ G + + + GAC C S+ TL + H++PE Sbjct: 291 VSTTIRPQLQDDGGDLRFVGFDPVLGDMHVELLGACRTCKSSKTTLVDLIERTTRHWIPE 350 Query: 183 VKDIRTV 189 V ++ V Sbjct: 351 VSAVKDV 357 >gi|295401381|ref|ZP_06811352.1| nitrogen-fixing NifU domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|312109659|ref|YP_003987975.1| nitrogen-fixing NifU domain protein [Geobacillus sp. Y4.1MC1] gi|294976596|gb|EFG52203.1| nitrogen-fixing NifU domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|311214760|gb|ADP73364.1| nitrogen-fixing NifU domain protein [Geobacillus sp. Y4.1MC1] Length = 78 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD + ++++EVLD ++RP + RDGGD DG+V L + GAC CPS++ TLK G+ Sbjct: 2 SDQEIKEQVQEVLD-KLRPFLLRDGGDCELIDVEDGVVKLRLLGACGSCPSSTITLKAGI 60 Query: 173 ANILNHFVPEVKDIRTV 189 L VP + ++ V Sbjct: 61 ERALLEEVPGIVEVEQV 77 >gi|322502114|emb|CBZ37197.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 448 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 11/127 (8%) Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI--ESDSAVVQRIKEV 124 + DW L+ V ++ +H SG+P + D + E DS VV IKE+ Sbjct: 238 ETDWSELKLHVSALLTDHICSGNPHVDPSA-------PHPHADTVPEEGDSEVVLMIKEL 290 Query: 125 LDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 + +RP + DGGD+ F G+ G + + + GAC C S+ TL + H++PE Sbjct: 291 VSTTIRPQLQDDGGDLRFVGFDPVLGDMHVELLGACRTCKSSKTTLVDLIERTTRHWIPE 350 Query: 183 VKDIRTV 189 V ++ V Sbjct: 351 VSAVKDV 357 >gi|293375093|ref|ZP_06621383.1| NifU-like protein [Turicibacter sanguinis PC909] gi|325841245|ref|ZP_08167346.1| NifU-like protein [Turicibacter sp. HGF1] gi|292646287|gb|EFF64307.1| NifU-like protein [Turicibacter sanguinis PC909] gi|325489926|gb|EGC92273.1| NifU-like protein [Turicibacter sp. HGF1] Length = 78 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I E+L+ ++RP + RDGGD+ + + DGIV++ M GAC GC S TLK G+ IL Sbjct: 6 KQIVEILE-KLRPYLQRDGGDVEYIKFEDGIVYVRMLGACVGCASMDSTLKDGIEQILLE 64 Query: 179 FVPEVKDIRTV 189 VP V + V Sbjct: 65 EVPGVIGVENV 75 >gi|71029204|ref|XP_764245.1| hypothetical protein [Theileria parva strain Muguga] gi|68351199|gb|EAN31962.1| hypothetical protein TP04_0610 [Theileria parva] Length = 180 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 2/82 (2%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASET 167 + + D V+ IK ++D R+RP + +DGGD+ F Y G V++ + GAC GC + T Sbjct: 84 YSDEDIETVESIKILIDKRIRPVIQQDGGDVSFVSYDPSTGYVYVRLSGACVGCIQSDVT 143 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 LK+ + +L H++ E+ + V Sbjct: 144 LKHMIQGMLCHYLEEITAVYNV 165 >gi|315453542|ref|YP_004073812.1| nifU protein-like protein [Helicobacter felis ATCC 49179] gi|315132594|emb|CBY83222.1| nifU protein homolog [Helicobacter felis ATCC 49179] Length = 89 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 I SD + + +++ L+ +VRP + RDGGD+V G ++ V++S+ GAC GC S++ TLK Sbjct: 1 MIFSDQELQKPVEKALE-KVRPMLLRDGGDVVLLGIKNAKVYVSLEGACKGCASSANTLK 59 Query: 170 YGVANILNH 178 +G+ L Sbjct: 60 FGIERCLQE 68 >gi|229816700|ref|ZP_04446988.1| hypothetical protein COLINT_03748 [Collinsella intestinalis DSM 13280] gi|229807752|gb|EEP43566.1| hypothetical protein COLINT_03748 [Collinsella intestinalis DSM 13280] Length = 98 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 2/70 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +KEVL+ ++RP + DGGD+ + G DG+V L ++GAC+GCP +S TL GV IL Sbjct: 13 LKEVLE-QIRPNLQADGGDMEYIGVTEDGVVKLELQGACAGCPMSSLTLSMGVERILKEH 71 Query: 180 VPEVKDIRTV 189 VP V + V Sbjct: 72 VPGVTRVEQV 81 >gi|218192692|gb|EEC75119.1| hypothetical protein OsI_11301 [Oryza sativa Indica Group] Length = 288 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + + VLD+ VRP + DGGD+ DG++ L + GAC CPS++ T+K G Sbjct: 72 ETYELTAENVDRVLDD-VRPYLIADGGDVTVASVEDGVISLKLEGACGSCPSSTTTMKMG 130 Query: 172 VANILNH-FVPEVKDIRTV 189 + +L F VKDIR V Sbjct: 131 IERVLKEKFGDAVKDIRQV 149 >gi|282875569|ref|ZP_06284440.1| NifU-like protein [Staphylococcus epidermidis SK135] gi|281295596|gb|EFA88119.1| NifU-like protein [Staphylococcus epidermidis SK135] Length = 80 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +S + ++ EV++ R+RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 4 ENSTMFDQVAEVIE-RLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGI 62 Query: 173 ANILNHFVPEVKDIRTV 189 L+ VP V ++ V Sbjct: 63 ERALHEEVPGVIEVEQV 79 >gi|258516727|ref|YP_003192949.1| nitrogen-fixing NifU domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257780432|gb|ACV64326.1| nitrogen-fixing NifU domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 73 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 2/69 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++++EVL +VRP + RDGGD+ DG+V + ++GACSG P A+ TLK G+ +L Sbjct: 3 EKVEEVL-GKVRPYLQRDGGDVELVDITPDGVVQVKLKGACSGUPGATITLKQGIERVLK 61 Query: 178 HFVPEVKDI 186 VPEVK + Sbjct: 62 QEVPEVKGV 70 >gi|295695724|ref|YP_003588962.1| nitrogen-fixing NifU domain protein [Bacillus tusciae DSM 2912] gi|295411326|gb|ADG05818.1| nitrogen-fixing NifU domain protein [Bacillus tusciae DSM 2912] Length = 73 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++++E L+ R+RP + DGGD+ DG+V L + GAC CP ++ TLK G+ L Sbjct: 4 EKVEEALE-RIRPGLQFDGGDVELVDVEDGVVTLHLIGACGACPMSTMTLKMGIERALRA 62 Query: 179 FVPEVKDIRTV 189 VPEVK++ V Sbjct: 63 AVPEVKEVIAV 73 >gi|15923926|ref|NP_371460.1| hypothetical protein SAV0936 [Staphylococcus aureus subsp. aureus Mu50] gi|15926525|ref|NP_374058.1| hypothetical protein SA0797 [Staphylococcus aureus subsp. aureus N315] gi|21282547|ref|NP_645635.1| hypothetical protein MW0818 [Staphylococcus aureus subsp. aureus MW2] gi|49483096|ref|YP_040320.1| hypothetical protein SAR0898 [Staphylococcus aureus subsp. aureus MRSA252] gi|49485712|ref|YP_042933.1| hypothetical protein SAS0806 [Staphylococcus aureus subsp. aureus MSSA476] gi|82750551|ref|YP_416292.1| hypothetical protein SAB0802c [Staphylococcus aureus RF122] gi|87159950|ref|YP_493539.1| hypothetical protein SAUSA300_0839 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194630|ref|YP_499426.1| hypothetical protein SAOUHSC_00873 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267370|ref|YP_001246313.1| NifU domain-containing protein [Staphylococcus aureus subsp. aureus JH9] gi|150393423|ref|YP_001316098.1| NifU domain-containing protein [Staphylococcus aureus subsp. aureus JH1] gi|151221019|ref|YP_001331841.1| hypothetical protein NWMN_0807 [Staphylococcus aureus subsp. aureus str. Newman] gi|156979262|ref|YP_001441521.1| hypothetical protein SAHV_0931 [Staphylococcus aureus subsp. aureus Mu3] gi|161509138|ref|YP_001574797.1| hypothetical protein USA300HOU_0897 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141927|ref|ZP_03566420.1| hypothetical protein SauraJ_09890 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316824|ref|ZP_04840037.1| hypothetical protein SauraC_11885 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731543|ref|ZP_04865708.1| NifU family protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253732709|ref|ZP_04866874.1| NifU family protein [Staphylococcus aureus subsp. aureus TCH130] gi|255005726|ref|ZP_05144327.2| hypothetical protein SauraM_04635 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257424985|ref|ZP_05601412.1| nitrogen fixation protein NifU [Staphylococcus aureus subsp. aureus 55/2053] gi|257427651|ref|ZP_05604050.1| nitrogen-fixing NifU domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430286|ref|ZP_05606669.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432983|ref|ZP_05609343.1| nitrogen fixation protein [Staphylococcus aureus subsp. aureus E1410] gi|257435887|ref|ZP_05611935.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|257795329|ref|ZP_05644308.1| nitrogen fixation protein NifU [Staphylococcus aureus A9781] gi|258406978|ref|ZP_05680131.1| nitrogen fixation protein NifU [Staphylococcus aureus A9763] gi|258421946|ref|ZP_05684867.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|258424377|ref|ZP_05687257.1| nitrogen fixation protein [Staphylococcus aureus A9635] gi|258435343|ref|ZP_05689082.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258441555|ref|ZP_05690915.1| nitrogen-fixing NifU domain-containing protein [Staphylococcus aureus A8115] gi|258447254|ref|ZP_05695403.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|258450014|ref|ZP_05698112.1| nitrogen fixation protein NifU [Staphylococcus aureus A6224] gi|258452112|ref|ZP_05700128.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|258455527|ref|ZP_05703486.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|262049630|ref|ZP_06022498.1| hypothetical protein SAD30_1213 [Staphylococcus aureus D30] gi|262052935|ref|ZP_06025116.1| hypothetical protein SA930_0147 [Staphylococcus aureus 930918-3] gi|269202551|ref|YP_003281820.1| NifU domain-containing protein [Staphylococcus aureus subsp. aureus ED98] gi|282893963|ref|ZP_06302194.1| thioredoxin [Staphylococcus aureus A8117] gi|282903473|ref|ZP_06311364.1| NifU domain protein [Staphylococcus aureus subsp. aureus C160] gi|282905251|ref|ZP_06313108.1| thioredoxin-family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282908231|ref|ZP_06316062.1| nitrogen-fixing NifU domain-containing protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910512|ref|ZP_06318316.1| nitrogen-fixing NifU domain-containing protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282913708|ref|ZP_06321497.1| NifU domain protein [Staphylococcus aureus subsp. aureus M899] gi|282916186|ref|ZP_06323948.1| thioredoxin-like protein [Staphylococcus aureus subsp. aureus D139] gi|282918634|ref|ZP_06326371.1| thioredoxin-like protein [Staphylococcus aureus subsp. aureus C427] gi|282922215|ref|ZP_06329910.1| thioredoxin-like protein [Staphylococcus aureus A9765] gi|282923624|ref|ZP_06331304.1| thioredoxin-like protein [Staphylococcus aureus subsp. aureus C101] gi|282927159|ref|ZP_06334781.1| thioredoxin-like protein [Staphylococcus aureus A10102] gi|283770001|ref|ZP_06342893.1| thioredoxin protein [Staphylococcus aureus subsp. aureus H19] gi|283957674|ref|ZP_06375127.1| NifU domain-containing protein [Staphylococcus aureus subsp. aureus A017934/97] gi|284023863|ref|ZP_06378261.1| NifU domain-containing protein [Staphylococcus aureus subsp. aureus 132] gi|293500750|ref|ZP_06666601.1| thioredoxin protein [Staphylococcus aureus subsp. aureus 58-424] gi|293509700|ref|ZP_06668411.1| nitrogen-fixing NifU domain-containing protein [Staphylococcus aureus subsp. aureus M809] gi|293524288|ref|ZP_06670975.1| NifU domain protein [Staphylococcus aureus subsp. aureus M1015] gi|294850211|ref|ZP_06790947.1| thioredoxin-like protein [Staphylococcus aureus A9754] gi|295405741|ref|ZP_06815550.1| thioredoxin-like protein [Staphylococcus aureus A8819] gi|295427419|ref|ZP_06820054.1| thioredoxin-like protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275869|ref|ZP_06858376.1| NifU domain-containing protein [Staphylococcus aureus subsp. aureus MR1] gi|297208429|ref|ZP_06924859.1| NifU domain protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245332|ref|ZP_06929203.1| hypothetical protein SLAG_01427 [Staphylococcus aureus A8796] gi|297590221|ref|ZP_06948860.1| NifU domain protein [Staphylococcus aureus subsp. aureus MN8] gi|300912505|ref|ZP_07129948.1| NifU domain protein [Staphylococcus aureus subsp. aureus TCH70] gi|304381511|ref|ZP_07364161.1| NifU domain protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13700740|dbj|BAB42036.1| SA0797 [Staphylococcus aureus subsp. aureus N315] gi|14246705|dbj|BAB57098.1| nitrogen fixation protein NifU [Staphylococcus aureus subsp. aureus Mu50] gi|21203984|dbj|BAB94683.1| MW0818 [Staphylococcus aureus subsp. aureus MW2] gi|49241225|emb|CAG39904.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244155|emb|CAG42581.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82656082|emb|CAI80490.1| nitrogen fixation protein [Staphylococcus aureus RF122] gi|87125924|gb|ABD20438.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202188|gb|ABD29998.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740439|gb|ABQ48737.1| nitrogen-fixing NifU domain protein [Staphylococcus aureus subsp. aureus JH9] gi|149945875|gb|ABR51811.1| nitrogen-fixing NifU domain protein [Staphylococcus aureus subsp. aureus JH1] gi|150373819|dbj|BAF67079.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156721397|dbj|BAF77814.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160367947|gb|ABX28918.1| possible NifU family protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724786|gb|EES93515.1| NifU family protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253729320|gb|EES98049.1| NifU family protein [Staphylococcus aureus subsp. aureus TCH130] gi|257272555|gb|EEV04678.1| nitrogen fixation protein NifU [Staphylococcus aureus subsp. aureus 55/2053] gi|257275844|gb|EEV07317.1| nitrogen-fixing NifU domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279063|gb|EEV09674.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282398|gb|EEV12533.1| nitrogen fixation protein [Staphylococcus aureus subsp. aureus E1410] gi|257285078|gb|EEV15197.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|257789301|gb|EEV27641.1| nitrogen fixation protein NifU [Staphylococcus aureus A9781] gi|257841517|gb|EEV65958.1| nitrogen fixation protein NifU [Staphylococcus aureus A9763] gi|257842279|gb|EEV66707.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|257845390|gb|EEV69424.1| nitrogen fixation protein [Staphylococcus aureus A9635] gi|257849004|gb|EEV72987.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257852345|gb|EEV76271.1| nitrogen-fixing NifU domain-containing protein [Staphylococcus aureus A8115] gi|257854002|gb|EEV76956.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|257856934|gb|EEV79837.1| nitrogen fixation protein NifU [Staphylococcus aureus A6224] gi|257860327|gb|EEV83159.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|257862345|gb|EEV85114.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|259159186|gb|EEW44249.1| hypothetical protein SA930_0147 [Staphylococcus aureus 930918-3] gi|259162272|gb|EEW46846.1| hypothetical protein SAD30_1213 [Staphylococcus aureus D30] gi|262074841|gb|ACY10814.1| NifU domain-containing protein [Staphylococcus aureus subsp. aureus ED98] gi|269940438|emb|CBI48815.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282314492|gb|EFB44882.1| thioredoxin-like protein [Staphylococcus aureus subsp. aureus C101] gi|282317768|gb|EFB48140.1| thioredoxin-like protein [Staphylococcus aureus subsp. aureus C427] gi|282319626|gb|EFB49974.1| thioredoxin-like protein [Staphylococcus aureus subsp. aureus D139] gi|282322740|gb|EFB53062.1| NifU domain protein [Staphylococcus aureus subsp. aureus M899] gi|282325904|gb|EFB56212.1| nitrogen-fixing NifU domain-containing protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282327896|gb|EFB58178.1| nitrogen-fixing NifU domain-containing protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331658|gb|EFB61170.1| thioredoxin-family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282590848|gb|EFB95923.1| thioredoxin-like protein [Staphylococcus aureus A10102] gi|282593505|gb|EFB98499.1| thioredoxin-like protein [Staphylococcus aureus A9765] gi|282596428|gb|EFC01389.1| NifU domain protein [Staphylococcus aureus subsp. aureus C160] gi|282763449|gb|EFC03578.1| thioredoxin [Staphylococcus aureus A8117] gi|283460148|gb|EFC07238.1| thioredoxin protein [Staphylococcus aureus subsp. aureus H19] gi|283470135|emb|CAQ49346.1| nitrogen fixation protein NifU [Staphylococcus aureus subsp. aureus ST398] gi|283791125|gb|EFC29940.1| NifU domain-containing protein [Staphylococcus aureus subsp. aureus A017934/97] gi|285816615|gb|ADC37102.1| nitrogen-fixing NifU domain protein [Staphylococcus aureus 04-02981] gi|290921251|gb|EFD98312.1| NifU domain protein [Staphylococcus aureus subsp. aureus M1015] gi|291095755|gb|EFE26016.1| thioredoxin protein [Staphylococcus aureus subsp. aureus 58-424] gi|291467797|gb|EFF10312.1| nitrogen-fixing NifU domain-containing protein [Staphylococcus aureus subsp. aureus M809] gi|294822985|gb|EFG39418.1| thioredoxin-like protein [Staphylococcus aureus A9754] gi|294969176|gb|EFG45196.1| thioredoxin-like protein [Staphylococcus aureus A8819] gi|295128807|gb|EFG58438.1| thioredoxin-like protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887168|gb|EFH26071.1| NifU domain protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177635|gb|EFH36885.1| hypothetical protein SLAG_01427 [Staphylococcus aureus A8796] gi|297576520|gb|EFH95235.1| NifU domain protein [Staphylococcus aureus subsp. aureus MN8] gi|298694175|gb|ADI97397.1| nitrogen fixation protein [Staphylococcus aureus subsp. aureus ED133] gi|300886751|gb|EFK81953.1| NifU domain protein [Staphylococcus aureus subsp. aureus TCH70] gi|302332549|gb|ADL22742.1| nitrogen-fixing NifU domain protein [Staphylococcus aureus subsp. aureus JKD6159] gi|302750764|gb|ADL64941.1| nitrogen-fixing NifU domain protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339874|gb|EFM05818.1| NifU domain protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438702|gb|ADQ77773.1| NifU domain protein [Staphylococcus aureus subsp. aureus TCH60] gi|312829333|emb|CBX34175.1| nifU-like domain protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130484|gb|EFT86471.1| possible NifU family protein [Staphylococcus aureus subsp. aureus CGS03] gi|315194468|gb|EFU24860.1| possible NifU family protein [Staphylococcus aureus subsp. aureus CGS00] gi|315197289|gb|EFU27627.1| possible NifU family protein [Staphylococcus aureus subsp. aureus CGS01] gi|320141247|gb|EFW33094.1| NifU-like domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143019|gb|EFW34810.1| NifU-like domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323440910|gb|EGA98618.1| NifU domain-containing protein [Staphylococcus aureus O11] gi|323443798|gb|EGB01410.1| NifU domain-containing protein [Staphylococcus aureus O46] gi|329313603|gb|AEB88016.1| Nitrogen-fixing NifU domain protein [Staphylococcus aureus subsp. aureus T0131] gi|329726251|gb|EGG62721.1| NifU-like protein [Staphylococcus aureus subsp. aureus 21189] gi|329728166|gb|EGG64605.1| NifU-like protein [Staphylococcus aureus subsp. aureus 21172] gi|329733972|gb|EGG70294.1| NifU-like protein [Staphylococcus aureus subsp. aureus 21193] Length = 80 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 D+ + ++ EV++ R+RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 4 EDTTMFDQVAEVIE-RLRPFLLRDGGDCSLIDVEDGIVKLQLHGACGTCPSSTITLKAGI 62 Query: 173 ANILNHFVPEVKDIRTV 189 L+ VP V ++ V Sbjct: 63 ERALHEEVPGVIEVEQV 79 >gi|189426530|ref|YP_001953707.1| nitrogen-fixing NifU domain protein [Geobacter lovleyi SZ] gi|189422789|gb|ACD97187.1| nitrogen-fixing NifU domain protein [Geobacter lovleyi SZ] Length = 74 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 ++++++ VLD +VRP + RDGGD+ + + DGIV + ++GAC CP ++ TLK G+ Sbjct: 1 MIEKVQAVLD-QVRPMLQRDGGDVELIEVTADGIVKVKLQGACGSCPMSTMTLKMGIEKA 59 Query: 176 LNHFVPEVKDIRTV 189 + +PE+ +++ V Sbjct: 60 IKEQIPEIVEVQQV 73 >gi|222624810|gb|EEE58942.1| hypothetical protein OsJ_10617 [Oryza sativa Japonica Group] Length = 224 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + + VLD+ VRP + DGGD+ DG++ L + GAC CPS++ T+K G Sbjct: 72 ETYELTAENVDRVLDD-VRPYLIADGGDVTVASVEDGVISLKLEGACGSCPSSTTTMKMG 130 Query: 172 VANILNH-FVPEVKDIRTV 189 + +L F VKDIR V Sbjct: 131 IERVLKEKFGDAVKDIRQV 149 >gi|115452669|ref|NP_001049935.1| Os03g0314700 [Oryza sativa Japonica Group] gi|108707815|gb|ABF95610.1| NifU-like domain containing protein, expressed [Oryza sativa Japonica Group] gi|113548406|dbj|BAF11849.1| Os03g0314700 [Oryza sativa Japonica Group] gi|215697309|dbj|BAG91303.1| unnamed protein product [Oryza sativa Japonica Group] Length = 224 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + + VLD+ VRP + DGGD+ DG++ L + GAC CPS++ T+K G Sbjct: 72 ETYELTAENVDRVLDD-VRPYLIADGGDVTVASVEDGVISLKLEGACGSCPSSTTTMKMG 130 Query: 172 VANILNH-FVPEVKDIRTV 189 + +L F VKDIR V Sbjct: 131 IERVLKEKFGDAVKDIRQV 149 >gi|223984131|ref|ZP_03634283.1| hypothetical protein HOLDEFILI_01575 [Holdemania filiformis DSM 12042] gi|223963925|gb|EEF68285.1| hypothetical protein HOLDEFILI_01575 [Holdemania filiformis DSM 12042] Length = 82 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 ++K V++ ++RP + RDGGD+ F DGIV + M GACS C S TLK G+ IL Sbjct: 7 QVKNVIE-KIRPYIQRDGGDVEFVSLEDGIVTVKMLGACSECLSLDATLKDGIEAILLDE 65 Query: 180 VPEVKDIR 187 VP V ++R Sbjct: 66 VPGVTEVR 73 >gi|332968729|gb|EGK07781.1| NifU domain protein [Desmospora sp. 8437] Length = 73 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++++EVLD ++RP + RDGGD+ DG+V + + GAC CPS++ TLK G+ L Sbjct: 3 EQVQEVLD-KLRPFIQRDGGDVELVNVEDGVVKVRLLGACGSCPSSTITLKAGIERALME 61 Query: 179 FVPEVKDIRTV 189 +P V ++ V Sbjct: 62 EIPGVTEVEQV 72 >gi|229543324|ref|ZP_04432384.1| nitrogen-fixing NifU domain protein [Bacillus coagulans 36D1] gi|229327744|gb|EEN93419.1| nitrogen-fixing NifU domain protein [Bacillus coagulans 36D1] Length = 78 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 + ++++EVLD ++RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 5 TITEQVQEVLD-KLRPFLLRDGGDCELIDVEDGIVKLRLLGACGSCPSSTITLKAGIERA 63 Query: 176 LNHFVPEVKDIRTV 189 L VP V ++ V Sbjct: 64 LFEEVPGVMEVEQV 77 >gi|152012745|gb|AAI50438.1| Hirip5 protein [Danio rerio] Length = 157 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 6/101 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFS---NAKEAEISPLASRIFSIPGIASVYFG 57 MFIQT+DTPNP +LKF+PG+ VL G + F+ +A A+ +P + I + Sbjct: 51 MFIQTQDTPNPNSLKFLPGRAVLDSGTMDFAGPRDAPRADTAPSEDDDEVVAMIKELLDT 110 Query: 58 YDFITVGKD---QYDWEHLRPPVLGMIMEHFISGDPIIHNG 95 TV +D + +W+ ++P V IM+ F SG P+++ Sbjct: 111 RIRPTVQEDGSGETEWKVIKPDVFATIMDFFTSGLPVVNEA 151 Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 3/86 (3%) Query: 84 HFISGDPIIHNGGLGDMKLDDMGSGDFI--ESDSAVVQRIKEVLDNRVRPAVARDG-GDI 140 F+ G ++ +G + D D E D VV IKE+LD R+RP V DG G+ Sbjct: 65 KFLPGRAVLDSGTMDFAGPRDAPRADTAPSEDDDEVVAMIKELLDTRIRPTVQEDGSGET 124 Query: 141 VFKGYRDGIVFLSMRGACSGCPSASE 166 +K + + M SG P +E Sbjct: 125 EWKVIKPDVFATIMDFFTSGLPVVNE 150 >gi|313673639|ref|YP_004051750.1| nitrogen-fixing nifu domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940395|gb|ADR19587.1| nitrogen-fixing NifU domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 75 Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 2/69 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILN 177 +R++EVL +VRPA+ DGGD+ G D G+V + + GAC CP ++ TLK+G+ L Sbjct: 5 ERVEEVL-KKVRPALQADGGDVELLGVTDDGVVKVQLTGACGSCPFSTMTLKHGIEMRLK 63 Query: 178 HFVPEVKDI 186 +PE+K++ Sbjct: 64 DEIPEIKEV 72 >gi|210630137|ref|ZP_03296252.1| hypothetical protein COLSTE_00136 [Collinsella stercoris DSM 13279] gi|210160610|gb|EEA91581.1| hypothetical protein COLSTE_00136 [Collinsella stercoris DSM 13279] Length = 93 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILN 177 Q + EVL+ ++RP + DGGD+ + G D G+V L ++GAC+GCP +S TL G+ IL Sbjct: 6 QLLLEVLE-QIRPNLQADGGDMAYVGVTDEGVVQLELQGACAGCPMSSLTLSMGIERILK 64 Query: 178 HFVPEVKDIRTV 189 VP V + V Sbjct: 65 EHVPGVTRVEQV 76 >gi|84997065|ref|XP_953254.1| hypothetical protein [Theileria annulata strain Ankara] gi|65304250|emb|CAI76629.1| hypothetical protein, conserved [Theileria annulata] Length = 179 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 2/75 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVAN 174 V+ IK ++D R+RP + +DGGD+ F Y G V++ + GAC GC + TLK+ + Sbjct: 91 TVESIKLLIDKRIRPVIQQDGGDVFFVSYDPSTGYVYVRLSGACVGCIQSDITLKHMIQG 150 Query: 175 ILNHFVPEVKDIRTV 189 +L H++ E+ + V Sbjct: 151 MLCHYLEEITAVYNV 165 >gi|255536379|ref|YP_003096750.1| Nitrogen-fixing NifU, C-terminal [Flavobacteriaceae bacterium 3519-10] gi|255342575|gb|ACU08688.1| Nitrogen-fixing NifU, C-terminal [Flavobacteriaceae bacterium 3519-10] Length = 77 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 40/62 (64%) Query: 128 RVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 ++RP + +DGGDI R+ IV++ ++G C+GCP + T+K GV N + PE++++ Sbjct: 15 KIRPFLNKDGGDIELVDVRESIVYVKLQGNCNGCPMSFSTMKLGVENTIKQHAPEIQEVI 74 Query: 188 TV 189 V Sbjct: 75 NV 76 >gi|322379101|ref|ZP_08053503.1| conserved hypothetical nifU-like protein [Helicobacter suis HS1] gi|322380564|ref|ZP_08054730.1| NifU-like protein [Helicobacter suis HS5] gi|321147026|gb|EFX41760.1| NifU-like protein [Helicobacter suis HS5] gi|321148473|gb|EFX42971.1| conserved hypothetical nifU-like protein [Helicobacter suis HS1] Length = 89 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 43/66 (65%), Gaps = 1/66 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD + + ++ L+ ++RP + RDGGD+V G ++ V++S+ GAC GC S++ TLK+G+ Sbjct: 4 SDQELQKPVQRALE-KIRPVLLRDGGDVVLLGIKEAKVYVSLEGACKGCSSSANTLKFGI 62 Query: 173 ANILNH 178 L Sbjct: 63 ERCLQE 68 >gi|51892183|ref|YP_074874.1| NifU-like nitrogen fixation protein [Symbiobacterium thermophilum IAM 14863] gi|51855872|dbj|BAD40030.1| NifU-like nitrogen fixation protein [Symbiobacterium thermophilum IAM 14863] Length = 77 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ + +R++ LD +RPA+ DGG++ DG+ + M GAC GCP ++ TLK G+ Sbjct: 2 AEETLFERVERALDL-IRPAIRMDGGEVELVAVEDGVARIRMVGACGGCPMSTMTLKMGI 60 Query: 173 ANILNHFVPEVKDIRTV 189 + VPE++ + V Sbjct: 61 ERAVRQQVPEIRAVEAV 77 >gi|126698430|ref|YP_001087327.1| hypothetical protein CD0850 [Clostridium difficile 630] gi|254974469|ref|ZP_05270941.1| hypothetical protein CdifQC_04113 [Clostridium difficile QCD-66c26] gi|255091862|ref|ZP_05321340.1| hypothetical protein CdifC_04255 [Clostridium difficile CIP 107932] gi|255099963|ref|ZP_05328940.1| hypothetical protein CdifQCD-6_04105 [Clostridium difficile QCD-63q42] gi|255305852|ref|ZP_05350024.1| hypothetical protein CdifA_04615 [Clostridium difficile ATCC 43255] gi|255313596|ref|ZP_05355179.1| hypothetical protein CdifQCD-7_04573 [Clostridium difficile QCD-76w55] gi|255516280|ref|ZP_05383956.1| hypothetical protein CdifQCD-_04157 [Clostridium difficile QCD-97b34] gi|255649377|ref|ZP_05396279.1| hypothetical protein CdifQCD_04212 [Clostridium difficile QCD-37x79] gi|255654901|ref|ZP_05400310.1| hypothetical protein CdifQCD-2_04194 [Clostridium difficile QCD-23m63] gi|260682549|ref|YP_003213834.1| hypothetical protein CD196_0799 [Clostridium difficile CD196] gi|260686148|ref|YP_003217281.1| hypothetical protein CDR20291_0780 [Clostridium difficile R20291] gi|306519465|ref|ZP_07405812.1| hypothetical protein CdifQ_04665 [Clostridium difficile QCD-32g58] gi|115249867|emb|CAJ67684.1| putative NifU-like protein [Clostridium difficile] gi|260208712|emb|CBA61527.1| conserved hypothetical protein [Clostridium difficile CD196] gi|260212164|emb|CBE02822.1| conserved hypothetical protein [Clostridium difficile R20291] Length = 74 Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 47/69 (68%), Gaps = 1/69 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +++++VL+ +++P + RDGGD+ + +G+V + ++GACSGCP A+ T+K + N+L Sbjct: 3 EKVEKVLEEKIKPVLQRDGGDVELIDVNENGVVLVRLQGACSGCPGATMTIKAIIENVLV 62 Query: 178 HFVPEVKDI 186 VP V + Sbjct: 63 SEVPGVTQV 71 >gi|332798963|ref|YP_004460462.1| nitrogen-fixing NifU domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696698|gb|AEE91155.1| nitrogen-fixing NifU domain-containing protein [Tepidanaerobacter sp. Re1] Length = 74 Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 2/69 (2%) Query: 123 EVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 EV+ N++RP++ DGGD+ + GIV + + GAC GCP A+ TLK G+ L + Sbjct: 6 EVVLNKIRPSLQADGGDVELVDVDEVAGIVKVRLTGACGGCPFATMTLKNGIEEALKEEI 65 Query: 181 PEVKDIRTV 189 PEVK+++ V Sbjct: 66 PEVKEVQQV 74 >gi|242308908|ref|ZP_04808063.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239524572|gb|EEQ64438.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 81 Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 2/78 (2%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 F+ SD +++ ++ V++ +VRP + DGG++ +G V++ + GAC GCPS+S+TLK Sbjct: 2 FVFSDQELLKPVEMVIE-KVRPMLINDGGNVTLLKIENGKVYVRLEGACKGCPSSSQTLK 60 Query: 170 YGVANIL-NHFVPEVKDI 186 +G+ L N P+++ I Sbjct: 61 FGIERALKNEIHPDIELI 78 >gi|296449646|ref|ZP_06891419.1| NifU family protein [Clostridium difficile NAP08] gi|296878033|ref|ZP_06902051.1| NifU family protein [Clostridium difficile NAP07] gi|296261502|gb|EFH08324.1| NifU family protein [Clostridium difficile NAP08] gi|296430988|gb|EFH16817.1| NifU family protein [Clostridium difficile NAP07] Length = 95 Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 50/75 (66%), Gaps = 1/75 (1%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 A+ +++++VL+ +++P + RDGGD+ + +G+V + ++GACSGCP A+ T+K + N Sbjct: 21 AMREKVEKVLEEKIKPVLQRDGGDVELIDVNENGVVLVRLQGACSGCPGATMTIKAIIEN 80 Query: 175 ILNHFVPEVKDIRTV 189 +L VP V + V Sbjct: 81 VLVSEVPGVTQVLGV 95 >gi|149183085|ref|ZP_01861537.1| YutI [Bacillus sp. SG-1] gi|148849214|gb|EDL63412.1| YutI [Bacillus sp. SG-1] Length = 78 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + +V +++EVLD ++RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 2 TQQELVPQVQEVLD-KLRPFLLRDGGDCELVDIEDGIVKLRLLGACGSCPSSTITLKAGI 60 Query: 173 ANILNHFVPEVKDIRTV 189 L VP + ++ V Sbjct: 61 ERALLEEVPGIVEVEQV 77 >gi|70727016|ref|YP_253930.1| nitrogen fixation protein NifU [Staphylococcus haemolyticus JCSC1435] gi|223043066|ref|ZP_03613114.1| nitrogen fixation protein NifU [Staphylococcus capitis SK14] gi|228474235|ref|ZP_04058970.1| nitrogen fixation protein NifU [Staphylococcus hominis SK119] gi|239636541|ref|ZP_04677543.1| nitrogen fixation protein NifU [Staphylococcus warneri L37603] gi|242373103|ref|ZP_04818677.1| nitrogen fixation protein NifU [Staphylococcus epidermidis M23864:W1] gi|289551248|ref|YP_003472152.1| nitrogen-fixing NifU domain protein [Staphylococcus lugdunensis HKU09-01] gi|314933148|ref|ZP_07840513.1| NifU domain protein [Staphylococcus caprae C87] gi|314936844|ref|ZP_07844191.1| NifU domain protein [Staphylococcus hominis subsp. hominis C80] gi|315658750|ref|ZP_07911619.1| NifU domain protein [Staphylococcus lugdunensis M23590] gi|68447740|dbj|BAE05324.1| nitrogen fixation protein NifU [Staphylococcus haemolyticus JCSC1435] gi|222443920|gb|EEE50017.1| nitrogen fixation protein NifU [Staphylococcus capitis SK14] gi|228271594|gb|EEK12941.1| nitrogen fixation protein NifU [Staphylococcus hominis SK119] gi|239597896|gb|EEQ80391.1| nitrogen fixation protein NifU [Staphylococcus warneri L37603] gi|242349257|gb|EES40858.1| nitrogen fixation protein NifU [Staphylococcus epidermidis M23864:W1] gi|289180780|gb|ADC88025.1| nitrogen-fixing NifU domain protein [Staphylococcus lugdunensis HKU09-01] gi|313653298|gb|EFS17055.1| NifU domain protein [Staphylococcus caprae C87] gi|313655463|gb|EFS19208.1| NifU domain protein [Staphylococcus hominis subsp. hominis C80] gi|315496205|gb|EFU84531.1| NifU domain protein [Staphylococcus lugdunensis M23590] gi|330684919|gb|EGG96601.1| NifU-like protein [Staphylococcus epidermidis VCU121] Length = 80 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ + ++ EV++ R+RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 4 ENATMFDQVAEVIE-RLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGI 62 Query: 173 ANILNHFVPEVKDIRTV 189 L+ VP V ++ V Sbjct: 63 ERALHEEVPGVIEVEQV 79 >gi|297544959|ref|YP_003677261.1| nitrogen-fixing NifU domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842734|gb|ADH61250.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 73 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 47/69 (68%), Gaps = 2/69 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +R++EVL+ +RP++ DGGD+ + +DGIV + + GAC GCP A+ TLK G+ + Sbjct: 3 ERVEEVLE-LLRPSLQADGGDVELIDVTKDGIVKIRLTGACGGCPFATLTLKEGIERAIK 61 Query: 178 HFVPEVKDI 186 +PEVK++ Sbjct: 62 EEIPEVKEV 70 >gi|152977236|ref|YP_001376753.1| NifU domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025988|gb|ABS23758.1| nitrogen-fixing NifU domain protein [Bacillus cytotoxicus NVH 391-98] Length = 78 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +++ EVLD ++RP + RDGGD+ DGIV L + GAC CPS++ TLK G+ L Sbjct: 8 EQVLEVLD-KLRPFLLRDGGDVELVDIEDGIVKLRLMGACGSCPSSTITLKAGIERALLE 66 Query: 179 FVPEVKDIRTV 189 VP V ++ V Sbjct: 67 EVPGVIEVEQV 77 >gi|224126131|ref|XP_002329668.1| predicted protein [Populus trichocarpa] gi|222870549|gb|EEF07680.1| predicted protein [Populus trichocarpa] Length = 149 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++VLD VRP + RDGG++ +V L ++GAC CPS+S TLK G+ L Sbjct: 10 ENVEKVLDE-VRPGLMRDGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIETKLRD 68 Query: 179 FVPEVKDIRTV 189 +PE+ D+ + Sbjct: 69 KIPEIMDVEQI 79 >gi|154148473|ref|YP_001407292.1| NifU family protein [Campylobacter hominis ATCC BAA-381] gi|153804482|gb|ABS51489.1| NifU family protein [Campylobacter hominis ATCC BAA-381] Length = 88 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 45/65 (69%), Gaps = 1/65 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD +++ +++ LD +RP + +DGGD+ G ++ +V++ ++GAC GC ++++TLKYGV Sbjct: 5 SDDELIEPVQKSLD-LIRPMLQKDGGDLELLGIKNAVVYVRLKGACHGCSASAQTLKYGV 63 Query: 173 ANILN 177 L Sbjct: 64 ERQLK 68 >gi|52081716|ref|YP_080507.1| hypothetical protein BL02118 [Bacillus licheniformis ATCC 14580] gi|52787102|ref|YP_092931.1| YutI [Bacillus licheniformis ATCC 14580] gi|319647633|ref|ZP_08001851.1| nitrogen fixation protein [Bacillus sp. BT1B_CT2] gi|52004927|gb|AAU24869.1| Conserved protein YutI [Bacillus licheniformis ATCC 14580] gi|52349604|gb|AAU42238.1| YutI [Bacillus licheniformis ATCC 14580] gi|317389974|gb|EFV70783.1| nitrogen fixation protein [Bacillus sp. BT1B_CT2] Length = 79 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++++EVLD ++RP + RDGGD DGIV L + GAC CPS++ TLK G+ L Sbjct: 9 EQVQEVLD-KLRPFLLRDGGDCELVDVEDGIVKLRLLGACGSCPSSTITLKAGIERALLE 67 Query: 179 FVPEVKDIRTV 189 VP V ++ V Sbjct: 68 EVPGVIEVEQV 78 >gi|224126127|ref|XP_002329667.1| predicted protein [Populus trichocarpa] gi|222870548|gb|EEF07679.1| predicted protein [Populus trichocarpa] Length = 167 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++VLD VRP + RDGG++ +V L ++GAC CPS+S TLK G+ L Sbjct: 19 ENVEKVLDE-VRPGLMRDGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIETKLRD 77 Query: 179 FVPEVKDIRTV 189 +PE+ D+ + Sbjct: 78 KIPEIMDVEQI 88 >gi|58177342|pdb|1XHJ|A Chain A, Solution Structure Of The Staphylococcus Epidermidis Protein Se0630. Northest Structural Genomics Consortium Target Ser8 Length = 88 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 ++ EV++ R+RP + RDGGD DGIV L + GAC CPS++ TLK G+ L+ Sbjct: 11 QVAEVIE-RLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEE 69 Query: 180 VPEVKDIRTV 189 VP V ++ V Sbjct: 70 VPGVIEVEQV 79 >gi|224419202|ref|ZP_03657208.1| hypothetical protein HcanM9_08008 [Helicobacter canadensis MIT 98-5491] gi|253828131|ref|ZP_04871016.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313142706|ref|ZP_07804899.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|253511537|gb|EES90196.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131737|gb|EFR49354.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 81 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 50/75 (66%), Gaps = 2/75 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD +++ ++ V+D +VRP + DGG++ +G V++ + GAC GCPS+S+TLK+G+ Sbjct: 5 SDQKLLKPVEIVID-KVRPMLINDGGNVTLLKIENGKVYVRLEGACKGCPSSSKTLKFGI 63 Query: 173 ANIL-NHFVPEVKDI 186 + L N P+++ I Sbjct: 64 ESALKNEIHPDIELI 78 >gi|154343762|ref|XP_001567825.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134065159|emb|CAM40585.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 431 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 9/124 (7%) Query: 69 DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIES-DSAVVQRIKEVLDN 127 DW L+ V ++ +H SG+P + D + + E+ DS +V IKE++ Sbjct: 223 DWSELKFHVSALLTDHICSGNPHV------DPNAPNPHADTVAEAGDSEIVLMIKELVAT 276 Query: 128 RVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKD 185 +RP + DGGD+ F G+ G + + + GAC C ++ L + H++PEVK Sbjct: 277 TIRPQLQEDGGDLRFVGFDPVLGDMRVELLGACRTCKNSKTALVDLIERTTRHWIPEVKA 336 Query: 186 IRTV 189 ++ V Sbjct: 337 VKEV 340 >gi|118487917|gb|ABK95780.1| unknown [Populus trichocarpa] Length = 224 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++VLD VRP + RDGG++ +V L ++GAC CPS+S TLK G+ L Sbjct: 76 ENVEKVLDE-VRPGLMRDGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIETKLRD 134 Query: 179 FVPEVKDIRTV 189 +PE+ D+ + Sbjct: 135 KIPEIMDVEQI 145 >gi|27467548|ref|NP_764185.1| nitrogen fixation protein NifU [Staphylococcus epidermidis ATCC 12228] gi|57866465|ref|YP_188114.1| NifU domain-containing protein [Staphylococcus epidermidis RP62A] gi|242242226|ref|ZP_04796671.1| NifU family protein [Staphylococcus epidermidis W23144] gi|251810309|ref|ZP_04824782.1| NifU family protein [Staphylococcus epidermidis BCM-HMP0060] gi|293368312|ref|ZP_06614940.1| NifU domain protein [Staphylococcus epidermidis M23864:W2(grey)] gi|27315092|gb|AAO04227.1|AE016746_17 nitrogen fixation protein NifU [Staphylococcus epidermidis ATCC 12228] gi|57637123|gb|AAW53911.1| NifU domain protein [Staphylococcus epidermidis RP62A] gi|242234321|gb|EES36633.1| NifU family protein [Staphylococcus epidermidis W23144] gi|251806191|gb|EES58848.1| NifU family protein [Staphylococcus epidermidis BCM-HMP0060] gi|291317559|gb|EFE57977.1| NifU domain protein [Staphylococcus epidermidis M23864:W2(grey)] gi|319401786|gb|EFV89994.1| nifU-like domain protein [Staphylococcus epidermidis FRI909] gi|329726827|gb|EGG63287.1| NifU-like protein [Staphylococcus epidermidis VCU144] gi|329736812|gb|EGG73077.1| NifU-like protein [Staphylococcus epidermidis VCU028] gi|329737604|gb|EGG73850.1| NifU-like protein [Staphylococcus epidermidis VCU045] Length = 80 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 ++ EV++ R+RP + RDGGD DGIV L + GAC CPS++ TLK G+ L+ Sbjct: 11 QVAEVIE-RLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEE 69 Query: 180 VPEVKDIRTV 189 VP V ++ V Sbjct: 70 VPGVIEVEQV 79 >gi|164688813|ref|ZP_02212841.1| hypothetical protein CLOBAR_02460 [Clostridium bartlettii DSM 16795] gi|164602289|gb|EDQ95754.1| hypothetical protein CLOBAR_02460 [Clostridium bartlettii DSM 16795] Length = 73 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 2/69 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +++ VLD +VRP + RDGGD+ + + DG+V + ++GACSGCP A+ TLK + N+L Sbjct: 3 EQVAAVLD-KVRPVLQRDGGDVELVEVSDDGVVLVRLKGACSGCPGATMTLKAVIENLLV 61 Query: 178 HFVPEVKDI 186 VP V + Sbjct: 62 KEVPGVTRV 70 >gi|156088839|ref|XP_001611826.1| NifU-like domain containing protein [Babesia bovis] gi|154799080|gb|EDO08258.1| NifU-like domain containing protein [Babesia bovis] Length = 123 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 2/76 (2%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASET 167 + E+D VV IK ++D R+ P V +DGGD+ F Y G V++ + GAC GC + T Sbjct: 26 YSEADLEVVDSIKLLIDKRIAPVVRQDGGDVSFISYDPETGFVYVRLSGACVGCAQSDIT 85 Query: 168 LKYGVANILNHFVPEV 183 LK+ + L H++ +V Sbjct: 86 LKHMIQGTLCHYLDDV 101 >gi|167465184|ref|ZP_02330273.1| nitrogen-fixing NifU domain protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384547|ref|ZP_08058227.1| iron-sulfur scaffold-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150602|gb|EFX44079.1| iron-sulfur scaffold-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 82 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 4/77 (5%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 DS + + EVLD ++RP + RDGGD+ DGIV L + GAC CPS++ TLK G+ Sbjct: 6 QDSTMYDEVLEVLD-KLRPFLQRDGGDVELVDVEDGIVKLRLMGACGSCPSSTITLKAGI 64 Query: 173 ANILNHFVPEVKDIRTV 189 L V EV+ I+ V Sbjct: 65 ERAL---VEEVEGIQEV 78 >gi|152993863|ref|YP_001359584.1| hypothetical protein SUN_2287 [Sulfurovum sp. NBC37-1] gi|151425724|dbj|BAF73227.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 92 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 2/72 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +D + +K+V++ +VRP++ DGGDI +DG+V++ ++GAC GC SA T+K+GV Sbjct: 5 TDEELEPAVKDVIE-KVRPSIKLDGGDIELVDIKDGVVYVQLQGACVGCGSAGTTIKFGV 63 Query: 173 ANILNHFV-PEV 183 L + PE+ Sbjct: 64 ERQLKTLIHPEI 75 >gi|297583473|ref|YP_003699253.1| nitrogen-fixing NifU domain-containing protein [Bacillus selenitireducens MLS10] gi|297141930|gb|ADH98687.1| nitrogen-fixing NifU domain protein [Bacillus selenitireducens MLS10] Length = 78 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +++EVLD ++RP + RDGGD+ DG+V + + GAC CPS++ TLK G+ L Sbjct: 9 QVQEVLD-KLRPFLLRDGGDVELVDVEDGVVKVRLMGACGSCPSSTITLKAGIERALLEE 67 Query: 180 VPEVKDIRTV 189 VP V ++ V Sbjct: 68 VPGVTELEQV 77 >gi|298528227|ref|ZP_07015631.1| nitrogen-fixing NifU domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511879|gb|EFI35781.1| nitrogen-fixing NifU domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 73 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 49/72 (68%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++++EVL+ ++RP++ DGGD+ + + D +V + ++GAC GCP + TLK G+ ++ Sbjct: 3 EQVQEVLE-KIRPSLQADGGDVELVEVTEDNVVKVQLQGACKGCPMSQMTLKNGIERLIM 61 Query: 178 HFVPEVKDIRTV 189 +P++K + +V Sbjct: 62 QELPQIKSVESV 73 >gi|20808161|ref|NP_623332.1| thioredoxin domain-containing protein [Thermoanaerobacter tengcongensis MB4] gi|20516751|gb|AAM24936.1| Thioredoxin-like proteins and domains [Thermoanaerobacter tengcongensis MB4] Length = 73 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +R++E+L N ++P++ DGGD+ + DG+V + + GAC GCP A+ TLK G+ + Sbjct: 3 ERVEEIL-NLIKPSLQADGGDVELVDVTEDGVVKVKLTGACGGCPFATLTLKEGIERAIK 61 Query: 178 HFVPEVKDIRTV 189 +PEVK++ V Sbjct: 62 EEIPEVKEVIAV 73 >gi|162448199|ref|YP_001621331.1| NifU-like domain-containing protein [Acholeplasma laidlawii PG-8A] gi|161986306|gb|ABX81955.1| NifU-like domain protein [Acholeplasma laidlawii PG-8A] Length = 77 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 37/63 (58%) Query: 127 NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 RVRP + RDGGDI DGIV++ M GAC GC + TLK G+ ++ VP + + Sbjct: 15 KRVRPYIQRDGGDIELVNIEDGIVYVKMGGACDGCAAIDITLKQGIETMMLENVPGIIAV 74 Query: 187 RTV 189 TV Sbjct: 75 VTV 77 >gi|311031755|ref|ZP_07709845.1| NifU-like protein [Bacillus sp. m3-13] Length = 78 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 S+ + +++EVLD ++RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 2 SNPEINAQVQEVLD-KLRPFLLRDGGDCELVDVEDGIVKLRLLGACGSCPSSTITLKAGI 60 Query: 173 ANILNHFVPEVKDIRTV 189 L VP + ++ V Sbjct: 61 ERALLEEVPGIIEVEQV 77 >gi|126652035|ref|ZP_01724224.1| nitrogen fixation protein (NifU protein) [Bacillus sp. B14905] gi|169826170|ref|YP_001696328.1| NifU-like protein [Lysinibacillus sphaericus C3-41] gi|299536342|ref|ZP_07049655.1| NifU-like protein [Lysinibacillus fusiformis ZC1] gi|126591125|gb|EAZ85235.1| nitrogen fixation protein (NifU protein) [Bacillus sp. B14905] gi|168990658|gb|ACA38198.1| NifU-like protein [Lysinibacillus sphaericus C3-41] gi|298728328|gb|EFI68890.1| NifU-like protein [Lysinibacillus fusiformis ZC1] Length = 78 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +++ + +++EVLD ++RP + RDGGD DG+V L + GAC CPS++ TLK G+ Sbjct: 2 AEATINDQVQEVLD-KLRPFLLRDGGDCELVDVEDGVVKLRLLGACGSCPSSTITLKAGI 60 Query: 173 ANILNHFVPEVKDIRTV 189 L VP + ++ V Sbjct: 61 ERALLEEVPGIVEVEQV 77 >gi|261409236|ref|YP_003245477.1| nitrogen-fixing NifU domain-containing protein [Paenibacillus sp. Y412MC10] gi|315649387|ref|ZP_07902475.1| nitrogen-fixing NifU domain protein [Paenibacillus vortex V453] gi|329926903|ref|ZP_08281306.1| NifU-like protein [Paenibacillus sp. HGF5] gi|261285699|gb|ACX67670.1| nitrogen-fixing NifU domain protein [Paenibacillus sp. Y412MC10] gi|315275163|gb|EFU38533.1| nitrogen-fixing NifU domain protein [Paenibacillus vortex V453] gi|328938890|gb|EGG35263.1| NifU-like protein [Paenibacillus sp. HGF5] Length = 81 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 4/77 (5%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + + V + EVLD ++RP + RDGGD+ DGIV L + GAC CPS++ TLK G+ Sbjct: 5 TQTTVYDEVAEVLD-KLRPFLQRDGGDVELVDVEDGIVKLKLMGACGSCPSSTITLKAGI 63 Query: 173 ANILNHFVPEVKDIRTV 189 L V EV+ I+ V Sbjct: 64 ERAL---VEEVEGIQEV 77 >gi|328954876|ref|YP_004372209.1| nitrogen-fixing NifU domain protein [Coriobacterium glomerans PW2] gi|328455200|gb|AEB06394.1| nitrogen-fixing NifU domain protein [Coriobacterium glomerans PW2] Length = 92 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILN 177 + +K VLD +RP + DGGD+ F G D G+V L ++GAC+GCP +S TL G+ +L Sbjct: 6 EHLKRVLD-EIRPNLQADGGDLTFVGVDDDGVVQLELQGACAGCPMSSMTLSMGIERVLK 64 Query: 178 HFVPEVKDIRTV 189 V V + V Sbjct: 65 EHVAGVTRVEAV 76 >gi|289578725|ref|YP_003477352.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter italicus Ab9] gi|289528438|gb|ADD02790.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter italicus Ab9] Length = 73 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 2/69 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +R++EVL+ +RP++ DGGD+ + DGIV + + GAC GCP A+ TLK G+ + Sbjct: 3 KRVEEVLE-LLRPSLQADGGDVELIDVTEDGIVKIRLTGACGGCPFATLTLKEGIERAIK 61 Query: 178 HFVPEVKDI 186 +PEVK++ Sbjct: 62 EEIPEVKEV 70 >gi|167037171|ref|YP_001664749.1| NifU domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040690|ref|YP_001663675.1| NifU domain-containing protein [Thermoanaerobacter sp. X514] gi|256751269|ref|ZP_05492149.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|300914731|ref|ZP_07132047.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter sp. X561] gi|307724035|ref|YP_003903786.1| nitrogen-fixing NifU domain-containing protein [Thermoanaerobacter sp. X513] gi|320115589|ref|YP_004185748.1| nitrogen-fixing NifU domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854930|gb|ABY93339.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter sp. X514] gi|166856005|gb|ABY94413.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749824|gb|EEU62848.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|300889666|gb|EFK84812.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter sp. X561] gi|307581096|gb|ADN54495.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter sp. X513] gi|319928680|gb|ADV79365.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 73 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 2/69 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +R++EVL+ +RP++ DGGD+ + DGIV + + GAC GCP A+ TLK G+ + Sbjct: 3 ERVEEVLE-LLRPSLQADGGDVELIDVTEDGIVKVRLTGACGGCPFATLTLKEGIERAIK 61 Query: 178 HFVPEVKDI 186 +PEVK++ Sbjct: 62 EEIPEVKEV 70 >gi|218961333|ref|YP_001741108.1| NifU-like domain protein [Candidatus Cloacamonas acidaminovorans] gi|167729990|emb|CAO80902.1| NifU-like domain protein [Candidatus Cloacamonas acidaminovorans] Length = 75 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 46/69 (66%), Gaps = 2/69 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++I+ +L +VRP++ DGGD+ R D ++ + ++G C+GCP A+ TLK G+ ++ Sbjct: 5 EKIESIL-AKVRPSIQADGGDVELINIREDNVIEVRLKGTCNGCPMATLTLKAGIERLIK 63 Query: 178 HFVPEVKDI 186 +PEVK++ Sbjct: 64 EEIPEVKEV 72 >gi|326494232|dbj|BAJ90385.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 224 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH-F 179 + VLD+ VRP + DGGD+ DG+V L + GACS CPS++ T+ G+ +L F Sbjct: 81 VDRVLDD-VRPYLISDGGDVAVVSVEDGVVSLRLEGACSSCPSSTTTMNMGIERVLKEKF 139 Query: 180 VPEVKDIRTV 189 +KDIR V Sbjct: 140 GDAIKDIRQV 149 >gi|289523173|ref|ZP_06440027.1| NifU domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503716|gb|EFD24880.1| NifU domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 89 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG--IVFLSMRGACSGCPSASETLKYGV 172 + V + I +V++ +RPA+ GGDI F GY + V + + GAC GCP A ETL++ V Sbjct: 11 TQVQKDITDVIEKDIRPALVSHGGDIEFVGYDEAEKKVMVRLTGACGGCPFARETLRFQV 70 Query: 173 ANILNHFVPEV 183 N+L +P++ Sbjct: 71 ENVLKDRLPDI 81 >gi|229916513|ref|YP_002885159.1| nitrogen-fixing NifU domain protein [Exiguobacterium sp. AT1b] gi|229467942|gb|ACQ69714.1| nitrogen-fixing NifU domain protein [Exiguobacterium sp. AT1b] Length = 75 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +++EVLD ++RP + RDGGD+ +GIV L + GAC CPS++ TLK G+ L Sbjct: 6 QVQEVLD-KLRPFLLRDGGDVELVDVEEGIVKLRLMGACGSCPSSTITLKAGIERALIEE 64 Query: 180 VPEVKDIRTV 189 VP + ++ V Sbjct: 65 VPGIVEVEQV 74 >gi|23099811|ref|NP_693277.1| nitrogen fixation protein [Oceanobacillus iheyensis HTE831] gi|22778042|dbj|BAC14312.1| nitrogen fixation protein (NifU protein) [Oceanobacillus iheyensis HTE831] Length = 74 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++++EVL N++RP + RDGGD+ + +G+V L + GAC CPS++ TLK G+ L Sbjct: 3 EQVQEVL-NKLRPFLLRDGGDVELIDVDEEGVVLLRLMGACGNCPSSTITLKAGIERALM 61 Query: 178 HFVPEVKDIRTV 189 VP V++I V Sbjct: 62 AEVPGVREIEQV 73 >gi|254458634|ref|ZP_05072058.1| NifU family protein [Campylobacterales bacterium GD 1] gi|207084400|gb|EDZ61688.1| NifU family protein [Campylobacterales bacterium GD 1] Length = 91 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 37/50 (74%) Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +V N++RP++A DGGDI F ++G V++ ++GAC GC S+ TLKYGV Sbjct: 14 QVAINKIRPSLALDGGDIDFITVKNGNVYVQLKGACIGCASSGSTLKYGV 63 >gi|228993673|ref|ZP_04153580.1| hypothetical protein bpmyx0001_43990 [Bacillus pseudomycoides DSM 12442] gi|228999709|ref|ZP_04159285.1| hypothetical protein bmyco0003_42630 [Bacillus mycoides Rock3-17] gi|229007266|ref|ZP_04164867.1| hypothetical protein bmyco0002_41480 [Bacillus mycoides Rock1-4] gi|229087461|ref|ZP_04219595.1| hypothetical protein bcere0022_40270 [Bacillus cereus Rock3-44] gi|228695883|gb|EEL48734.1| hypothetical protein bcere0022_40270 [Bacillus cereus Rock3-44] gi|228754020|gb|EEM03457.1| hypothetical protein bmyco0002_41480 [Bacillus mycoides Rock1-4] gi|228760071|gb|EEM09041.1| hypothetical protein bmyco0003_42630 [Bacillus mycoides Rock3-17] gi|228766102|gb|EEM14749.1| hypothetical protein bpmyx0001_43990 [Bacillus pseudomycoides DSM 12442] Length = 78 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +++ EVLD ++RP + RDGGD+ +GIV L + GAC CPS++ TLK G+ L Sbjct: 8 EQVLEVLD-KLRPFLLRDGGDVELVDIEEGIVKLRLMGACGSCPSSTITLKAGIERALLE 66 Query: 179 FVPEVKDIRTV 189 VP V ++ V Sbjct: 67 EVPGVIEVEQV 77 >gi|229032593|ref|ZP_04188558.1| hypothetical protein bcere0028_46300 [Bacillus cereus AH1271] gi|229135778|ref|ZP_04264548.1| hypothetical protein bcere0014_46610 [Bacillus cereus BDRD-ST196] gi|228647644|gb|EEL03709.1| hypothetical protein bcere0014_46610 [Bacillus cereus BDRD-ST196] gi|228728778|gb|EEL79789.1| hypothetical protein bcere0028_46300 [Bacillus cereus AH1271] Length = 78 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +++ EVLD ++RP + RDGGD+ +GIV L + GAC CPS++ TLK G+ L Sbjct: 8 EQVLEVLD-KLRPFLLRDGGDVELVDIEEGIVKLRLMGACGSCPSSTITLKAGIERALLE 66 Query: 179 FVPEVKDIRTV 189 VP V ++ V Sbjct: 67 EVPGVIEVEQV 77 >gi|57651628|ref|YP_185809.1| NifU domain-containing protein [Staphylococcus aureus subsp. aureus COL] gi|57285814|gb|AAW37908.1| NifU domain protein [Staphylococcus aureus subsp. aureus COL] Length = 73 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 ++ EV++ R+RP + RDGGD DGIV L + GAC CPS++ TLK G+ L+ Sbjct: 4 QVAEVIE-RLRPFLLRDGGDCSLIDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEE 62 Query: 180 VPEVKDIRTV 189 VP V ++ V Sbjct: 63 VPGVIEVEQV 72 >gi|30022992|ref|NP_834623.1| NifU protein [Bacillus cereus ATCC 14579] gi|30264992|ref|NP_847369.1| NifU domain-containing protein [Bacillus anthracis str. Ames] gi|42784132|ref|NP_981379.1| NifU domain-containing protein [Bacillus cereus ATCC 10987] gi|47530492|ref|YP_021841.1| NifU domain-containing protein [Bacillus anthracis str. 'Ames Ancestor'] gi|47566983|ref|ZP_00237700.1| NifU protein-related protein [Bacillus cereus G9241] gi|49187811|ref|YP_031064.1| NifU domain-containing protein [Bacillus anthracis str. Sterne] gi|49481022|ref|YP_038969.1| NifU domain-containing protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140580|ref|YP_086250.1| NifU domain-containing protein [Bacillus cereus E33L] gi|75758910|ref|ZP_00739021.1| NifU protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118480036|ref|YP_897187.1| NifU-like domain-containing protein [Bacillus thuringiensis str. Al Hakam] gi|163942665|ref|YP_001647549.1| NifU domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|165870953|ref|ZP_02215605.1| nifU domain protein [Bacillus anthracis str. A0488] gi|167634861|ref|ZP_02393179.1| nifU domain protein [Bacillus anthracis str. A0442] gi|167639907|ref|ZP_02398175.1| nifU domain protein [Bacillus anthracis str. A0193] gi|170685656|ref|ZP_02876879.1| nifU domain protein [Bacillus anthracis str. A0465] gi|170706993|ref|ZP_02897450.1| nifU domain protein [Bacillus anthracis str. A0389] gi|177652329|ref|ZP_02934832.1| nifU domain protein [Bacillus anthracis str. A0174] gi|190567150|ref|ZP_03020065.1| nifU domain protein [Bacillus anthracis Tsiankovskii-I] gi|196033148|ref|ZP_03100561.1| nifU domain protein [Bacillus cereus W] gi|196040592|ref|ZP_03107892.1| nifU domain protein [Bacillus cereus NVH0597-99] gi|196043939|ref|ZP_03111176.1| nifU domain protein [Bacillus cereus 03BB108] gi|206970391|ref|ZP_03231344.1| nifU domain protein [Bacillus cereus AH1134] gi|206976476|ref|ZP_03237383.1| nifU domain protein [Bacillus cereus H3081.97] gi|217962417|ref|YP_002340989.1| nifU domain protein [Bacillus cereus AH187] gi|218235090|ref|YP_002369752.1| nifU domain protein [Bacillus cereus B4264] gi|218900105|ref|YP_002448516.1| nifU domain protein [Bacillus cereus G9842] gi|218906144|ref|YP_002453978.1| nifU domain protein [Bacillus cereus AH820] gi|222098402|ref|YP_002532460.1| nitrogen-fixing nifu domain protein [Bacillus cereus Q1] gi|225866921|ref|YP_002752299.1| nifU domain protein [Bacillus cereus 03BB102] gi|227817723|ref|YP_002817732.1| nifU domain protein [Bacillus anthracis str. CDC 684] gi|228903455|ref|ZP_04067581.1| hypothetical protein bthur0014_46170 [Bacillus thuringiensis IBL 4222] gi|228910790|ref|ZP_04074599.1| hypothetical protein bthur0013_49320 [Bacillus thuringiensis IBL 200] gi|228917578|ref|ZP_04081122.1| hypothetical protein bthur0012_47840 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228923687|ref|ZP_04086965.1| hypothetical protein bthur0011_46620 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228929976|ref|ZP_04092987.1| hypothetical protein bthur0010_46580 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936248|ref|ZP_04099047.1| hypothetical protein bthur0009_46860 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228942118|ref|ZP_04104658.1| hypothetical protein bthur0008_47490 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228948675|ref|ZP_04110953.1| hypothetical protein bthur0007_47990 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228955216|ref|ZP_04117224.1| hypothetical protein bthur0006_45740 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961200|ref|ZP_04122821.1| hypothetical protein bthur0005_46480 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228968061|ref|ZP_04129067.1| hypothetical protein bthur0004_48450 [Bacillus thuringiensis serovar sotto str. T04001] gi|228975048|ref|ZP_04135607.1| hypothetical protein bthur0003_47960 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981687|ref|ZP_04141982.1| hypothetical protein bthur0002_48460 [Bacillus thuringiensis Bt407] gi|228988194|ref|ZP_04148291.1| hypothetical protein bthur0001_48520 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229014137|ref|ZP_04171258.1| hypothetical protein bmyco0001_45420 [Bacillus mycoides DSM 2048] gi|229020189|ref|ZP_04176962.1| hypothetical protein bcere0030_46810 [Bacillus cereus AH1273] gi|229026415|ref|ZP_04182772.1| hypothetical protein bcere0029_46920 [Bacillus cereus AH1272] gi|229049643|ref|ZP_04194200.1| hypothetical protein bcere0027_46010 [Bacillus cereus AH676] gi|229062619|ref|ZP_04199928.1| hypothetical protein bcere0026_46850 [Bacillus cereus AH603] gi|229072441|ref|ZP_04205643.1| hypothetical protein bcere0025_46020 [Bacillus cereus F65185] gi|229076327|ref|ZP_04209292.1| hypothetical protein bcere0024_46310 [Bacillus cereus Rock4-18] gi|229082198|ref|ZP_04214662.1| hypothetical protein bcere0023_48160 [Bacillus cereus Rock4-2] gi|229094055|ref|ZP_04225139.1| hypothetical protein bcere0021_47700 [Bacillus cereus Rock3-42] gi|229099409|ref|ZP_04230339.1| hypothetical protein bcere0020_46280 [Bacillus cereus Rock3-29] gi|229105568|ref|ZP_04236202.1| hypothetical protein bcere0019_46970 [Bacillus cereus Rock3-28] gi|229112395|ref|ZP_04241933.1| hypothetical protein bcere0018_46350 [Bacillus cereus Rock1-15] gi|229118422|ref|ZP_04247776.1| hypothetical protein bcere0017_46890 [Bacillus cereus Rock1-3] gi|229124488|ref|ZP_04253673.1| hypothetical protein bcere0016_47720 [Bacillus cereus 95/8201] gi|229130213|ref|ZP_04259172.1| hypothetical protein bcere0015_46490 [Bacillus cereus BDRD-Cer4] gi|229141670|ref|ZP_04270200.1| hypothetical protein bcere0013_47600 [Bacillus cereus BDRD-ST26] gi|229147497|ref|ZP_04275844.1| hypothetical protein bcere0012_46260 [Bacillus cereus BDRD-ST24] gi|229153141|ref|ZP_04281320.1| hypothetical protein bcere0011_46710 [Bacillus cereus m1550] gi|229158547|ref|ZP_04286606.1| hypothetical protein bcere0010_47200 [Bacillus cereus ATCC 4342] gi|229163931|ref|ZP_04291871.1| hypothetical protein bcere0009_46940 [Bacillus cereus R309803] gi|229169674|ref|ZP_04297374.1| hypothetical protein bcere0007_46180 [Bacillus cereus AH621] gi|229175651|ref|ZP_04303159.1| hypothetical protein bcere0006_47280 [Bacillus cereus MM3] gi|229181250|ref|ZP_04308580.1| hypothetical protein bcere0005_45920 [Bacillus cereus 172560W] gi|229187187|ref|ZP_04314332.1| hypothetical protein bcere0004_47230 [Bacillus cereus BGSC 6E1] gi|229193231|ref|ZP_04320182.1| hypothetical protein bcere0002_48780 [Bacillus cereus ATCC 10876] gi|229199099|ref|ZP_04325782.1| hypothetical protein bcere0001_46120 [Bacillus cereus m1293] gi|229604077|ref|YP_002869195.1| nifU domain protein [Bacillus anthracis str. A0248] gi|254687285|ref|ZP_05151142.1| nifU domain protein [Bacillus anthracis str. CNEVA-9066] gi|254725297|ref|ZP_05187080.1| nifU domain protein [Bacillus anthracis str. A1055] gi|254735378|ref|ZP_05193086.1| nifU domain protein [Bacillus anthracis str. Western North America USA6153] gi|254740645|ref|ZP_05198336.1| nifU domain protein [Bacillus anthracis str. Kruger B] gi|254753093|ref|ZP_05205129.1| nifU domain protein [Bacillus anthracis str. Vollum] gi|254761435|ref|ZP_05213456.1| nifU domain protein [Bacillus anthracis str. Australia 94] gi|296505392|ref|YP_003667092.1| NifU protein [Bacillus thuringiensis BMB171] gi|301056437|ref|YP_003794648.1| nitrogen-fixing NifU domain-containing protein [Bacillus anthracis CI] gi|29898552|gb|AAP11824.1| NifU protein [Bacillus cereus ATCC 14579] gi|30259669|gb|AAP28855.1| nifU domain protein [Bacillus anthracis str. Ames] gi|42740063|gb|AAS43987.1| nifU domain protein [Bacillus cereus ATCC 10987] gi|47505640|gb|AAT34316.1| nifU domain protein [Bacillus anthracis str. 'Ames Ancestor'] gi|47556301|gb|EAL14635.1| NifU protein-related protein [Bacillus cereus G9241] gi|49181738|gb|AAT57114.1| nifU domain protein [Bacillus anthracis str. Sterne] gi|49332578|gb|AAT63224.1| nitrogen-fixing NifU domain protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974049|gb|AAU15599.1| nitrogen-fixing NifU domain protein [Bacillus cereus E33L] gi|74493584|gb|EAO56689.1| NifU protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118419261|gb|ABK87680.1| NifU-like domain protein [Bacillus thuringiensis str. Al Hakam] gi|163864862|gb|ABY45921.1| nitrogen-fixing NifU domain protein [Bacillus weihenstephanensis KBAB4] gi|164713462|gb|EDR18987.1| nifU domain protein [Bacillus anthracis str. A0488] gi|167511988|gb|EDR87366.1| nifU domain protein [Bacillus anthracis str. A0193] gi|167529611|gb|EDR92360.1| nifU domain protein [Bacillus anthracis str. A0442] gi|170128096|gb|EDS96966.1| nifU domain protein [Bacillus anthracis str. A0389] gi|170670120|gb|EDT20860.1| nifU domain protein [Bacillus anthracis str. A0465] gi|172082335|gb|EDT67401.1| nifU domain protein [Bacillus anthracis str. A0174] gi|190561654|gb|EDV15624.1| nifU domain protein [Bacillus anthracis Tsiankovskii-I] gi|195994577|gb|EDX58532.1| nifU domain protein [Bacillus cereus W] gi|196025275|gb|EDX63945.1| nifU domain protein [Bacillus cereus 03BB108] gi|196028724|gb|EDX67331.1| nifU domain protein [Bacillus cereus NVH0597-99] gi|206734968|gb|EDZ52137.1| nifU domain protein [Bacillus cereus AH1134] gi|206745400|gb|EDZ56800.1| nifU domain protein [Bacillus cereus H3081.97] gi|217063374|gb|ACJ77624.1| nifU domain protein [Bacillus cereus AH187] gi|218163047|gb|ACK63039.1| nifU domain protein [Bacillus cereus B4264] gi|218538404|gb|ACK90802.1| nifU domain protein [Bacillus cereus AH820] gi|218541315|gb|ACK93709.1| nifU domain protein [Bacillus cereus G9842] gi|221242461|gb|ACM15171.1| nitrogen-fixing NifU domain protein [Bacillus cereus Q1] gi|225790034|gb|ACO30251.1| nifU domain protein [Bacillus cereus 03BB102] gi|227002453|gb|ACP12196.1| nifU domain protein [Bacillus anthracis str. CDC 684] gi|228584370|gb|EEK42505.1| hypothetical protein bcere0001_46120 [Bacillus cereus m1293] gi|228590208|gb|EEK48076.1| hypothetical protein bcere0002_48780 [Bacillus cereus ATCC 10876] gi|228596197|gb|EEK53872.1| hypothetical protein bcere0004_47230 [Bacillus cereus BGSC 6E1] gi|228602143|gb|EEK59634.1| hypothetical protein bcere0005_45920 [Bacillus cereus 172560W] gi|228607792|gb|EEK65106.1| hypothetical protein bcere0006_47280 [Bacillus cereus MM3] gi|228613713|gb|EEK70838.1| hypothetical protein bcere0007_46180 [Bacillus cereus AH621] gi|228619552|gb|EEK76438.1| hypothetical protein bcere0009_46940 [Bacillus cereus R309803] gi|228624861|gb|EEK81629.1| hypothetical protein bcere0010_47200 [Bacillus cereus ATCC 4342] gi|228630240|gb|EEK86890.1| hypothetical protein bcere0011_46710 [Bacillus cereus m1550] gi|228635923|gb|EEK92406.1| hypothetical protein bcere0012_46260 [Bacillus cereus BDRD-ST24] gi|228641738|gb|EEK98039.1| hypothetical protein bcere0013_47600 [Bacillus cereus BDRD-ST26] gi|228653146|gb|EEL09025.1| hypothetical protein bcere0015_46490 [Bacillus cereus BDRD-Cer4] gi|228658828|gb|EEL14483.1| hypothetical protein bcere0016_47720 [Bacillus cereus 95/8201] gi|228664992|gb|EEL20480.1| hypothetical protein bcere0017_46890 [Bacillus cereus Rock1-3] gi|228671043|gb|EEL26349.1| hypothetical protein bcere0018_46350 [Bacillus cereus Rock1-15] gi|228677838|gb|EEL32081.1| hypothetical protein bcere0019_46970 [Bacillus cereus Rock3-28] gi|228684033|gb|EEL37981.1| hypothetical protein bcere0020_46280 [Bacillus cereus Rock3-29] gi|228689267|gb|EEL43086.1| hypothetical protein bcere0021_47700 [Bacillus cereus Rock3-42] gi|228701116|gb|EEL53638.1| hypothetical protein bcere0023_48160 [Bacillus cereus Rock4-2] gi|228706762|gb|EEL58970.1| hypothetical protein bcere0024_46310 [Bacillus cereus Rock4-18] gi|228710417|gb|EEL62390.1| hypothetical protein bcere0025_46020 [Bacillus cereus F65185] gi|228716589|gb|EEL68286.1| hypothetical protein bcere0026_46850 [Bacillus cereus AH603] gi|228722556|gb|EEL73944.1| hypothetical protein bcere0027_46010 [Bacillus cereus AH676] gi|228734878|gb|EEL85516.1| hypothetical protein bcere0029_46920 [Bacillus cereus AH1272] gi|228741085|gb|EEL91310.1| hypothetical protein bcere0030_46810 [Bacillus cereus AH1273] gi|228747091|gb|EEL96973.1| hypothetical protein bmyco0001_45420 [Bacillus mycoides DSM 2048] gi|228771491|gb|EEM19960.1| hypothetical protein bthur0001_48520 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228777799|gb|EEM26071.1| hypothetical protein bthur0002_48460 [Bacillus thuringiensis Bt407] gi|228784569|gb|EEM32589.1| hypothetical protein bthur0003_47960 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228791616|gb|EEM39212.1| hypothetical protein bthur0004_48450 [Bacillus thuringiensis serovar sotto str. T04001] gi|228798494|gb|EEM45486.1| hypothetical protein bthur0005_46480 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804349|gb|EEM50960.1| hypothetical protein bthur0006_45740 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228810982|gb|EEM57325.1| hypothetical protein bthur0007_47990 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228817452|gb|EEM63537.1| hypothetical protein bthur0008_47490 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228823364|gb|EEM69197.1| hypothetical protein bthur0009_46860 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829656|gb|EEM75282.1| hypothetical protein bthur0010_46580 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228835816|gb|EEM81179.1| hypothetical protein bthur0011_46620 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228842058|gb|EEM87161.1| hypothetical protein bthur0012_47840 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228848741|gb|EEM93586.1| hypothetical protein bthur0013_49320 [Bacillus thuringiensis IBL 200] gi|228856185|gb|EEN00719.1| hypothetical protein bthur0014_46170 [Bacillus thuringiensis IBL 4222] gi|229268485|gb|ACQ50122.1| nifU domain protein [Bacillus anthracis str. A0248] gi|296326444|gb|ADH09372.1| NifU protein [Bacillus thuringiensis BMB171] gi|300378606|gb|ADK07510.1| nitrogen-fixing NifU domain protein [Bacillus cereus biovar anthracis str. CI] gi|324328882|gb|ADY24142.1| nitrogen-fixing NifU domain-containing protein [Bacillus thuringiensis serovar finitimus YBT-020] gi|326942769|gb|AEA18665.1| NifU protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 78 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +++ EVLD ++RP + RDGGD+ +GIV L + GAC CPS++ TLK G+ L Sbjct: 8 EQVLEVLD-KLRPFLLRDGGDVELVDIEEGIVKLRLMGACGSCPSSTITLKAGIERALLE 66 Query: 179 FVPEVKDIRTV 189 VP V ++ V Sbjct: 67 EVPGVIEVEQV 77 >gi|254455102|ref|ZP_05068538.1| NifU-like domain protein [Octadecabacter antarcticus 238] gi|198263804|gb|EDY88075.1| NifU-like domain protein [Octadecabacter antarcticus 238] Length = 419 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 14/178 (7%) Query: 10 NPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKDQ-Y 68 +P TL+FI V ++ + +A + +PLA +F+I G+ V I V + Sbjct: 18 DPQTLRFILEAPVQDSTSVCYDDA--SADAPLARALFAISGVQRVEVDGASIYVSRSTDV 75 Query: 69 DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNR 128 DW L+ P+ I + ++ + L + + G+ D+ ++ + E+LD Sbjct: 76 DWSALKAPIAVAIRD-------VLDSEALPLGQRSEAPKGE----DALLLLAVAELLDCE 124 Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 PA+A GG + + + V+L M G C GC ++S TL+ G+ +L +P + +I Sbjct: 125 ANPAIASHGGSVAVERVENSDVYLRMSGGCQGCAASSATLRQGIETMLRAGLPAIGEI 182 >gi|78224272|ref|YP_386019.1| nitrogen-fixing NifU-like [Geobacter metallireducens GS-15] gi|78195527|gb|ABB33294.1| Nitrogen-fixing NifU-like protein [Geobacter metallireducens GS-15] Length = 74 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 +++ +K+VLD VRPA+ DGGD+ + + DG+V + + GAC CP ++ TLK G+ Sbjct: 1 MLEEVKKVLDT-VRPALQADGGDVELVEVTEDGVVKVKLVGACGHCPMSTMTLKMGIERT 59 Query: 176 LNHFVPEVKDIRTV 189 L VP VK++ +V Sbjct: 60 LKEKVPGVKEVISV 73 >gi|302389972|ref|YP_003825793.1| nitrogen-fixing NifU domain protein [Thermosediminibacter oceani DSM 16646] gi|302200600|gb|ADL08170.1| nitrogen-fixing NifU domain protein [Thermosediminibacter oceani DSM 16646] Length = 74 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 49/73 (67%), Gaps = 3/73 (4%) Query: 119 QRIKEVLDNRVRPAVARDGGDI--VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++++EVL N++RP++ DGGD+ V GIV + + G+C GCP ++ TLK G+ +L Sbjct: 3 EKVQEVL-NKIRPSLQADGGDVELVDVDEEKGIVKVRLTGSCFGCPFSTLTLKNGIEQVL 61 Query: 177 NHFVPEVKDIRTV 189 VP VK++++V Sbjct: 62 KEEVPGVKEVQSV 74 >gi|269792680|ref|YP_003317584.1| nitrogen-fixing NifU domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100315|gb|ACZ19302.1| nitrogen-fixing NifU domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 76 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++IK++++ +RPA+ GGDI FKG+ G+V +++ GAC CP A ETL+ V ++ Sbjct: 3 EQIKKLIEEEIRPALQSHGGDIDFKGFDQASGVVTVALTGACGTCPFAQETLRVQVEQVI 62 Query: 177 NHFVPEVKDIR 187 P V ++ Sbjct: 63 RRSFPSVTAVK 73 >gi|304317418|ref|YP_003852563.1| nitrogen-fixing NifU domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778920|gb|ADL69479.1| nitrogen-fixing NifU domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 73 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 2/69 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +R++EVL N +RP++ DGGD+ + DG+V + + GAC GCP A TLK G+ + Sbjct: 3 ERVEEVL-NLLRPSLQADGGDVELIDVTDDGVVQVKLTGACGGCPFAVMTLKEGIERAIK 61 Query: 178 HFVPEVKDI 186 +PEVK++ Sbjct: 62 EELPEVKEV 70 >gi|154413784|ref|XP_001579921.1| NifU-like domain containing protein [Trichomonas vaginalis G3] gi|121914133|gb|EAY18935.1| NifU-like domain containing protein [Trichomonas vaginalis G3] Length = 112 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 96 GLGDMKLDDMGSGDFIESDS-AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSM 154 G G+ + E+D+ + QR+ ++++ +VRP + +D GDI ++G + + + Sbjct: 11 GFGNFFIRSFAKEAVKETDADKLFQRVNKIIEEKVRPFIKQDHGDIELVDIKNGCMIVQL 70 Query: 155 RGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 GAC GC + TL GV + +PE+ +IR Sbjct: 71 EGACEGCGCKNTTLYNGVLGTVQEEIPEITNIR 103 >gi|237752984|ref|ZP_04583464.1| NifU family protein [Helicobacter winghamensis ATCC BAA-430] gi|229375251|gb|EEO25342.1| NifU family protein [Helicobacter winghamensis ATCC BAA-430] Length = 81 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 44/65 (67%), Gaps = 1/65 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD+ +++ ++ +D +VRP + +DGG++ +G V++ + GAC GCPS+++TLK+G+ Sbjct: 5 SDTELLKPVEASID-KVRPMLIKDGGNVTLIKIENGKVYVRLEGACKGCPSSTQTLKFGI 63 Query: 173 ANILN 177 L Sbjct: 64 ERTLK 68 >gi|317154501|ref|YP_004122549.1| nitrogen-fixing NifU domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944752|gb|ADU63803.1| nitrogen-fixing NifU domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 74 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILN 177 +++ +VLD +VRPA+ DGGD+ D GIV + + GAC GCP + TLK G+ I+ Sbjct: 3 EKVMKVLD-KVRPALQGDGGDVELVDITDKGIVQVRLTGACKGCPMSQMTLKNGIERIIL 61 Query: 178 HFVPEVKDIRTV 189 +PE+K + V Sbjct: 62 KEIPEIKGVEAV 73 >gi|198414946|ref|XP_002131248.1| PREDICTED: similar to NFU1 iron-sulfur cluster scaffold homolog (HIRA-interacting protein 5) [Ciona intestinalis] Length = 201 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 12/182 (6%) Query: 16 FIPGQVVL---VEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKD----QY 68 F PG VL E I + + SPL +I I GI SV I V K+ Sbjct: 3 FHPGCPVLHNLNEQKIKYHSRHPCYHSPLVRQIMKIDGIESVTLFTKHIHVQKNTDTLSP 62 Query: 69 DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA--VVQRIKEVLD 126 W ++P ++ ++ F S P + + SG+ + + I ++++ Sbjct: 63 QWSSIKPIIVATLINFFASQLPTTTHHQSKRLHYHK-ESGECVAYGKLDDIEYVIDDLIN 121 Query: 127 NRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVK 184 +R+RP V +GGD+++K + +G V++ + G+C P A+ + +L + VP V Sbjct: 122 SRIRPTVQDEGGDVIYKDFNRGNGTVYVLLLGSCLYTPKATNAITSATLLLLQYHVPCVT 181 Query: 185 DI 186 + Sbjct: 182 SV 183 >gi|323488633|ref|ZP_08093875.1| NifU-like protein [Planococcus donghaensis MPA1U2] gi|323397651|gb|EGA90455.1| NifU-like protein [Planococcus donghaensis MPA1U2] Length = 78 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +++ + ++ EVLD ++RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 2 TEALLEDQVMEVLD-KLRPFLLRDGGDCELVDIEDGIVKLRLLGACGSCPSSTITLKAGI 60 Query: 173 ANILNHFVPEVKDIRTV 189 L VP + ++ V Sbjct: 61 ERALVEEVPGIVEVEQV 77 >gi|317472464|ref|ZP_07931786.1| NifU domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316900037|gb|EFV22029.1| NifU domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 99 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 45/70 (64%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +++ I++VL+ VRP + G++ Y++GI+ + + G CSGCPSA+ T + +A + Sbjct: 1 MLREIEKVLEEDVRPYLLEHEGNVRISEYKEGILKVRLTGQCSGCPSAALTTEELIAEAV 60 Query: 177 NHFVPEVKDI 186 +PEVKD+ Sbjct: 61 KKKIPEVKDV 70 >gi|65316943|ref|ZP_00389902.1| COG0694: Thioredoxin-like proteins and domains [Bacillus anthracis str. A2012] Length = 95 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +++ EVLD ++RP + RDGGD+ +GIV L + GAC CPS++ TLK G+ L Sbjct: 8 EQVLEVLD-KLRPFLLRDGGDVELVDIEEGIVKLRLMGACGSCPSSTITLKAGIERALLE 66 Query: 179 FVPEVKDIRTV 189 VP V ++ V Sbjct: 67 EVPGVIEVEQV 77 >gi|218289813|ref|ZP_03494013.1| nitrogen-fixing NifU domain protein [Alicyclobacillus acidocaldarius LAA1] gi|258510957|ref|YP_003184391.1| nitrogen-fixing NifU domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218240104|gb|EED07289.1| nitrogen-fixing NifU domain protein [Alicyclobacillus acidocaldarius LAA1] gi|257477683|gb|ACV58002.1| nitrogen-fixing NifU domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 81 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 3/72 (4%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILN 177 RI+E +++ +R A+ +DGGD+ F Y D V++S++GAC GCP++ TLK G+ + Sbjct: 11 RIREAIES-IREAIQQDGGDVEFVSYDDLSKTVYVSLQGACVGCPASVMTLKMGIERAVK 69 Query: 178 HFVPEVKDIRTV 189 P+V+ + V Sbjct: 70 KVAPDVEYVEAV 81 >gi|313206297|ref|YP_004045474.1| nitrogen-fixing nifu domain protein [Riemerella anatipestifer DSM 15868] gi|312445613|gb|ADQ81968.1| nitrogen-fixing NifU domain protein [Riemerella anatipestifer DSM 15868] gi|315023020|gb|EFT36033.1| Nitrogen-fixing NifU, C-terminal [Riemerella anatipestifer RA-YM] gi|325336260|gb|ADZ12534.1| Thioredoxin-like protein [Riemerella anatipestifer RA-GD] Length = 78 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 +E++S V R++ L++ +RP + +DGGDI D +V++ + G CSGCP + T+K Sbjct: 1 MENNSLEV-RVENALES-IRPFLNKDGGDIELIKIEDTVVYVKLLGNCSGCPVSFSTMKL 58 Query: 171 GVANILNHFVPEVKDIRTV 189 GV N + VPE+ + V Sbjct: 59 GVENTVKEKVPEITRVENV 77 >gi|73663148|ref|YP_301929.1| hypothetical protein SSP1839 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495663|dbj|BAE18984.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 80 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 ++ EV++ ++RP + RDGGD DGIV L + GAC CPS++ TLK G+ L+ Sbjct: 11 QVAEVIE-KLRPFLLRDGGDCSLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEE 69 Query: 180 VPEVKDIRTV 189 VP V ++ V Sbjct: 70 VPGVIEVEQV 79 >gi|163784585|ref|ZP_02179431.1| nifU-like domain protein [Hydrogenivirga sp. 128-5-R1-1] gi|159880146|gb|EDP73804.1| nifU-like domain protein [Hydrogenivirga sp. 128-5-R1-1] Length = 89 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 4/81 (4%) Query: 112 ESDSAVVQRIK--EVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETL 168 E++ A + R K EVL+ ++RPA+ DGGD+ DG V++ + GACSGC + TL Sbjct: 3 ENNQATIDRAKVEEVLE-KIRPALRFDGGDVELVDIGEDGTVYVRLMGACSGCAMSLMTL 61 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ L +PEVK++ V Sbjct: 62 KGGIEQRLKQEIPEVKEVVAV 82 >gi|258591187|emb|CBE67482.1| conserved protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 197 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 4/86 (4%) Query: 101 KLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSG 160 K+D+ SG + + +A VQR V+D R+ P VA GG + +DGI +++ G C G Sbjct: 91 KIDNPNSG-WTDPVAAAVQR---VIDARINPGVAAHGGYVTLLDVKDGIAYITFGGGCHG 146 Query: 161 CPSASETLKYGVANILNHFVPEVKDI 186 C A TLK GVA + VPE+ + Sbjct: 147 CGMADVTLKQGVAVEIQKAVPEIHQV 172 >gi|150016970|ref|YP_001309224.1| NifU domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149903435|gb|ABR34268.1| nitrogen-fixing NifU domain protein [Clostridium beijerinckii NCIMB 8052] Length = 93 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++ I V++ +++P +A GDI +G+ ++ + GACSGCPSA T++ ++ +L Sbjct: 5 MIDEINNVINTKIKPLLAEHNGDIELVEVNNGVAYVKLLGACSGCPSARFTMEELISCVL 64 Query: 177 NHFVPEVKDIRTV 189 +PE+KD++ V Sbjct: 65 KE-IPEIKDVQLV 76 >gi|330837803|ref|YP_004412444.1| nitrogen-fixing NifU domain-containing protein [Spirochaeta coccoides DSM 17374] gi|329749706|gb|AEC03062.1| nitrogen-fixing NifU domain-containing protein [Spirochaeta coccoides DSM 17374] Length = 78 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 1/62 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++IKE ++ +RPA+ DGGDI F D V + + GAC+GCP A TLK GV L+H Sbjct: 3 EQIKEAIEA-IRPAIQNDGGDIEFVQLDDNKVIVRLTGACAGCPMAKMTLKGGVERYLHH 61 Query: 179 FV 180 V Sbjct: 62 AV 63 >gi|212640233|ref|YP_002316753.1| thioredoxin-like protein [Anoxybacillus flavithermus WK1] gi|212561713|gb|ACJ34768.1| Thioredoxin-like protein [Anoxybacillus flavithermus WK1] Length = 80 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +D + Q+++EVLD ++RP + RDGGD DG+V L + GAC CPS++ TLK G+ Sbjct: 4 ADQDIKQQVQEVLD-KLRPFLLRDGGDCELVDVEDGVVKLRLLGACGSCPSSTITLKAGI 62 Query: 173 ANIL 176 L Sbjct: 63 ERAL 66 >gi|308070638|ref|YP_003872243.1| thioredoxin-like protein [Paenibacillus polymyxa E681] gi|305859917|gb|ADM71705.1| Thioredoxin-like protein [Paenibacillus polymyxa E681] Length = 81 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 2/79 (2%) Query: 113 SDSAVVQRIKEVLD--NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 S++ VQ EV D +++RP + RDGGD+ DGIV L + GAC CPS++ TLK Sbjct: 2 SETQSVQMYDEVADVLDKLRPFLQRDGGDVELVDVEDGIVKLKLVGACGSCPSSTITLKA 61 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ L V V+++ V Sbjct: 62 GIERALLEEVDGVQEVVQV 80 >gi|332296888|ref|YP_004438810.1| nitrogen-fixing NifU domain-containing protein [Treponema brennaborense DSM 12168] gi|332179991|gb|AEE15679.1| nitrogen-fixing NifU domain-containing protein [Treponema brennaborense DSM 12168] Length = 76 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLKYGVANILNH 178 ++K+ LD ++RP + DGGD+ F G VF+ + GAC CP A+ TLK GV L Sbjct: 6 KVKDALD-KIRPQLQADGGDLEFVSMEAGGKVFVKLTGACGNCPMATMTLKQGVERFLKD 64 Query: 179 FVPEVKDI 186 +PEV ++ Sbjct: 65 TIPEVTEV 72 >gi|301168132|emb|CBW27720.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 85 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 45/70 (64%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++++I+ + D +VRPA+A GG++ +G +F+ + G C GC S+S TLK G+ ++ Sbjct: 1 MIRKIENLFDEQVRPALAAHGGNVEVIDIDNGKLFVKLSGGCQGCSSSSATLKDGIERMV 60 Query: 177 NHFVPEVKDI 186 PE++++ Sbjct: 61 KQNFPEIEEV 70 >gi|78776531|ref|YP_392846.1| nitrogen-fixing NifU-like protein [Sulfurimonas denitrificans DSM 1251] gi|78497071|gb|ABB43611.1| Nitrogen-fixing NifU-like protein [Sulfurimonas denitrificans DSM 1251] Length = 91 Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 2/72 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +D ++ ++ V+D +VRP++A D GDI F ++ V++ ++GAC GC S+ TLKYGV Sbjct: 5 TDEELMNPVRNVID-KVRPSLALDSGDISFITVKNSKVYIQLKGACVGCASSGTTLKYGV 63 Query: 173 ANILNHFV-PEV 183 L + PE+ Sbjct: 64 ERQLKMDIHPEI 75 >gi|302392635|ref|YP_003828455.1| nitrogen-fixing NifU domain protein [Acetohalobium arabaticum DSM 5501] gi|302204712|gb|ADL13390.1| nitrogen-fixing NifU domain protein [Acetohalobium arabaticum DSM 5501] Length = 72 Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 39/63 (61%) Query: 127 NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +++RP++ DGG + +G+V + + GAC GCP + TLK G+ +L +PEV+ + Sbjct: 10 DKIRPSLEADGGGVELIDVEEGVVKVKLTGACGGCPMSQMTLKNGIERVLKEEIPEVEKV 69 Query: 187 RTV 189 +V Sbjct: 70 ESV 72 >gi|113476915|ref|YP_722976.1| nitrogen-fixing NifU-like protein [Trichodesmium erythraeum IMS101] gi|110167963|gb|ABG52503.1| nitrogen-fixing NifU-like [Trichodesmium erythraeum IMS101] Length = 80 Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 42/67 (62%) Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 E++ + +RP +A DGG++ IV L ++GACS CPS++ TLK G+ L +PE Sbjct: 13 EIVLDELRPYLAADGGNVELVDIEGPIVKLRLQGACSSCPSSTMTLKMGIERKLREEIPE 72 Query: 183 VKDIRTV 189 + ++ +V Sbjct: 73 IAEVESV 79 >gi|288574803|ref|ZP_06393160.1| nitrogen-fixing NifU domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570544|gb|EFC92101.1| nitrogen-fixing NifU domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 77 Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVA 173 +++ RI EV+D +RPA+ GGD+ + G++ ++GAC CP A ETL+ V Sbjct: 2 SLIDRINEVVDKSIRPALQSHGGDVEVVSFDEESGVISARLQGACGTCPFAQETLRMQVE 61 Query: 174 NILNHFVPEVKDI 186 +L +PEV + Sbjct: 62 AVLKREIPEVSSV 74 >gi|327439123|dbj|BAK15488.1| thioredoxin-like protein [Solibacillus silvestris StLB046] Length = 78 Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +++EVLD ++RP + RDGGD +GIV L + GAC CPS++ TLK G+ L Sbjct: 9 QVQEVLD-KLRPFLLRDGGDCELVDIEEGIVKLRLLGACGSCPSSTITLKAGIERALLEE 67 Query: 180 VPEVKDIRTV 189 VP + ++ V Sbjct: 68 VPGIVEVEQV 77 >gi|258405531|ref|YP_003198273.1| nitrogen-fixing NifU domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257797758|gb|ACV68695.1| nitrogen-fixing NifU domain protein [Desulfohalobium retbaense DSM 5692] Length = 73 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLKYGVANILN 177 ++I+ LD +VRP + DGGDI D IV + ++GAC GCP + TLK GV +L Sbjct: 3 EKIEAALD-KVRPVLQADGGDIELVEITDNNIVRVRLQGACKGCPMSQMTLKNGVERVLL 61 Query: 178 HFVPEVKDIRTV 189 VPE+K + +V Sbjct: 62 KEVPEIKGVESV 73 >gi|195952454|ref|YP_002120744.1| nitrogen-fixing NifU domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932066|gb|ACG56766.1| nitrogen-fixing NifU domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 87 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANI 175 V+ ++E LD +RPA+ DGGDI DG V + + GACSGC ++ TLK GV Sbjct: 5 TVEEVEEALDE-IRPALRFDGGDIELVSIEEDGTVLVRLMGACSGCGMSTLTLKAGVERA 63 Query: 176 LNHFVPEVKDIRTV 189 L P++K+++ V Sbjct: 64 LKQKFPDIKEVKDV 77 >gi|300776481|ref|ZP_07086339.1| nitrogen fixation protein NifU [Chryseobacterium gleum ATCC 35910] gi|300501991|gb|EFK33131.1| nitrogen fixation protein NifU [Chryseobacterium gleum ATCC 35910] Length = 82 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V R+ E L++ +RP + +DGGDI +D VF+ + G CSGC TLK GV N + Sbjct: 11 VTRVMEALES-IRPFLNKDGGDIELIDVKDNQVFVKLLGNCSGCSLNFSTLKLGVENTIK 69 Query: 178 HFVPEVKDIRTV 189 PE++ + V Sbjct: 70 QHAPEIEKVINV 81 >gi|154414462|ref|XP_001580258.1| NifU-like domain containing protein [Trichomonas vaginalis G3] gi|121914474|gb|EAY19272.1| NifU-like domain containing protein [Trichomonas vaginalis G3] Length = 103 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 37/68 (54%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 F ++ ++ V++ RVRPA+ DGGDI K DGIV + M G C GCPS TL Sbjct: 18 FAKASKEFFDKVNAVIEERVRPALLSDGGDITLKDITDGIVTVQMFGHCVGCPSKQITLN 77 Query: 170 YGVANILN 177 + + L Sbjct: 78 SRILDCLQ 85 >gi|56421496|ref|YP_148814.1| nitrogen fixation NifU protein [Geobacillus kaustophilus HTA426] gi|138896548|ref|YP_001127001.1| nitrogen fixation protein NifU [Geobacillus thermodenitrificans NG80-2] gi|56381338|dbj|BAD77246.1| nitrogen fixation protein (NifU protein) [Geobacillus kaustophilus HTA426] gi|134268061|gb|ABO68256.1| Nitrogen fixation protein NifU [Geobacillus thermodenitrificans NG80-2] Length = 80 Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +D + ++++EVLD ++RP + RDGGD DG+V L + GAC CPS++ TLK G+ Sbjct: 4 TDQEIKEQVQEVLD-KLRPFLLRDGGDCELVDVEDGVVKLRLLGACGSCPSSTITLKAGI 62 Query: 173 ANIL 176 L Sbjct: 63 ERAL 66 >gi|319760689|ref|YP_004124627.1| Fe/S biogenesis protein nfuA [Candidatus Blochmannia vafer str. BVAF] gi|318039403|gb|ADV33953.1| Fe/S biogenesis protein nfuA [Candidatus Blochmannia vafer str. BVAF] Length = 202 Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 I ++S++ RIK V+ ++ P +A GG + + K DG+ L G C+GC A T+K Sbjct: 112 ITNNSSLTDRIKYVITQQINPQLAMHGGSVSLIKVNTDGMAILQFHGGCNGCSMALYTIK 171 Query: 170 YGVANILNHFVPEVKDI 186 G+ L F PE+K + Sbjct: 172 EGIEKTLKKFFPELKGV 188 >gi|261420397|ref|YP_003254079.1| nitrogen-fixing NifU domain protein [Geobacillus sp. Y412MC61] gi|297528899|ref|YP_003670174.1| nitrogen-fixing NifU domain protein [Geobacillus sp. C56-T3] gi|319768064|ref|YP_004133565.1| nitrogen-fixing NifU domain protein [Geobacillus sp. Y412MC52] gi|261376854|gb|ACX79597.1| nitrogen-fixing NifU domain protein [Geobacillus sp. Y412MC61] gi|297252151|gb|ADI25597.1| nitrogen-fixing NifU domain protein [Geobacillus sp. C56-T3] gi|317112930|gb|ADU95422.1| nitrogen-fixing NifU domain protein [Geobacillus sp. Y412MC52] Length = 78 Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +D + ++++EVLD ++RP + RDGGD DG+V L + GAC CPS++ TLK G+ Sbjct: 2 TDQEIKEQVQEVLD-KLRPFLLRDGGDCELVDVEDGVVKLRLLGACGSCPSSTITLKAGI 60 Query: 173 ANIL 176 L Sbjct: 61 ERAL 64 >gi|239828215|ref|YP_002950839.1| nitrogen-fixing NifU domain protein [Geobacillus sp. WCH70] gi|239808508|gb|ACS25573.1| nitrogen-fixing NifU domain protein [Geobacillus sp. WCH70] Length = 78 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +D + ++++EVLD ++RP + RDGGD DG+V L + GAC CPS++ TLK G+ Sbjct: 2 TDQEIKEQVQEVLD-KLRPFLLRDGGDCELIDVEDGVVKLRLLGACGSCPSSTITLKAGI 60 Query: 173 ANIL 176 L Sbjct: 61 ERAL 64 >gi|323699074|ref|ZP_08110986.1| nitrogen-fixing NifU domain protein [Desulfovibrio sp. ND132] gi|323459006|gb|EGB14871.1| nitrogen-fixing NifU domain protein [Desulfovibrio desulfuricans ND132] Length = 73 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILN 177 ++++ VLD +VRP + DGGD+ D GIV + + GAC GCP + TLK G+ I+ Sbjct: 3 KKVEAVLD-KVRPMLQGDGGDVELVEVTDNGIVKVRLTGACKGCPMSQMTLKNGIERIIL 61 Query: 178 HFVPEVKDIRTV 189 +PEVK + V Sbjct: 62 KEIPEVKGVEAV 73 >gi|326534082|dbj|BAJ89391.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 216 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD VRP++ RDGG++ +V L ++GAC CPS++ TLK G+ + L Sbjct: 68 ENVERVLDE-VRPSLMRDGGNVALHEIDGLVVVLMLQGACGSCPSSTMTLKMGIESRLRD 126 Query: 179 FVPEVKDIRTV 189 +PE+ ++ + Sbjct: 127 KIPEILEVEQI 137 >gi|332982274|ref|YP_004463715.1| nitrogen-fixing NifU domain-containing protein [Mahella australiensis 50-1 BON] gi|332699952|gb|AEE96893.1| nitrogen-fixing NifU domain protein [Mahella australiensis 50-1 BON] Length = 73 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%) Query: 127 NRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKD 185 ++RPA+ DGGD+ + DG+V + + GAC CP A TLK G+ L VPEVK+ Sbjct: 10 EKIRPALKADGGDVELVDVASDGVVKVKLTGACGACPFALMTLKQGIEETLKESVPEVKE 69 Query: 186 IRTV 189 + V Sbjct: 70 VVAV 73 >gi|160915579|ref|ZP_02077790.1| hypothetical protein EUBDOL_01587 [Eubacterium dolichum DSM 3991] gi|158432699|gb|EDP10988.1| hypothetical protein EUBDOL_01587 [Eubacterium dolichum DSM 3991] Length = 76 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 1/59 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++ IK V+ N++RP + RDGGD+ F + +GIV + + GAC GC S ET+ G+ IL Sbjct: 5 IEEIKHVI-NKIRPYIQRDGGDVEFVSFDNGIVAVRLLGACIGCASVDETISGGIEAIL 62 >gi|39995588|ref|NP_951539.1| NifU-like domain-containing protein [Geobacter sulfurreducens PCA] gi|39982351|gb|AAR33812.1| NifU-like domain protein [Geobacter sulfurreducens PCA] gi|298504607|gb|ADI83330.1| thioredoxin/NifU-like domain protein [Geobacter sulfurreducens KN400] Length = 74 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 +++ +K+VLD VRPA+ DGGD+ + + DG+V + + GAC CP ++ TLK G+ Sbjct: 1 MLEDVKKVLD-LVRPALQADGGDVELVEVTEDGVVKVKLVGACGHCPMSTMTLKMGIERT 59 Query: 176 LNHFVPEVKDIRTV 189 L VP VK++ +V Sbjct: 60 LKEKVPGVKEVVSV 73 >gi|83816071|ref|YP_445990.1| hypothetical protein SRU_1878 [Salinibacter ruber DSM 13855] gi|294507901|ref|YP_003571959.1| conserved hypothetical protein containing thioredoxin-like domain [Salinibacter ruber M8] gi|83757465|gb|ABC45578.1| conserved hypothetical protein [Salinibacter ruber DSM 13855] gi|294344229|emb|CBH25007.1| conserved hypothetical protein containing thioredoxin-like domain [Salinibacter ruber M8] Length = 142 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 Q E TPNP +LKF + G + +S+A EA PLA R+F + G+ V+ F+ Sbjct: 55 TQAESTPNPNSLKFTTDDGPFLSGGVAAYSSADEAAEDPLARRLFGVSGVDDVFITPQFV 114 Query: 62 TVGK-DQYDWEHLRPPVLGMIMEHF 85 TV K DW ++P V ++ EH Sbjct: 115 TVSKAPSVDWGSVKPDVETILAEHL 139 >gi|90021654|ref|YP_527481.1| hypothetical protein Sde_2009 [Saccharophagus degradans 2-40] gi|89951254|gb|ABD81269.1| HesB/YadR/YfhF [Saccharophagus degradans 2-40] Length = 203 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASETLK 169 I DS + RI VL N V P +A GG++ + D + + L G C GC + TLK Sbjct: 113 ITEDSTIEDRINYVLYNEVNPGLAAHGGNVSLEAITDDMHIVLKFGGGCQGCSAVDMTLK 172 Query: 170 YGVANILNHFVPEVKDIR 187 GV L VPE+K +R Sbjct: 173 QGVEKTLMERVPEIKGVR 190 >gi|134300123|ref|YP_001113619.1| NifU domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052823|gb|ABO50794.1| nitrogen-fixing NifU domain protein [Desulfotomaculum reducens MI-1] Length = 74 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 2/69 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILN 177 +++KE L+ +VRP + RDGGD+ F + G+V + +RGAC CP A TLK G+ +L Sbjct: 3 EQVKEALE-QVRPFLQRDGGDVEFVDCDEKGVVKVKLRGACGSCPGALYTLKNGIERVLK 61 Query: 178 HFVPEVKDI 186 VP V ++ Sbjct: 62 QQVPGVTEV 70 >gi|57233705|ref|YP_182326.1| NifU-like protein [Dehalococcoides ethenogenes 195] gi|57224153|gb|AAW39210.1| NifU-like protein [Dehalococcoides ethenogenes 195] Length = 72 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 49/70 (70%), Gaps = 1/70 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++++++ VLD ++RPA+ DGG++ DG+V + + GAC+GCP ++ TLK G+ IL Sbjct: 1 MLEKVEAVLD-KIRPALEADGGNVELVEVVDGVVKVKLVGACAGCPMSTMTLKNGIEKIL 59 Query: 177 NHFVPEVKDI 186 +PEVK++ Sbjct: 60 KREIPEVKEV 69 >gi|257064210|ref|YP_003143882.1| thioredoxin-like protein [Slackia heliotrinireducens DSM 20476] gi|256791863|gb|ACV22533.1| thioredoxin-like protein [Slackia heliotrinireducens DSM 20476] Length = 76 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +RI+ VL+ +RP++ DGGD+ DG+V + + GAC+GCP + TL GV +L Sbjct: 6 ERIERVLE-LIRPSLQADGGDLELVDVGDDGVVTVHLTGACNGCPLSQLTLANGVRRVLK 64 Query: 178 HFVPEVKDIRTV 189 VP V D+R V Sbjct: 65 ERVPSVTDVRAV 76 >gi|319650406|ref|ZP_08004549.1| nitrogen-fixing NifU-like protein [Bacillus sp. 2_A_57_CT2] gi|317397967|gb|EFV78662.1| nitrogen-fixing NifU-like protein [Bacillus sp. 2_A_57_CT2] Length = 79 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 1/62 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + + ++++EVLD ++RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 5 TTMTEQVQEVLD-KLRPFLLRDGGDCELVDVEDGIVKLRLLGACGSCPSSTITLKAGIER 63 Query: 175 IL 176 L Sbjct: 64 AL 65 >gi|77919925|ref|YP_357740.1| NifU-like protein [Pelobacter carbinolicus DSM 2380] gi|77546008|gb|ABA89570.1| NifU-like protein [Pelobacter carbinolicus DSM 2380] Length = 103 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 9/87 (10%) Query: 101 KLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACS 159 +LDD G E ++ E+LD ++RP++ DGGD+ + DG+V + ++GAC Sbjct: 20 ELDDKGRCQMKE-------QVLEILD-KIRPSLQADGGDVELVDISEDGVVKVRLKGACG 71 Query: 160 GCPSASETLKYGVANILNHFVPEVKDI 186 CP ++ TLK G+ L VP VK++ Sbjct: 72 SCPMSTMTLKMGIERTLKAQVPGVKEV 98 >gi|57168801|ref|ZP_00367932.1| nifU protein homolog Cj1639 [Campylobacter coli RM2228] gi|305432457|ref|ZP_07401619.1| NifU family protein [Campylobacter coli JV20] gi|57019848|gb|EAL56531.1| nifU protein homolog Cj1639 [Campylobacter coli RM2228] gi|304444496|gb|EFM37147.1| NifU family protein [Campylobacter coli JV20] Length = 90 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD ++ +K LD + P + RDGG + F G ++G+V++ + GAC GC S+ TLKYG+ Sbjct: 5 SDEELINPVKASLDKSM-PMLERDGGGLEFLGIKNGVVYVHLIGACKGCASSGTTLKYGL 63 Query: 173 ANILN 177 L Sbjct: 64 ERQLK 68 >gi|328953813|ref|YP_004371147.1| nitrogen-fixing NifU domain-containing protein [Desulfobacca acetoxidans DSM 11109] gi|328454137|gb|AEB09966.1| nitrogen-fixing NifU domain-containing protein [Desulfobacca acetoxidans DSM 11109] Length = 72 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 128 RVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 ++RP + RDGGD+ G+V + + GAC GCP + TLK G+ +L VP + + Sbjct: 11 KIRPMLQRDGGDVELVEVEHGVVKVKLTGACKGCPMSQMTLKNGIERLLKQEVPGIVSVE 70 Query: 188 TV 189 +V Sbjct: 71 SV 72 >gi|307266231|ref|ZP_07547773.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|326390563|ref|ZP_08212119.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter ethanolicus JW 200] gi|306918761|gb|EFN48993.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|325993388|gb|EGD51824.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 73 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 46/69 (66%), Gaps = 2/69 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +R++EVL+ +RP++ DGG++ + DGIV + + GAC GCP A+ TLK G+ + Sbjct: 3 ERVEEVLE-LLRPSLQADGGNVELIDVTEDGIVKVRLTGACGGCPFATLTLKEGIERAIK 61 Query: 178 HFVPEVKDI 186 +PEV+++ Sbjct: 62 EEIPEVREV 70 >gi|4558563|gb|AAD22656.1|AC007138_20 putative NifU-like metallocluster assembly factor [Arabidopsis thaliana] gi|7268578|emb|CAB80687.1| putative NifU-like metallocluster assembly factor [Arabidopsis thaliana] Length = 174 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 Q + VL++ VRP + DGG++ DG+V L ++GAC+ CPS+S T+ G+ +L Sbjct: 87 QNVDLVLED-VRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVLKE 145 Query: 179 -FVPEVKDIRTV 189 F +KDIR V Sbjct: 146 KFGDALKDIRQV 157 >gi|123434403|ref|XP_001308803.1| NifU-like domain containing protein [Trichomonas vaginalis G3] gi|121890501|gb|EAX95873.1| NifU-like domain containing protein [Trichomonas vaginalis G3] Length = 114 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 45/71 (63%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + +R+ ++++ +VRP + +GGDI ++G + +S+ GAC+ C S + TL GV + Sbjct: 34 LFKRVNKIIEEKVRPFIRSEGGDIELVDIKNGCMIVSLEGACTHCGSKNNTLYNGVLGAV 93 Query: 177 NHFVPEVKDIR 187 +PE+++IR Sbjct: 94 QDEIPEIENIR 104 >gi|296272309|ref|YP_003654940.1| nitrogen-fixing NifU domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296096483|gb|ADG92433.1| nitrogen-fixing NifU domain protein [Arcobacter nitrofigilis DSM 7299] Length = 92 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 38/60 (63%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD + +K ++DN++ P +A+DGG + ++G VF+ + GAC GC ++ TLKY V Sbjct: 5 SDEDLFPVVKNIIDNKIAPMLAQDGGAMTLLDVKNGKVFVQLNGACVGCSASGSTLKYVV 64 >gi|241890053|ref|ZP_04777351.1| Fe/S biogenesis protein NfuA [Gemella haemolysans ATCC 10379] gi|241863675|gb|EER68059.1| Fe/S biogenesis protein NfuA [Gemella haemolysans ATCC 10379] Length = 84 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V++IK L+ ++RP + DGG+I F Y+DGI+ + G C+ C + TLKY + L Sbjct: 9 VEKIKFELE-KIRPKLIMDGGNIEFINYKDGILKVRFLGECAHCELSHITLKYAIEKTLI 67 Query: 178 HFVPEVKDIRTV 189 +PE+K + V Sbjct: 68 EKIPEIKKVLQV 79 >gi|167747967|ref|ZP_02420094.1| hypothetical protein ANACAC_02699 [Anaerostipes caccae DSM 14662] gi|167652617|gb|EDR96746.1| hypothetical protein ANACAC_02699 [Anaerostipes caccae DSM 14662] Length = 116 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 45/73 (61%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +++ I++VL+ VRP + G++ Y++GI+ + + G C GCPSA+ T + +A + Sbjct: 18 MLREIEKVLEEDVRPYLLEHEGNVRISEYKEGILKVRLTGQCCGCPSAALTTEELIAEAV 77 Query: 177 NHFVPEVKDIRTV 189 +PEVKD+ V Sbjct: 78 KKKIPEVKDVVLV 90 >gi|18411785|ref|NP_567219.1| NFU1; structural molecule [Arabidopsis thaliana] gi|75163233|sp|Q93W77|NIFU1_ARATH RecName: Full=NifU-like protein 1, chloroplastic; Short=AtCNfu1; Short=AtCnfU-IVb; Flags: Precursor gi|14517434|gb|AAK62607.1| AT4g01940/T7B11_20 [Arabidopsis thaliana] gi|15215670|gb|AAK91380.1| AT4g01940/T7B11_20 [Arabidopsis thaliana] gi|20908090|gb|AAM26728.1| AT4g01940/T7B11_20 [Arabidopsis thaliana] gi|28207816|emb|CAD55558.1| NFU1 protein [Arabidopsis thaliana] gi|332656703|gb|AEE82103.1| NifU-like protein 1 [Arabidopsis thaliana] Length = 231 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 Q + VL++ VRP + DGG++ DG+V L ++GAC+ CPS+S T+ G+ +L Sbjct: 88 QNVDLVLED-VRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVLKE 146 Query: 179 -FVPEVKDIRTV 189 F +KDIR V Sbjct: 147 KFGDALKDIRQV 158 >gi|90416073|ref|ZP_01224006.1| yhgI protein [marine gamma proteobacterium HTCC2207] gi|90332447|gb|EAS47644.1| yhgI protein [marine gamma proteobacterium HTCC2207] Length = 193 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 39/79 (49%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 + DS + RI +L N + P +A GG + +G L G C GC + S TLK Sbjct: 104 VNDDSPIEDRINYLLYNEINPGLASHGGVVSLSEMDEGFAVLEFGGGCQGCSAVSMTLKE 163 Query: 171 GVANILNHFVPEVKDIRTV 189 GV L +PE+K +R V Sbjct: 164 GVEKTLMEKIPELKGVRDV 182 >gi|313675047|ref|YP_004053043.1| nitrogen-fixing nifu domain protein [Marivirga tractuosa DSM 4126] gi|312941745|gb|ADR20935.1| nitrogen-fixing NifU domain protein [Marivirga tractuosa DSM 4126] Length = 91 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V+ RI++ LD+ +RP + DGG++ +G++ L + GAC CP ++ TLK GV + Sbjct: 3 VLDRIEKALDS-IRPYLEADGGNVRILDLNEGVLRLELLGACGNCPMSTMTLKAGVEEAV 61 Query: 177 NHFVPEVKDIRTV 189 VPEV + V Sbjct: 62 KKSVPEVTSVEAV 74 >gi|297627112|ref|YP_003688875.1| NifU-like protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922877|emb|CBL57457.1| NifU-like protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 190 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 36/198 (18%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPG--------IA 52 + + E T +PATL+++ +L P A + S PG ++ Sbjct: 18 IALHPEATDDPATLRWVVSHHIL----------------PFAGTLASAPGLDDLLADRVS 61 Query: 53 SVYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI 111 V G D + V DW L P V +M D + G D ++ + Sbjct: 62 RVVVGPDTLLVTLAPGSDWAELGPVVRRALMRALGHTDAWV---GAADARV--------L 110 Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 D A+ E+++ + GG I G +DG+V + M GAC GCP+A T+ Sbjct: 111 SGDDALGVCADELIEGPIGDIARAHGGHIALAGVQDGVVTVKMSGACRGCPAAVITMHQR 170 Query: 172 VANILNHFVPEVKDIRTV 189 + + L VP + D+R++ Sbjct: 171 LEHQLRRRVPGLVDVRSI 188 >gi|331006512|ref|ZP_08329811.1| hypothetical protein IMCC1989_384 [gamma proteobacterium IMCC1989] gi|330419680|gb|EGG94047.1| hypothetical protein IMCC1989_384 [gamma proteobacterium IMCC1989] Length = 193 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 1/80 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLK 169 + DS V RI VL N V P +A GG + + DG L G C GC + S TLK Sbjct: 103 VNDDSPVEDRINYVLYNEVNPGLASHGGQVDLEDVTEDGFAILKFGGGCQGCSAVSLTLK 162 Query: 170 YGVANILNHFVPEVKDIRTV 189 GV L VPE+K ++ V Sbjct: 163 EGVEKTLLEKVPELKGVKDV 182 >gi|288818297|ref|YP_003432645.1| NifU-like protein [Hydrogenobacter thermophilus TK-6] gi|288787697|dbj|BAI69444.1| NifU-like protein [Hydrogenobacter thermophilus TK-6] gi|308751894|gb|ADO45377.1| nitrogen-fixing NifU domain protein [Hydrogenobacter thermophilus TK-6] Length = 87 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + I+ VLD +RPA+ DGGD+ + DG V + M GACSGC + TLK G+ L Sbjct: 7 EEIEAVLDE-IRPALRFDGGDVELVDVLEDGTVLVRMMGACSGCGMSVLTLKAGIERALK 65 Query: 178 HFVPEVKDIRTV 189 + PE+K+++ + Sbjct: 66 NKFPEIKEVKDI 77 >gi|309776492|ref|ZP_07671474.1| NifU domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308915720|gb|EFP61478.1| NifU domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 76 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + IK+ ++ ++RP + RDGGD+ F + DGIV + + GAC GC S +T++ G+ IL Sbjct: 5 IDEIKQTIE-KIRPYIQRDGGDVEFVSFEDGIVGVRLLGACVGCMSIDDTIQGGIEAILL 63 Query: 178 HFVPEVKDIRTV 189 V V +R V Sbjct: 64 DEVDGVSGVRLV 75 >gi|220931159|ref|YP_002508067.1| nitrogen-fixing NifU domain protein [Halothermothrix orenii H 168] gi|219992469|gb|ACL69072.1| nitrogen-fixing NifU domain protein [Halothermothrix orenii H 168] Length = 74 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%) Query: 127 NRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVK 184 +++RP++ DGGD+ D GIV + + GAC GCP ++ T+K G+ +L VP VK Sbjct: 10 DKIRPSLQADGGDVKLVDVDDEKGIVKVKLLGACQGCPMSTMTIKNGIERVLKEKVPGVK 69 Query: 185 DIRTV 189 +++ V Sbjct: 70 EVKPV 74 >gi|323704659|ref|ZP_08116237.1| nitrogen-fixing NifU domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323536121|gb|EGB25894.1| nitrogen-fixing NifU domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 73 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 2/69 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +R++EVL +RP++ DGGD+ + DG+V + + GAC GCP A TLK G+ + Sbjct: 3 ERVEEVL-KLLRPSLQADGGDVELVDVTDDGVVQVRLTGACGGCPFAVMTLKEGIERAIK 61 Query: 178 HFVPEVKDI 186 +PEVK++ Sbjct: 62 EEIPEVKEV 70 >gi|302335395|ref|YP_003800602.1| nitrogen-fixing NifU domain protein [Olsenella uli DSM 7084] gi|301319235|gb|ADK67722.1| nitrogen-fixing NifU domain protein [Olsenella uli DSM 7084] Length = 85 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKY 170 E+ + + + + E + +R ++ DGGD+ G+ D G+V L M+GAC+GCP +S + Sbjct: 4 ETKTPINRELLEATLDVIRQSLQADGGDVALVGFNDEGVVTLEMQGACAGCPLSSLDMSE 63 Query: 171 GVANILNHFVPEVKDIR 187 G+ IL VP V + Sbjct: 64 GIERILKEHVPGVTKVE 80 >gi|57238650|ref|YP_179781.1| NifU family protein [Campylobacter jejuni RM1221] gi|121612278|ref|YP_001001282.1| NifU family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|148925779|ref|ZP_01809467.1| nifU protein like protein [Campylobacter jejuni subsp. jejuni CG8486] gi|153951478|ref|YP_001398916.1| NifU family protein [Campylobacter jejuni subsp. doylei 269.97] gi|167006176|ref|ZP_02271934.1| NifU family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|218563228|ref|YP_002345008.1| NifU protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283957025|ref|ZP_06374497.1| NifU family protein [Campylobacter jejuni subsp. jejuni 1336] gi|2960001|emb|CAA76497.1| hypothetical protein [Campylobacter jejuni] gi|57167454|gb|AAW36233.1| NifU family protein [Campylobacter jejuni RM1221] gi|112360935|emb|CAL35736.1| NifU protein homolog [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|121504156|gb|EAQ72687.2| NifU family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|145845789|gb|EDK22880.1| nifU protein like protein [Campylobacter jejuni subsp. jejuni CG8486] gi|152938924|gb|ABS43665.1| NifU family protein [Campylobacter jejuni subsp. doylei 269.97] gi|283791526|gb|EFC30323.1| NifU family protein [Campylobacter jejuni subsp. jejuni 1336] gi|284926833|gb|ADC29185.1| NifU family protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315059089|gb|ADT73418.1| NifU-like protein [Campylobacter jejuni subsp. jejuni S3] gi|315927611|gb|EFV06942.1| nifU-like domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 90 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD ++ +K L+ + P + RDGG + F G ++GIV++ + GAC GC S+ TLKYG+ Sbjct: 5 SDEELINPVKASLEKSL-PMLERDGGGLEFLGIKNGIVYVHLIGACKGCASSGTTLKYGL 63 Query: 173 ANILN 177 L Sbjct: 64 ERQLK 68 >gi|255548369|ref|XP_002515241.1| Nitrogen fixation protein nifU, putative [Ricinus communis] gi|223545721|gb|EEF47225.1| Nitrogen fixation protein nifU, putative [Ricinus communis] Length = 210 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%) Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH-FVPEVKDIR 187 VRP + DGG++ DG++ L ++GAC CPS++ T+K G+ +L F VKDIR Sbjct: 76 VRPYLIADGGNVDVVSVEDGVISLQLQGACGSCPSSTTTMKMGIERVLKEKFGDSVKDIR 135 Query: 188 TV 189 V Sbjct: 136 QV 137 >gi|301064688|ref|ZP_07205077.1| NifU-like protein [delta proteobacterium NaphS2] gi|300441230|gb|EFK05606.1| NifU-like protein [delta proteobacterium NaphS2] Length = 75 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +++++ L+ +VRP++ DGGD+ +G+V + + GAC GCP + TLK G+ +L Sbjct: 5 EKVQDALE-KVRPSLQADGGDVQLVDVDANGLVKVKLTGACGGCPMSQMTLKMGIEKVLK 63 Query: 178 HFVPEVKDIRT 188 VPEV + + Sbjct: 64 QNVPEVTSVES 74 >gi|188996345|ref|YP_001930596.1| nitrogen-fixing NifU domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931412|gb|ACD66042.1| nitrogen-fixing NifU domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 79 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 2/69 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 Q+++EVL+ +VRP + DGGD+ DG V++ + GACSGC + TLK GV L Sbjct: 6 QKVEEVLE-QVRPYLRFDGGDVELVDVGEDGTVYVRLMGACSGCHMSLWTLKGGVETRLK 64 Query: 178 HFVPEVKDI 186 +PEVK++ Sbjct: 65 QAIPEVKEV 73 >gi|116748860|ref|YP_845547.1| NifU domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116697924|gb|ABK17112.1| nitrogen-fixing NifU domain protein [Syntrophobacter fumaroxidans MPOB] Length = 72 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++++E L ++RP + RDGG + + +V + + GAC GCP + TLK G+ ++ Sbjct: 3 KKVEEAL-AKIRPMLERDGGSVELVDVQGTVVKVRLTGACHGCPMSQMTLKAGIERVVKE 61 Query: 179 FVPEVKDIRTV 189 VPEV ++++V Sbjct: 62 NVPEVTEVQSV 72 >gi|302848639|ref|XP_002955851.1| hypothetical protein VOLCADRAFT_96828 [Volvox carteri f. nagariensis] gi|300258819|gb|EFJ43052.1| hypothetical protein VOLCADRAFT_96828 [Volvox carteri f. nagariensis] Length = 540 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V+ ++ L+ VRP + DGGD+ +DGIV+L ++GACS CPS S T+K G+ ++ Sbjct: 396 TVEAVQAALEE-VRPYLMADGGDVEVVEVKDGIVYLRLQGACSSCPSQSATMKGGIERVI 454 Query: 177 NH-FVPEVKDI 186 F +V DI Sbjct: 455 RQTFGDQVIDI 465 >gi|86149351|ref|ZP_01067582.1| NifU family protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|86152315|ref|ZP_01070526.1| NifU family protein [Campylobacter jejuni subsp. jejuni 260.94] gi|86152773|ref|ZP_01070978.1| NifU family protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|88596032|ref|ZP_01099269.1| NifU family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|85840133|gb|EAQ57391.1| NifU family protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840804|gb|EAQ58055.1| NifU family protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85843658|gb|EAQ60868.1| NifU family protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|88190873|gb|EAQ94845.1| NifU family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|315928875|gb|EFV08137.1| nifU-like domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 89 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD ++ +K L+ + P + RDGG + F G ++GIV++ + GAC GC S+ TLKYG+ Sbjct: 4 SDEELINPVKASLEKSL-PMLERDGGGLEFLGIKNGIVYVHLIGACKGCASSGTTLKYGL 62 Query: 173 ANILN 177 L Sbjct: 63 ERQLK 67 >gi|315187331|gb|EFU21087.1| nitrogen-fixing NifU domain protein [Spirochaeta thermophila DSM 6578] Length = 74 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Query: 127 NRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKD 185 N +RPA+ DGGDI + + G+V + + GAC GCP + TLK GV L +PE+ Sbjct: 11 NEIRPALKADGGDIQLLEVTEQGVVKVRLTGACHGCPMSQITLKQGVEAYLKRKLPEISS 70 Query: 186 IRTV 189 + V Sbjct: 71 VEAV 74 >gi|117924033|ref|YP_864650.1| NifU domain-containing protein [Magnetococcus sp. MC-1] gi|117607789|gb|ABK43244.1| nitrogen-fixing NifU domain protein [Magnetococcus sp. MC-1] Length = 76 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Query: 129 VRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 +RP + RDGGD+ F D +V + +RGAC CP A TLK G+ ++ +PEV + Sbjct: 12 IRPMLQRDGGDVEFVDLTEDNVVQVRLRGACGSCPGAMMTLKGGIERLMKERIPEVHSVE 71 Query: 188 TV 189 V Sbjct: 72 NV 73 >gi|328949227|ref|YP_004366564.1| nitrogen-fixing NifU domain-containing protein [Treponema succinifaciens DSM 2489] gi|328449551|gb|AEB15267.1| nitrogen-fixing NifU domain-containing protein [Treponema succinifaciens DSM 2489] Length = 78 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGV 172 D A++ ++KE L+ RP + DGGD+ F D V L + GAC CP A+ TLK G+ Sbjct: 3 DEALIAKVKETLE-AFRPQLNADGGDMEFINIDDENKVHLKLTGACGSCPMATMTLKMGI 61 Query: 173 ANILNHFVPEVKDI 186 L PE+ ++ Sbjct: 62 ERYLKETCPEISEV 75 >gi|152990000|ref|YP_001355722.1| hypothetical protein NIS_0251 [Nitratiruptor sp. SB155-2] gi|151421861|dbj|BAF69365.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 100 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD + +++V++ +++P +A DGGDI G ++G VF+ + GAC GC ++ TLKYGV Sbjct: 6 SDEDLYPAVEKVIE-KIKPMLALDGGDIKLLGVKNGRVFVQLGGACVGCSASGNTLKYGV 64 Query: 173 ANILN 177 L Sbjct: 65 ERQLK 69 >gi|310643822|ref|YP_003948580.1| nifu-like protein [Paenibacillus polymyxa SC2] gi|309248772|gb|ADO58339.1| NifU-like protein [Paenibacillus polymyxa SC2] Length = 81 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%) Query: 113 SDSAVVQRIKEVLD--NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 S++ VQ EV D +++RP + RDGGD+ DGIV L + GAC CPS++ TLK Sbjct: 2 SEAQSVQMYDEVADVLDKLRPFLQRDGGDVELVDVEDGIVKLKLVGACGSCPSSTITLKA 61 Query: 171 GVANIL 176 G+ L Sbjct: 62 GIERAL 67 >gi|293402218|ref|ZP_06646356.1| NifU domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304325|gb|EFE45576.1| NifU domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 78 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 127 NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 ++RP + RDGGD+ + + DGIV + + GAC GC S +TLK G+ I+ V V ++ Sbjct: 13 EKIRPYIQRDGGDVEYVSFTDGIVRVRLLGACVGCMSIGDTLKDGIEAIIMDEVAGVSEV 72 Query: 187 R 187 R Sbjct: 73 R 73 >gi|225848086|ref|YP_002728249.1| hypothetical protein SULAZ_0254 [Sulfurihydrogenibium azorense Az-Fu1] gi|225643275|gb|ACN98325.1| conserved domain protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 79 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 Q+++EVL+ +VRP + DGGD+ + DG V++ + G+CSGC + TLK GV L Sbjct: 6 QKVEEVLE-QVRPYLRFDGGDVELVDVSEDGTVYVRLMGSCSGCAMSLWTLKGGVEARLK 64 Query: 178 HFVPEVKDIRTV 189 +PEVK++ V Sbjct: 65 QAIPEVKEVVAV 76 >gi|237756555|ref|ZP_04585079.1| putative conserved hypothetical protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237691283|gb|EEP60367.1| putative conserved hypothetical protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 78 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 Q+++EVL+ +VRP + DGGD+ DG V++ + GACSGC + TLK GV L Sbjct: 6 QKVEEVLE-QVRPYLRFDGGDVELVDVGEDGTVYVRLMGACSGCHMSLWTLKGGVEARLK 64 Query: 178 HFVPEVKDIRTV 189 +PEVK++ V Sbjct: 65 QAIPEVKEVVAV 76 >gi|2688826|gb|AAB88877.1| putative NifU protein [Prunus armeniaca] Length = 76 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%) Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH-FVPEVKDIR 187 VRP + DGGD+ DG+V L ++GAC CPS++ T+K G+ +L F +KDI+ Sbjct: 14 VRPYLIADGGDVDVVSVEDGVVSLKLQGACGSCPSSTTTMKMGIERVLKEKFGDALKDIQ 73 Query: 188 TV 189 V Sbjct: 74 QV 75 >gi|148263012|ref|YP_001229718.1| NifU domain-containing protein [Geobacter uraniireducens Rf4] gi|146396512|gb|ABQ25145.1| nitrogen-fixing NifU domain protein [Geobacter uraniireducens Rf4] Length = 73 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 +++ +K+VLD +RP + DGGD+ + + DG+V + + GAC CP ++ TLK G+ Sbjct: 1 MIEEVKKVLD-LIRPNLQADGGDVELVEVTEDGVVKVKLVGACGHCPMSTMTLKMGIERT 59 Query: 176 LNHFVPEVKDIRTV 189 L VP VK++ +V Sbjct: 60 LKEKVPGVKEVISV 73 >gi|57505611|ref|ZP_00371538.1| NifU domain protein [Campylobacter upsaliensis RM3195] gi|57016158|gb|EAL52945.1| NifU domain protein [Campylobacter upsaliensis RM3195] Length = 90 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 2/75 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD ++ +K+ L+ + P + RDGG + F G ++GIV++ + GAC GC S+S TLKY + Sbjct: 5 SDEELINPVKKSLEKSL-PILERDGGGLEFLGVKNGIVYVHLIGACKGCASSSITLKYSL 63 Query: 173 ANILNHFV-PEVKDI 186 L + PE+ I Sbjct: 64 ERQLKMDIHPEISII 78 >gi|294660416|ref|NP_853167.2| hypothetical protein MGA_0005 [Mycoplasma gallisepticum str. R(low)] gi|284812075|gb|AAP56735.2| conserved hypothetical protein [Mycoplasma gallisepticum str. R(low)] gi|284930649|gb|ADC30588.1| conserved hypothetical protein [Mycoplasma gallisepticum str. R(high)] Length = 99 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 32/54 (59%) Query: 133 VARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 + RDGGD+ F+GY GIV + + G C GC T K GV IL +PEVK + Sbjct: 23 IKRDGGDLSFEGYEKGIVTIKLLGNCDGCSLVDMTYKDGVETILKAEIPEVKSV 76 >gi|290967833|ref|ZP_06559386.1| NifU-like protein [Megasphaera genomosp. type_1 str. 28L] gi|290782192|gb|EFD94767.1| NifU-like protein [Megasphaera genomosp. type_1 str. 28L] Length = 94 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 43/68 (63%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +++ +L ++RP++ GG++ Y DGI+ + + G CSGCPSA+ T + + I+ Sbjct: 6 QLETLLAEKIRPSLQAHGGNVEIISYTDGILRIRLTGRCSGCPSATLTTEEFINQIVQTA 65 Query: 180 VPEVKDIR 187 P+V+++R Sbjct: 66 FPDVREVR 73 >gi|256372488|ref|YP_003110312.1| nitrogen-fixing NifU domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256009072|gb|ACU54639.1| nitrogen-fixing NifU domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 204 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 40/72 (55%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 S + +R+ +L +V PA+A GG G D + ++ M G C GC AS TL G+A Sbjct: 114 SDLARRVDSILQEQVNPAIAAHGGYAELVGVVDEVAYVLMGGGCQGCGLASATLTQGIAV 173 Query: 175 ILNHFVPEVKDI 186 + VPE++D+ Sbjct: 174 AIRDAVPEIRDV 185 >gi|157415859|ref|YP_001483115.1| NifU family protein [Campylobacter jejuni subsp. jejuni 81116] gi|157386823|gb|ABV53138.1| NifU-like protein [Campylobacter jejuni subsp. jejuni 81116] gi|307748496|gb|ADN91766.1| NifU family protein [Campylobacter jejuni subsp. jejuni M1] gi|315931685|gb|EFV10646.1| nifU-like domain protein [Campylobacter jejuni subsp. jejuni 327] Length = 90 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD ++ +K L+ + P + RDGG + F G ++G+V++ + GAC GC S+ TLKYG+ Sbjct: 5 SDEELINPVKASLEKSL-PMLERDGGGLEFLGIKNGVVYVHLIGACKGCASSGTTLKYGL 63 Query: 173 ANILN 177 L Sbjct: 64 ERQLK 68 >gi|218886099|ref|YP_002435420.1| nitrogen-fixing NifU domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757053|gb|ACL07952.1| nitrogen-fixing NifU domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 77 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 2/75 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 A+ +R++ LD +VRP + DGGD+ + + DG+V + + GAC GCP + +TLK GV Sbjct: 4 AIHERVQAALD-KVRPYLQGDGGDVELVEITADGVVRVRLTGACKGCPMSQQTLKGGVER 62 Query: 175 ILNHFVPEVKDIRTV 189 ++ V EVK + V Sbjct: 63 MVLKEVAEVKRVEAV 77 >gi|291333447|gb|ADD93149.1| nitrogen fixing NifU-like protein [uncultured archaeon MedDCM-OCT-S05-C57] Length = 160 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 14/147 (9%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I+ E T +P +F+ VL + F + +PLA R+ ++P IA V +T Sbjct: 8 IRGEPTADPQKCRFVLEAEVLSRSPVSFDRESDTSKAPLAERLLALPYIAGVSISGSAVT 67 Query: 63 VGKDQYD-WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 + D + W + + G+I E +G+P + ++ D+G D ++ Sbjct: 68 LTGDNVESWPAIGKEIGGVIREQIKTGEPAVEE------EVMDIGDADLF-------TQV 114 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDG 148 ++ N V P++A GG I DG Sbjct: 115 NLLIKNDVNPSIASHGGTITLHSVNDG 141 >gi|205355651|ref|ZP_03222421.1| NifU protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205346428|gb|EDZ33061.1| NifU protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 90 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD ++ +K L+ + P + RDGG + F G ++GIV++ + GAC GC S+ TLKYG+ Sbjct: 5 SDEELINPVKASLEKSL-PMLERDGGGLEFLGIKNGIVYVHLIGACKGCVSSGTTLKYGL 63 >gi|224064633|ref|XP_002301529.1| predicted protein [Populus trichocarpa] gi|222843255|gb|EEE80802.1| predicted protein [Populus trichocarpa] Length = 216 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 Q + VL+ VRP + DGG++ DG++ L ++GAC CPS++ T+K G+ +L Sbjct: 73 QNVDLVLE-EVRPYLIADGGNVDVVSVEDGVISLKLQGACGDCPSSTTTMKMGIERVLKE 131 Query: 179 -FVPEVKDIRTV 189 F +KDIR V Sbjct: 132 KFGDAIKDIRQV 143 >gi|254422508|ref|ZP_05036226.1| hypothetical protein S7335_2660 [Synechococcus sp. PCC 7335] gi|196189997|gb|EDX84961.1| hypothetical protein S7335_2660 [Synechococcus sp. PCC 7335] Length = 79 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 +++VLD +RP + DGG++ IV L ++GAC CPS++ TL+ G+ L F+ Sbjct: 11 VEKVLDE-LRPYLMADGGNVELVELDGPIVKLRLQGACGSCPSSAMTLRMGIERRLREFI 69 Query: 181 PEVKDIRTV 189 PE+ +I V Sbjct: 70 PEIAEIEQV 78 >gi|257459224|ref|ZP_05624343.1| NifU family protein [Campylobacter gracilis RM3268] gi|257443609|gb|EEV18733.1| NifU family protein [Campylobacter gracilis RM3268] Length = 88 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 42/64 (65%), Gaps = 1/64 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +D ++ +++ L+ +RP + DGGD+ G ++G+V++ + G C GC ++S+TLKYGV Sbjct: 5 TDEELLAPVQDSLE-LIRPMLQNDGGDMKLLGIKNGVVYVRLTGHCHGCAASSQTLKYGV 63 Query: 173 ANIL 176 L Sbjct: 64 ERQL 67 >gi|206890081|ref|YP_002249266.1| thioredoxin family protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742019|gb|ACI21076.1| thioredoxin family protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 74 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 ++++VL ++R + DGG+I +D IV++ ++GAC CP A+ TLK V L Sbjct: 6 KVEQVL-GKIRVGLMADGGNIDLVDIKDNIVYVKLKGACGTCPMATLTLKNWVEKTLKSE 64 Query: 180 VPEVKDIRTV 189 +PEVK++ V Sbjct: 65 IPEVKEVVAV 74 >gi|118578775|ref|YP_900025.1| NifU domain-containing protein [Pelobacter propionicus DSM 2379] gi|118501485|gb|ABK97967.1| nitrogen-fixing NifU domain protein [Pelobacter propionicus DSM 2379] Length = 74 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%) Query: 128 RVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +VRPA+ DGGD+ + + DGIV + ++GAC CP ++ TLK G+ + +P VK++ Sbjct: 11 QVRPALQADGGDVELVEVTADGIVKVRLKGACGSCPMSTMTLKMGIERAMKEQIPAVKEV 70 Query: 187 RTV 189 V Sbjct: 71 VQV 73 >gi|218438992|ref|YP_002377321.1| nitrogen-fixing NifU domain protein [Cyanothece sp. PCC 7424] gi|218171720|gb|ACK70453.1| nitrogen-fixing NifU domain protein [Cyanothece sp. PCC 7424] Length = 81 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + +++VLD +RP + DGG++ IV L ++GAC CPS++ TLK G Sbjct: 4 ETLPLTTENVEQVLDE-LRPYLMADGGNVELVEIDGPIVKLRLQGACGSCPSSTMTLKMG 62 Query: 172 VANILNHFVPEVKDI 186 + L ++PE+ ++ Sbjct: 63 IERRLREYIPEIAEV 77 >gi|124009117|ref|ZP_01693800.1| conserved domain protein [Microscilla marina ATCC 23134] gi|123985331|gb|EAY25251.1| conserved domain protein [Microscilla marina ATCC 23134] Length = 84 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 +++R+ LD +RP + DGGD+ V + DG+V L + G+C CP ++ TLK G+ Sbjct: 7 MIERVDNALDT-IRPYLKTDGGDVKVLEVSEDGVVKLELMGSCGSCPMSAMTLKAGIEES 65 Query: 176 LNHFVPEVKDIRTV 189 + VPE+ + + Sbjct: 66 IRKAVPEITAVEAI 79 >gi|89100547|ref|ZP_01173407.1| nitrogen fixation protein (NifU protein) [Bacillus sp. NRRL B-14911] gi|89084734|gb|EAR63875.1| nitrogen fixation protein (NifU protein) [Bacillus sp. NRRL B-14911] Length = 77 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++ ++EVLD ++RP + RDGGD DGIV L + GAC CPS++ TLK G+ L Sbjct: 5 IISDVQEVLD-KLRPFLLRDGGDCELVDVEDGIVKLRLLGACGSCPSSTITLKAGIERAL 63 >gi|110738975|dbj|BAF01408.1| nitrogen fixation like protein [Arabidopsis thaliana] gi|227206276|dbj|BAH57193.1| AT4G25910 [Arabidopsis thaliana] Length = 155 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD VRP++ DGG++ +V L ++GAC CPS+S TLK G+ + L Sbjct: 6 ENVERVLDE-VRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRLRD 64 Query: 179 FVPEVKDI 186 +PE+ + Sbjct: 65 KIPEIMSV 72 >gi|303245787|ref|ZP_07332070.1| nitrogen-fixing NifU domain protein [Desulfovibrio fructosovorans JJ] gi|302493050|gb|EFL52915.1| nitrogen-fixing NifU domain protein [Desulfovibrio fructosovorans JJ] Length = 73 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 1/63 (1%) Query: 128 RVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 ++RP++ DGGD+ DG IV + + GAC GCP + TLK G+ IL VP VK + Sbjct: 11 KIRPSLQADGGDVELVEVTDGGIVKVRLTGACKGCPMSQMTLKNGIERILMQSVPGVKAV 70 Query: 187 RTV 189 V Sbjct: 71 EAV 73 >gi|148907013|gb|ABR16650.1| unknown [Picea sitchensis] Length = 465 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 1/64 (1%) Query: 127 NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH-FVPEVKD 185 N VRP + DGG++ DG++ L ++GAC CPS++ T+K G+ +L F +K+ Sbjct: 329 NDVRPYLVADGGNVEVASVEDGVISLRLQGACGTCPSSTTTMKMGIERVLKEKFGDVLKE 388 Query: 186 IRTV 189 IR V Sbjct: 389 IRQV 392 >gi|157736773|ref|YP_001489456.1| NifU-like protein [Arcobacter butzleri RM4018] gi|315635952|ref|ZP_07891213.1| NifU family protein [Arcobacter butzleri JV22] gi|157698627|gb|ABV66787.1| conserved hypothetical NifU-like protein [Arcobacter butzleri RM4018] gi|315479736|gb|EFU70408.1| NifU family protein [Arcobacter butzleri JV22] Length = 92 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 38/60 (63%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +D + + +++N++ P +ARDGG I ++ +F+ ++GAC GC ++S TLKY V Sbjct: 5 TDEDLQNPVSSIIENKISPMLARDGGAIKLLAIKNARIFVQLQGACVGCSASSSTLKYIV 64 >gi|224373701|ref|YP_002608073.1| NifU family protein [Nautilia profundicola AmH] gi|223588484|gb|ACM92220.1| NifU family protein [Nautilia profundicola AmH] Length = 98 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 S+ + + + VLD VRP + DGGD+ R IVF+ ++G C GC SA TLKYG+ Sbjct: 7 SNEDLKEAVAGVLD-EVRPMLQMDGGDVTLIDVRKPIVFVQLQGGCVGCASAGATLKYGI 65 Query: 173 ANILNHFV-PEV 183 L + PE+ Sbjct: 66 EKALKEKIHPEL 77 >gi|218778425|ref|YP_002429743.1| nitrogen-fixing NifU domain protein [Desulfatibacillum alkenivorans AK-01] gi|218759809|gb|ACL02275.1| nitrogen-fixing NifU domain protein [Desulfatibacillum alkenivorans AK-01] Length = 74 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +++K +D +RP + RDGGD+ + + DG+V + + GAC GCP + +TLK G+ + Sbjct: 3 EQVKAAIDE-IRPTLQRDGGDVELVEVGDDGVVKVRLVGACKGCPMSQQTLKNGIEKYMK 61 Query: 178 HFVPEVKDIRTV 189 +P VK + V Sbjct: 62 KNIPGVKSVEGV 73 >gi|253575294|ref|ZP_04852632.1| nitrogen-fixing NifU domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251845291|gb|EES73301.1| nitrogen-fixing NifU domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 81 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 1/57 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + EVLD ++RP + RDGGD+ DGIV L + GAC CPS++ TLK G+ L Sbjct: 12 EVLEVLD-KLRPFLQRDGGDVELVDVEDGIVKLKLMGACGSCPSSTITLKAGIERAL 67 >gi|85859635|ref|YP_461837.1| nifU-like domain-containing protein [Syntrophus aciditrophicus SB] gi|85722726|gb|ABC77669.1| nifU-like domain protein [Syntrophus aciditrophicus SB] Length = 73 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Query: 120 RIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +++E +D VRP + DGGD+ + DG+V + + GAC GC + TLK G+ L Sbjct: 4 KVQEAIDQ-VRPGLQADGGDVELVDVTEDGVVKVRLVGACRGCAMSQMTLKMGIERFLKE 62 Query: 179 FVPEVKDIRTV 189 +PEVK++ V Sbjct: 63 RIPEVKEVVAV 73 >gi|269216053|ref|ZP_06159907.1| NifU family protein [Slackia exigua ATCC 700122] gi|269130312|gb|EEZ61390.1| NifU family protein [Slackia exigua ATCC 700122] Length = 76 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 2/69 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +R+ VLD VRP++ DGGD+ + DGIV + ++GAC+GC +S T+ GV IL Sbjct: 6 KRVSRVLD-MVRPSLQADGGDLELVDITDDGIVRVRLQGACNGCALSSLTIANGVERILK 64 Query: 178 HFVPEVKDI 186 VPEV + Sbjct: 65 EHVPEVAKV 73 >gi|18416645|ref|NP_567735.1| NFU3; structural molecule [Arabidopsis thaliana] gi|75147908|sp|Q84RQ7|NIFU3_ARATH RecName: Full=NifU-like protein 3, chloroplastic; Short=AtCNfu3; Short=AtCnfU-IVa; Flags: Precursor gi|28207820|emb|CAD55560.1| NFU3 protein [Arabidopsis thaliana] gi|88196759|gb|ABD43022.1| At4g25910 [Arabidopsis thaliana] gi|222423670|dbj|BAH19802.1| AT4G25910 [Arabidopsis thaliana] gi|332659732|gb|AEE85132.1| NifU-like protein 3 [Arabidopsis thaliana] Length = 236 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD VRP++ DGG++ +V L ++GAC CPS+S TLK G+ + L Sbjct: 87 ENVERVLDE-VRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRLRD 145 Query: 179 FVPEVKDI 186 +PE+ + Sbjct: 146 KIPEIMSV 153 >gi|322420167|ref|YP_004199390.1| nitrogen-fixing NifU domain-containing protein [Geobacter sp. M18] gi|320126554|gb|ADW14114.1| nitrogen-fixing NifU domain protein [Geobacter sp. M18] Length = 73 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + +K +L+N +RPA+ DGGD+ + + DG+V + + GAC CP ++ TLK G+ + Sbjct: 3 EEVKAILEN-IRPALQADGGDVELVEVTDDGVVKVRLVGACGHCPMSTMTLKMGIERTIK 61 Query: 178 HFVPEVKDIRTV 189 +P VK++ +V Sbjct: 62 EKIPGVKEVVSV 73 >gi|4538920|emb|CAB39656.1| nitrogen fixation like protein [Arabidopsis thaliana] gi|7269442|emb|CAB79446.1| nitrogen fixation like protein [Arabidopsis thaliana] Length = 224 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD VRP++ DGG++ +V L ++GAC CPS+S TLK G+ + L Sbjct: 75 ENVERVLDE-VRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRLRD 133 Query: 179 FVPEVKDI 186 +PE+ + Sbjct: 134 KIPEIMSV 141 >gi|297803520|ref|XP_002869644.1| hypothetical protein ARALYDRAFT_492226 [Arabidopsis lyrata subsp. lyrata] gi|297315480|gb|EFH45903.1| hypothetical protein ARALYDRAFT_492226 [Arabidopsis lyrata subsp. lyrata] Length = 238 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD VRP++ DGG++ +V L ++GAC CPS+S TLK G+ + L Sbjct: 89 ENVERVLDE-VRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRLRD 147 Query: 179 FVPEVKDI 186 +PE+ + Sbjct: 148 KIPEIMSV 155 >gi|222054851|ref|YP_002537213.1| nitrogen-fixing NifU domain protein [Geobacter sp. FRC-32] gi|221564140|gb|ACM20112.1| nitrogen-fixing NifU domain protein [Geobacter sp. FRC-32] Length = 73 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 +++ +K+VLD +RP + DGGD+ + + DG+V + + GAC CP ++ TLK G+ Sbjct: 1 MIEDVKKVLDT-IRPNLQADGGDVELVEVGEDGVVKVKLVGACGHCPMSTMTLKMGIERT 59 Query: 176 LNHFVPEVKDIRTV 189 L VP VK++ +V Sbjct: 60 LKEKVPGVKEVISV 73 >gi|118475450|ref|YP_891271.1| NifU family protein [Campylobacter fetus subsp. fetus 82-40] gi|118414676|gb|ABK83096.1| NifU family protein [Campylobacter fetus subsp. fetus 82-40] Length = 88 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD +++ +KE L + P + +DGG + G ++G+V++ + G C GC ++S+TLKYGV Sbjct: 5 SDEELLEPVKESL-KVIMPMLEQDGGGMELLGIKNGVVYVRLTGHCHGCAASSQTLKYGV 63 Query: 173 ANILN 177 L Sbjct: 64 ERQLK 68 >gi|21554503|gb|AAM63593.1| nitrogen fixation like protein [Arabidopsis thaliana] Length = 236 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD VRP++ DGG++ +V L ++GAC CPS+S TLK G+ + L Sbjct: 87 ENVERVLDE-VRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRLRD 145 Query: 179 FVPEVKDI 186 +PE+ + Sbjct: 146 KIPEIMSV 153 >gi|251798821|ref|YP_003013552.1| nitrogen-fixing NifU domain protein [Paenibacillus sp. JDR-2] gi|247546447|gb|ACT03466.1| nitrogen-fixing NifU domain protein [Paenibacillus sp. JDR-2] Length = 80 Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 2/56 (3%) Query: 123 EVLD--NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 EVLD +++RP + RDGGD+ DGIV L + GAC CPS++ TLK G+ L Sbjct: 11 EVLDVLDKLRPFLQRDGGDVELVDVEDGIVKLRLMGACGSCPSSTITLKAGIERAL 66 >gi|284929666|ref|YP_003422188.1| thioredoxin-like protein [cyanobacterium UCYN-A] gi|284810110|gb|ADB95807.1| thioredoxin-like protein [cyanobacterium UCYN-A] Length = 76 Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 +++VLD +RP + DGG++ IV L ++GAC CPS++ TLK G+ L + Sbjct: 8 VEQVLDE-LRPYLIADGGNVELVEIDGAIVKLRLQGACGSCPSSTMTLKMGIERRLKEMI 66 Query: 181 PEVKDI 186 PEV ++ Sbjct: 67 PEVSEV 72 >gi|283953743|ref|ZP_06371274.1| NifU family protein [Campylobacter jejuni subsp. jejuni 414] gi|283794784|gb|EFC33522.1| NifU family protein [Campylobacter jejuni subsp. jejuni 414] Length = 90 Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD ++ +K L+ + P + RDGG + F G ++G+V++ + GAC GC S+ TLKYG+ Sbjct: 5 SDEELINPVKASLEKSL-PMLERDGGGLEFLGIKNGVVYVHLIGACKGCTSSGITLKYGL 63 Query: 173 ANILN 177 L Sbjct: 64 ERQLK 68 >gi|157693637|ref|YP_001488099.1| iron-sulfur assembly protein [Bacillus pumilus SAFR-032] gi|194015287|ref|ZP_03053903.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|157682395|gb|ABV63539.1| possible iron-sulfur assembly protein [Bacillus pumilus SAFR-032] gi|194012691|gb|EDW22257.1| conserved domain protein [Bacillus pumilus ATCC 7061] Length = 78 Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 1/57 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +++EVLD ++RP + RDGGD DGIV L + GAC CPS++ TLK G+ L Sbjct: 9 QVQEVLD-KLRPFLLRDGGDCELVDIEDGIVKLRLLGACGSCPSSTITLKAGIERAL 64 >gi|308272822|emb|CBX29426.1| hypothetical protein N47_J04070 [uncultured Desulfobacterium sp.] Length = 61 Score = 54.3 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 +RP + +DGGD+ +GIV + ++GAC+GCP + TLK G+ +L VP VK + Sbjct: 1 MRPMLQKDGGDVEIVDVSEGIVKVRLQGACAGCPMSQMTLKNGIEKLLMQDVPGVKSVVA 60 Query: 189 V 189 V Sbjct: 61 V 61 >gi|242277615|ref|YP_002989744.1| Fe-S cluster assembly protein NifU [Desulfovibrio salexigens DSM 2638] gi|242120509|gb|ACS78205.1| Fe-S cluster assembly protein NifU [Desulfovibrio salexigens DSM 2638] Length = 279 Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 1/66 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 Q + +V+D +RPA+ +DGGDI V +S+RGAC GCPS+ TLK V L Sbjct: 209 QLVTKVIDEEIRPALNKDGGDIELIDIDGHEVIVSLRGACVGCPSSGRTLKDFVERRLKE 268 Query: 179 FV-PEV 183 V PE+ Sbjct: 269 TVEPEI 274 >gi|168037489|ref|XP_001771236.1| predicted protein [Physcomitrella patens subsp. patens] gi|162677477|gb|EDQ63947.1| predicted protein [Physcomitrella patens subsp. patens] Length = 165 Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 1/59 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V+ + +VLD VRP + DGG++ +DG+V L ++GAC CPS++ T+K G+ +L Sbjct: 24 VENVDKVLD-EVRPYLIADGGNVEVVAVKDGVVSLRLQGACGTCPSSTSTMKMGIERVL 81 >gi|255582605|ref|XP_002532084.1| Nitrogen fixation protein nifU, putative [Ricinus communis] gi|223528244|gb|EEF30298.1| Nitrogen fixation protein nifU, putative [Ricinus communis] Length = 220 Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++VLD VRP + DGG++V +V L ++GAC CPS++ TLK G+ L Sbjct: 72 ENVEKVLDE-VRPGLMADGGNVVLHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRD 130 Query: 179 FVPEVKDIRTV 189 +PE+ + + Sbjct: 131 KIPEIMAVEQI 141 >gi|270308880|ref|YP_003330938.1| NifU domain protein [Dehalococcoides sp. VS] gi|270154772|gb|ACZ62610.1| NifU domain protein [Dehalococcoides sp. VS] Length = 72 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 49/70 (70%), Gaps = 1/70 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++++++ VLD ++RPA+ DGG++ DG+V + + GAC+GCP ++ TLK G+ IL Sbjct: 1 MLEKVEAVLD-KIRPALEADGGNVELVDVVDGVVKVKLVGACAGCPMSTMTLKNGIERIL 59 Query: 177 NHFVPEVKDI 186 +PEVK++ Sbjct: 60 KREIPEVKEV 69 >gi|329769819|ref|ZP_08261220.1| hypothetical protein HMPREF0433_00984 [Gemella sanguinis M325] gi|328838181|gb|EGF87799.1| hypothetical protein HMPREF0433_00984 [Gemella sanguinis M325] Length = 84 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 37/63 (58%) Query: 127 NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 ++RP + DGGDI F ++DGI+ L +G C+ C + T+K+ + + +PEVK + Sbjct: 17 EKIRPKLIMDGGDIEFVNFKDGILKLRFKGECAHCELSHITMKFAIEKNILEKIPEVKKV 76 Query: 187 RTV 189 V Sbjct: 77 TEV 79 >gi|163781905|ref|ZP_02176905.1| nifU-like domain protein [Hydrogenivirga sp. 128-5-R1-1] gi|159883125|gb|EDP76629.1| nifU-like domain protein [Hydrogenivirga sp. 128-5-R1-1] Length = 87 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILN 177 + +++VLD +RPA+ DGGD+ + DG V + + GACSGC + TLK G+ L Sbjct: 7 EEVEKVLDE-IRPALRFDGGDVELVDIQEDGTVLVRLVGACSGCGMSVLTLKAGIERALK 65 Query: 178 HFVPEVKDIRTV 189 PE+K+++ V Sbjct: 66 QKFPEIKEVKDV 77 >gi|254415273|ref|ZP_05029035.1| hypothetical protein MC7420_2699 [Microcoleus chthonoplastes PCC 7420] gi|196178079|gb|EDX73081.1| hypothetical protein MC7420_2699 [Microcoleus chthonoplastes PCC 7420] Length = 84 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD +RP + DGG++ IV L ++GAC CPS++ TLK G+ L Sbjct: 14 ENVEAVLDE-LRPYLMADGGNVDLVEIDGPIVKLRLQGACGSCPSSAMTLKMGIERRLRE 72 Query: 179 FVPEVKDIRTV 189 F+PE+ ++ V Sbjct: 73 FIPEIVEVEQV 83 >gi|325954760|ref|YP_004238420.1| nitrogen-fixing NifU domain-containing protein [Weeksella virosa DSM 16922] gi|323437378|gb|ADX67842.1| nitrogen-fixing NifU domain-containing protein [Weeksella virosa DSM 16922] Length = 93 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 ++ ++ + + LD +RP + DGGDI +D +V + ++GAC+ C TLK GV Sbjct: 2 NTELIDNVHKALD-EIRPFLNSDGGDIELVEVKDNVVKVRLKGACTSCSVNQMTLKAGVE 60 Query: 174 NILNHFVPEV 183 + FVPE+ Sbjct: 61 TTVKKFVPEI 70 >gi|309389827|gb|ADO77707.1| nitrogen-fixing NifU domain protein [Halanaerobium praevalens DSM 2228] Length = 73 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 42/64 (65%), Gaps = 1/64 (1%) Query: 127 NRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKD 185 +++RP++ DGGD+ + + GIV + + GACSGCP ++ T+K G+ L V VK+ Sbjct: 10 DKIRPSLQADGGDVELIEVTEAGIVKVKLLGACSGCPMSTLTIKNGIEKTLKQNVEGVKE 69 Query: 186 IRTV 189 +++V Sbjct: 70 VQSV 73 >gi|323453984|gb|EGB09855.1| hypothetical protein AURANDRAFT_6483 [Aureococcus anophagefferens] Length = 114 Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 38/64 (59%) Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 E++ + +RP + DGG++ G +V L + GAC CPS++ T+K G+ L +PE Sbjct: 11 ELILDELRPYLMSDGGNVRIAGIEGPVVKLELEGACGTCPSSTMTMKMGLERRLKEAIPE 70 Query: 183 VKDI 186 + D+ Sbjct: 71 ISDV 74 >gi|187250677|ref|YP_001875159.1| thioredoxin-like protein [Elusimicrobium minutum Pei191] gi|186970837|gb|ACC97822.1| Thioredoxin-like protein [Elusimicrobium minutum Pei191] Length = 74 Score = 53.9 bits (128), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 3/72 (4%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILN 177 +I+EV+ +++P + DGGD+ F + + G V++S++G C GCP+A TLK + + Sbjct: 4 KIEEVI-AKIKPVLQADGGDLEFVSFDENTGTVYVSLKGRCGGCPAAQMTLKAVIERKIM 62 Query: 178 HFVPEVKDIRTV 189 +PEVK + V Sbjct: 63 QEIPEVKAVERV 74 >gi|219120702|ref|XP_002181084.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217407800|gb|EEC47736.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 225 Score = 53.9 bits (128), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 43/66 (65%), Gaps = 1/66 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 ++ VLD +RP + +DGG+++ +V L ++GAC CPS+++T+K G+ L + Sbjct: 76 VEAVLDE-MRPYLIQDGGNVIISDIDGPVVKLELQGACGTCPSSTQTMKMGLERGLREKI 134 Query: 181 PEVKDI 186 PE++++ Sbjct: 135 PEIQEV 140 >gi|124360086|gb|ABN08102.1| Nitrogen-fixing NifU, C-terminal [Medicago truncatula] Length = 242 Score = 53.9 bits (128), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++VLD VRP + DGG++ +V L ++GAC CPS++ TLK G+ L Sbjct: 94 ENVEKVLDE-VRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRD 152 Query: 179 FVPEVKDIRTV 189 +PE+ ++ + Sbjct: 153 KIPEILEVEQI 163 >gi|294501686|ref|YP_003565386.1| NifU-like domain-containing protein [Bacillus megaterium QM B1551] gi|295707034|ref|YP_003600109.1| NifU-like domain-containing protein [Bacillus megaterium DSM 319] gi|294351623|gb|ADE71952.1| NifU-like domain protein [Bacillus megaterium QM B1551] gi|294804693|gb|ADF41759.1| NifU-like domain protein [Bacillus megaterium DSM 319] Length = 76 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 1/62 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 S + ++++EVL+ ++RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 2 SEMHEQVQEVLE-KLRPFLLRDGGDCELVDVEDGIVKLRLLGACGSCPSSTITLKAGIER 60 Query: 175 IL 176 L Sbjct: 61 AL 62 >gi|255632161|gb|ACU16433.1| unknown [Glycine max] Length = 221 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 2/67 (2%) Query: 124 VLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH-FVPE 182 VLD+ VRP + DGG++ DG+V L + GAC CPS++ T+ G+ +L F Sbjct: 81 VLDD-VRPYLIADGGNVDVVSVEDGVVSLRLEGACESCPSSTTTMTMGIERVLKEKFGDA 139 Query: 183 VKDIRTV 189 VKDIR V Sbjct: 140 VKDIRQV 146 >gi|313902071|ref|ZP_07835484.1| nitrogen-fixing NifU domain protein [Thermaerobacter subterraneus DSM 13965] gi|313467680|gb|EFR63181.1| nitrogen-fixing NifU domain protein [Thermaerobacter subterraneus DSM 13965] Length = 73 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +++++ L++ +RPA+ DGGDI +G+V + + GAC GCP + TLK G+ IL Sbjct: 3 EQVEQALES-IRPAIQMDGGDIELVDVDENGVVRVRLIGACVGCPMSIMTLKAGIERILR 61 Query: 178 HFVPEVKDIRTV 189 VP V D+ V Sbjct: 62 ERVPGVTDVEAV 73 >gi|255525728|ref|ZP_05392659.1| nitrogen-fixing NifU domain protein [Clostridium carboxidivorans P7] gi|296188013|ref|ZP_06856405.1| NifU-like domain protein [Clostridium carboxidivorans P7] gi|255510551|gb|EET86860.1| nitrogen-fixing NifU domain protein [Clostridium carboxidivorans P7] gi|296047139|gb|EFG86581.1| NifU-like domain protein [Clostridium carboxidivorans P7] Length = 73 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Query: 127 NRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKD 185 N++RP + RDGGD+ + DGIV + M+GAC CP A T+K + L VP VK+ Sbjct: 10 NKIRPMLQRDGGDVELVDVSSDGIVSVKMQGACGNCPGAMMTIKGVIEATLKEEVPGVKE 69 Query: 186 I 186 + Sbjct: 70 V 70 >gi|172035933|ref|YP_001802434.1| NifU-like protein [Cyanothece sp. ATCC 51142] gi|171697387|gb|ACB50368.1| NifU-like protein [Cyanothece sp. ATCC 51142] Length = 80 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 1/66 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 +++VLD +RP + DGG++ IV L ++GAC CPS++ TLK G+ L + Sbjct: 12 VEQVLDE-MRPYLMADGGNVELVEIEGPIVKLRLQGACGSCPSSTMTLKMGIERRLREMI 70 Query: 181 PEVKDI 186 PE+ ++ Sbjct: 71 PEIAEV 76 >gi|73749405|ref|YP_308644.1| nifU protein,-like protein [Dehalococcoides sp. CBDB1] gi|147670014|ref|YP_001214832.1| NifU domain-containing protein [Dehalococcoides sp. BAV1] gi|289433363|ref|YP_003463236.1| nitrogen-fixing NifU domain protein [Dehalococcoides sp. GT] gi|73661121|emb|CAI83728.1| nifU protein, homolog [Dehalococcoides sp. CBDB1] gi|146270962|gb|ABQ17954.1| nitrogen-fixing NifU domain protein [Dehalococcoides sp. BAV1] gi|288947083|gb|ADC74780.1| nitrogen-fixing NifU domain protein [Dehalococcoides sp. GT] Length = 72 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 49/70 (70%), Gaps = 1/70 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++++++ VLD ++RPA+ DGG++ DG+V + + GAC+GCP ++ TLK G+ IL Sbjct: 1 MLEKVEAVLD-KIRPALEADGGNVELVDVVDGVVKVKLVGACAGCPMSTMTLKNGIERIL 59 Query: 177 NHFVPEVKDI 186 +PE+K++ Sbjct: 60 KREIPEIKEV 69 >gi|303246717|ref|ZP_07332995.1| Fe-S cluster assembly protein NifU [Desulfovibrio fructosovorans JJ] gi|302492057|gb|EFL51935.1| Fe-S cluster assembly protein NifU [Desulfovibrio fructosovorans JJ] Length = 279 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V+R+ +V+D +RP + +DGGDI V +++RGAC GCP ++ TL V L Sbjct: 206 VKRVTQVMDEEIRPNLKKDGGDIELLDIEGKTVLVALRGACQGCPVSNVTLTEFVQKRLR 265 Query: 178 HFV 180 V Sbjct: 266 ELV 268 >gi|313897537|ref|ZP_07831079.1| NifU-like protein [Clostridium sp. HGF2] gi|312957489|gb|EFR39115.1| NifU-like protein [Clostridium sp. HGF2] Length = 76 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 1/59 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + IK+ ++ ++RP + RDGGD+ F + DGIV + + GAC GC S +T++ G+ IL Sbjct: 5 IDEIKQTIE-KIRPYIQRDGGDVEFVSFEDGIVGVRLLGACVGCMSIDDTIQGGIEAIL 62 >gi|224476033|ref|YP_002633639.1| hypothetical protein Sca_0540 [Staphylococcus carnosus subsp. carnosus TM300] gi|222420640|emb|CAL27454.1| hypothetical protein with NifU domain [Staphylococcus carnosus subsp. carnosus TM300] Length = 80 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 33/53 (62%) Query: 124 VLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V+ R+RP + RDGGD DGIV L + GAC+ CPS++ TLK G+ L Sbjct: 14 VVIERLRPFLLRDGGDCTLIDVEDGIVKLQLHGACNTCPSSTITLKAGIERAL 66 >gi|2183204|gb|AAC33371.1| NifU [Cyanothece sp. PCC 8801] Length = 294 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV-ANILNHF 179 I+++LD ++PA+A+DGGD+ +V + ++GAC C S+++TLK G+ A + Sbjct: 226 IQQILDEEIKPALAKDGGDVELFDVEGDLVKVILQGACGSCASSTQTLKMGIEARLRERV 285 Query: 180 VPEV 183 PE+ Sbjct: 286 SPEL 289 >gi|257059658|ref|YP_003137546.1| Fe-S cluster assembly protein NifU [Cyanothece sp. PCC 8802] gi|256589824|gb|ACV00711.1| Fe-S cluster assembly protein NifU [Cyanothece sp. PCC 8802] Length = 294 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV-ANILNHF 179 I+++LD ++PA+A+DGGD+ +V + ++GAC C S+++TLK G+ A + Sbjct: 226 IQQILDEEIKPALAKDGGDVELFDVEGDLVKVILQGACGSCASSTQTLKMGIEARLRERV 285 Query: 180 VPEV 183 PE+ Sbjct: 286 SPEL 289 >gi|225437626|ref|XP_002278510.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297744011|emb|CBI36981.3| unnamed protein product [Vitis vinifera] Length = 213 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH-FVPEVKDIR 187 VRP + DGG++ DG++ L ++GAC CPS++ T+ G+ +L F VKDIR Sbjct: 79 VRPYLISDGGNVDVVSVEDGVISLKLQGACGSCPSSTTTMTMGIERVLKEKFGDAVKDIR 138 Query: 188 TV 189 V Sbjct: 139 QV 140 >gi|300785684|ref|YP_003765975.1| thioredoxin-like protein [Amycolatopsis mediterranei U32] gi|299795198|gb|ADJ45573.1| thioredoxin-like protein [Amycolatopsis mediterranei U32] Length = 172 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +R+ E LD +VRP + GD+ F DG++ L ++G C GCPS++ T KY + ++ Sbjct: 78 ERVTEALD-KVRPYLGSHAGDVEFVEIADGVLRLRLQGTCDGCPSSTVTAKYAIERVVRE 136 Query: 179 FVP 181 P Sbjct: 137 AAP 139 >gi|225446006|ref|XP_002268218.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297735420|emb|CBI17860.3| unnamed protein product [Vitis vinifera] Length = 237 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++VLD VRP + DGG++ +V L ++GAC CPS++ TLK G+ L Sbjct: 88 ENVEKVLDE-VRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRD 146 Query: 179 FVPEVKDIRTV 189 +PE++ + + Sbjct: 147 KIPEIEAVEQI 157 >gi|218246615|ref|YP_002371986.1| Fe-S cluster assembly protein NifU [Cyanothece sp. PCC 8801] gi|218167093|gb|ACK65830.1| Fe-S cluster assembly protein NifU [Cyanothece sp. PCC 8801] Length = 294 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV-ANILNHF 179 I+++LD ++PA+A+DGGD+ +V + ++GAC C S+++TLK G+ A + Sbjct: 226 IQQILDEEIKPALAKDGGDVELFDVEGDLVKVILQGACGSCASSTQTLKMGIEARLRERV 285 Query: 180 VPEV 183 PE+ Sbjct: 286 SPEL 289 >gi|172058330|ref|YP_001814790.1| NifU domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171990851|gb|ACB61773.1| nitrogen-fixing NifU domain protein [Exiguobacterium sibiricum 255-15] Length = 75 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 1/57 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++ EVL+ ++RP + RDGGD+ DGIV L + GAC CPS++ TLK G+ L Sbjct: 6 QVNEVLE-KLRPFLLRDGGDVELVDVEDGIVKLRLMGACGSCPSSTITLKAGIERAL 61 >gi|119511776|ref|ZP_01630878.1| Nitrogen-fixing NifU-like protein [Nodularia spumigena CCY9414] gi|119463549|gb|EAW44484.1| Nitrogen-fixing NifU-like protein [Nodularia spumigena CCY9414] Length = 76 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD +RP + DGG++ IV L ++GAC CPS++ TL+ G+ L Sbjct: 6 ENVETVLDE-MRPYLMSDGGNVELVELDGPIVKLRLQGACGSCPSSAMTLRMGIERRLKE 64 Query: 179 FVPEVKDIRTV 189 +PE+ +I V Sbjct: 65 MIPEIAEIEQV 75 >gi|312144147|ref|YP_003995593.1| nitrogen-fixing NifU domain protein [Halanaerobium sp. 'sapolanicus'] gi|311904798|gb|ADQ15239.1| nitrogen-fixing NifU domain protein [Halanaerobium sp. 'sapolanicus'] Length = 73 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 47/72 (65%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + +++ LD ++RP++ DGGD+ + + +GIV + + GACSGCP ++ T+K G+ L Sbjct: 3 EEVQKYLD-KIRPSLQADGGDVELVEVTEEGIVKVKLLGACSGCPMSTLTIKNGIERTLK 61 Query: 178 HFVPEVKDIRTV 189 V VK+++ V Sbjct: 62 QNVDGVKEVQPV 73 >gi|302340763|ref|YP_003805969.1| nitrogen-fixing NifU domain protein [Spirochaeta smaragdinae DSM 11293] gi|301637948|gb|ADK83375.1| nitrogen-fixing NifU domain protein [Spirochaeta smaragdinae DSM 11293] Length = 77 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++K+ + + +RP++ DGGDI +G V + + GAC+GCP A TLK GV L Sbjct: 8 KVKKAIQD-IRPSLQADGGDIELVTVGENGKVSVRLTGACNGCPMAQITLKQGVERYLKE 66 Query: 179 FVPEVKDIRTV 189 +PE+K + V Sbjct: 67 TIPEIKSVDAV 77 >gi|254786162|ref|YP_003073591.1| gluconate transport associated thioredoxin-like protein YhgI [Teredinibacter turnerae T7901] gi|259511746|sp|C5BJC0|NFUA_TERTT RecName: Full=Fe/S biogenesis protein nfuA gi|237684627|gb|ACR11891.1| putative gluconate transport associated thioredoxin-like protein YhgI [Teredinibacter turnerae T7901] Length = 194 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 1/80 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 I DS + +I VL N V P +A GG++ + D G+ L G C GC + TLK Sbjct: 104 ISDDSPIEDKINYVLYNEVNPGLASHGGNVSLERLTDDGMAILRFGGGCQGCSAVDMTLK 163 Query: 170 YGVANILNHFVPEVKDIRTV 189 GV L +PE+ +R V Sbjct: 164 QGVEKTLMERIPELAGVRDV 183 >gi|159474062|ref|XP_001695148.1| iron-sulfur cluster assembly protein [Chlamydomonas reinhardtii] gi|158276082|gb|EDP01856.1| iron-sulfur cluster assembly protein [Chlamydomonas reinhardtii] Length = 154 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++VLD VRP + DGG++ F +V L ++GAC CPS++ T+ G+ L Sbjct: 7 ENVEKVLD-EVRPYLMADGGNVEFMEIDGLVVKLKLQGACGSCPSSTTTMTMGIKRRLME 65 Query: 179 FVPEVKDIRTV 189 +PE+ D+ V Sbjct: 66 RIPEILDVEQV 76 >gi|110004115|emb|CAK98454.1| hypothetical nitrogen fixation protein [Spiroplasma citri] Length = 75 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%) Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP 181 K+++DN +RP + +DGGDI F ++ IV++ + GAC GC T+K GV I+ +P Sbjct: 8 KDIIDN-LRPYINQDGGDIEFVEVKNNIVYVRLAGACVGCGLIDSTIKDGVEQIVKQEMP 66 Query: 182 EV 183 ++ Sbjct: 67 DI 68 >gi|72383588|ref|YP_292943.1| NifU-like protein [Prochlorococcus marinus str. NATL2A] gi|124025184|ref|YP_001014300.1| NifU-like protein [Prochlorococcus marinus str. NATL1A] gi|72003438|gb|AAZ59240.1| NifU-like protein [Prochlorococcus marinus str. NATL2A] gi|123960252|gb|ABM75035.1| NifU-like protein [Prochlorococcus marinus str. NATL1A] Length = 81 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + + +++VLD +RP + DGG++ IV + ++GAC CPS++ TLK G Sbjct: 4 ETLALTTENVEKVLDE-LRPFLMADGGNVEIAEIDGPIVKVRLQGACGSCPSSTMTLKMG 62 Query: 172 VANILNHFVPEVKDI 186 + L +PEV ++ Sbjct: 63 IERKLREMIPEVSEV 77 >gi|302770961|ref|XP_002968899.1| hypothetical protein SELMODRAFT_16556 [Selaginella moellendorffii] gi|300163404|gb|EFJ30015.1| hypothetical protein SELMODRAFT_16556 [Selaginella moellendorffii] Length = 170 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 6/86 (6%) Query: 106 GSGDF-IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSA 164 GSG + E+ + + +VLD VRP + DGG++ DG V L ++GAC CPS+ Sbjct: 19 GSGLYSTETYDFTAENVDKVLD-EVRPYLVADGGNVAVVSVADGTVSLELQGACGTCPSS 77 Query: 165 SETLKYGVANILNH----FVPEVKDI 186 + T+K G+ +L V EV DI Sbjct: 78 TSTMKMGIERVLREKFGDAVKEVVDI 103 >gi|298492022|ref|YP_003722199.1| nitrogen-fixing NifU domain-containing protein ['Nostoc azollae' 0708] gi|298233940|gb|ADI65076.1| nitrogen-fixing NifU domain protein ['Nostoc azollae' 0708] Length = 79 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++ ++ VLD +RP + DGG++ IV L ++GAC CPS++ TL+ G+ L Sbjct: 8 LENVETVLDE-MRPYLMSDGGNVEVVELDGPIVKLRLQGACGSCPSSAMTLRMGIERRLK 66 Query: 178 HFVPEVKDIRTV 189 +PE+ +I V Sbjct: 67 ELIPEIAEIEQV 78 >gi|332702422|ref|ZP_08422510.1| Fe-S cluster assembly protein NifU [Desulfovibrio africanus str. Walvis Bay] gi|332552571|gb|EGJ49615.1| Fe-S cluster assembly protein NifU [Desulfovibrio africanus str. Walvis Bay] Length = 285 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 2/64 (3%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASETLKYGVANIL 176 +Q + +V+D +RP++ +DGGDI DG+ V +S+RGAC GCPSA TLK V L Sbjct: 213 MQLVSKVIDEEIRPSLKKDGGDIELIDI-DGLNVVVSLRGACVGCPSAQLTLKQLVERRL 271 Query: 177 NHFV 180 V Sbjct: 272 RETV 275 >gi|222823154|ref|YP_002574727.1| NifU family protein [Campylobacter lari RM2100] gi|222538375|gb|ACM63476.1| conserved hypothetical protein, NifU family protein [Campylobacter lari RM2100] Length = 91 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 1/64 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD +++ +K L + + DGG + F G ++G+V++ + GAC GCPS+ TLKYG+ Sbjct: 6 SDEELIEPVKASLAKTMH-ILENDGGGLDFLGVKNGVVYVKLTGACHGCPSSGTTLKYGL 64 Query: 173 ANIL 176 L Sbjct: 65 EKQL 68 >gi|302784600|ref|XP_002974072.1| hypothetical protein SELMODRAFT_58377 [Selaginella moellendorffii] gi|300158404|gb|EFJ25027.1| hypothetical protein SELMODRAFT_58377 [Selaginella moellendorffii] Length = 162 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 6/86 (6%) Query: 106 GSGDF-IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSA 164 GSG + E+ + + +VLD VRP + DGG++ DG V L ++GAC CPS+ Sbjct: 8 GSGLYSAETYDFTAENVDKVLD-EVRPYLVADGGNVAVVSVADGTVSLELQGACGTCPSS 66 Query: 165 SETLKYGVANILNH----FVPEVKDI 186 + T+K G+ +L V EV DI Sbjct: 67 TSTMKMGIERVLREKFGDAVKEVVDI 92 >gi|226503511|ref|NP_001150793.1| NFU3 [Zea mays] gi|195641898|gb|ACG40417.1| NFU3 [Zea mays] Length = 213 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++VLD VRP++ DGG++ +V L ++GAC CPS++ TLK G+ L Sbjct: 65 ENVEKVLDE-VRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRD 123 Query: 179 FVPEVKDIRTV 189 +P++ ++ + Sbjct: 124 KIPDILEVEQI 134 >gi|78778799|ref|YP_396911.1| NifU-like protein [Prochlorococcus marinus str. MIT 9312] gi|123968006|ref|YP_001008864.1| NifU-like protein [Prochlorococcus marinus str. AS9601] gi|126695776|ref|YP_001090662.1| NifU-like protein [Prochlorococcus marinus str. MIT 9301] gi|157412831|ref|YP_001483697.1| NifU-like protein [Prochlorococcus marinus str. MIT 9215] gi|254525524|ref|ZP_05137576.1| NifU domain protein [Prochlorococcus marinus str. MIT 9202] gi|78712298|gb|ABB49475.1| NifU-like protein [Prochlorococcus marinus str. MIT 9312] gi|91070321|gb|ABE11238.1| NifU-like protein [uncultured Prochlorococcus marinus clone HF10-88F10] gi|123198116|gb|ABM69757.1| NifU-like protein [Prochlorococcus marinus str. AS9601] gi|126542819|gb|ABO17061.1| NifU-like protein [Prochlorococcus marinus str. MIT 9301] gi|157387406|gb|ABV50111.1| NifU-like protein [Prochlorococcus marinus str. MIT 9215] gi|221536948|gb|EEE39401.1| NifU domain protein [Prochlorococcus marinus str. MIT 9202] Length = 81 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ S + +++VLD +RP + DGG++ IV + ++GAC CPS++ TLK G Sbjct: 4 ETLSLTNENVEKVLD-ELRPFLISDGGNVEIAEIDGPIVKVRLQGACGSCPSSTMTLKMG 62 Query: 172 VANILNHFVPEVKDIRTV 189 + L +PE+ ++ V Sbjct: 63 IERKLKEMIPEISEVVQV 80 >gi|218282608|ref|ZP_03488846.1| hypothetical protein EUBIFOR_01432 [Eubacterium biforme DSM 3989] gi|218216479|gb|EEC90017.1| hypothetical protein EUBIFOR_01432 [Eubacterium biforme DSM 3989] Length = 79 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILN 177 + + + LD ++RP + DGGDI G + +V++S +GAC GC ASE G+ +L Sbjct: 8 KAVNDCLD-KIRPYIQHDGGDIELLGVDEFNVVYVSFKGACQGCMMASEDFSSGIKELLL 66 Query: 178 HFVPEVKDIRTV 189 VP ++D+ V Sbjct: 67 EEVPNIRDVVLV 78 >gi|22298836|ref|NP_682083.1| NifU protein [Thermosynechococcus elongatus BP-1] gi|22295017|dbj|BAC08845.1| tsl1293 [Thermosynechococcus elongatus BP-1] Length = 89 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++VLD +RP + DGG++ +V L ++GAC CPS++ TL+ G+ L Sbjct: 19 ENVEKVLDE-LRPYLMADGGNVELVEIEGPVVRLRLQGACGACPSSTMTLRMGIERKLKE 77 Query: 179 FVPEVKDIRTV 189 +PE+ +++ V Sbjct: 78 SIPEIAEVQQV 88 >gi|317121652|ref|YP_004101655.1| nitrogen-fixing NifU domain protein [Thermaerobacter marianensis DSM 12885] gi|315591632|gb|ADU50928.1| nitrogen-fixing NifU domain protein [Thermaerobacter marianensis DSM 12885] Length = 73 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Query: 129 VRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 +RPA+ DGGDI +G+V + + GAC GCP + TLK G+ IL VP V D+ Sbjct: 12 IRPAIQMDGGDIELVDVDENGVVRVRLIGACVGCPMSIMTLKAGIERILRERVPGVTDVE 71 Query: 188 TV 189 V Sbjct: 72 AV 73 >gi|226493520|ref|NP_001152596.1| LOC100286236 [Zea mays] gi|195657915|gb|ACG48425.1| NFU3 [Zea mays] Length = 221 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + + VLD+ VRP + DGG++ DG++ L + GAC CPS++ T+ G+ +L Sbjct: 76 ENVDRVLDD-VRPYLISDGGNVTVVAVEDGVISLKLEGACGSCPSSTTTMNMGIERVLKE 134 Query: 179 -FVPEVKDIRTV 189 F K+IR V Sbjct: 135 KFGDAFKEIRQV 146 >gi|300867628|ref|ZP_07112276.1| nitrogen-fixing NifU-like [Oscillatoria sp. PCC 6506] gi|300334389|emb|CBN57446.1| nitrogen-fixing NifU-like [Oscillatoria sp. PCC 6506] Length = 79 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++VLD +RP + DGG++ +V L ++GAC CPS++ TL+ G+ L Sbjct: 9 ENVEQVLDE-LRPYLMSDGGNVELVEIEGPVVQLRLQGACGSCPSSAMTLRMGIERRLRE 67 Query: 179 FVPEVKDIRTV 189 +PE+ ++ V Sbjct: 68 TIPEIAEVEQV 78 >gi|242094042|ref|XP_002437511.1| hypothetical protein SORBIDRAFT_10g028390 [Sorghum bicolor] gi|241915734|gb|EER88878.1| hypothetical protein SORBIDRAFT_10g028390 [Sorghum bicolor] Length = 240 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++VLD VRP++ DGG++ +V L ++GAC CPS++ TLK G+ L Sbjct: 92 ENVEKVLDE-VRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRD 150 Query: 179 FVPEVKDIRTV 189 +P++ ++ + Sbjct: 151 KIPDILEVEQI 161 >gi|223993177|ref|XP_002286272.1| nifU like protein [Thalassiosira pseudonana CCMP1335] gi|220977587|gb|EED95913.1| nifU like protein [Thalassiosira pseudonana CCMP1335] Length = 237 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 71/140 (50%), Gaps = 8/140 (5%) Query: 52 ASVYFGY----DFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNG-GLGDMKLDDMG 106 A++ FG+ + I++ ++ RP + I+ F + + +G G+ +G Sbjct: 17 AAMAFGHHGARNHISLSTRRHSPFSTRPQLRMTIVSPFDNTEDSDESGEGVATATYTSLG 76 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 S D E + + VL+ +RP + +DGG++ IV L ++GAC CPS+++ Sbjct: 77 SDD--EPLDLTWENVDMVLE-EMRPFLLQDGGNVAISEIDGPIVKLELQGACGTCPSSTQ 133 Query: 167 TLKYGVANILNHFVPEVKDI 186 T+K G+ L +PE++++ Sbjct: 134 TMKMGLERKLRERIPEIQEV 153 >gi|299139675|ref|ZP_07032848.1| nitrogen-fixing NifU domain protein [Acidobacterium sp. MP5ACTX8] gi|298598299|gb|EFI54464.1| nitrogen-fixing NifU domain protein [Acidobacterium sp. MP5ACTX8] Length = 197 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 32/58 (55%) Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 VRP + GGD G +GIV L + G C CPS+S TLK V L P++K+I Sbjct: 122 VRPYLQEHGGDCELAGLDNGIVRLRLHGNCGSCPSSSLTLKNAVEEALFQAAPDIKEI 179 >gi|257456257|ref|ZP_05621454.1| NifU-like domain protein [Treponema vincentii ATCC 35580] gi|257446343|gb|EEV21389.1| NifU-like domain protein [Treponema vincentii ATCC 35580] Length = 75 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANIL 176 V +K+ LD VRP + DGGD+ F D G+V + ++GAC CP A TLK G+ L Sbjct: 4 VDEVKQALDV-VRPHLQADGGDVEFVSLSDDGVVSVRLKGACGSCPVALMTLKSGIEAQL 62 Query: 177 NHFVPEVKDIRTV 189 P++K + ++ Sbjct: 63 KESYPDIKKVVSI 75 >gi|332707425|ref|ZP_08427474.1| thioredoxin-like protein [Lyngbya majuscula 3L] gi|332353776|gb|EGJ33267.1| thioredoxin-like protein [Lyngbya majuscula 3L] Length = 80 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + + ++ VLD +RP + DGG++ V L ++GAC CPS++ TL+ G Sbjct: 3 ETMALTPENVETVLDE-MRPYLMADGGNVELVELDGPTVKLRLQGACGSCPSSTMTLRMG 61 Query: 172 VANILNHFVPEVKDIRTV 189 + L F+PE+ ++ V Sbjct: 62 IERRLKEFIPEILEVEQV 79 >gi|115469688|ref|NP_001058443.1| Os06g0694500 [Oryza sativa Japonica Group] gi|53791826|dbj|BAD53892.1| putative Nuclear-encoded plastid gene, NifU1 [Oryza sativa Japonica Group] gi|53792847|dbj|BAD53880.1| putative Nuclear-encoded plastid gene, NifU1 [Oryza sativa Japonica Group] gi|113596483|dbj|BAF20357.1| Os06g0694500 [Oryza sativa Japonica Group] gi|215678926|dbj|BAG96356.1| unnamed protein product [Oryza sativa Japonica Group] gi|215695250|dbj|BAG90441.1| unnamed protein product [Oryza sativa Japonica Group] gi|218198813|gb|EEC81240.1| hypothetical protein OsI_24300 [Oryza sativa Indica Group] gi|222636145|gb|EEE66277.1| hypothetical protein OsJ_22478 [Oryza sativa Japonica Group] Length = 219 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD +VRP++ DGG++ +V L ++GAC CPS++ TLK G+ L Sbjct: 71 ENVEMVLD-QVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRD 129 Query: 179 FVPEV 183 +PE+ Sbjct: 130 KIPEI 134 >gi|223948699|gb|ACN28433.1| unknown [Zea mays] Length = 221 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + + VLD+ VRP + DGG++ DG++ L + GAC CPS++ T+ G+ +L Sbjct: 76 ENVDRVLDD-VRPYLISDGGNVTVVAVEDGVISLKLEGACGSCPSSTTTMNMGIERVLKE 134 Query: 179 -FVPEVKDIRTV 189 F K+IR V Sbjct: 135 KFGDAFKEIRQV 146 >gi|242041121|ref|XP_002467955.1| hypothetical protein SORBIDRAFT_01g037130 [Sorghum bicolor] gi|241921809|gb|EER94953.1| hypothetical protein SORBIDRAFT_01g037130 [Sorghum bicolor] Length = 222 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + + VLD+ VRP + DGG++ DG++ L + GAC CPS++ T+ G+ +L Sbjct: 77 ENVDRVLDD-VRPYLISDGGNVTVVAVEDGVISLKLEGACGSCPSSTTTMNMGIERVLKE 135 Query: 179 -FVPEVKDIRTV 189 F K+IR V Sbjct: 136 KFGDAFKEIRQV 147 >gi|226363961|ref|YP_002781743.1| hypothetical protein ROP_45510 [Rhodococcus opacus B4] gi|226242450|dbj|BAH52798.1| hypothetical protein [Rhodococcus opacus B4] Length = 278 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V R+ LD+ VRP + GGD+ G DG+V L + G+C CPS++ TL+ V + + Sbjct: 59 VETRVATALDS-VRPYLGSHGGDVELLGVVDGVVRLRLTGSCKSCPSSAVTLELAVKDAV 117 Query: 177 NHFVPEVKDIRTV 189 PE DI V Sbjct: 118 LAAAPETVDIEVV 130 >gi|221311164|ref|ZP_03593011.1| hypothetical protein Bsubs1_17486 [Bacillus subtilis subsp. subtilis str. 168] gi|221315491|ref|ZP_03597296.1| hypothetical protein BsubsN3_17402 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320406|ref|ZP_03601700.1| hypothetical protein BsubsJ_17365 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324690|ref|ZP_03605984.1| hypothetical protein BsubsS_17516 [Bacillus subtilis subsp. subtilis str. SMY] gi|296331794|ref|ZP_06874261.1| putative iron-sulfur scaffold protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675816|ref|YP_003867488.1| putative iron-sulfur scaffold protein [Bacillus subtilis subsp. spizizenii str. W23] gi|311069717|ref|YP_003974640.1| putative iron-sulfur scaffold protein [Bacillus atrophaeus 1942] gi|321312766|ref|YP_004205053.1| putative iron-sulfur scaffold protein [Bacillus subtilis BSn5] gi|291485686|dbj|BAI86761.1| hypothetical protein BSNT_04769 [Bacillus subtilis subsp. natto BEST195] gi|296151119|gb|EFG92001.1| putative iron-sulfur scaffold protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414060|gb|ADM39179.1| putative iron-sulfur scaffold protein [Bacillus subtilis subsp. spizizenii str. W23] gi|310870234|gb|ADP33709.1| putative iron-sulfur scaffold protein [Bacillus atrophaeus 1942] gi|320019040|gb|ADV94026.1| putative iron-sulfur scaffold protein [Bacillus subtilis BSn5] Length = 78 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 1/58 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++++EVLD ++RP + RDGGD +GIV L + GAC CPS++ TLK G+ L Sbjct: 8 EQVQEVLD-KLRPFLLRDGGDCELVDVDEGIVKLRLLGACGSCPSSTITLKAGIERAL 64 >gi|308174916|ref|YP_003921621.1| iron-sulfur scaffold protein [Bacillus amyloliquefaciens DSM 7] gi|307607780|emb|CBI44151.1| putative iron-sulfur scaffold protein [Bacillus amyloliquefaciens DSM 7] gi|328554923|gb|AEB25415.1| iron-sulfur scaffold protein [Bacillus amyloliquefaciens TA208] gi|328913234|gb|AEB64830.1| Putative nitrogen fixation protein yutI [Bacillus amyloliquefaciens LL3] Length = 78 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 1/58 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++++EVLD ++RP + RDGGD +GIV L + GAC CPS++ TLK G+ L Sbjct: 8 EQVQEVLD-KLRPFLLRDGGDCELVDIDEGIVKLRLLGACGSCPSSTITLKAGIERAL 64 >gi|307153189|ref|YP_003888573.1| nitrogen-fixing NifU domain-containing protein [Cyanothece sp. PCC 7822] gi|306983417|gb|ADN15298.1| nitrogen-fixing NifU domain protein [Cyanothece sp. PCC 7822] Length = 78 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 ++ VLD +RP + DGG++ IV L ++GAC CPS++ TLK G+ L ++ Sbjct: 10 VETVLDE-MRPYLMADGGNVELVEIDGPIVKLRLQGACGSCPSSTMTLKMGIERRLREYI 68 Query: 181 PEVKDIRTV 189 PE+ ++ V Sbjct: 69 PEIVEVEQV 77 >gi|315639115|ref|ZP_07894282.1| NifU family protein [Campylobacter upsaliensis JV21] gi|315480819|gb|EFU71456.1| NifU family protein [Campylobacter upsaliensis JV21] Length = 90 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 2/75 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD ++ +K+ L+ + P + RDGG + F G ++G+V++ + GAC GC S+ TLKY + Sbjct: 5 SDEELINPVKKSLEKSL-PILERDGGGLEFLGVKNGVVYVHLIGACKGCASSGITLKYSL 63 Query: 173 ANILNHFV-PEVKDI 186 L + PE+ I Sbjct: 64 ERQLKMDIHPEISII 78 >gi|220907447|ref|YP_002482758.1| nitrogen-fixing NifU domain-containing protein [Cyanothece sp. PCC 7425] gi|219864058|gb|ACL44397.1| nitrogen-fixing NifU domain protein [Cyanothece sp. PCC 7425] Length = 76 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 1/69 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 +++VLD +RP + DGG++ IV L ++GAC CPS++ TL+ G+ L + Sbjct: 8 VEKVLDE-LRPYLMADGGNVELVELEGPIVRLRLQGACGSCPSSTMTLRMGIERKLRESI 66 Query: 181 PEVKDIRTV 189 PE+ ++ V Sbjct: 67 PEIAEVEQV 75 >gi|154687334|ref|YP_001422495.1| YutI [Bacillus amyloliquefaciens FZB42] gi|154353185|gb|ABS75264.1| YutI [Bacillus amyloliquefaciens FZB42] Length = 86 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 G + ++ + ++++EVLD ++RP + RDGGD +GIV L + GAC CPS++ Sbjct: 4 KGANLMTEVEMKEQVQEVLD-KLRPFLLRDGGDCELVDVDEGIVKLRLLGACGSCPSSTI 62 Query: 167 TLKYGVANIL 176 TLK G+ L Sbjct: 63 TLKAGIERAL 72 >gi|126660171|ref|ZP_01731289.1| putative NifU-like protein [Cyanothece sp. CCY0110] gi|126618536|gb|EAZ89287.1| putative NifU-like protein [Cyanothece sp. CCY0110] Length = 80 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 ++ VLD +RP + DGG++ IV L ++GAC CPS++ TLK G+ L + Sbjct: 12 VETVLDE-MRPYLMADGGNVELVEIEGPIVKLRLQGACGSCPSSTMTLKMGIERRLREMI 70 Query: 181 PEVKDI 186 PE+ ++ Sbjct: 71 PEIAEV 76 >gi|119503957|ref|ZP_01626038.1| hypothetical protein MGP2080_09413 [marine gamma proteobacterium HTCC2080] gi|119459960|gb|EAW41054.1| hypothetical protein MGP2080_09413 [marine gamma proteobacterium HTCC2080] Length = 191 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 ++ DS + RI VL N V P++A GG++ + + D + L G C GC + S TLK Sbjct: 101 VDVDSPIEDRINYVLYNEVNPSLAAHGGEVSLVEITDDALAILRFGGGCQGCSAVSMTLK 160 Query: 170 YGVANILNHFVPEVKDIRTV 189 GV L VPE+ +R V Sbjct: 161 DGVEKTLLEQVPELSGVRDV 180 >gi|284053033|ref|ZP_06383243.1| nitrogen-fixing NifU domain protein [Arthrospira platensis str. Paraca] gi|291566311|dbj|BAI88583.1| iron-sulfur cluster assembly factor [Arthrospira platensis NIES-39] Length = 79 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD +RP + DGG++ IV L ++GAC CPS++ TLK G+ L Sbjct: 9 ENVETVLDE-LRPYLMADGGNVEIVELDGPIVRLRLQGACGSCPSSTMTLKMGIERRLRE 67 Query: 179 FVPEVKDIRTV 189 +PE+ ++ +V Sbjct: 68 KIPEIAEVESV 78 >gi|256827631|ref|YP_003151590.1| thioredoxin-like protein [Cryptobacterium curtum DSM 15641] gi|256583774|gb|ACU94908.1| thioredoxin-like protein [Cryptobacterium curtum DSM 15641] Length = 75 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%) Query: 129 VRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 VRP++ DGGD+ + DG V + ++GAC GCP + TL +G+ IL VP V+ + Sbjct: 14 VRPSLQADGGDVRLVDVMEDGTVTVELQGACQGCPMSQMTLAHGIERILKDRVPGVQQV 72 >gi|197119169|ref|YP_002139596.1| thioredoxin/NifU-like domain-containing protein [Geobacter bemidjiensis Bem] gi|197088529|gb|ACH39800.1| thioredoxin/NifU-like domain protein [Geobacter bemidjiensis Bem] Length = 73 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + +K +L+ ++RPA+ DGGD+ + + DGIV + + GAC CP ++ TLK G+ + Sbjct: 3 EEVKAILE-QIRPALQADGGDVELVEVTDDGIVKVRLVGACGHCPMSTMTLKMGIERTIK 61 Query: 178 HFVPEVKDIRTV 189 VP +K++ V Sbjct: 62 EKVPGIKEVVAV 73 >gi|16080275|ref|NP_391102.1| iron-sulfur scaffold protein [Bacillus subtilis subsp. subtilis str. 168] gi|81342154|sp|O32119|YUTI_BACSU RecName: Full=Putative nitrogen fixation protein yutI gi|2635719|emb|CAB15212.1| putative iron-sulfur scaffold protein [Bacillus subtilis subsp. subtilis str. 168] Length = 111 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 G + ++ + ++++EVLD ++RP + RDGGD +GIV L + GAC CPS++ Sbjct: 29 KGANVMTEVEMKEQVQEVLD-KLRPFLLRDGGDCELVDVDEGIVKLRLLGACGSCPSSTI 87 Query: 167 TLKYGVANIL 176 TLK G+ L Sbjct: 88 TLKAGIERAL 97 >gi|239906346|ref|YP_002953087.1| nitrogen fixation protein NifU [Desulfovibrio magneticus RS-1] gi|239796212|dbj|BAH75201.1| nitrogen fixation protein NifU [Desulfovibrio magneticus RS-1] Length = 281 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 35/60 (58%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 + +V++ +RP + +DGGDI VF+S+RGAC GCPS++ TL V L V Sbjct: 212 VTKVMEEEIRPNLKKDGGDIELVDIDGQTVFVSLRGACKGCPSSNVTLTEFVQKRLQELV 271 >gi|268317872|ref|YP_003291591.1| nitrogen-fixing NifU domain-containing protein [Rhodothermus marinus DSM 4252] gi|262335406|gb|ACY49203.1| nitrogen-fixing NifU domain protein [Rhodothermus marinus DSM 4252] Length = 96 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 2/84 (2%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSAS 165 +G D + +RI+E LD +RP + DGG + + D +V L + GAC CP + Sbjct: 10 TGPLAPDDPELHRRIEEALDM-IRPYLMTDGGSVRLLNVTEDYVVELELLGACGTCPMSL 68 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TL+ G+ +L VPE+ + V Sbjct: 69 MTLRAGIEQVLKRAVPEITRVEAV 92 >gi|123965714|ref|YP_001010795.1| NifU-like protein [Prochlorococcus marinus str. MIT 9515] gi|123200080|gb|ABM71688.1| NifU-like protein [Prochlorococcus marinus str. MIT 9515] Length = 81 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++VLD +RP + DGG++ IV + ++GAC CPS++ TLK G+ L Sbjct: 11 ENVEKVLD-ELRPFLISDGGNVEIAEIDGPIVKVRLQGACGSCPSSTMTLKMGIERKLKE 69 Query: 179 FVPEVKDIRTV 189 +PE+ ++ V Sbjct: 70 MIPEISEVVQV 80 >gi|295107477|emb|CBL05020.1| Thioredoxin-like proteins and domains [Gordonibacter pamelaeae 7-10-1-b] Length = 78 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Query: 129 VRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 +RP++ DGGD+ F DG+V + ++GAC GCP + TL GV IL VP V + Sbjct: 14 IRPSLQADGGDVRFVDVDEDGVVSVELQGACKGCPMSEMTLANGVERILKERVPGVTKVV 73 Query: 188 TV 189 V Sbjct: 74 AV 75 >gi|209523451|ref|ZP_03272006.1| nitrogen-fixing NifU domain protein [Arthrospira maxima CS-328] gi|209496193|gb|EDZ96493.1| nitrogen-fixing NifU domain protein [Arthrospira maxima CS-328] Length = 79 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD +RP + DGG++ IV L ++GAC CPS++ TLK G+ L Sbjct: 9 ENVETVLDE-LRPYLMADGGNVEVVELDGPIVRLRLQGACGSCPSSTMTLKMGIERRLRE 67 Query: 179 FVPEVKDIRTV 189 +PE+ ++ +V Sbjct: 68 RIPEIAEVESV 78 >gi|186681985|ref|YP_001865181.1| NifU domain-containing protein [Nostoc punctiforme PCC 73102] gi|186464437|gb|ACC80238.1| nitrogen-fixing NifU domain protein [Nostoc punctiforme PCC 73102] Length = 76 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + ++ VLD +RP + DGG++ +V L ++GAC CPS++ TL+ G+ L Sbjct: 5 IDNVETVLDE-MRPYLMSDGGNVELVELDGPVVKLRLQGACGSCPSSAMTLRMGIERRLK 63 Query: 178 HFVPEVKDIRTV 189 +PE+ +I V Sbjct: 64 EMIPEIAEIEQV 75 >gi|158334696|ref|YP_001515868.1| NifU domain-containing protein [Acaryochloris marina MBIC11017] gi|158304937|gb|ABW26554.1| NifU domain protein [Acaryochloris marina MBIC11017] Length = 80 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD +RP + DGG++ +V L ++GAC CPS++ TLK G+ L Sbjct: 10 ENVETVLDE-LRPYLMADGGNVELVEVEGPVVKLRLQGACGSCPSSAMTLKMGIERKLRD 68 Query: 179 FVPEVKDIRTV 189 +PE+ ++ V Sbjct: 69 TIPEIAEVEQV 79 >gi|289548959|ref|YP_003473947.1| nitrogen-fixing NifU domain protein [Thermocrinis albus DSM 14484] gi|289182576|gb|ADC89820.1| nitrogen-fixing NifU domain protein [Thermocrinis albus DSM 14484] Length = 85 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + I+ VLD +RPA+ DGGD+ + DG V + M GAC+GC + TLK G+ L Sbjct: 5 EEIEAVLDE-IRPALRFDGGDVELVDVLEDGTVLVRMIGACAGCGMSVLTLKAGIERALK 63 Query: 178 HFVPEVKDIRTV 189 P++K+++ V Sbjct: 64 SRFPDIKEVKDV 75 >gi|225850623|ref|YP_002730857.1| hypothetical protein PERMA_1071 [Persephonella marina EX-H1] gi|225646187|gb|ACO04373.1| conserved domain protein [Persephonella marina EX-H1] Length = 89 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 Q ++EVL N++RPA+A D G+I + V+L + GACS CP T+ + + H Sbjct: 10 QEVEEVL-NKIRPALALDQGNIKLIKVENNDVYLELLGACSTCPVPDITMNDVIITTIKH 68 Query: 179 FVPEVKDIR 187 +P V+ + Sbjct: 69 LLPWVETVH 77 >gi|304408198|ref|ZP_07389847.1| nitrogen-fixing NifU domain protein [Paenibacillus curdlanolyticus YK9] gi|304342886|gb|EFM08731.1| nitrogen-fixing NifU domain protein [Paenibacillus curdlanolyticus YK9] Length = 81 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 2/56 (3%) Query: 123 EVLD--NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 EVLD +++RP + RDGGD+ +GIV L + GAC CPS++ TLK G+ L Sbjct: 12 EVLDVLDKLRPFLQRDGGDVELVDVEEGIVKLRLVGACGSCPSSTITLKAGIERAL 67 >gi|317494418|ref|ZP_07952832.1| IscR-regulated protein YhgI [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917668|gb|EFV39013.1| IscR-regulated protein YhgI [Enterobacteriaceae bacterium 9_2_54FAA] Length = 191 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 ++ D+ +++R++ VL +++ P +A GG + + + DGI L G C+GC TLK Sbjct: 101 VDDDAPLIERVEYVLQSQINPQLAGHGGKVTLMEITEDGIAILQFGGGCNGCSMVDYTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 EGIEKELLQKFPELKGVR 178 >gi|294625346|ref|ZP_06703982.1| thioredoxin-like protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664692|ref|ZP_06730025.1| thioredoxin-like protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600364|gb|EFF44465.1| thioredoxin-like protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605545|gb|EFF48863.1| thioredoxin-like protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 199 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%) Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASE 166 G+ +++V+R++ V++N V P +A GG + + DG+V L G C GC A Sbjct: 100 GEAPAESASMVERVRWVVENEVNPQLASHGGRVAVQEVSADGVVLLRFGGGCHGCGMADV 159 Query: 167 TLKYGVANILNHFVPEVKDIR 187 TLK G+ L VP V +R Sbjct: 160 TLKQGIEKTLMGRVPGVTAVR 180 >gi|261886108|ref|ZP_06010147.1| NifU family protein [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 88 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD +++ +KE L + P + +DGG + G ++G+V++ + G C GC ++S+TLKYG Sbjct: 5 SDEELLEPVKESL-KVIMPMLEQDGGGMELLGIKNGVVYVRLTGHCHGCAASSQTLKYGA 63 Query: 173 ANILN 177 L+ Sbjct: 64 ERQLS 68 >gi|17228804|ref|NP_485352.1| hypothetical protein asr1309 [Nostoc sp. PCC 7120] gi|75909243|ref|YP_323539.1| nitrogen-fixing NifU-like protein [Anabaena variabilis ATCC 29413] gi|17130656|dbj|BAB73266.1| asr1309 [Nostoc sp. PCC 7120] gi|75702968|gb|ABA22644.1| Nitrogen-fixing NifU-like protein [Anabaena variabilis ATCC 29413] Length = 76 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + ++ VLD +RP + DGG++ IV L ++GAC CPS++ TL+ G+ L Sbjct: 5 IDNVETVLDE-MRPYLISDGGNVELVELDGPIVKLRLQGACGSCPSSTMTLRMGIERRLR 63 Query: 178 HFVPEVKDIRTV 189 +PE+ ++ V Sbjct: 64 EMIPEIAEVEQV 75 >gi|284162204|ref|YP_003400827.1| nitrogen-fixing NifU domain protein [Archaeoglobus profundus DSM 5631] gi|284012201|gb|ADB58154.1| nitrogen-fixing NifU domain protein [Archaeoglobus profundus DSM 5631] Length = 77 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++++EV++ +RP + DGG+I ++GIV + + GAC GCP A TL V L Sbjct: 5 EKVEEVVNKEIRPYLMADGGNIAVVDVDEKEGIVKVKLMGACYGCPMAQITLTAFVEQHL 64 Query: 177 NHFVPEVKDI 186 +PEVK + Sbjct: 65 KSRIPEVKKV 74 >gi|225010130|ref|ZP_03700602.1| nitrogen-fixing NifU domain protein [Flavobacteria bacterium MS024-3C] gi|225005609|gb|EEG43559.1| nitrogen-fixing NifU domain protein [Flavobacteria bacterium MS024-3C] Length = 79 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++Q++++ LD +RP + DGGDI +G V + + GAC GC TLK GV + Sbjct: 6 LLQQVEKALD-EIRPFLQSDGGDIALEGIEGNTVKVRLMGACVGCSVNQMTLKSGVELTI 64 Query: 177 NHFVPEVKDI 186 + P+++ + Sbjct: 65 KKYAPQIEQV 74 >gi|116781227|gb|ABK22014.1| unknown [Picea sitchensis] Length = 238 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V+ I+ +LD VRP + DGG++ +V L ++GAC CPS+ T+K G+ L Sbjct: 89 TVENIEMILD-EVRPYLMADGGNVELHEIDGNVVTLKLQGACGSCPSSMTTMKTGIEGRL 147 Query: 177 NHFVPEVKDIRTV 189 +PE+ ++ V Sbjct: 148 MEKIPEIIAVKQV 160 >gi|237751304|ref|ZP_04581784.1| NifU family protein [Helicobacter bilis ATCC 43879] gi|229372670|gb|EEO23061.1| NifU family protein [Helicobacter bilis ATCC 43879] Length = 95 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 2/73 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD+ ++ +++ + N VRP + +DGGDI ++ VF+ GACSGCPS + TL + Sbjct: 20 SDTELLAPVRQSI-NSVRPILLKDGGDIEIVEIKNACVFVRFHGACSGCPSKNATLHNAI 78 Query: 173 ANILNHFV-PEVK 184 L + P++K Sbjct: 79 LATLQRDIHPDIK 91 >gi|258404239|ref|YP_003196981.1| Fe-S cluster assembly protein NifU [Desulfohalobium retbaense DSM 5692] gi|257796466|gb|ACV67403.1| Fe-S cluster assembly protein NifU [Desulfohalobium retbaense DSM 5692] Length = 283 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +Q + +V++ +RP++ +DGGDI V +++RG CSGCPS+ TLK V L Sbjct: 210 MQLVNDVIEKEIRPSLQKDGGDIELIDIEGREVQVALRGMCSGCPSSQLTLKNVVERRLQ 269 Query: 178 HFV-PEV 183 V PE+ Sbjct: 270 ERVEPEI 276 >gi|282898150|ref|ZP_06306143.1| Nitrogen-fixing NifU-like protein [Raphidiopsis brookii D9] gi|281196974|gb|EFA71877.1| Nitrogen-fixing NifU-like protein [Raphidiopsis brookii D9] Length = 76 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++ ++ VLD +RP + DGG++ IV L ++GAC CPS++ TL+ G+ L Sbjct: 5 LENVETVLDE-MRPYLMSDGGNVEVVELDGPIVKLRLQGACGSCPSSTMTLRMGIERRLK 63 Query: 178 HFVPEVKDIRTV 189 +PE+ ++ V Sbjct: 64 EMIPEIGEVEQV 75 >gi|33860975|ref|NP_892536.1| NifU-like protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33639707|emb|CAE18877.1| NifU-like protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 81 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD +RP + DGG++ IV + ++GAC CPS++ TLK G+ L Sbjct: 11 ENVETVLD-ELRPFLISDGGNVEIAEIDGPIVKVRLQGACGSCPSSTMTLKMGIERKLKE 69 Query: 179 FVPEVKDIRTV 189 +PE+ ++ V Sbjct: 70 MIPEISEVVQV 80 >gi|126656503|ref|ZP_01727764.1| Fe-S cluster assembly protein NifU [Cyanothece sp. CCY0110] gi|126622189|gb|EAZ92896.1| Fe-S cluster assembly protein NifU [Cyanothece sp. CCY0110] Length = 293 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV-ANILNHF 179 I++VL+ VRPA+A+DGGD+ +V + ++GAC CPS++ TLK + A + + Sbjct: 225 IQQVLEEEVRPALAQDGGDVDLFDVDGDLVKVILKGACDSCPSSTATLKMAIEARLRDRV 284 Query: 180 VPEV 183 P++ Sbjct: 285 SPDL 288 >gi|282900620|ref|ZP_06308562.1| Nitrogen-fixing NifU-like protein [Cylindrospermopsis raciborskii CS-505] gi|281194420|gb|EFA69375.1| Nitrogen-fixing NifU-like protein [Cylindrospermopsis raciborskii CS-505] Length = 76 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++ ++ VLD +RP + DGG++ IV L ++GAC CPS++ TL+ G+ L Sbjct: 5 LENVETVLDE-MRPYLISDGGNVEVVELDGPIVKLRLQGACGSCPSSTMTLRMGIERRLK 63 Query: 178 HFVPEVKDIRTV 189 +PE+ ++ V Sbjct: 64 EMIPEIGEVEQV 75 >gi|218245975|ref|YP_002371346.1| nitrogen-fixing NifU domain-containing protein [Cyanothece sp. PCC 8801] gi|257059024|ref|YP_003136912.1| nitrogen-fixing NifU domain protein [Cyanothece sp. PCC 8802] gi|218166453|gb|ACK65190.1| nitrogen-fixing NifU domain protein [Cyanothece sp. PCC 8801] gi|256589190|gb|ACV00077.1| nitrogen-fixing NifU domain protein [Cyanothece sp. PCC 8802] Length = 79 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 ++ VLD +RP + DGG++ +V L ++GAC CPS++ TL+ G+ L + Sbjct: 11 VETVLDE-MRPYLMADGGNVELVELDGPVVKLRLQGACGSCPSSTMTLRMGIERRLREMI 69 Query: 181 PEVKDIRTV 189 PE+ ++ V Sbjct: 70 PEIAEVEQV 78 >gi|91201114|emb|CAJ74173.1| strongly similar to iron sulfur [Fe-S] cofactor protein NifU [Candidatus Kuenenia stuttgartiensis] Length = 284 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 35/63 (55%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 ++E ++ +RPA+ DGGDI V +S RG+CS CPS+ TLK V L FV Sbjct: 214 VQETIEREIRPALLADGGDIELIDIDGDRVMVSFRGSCSACPSSGVTLKSTVEAKLREFV 273 Query: 181 PEV 183 + Sbjct: 274 TDT 276 >gi|78047985|ref|YP_364160.1| thioredoxin-like protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927803|ref|ZP_08189028.1| thioredoxin-like protein [Xanthomonas perforans 91-118] gi|123584909|sp|Q3BSV3|NFUA_XANC5 RecName: Full=Fe/S biogenesis protein nfuA gi|78036415|emb|CAJ24106.1| thioredoxin-like protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541793|gb|EGD13310.1| thioredoxin-like protein [Xanthomonas perforans 91-118] Length = 199 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%) Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASE 166 G+ +++V+R++ V++N + P +A GG + + DG+V L G C GC A Sbjct: 100 GEAPAESASMVERVRWVVENEINPQLASHGGRVAVQEVSADGVVLLRFGGGCHGCGMADV 159 Query: 167 TLKYGVANILNHFVPEVKDIR 187 TLK G+ L VP V +R Sbjct: 160 TLKQGIEKTLMGRVPGVTAVR 180 >gi|166364297|ref|YP_001656570.1| NifU-like protein [Microcystis aeruginosa NIES-843] gi|166086670|dbj|BAG01378.1| NifU-like protein [Microcystis aeruginosa NIES-843] Length = 78 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 1/66 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 +++VLD +RP + DGG++ +V L ++GAC CPS++ TLK G+ L + Sbjct: 10 VEQVLDE-MRPYLMADGGNVELVEIDGPVVKLRLQGACGSCPSSTMTLKMGIERRLREVI 68 Query: 181 PEVKDI 186 PE+ ++ Sbjct: 69 PEIAEV 74 >gi|67921653|ref|ZP_00515171.1| Nitrogen-fixing NifU, C-terminal [Crocosphaera watsonii WH 8501] gi|67856765|gb|EAM52006.1| Nitrogen-fixing NifU, C-terminal [Crocosphaera watsonii WH 8501] Length = 80 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 ++ VLD +RP + DGG++ +V L ++GAC CPS++ TL+ G+ L + Sbjct: 12 VETVLDE-MRPYLMADGGNVELVDIEGPVVKLRLQGACGSCPSSTMTLRMGIERRLREMI 70 Query: 181 PEVKDIRTV 189 PE+ ++ V Sbjct: 71 PEIGEVEQV 79 >gi|163848313|ref|YP_001636357.1| Rieske (2Fe-2S) domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|163669602|gb|ABY35968.1| Rieske (2Fe-2S) domain protein [Chloroflexus aurantiacus J-10-fl] Length = 293 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + R + VLD+ RP + GGD RDG+ +L + G+C+GC ++ TL+ V +L Sbjct: 100 ITRARRVLDS-ARPYMQSHGGDAELIDVRDGVAYLRLHGSCNGCSLSAFTLRKHVEEVLL 158 Query: 178 HFVPEVKDIRTV 189 VPE+ + V Sbjct: 159 REVPEITRLEVV 170 >gi|317495423|ref|ZP_07953792.1| NifU domain-containing protein [Gemella moribillum M424] gi|316914482|gb|EFV35959.1| NifU domain-containing protein [Gemella moribillum M424] Length = 84 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +V +IK L+ ++RP + DGG+I F Y+DGI+ + G C+ C + TLK+ + + Sbjct: 8 IVDKIKLELE-KIRPKLIADGGNIEFINYKDGILKIRFLGECAHCELSHITLKFAIEKNI 66 Query: 177 NHFVPEVKDIRTV 189 +PEV + V Sbjct: 67 KEKIPEVNKVIEV 79 >gi|86134908|ref|ZP_01053490.1| NifU-like protein [Polaribacter sp. MED152] gi|85821771|gb|EAQ42918.1| NifU-like protein [Polaribacter sp. MED152] Length = 78 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +++ LD +RP + DGG+I D IV + ++GAC+GC TLK GV + + Sbjct: 9 NVEKALD-EIRPFLMSDGGNIKLLSIEDAIVKVQLQGACTGCSVNQMTLKNGVEATIKKY 67 Query: 180 VPEVKDIRTV 189 P+++ + V Sbjct: 68 APQIEQVINV 77 >gi|253700042|ref|YP_003021231.1| nitrogen-fixing NifU domain protein [Geobacter sp. M21] gi|251774892|gb|ACT17473.1| nitrogen-fixing NifU domain protein [Geobacter sp. M21] Length = 73 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + +K +L+ ++RPA+ DGGD+ + + DGIV + + GAC CP ++ TLK G+ + Sbjct: 3 EEVKAILE-QIRPALQADGGDVELVEVTDDGIVKVRLVGACGHCPMSTMTLKMGIERTIK 61 Query: 178 HFVPEVKDIRTV 189 +P +K++ V Sbjct: 62 DKIPGIKEVVAV 73 >gi|319891909|ref|YP_004148784.1| Nitrogen-fixing NifU domain protein [Staphylococcus pseudintermedius HKU10-03] gi|317161605|gb|ADV05148.1| Nitrogen-fixing NifU domain protein [Staphylococcus pseudintermedius HKU10-03] gi|323465000|gb|ADX77153.1| nitrogen fixation protein NifU [Staphylococcus pseudintermedius ED99] Length = 80 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 1/64 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ + ++ EV++ ++RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 4 ENATMYDQVAEVIE-KLRPFLLRDGGDCELVDVEDGIVKLQLLGACGTCPSSTITLKAGI 62 Query: 173 ANIL 176 L Sbjct: 63 ERAL 66 >gi|323343211|ref|ZP_08083442.1| Fe/S-biogenesis protein NfuA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463275|gb|EFY08470.1| Fe/S-biogenesis protein NfuA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 79 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +RI E LD ++RP + RDGGD+ F +G+V + + GAC GC TLK GV +L Sbjct: 5 ERIIESLD-KIRPYIQRDGGDMEFVSVDENGVVTVKLLGACIGCGLIDYTLKGGVEALLM 63 Query: 178 HFVPEV 183 +PEV Sbjct: 64 DEIPEV 69 >gi|111021577|ref|YP_704549.1| nitrogen fixation protein [Rhodococcus jostii RHA1] gi|110821107|gb|ABG96391.1| possible nitrogen fixation protein [Rhodococcus jostii RHA1] Length = 318 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V R+ LD+ VRP + GGD+ G +G+V L + G+C CPS++ TL+ V + + Sbjct: 99 VETRVATALDS-VRPYLGSHGGDVELLGVVEGVVRLRLTGSCQSCPSSAVTLELAVKDAV 157 Query: 177 NHFVPEVKDIRTV 189 PE DI V Sbjct: 158 LAAAPETVDIEVV 170 >gi|222526228|ref|YP_002570699.1| Rieske (2Fe-2S) domain-containing protein [Chloroflexus sp. Y-400-fl] gi|222450107|gb|ACM54373.1| Rieske (2Fe-2S) domain protein [Chloroflexus sp. Y-400-fl] Length = 285 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + R + VLD+ RP + GGD RDG+ +L + G+C+GC ++ TL+ V +L Sbjct: 92 ITRARRVLDS-ARPYMQSHGGDAELIDVRDGVAYLRLHGSCNGCSLSAFTLRKHVEEVLL 150 Query: 178 HFVPEVKDIRTV 189 VPE+ + V Sbjct: 151 REVPEITRLEVV 162 >gi|158520102|ref|YP_001527972.1| NifU domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158508928|gb|ABW65895.1| nitrogen-fixing NifU domain protein [Desulfococcus oleovorans Hxd3] Length = 72 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +++K LD ++RP + DGGD+ +G V + ++GAC+GCP + TLK + L Sbjct: 3 EQVKAALD-KIRPQLQADGGDVELVDVENGNVSVRLKGACAGCPMSQITLKQRIEAYLKK 61 Query: 179 FVPEVKDIRTV 189 VP V ++ V Sbjct: 62 TVPGVINVEKV 72 >gi|116072270|ref|ZP_01469537.1| NifU-like protein [Synechococcus sp. BL107] gi|116064792|gb|EAU70551.1| NifU-like protein [Synechococcus sp. BL107] Length = 81 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + ++ ++ VLD +RP + DGG++ IV + ++GAC CPS++ TLK G Sbjct: 4 ETKALTLENVETVLDE-LRPFLMADGGNVEVVEIDGPIVKVRLQGACGSCPSSTMTLKMG 62 Query: 172 VANILNHFVPEVKDI 186 + + +PEV ++ Sbjct: 63 IERKMRESIPEVSEV 77 >gi|82548259|gb|ABB82950.1| uncharacterized protein with NifU-like and HesB-like domains [uncultured organism HF70_19B12] Length = 187 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 8/167 (4%) Query: 25 EGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEH 84 E +H+S+ E E LA RI I G F YD + + + V G + Sbjct: 10 EMLLHYSSQAE-EGDSLALRI-EIVGRGPKGFQYDLQFIDISDASADDVAQEVRGFQVRI 67 Query: 85 FISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV-----VQRIKEVLDNRVRPAVARDGGD 139 + + L D K MG G E+ + + QR+ EV+D V PAVA GG Sbjct: 68 AMRSAKYLEGATL-DFKETLMGGGFSFENPNPLWIDDLSQRVAEVIDKNVNPAVASHGGH 126 Query: 140 IVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 + G ++ G C GC A TLK GV ++ VPE+ ++ Sbjct: 127 VDLVGVDANKAIIAFGGGCQGCGMADVTLKQGVEVMIMDNVPEIIEV 173 >gi|33866219|ref|NP_897778.1| NifU-like protein [Synechococcus sp. WH 8102] gi|78212340|ref|YP_381119.1| NifU-like protein [Synechococcus sp. CC9605] gi|33639194|emb|CAE08202.1| NifU-like protein [Synechococcus sp. WH 8102] gi|78196799|gb|ABB34564.1| NifU-like protein [Synechococcus sp. CC9605] Length = 81 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + ++ +++VLD +RP + DGG++ IV + ++GAC CPS++ TLK G Sbjct: 4 ETMALTLENVEKVLDE-LRPFLMADGGNVEVVELDGPIVKVRLQGACGSCPSSTMTLKMG 62 Query: 172 VANILNHFVPEVKDIRTV 189 + + +PEV ++ V Sbjct: 63 IERKMRESIPEVSEVVQV 80 >gi|269928406|ref|YP_003320727.1| nitrogen-fixing NifU domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269787763|gb|ACZ39905.1| nitrogen-fixing NifU domain protein [Sphaerobacter thermophilus DSM 20745] Length = 290 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V +R+ + LD RVRP + GGD+ DG+ + +RG C GCP+++ TL+ + + Sbjct: 88 VEERVGQALD-RVRPYLHSHGGDVDLLEIVDGVARVRLRGTCRGCPASAVTLRLAIERAV 146 Query: 177 NHFVPEVKDIRTV 189 + P++ I V Sbjct: 147 HELAPDLDGIEAV 159 >gi|254524604|ref|ZP_05136659.1| protein GntY [Stenotrophomonas sp. SKA14] gi|219722195|gb|EED40720.1| protein GntY [Stenotrophomonas sp. SKA14] Length = 199 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVA 173 +++V+R+ V++N + P +A GG + + DG+V L G C GC A TLK G+ Sbjct: 107 ASLVERVHWVVENEINPQLASHGGKVAVQEVSADGVVLLRFGGGCQGCGMADVTLKQGIE 166 Query: 174 NILNHFVPEVKDIR 187 L VP V +R Sbjct: 167 KTLMGRVPGVTAVR 180 >gi|88801953|ref|ZP_01117481.1| NifU-like protein [Polaribacter irgensii 23-P] gi|88782611|gb|EAR13788.1| NifU-like protein [Polaribacter irgensii 23-P] Length = 78 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 122 KEVLDN------RVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 +E L+N +RP + DGG+I DG+V + + GAC+GC TLK GV Sbjct: 4 EETLENVEKALEEIRPFLMSDGGNIKLLSIEDGVVKVQLEGACTGCSVNQMTLKNGVEAT 63 Query: 176 LNHFVPEVKDIRTV 189 + + P++ ++ V Sbjct: 64 IKKYAPQIVEVINV 77 >gi|159902957|ref|YP_001550301.1| NifU-like protein [Prochlorococcus marinus str. MIT 9211] gi|159888133|gb|ABX08347.1| NifU-like protein [Prochlorococcus marinus str. MIT 9211] Length = 81 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 1/66 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 +++VLD +RP + DGG++ IV + ++GAC CPS++ TLK G+ L + Sbjct: 13 VEKVLDE-LRPFLMADGGNVEIVEIDGPIVKVRLQGACGSCPSSTMTLKMGIERKLREMI 71 Query: 181 PEVKDI 186 PEV ++ Sbjct: 72 PEVSEV 77 >gi|268325898|emb|CBH39486.1| conserved hypothetical protein, containing NifU-like domain [uncultured archaeon] Length = 116 Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 37/67 (55%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 ++KEV++ ++P A DGG I D L + GAC+GCP + TL V L Sbjct: 4 KVKEVIEKELKPLFAVDGGGIELVSVDDSEAKLKLSGACAGCPMSQYTLANIVEVTLKEK 63 Query: 180 VPEVKDI 186 VPE+K++ Sbjct: 64 VPELKEV 70 >gi|325972864|ref|YP_004249055.1| nitrogen-fixing NifU domain-containing protein [Spirochaeta sp. Buddy] gi|324028102|gb|ADY14861.1| nitrogen-fixing NifU domain-containing protein [Spirochaeta sp. Buddy] Length = 75 Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 ++K +++ +RP++ DGGDI F V + ++GAC+GCP + TLK GV L +F Sbjct: 4 KVKRAIED-IRPSLQNDGGDIEFVSLVGSDVTVRLKGACAGCPMSQMTLKSGVERYLRNF 62 Query: 180 V 180 V Sbjct: 63 V 63 >gi|16332125|ref|NP_442853.1| NifU protein [Synechocystis sp. PCC 6803] gi|1653754|dbj|BAA18665.1| NifU protein [Synechocystis sp. PCC 6803] Length = 76 Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + ++ VLD +RP + DGG++ IV + ++GAC CPS++ TLK G+ L Sbjct: 5 LNNVETVLDE-LRPYLMADGGNVEVVELDGPIVKVRLQGACGSCPSSTMTLKMGIERKLR 63 Query: 178 HFVPEVKDIRTV 189 +PE+ ++ V Sbjct: 64 EMIPEIAEVEQV 75 >gi|78189610|ref|YP_379948.1| NifU protein, putative [Chlorobium chlorochromatii CaD3] gi|78171809|gb|ABB28905.1| NifU protein, putative [Chlorobium chlorochromatii CaD3] Length = 84 Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 2/84 (2%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSAS 165 S D++ S ++ R+ L+ VRP + DGGD G +D +V + + GAC CP ++ Sbjct: 2 SKDYLPSSDSLYDRVIAALET-VRPYLQADGGDCQLVGISKDMVVDVKLLGACGSCPMST 60 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TL+ GV + +PE+ + +V Sbjct: 61 LTLRAGVEQAIKKAIPEIVRVESV 84 >gi|95929342|ref|ZP_01312085.1| nitrogen-fixing NifU-like [Desulfuromonas acetoxidans DSM 684] gi|95134458|gb|EAT16114.1| nitrogen-fixing NifU-like [Desulfuromonas acetoxidans DSM 684] Length = 74 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILN 177 ++I+ LD VRP + DGG++ D G+V + + GAC CP ++ TLK G+ IL Sbjct: 3 EQIEAALDE-VRPTLLADGGNVELVDVSDDGVVSVKLVGACGSCPMSTVTLKMGIERILL 61 Query: 178 HFVPEVKDIRTV 189 VP VK++ V Sbjct: 62 EKVPGVKEVVQV 73 >gi|283851976|ref|ZP_06369252.1| Fe-S cluster assembly protein NifU [Desulfovibrio sp. FW1012B] gi|283572700|gb|EFC20684.1| Fe-S cluster assembly protein NifU [Desulfovibrio sp. FW1012B] Length = 283 Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 + +V++ +RP + +DGGDI V +S+RGAC GCP ++ TL V N L V Sbjct: 213 VTKVMEEEIRPNLKKDGGDIELVDIDGHTVVVSLRGACKGCPKSNLTLTEFVQNRLRELV 272 Query: 181 -PEV 183 PE+ Sbjct: 273 EPEI 276 >gi|192359576|ref|YP_001983001.1| yhgI protein [Cellvibrio japonicus Ueda107] gi|190685741|gb|ACE83419.1| yhgI protein [Cellvibrio japonicus Ueda107] Length = 197 Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + DS + RI VL N V P++A GG++ + + D I L G C GC S + TLK Sbjct: 107 VTDDSPLEDRINYVLYNDVNPSLAAHGGNVSLVEVTEDMIAILKFGGGCQGCGSVALTLK 166 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ L +PE+K IR V Sbjct: 167 QGIEVQLMDKLPELKGIRDV 186 >gi|56751077|ref|YP_171778.1| putative NifU-like protein [Synechococcus elongatus PCC 6301] gi|81299261|ref|YP_399469.1| putative NifU-like protein [Synechococcus elongatus PCC 7942] gi|24414813|emb|CAD55626.1| putative NifU-like protein [Synechococcus elongatus PCC 7942] gi|56686036|dbj|BAD79258.1| putative NifU-like protein [Synechococcus elongatus PCC 6301] gi|81168142|gb|ABB56482.1| putative NifU-like protein [Synechococcus elongatus PCC 7942] Length = 81 Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD +RP + DGG++ IV L + GAC CPS++ TL+ G+ L Sbjct: 11 ENVETVLDE-LRPYLIADGGNVELVELDGPIVKLRLNGACGSCPSSTMTLRMGIERKLRE 69 Query: 179 FVPEVKDIRTV 189 +PE+ ++ V Sbjct: 70 SIPEISEVEQV 80 >gi|315225280|ref|ZP_07867097.1| nitrogen fixation protein NifU [Capnocytophaga ochracea F0287] gi|314944963|gb|EFS96995.1| nitrogen fixation protein NifU [Capnocytophaga ochracea F0287] Length = 79 Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLKYGVANILN 177 Q++ + LD ++RP + DGGDI DG IV + + G C+ C TLK GV + Sbjct: 8 QKVIKALD-KIRPYLQNDGGDISLVDIEDGKIVKVRLEGTCTNCSVNQLTLKSGVEMTIK 66 Query: 178 HFVPEVKDIRTV 189 FVP+++ + +V Sbjct: 67 EFVPQIEKVISV 78 >gi|87125583|ref|ZP_01081428.1| NifU-like protein [Synechococcus sp. RS9917] gi|86166883|gb|EAQ68145.1| NifU-like protein [Synechococcus sp. RS9917] Length = 81 Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++VLD +RP + DGG++ +V + ++GAC CPS++ TLK G+ L Sbjct: 11 ENVEKVLDE-LRPFLMADGGNVEVVEIDGPVVKVRLQGACGSCPSSTMTLKMGIERKLRE 69 Query: 179 FVPEVKDIRTV 189 +PEV ++ V Sbjct: 70 MIPEVSEVVQV 80 >gi|257790861|ref|YP_003181467.1| nitrogen-fixing NifU domain-containing protein [Eggerthella lenta DSM 2243] gi|317488428|ref|ZP_07946981.1| NifU-like domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325831888|ref|ZP_08164985.1| NifU-like protein [Eggerthella sp. HGA1] gi|257474758|gb|ACV55078.1| nitrogen-fixing NifU domain protein [Eggerthella lenta DSM 2243] gi|316912472|gb|EFV34028.1| NifU-like domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325486209|gb|EGC88661.1| NifU-like protein [Eggerthella sp. HGA1] Length = 77 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 129 VRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +RP++ DGGD+ + DG+V + ++GAC GCP + TL GV IL VP V + Sbjct: 14 IRPSLQADGGDVRLVDVNEDGVVSVELQGACKGCPMSQMTLANGVERILKERVPGVTKV 72 >gi|255069975|ref|XP_002507069.1| iron-sulfur cluster scaffold protein, plastid precursor [Micromonas sp. RCC299] gi|226522344|gb|ACO68327.1| iron-sulfur cluster scaffold protein, plastid precursor [Micromonas sp. RCC299] Length = 393 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 31/50 (62%) Query: 127 NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 N VRP +A DGGD+ G DGIV + M GAC C S++ TLK G+ L Sbjct: 250 NEVRPFLAADGGDVEVVGIEDGIVAVRMFGACGTCSSSTATLKGGIEATL 299 >gi|297792273|ref|XP_002864021.1| hypothetical protein ARALYDRAFT_331396 [Arabidopsis lyrata subsp. lyrata] gi|297309856|gb|EFH40280.1| hypothetical protein ARALYDRAFT_331396 [Arabidopsis lyrata subsp. lyrata] Length = 707 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD +RP + DGG++ IV + ++GAC CPS++ T+K G+ L Sbjct: 87 ENVESVLDE-IRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRLME 145 Query: 179 FVPEVKDIRTV 189 +PE+ + V Sbjct: 146 KIPEIVAVEAV 156 >gi|189345962|ref|YP_001942491.1| nitrogen-fixing NifU domain protein [Chlorobium limicola DSM 245] gi|189340109|gb|ACD89512.1| nitrogen-fixing NifU domain protein [Chlorobium limicola DSM 245] Length = 86 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 2/84 (2%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSAS 165 S D++ + A+ R+ L+ VRP + DGGD G +D +V + + GAC CP ++ Sbjct: 4 SKDYLPNSDALYDRVIAALET-VRPYLQVDGGDCQLVGITKDMVVDVKLLGACGSCPMST 62 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TL+ GV + +PE+ + +V Sbjct: 63 ITLRAGVEQAIKKAIPEIARVESV 86 >gi|119493943|ref|ZP_01624504.1| putative NifU-like protein [Lyngbya sp. PCC 8106] gi|119452300|gb|EAW33495.1| putative NifU-like protein [Lyngbya sp. PCC 8106] Length = 79 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD +RP + DGG++ IV L ++GAC CPS++ TLK G+ L Sbjct: 9 ENVETVLDE-LRPYLMADGGNVEIVELDGPIVRLRLQGACGSCPSSTMTLKMGIERRLRE 67 Query: 179 FVPEVKDIRTV 189 +PE+ ++ V Sbjct: 68 KIPEIAEVVAV 78 >gi|330720100|gb|EGG98512.1| hypothetical protein imdm_2277 [gamma proteobacterium IMCC2047] Length = 195 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIV-FLSMRGACSGCPSASETLK 169 + +S + +R+ VL V P +A GG++ D V L G C GC S TLK Sbjct: 105 VNENSTLEERVNYVLWTEVNPMLASHGGEVSLMEIADETVAVLKFGGGCQGCSSVDVTLK 164 Query: 170 YGVANILNHFVPEVKDIR 187 GV L +PE+ +IR Sbjct: 165 EGVEKTLREHIPELTEIR 182 >gi|149195166|ref|ZP_01872257.1| Nitrogen-fixing NifU-like protein [Caminibacter mediatlanticus TB-2] gi|149134718|gb|EDM23203.1| Nitrogen-fixing NifU-like protein [Caminibacter mediatlanticus TB-2] Length = 98 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%) Query: 127 NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +RP + DGGD+ + IVF+ ++G C GC SA TLKYG+ L Sbjct: 20 EEIRPMLQMDGGDVKLIDVKKPIVFVQLQGGCVGCASAGATLKYGIEKALKE 71 >gi|257457207|ref|ZP_05622382.1| nitrogen-fixing NifU domain protein [Treponema vincentii ATCC 35580] gi|257445358|gb|EEV20426.1| nitrogen-fixing NifU domain protein [Treponema vincentii ATCC 35580] Length = 94 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 37/66 (56%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++ LD VRP + GGD+ + DG+V + G C+GCP+A T + + L Sbjct: 3 EELEKTLDTYVRPLLRTHGGDMQVVDFTDGVVKFKLHGHCAGCPAADFTTENLIQTELMA 62 Query: 179 FVPEVK 184 +PEVK Sbjct: 63 HLPEVK 68 >gi|121534267|ref|ZP_01666091.1| nitrogen-fixing NifU domain protein [Thermosinus carboxydivorans Nor1] gi|121307037|gb|EAX47955.1| nitrogen-fixing NifU domain protein [Thermosinus carboxydivorans Nor1] Length = 98 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILNHF 179 I++VLD +VRP++ GGDI + D G + + + GACS CP A +TL V L Sbjct: 8 IQQVLDEKVRPSLLSHGGDISLQEITDDGYIKVRLTGACSTCPGAQQTLAEVVEAALRDA 67 Query: 180 VPEVK 184 P+++ Sbjct: 68 CPDLQ 72 >gi|332292115|ref|YP_004430724.1| nitrogen-fixing NifU domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332170201|gb|AEE19456.1| nitrogen-fixing NifU domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 80 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 2/76 (2%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVA 173 + + Q++++ L+ +RP + DGGDI G D IV + ++GAC GC TLK GV Sbjct: 4 AELTQKVEDALE-EIRPFLQSDGGDITLLGIENDTIVRVQLQGACVGCSVNQMTLKSGVE 62 Query: 174 NILNHFVPEVKDIRTV 189 + P+++++ V Sbjct: 63 MTIKKHAPQIEEVINV 78 >gi|296171555|ref|ZP_06852819.1| Rieske family iron-sulfur cluster-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894117|gb|EFG73878.1| Rieske family iron-sulfur cluster-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 305 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +R+ + LD RVRP + GGD+ + + DG+V L+ G+C CPS++ TL+ V + + Sbjct: 104 RRVSDALD-RVRPYLGSHGGDVDLLEITDDGVVRLAFAGSCKSCPSSAVTLELAVQDAVC 162 Query: 178 HFVPEVKDIRTV 189 PEV I V Sbjct: 163 AAAPEVSSIEAV 174 >gi|58582689|ref|YP_201705.1| hypothetical protein XOO3066 [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427283|gb|AAW76320.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 211 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%) Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASE 166 G+ +++V+R++ V++N + P +A GG + + DG+V L G C GC A Sbjct: 112 GEAPAESASMVERVRWVVENEINPQLASHGGRVAVQEVSADGVVLLRFGGGCHGCGMADV 171 Query: 167 TLKYGVANILNHFVPEVKDIR 187 TLK G+ L VP V +R Sbjct: 172 TLKQGIEKTLMGRVPGVIAVR 192 >gi|84624576|ref|YP_451948.1| hypothetical protein XOO_2919 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166712246|ref|ZP_02243453.1| hypothetical protein Xoryp_12525 [Xanthomonas oryzae pv. oryzicola BLS256] gi|123521499|sp|Q2P1A3|NFUA_XANOM RecName: Full=Fe/S biogenesis protein nfuA gi|84368516|dbj|BAE69674.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 199 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%) Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASE 166 G+ +++V+R++ V++N + P +A GG + + DG+V L G C GC A Sbjct: 100 GEAPAESASMVERVRWVVENEINPQLASHGGRVAVQEVSADGVVLLRFGGGCHGCGMADV 159 Query: 167 TLKYGVANILNHFVPEVKDIR 187 TLK G+ L VP V +R Sbjct: 160 TLKQGIEKTLMGRVPGVIAVR 180 >gi|289665916|ref|ZP_06487497.1| hypothetical protein XcampvN_23290 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 199 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%) Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASE 166 G+ +++V+R++ V++N + P +A GG + + DG+V L G C GC A Sbjct: 100 GEAPAESASMVERVRWVVENEINPQLASHGGRVAVQEVSADGVVLLRFGGGCHGCGMADV 159 Query: 167 TLKYGVANILNHFVPEVKDIR 187 TLK G+ L VP V +R Sbjct: 160 TLKQGIEKTLMGRVPGVIAVR 180 >gi|37522446|ref|NP_925823.1| hypothetical protein gsl2877 [Gloeobacter violaceus PCC 7421] gi|35213447|dbj|BAC90818.1| gsl2877 [Gloeobacter violaceus PCC 7421] Length = 85 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 38/67 (56%) Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 E++ + +RP + DGG++ IV L ++GAC CPS++ TLK G+ + +P Sbjct: 18 ELVLDELRPYLMSDGGNVELVEIEGPIVKLRLQGACGSCPSSTYTLKLGIERRMRELIPA 77 Query: 183 VKDIRTV 189 V ++ V Sbjct: 78 VAEVEQV 84 >gi|78186286|ref|YP_374329.1| NifU protein, putative [Chlorobium luteolum DSM 273] gi|78166188|gb|ABB23286.1| NifU protein, putative [Chlorobium luteolum DSM 273] Length = 89 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 2/84 (2%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSAS 165 S D++ + A+ R+ L+ VRP + DGGD G +D +V + + GAC CP ++ Sbjct: 7 SKDYLPNSDALYDRVIAALET-VRPYLQVDGGDCQLVGITKDMVVDVKLLGACGSCPMST 65 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TL+ GV + +PE+ + +V Sbjct: 66 LTLRAGVEQAIKKAIPEIVRVESV 89 >gi|51246082|ref|YP_065966.1| nitrogen fixation protein (NifU) [Desulfotalea psychrophila LSv54] gi|50877119|emb|CAG36959.1| probable nitrogen fixation protein (NifU) [Desulfotalea psychrophila LSv54] Length = 277 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 36/65 (55%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +++I+EVLD +RP + +D GDI V +S+RGAC C ++ T+K V L Sbjct: 206 IKKIEEVLDKVIRPVLKKDDGDIELVDVDGDFVTVSLRGACKSCSNSQTTIKEYVEKKLR 265 Query: 178 HFVPE 182 V E Sbjct: 266 ELVLE 270 >gi|255526287|ref|ZP_05393203.1| nitrogen-fixing NifU domain protein [Clostridium carboxidivorans P7] gi|296185211|ref|ZP_06853621.1| NifU-like domain protein [Clostridium carboxidivorans P7] gi|255510000|gb|EET86324.1| nitrogen-fixing NifU domain protein [Clostridium carboxidivorans P7] gi|296050045|gb|EFG89469.1| NifU-like domain protein [Clostridium carboxidivorans P7] Length = 96 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 42/71 (59%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I++V++ +V+P + GDI F +GIV + + G CSGC SA T++ V + Sbjct: 4 EKIQKVIEEKVKPYLREHNGDIKFLEIENGIVKVKLLGQCSGCVSAKYTVENIVEAAMKE 63 Query: 179 FVPEVKDIRTV 189 +PEV+ + + Sbjct: 64 EIPEVERVELI 74 >gi|255994758|ref|ZP_05427893.1| NifU family protein [Eubacterium saphenum ATCC 49989] gi|255993471|gb|EEU03560.1| NifU family protein [Eubacterium saphenum ATCC 49989] Length = 74 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILN 177 + IK L+ +VRPA+ DGGD+ F + D +V + ++G C GCP + T+K + L Sbjct: 3 EEIKAALE-KVRPALQMDGGDVEFVDFTDDKVVKVKLQGHCCGCPMSQMTVKGFIEKALR 61 Query: 178 HFVPEVKDIRTV 189 P++K + TV Sbjct: 62 ESFPDIKGVETV 73 >gi|194476553|ref|YP_002048732.1| NifU-like protein [Paulinella chromatophora] gi|171191560|gb|ACB42522.1| NifU-like protein [Paulinella chromatophora] Length = 81 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + ++ ++ VL N +RP + DGG++ +V + ++GAC CPS++ TLK G Sbjct: 4 ENLALTLENVETVL-NELRPFLIADGGNVEVAEIDGPVVKVRLQGACGSCPSSTMTLKMG 62 Query: 172 VANILNHFVPEVKDI 186 + L +PEV ++ Sbjct: 63 IERKLREAIPEVSEV 77 >gi|159028416|emb|CAO89859.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 78 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 1/66 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 +++VLD +RP + DGG++ +V + ++GAC CPS++ TLK G+ L + Sbjct: 10 VEKVLDE-MRPYLMSDGGNVELVEIDGPVVKVRLQGACGSCPSSTMTLKMGIERRLREMI 68 Query: 181 PEVKDI 186 PE+ ++ Sbjct: 69 PEIAEV 74 >gi|298527898|ref|ZP_07015302.1| Fe-S cluster assembly protein NifU [Desulfonatronospira thiodismutans ASO3-1] gi|298511550|gb|EFI35452.1| Fe-S cluster assembly protein NifU [Desulfonatronospira thiodismutans ASO3-1] Length = 281 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +Q + V+D +RP++ +DGGDI V +S RGAC+GCPS+ T K V L Sbjct: 208 MQLVTRVVDEEIRPSLHKDGGDIELVDIEGPKVMVSFRGACAGCPSSHLTAKEVVEKKLK 267 Query: 178 HFVP---EVKDIR 187 V +V+++R Sbjct: 268 ERVDSQIQVEEVR 280 >gi|219847420|ref|YP_002461853.1| nitrogen-fixing NifU domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219541679|gb|ACL23417.1| nitrogen-fixing NifU domain protein [Chloroflexus aggregans DSM 9485] Length = 286 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V R + VLDN RP + GGD RDG+ ++ + G+C+GC ++ TL+ V L Sbjct: 93 VTRARRVLDN-ARPYMQSHGGDAELVDVRDGVAYVRLHGSCNGCSLSAFTLRKHVEEALL 151 Query: 178 HFVPEVKDIRTV 189 VPE+ + V Sbjct: 152 REVPEMTRLEVV 163 >gi|33862527|ref|NP_894087.1| NifU-like protein [Prochlorococcus marinus str. MIT 9313] gi|124023791|ref|YP_001018098.1| NifU-like protein [Prochlorococcus marinus str. MIT 9303] gi|33640640|emb|CAE20429.1| NifU-like protein [Prochlorococcus marinus str. MIT 9313] gi|123964077|gb|ABM78833.1| NifU-like protein [Prochlorococcus marinus str. MIT 9303] Length = 81 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD +RP + DGG++ +V + ++GAC CPS++ TLK G+ L Sbjct: 11 ENVETVLDE-LRPFLMADGGNVEIVEIDGPVVKVRLQGACGSCPSSTMTLKMGIERKLRE 69 Query: 179 FVPEVKDIRTV 189 +PEV ++ V Sbjct: 70 MIPEVSEVVQV 80 >gi|188577468|ref|YP_001914397.1| protein GntY [Xanthomonas oryzae pv. oryzae PXO99A] gi|254767336|sp|B2STN5|NFUA_XANOP RecName: Full=Fe/S biogenesis protein nfuA gi|188521920|gb|ACD59865.1| protein GntY [Xanthomonas oryzae pv. oryzae PXO99A] Length = 199 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%) Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASE 166 G+ +++V+R++ V++N + P +A GG + + DG+V L G C GC A Sbjct: 100 GEAPAESASMVERVRWVVENEINPQLASHGGRVAVQEVSADGVVLLRFGGGCHGCGMADV 159 Query: 167 TLKYGVANILNHFVPEVKDIR 187 TLK G+ L VP V +R Sbjct: 160 TLKQGIEKTLMGRVPGVIAVR 180 >gi|46579079|ref|YP_009887.1| nitrogen fixation protein nifU [Desulfovibrio vulgaris str. Hildenborough] gi|120603338|ref|YP_967738.1| Fe-S cluster assembly protein NifU [Desulfovibrio vulgaris DP4] gi|46448492|gb|AAS95146.1| nitrogen fixation protein nifU [Desulfovibrio vulgaris str. Hildenborough] gi|120563567|gb|ABM29311.1| Fe-S cluster assembly protein NifU [Desulfovibrio vulgaris DP4] gi|311232925|gb|ADP85779.1| Fe-S cluster assembly protein NifU [Desulfovibrio vulgaris RCH1] Length = 281 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +Q + +VLD +RP + +DGGDI V +++RG C+ CPS+ TLK V L Sbjct: 208 MQLVMKVLDGEIRPRLQQDGGDIELVDMNGTEVMVALRGMCTSCPSSQLTLKEFVERTLR 267 Query: 178 HFVPEVKDIRTV 189 V + +R V Sbjct: 268 DHVDQEIVVREV 279 >gi|150015239|ref|YP_001307493.1| NifU domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149901704|gb|ABR32537.1| nitrogen-fixing NifU domain protein [Clostridium beijerinckii NCIMB 8052] Length = 73 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 127 NRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKD 185 +++RP + RDGGD+ + DG+V + M+GAC CP A T+K + L VP V + Sbjct: 10 DKIRPMLQRDGGDVELVDVSNDGVVSVKMQGACGNCPGAMMTIKMIIEQKLKEEVPGVTE 69 Query: 186 I 186 + Sbjct: 70 V 70 >gi|145219268|ref|YP_001129977.1| NifU domain-containing protein [Prosthecochloris vibrioformis DSM 265] gi|145205432|gb|ABP36475.1| nitrogen-fixing NifU domain protein [Chlorobium phaeovibrioides DSM 265] Length = 86 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 2/84 (2%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSAS 165 S D++ + A+ R+ L+ VRP + DGGD G +D +V + + GAC CP ++ Sbjct: 4 SKDYLPNSDALYDRVIAALET-VRPYLQVDGGDCQLVGISKDMVVDVKLLGACGSCPMST 62 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TL+ GV + +PE+ + +V Sbjct: 63 LTLRAGVEQAIKKAIPEIVRVESV 86 >gi|110637337|ref|YP_677544.1| hypothetical protein CHU_0925 [Cytophaga hutchinsonii ATCC 33406] gi|110280018|gb|ABG58204.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406] Length = 86 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 2/74 (2%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ ++ R+++ L++ +RP + DGG++ + + D IV L + GAC CP ++ TLK GV Sbjct: 7 NTELLDRVEQALES-IRPYLITDGGNVRLVEITEDMIVKLELLGACGTCPMSAMTLKAGV 65 Query: 173 ANILNHFVPEVKDI 186 + VPE+K + Sbjct: 66 EESIRKAVPEIKGV 79 >gi|42525980|ref|NP_971078.1| NifU domain-containing protein [Treponema denticola ATCC 35405] gi|41816030|gb|AAS10959.1| NifU domain protein [Treponema denticola ATCC 35405] Length = 75 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 129 VRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 VRP + DGGDI + G V++ ++GAC CP A TLK GV L PEV ++ Sbjct: 14 VRPYLQADGGDIELDSVDEAGKVYVKLKGACGSCPMAIYTLKMGVEEQLKDMFPEVTEVV 73 Query: 188 TV 189 V Sbjct: 74 AV 75 >gi|310643918|ref|YP_003948676.1| nifu-like protein [Paenibacillus polymyxa SC2] gi|309248868|gb|ADO58435.1| NifU-like protein [Paenibacillus polymyxa SC2] Length = 79 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 ++ + + + EVL ++RP + RDGGD +GI L GAC+GCPSA+ TLK Sbjct: 1 MDENGVLFDEVSEVL-LKLRPFLLRDGGDAELVEVENGIAKLRFLGACNGCPSATITLKV 59 Query: 171 GVANILNHFVPEVKDIRTV 189 + + + ++K++ V Sbjct: 60 AIERAILEEIDDIKEVVQV 78 >gi|120554445|ref|YP_958796.1| HesB/YadR/YfhF-family protein [Marinobacter aquaeolei VT8] gi|120324294|gb|ABM18609.1| HesB/YadR/YfhF-family protein [Marinobacter aquaeolei VT8] Length = 195 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 1/80 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ + +R+ VL + + P +A GGD+ D + L G C GC + S TLK Sbjct: 104 VADDAPLPERVNYVLASEINPNLAAHGGDVSLVEIVDESVAVLRFGGGCQGCSAVSLTLK 163 Query: 170 YGVANILNHFVPEVKDIRTV 189 GV L VPE+ +R V Sbjct: 164 QGVEKTLKERVPEISAVRDV 183 >gi|225849734|ref|YP_002729968.1| hypothetical protein PERMA_0171 [Persephonella marina EX-H1] gi|225645990|gb|ACO04176.1| conserved domain protein [Persephonella marina EX-H1] Length = 91 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 5/84 (5%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSAS 165 G+ + D A +++EVL+ ++RP + DGGD+ DG V++ + G+C GC + Sbjct: 5 QGNKVNIDRA---KVEEVLE-QIRPMLRFDGGDVELVDIGEDGTVYVRLMGSCHGCAMSL 60 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TLK G+ L +PEVK++ V Sbjct: 61 VTLKGGIEMKLKEAIPEVKEVVAV 84 >gi|86608468|ref|YP_477230.1| NifU domain-containing protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557010|gb|ABD01967.1| NifU domain protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 80 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++VL N +RP + DGG++ +V L ++GAC CPS++ TLK G+ L Sbjct: 10 ENVEKVL-NELRPYLMADGGNVELVEIDGPVVKLRLQGACGACPSSTMTLKMGIERKLRE 68 Query: 179 FVPEVKDIRTV 189 +P++ ++ V Sbjct: 69 SIPDILEVEQV 79 >gi|325921235|ref|ZP_08183096.1| thioredoxin-like protein [Xanthomonas gardneri ATCC 19865] gi|325548298|gb|EGD19291.1| thioredoxin-like protein [Xanthomonas gardneri ATCC 19865] Length = 199 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Query: 113 SDSA-VVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKY 170 +DSA +V+R++ V++N + P +A GG + + DG+V L G C GC A TLK Sbjct: 104 ADSASMVERVRWVVENEINPQLASHGGRVAVQEVSADGVVLLRFGGGCHGCGMADVTLKQ 163 Query: 171 GVANILNHFVPEVKDIR 187 G+ L VP V +R Sbjct: 164 GIEKTLMGRVPGVIAVR 180 >gi|325918641|ref|ZP_08180745.1| thioredoxin-like protein [Xanthomonas vesicatoria ATCC 35937] gi|325535148|gb|EGD07040.1| thioredoxin-like protein [Xanthomonas vesicatoria ATCC 35937] Length = 199 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Query: 113 SDSA-VVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKY 170 +DSA +V+R++ V++N + P +A GG + + DG+V L G C GC A TLK Sbjct: 104 ADSASMVERVRWVVENEINPQLASHGGRVAVQEVSADGVVLLRFGGGCHGCGMADVTLKQ 163 Query: 171 GVANILNHFVPEVKDIR 187 G+ L VP V +R Sbjct: 164 GIEKTLMGRVPGVIAVR 180 >gi|312132200|ref|YP_003999540.1| nitrogeN-fixing nifu domain protein [Leadbetterella byssophila DSM 17132] gi|311908746|gb|ADQ19187.1| nitrogen-fixing NifU domain protein [Leadbetterella byssophila DSM 17132] Length = 83 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%) Query: 120 RIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++++ LDN +RP + DGG++ V + D +V L G+C CP +S T K G+ + Sbjct: 7 KVEQALDN-IRPYLIADGGNVKVLEITEDKVVKLEFTGSCGSCPMSSMTFKAGLEEAILK 65 Query: 179 FVPEVKDIRTV 189 VPE+K + V Sbjct: 66 NVPEIKSVEAV 76 >gi|87303149|ref|ZP_01085947.1| NifU-like protein [Synechococcus sp. WH 5701] gi|87282316|gb|EAQ74276.1| NifU-like protein [Synechococcus sp. WH 5701] Length = 97 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V+ ++ VLD +RP + DGG++ V + ++GAC CPS++ TLK G+ L Sbjct: 26 VENVERVLDE-LRPYLMADGGNVEIVEIDGPTVKVRLQGACGSCPSSTMTLKMGIERKLR 84 Query: 178 HFVPEVKDI 186 +PEV ++ Sbjct: 85 EAIPEVNEV 93 >gi|86605616|ref|YP_474379.1| NifU domain-containing protein [Synechococcus sp. JA-3-3Ab] gi|86554158|gb|ABC99116.1| NifU domain protein [Synechococcus sp. JA-3-3Ab] Length = 80 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++VL N +RP + DGG++ +V L ++GAC CPS++ TLK G+ L Sbjct: 10 ENVEKVL-NELRPYLQADGGNVELVEIDGPVVKLRLQGACGACPSSTLTLKMGIERKLRE 68 Query: 179 FVPEVKDIRTV 189 +P++ ++ V Sbjct: 69 SIPDILEVEQV 79 >gi|308234420|ref|ZP_07665157.1| nitrogen-fixing NifU domain protein [Atopobium vaginae DSM 15829] gi|328944265|ref|ZP_08241729.1| YhgI protein [Atopobium vaginae DSM 15829] gi|327491184|gb|EGF22959.1| YhgI protein [Atopobium vaginae DSM 15829] Length = 189 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILN 177 + I E + +R ++ DGGDIV D G+V L M GAC+GCP ++ + GV IL Sbjct: 115 REILEATLDVIRESLQADGGDIVLVNVSDDGVVTLDMVGACAGCPMSAYDMSEGVERILK 174 Query: 178 HFVP 181 VP Sbjct: 175 EHVP 178 >gi|33239869|ref|NP_874811.1| NifU-like protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237395|gb|AAP99463.1| Thioredoxin family protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 81 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 1/66 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 +++VLD +RP + DGG++ IV + ++GAC CPS++ TLK G+ L + Sbjct: 13 VEKVLD-ELRPFLMADGGNVEIVEIDGPIVKVRLQGACGSCPSSTMTLKMGIERKLCEMI 71 Query: 181 PEVKDI 186 PEV ++ Sbjct: 72 PEVSEV 77 >gi|218186519|gb|EEC68946.1| hypothetical protein OsI_37662 [Oryza sativa Indica Group] Length = 221 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 ++ VLD +VRP + DGGD+ +V L ++GAC CPS+ T+K G+ L + Sbjct: 75 VESVLD-QVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIERRLMEKI 133 Query: 181 PEVKDIRTV 189 P+V + V Sbjct: 134 PDVAAVEPV 142 >gi|172035474|ref|YP_001801975.1| iron-sulfur cluster assembly protein [Cyanothece sp. ATCC 51142] gi|171696928|gb|ACB49909.1| iron-sulfur cluster assembly protein [Cyanothece sp. ATCC 51142] Length = 293 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 1/64 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV-ANILNHF 179 I++VL+ +RP +A+DGGD+ +V ++++GAC C S++ TLK G+ A + Sbjct: 225 IQQVLEEEIRPFLAKDGGDLELIDIEGDLVKVTLQGACGSCASSTATLKGGIEARLKERV 284 Query: 180 VPEV 183 PE+ Sbjct: 285 SPEL 288 >gi|115487614|ref|NP_001066294.1| Os12g0176200 [Oryza sativa Japonica Group] gi|75147032|sp|Q84LK7|NIFU1_ORYSJ RecName: Full=NifU-like protein 1, chloroplastic; AltName: Full=OsNifu1; Flags: Precursor gi|30698492|dbj|BAC76603.1| NifU1 [Oryza sativa Japonica Group] gi|77553807|gb|ABA96603.1| nitrogen fixation protein, putative, expressed [Oryza sativa Japonica Group] gi|113648801|dbj|BAF29313.1| Os12g0176200 [Oryza sativa Japonica Group] Length = 226 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 ++ VLD +VRP + DGGD+ +V L ++GAC CPS+ T+K G+ L + Sbjct: 80 VESVLD-QVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIERRLMEKI 138 Query: 181 PEVKDIRTV 189 P+V + V Sbjct: 139 PDVAAVEPV 147 >gi|8777425|dbj|BAA97015.1| unnamed protein product [Arabidopsis thaliana] Length = 684 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD +RP + DGG++ IV + ++GAC CPS++ T+K G+ L Sbjct: 88 ENVESVLDE-IRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRLME 146 Query: 179 FVPEV 183 +PE+ Sbjct: 147 KIPEI 151 >gi|239624672|ref|ZP_04667703.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|239521058|gb|EEQ60924.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 96 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 121 IKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 I+ VL+ VRP ++ GG + V +GI+++ M+G C+GCPSA ET+K V L Sbjct: 9 IEAVLNLFVRPQLSSHGGGLEVVDLDENGILWIEMQGGCAGCPSADETVKNLVQKELVTR 68 Query: 180 VPEVKDIR 187 +P++K + Sbjct: 69 IPQIKGVE 76 >gi|329767228|ref|ZP_08258755.1| hypothetical protein HMPREF0428_00452 [Gemella haemolysans M341] gi|328836895|gb|EGF86542.1| hypothetical protein HMPREF0428_00452 [Gemella haemolysans M341] Length = 84 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +IK L+ ++RP + +DGG+I F +++GI+ + G C+ C + TLKY + + Sbjct: 9 VDKIKFELE-KIRPKLIKDGGNIEFINFKNGILKIRFLGECAHCELSHITLKYAIEKTIV 67 Query: 178 HFVPEVKDI 186 +PEV + Sbjct: 68 EKIPEVNKV 76 >gi|256819880|ref|YP_003141159.1| nitrogen-fixing NifU domain-containing protein [Capnocytophaga ochracea DSM 7271] gi|256581463|gb|ACU92598.1| nitrogen-fixing NifU domain protein [Capnocytophaga ochracea DSM 7271] Length = 79 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLKYGVANILN 177 Q + + LD ++RP + DGGDI DG IV + + G C+ C TLK GV + Sbjct: 8 QEVIKALD-KIRPYLQNDGGDISLVDIEDGKIVKVRLEGTCTNCSVNQLTLKSGVEMTIK 66 Query: 178 HFVPEVKDIRTV 189 FVP+++ + +V Sbjct: 67 EFVPQIEKVISV 78 >gi|222616724|gb|EEE52856.1| hypothetical protein OsJ_35404 [Oryza sativa Japonica Group] Length = 219 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 ++ VLD +VRP + DGGD+ +V L ++GAC CPS+ T+K G+ L + Sbjct: 73 VESVLD-QVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIERRLMEKI 131 Query: 181 PEVKDIRTV 189 P+V + V Sbjct: 132 PDVAAVEPV 140 >gi|57864812|gb|AAW56987.1| nitrogen fixation protein U [Cyanothece sp. ATCC 51142] Length = 285 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 1/64 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV-ANILNHF 179 I++VL+ +RP +A+DGGD+ +V ++++GAC C S++ TLK G+ A + Sbjct: 217 IQQVLEEEIRPFLAKDGGDLELIDIEGDLVKVTLQGACGSCASSTATLKGGIEARLKERV 276 Query: 180 VPEV 183 PE+ Sbjct: 277 SPEL 280 >gi|21242852|ref|NP_642434.1| hypothetical protein XAC2117 [Xanthomonas axonopodis pv. citri str. 306] gi|51702177|sp|Q8PKQ2|NFUA_XANAC RecName: Full=Fe/S biogenesis protein nfuA gi|21108342|gb|AAM36970.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 199 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%) Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASE 166 G+ +++V+R++ V++N + P +A GG + + +G+V L G C GC A Sbjct: 100 GEAPAESASMVERVRWVVENEINPQLASHGGRVAVQEVSAEGVVLLRFGGGCHGCGMADV 159 Query: 167 TLKYGVANILNHFVPEVKDIR 187 TLK G+ L VP V +R Sbjct: 160 TLKQGIEKTLMGRVPGVTAVR 180 >gi|319787304|ref|YP_004146779.1| HesB/YadR/YfhF-family protein [Pseudoxanthomonas suwonensis 11-1] gi|317465816|gb|ADV27548.1| HesB/YadR/YfhF-family protein [Pseudoxanthomonas suwonensis 11-1] Length = 198 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVA 173 +++V+R++ V++N + P +A GG + DG V+L G C GC A TLK G+ Sbjct: 106 ASIVERVRWVMENEINPQLASHGGRATVEEVSADGTVWLRFGGGCHGCGMADVTLKQGIE 165 Query: 174 NILNHFVPEVKDIR 187 L VP V +R Sbjct: 166 KTLIARVPGVTAVR 179 >gi|67922888|ref|ZP_00516385.1| Aminotransferase, class V:Nitrogen-fixing NifU, C-terminal [Crocosphaera watsonii WH 8501] gi|67855238|gb|EAM50500.1| Aminotransferase, class V:Nitrogen-fixing NifU, C-terminal [Crocosphaera watsonii WH 8501] Length = 469 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV-ANILNHF 179 I+++L+ V+P +A+DGGDI +V + ++GAC CPS++ TLK + A + + Sbjct: 401 IQQILEEEVKPFLAQDGGDIDLYDIEGDLVKVVLKGACDACPSSTATLKLAIEARLKDRV 460 Query: 180 VPEVKDI 186 PE+ I Sbjct: 461 DPELTVI 467 >gi|302784594|ref|XP_002974069.1| hypothetical protein SELMODRAFT_16558 [Selaginella moellendorffii] gi|300158401|gb|EFJ25024.1| hypothetical protein SELMODRAFT_16558 [Selaginella moellendorffii] Length = 170 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 6/86 (6%) Query: 106 GSGDF-IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSA 164 GSG + E+ + + +VLD VRP + DGG++ DG V L ++ AC CPS+ Sbjct: 19 GSGLYSAETYDFTAENVDKVLD-EVRPYLVADGGNVAVVSVADGTVSLELQRACGTCPSS 77 Query: 165 SETLKYGVANILNH----FVPEVKDI 186 + T+K G+ +L V EV DI Sbjct: 78 TSTMKMGIERVLREKFGDAVKEVVDI 103 >gi|224130940|ref|XP_002320962.1| predicted protein [Populus trichocarpa] gi|222861735|gb|EEE99277.1| predicted protein [Populus trichocarpa] Length = 220 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 Q + VL+ VRP + DGG++ DG++ L ++GAC C S+ T+K G+ +L Sbjct: 77 QNVDLVLE-EVRPYLISDGGNVDVVSVEDGVITLKLQGACGNCASSETTMKMGIERVLKE 135 Query: 179 -FVPEVKDIRTV 189 F V+DIR + Sbjct: 136 KFGDAVQDIRQL 147 >gi|77917669|ref|YP_355484.1| Fe-S cluster assembly protein NifU [Pelobacter carbinolicus DSM 2380] gi|77543752|gb|ABA87314.1| Fe-S cluster assembly protein NifU [Pelobacter carbinolicus DSM 2380] Length = 281 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 S+ ++ I+E+L+ + P + DGGD+ V +++RG CS CP +S TLK+ V Sbjct: 203 SNLQKIRLIEEILEREILPPIRSDGGDLELIDIDGSKVLVALRGTCSFCPQSSFTLKHFV 262 Query: 173 ANILNHFV-PEVK 184 L FV PE++ Sbjct: 263 EAKLREFVSPEIE 275 >gi|18423084|ref|NP_568715.1| NFU2 (NIFU-LIKE PROTEIN 2); structural molecule [Arabidopsis thaliana] gi|75163219|sp|Q93W20|NIFU2_ARATH RecName: Full=NifU-like protein 2, chloroplastic; Short=AtCNfu2; Short=AtCnfU-V; Flags: Precursor gi|13878181|gb|AAK44168.1|AF370353_1 unknown protein [Arabidopsis thaliana] gi|16226434|gb|AAL16167.1|AF428399_1 AT5g49940/K9P8_8 [Arabidopsis thaliana] gi|17104539|gb|AAL34158.1| unknown protein [Arabidopsis thaliana] gi|26452324|dbj|BAC43248.1| unknown protein [Arabidopsis thaliana] gi|28207818|emb|CAD55559.1| NFU2 protein [Arabidopsis thaliana] gi|332008490|gb|AED95873.1| NifU-like protein 2 [Arabidopsis thaliana] Length = 235 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD +RP + DGG++ IV + ++GAC CPS++ T+K G+ L Sbjct: 88 ENVESVLDE-IRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRLME 146 Query: 179 FVPEV 183 +PE+ Sbjct: 147 KIPEI 151 >gi|325475673|gb|EGC78849.1| NifU domain-containing protein [Treponema denticola F0402] Length = 75 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 129 VRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 +RP + DGGDI + G V++ ++GAC CP A TLK GV L PEV ++ Sbjct: 14 IRPYLQADGGDIELDSVDEAGKVYVKLKGACGSCPMAIYTLKMGVEEQLKDMFPEVTEVV 73 Query: 188 TV 189 V Sbjct: 74 AV 75 >gi|163310812|pdb|2JNV|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like Protein From Oryza Sativa Length = 91 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 ++ VLD +VRP + DGGD+ +V L ++GAC CPS+ T+K G+ L + Sbjct: 10 VESVLD-QVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIERRLMEKI 68 Query: 181 PEVKDIRTV 189 P+V + V Sbjct: 69 PDVAAVEPV 77 >gi|90655381|gb|ABD96222.1| NifU-like protein [uncultured marine type-A Synechococcus GOM 3M9] Length = 81 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++VLD +RP + DGG++ IV + ++GAC CPS++ TLK G+ + Sbjct: 11 ENVEKVLDE-LRPFLMADGGNVEVVELDGPIVKVRLQGACGSCPSSTMTLKMGIERKMRE 69 Query: 179 FVPEVKDIRTV 189 +PEV ++ V Sbjct: 70 AIPEVSEVVQV 80 >gi|149374734|ref|ZP_01892507.1| Thioredoxin-like protein [Marinobacter algicola DG893] gi|149360623|gb|EDM49074.1| Thioredoxin-like protein [Marinobacter algicola DG893] Length = 195 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 ++ ++ + RI+ +L + + P +A GG++ + + + I L G C GC + S TLK Sbjct: 104 VDENAPLPDRIQYILASEINPNLAAHGGEVSLVEVAEESIAVLRFGGGCQGCSAVSLTLK 163 Query: 170 YGVANILNHFVPEVKDIRTV 189 GV + L VPE+ +R V Sbjct: 164 QGVESTLKERVPEITAVRDV 183 >gi|260436644|ref|ZP_05790614.1| NifU domain protein [Synechococcus sp. WH 8109] gi|260414518|gb|EEX07814.1| NifU domain protein [Synechococcus sp. WH 8109] Length = 76 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++ +++VLD +RP + DGG++ IV + ++GAC CPS++ TLK G+ + Sbjct: 5 LENVEKVLDE-LRPFLMADGGNVEVVELDGPIVKVRLQGACGSCPSSTMTLKMGIERKMR 63 Query: 178 HFVPEVKDIRTV 189 +PEV ++ V Sbjct: 64 ESIPEVSEVVQV 75 >gi|190575128|ref|YP_001972973.1| putative iron-sulphur cluster/NifU like protein [Stenotrophomonas maltophilia K279a] gi|254767331|sp|B2FM87|NFUA_STRMK RecName: Full=Fe/S biogenesis protein nfuA gi|190013050|emb|CAQ46682.1| putative iron-sulphur cluster/NifU like protein [Stenotrophomonas maltophilia K279a] Length = 199 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVA 173 +++V+R+ V++N + P +A GG + + +G+V L G C GC A TLK G+ Sbjct: 107 ASLVERVHWVVENEINPQLASHGGKVAVQEVSAEGVVLLRFGGGCQGCGMADVTLKQGIE 166 Query: 174 NILNHFVPEVKDIR 187 L VP V +R Sbjct: 167 KTLMGRVPGVTAVR 180 >gi|326526691|dbj|BAK00734.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 225 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 E++ + VRP + DGG++V +V L ++GAC CP++ T+K G+ L +PE Sbjct: 80 ELVLDEVRPYLMADGGNVVLHEIDGNVVRLKLQGACGSCPASVTTMKMGIERRLMEKIPE 139 Query: 183 V 183 + Sbjct: 140 I 140 >gi|194319991|pdb|2Z51|A Chain A, Crystal Structure Of Arabidopsis Cnfu Involved In Iron- Sulfur Cluster Biosynthesis Length = 154 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD +RP + DGG++ +V + ++GAC CPS++ T+K G+ L Sbjct: 7 ENVESVLDE-IRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLME 65 Query: 179 FVPEV 183 +PE+ Sbjct: 66 KIPEI 70 >gi|332878832|ref|ZP_08446547.1| NifU-like protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683183|gb|EGJ56065.1| NifU-like protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 78 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILN 177 + +K LD ++RP + DGGDI D IV + + G C+ C TLK GV + Sbjct: 8 EEVKNALD-KIRPYLQNDGGDITLVDIEDDKIVKVRLEGTCTNCAVNQMTLKSGVEMTIK 66 Query: 178 HFVPEVKDI 186 FVP+++ + Sbjct: 67 EFVPQIEQV 75 >gi|78185152|ref|YP_377587.1| NifU-like protein [Synechococcus sp. CC9902] gi|78169446|gb|ABB26543.1| NifU-like protein [Synechococcus sp. CC9902] Length = 81 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + + +++VLD +RP + DGG++ IV + ++GAC CPS++ TLK G Sbjct: 4 ETMALTLDNVEKVLDE-LRPFLMADGGNVEVVEIDGPIVKVRLQGACGSCPSSTMTLKMG 62 Query: 172 VANILNHFVPEVKDIRTV 189 + + +PEV ++ V Sbjct: 63 IERKMRESIPEVSEVVQV 80 >gi|34558002|ref|NP_907817.1| hypothetical protein WS1690 [Wolinella succinogenes DSM 1740] gi|34483720|emb|CAE10717.1| conserved hypothetical protein-Thioredoxin-like proteins and domains [Wolinella succinogenes] Length = 91 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 1/60 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD +++ ++ VL+ +VRP +A DGGD+ G V++ + GAC GC S++ TLK G+ Sbjct: 5 SDDDLLKPVERVLE-KVRPTLALDGGDVSLIGVAAPKVYVRLEGACKGCASSALTLKNGI 63 >gi|326530153|dbj|BAK08356.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 227 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 E++ + VRP + DGG++V +V L ++GAC CP++ T+K G+ L +PE Sbjct: 82 ELVLDEVRPYLMADGGNVVLHEIDGNVVRLKLQGACGSCPASVTTMKMGIERRLMEKIPE 141 Query: 183 V 183 + Sbjct: 142 I 142 >gi|15597044|ref|NP_250538.1| hypothetical protein PA1847 [Pseudomonas aeruginosa PAO1] gi|107101280|ref|ZP_01365198.1| hypothetical protein PaerPA_01002314 [Pseudomonas aeruginosa PACS2] gi|116049799|ref|YP_791394.1| hypothetical protein PA14_40630 [Pseudomonas aeruginosa UCBPP-PA14] gi|152984911|ref|YP_001348805.1| hypothetical protein PSPA7_3445 [Pseudomonas aeruginosa PA7] gi|218892197|ref|YP_002441064.1| hypothetical protein PLES_34781 [Pseudomonas aeruginosa LESB58] gi|254234942|ref|ZP_04928265.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254240240|ref|ZP_04933562.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296389760|ref|ZP_06879235.1| hypothetical protein PaerPAb_16491 [Pseudomonas aeruginosa PAb1] gi|313110548|ref|ZP_07796433.1| hypothetical protein PA39016_002410135 [Pseudomonas aeruginosa 39016] gi|51702153|sp|Q9I2P8|NFUA_PSEAE RecName: Full=Fe/S biogenesis protein nfuA gi|122258910|sp|Q02KZ2|NFUA_PSEAB RecName: Full=Fe/S biogenesis protein nfuA gi|254767309|sp|A6V6X0|NFUA_PSEA7 RecName: Full=Fe/S biogenesis protein nfuA gi|254767310|sp|B7VB28|NFUA_PSEA8 RecName: Full=Fe/S biogenesis protein nfuA gi|9947835|gb|AAG05236.1|AE004611_1 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115585020|gb|ABJ11035.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126166873|gb|EAZ52384.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126193618|gb|EAZ57681.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|150960069|gb|ABR82094.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] gi|218772423|emb|CAW28205.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58] gi|310882935|gb|EFQ41529.1| hypothetical protein PA39016_002410135 [Pseudomonas aeruginosa 39016] Length = 194 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETL 168 + DS + +RI L + P +A GG + + D I L G C GC TL Sbjct: 103 MVNEDSPITERINYYLQTEINPGLASHGGQVSLVDVVEDNIAVLRFGGGCQGCGMVDMTL 162 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K GV L +PE+K +R V Sbjct: 163 KDGVEKTLIERIPELKGVRDV 183 >gi|302792717|ref|XP_002978124.1| hypothetical protein SELMODRAFT_108525 [Selaginella moellendorffii] gi|300154145|gb|EFJ20781.1| hypothetical protein SELMODRAFT_108525 [Selaginella moellendorffii] Length = 185 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD VRP + DGG++ + +V L ++GAC CPS+ T+K G+ L Sbjct: 38 ENVEMVLDE-VRPYLMSDGGNVALEEIDGLVVKLKLQGACGSCPSSLMTMKMGIEARLKE 96 Query: 179 FVPEVKDIRTV 189 +PE+ + V Sbjct: 97 KIPEIIGVEQV 107 >gi|268323348|emb|CBH36936.1| conserved hypothetical protein, NifU-like domain family [uncultured archaeon] Length = 87 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANI 175 +++ +K V++ +RP + +GG I KG D G+V + + GAC+GCP + TL V Sbjct: 1 MLEEVKGVIEKDIRPLLEMEGGSIELKGVDDDGVVRVQLTGACAGCPMSQYTLVNFVEAT 60 Query: 176 LNHFVPEVKDI 186 L VP VK + Sbjct: 61 LKDKVPGVKQV 71 >gi|49082646|gb|AAT50723.1| PA1847 [synthetic construct] Length = 195 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETL 168 + DS + +RI L + P +A GG + + D I L G C GC TL Sbjct: 103 MVNEDSPITERINYYLQTEINPGLASHGGQVSLVDVVEDNIAVLRFGGGCQGCGMVDMTL 162 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K GV L +PE+K +R V Sbjct: 163 KDGVEKTLIERIPELKGVRDV 183 >gi|194366446|ref|YP_002029056.1| HesB/YadR/YfhF-family protein [Stenotrophomonas maltophilia R551-3] gi|254767330|sp|B4SPV3|NFUA_STRM5 RecName: Full=Fe/S biogenesis protein nfuA gi|194349250|gb|ACF52373.1| HesB/YadR/YfhF-family protein [Stenotrophomonas maltophilia R551-3] Length = 199 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVA 173 +++V+R+ V++N + P +A GG + + +G+V L G C GC A TLK G+ Sbjct: 107 ASLVERVHWVVENEINPQLASHGGKVAVQEVSAEGVVLLRFGGGCQGCGMADVTLKQGIE 166 Query: 174 NILNHFVPEVKDIR 187 L VP V +R Sbjct: 167 KTLMGRVPGVTAVR 180 >gi|254430627|ref|ZP_05044330.1| NifU domain protein [Cyanobium sp. PCC 7001] gi|197625080|gb|EDY37639.1| NifU domain protein [Cyanobium sp. PCC 7001] Length = 88 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++ ++ LD +RP + DGG++ IV + ++GAC CPS++ TLK G+ L Sbjct: 17 IENVERTLDE-LRPYLMADGGNVEVVEIDGPIVKVRLQGACGSCPSSTMTLKMGIERKLR 75 Query: 178 HFVPEVKDI 186 +PEV ++ Sbjct: 76 EAIPEVSEV 84 >gi|145334787|ref|NP_001078739.1| NFU2 (NIFU-LIKE PROTEIN 2); structural molecule [Arabidopsis thaliana] gi|222422967|dbj|BAH19468.1| AT5G49940 [Arabidopsis thaliana] gi|332008491|gb|AED95874.1| NifU-like protein 2 [Arabidopsis thaliana] Length = 185 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD +RP + DGG++ IV + ++GAC CPS++ T+K G+ L Sbjct: 88 ENVESVLDE-IRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRLME 146 Query: 179 FVPEV 183 +PE+ Sbjct: 147 KIPEI 151 >gi|317967928|ref|ZP_07969318.1| NifU-like protein [Synechococcus sp. CB0205] Length = 92 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++ ++ LD +RP + DGG++ IV + ++GAC CPS++ TLK G+ L Sbjct: 21 IENVERTLDE-LRPYLMADGGNVEVVEIDGPIVKVRLQGACGSCPSSTMTLKMGIERKLR 79 Query: 178 HFVPEVKDI 186 +PEV ++ Sbjct: 80 EAIPEVSEV 88 >gi|255083372|ref|XP_002504672.1| predicted protein [Micromonas sp. RCC299] gi|226519940|gb|ACO65930.1| predicted protein [Micromonas sp. RCC299] Length = 192 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Query: 106 GSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSAS 165 G E +++VLD VRP + DGGD+ +V L + GAC CPS++ Sbjct: 31 GESSISEKLELTADNVEKVLDE-VRPYLIADGGDVELVEIDGLVVRLKLNGACGSCPSST 89 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 T++ G+ L +PE+ ++ + Sbjct: 90 VTMRMGIEKRLMEKIPEIMEVEQI 113 >gi|193215039|ref|YP_001996238.1| nitrogen-fixing NifU domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193088516|gb|ACF13791.1| nitrogen-fixing NifU domain protein [Chloroherpeton thalassium ATCC 35110] Length = 95 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETL 168 ++ + + R+ E L N +RP + DGGD G D +V L + GAC CP ++ TL Sbjct: 15 YLPGNDPIYARVTEAL-NSIRPYLQADGGDCELVGITDEQVVDLRLVGACGSCPMSAMTL 73 Query: 169 KYGVANILNHFVPEV 183 + GV + VPE+ Sbjct: 74 RAGVEQAIKRAVPEI 88 >gi|226225813|ref|YP_002759919.1| hypothetical protein GAU_0407 [Gemmatimonas aurantiaca T-27] gi|226089004|dbj|BAH37449.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 296 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 R+ V++N +RP GGD+ VF+ + G+C+GC +S TL+ G+ L Sbjct: 105 RVARVVEN-LRPYTQSHGGDVTLVDVTSDTVFVKLSGSCNGCSMSSVTLRNGIEEALKEQ 163 Query: 180 VPEVKDIRTV 189 VPE+ I V Sbjct: 164 VPEITRIEVV 173 >gi|153833894|ref|ZP_01986561.1| thioredoxin [Vibrio harveyi HY01] gi|156972936|ref|YP_001443843.1| putative DNA uptake protein [Vibrio harveyi ATCC BAA-1116] gi|166990532|sp|A7MST1|NFUA_VIBHB RecName: Full=Fe/S biogenesis protein nfuA gi|148869732|gb|EDL68709.1| thioredoxin [Vibrio harveyi HY01] gi|156524530|gb|ABU69616.1| hypothetical protein VIBHAR_00614 [Vibrio harveyi ATCC BAA-1116] Length = 194 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +V+R++ V+ +V P +A GG + + + DGI ++ G C+GC TLK Sbjct: 103 VSDDAPLVERVEYVIQTQVNPQLAGHGGHVNLVEITDDGIAIVAFGGGCNGCSMVDVTLK 162 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN FV E+ +R Sbjct: 163 EGIEKELLNQFVGELTAVR 181 >gi|254228559|ref|ZP_04921984.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262392653|ref|YP_003284507.1| NfuA Fe-S protein maturation [Vibrio sp. Ex25] gi|151938941|gb|EDN57774.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262336247|gb|ACY50042.1| NfuA Fe-S protein maturation [Vibrio sp. Ex25] Length = 194 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +V+R++ V+ +V P +A GG + + + DGI ++ G C+GC TLK Sbjct: 103 VADDAPLVERVEYVIQTQVNPQLAGHGGHVNLVEITEDGIAIVAFGGGCNGCSMVDVTLK 162 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F+ E+ +R Sbjct: 163 EGIEKELLNQFIGELTAVR 181 >gi|320354901|ref|YP_004196240.1| Fe-S cluster assembly protein NifU [Desulfobulbus propionicus DSM 2032] gi|320123403|gb|ADW18949.1| Fe-S cluster assembly protein NifU [Desulfobulbus propionicus DSM 2032] Length = 278 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 38/65 (58%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +++I+EV++ ++P + +DGGDI V +S+RG+C+ C S+ TLK V L Sbjct: 206 IKKIEEVIEREIKPTLKKDGGDIQLIDVDGDFVTVSLRGSCANCYSSRTTLKEYVEKKLR 265 Query: 178 HFVPE 182 V E Sbjct: 266 EQVLE 270 >gi|284931439|gb|ADC31377.1| conserved hypothetical protein [Mycoplasma gallisepticum str. F] Length = 99 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 29/50 (58%) Query: 137 GGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 GGD+ F+GY GIV + + G C GC T K GV IL +PEVK + Sbjct: 27 GGDLSFEGYEKGIVTIRLLGNCDGCSLVDMTYKDGVETILKAEIPEVKSV 76 >gi|46580957|ref|YP_011765.1| NifU family protein [Desulfovibrio vulgaris str. Hildenborough] gi|46450377|gb|AAS97025.1| NifU family protein [Desulfovibrio vulgaris str. Hildenborough] Length = 81 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Query: 129 VRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 VRP + +DGGD+ +G+V + + G C GCP + +TLK V ++ FVP V+ + Sbjct: 18 VRPLLQQDGGDVELVDITPEGVVRVRLTGRCKGCPMSQKTLKNSVEKMVLKFVPAVQRVE 77 Query: 188 TV 189 V Sbjct: 78 AV 79 >gi|302342126|ref|YP_003806655.1| Fe-S cluster assembly protein NifU [Desulfarculus baarsii DSM 2075] gi|301638739|gb|ADK84061.1| Fe-S cluster assembly protein NifU [Desulfarculus baarsii DSM 2075] Length = 285 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 ++E L+ VRPA+ +DGGDI V +S+RG CS C ++ TL V L FV Sbjct: 215 VEETLEREVRPALKQDGGDIELIDIDGDKVLVSLRGMCSSCAASQATLSQFVQAKLREFV 274 Query: 181 PE 182 + Sbjct: 275 TD 276 >gi|237756604|ref|ZP_04585121.1| conserved domain protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237691235|gb|EEP60326.1| conserved domain protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 73 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 Q ++E+LD +VRPA+ D G+I + VFL + G C CP A T+K V + Sbjct: 8 QEVREILD-KVRPALLADAGNIELVKVENDEVFLKLYGTCQTCPVADMTMKDLVIYTIKE 66 Query: 179 FVPEVK 184 +P VK Sbjct: 67 SLPWVK 72 >gi|148252075|ref|YP_001236660.1| putative nitrogen-fixing NifU, Rieske (2Fe-2S) region [Bradyrhizobium sp. BTAi1] gi|146404248|gb|ABQ32754.1| putative nitrogen-fixing NifU , Rieske (2Fe-2S) region [Bradyrhizobium sp. BTAi1] Length = 289 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +R++ LD+ VRP +A GGD+ R + + GAC GCP+++ T GV + Sbjct: 96 ERLETALDS-VRPILASHGGDVELIAVRPPAIEVRFTGACDGCPASALTFHAGVKKAVEE 154 Query: 179 FVPEVKDIRTV 189 PE+ DI V Sbjct: 155 ACPEITDILQV 165 >gi|255637868|gb|ACU19253.1| unknown [Glycine max] Length = 219 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD +RP + DGG++ +V L ++GAC CPS+ T+K G+ L Sbjct: 72 ENVESVLDE-IRPYLIADGGNVALHQIDGNVVRLKLQGACGSCPSSVTTMKMGIERRLME 130 Query: 179 FVPEV 183 +PE+ Sbjct: 131 KIPEI 135 >gi|318040472|ref|ZP_07972428.1| NifU-like protein [Synechococcus sp. CB0101] Length = 96 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++ ++ LD +RP + DGG++ IV + ++GAC CPS++ TLK G+ L Sbjct: 25 IENVERTLDE-LRPYLMADGGNVEVVEIDGPIVKVRLQGACGSCPSSTMTLKMGIERKLR 83 Query: 178 HFVPEVKDI 186 +PEV ++ Sbjct: 84 EAIPEVSEV 92 >gi|295098862|emb|CBK87951.1| Thioredoxin-like proteins and domains [Eubacterium cylindroides T2-87] Length = 83 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 123 EVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILNHFVP 181 E +++RP + DGGDI G + V+++ RGAC+GC A+E G+ +L VP Sbjct: 15 EACLDKIRPYIQHDGGDIELLGIDEHAYVYVAFRGACAGCMMATEDFSSGIKLLLMDEVP 74 Query: 182 EVKDIRTV 189 ++D+ V Sbjct: 75 GIRDVILV 82 >gi|188997215|ref|YP_001931466.1| nitrogen-fixing NifU domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932282|gb|ACD66912.1| nitrogen-fixing NifU domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 84 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 Q ++E+LD +VRPA+ D G+I + VFL + G C CP A T+K V + Sbjct: 8 QEVREILD-KVRPALLADAGNIELVKVENDEVFLKLYGTCQTCPVADMTMKDLVIYTIKE 66 Query: 179 FVPEVKDI 186 +P VK + Sbjct: 67 SLPWVKAV 74 >gi|307105277|gb|EFN53527.1| hypothetical protein CHLNCDRAFT_58507 [Chlorella variabilis] Length = 496 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V+ + LD+ VRP + DGG++ DG VFL ++GAC CPS++ T+K G+ L Sbjct: 340 TVEAVDAALDD-VRPYLIADGGNVDVVAVEDGRVFLQLQGACGTCPSSTATMKMGIERSL 398 Query: 177 N 177 Sbjct: 399 K 399 >gi|269959406|ref|ZP_06173789.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835843|gb|EEZ89919.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 194 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +V+R++ V+ +V P +A GG + + + DGI ++ G C+GC TLK Sbjct: 103 VADDAPLVERVEYVIQTQVNPQLAGHGGHVNLVEITDDGIAIVAFGGGCNGCSMVDVTLK 162 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN FV E+ +R Sbjct: 163 EGIEKELLNQFVGELTAVR 181 >gi|75910444|ref|YP_324740.1| Fe-S cluster assembly protein NifU [Anabaena variabilis ATCC 29413] gi|1236928|gb|AAA93019.1| NifU2 [Anabaena variabilis ATCC 29413] gi|75704169|gb|ABA23845.1| Fe-S cluster assembly protein NifU [Anabaena variabilis ATCC 29413] Length = 309 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 37/69 (53%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I++VLD VRP + DGGDI + V + ++GAC CPS++ TLK V L V Sbjct: 231 IQKVLDEEVRPLLIADGGDIELYDVQGDNVQVVLQGACGSCPSSTATLKVAVEAKLQERV 290 Query: 181 PEVKDIRTV 189 + + V Sbjct: 291 SQSLRVEAV 299 >gi|242082972|ref|XP_002441911.1| hypothetical protein SORBIDRAFT_08g004740 [Sorghum bicolor] gi|241942604|gb|EES15749.1| hypothetical protein SORBIDRAFT_08g004740 [Sorghum bicolor] Length = 227 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 ++ VLD VRP + DGGD+ +V L ++GAC CPS+ T+K + L + Sbjct: 81 VESVLDE-VRPYLIADGGDVALHEINGNVVRLKLQGACGSCPSSVTTMKMRIQRRLMENI 139 Query: 181 PEVKDIRTV 189 PE+ + V Sbjct: 140 PEISAVERV 148 >gi|108805648|ref|YP_645585.1| nitrogen-fixing NifU-like protein [Rubrobacter xylanophilus DSM 9941] gi|108766891|gb|ABG05773.1| nitrogen-fixing NifU-like protein [Rubrobacter xylanophilus DSM 9941] Length = 80 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 3/81 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGD--IVFKGYRDGIVFLSMRGACSGCPSASETL 168 +E+ + R++ L +VRPA+ DGGD +V G V + M GACSGCP + Sbjct: 1 MEAKPDMRSRVEAAL-GKVRPAMQADGGDARVVDCDEETGSVKIQMLGACSGCPLSQLDF 59 Query: 169 KYGVANILNHFVPEVKDIRTV 189 Y + +++ VPEV++I V Sbjct: 60 VYAIESLIRREVPEVREILAV 80 >gi|120601745|ref|YP_966145.1| NifU domain-containing protein [Desulfovibrio vulgaris DP4] gi|120561974|gb|ABM27718.1| nitrogen-fixing NifU domain protein [Desulfovibrio vulgaris DP4] gi|311234644|gb|ADP87498.1| nitrogen-fixing NifU domain protein [Desulfovibrio vulgaris RCH1] Length = 75 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Query: 129 VRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 VRP + +DGGD+ +G+V + + G C GCP + +TLK V ++ FVP V+ + Sbjct: 12 VRPLLQQDGGDVELVDITPEGVVRVRLTGRCKGCPMSQKTLKNSVEKMVLKFVPAVQRVE 71 Query: 188 TV 189 V Sbjct: 72 AV 73 >gi|225448154|ref|XP_002264418.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297739542|emb|CBI29724.3| unnamed protein product [Vitis vinifera] Length = 227 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 6/75 (8%) Query: 114 DSAV-----VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 DSAV + ++ VLD +RP + DGG++ +V L ++GAC CPS+ T+ Sbjct: 70 DSAVELPLTAENVESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTM 128 Query: 169 KYGVANILNHFVPEV 183 K G+ L +PE+ Sbjct: 129 KMGIERRLMEKIPEI 143 >gi|303290897|ref|XP_003064735.1| predicted protein [Micromonas pusilla CCMP1545] gi|226453761|gb|EEH51069.1| predicted protein [Micromonas pusilla CCMP1545] Length = 153 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++VLD VRP + DGGD+ +V L + GAC CPS++ T++ G+ L Sbjct: 6 ENVEKVLDE-VRPYLIADGGDVELVEIDGLVVRLKLNGACGSCPSSTVTMRMGIERRLLE 64 Query: 179 FVPEV 183 +PE+ Sbjct: 65 VIPEI 69 >gi|88809237|ref|ZP_01124746.1| NifU-like protein [Synechococcus sp. WH 7805] gi|88787179|gb|EAR18337.1| NifU-like protein [Synechococcus sp. WH 7805] Length = 81 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++VLD +RP + DGG++ +V + ++GAC CPS++ TLK G+ + Sbjct: 11 ENVEKVLDE-LRPFLMADGGNVEVVEIDGPVVKVRLQGACGSCPSSTMTLKMGIERKMRE 69 Query: 179 FVPEVKDI 186 +PEV ++ Sbjct: 70 TIPEVSEV 77 >gi|417363|sp|P33179|NIFU_ANASL RecName: Full=Nitrogen fixation protein nifU gi|2126543|pir||I39609 nifU protein - Anabaena sp. (fragment) gi|142056|gb|AAA22013.1| NifU [Anabaena sp. L-31] Length = 112 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 I++VLD VRP + DGGD+ IV + ++GAC CPS++ TLK + + L Sbjct: 44 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCPSSTATLKIAIESRL 99 >gi|148238937|ref|YP_001224324.1| NifU-like protein [Synechococcus sp. WH 7803] gi|147847476|emb|CAK23027.1| NifU-like protein [Synechococcus sp. WH 7803] Length = 81 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++VLD +RP + DGG++ +V + ++GAC CPS++ TLK G+ + Sbjct: 11 ENVEKVLDE-LRPFLMADGGNVEVVEIDGPVVKVRLQGACGSCPSSTMTLKMGIERKMRE 69 Query: 179 FVPEVKDIRTV 189 +PEV ++ V Sbjct: 70 AIPEVSEVVQV 80 >gi|311694682|gb|ADP97555.1| yhgI protein [marine bacterium HP15] Length = 195 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 I+ D+ + R+ +L + + P +A GG++ D + L G C GC + S TLK Sbjct: 104 IDDDAPLPDRVNYILASEINPNLAAHGGEVSLVEIVDESVAVLRFGGGCQGCSAVSLTLK 163 Query: 170 YGVANILNHFVPEVKDIRTV 189 GV + L VPE+ +R V Sbjct: 164 QGVESTLKERVPEITAVRDV 183 >gi|116073290|ref|ZP_01470552.1| NifU-like protein [Synechococcus sp. RS9916] gi|116068595|gb|EAU74347.1| NifU-like protein [Synechococcus sp. RS9916] Length = 81 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++VLD +RP + DGG++ +V + ++GAC CPS++ TLK G+ + Sbjct: 11 ENVEKVLDE-LRPFLMADGGNVEVVEIDGPVVKVRLQGACGSCPSSTMTLKMGIERKMRE 69 Query: 179 FVPEVKDI 186 +PEV ++ Sbjct: 70 AIPEVSEV 77 >gi|83815451|ref|YP_444955.1| hypothetical protein SRU_0820 [Salinibacter ruber DSM 13855] gi|294506813|ref|YP_003570871.1| hypothetical protein SRM_00998 [Salinibacter ruber M8] gi|83756845|gb|ABC44958.1| conserved domain protein [Salinibacter ruber DSM 13855] gi|294343141|emb|CBH23919.1| conserved hypothetical protein [Salinibacter ruber M8] Length = 101 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 2/77 (2%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 D + I+E LD +RP + DGG + + D +V L + GAC CP ++ TL+ G+ Sbjct: 20 DPELRDNIEEALDT-IRPYLMADGGSVRLLNVTADYVVELELLGACGSCPMSTMTLRAGI 78 Query: 173 ANILNHFVPEVKDIRTV 189 L VP+VK + V Sbjct: 79 EQALKRSVPKVKRVEAV 95 >gi|125995235|dbj|BAF47150.1| NifU [Gloeothece sp. KO68DGA] Length = 293 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 1/64 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV-ANILNHF 179 I++VL+ V+PA+A+DGGD +V + ++GAC C S+++TLK + A + + Sbjct: 225 IQQVLEEEVKPALAQDGGDCDLFDVDGDLVKVVLKGACGSCASSTQTLKIAIEARLRDRI 284 Query: 180 VPEV 183 PE+ Sbjct: 285 SPEL 288 >gi|303233008|ref|ZP_07319687.1| NifU-like protein [Atopobium vaginae PB189-T1-4] gi|302480879|gb|EFL43960.1| NifU-like protein [Atopobium vaginae PB189-T1-4] Length = 178 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANI 175 + + I E + +R ++ DGGD+V D G+V L M GAC+GCP + + G+ I Sbjct: 102 INREILEATIDVIRESLQADGGDVVLVNVSDDGVVTLEMTGACAGCPLSEYDMTEGIERI 161 Query: 176 LNHFVPEVKDIR 187 L VP V + Sbjct: 162 LKEHVPGVTKVE 173 >gi|255576215|ref|XP_002529001.1| Nitrogen fixation protein nifU, putative [Ricinus communis] gi|223531541|gb|EEF33371.1| Nitrogen fixation protein nifU, putative [Ricinus communis] Length = 226 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD VRP + DGG++ +V L ++GAC CPS+ T+K G+ L Sbjct: 79 ENVESVLDE-VRPYLIADGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLME 137 Query: 179 FVPEV 183 +PE+ Sbjct: 138 KIPEI 142 >gi|323483740|ref|ZP_08089120.1| nitrogen-fixing NifU domain-containing protein [Clostridium symbiosum WAL-14163] gi|323692707|ref|ZP_08106936.1| nitrogen-fixing NifU domain-containing protein [Clostridium symbiosum WAL-14673] gi|323402931|gb|EGA95249.1| nitrogen-fixing NifU domain-containing protein [Clostridium symbiosum WAL-14163] gi|323503261|gb|EGB19094.1| nitrogen-fixing NifU domain-containing protein [Clostridium symbiosum WAL-14673] Length = 118 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMR--GACSGCPSASETLKYGV 172 + +++RI++VL+ VRP++ G++ Y + L +R G CSGCPSA T + + Sbjct: 2 AEMIERIEKVLEQDVRPSLLSHEGNVQIVSYEEKSKILRVRLTGQCSGCPSAQLTTEEVI 61 Query: 173 ANILNHFVPEVKDI 186 + +PEV+ + Sbjct: 62 EKAVKEKIPEVEQV 75 >gi|302766397|ref|XP_002966619.1| hypothetical protein SELMODRAFT_230831 [Selaginella moellendorffii] gi|300166039|gb|EFJ32646.1| hypothetical protein SELMODRAFT_230831 [Selaginella moellendorffii] Length = 144 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%) Query: 124 VLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEV 183 VLD VRP + DGG++ + +V L ++GAC CPS+ T+K G+ L +PE+ Sbjct: 2 VLDE-VRPYLMSDGGNVALEEIDGLVVKLKLQGACGSCPSSLMTMKMGIEARLKEKIPEI 60 Query: 184 KDIRTV 189 + V Sbjct: 61 IGVEQV 66 >gi|92114011|ref|YP_573939.1| HesB/YadR/YfhF [Chromohalobacter salexigens DSM 3043] gi|91797101|gb|ABE59240.1| HesB/YadR/YfhF [Chromohalobacter salexigens DSM 3043] Length = 196 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + +DS + R+ VL + + P +A GG+I + + + + L G C GC + TLK Sbjct: 105 VNADSPLEDRVNYVLYSEINPGLAAHGGEIRLMQLTEENVAVLQFGGGCQGCAAVDLTLK 164 Query: 170 YGVANILNHFVPEVKDIRTV 189 GV L VPE+ IR V Sbjct: 165 EGVEKTLIERVPELAGIRDV 184 >gi|148241647|ref|YP_001226804.1| NifU-like protein [Synechococcus sp. RCC307] gi|147849957|emb|CAK27451.1| NifU-like protein [Synechococcus sp. RCC307] Length = 88 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++ ++ LD +RP + DGG++ IV + ++GAC CPS++ TLK G+ L Sbjct: 17 LENVERTLDE-LRPFLMADGGNVEVVEIDGPIVKVRLQGACGSCPSSTMTLKMGIERKLR 75 Query: 178 HFVPEVKDI 186 +PEV ++ Sbjct: 76 EAIPEVSEV 84 >gi|91224982|ref|ZP_01260241.1| hypothetical protein V12G01_11188 [Vibrio alginolyticus 12G01] gi|269965876|ref|ZP_06179969.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|91190228|gb|EAS76498.1| hypothetical protein V12G01_11188 [Vibrio alginolyticus 12G01] gi|269829429|gb|EEZ83670.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 194 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +V+R++ V+ +V P +A GG + + + DG+ ++ G C+GC TLK Sbjct: 103 VADDAPLVERVEYVIQTQVNPQLAGHGGHVNLVEITEDGVAIVAFGGGCNGCSMVDVTLK 162 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F+ E+ +R Sbjct: 163 EGIEKELLNQFIGELTAVR 181 >gi|212711654|ref|ZP_03319782.1| hypothetical protein PROVALCAL_02729 [Providencia alcalifaciens DSM 30120] gi|212685756|gb|EEB45284.1| hypothetical protein PROVALCAL_02729 [Providencia alcalifaciens DSM 30120] Length = 192 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 79/172 (45%), Gaps = 16/172 (9%) Query: 29 HFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFIS 87 HF+ E++ S R+F I PG + G + G + + L+ L ++ + Sbjct: 11 HFAKLLESQESGTQIRVFVINPGTPTAECGVSYCPPGAVEATDKELKFEKLSAYVDEISA 70 Query: 88 GDPIIHNGGLGDMKLDDMGSGDFIES----------DSAVVQRIKEVLDNRVRPAVARDG 137 P + + + D D +GS +++ D+ +++R++ VL +++ P +A G Sbjct: 71 --PFLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVSDDAPLIERVEYVLQSQINPQLASHG 127 Query: 138 GDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGV-ANILNHFVPEVKDIR 187 G + + + +G L G C+GC TLK G+ +L F E+K ++ Sbjct: 128 GRVSLMEITEEGFAILQFGGGCNGCSMVDVTLKEGIEKELLKMFEGELKGVK 179 >gi|113954347|ref|YP_729865.1| NifU domain-containing protein [Synechococcus sp. CC9311] gi|113881698|gb|ABI46656.1| NifU domain protein [Synechococcus sp. CC9311] Length = 81 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++VLD +RP + DGG++ +V + ++GAC CPS++ TLK G+ + Sbjct: 11 ENVEKVLDE-LRPFLMADGGNVEVVEIDGPVVKVRLQGACGSCPSSTMTLKMGIERKMRE 69 Query: 179 FVPEVKDI 186 +PEV ++ Sbjct: 70 SIPEVSEV 77 >gi|37524219|ref|NP_927563.1| putative DNA uptake protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|51701988|sp|Q7N9W2|NFUA_PHOLL RecName: Full=Fe/S biogenesis protein nfuA gi|36783642|emb|CAE12493.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 191 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + DS + +R++ VL +++ P +A GG + + + DG L G C+GC TLK Sbjct: 101 VSDDSPLAERVEYVLQSQINPQLAGHGGRVSLMEITDDGFAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L + PE+K ++ Sbjct: 161 EGIEKELLNMFPELKGVK 178 >gi|116750110|ref|YP_846797.1| Fe-S cluster assembly protein NifU [Syntrophobacter fumaroxidans MPOB] gi|116699174|gb|ABK18362.1| Fe-S cluster assembly protein NifU [Syntrophobacter fumaroxidans MPOB] Length = 276 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++ I+E +D +RP++ +DGGDI V ++ RGAC+ C +A+ TLK V L Sbjct: 203 IRLIEETIDQEIRPSLKQDGGDIELVDVVGNRVLVATRGACASCQAANRTLKNFVEVKLR 262 Query: 178 HFV-PEV 183 V PE+ Sbjct: 263 ELVLPEL 269 >gi|163802249|ref|ZP_02196144.1| hypothetical protein 1103602000603_AND4_17694 [Vibrio sp. AND4] gi|159174054|gb|EDP58864.1| hypothetical protein AND4_17694 [Vibrio sp. AND4] Length = 194 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +V+R++ V+ +V P +A GG + + + DGI ++ G C+GC TLK Sbjct: 103 VADDAPLVERVEYVIQTQVNPQLAGHGGHVNLVEITDDGIAIVAFGGGCNGCSMVDVTLK 162 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F+ E+ +R Sbjct: 163 EGIEKELLNQFIGELTAVR 181 >gi|195941174|ref|ZP_03086556.1| putative DNA uptake protein [Escherichia coli O157:H7 str. EC4024] Length = 152 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 3/79 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L +++ P +A GG + + + DG+ L G C+GC TLK Sbjct: 62 VSDDAPLMERVEYLLQSQINPQLAGHGGRVSLMEITEDGLAILQFGGGCNGCSMVDVTLK 121 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F PE+K +R Sbjct: 122 EGIEKQMLNEF-PELKGVR 139 >gi|226942441|ref|YP_002797514.1| NifU C-terminal domain-containing protein VnfU [Azotobacter vinelandii DJ] gi|732317|sp|P40432|YVN2_AZOVI RecName: Full=Uncharacterized 10.3 kDa protein in vnfA 5'region gi|1088269|gb|AAA82515.1| unknown protein [Azotobacter vinelandii] gi|226717368|gb|ACO76539.1| NifU C-terminal domain-containing protein, VnfU [Azotobacter vinelandii DJ] Length = 96 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 ++E ++ R+RP V RDGGD+ +D IV L ++GAC GC +++TL Sbjct: 28 VRETVE-RLRPGVQRDGGDLELVAVQDNIVRLRLKGACVGCAMSAQTL 74 >gi|293393405|ref|ZP_06637716.1| Fe/S-biogenesis protein NfuA [Serratia odorifera DSM 4582] gi|291424006|gb|EFE97224.1| Fe/S-biogenesis protein NfuA [Serratia odorifera DSM 4582] Length = 191 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 ++ ++ +++R++ VL +++ P +A GG + + + DG+ L G C+GC TLK Sbjct: 101 VDENAPLMERVEYVLQSQINPQLAGHGGRVTLMEITEDGLAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 EGIEKELLQKFPELKGVR 178 >gi|149371976|ref|ZP_01891295.1| nifU-like domain protein [unidentified eubacterium SCB49] gi|149355116|gb|EDM43677.1| nifU-like domain protein [unidentified eubacterium SCB49] Length = 80 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASETLKYGVANILNHFVP 181 E+ + +RP + DGGDI+ G DG V + ++GAC GC TLK GV + P Sbjct: 11 EIALDEIRPFLQTDGGDILLLGIEDGTTVKVQLQGACVGCSVNQMTLKSGVEMTIKKHAP 70 Query: 182 EVKDIRTV 189 +++ + V Sbjct: 71 QIERVINV 78 >gi|295097023|emb|CBK86113.1| IscR-regulated protein YhgI [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 191 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 3/79 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L +++ P +A GG + + + DG+ L G C+GC TLK Sbjct: 101 VSDDAPLMERVEYLLQSQINPQLAGHGGRVSLMEITEDGLAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F PE+K +R Sbjct: 161 EGIEKQLLNEF-PELKGVR 178 >gi|91794875|ref|YP_564526.1| putative DNA uptake protein [Shewanella denitrificans OS217] gi|119370613|sp|Q12IC3|NFUA_SHEDO RecName: Full=Fe/S biogenesis protein nfuA gi|91716877|gb|ABE56803.1| HesB/YadR/YfhF [Shewanella denitrificans OS217] Length = 192 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +V+RI+ V+ + + P +A GG+I+ + DG+ L G C+GC TLK Sbjct: 101 VSGDAPLVERIEYVIQSEINPQLASHGGNIMLVEVTDDGVAVLQFGGGCNGCSQVDITLK 160 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L+ F E+ +R V Sbjct: 161 DGIEKQLLDLFTGELTGVRDV 181 >gi|253746010|gb|EET01549.1| Hypothetical protein GL50581_1173 [Giardia intestinalis ATCC 50581] Length = 197 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 12/160 (7%) Query: 37 EISPLASRIFSIPGIASVYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNG 95 E S L + + G+ + +TV + Q W +R + I F P H Sbjct: 41 EASSLQCDLLKVKGVKKLSITPTGVTVTVRSQGLWPSIRSEIENKIYSAFDPDTP--HTP 98 Query: 96 GLGDMKLDD-MGSGDFIESDSAVVQRIKEVL-DNRVRPAVARDGGDIVFKGYRDG----I 149 + + D + +G S+ +++ E+L + P +ARDGG +K Y I Sbjct: 99 DELRLAIQDILSTGSLSPSN---IRKASELLIRAAINPFLARDGGSCSYKRYESTDEGLI 155 Query: 150 VFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 V++ + G CSGC ++ T+ V ++P V ++ + Sbjct: 156 VYIELHGNCSGCSKSANTMNNFVIGEFKKYIPNVSTVKCI 195 >gi|218185367|gb|EEC67794.1| hypothetical protein OsI_35353 [Oryza sativa Indica Group] Length = 228 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 E++ + VRP + DGG++ +V L ++GAC CP++ T+K G+ L +PE Sbjct: 83 EIVLDEVRPYLMADGGNVALHEIDGNVVRLKLQGACGSCPASVTTMKMGIERRLMEKIPE 142 Query: 183 V 183 + Sbjct: 143 I 143 >gi|115484477|ref|NP_001065900.1| Os11g0181500 [Oryza sativa Japonica Group] gi|108864066|gb|ABG22389.1| nitrogen fixation protein, putative, expressed [Oryza sativa Japonica Group] gi|113644604|dbj|BAF27745.1| Os11g0181500 [Oryza sativa Japonica Group] gi|215695304|dbj|BAG90495.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765607|dbj|BAG87304.1| unnamed protein product [Oryza sativa Japonica Group] gi|222615626|gb|EEE51758.1| hypothetical protein OsJ_33192 [Oryza sativa Japonica Group] Length = 228 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 E++ + VRP + DGG++ +V L ++GAC CP++ T+K G+ L +PE Sbjct: 83 EIVLDEVRPYLMADGGNVALHEIDGNVVRLKLQGACGSCPASVTTMKMGIERRLMEKIPE 142 Query: 183 V 183 + Sbjct: 143 I 143 >gi|290473229|ref|YP_003466094.1| Fe/S biogenesis protein [Xenorhabdus bovienii SS-2004] gi|289172527|emb|CBJ79294.1| Fe/S biogenesis protein [Xenorhabdus bovienii SS-2004] Length = 191 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ VL +++ P +A GG + D G L G C+GC TLK Sbjct: 101 VTDDAPLIERVEYVLQSQINPQLAGHGGRVSLMEITDAGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L + PE+K +R Sbjct: 161 EGIEKELLNMFPELKGVR 178 >gi|170078022|ref|YP_001734660.1| NifU like protein [Synechococcus sp. PCC 7002] gi|169885691|gb|ACA99404.1| NifU like protein [Synechococcus sp. PCC 7002] Length = 78 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ LD +RP + DGG++ +V L ++GAC CPS++ TL+ G+ L Sbjct: 6 TTENVEATLDE-LRPYLKADGGNVELVEIDGPVVKLRLQGACGSCPSSTMTLRMGIERRL 64 Query: 177 NHFVPEVKDIRTV 189 +PE+ ++ V Sbjct: 65 RENIPEIAEVEQV 77 >gi|261341914|ref|ZP_05969772.1| IscR-regulated protein YhgI [Enterobacter cancerogenus ATCC 35316] gi|288315816|gb|EFC54754.1| IscR-regulated protein YhgI [Enterobacter cancerogenus ATCC 35316] Length = 191 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 3/79 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L +++ P +A GG + + + DG+ L G C+GC TLK Sbjct: 101 VSDDAPLMERVEYMLQSQINPQLAGHGGRVTLMEITEDGLAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F PE+K +R Sbjct: 161 EGIEKQLLNEF-PELKGVR 178 >gi|110596893|ref|ZP_01385183.1| Nitrogen-fixing NifU-like [Chlorobium ferrooxidans DSM 13031] gi|110341580|gb|EAT60040.1| Nitrogen-fixing NifU-like [Chlorobium ferrooxidans DSM 13031] Length = 86 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSAS 165 S D++ + A+ R+ L+ VRP + DGGD G +D +V + + GAC CP ++ Sbjct: 4 SKDYLPNSDAIYDRVIAALET-VRPYLQVDGGDCQLVGISKDMVVDVKLLGACGSCPMST 62 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TL+ GV + PE+ + +V Sbjct: 63 LTLRAGVEQAIKKANPEIVRVESV 86 >gi|189500939|ref|YP_001960409.1| nitrogen-fixing NifU domain-containing protein [Chlorobium phaeobacteroides BS1] gi|189496380|gb|ACE04928.1| nitrogen-fixing NifU domain protein [Chlorobium phaeobacteroides BS1] Length = 86 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSAS 165 + D++ + R+ + L+ VRP + DGGD G +D +V + + GAC CP ++ Sbjct: 4 TKDYLPDTDPLYDRVIKALEE-VRPYLQADGGDCQLVGITKDMLVDVKLLGACGSCPMST 62 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TL+ GV + VPE+ + V Sbjct: 63 LTLRAGVEQAIKKAVPEIARVEAV 86 >gi|225849266|ref|YP_002729430.1| hypothetical protein SULAZ_1463 [Sulfurihydrogenibium azorense Az-Fu1] gi|225643887|gb|ACN98937.1| conserved domain protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 84 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 Q +KEVL+ ++RPA+ D G I + VFL + G C CP A T+K V + Sbjct: 8 QEVKEVLE-KIRPALMADAGKIDLVKIENDEVFLKLYGTCQTCPVADMTMKDLVVYTIKE 66 Query: 179 FVPEVK 184 +P VK Sbjct: 67 SLPWVK 72 >gi|83645334|ref|YP_433769.1| thioredoxin-like protein [Hahella chejuensis KCTC 2396] gi|83633377|gb|ABC29344.1| Thioredoxin-like protein [Hahella chejuensis KCTC 2396] Length = 192 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 37/77 (48%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 ++ S + RI +L + P +A GG++ D + L G C GC + TLK Sbjct: 102 VDESSPLPDRINYILYTEINPGLASHGGEVSLVEVVDDVAVLKFGGGCQGCSAVDFTLKQ 161 Query: 171 GVANILNHFVPEVKDIR 187 GV L +PE+K +R Sbjct: 162 GVEKTLLSKIPELKGVR 178 >gi|254480747|ref|ZP_05093994.1| IscR-regulated protein YhgI [marine gamma proteobacterium HTCC2148] gi|214039330|gb|EEB79990.1| IscR-regulated protein YhgI [marine gamma proteobacterium HTCC2148] Length = 191 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 ++ +S + RI VL N V PA+A GG++ + + D L G C GC + +TLK Sbjct: 101 VDENSPMEDRINYVLYNEVNPALAAHGGEVSLVEITEDNFAVLRFGGGCQGCSAVDQTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 GV L +P++ +R Sbjct: 161 GGVEKTLLEQLPQLAGVR 178 >gi|285018390|ref|YP_003376101.1| protein gnty [Xanthomonas albilineans GPE PC73] gi|283473608|emb|CBA16111.1| probable protein gnty [Xanthomonas albilineans] Length = 198 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVA 173 +++V+R++ V++N V P +A GG + + DG+V L G C GC A TLK G+ Sbjct: 106 ASLVERVRWVVENEVNPQLAEHGGRVAVQEVSADGVVVLRFGGGCHGCGMADVTLKQGIE 165 Query: 174 NILNHFVPEVKDIR 187 L V V +R Sbjct: 166 KTLMGRVSGVTAVR 179 >gi|146313459|ref|YP_001178533.1| putative DNA uptake protein [Enterobacter sp. 638] gi|166990523|sp|A4WFK2|NFUA_ENT38 RecName: Full=Fe/S biogenesis protein nfuA gi|145320335|gb|ABP62482.1| HesB/YadR/YfhF-family protein [Enterobacter sp. 638] Length = 191 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 3/79 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L +++ P +A GG + + + DG+ L G C+GC TLK Sbjct: 101 VSDDAPLMERVEYLLQSQINPQLAGHGGRVTLMEITEDGLAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F PE+K +R Sbjct: 161 EGIEKQMLNEF-PELKGVR 178 >gi|194337374|ref|YP_002019168.1| nitrogen-fixing NifU domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194309851|gb|ACF44551.1| nitrogen-fixing NifU domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 86 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSAS 165 + D++ + A+ R+ L+ VRP + DGGD G +D V + + GAC CP ++ Sbjct: 4 TKDYLPNSDALYDRVIAALET-VRPYLQVDGGDCQIVGITKDMTVDVKLLGACGSCPMST 62 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TL+ GV + VPE+ + +V Sbjct: 63 LTLRAGVEQAIKKAVPEIVRVESV 86 >gi|320354022|ref|YP_004195361.1| nitrogen-fixing NifU domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320122524|gb|ADW18070.1| nitrogen-fixing NifU domain protein [Desulfobulbus propionicus DSM 2032] Length = 77 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Query: 128 RVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 ++RP + RDGGD+ F D I+ + + GAC GCP + TLK G+ + +P ++ + Sbjct: 14 QIRPTLQRDGGDVEFVELGPDQILKVRLTGACQGCPMSRITLKEGIEKFVKGELPTIRAV 73 Query: 187 RTV 189 V Sbjct: 74 EAV 76 >gi|253987620|ref|YP_003038976.1| DNA uptake protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779070|emb|CAQ82230.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 191 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +V+R++ VL +++ P +A GG + D G L G C+GC TLK Sbjct: 101 VSDDAPLVERVEYVLQSQINPQLAGHGGRVSLMEITDEGFAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L + PE+K ++ Sbjct: 161 EGIEKELLNMFPELKGVK 178 >gi|68349029|gb|AAY96420.1| YhgI [Halomonas elongata] Length = 196 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + +DS + R+ VL + + P +A GG+I + + + + L+ G C GC + TLK Sbjct: 105 VNADSPLEDRVNYVLYSEINPGLAAHGGEIKLVQLTEEQVAVLAFGGGCQGCAAVDLTLK 164 Query: 170 YGVANILNHFVPEVKDIRTV 189 GV L +PE+ IR V Sbjct: 165 EGVERTLMERIPELSGIRDV 184 >gi|225012595|ref|ZP_03703030.1| nitrogen-fixing NifU domain protein [Flavobacteria bacterium MS024-2A] gi|225003128|gb|EEG41103.1| nitrogen-fixing NifU domain protein [Flavobacteria bacterium MS024-2A] Length = 84 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASETLKYGVANILNH 178 +I+E L+ +RP + DGGDI DG V + + GAC GC TLK GV + Sbjct: 9 KIREALE-EIRPFLKSDGGDISLVSVEDGKHVKVQLHGACVGCSVNQMTLKSGVELTIKK 67 Query: 179 FVPEVKDIRTV 189 ++P+++ + ++ Sbjct: 68 YLPQIETVTSI 78 >gi|226495405|ref|NP_001148901.1| NFU3 [Zea mays] gi|195623070|gb|ACG33365.1| NFU3 [Zea mays] Length = 226 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD VRP + DGG++ +V L ++GAC CP++ T+K G+ L Sbjct: 78 ENVEMVLDE-VRPYLMADGGNVALHEIDGNVVRLKLQGACGSCPASVTTMKMGIERRLME 136 Query: 179 FVPEV 183 +PE+ Sbjct: 137 KIPEI 141 >gi|62734078|gb|AAX96187.1| Similar to seven transmembrane protein Mlo4 [Oryza sativa Japonica Group] Length = 980 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 E++ + VRP + DGG++ +V L ++GAC CP++ T+K G+ L +PE Sbjct: 576 EIVLDEVRPYLMADGGNVALHEIDGNVVRLKLQGACGSCPASVTTMKMGIERRLMEKIPE 635 Query: 183 V 183 + Sbjct: 636 I 636 >gi|88703284|ref|ZP_01101000.1| HesB/YadR/YfhF family protein [Congregibacter litoralis KT71] gi|88701998|gb|EAQ99101.1| HesB/YadR/YfhF family protein [Congregibacter litoralis KT71] Length = 191 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + DS + RI VL N V P++A GG++ + + D L G C GC + TLK Sbjct: 101 VSDDSPIEDRINYVLYNEVNPSLAAHGGEVSLVEVTDDAFAVLRFGGGCQGCSAVDMTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 GV L +P++K +R Sbjct: 161 DGVEKTLLDQLPQLKGVR 178 >gi|156743727|ref|YP_001433856.1| NifU domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156235055|gb|ABU59838.1| nitrogen-fixing NifU domain protein [Roseiflexus castenholzii DSM 13941] Length = 291 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +V R+ VLD RP + GGD+ R+ +V++ + G+C+GC ++ TL+ + L Sbjct: 95 IVARVSRVLDA-ARPYIRSHGGDVELVEVRENVVYVRLHGSCNGCSLSAVTLRNEIEAAL 153 Query: 177 NHFVPEVKDIRTV 189 VPE+ ++ V Sbjct: 154 RANVPEIVGVQVV 166 >gi|195361607|ref|XP_002045503.1| GM19271 [Drosophila sechellia] gi|194128907|gb|EDW50950.1| GM19271 [Drosophila sechellia] Length = 110 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/43 (55%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH-FSNAKEAEISPLA 42 MFIQT+DTPNP +LKF+PG VL +G + F N A SPL Sbjct: 67 MFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHSSPLG 109 >gi|255321743|ref|ZP_05362898.1| NifU family protein [Campylobacter showae RM3277] gi|255301223|gb|EET80485.1| NifU family protein [Campylobacter showae RM3277] Length = 89 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +D +++ +K L +V P + DGG + G ++G +++ + G C GC ++S TLKYG+ Sbjct: 5 TDEELLKPVKASL-QKVLPMLENDGGGMELLGIKNGKIYVRLTGHCHGCAASSTTLKYGI 63 Query: 173 ANIL 176 L Sbjct: 64 ERQL 67 >gi|240171478|ref|ZP_04750137.1| hypothetical protein MkanA1_19346 [Mycobacterium kansasii ATCC 12478] Length = 301 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V +R+ + L+ RVRP + GGD+ D +V L+ G+C CPS++ TL+ V + + Sbjct: 94 VHRRVSDALE-RVRPYLGSHGGDVDLLEVTDTVVRLAFTGSCKSCPSSAVTLELAVQDAI 152 Query: 177 NHFVPEVKDIRTV 189 PE+ I V Sbjct: 153 RAAAPEICAIELV 165 >gi|86607917|ref|YP_476679.1| Fe-S cluster assembly protein NifU [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556459|gb|ABD01416.1| Fe-S cluster assembly protein NifU [Synechococcus sp. JA-2-3B'a(2-13)] Length = 312 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + RI+ VL+ VRP + DGGD+ V++ ++G+C+ CPS TL+ + L Sbjct: 241 IARIQAVLEEEVRPLLLADGGDVELYDLEGDQVWVRLKGSCTTCPSQQNTLRLLIETRLQ 300 Query: 178 HFV 180 V Sbjct: 301 EQV 303 >gi|86606476|ref|YP_475239.1| Fe-S cluster assembly protein NifU [Synechococcus sp. JA-3-3Ab] gi|86555018|gb|ABC99976.1| Fe-S cluster assembly protein NifU [Synechococcus sp. JA-3-3Ab] Length = 312 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + RI+ VL+ VRP + DGGD+ V++ ++G+C+ CPS TL+ + L Sbjct: 241 IARIQAVLEEEVRPLLLADGGDVELYDLEGDQVWVRLKGSCTTCPSQQNTLRLLIETRLQ 300 Query: 178 HFV 180 V Sbjct: 301 EQV 303 >gi|21231527|ref|NP_637444.1| hypothetical protein XCC2079 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768417|ref|YP_243179.1| hypothetical protein XC_2103 [Xanthomonas campestris pv. campestris str. 8004] gi|51702176|sp|Q8P8Z9|NFUA_XANCP RecName: Full=Fe/S biogenesis protein nfuA gi|81305609|sp|Q4UUW4|NFUA_XANC8 RecName: Full=Fe/S biogenesis protein nfuA gi|21113208|gb|AAM41368.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573749|gb|AAY49159.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 199 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%) Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASE 166 G+ +++V+R++ V++N + P +A GG + + +G+V L G C GC A Sbjct: 100 GEAPAESASMVERVRWVVENEINPQLASHGGRVAVQEVSAEGVVLLRFGGGCHGCGMADV 159 Query: 167 TLKYGVANILNHFVPEVKDIR 187 TLK G+ L +P V +R Sbjct: 160 TLKQGIEKTLMGRLPGVIAVR 180 >gi|226327547|ref|ZP_03803065.1| hypothetical protein PROPEN_01418 [Proteus penneri ATCC 35198] gi|225204073|gb|EEG86427.1| hypothetical protein PROPEN_01418 [Proteus penneri ATCC 35198] Length = 192 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 +++D+ +++R++ VL +++ P +A GG + + + DG L G C+GC TLK Sbjct: 101 VDADAPLIERVEYVLQSQINPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMIDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F E+K ++ Sbjct: 161 DGIEKELLNQFPNELKGVK 179 >gi|218887746|ref|YP_002437067.1| Fe-S cluster assembly protein NifU [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758700|gb|ACL09599.1| Fe-S cluster assembly protein NifU [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 281 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 118 VQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 VQR++ +VL+ +RP + +DGGDI V++++RG C+ CPS+ TL+ V Sbjct: 205 VQRMQLVLKVLEGEIRPRLQQDGGDIELVDMDGTTVYVALRGMCTSCPSSRLTLEGFVEK 264 Query: 175 ILNHFVPE 182 L V E Sbjct: 265 TLRDHVDE 272 >gi|298708751|emb|CBJ30713.1| NifU-like protein 2, chloroplast precursor (AtCNfu2) (AtCnfU-V) [Ectocarpus siliculosus] Length = 276 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++ ++ VLD +RP + DGG++ +V L + GAC CPS++ T+K G+ L Sbjct: 123 TLENVETVLDE-MRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRL 181 Query: 177 NHFVPEVKDI 186 +PE+ ++ Sbjct: 182 VQRIPEISEV 191 >gi|330443916|ref|YP_004376902.1| NifU-like protein [Chlamydophila pecorum E58] gi|328807026|gb|AEB41199.1| NifU-like protein [Chlamydophila pecorum E58] Length = 275 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 4/75 (5%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 IE+ AV++ I E ++ P +A DGG + K + IV ++ G CSGCPS+ T Sbjct: 182 IENKIAVLRTITE---EKISPYIALDGGAVSIKTLENNIVTIAYSGNCSGCPSSIGTTLN 238 Query: 171 GVANILNHFV-PEVK 184 + +L +V PE++ Sbjct: 239 SIGQLLRTYVYPELQ 253 >gi|227112203|ref|ZP_03825859.1| putative DNA uptake protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 191 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 ++ ++ +++R++ VL +++ P +A GG + D G+ L G C+GC TLK Sbjct: 101 VDDNAPLMERVEYVLQSQINPQLAGHGGRVTLMEITDDGLAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 EGIEKELLQTFPELKGVR 178 >gi|254410535|ref|ZP_05024314.1| Fe-S cluster assembly protein NifU [Microcoleus chthonoplastes PCC 7420] gi|196182741|gb|EDX77726.1| Fe-S cluster assembly protein NifU [Microcoleus chthonoplastes PCC 7420] Length = 315 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I++VL+ +RP +A DGGD+ V + ++G+C GCPS TLK + L V Sbjct: 246 IQQVLETEIRPTLAYDGGDVELYDVEGDRVKVILKGSCDGCPSVMITLKMAIEKRLQERV 305 >gi|56459359|ref|YP_154640.1| putative DNA uptake protein [Idiomarina loihiensis L2TR] gi|81363232|sp|Q5QZC8|NFUA_IDILO RecName: Full=Fe/S biogenesis protein nfuA gi|56178369|gb|AAV81091.1| hypothetical protein IL0248 [Idiomarina loihiensis L2TR] Length = 192 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 16/159 (10%) Query: 44 RIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKL 102 R+F + PG+A+ G + + D E L P G P + + + D + Sbjct: 26 RVFVVNPGMANAECGVSYCPPDSVEPDDERL--PFNGFDAVVDSGSAPFLEDAAI-DFEE 82 Query: 103 DDMGS----------GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVF 151 +MGS + D+ +++R++ V+ + P +A GG ++ D G+ Sbjct: 83 QEMGSQLTLKAPNAKARKVADDAPLIERVEYVIQAEINPQLASHGGQVMISEITDDGVAI 142 Query: 152 LSMRGACSGCPSASETLKYGV-ANILNHFVPEVKDIRTV 189 L G C+GC TLK G+ +L F EVK +R + Sbjct: 143 LQFGGGCNGCSMIDVTLKNGIEKELLERFPEEVKGVRDI 181 >gi|323436167|ref|ZP_01051062.2| NifU-like protein [Dokdonia donghaensis MED134] gi|321496482|gb|EAQ38213.2| NifU-like protein [Dokdonia donghaensis MED134] Length = 88 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLKYG 171 S + + Q++++ L+ +RP + DGGDI G D +V + ++GAC GC TLK G Sbjct: 10 STAELTQKVEDALEE-IRPFLQSDGGDISLLGIDDDRVVRVQLQGACVGCSVNQMTLKSG 68 Query: 172 VANILNHFVPEVKDIRTV 189 V + P+++ + V Sbjct: 69 VEMTIKKHAPQIEQVINV 86 >gi|123468395|ref|XP_001317416.1| NifU-like domain containing protein [Trichomonas vaginalis G3] gi|121900149|gb|EAY05193.1| NifU-like domain containing protein [Trichomonas vaginalis G3] Length = 65 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/43 (51%), Positives = 25/43 (58%) Query: 136 DGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 DGGDIV K DGIV + + G CSGCPS TL G+ L Sbjct: 2 DGGDIVLKDITDGIVSVQLMGHCSGCPSRRNTLNAGILGCLQE 44 >gi|238014236|gb|ACR38153.1| unknown [Zea mays] Length = 226 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD VRP + DGG++ +V L ++GAC CP++ T+K G+ L Sbjct: 78 ENVEMVLDE-VRPYLMADGGNVALHEIDGNVVRLKLQGACGSCPASVTTMKMGIERRLME 136 Query: 179 FVPEV 183 +PE+ Sbjct: 137 KIPEI 141 >gi|222824470|ref|YP_002576044.1| NifU-like protein [Campylobacter lari RM2100] gi|222539691|gb|ACM64792.1| NifU-like protein [Campylobacter lari RM2100] Length = 323 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 8/86 (9%) Query: 101 KLDDMGSGDFIESDSAVVQRIKEV---LDNRVRPAVARDGGDI----VFKGYRDGI-VFL 152 KL D D D +V+++K V LD+ VRP + DGGD+ + K I +++ Sbjct: 227 KLKDQSKTDIAFDDMTMVKQLKAVEAVLDSDVRPMLHGDGGDLEVIDIQKSENKNIDIYI 286 Query: 153 SMRGACSGCPSASETLKYGVANILNH 178 GACSGC S S Y + NIL Sbjct: 287 RYLGACSGCSSGSGATLYAIENILQE 312 >gi|242067665|ref|XP_002449109.1| hypothetical protein SORBIDRAFT_05g005270 [Sorghum bicolor] gi|241934952|gb|EES08097.1| hypothetical protein SORBIDRAFT_05g005270 [Sorghum bicolor] Length = 225 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD VRP + DGG++ +V L ++GAC CP++ T+K G+ L Sbjct: 77 ENVEMVLDE-VRPYLMADGGNVALHEIDGNMVRLKLQGACGSCPASVTTMKMGIERRLME 135 Query: 179 FVPEV 183 +PE+ Sbjct: 136 KIPEI 140 >gi|254514377|ref|ZP_05126438.1| IscR-regulated protein YhgI [gamma proteobacterium NOR5-3] gi|219676620|gb|EED32985.1| IscR-regulated protein YhgI [gamma proteobacterium NOR5-3] Length = 196 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + DS + RI +L N V P++A GG++ + + D L G C GC + TLK Sbjct: 106 VSDDSPIEDRINYLLYNEVNPSLAAHGGEVSLVEVTEDAYAVLRFGGGCQGCSAVDMTLK 165 Query: 170 YGVANILNHFVPEVKDIR 187 GV L +P++K +R Sbjct: 166 DGVEKTLLDQLPQLKGVR 183 >gi|239993300|ref|ZP_04713824.1| putative DNA uptake protein [Alteromonas macleodii ATCC 27126] Length = 192 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 16/176 (9%) Query: 25 EGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIME 83 E HF + S R+F + PG +S G + D + R P G Sbjct: 7 EAQAHFVKLLSKQESGTNIRVFVVNPGTSSAECGVSYCP--PDAVEETDTRLPFNGFDAV 64 Query: 84 HFISGDPIIHNGGLGDMKLDDMGS----------GDFIESDSAVVQRIKEVLDNRVRPAV 133 P + + D D MGS + D+ +++RI ++++ + P + Sbjct: 65 VDEESAPYLEEAEI-DYVTDQMGSQLTLKAPNAKARKVSDDAPLIERINYMIESEINPQL 123 Query: 134 ARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGV-ANILNHFVPEVKDIR 187 A GG++V DG L G C+GC TLK G+ ++ F E+K +R Sbjct: 124 ASHGGNVVLTELTDDGYAILQFGGGCNGCSMVDVTLKEGIEKQMVEQFAGELKGVR 179 >gi|261344535|ref|ZP_05972179.1| IscR-regulated protein YhgI [Providencia rustigianii DSM 4541] gi|282567449|gb|EFB72984.1| IscR-regulated protein YhgI [Providencia rustigianii DSM 4541] Length = 192 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 16/172 (9%) Query: 29 HFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFIS 87 HFS E + R+F I PG + G + G + + L+ L ++ + Sbjct: 11 HFSKLLEGQEPGTQIRVFVINPGTPTAECGVSYCPPGAVEATDKELKFEKLSAYVDEISA 70 Query: 88 GDPIIHNGGLGDMKLDDMGSGDFIES----------DSAVVQRIKEVLDNRVRPAVARDG 137 P + + + D D +GS +++ D+ +++R++ VL +++ P +A G Sbjct: 71 --PFLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVSDDAPLIERVEYVLQSQINPQLAGHG 127 Query: 138 GDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGV-ANILNHFVPEVKDIR 187 G + + + DG L G C+GC TLK G+ +L F E+K ++ Sbjct: 128 GRVSLMEITEDGFAILQFGGGCNGCSMVDVTLKEGIEKELLKMFDGELKGVK 179 >gi|218667970|ref|YP_002425198.1| iron-sulfur cluster-binding protein, Rieske family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218520183|gb|ACK80769.1| iron-sulfur cluster-binding protein, Rieske family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 296 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVAN 174 ++ +RI+ LD+ VRP + GG++ R V L + G+C GCPS+S TL GV Sbjct: 92 SLQERIEAALDS-VRPGLEGHGGNVELVELRLPDTVILRLLGSCHGCPSSSLTLSDGVEK 150 Query: 175 ILNHFVPEVKDIRTV 189 + PE++ I T Sbjct: 151 AIRDACPEIRHIETA 165 >gi|198282994|ref|YP_002219315.1| Rieske (2Fe-2S) domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247515|gb|ACH83108.1| Rieske (2Fe-2S) domain protein [Acidithiobacillus ferrooxidans ATCC 53993] Length = 301 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVAN 174 ++ +RI+ LD+ VRP + GG++ R V L + G+C GCPS+S TL GV Sbjct: 97 SLQERIEAALDS-VRPGLEGHGGNVELVELRLPDTVILRLLGSCHGCPSSSLTLSDGVEK 155 Query: 175 ILNHFVPEVKDIRTV 189 + PE++ I T Sbjct: 156 AIRDACPEIRHIETA 170 >gi|33520016|ref|NP_878848.1| hypothetical protein Bfl573 [Candidatus Blochmannia floridanus] gi|51701996|sp|Q7VRN1|NFUA_BLOFL RecName: Full=Fe/S biogenesis protein nfuA gi|33504362|emb|CAD83255.1| Thioredoxin-like proteins and domains [Candidatus Blochmannia floridanus] Length = 205 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +IK +L +++ P +A GG + + K D I L G C+GC A T+K G+ L Sbjct: 123 QIKHILTHQINPQLAMHGGSVSLVKITSDSIAILKFHGGCNGCAMAFYTIKEGIEKTLKK 182 Query: 179 FVPEV 183 PE+ Sbjct: 183 LCPEL 187 >gi|152972292|ref|YP_001337438.1| putative DNA uptake protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206576923|ref|YP_002236213.1| IscR-regulated protein YhgI [Klebsiella pneumoniae 342] gi|238896881|ref|YP_002921626.1| putative DNA uptake protein [Klebsiella pneumoniae NTUH-K2044] gi|262045250|ref|ZP_06018276.1| Fe/S-biogenesis protein NfuA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288933201|ref|YP_003437260.1| IscR-regulated protein YhgI [Klebsiella variicola At-22] gi|290512005|ref|ZP_06551373.1| IscR-regulated protein YhgI [Klebsiella sp. 1_1_55] gi|330012478|ref|ZP_08307392.1| IscR-regulated protein YhgI [Klebsiella sp. MS 92-3] gi|166990527|sp|A6TF37|NFUA_KLEP7 RecName: Full=Fe/S biogenesis protein nfuA gi|254767307|sp|B5XTS2|NFUA_KLEP3 RecName: Full=Fe/S biogenesis protein nfuA gi|150957141|gb|ABR79171.1| membrane-bound protein in GNT I transport system [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206565981|gb|ACI07757.1| IscR-regulated protein YhgI [Klebsiella pneumoniae 342] gi|238549208|dbj|BAH65559.1| membrane-bound protein in GNT I transport system [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259037460|gb|EEW38705.1| Fe/S-biogenesis protein NfuA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288887930|gb|ADC56248.1| IscR-regulated protein YhgI [Klebsiella variicola At-22] gi|289775795|gb|EFD83795.1| IscR-regulated protein YhgI [Klebsiella sp. 1_1_55] gi|328533829|gb|EGF60508.1| IscR-regulated protein YhgI [Klebsiella sp. MS 92-3] Length = 191 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 3/79 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L +++ P +A GG + + + DG+ L G C+GC TLK Sbjct: 101 VSDDAPLMERVEYLLQSQINPQLAGHGGRVSLMEITDDGLAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F PE+K +R Sbjct: 161 EGIEKQLLNEF-PELKGVR 178 >gi|307545194|ref|YP_003897673.1| thioredoxin [Halomonas elongata DSM 2581] gi|307217218|emb|CBV42488.1| K07400 thioredoxin-like protein [Halomonas elongata DSM 2581] Length = 250 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + +DS + R+ VL + + P +A GG+I + + + + L+ G C GC + TLK Sbjct: 159 VNADSPLEDRVNYVLYSEINPGLAAHGGEIKLVQLTEEQVAVLAFGGGCQGCAAVDLTLK 218 Query: 170 YGVANILNHFVPEVKDIRTV 189 GV L +PE+ IR V Sbjct: 219 EGVERTLMERIPELSGIRDV 238 >gi|119357807|ref|YP_912451.1| NifU domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119355156|gb|ABL66027.1| nitrogen-fixing NifU domain protein [Chlorobium phaeobacteroides DSM 266] Length = 86 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETL 168 ++ + A+ R+ L+ VRP + DGGD G +D +V + + GAC CP ++ TL Sbjct: 7 YLPNSDALYDRVIAALET-VRPYLQVDGGDCQLVGISKDMVVDVKLLGACGSCPMSTLTL 65 Query: 169 KYGVANILNHFVPEVKDIRTV 189 + GV + +PE+ + +V Sbjct: 66 RAGVEQAIKKAIPEIARVESV 86 >gi|213961919|ref|ZP_03390184.1| conserved domain protein [Capnocytophaga sputigena Capno] gi|213955272|gb|EEB66589.1| conserved domain protein [Capnocytophaga sputigena Capno] Length = 77 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 127 NRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKD 185 +++RP + DGGDI DG IV + + G C+ C TL+ GV + +VP+++ Sbjct: 13 DKIRPYLQNDGGDITLVDIEDGKIVKVRLEGTCTNCSVNQLTLRSGVEMTIKEYVPQIEK 72 Query: 186 IRTV 189 + +V Sbjct: 73 VISV 76 >gi|212637526|ref|YP_002314051.1| putative DNA uptake protein [Shewanella piezotolerans WP3] gi|254767327|sp|B8CUY8|NFUA_SHEPW RecName: Full=Fe/S biogenesis protein nfuA gi|212559010|gb|ACJ31464.1| HesB/YadR/YfhF:Nitrogen-fixing NifU [Shewanella piezotolerans WP3] Length = 192 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +V+RI+ V+ + + P +A GG+I+ + DGI L G C+GC TLK Sbjct: 101 VSGDAPLVERIEYVIQSEINPQLASHGGNIMLVEITEDGIAVLQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L+ F E+ ++ V Sbjct: 161 DGIEKQLLDMFPGELTGVKDV 181 >gi|119776634|ref|YP_929374.1| putative DNA uptake protein [Shewanella amazonensis SB2B] gi|150383447|sp|A1SBE8|NFUA_SHEAM RecName: Full=Fe/S biogenesis protein nfuA gi|119769134|gb|ABM01705.1| YhgI protein [Shewanella amazonensis SB2B] Length = 192 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + +D+++V+RI+ V+ + P +A GG+I+ + DG+ + G C+GC TLK Sbjct: 101 VSADASLVERIEYVIQAEINPQLASHGGNILLVEVTDDGVAVIQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L+ F E+ ++R Sbjct: 161 DGIEKQLLDMFPGELTEVR 179 >gi|317485383|ref|ZP_07944262.1| NifU-like N terminal domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923342|gb|EFV44549.1| NifU-like N terminal domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 282 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +Q++ +VL + VRP +A DGGDI V +++RG CS C S + TLK V IL Sbjct: 209 MQKVMQVLQDEVRPRLAADGGDIELVDVDGHRVVVALRGLCSNCSSRTVTLKDLVEKIL 267 >gi|326487760|dbj|BAK05552.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 219 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 DS++ E++ ++VRP + DGG++ +V L ++GAC CP + T++ G+ Sbjct: 65 DSSLTAENVELVLDQVRPYLMADGGNVALHEIDGNVVRLKLQGACGACPGSVMTMRMGIQ 124 Query: 174 NILNHFVPEVKDIRTV 189 L +PE+ + + Sbjct: 125 RRLMDEIPEIAAVEAI 140 >gi|168012112|ref|XP_001758746.1| predicted protein [Physcomitrella patens subsp. patens] gi|162689883|gb|EDQ76252.1| predicted protein [Physcomitrella patens subsp. patens] Length = 153 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 E++ + VRP + DGG++ +V L ++GAC CPS++ T++ G+ L +PE Sbjct: 9 ELVLDEVRPYLISDGGNVALHEIDGLVVKLKLQGACGSCPSSTMTMRMGIERRLIERIPE 68 Query: 183 V 183 + Sbjct: 69 I 69 >gi|256827894|ref|YP_003156622.1| nitrogen-fixing NifU domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256577070|gb|ACU88206.1| nitrogen-fixing NifU domain protein [Desulfomicrobium baculatum DSM 4028] Length = 73 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +++++ LD VRP + DGG + + GIV + M GAC GCP A TLK + + Sbjct: 3 EQVEKALDT-VRPILQADGGYVELVNILPSGIVQVRMSGACKGCPMAQMTLKSSIERAVK 61 Query: 178 HFVPEVKDIRTV 189 VP +K + V Sbjct: 62 KMVPGIKAVEAV 73 >gi|154173987|ref|YP_001409127.1| NifU family protein [Campylobacter curvus 525.92] gi|112802254|gb|EAT99598.1| NifU family protein [Campylobacter curvus 525.92] Length = 89 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD +++ + L +V P + DGG + G ++G ++L + G C GC +++ TLKYG+ Sbjct: 5 SDEELLKPVTASL-QKVLPMLENDGGGMELLGIKNGKIYLRLTGHCHGCAASTTTLKYGI 63 Query: 173 ANIL 176 L Sbjct: 64 ERQL 67 >gi|295697085|ref|YP_003590323.1| nitrogen-fixing NifU domain protein [Bacillus tusciae DSM 2912] gi|295412687|gb|ADG07179.1| nitrogen-fixing NifU domain protein [Bacillus tusciae DSM 2912] Length = 277 Score = 47.4 bits (111), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 R+ VL+ VRP + GGD+ +V++ + GACSGC ++ TL+ GV + Sbjct: 89 RVAAVLEE-VRPYMRSHGGDVELVKVEADVVYVRLHGACSGCSLSALTLRDGVEEAVKAR 147 Query: 180 VPEVKDI 186 VPEV+ + Sbjct: 148 VPEVRRV 154 >gi|194334614|ref|YP_002016474.1| nitrogen-fixing NifU domain-containing protein [Prosthecochloris aestuarii DSM 271] gi|194312432|gb|ACF46827.1| nitrogen-fixing NifU domain protein [Prosthecochloris aestuarii DSM 271] Length = 86 Score = 47.4 bits (111), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSAS 165 S ++ + R+ L++ VRP + DGGD G +D +V + + GAC CP ++ Sbjct: 4 SKQYLPDTDPLYDRVINALED-VRPYLQADGGDCQLVGITKDMVVDVKLLGACGSCPMST 62 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TL+ GV + +PEV + +V Sbjct: 63 LTLRAGVEQAVKKAIPEVARVESV 86 >gi|163753376|ref|ZP_02160500.1| nifU-like domain protein [Kordia algicida OT-1] gi|161327108|gb|EDP98433.1| nifU-like domain protein [Kordia algicida OT-1] Length = 79 Score = 47.4 bits (111), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +++ LD +RP + DGGDI G D +V + + GAC GC TLK GV + Sbjct: 10 VQKALD-EIRPFLQSDGGDIKLVGIENDTLVKVQLEGACVGCSVNQMTLKSGVEMTIKKH 68 Query: 180 VPEVKDIRTV 189 VP+++ + +V Sbjct: 69 VPQIEKVISV 78 >gi|193212089|ref|YP_001998042.1| nitrogen-fixing NifU domain-containing protein [Chlorobaculum parvum NCIB 8327] gi|193085566|gb|ACF10842.1| nitrogen-fixing NifU domain protein [Chlorobaculum parvum NCIB 8327] Length = 83 Score = 47.4 bits (111), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASET 167 D++ + + R+ L+ VRP + DGGD G +D +V + + GAC CP ++ T Sbjct: 3 DYLPNSDPLYDRVISALET-VRPYLQVDGGDCQLIGITKDMVVDVKLLGACGSCPMSTLT 61 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 L+ GV + +PE+ + V Sbjct: 62 LRAGVEQAIKKAIPEIARVEQV 83 >gi|119486794|ref|ZP_01620769.1| Fe-S cluster assembly protein NifU [Lyngbya sp. PCC 8106] gi|119456087|gb|EAW37220.1| Fe-S cluster assembly protein NifU [Lyngbya sp. PCC 8106] Length = 300 Score = 47.4 bits (111), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I++VL +++P +A+DGG++ V + ++GACS C S++ETLK + L V Sbjct: 232 IQQVLTEQIKPVLAKDGGNVELFDVEGDRVKVILQGACSSCASSTETLKIAIEGTLRATV 291 Query: 181 P 181 Sbjct: 292 S 292 >gi|294138942|ref|YP_003554920.1| yhgI protein [Shewanella violacea DSS12] gi|293325411|dbj|BAJ00142.1| yhgI protein [Shewanella violacea DSS12] Length = 192 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + SD+++ +RI+ V+ + + P +A GG+I+ + +G+ L G C+GC TLK Sbjct: 101 VNSDASLNERIEYVIQSEINPQLASHGGNIMLMEVSEEGVAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L+ F E+ +R + Sbjct: 161 NGIEKQLLDMFPGELTGVRDI 181 >gi|148244538|ref|YP_001219232.1| hypothetical protein COSY_0386 [Candidatus Vesicomyosocius okutanii HA] gi|254767332|sp|A5CX22|NFUA_VESOH RecName: Full=Fe/S biogenesis protein nfuA gi|146326365|dbj|BAF61508.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii HA] Length = 192 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 106 GSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSA 164 G+ + D+ + ++IK V+ + P +A GG + G I V L+ G C GC S Sbjct: 97 AKGEEPKEDAPLEEKIKYVIAADITPGLASHGGFVELVGITKQIDVILNFGGGCQGCSSV 156 Query: 165 SETLKYGVANILNHFVPEVKDIRTV 189 TL+ GV L PE+K +R V Sbjct: 157 KSTLEQGVEAQLKARFPEIKSVRDV 181 >gi|261823348|ref|YP_003261454.1| DNA uptake protein [Pectobacterium wasabiae WPP163] gi|261607361|gb|ACX89847.1| IscR-regulated protein YhgI [Pectobacterium wasabiae WPP163] Length = 191 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 ++ + +++R++ VL +++ P +A GG + D G+ L G C+GC TLK Sbjct: 101 VDDSAPLMERVEYVLQSQINPQLAGHGGRVTLMEITDDGLAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 EGIEKELLQTFPELKGVR 178 >gi|221135019|ref|ZP_03561322.1| putative DNA uptake protein [Glaciecola sp. HTCC2999] Length = 192 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 16/157 (10%) Query: 44 RIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKL 102 R+F + PG ++ G + T D + +R P G P + + D Sbjct: 26 RVFVVNPGTSTAECGVSYCT--PDAVEATDIRLPFNGFDAVVDQESAPFLEEAEI-DFVT 82 Query: 103 DDMGS----------GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVF 151 D MGS I D+ ++ R++ ++ + P +A G + G D GI Sbjct: 83 DQMGSQLTLKAPNAKARKIADDAPLIDRVEYLIQTEINPQLANHNGQVTLTGITDDGIAI 142 Query: 152 LSMRGACSGCPSASETLKYGV-ANILNHFVPEVKDIR 187 L G C+GC TLK G+ +L F E+ +R Sbjct: 143 LQFGGGCNGCSMVDVTLKDGIEKQMLEQFAGELTGVR 179 >gi|113476874|ref|YP_722935.1| nitrogen-fixing NifU-like protein [Trichodesmium erythraeum IMS101] gi|110167922|gb|ABG52462.1| nitrogen-fixing NifU-like [Trichodesmium erythraeum IMS101] Length = 173 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNH 178 RI++ LD VRP + GD+ G + V + + G CS CP+++ T+K GV + Sbjct: 98 RIQQALD-EVRPGLQSHNGDVELVGIKLPDTVEVKLVGNCSNCPASTLTMKDGVEQAIKT 156 Query: 179 FVPEVKDIRTV 189 PE+K++ +V Sbjct: 157 HCPEIKNVVSV 167 >gi|308808272|ref|XP_003081446.1| NifU-like domain-containing proteins (ISS) [Ostreococcus tauri] gi|116059909|emb|CAL55968.1| NifU-like domain-containing proteins (ISS) [Ostreococcus tauri] Length = 203 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 3/67 (4%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASETLKYGVANILNHF 179 I++VLD VRP + DGGD+ DG+ V L ++GAC CPS++ T++ G+ L Sbjct: 57 IEKVLDE-VRPYLIADGGDVELVEI-DGLSVKLKLKGACGSCPSSTVTMRMGIEKRLLEK 114 Query: 180 VPEVKDI 186 +P++ ++ Sbjct: 115 IPDIMEV 121 >gi|322830955|ref|YP_004210982.1| IscR-regulated protein YhgI [Rahnella sp. Y9602] gi|321166156|gb|ADW71855.1| IscR-regulated protein YhgI [Rahnella sp. Y9602] Length = 191 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ L +++ P +A GG + + + DGI L G C+GC TLK Sbjct: 101 VSDDAPLMERVEYQLQSQINPQLASHGGRVSLMEITDDGIAILQFGGGCNGCSMIDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 DGIEKELLQNFPELKGVR 178 >gi|224129660|ref|XP_002328771.1| predicted protein [Populus trichocarpa] gi|222839069|gb|EEE77420.1| predicted protein [Populus trichocarpa] Length = 234 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 ++ VLD VRP + DGG++ +V L ++GACS C ++ T+K G+ L + Sbjct: 89 VESVLDE-VRPYLISDGGNVALHEIDGNVVRLKLQGACSSCSASVTTMKMGIERRLMEKI 147 Query: 181 PEVKDIRTV 189 PE+ + + Sbjct: 148 PEIVAVEAI 156 >gi|126172396|ref|YP_001048545.1| putative DNA uptake protein [Shewanella baltica OS155] gi|153002690|ref|YP_001368371.1| putative DNA uptake protein [Shewanella baltica OS185] gi|160877426|ref|YP_001556742.1| putative DNA uptake protein [Shewanella baltica OS195] gi|217975268|ref|YP_002360019.1| putative DNA uptake protein [Shewanella baltica OS223] gi|304412256|ref|ZP_07393864.1| IscR-regulated protein YhgI [Shewanella baltica OS183] gi|307306040|ref|ZP_07585785.1| IscR-regulated protein YhgI [Shewanella baltica BA175] gi|166990529|sp|A3CYW3|NFUA_SHEB5 RecName: Full=Fe/S biogenesis protein nfuA gi|166990530|sp|A6WU19|NFUA_SHEB8 RecName: Full=Fe/S biogenesis protein nfuA gi|189041728|sp|A9KUY3|NFUA_SHEB9 RecName: Full=Fe/S biogenesis protein nfuA gi|254767326|sp|B8ECN4|NFUA_SHEB2 RecName: Full=Fe/S biogenesis protein nfuA gi|125995601|gb|ABN59676.1| HesB/YadR/YfhF-family protein [Shewanella baltica OS155] gi|151367308|gb|ABS10308.1| HesB/YadR/YfhF-family protein [Shewanella baltica OS185] gi|160862948|gb|ABX51482.1| IscR-regulated protein YhgI [Shewanella baltica OS195] gi|217500403|gb|ACK48596.1| IscR-regulated protein YhgI [Shewanella baltica OS223] gi|304349291|gb|EFM13701.1| IscR-regulated protein YhgI [Shewanella baltica OS183] gi|306910913|gb|EFN41340.1| IscR-regulated protein YhgI [Shewanella baltica BA175] gi|315269629|gb|ADT96482.1| IscR-regulated protein YhgI [Shewanella baltica OS678] Length = 192 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +V+RI+ V+ + + P +A GG+I+ + ++G+ L G C+GC TLK Sbjct: 101 VSGDAPLVERIEYVIQSEINPQLAGHGGNIMLVEITKEGVAVLQFGGGCNGCSQVDITLK 160 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L+ F E+ +R V Sbjct: 161 DGIEKQLLDMFPGELTGVRDV 181 >gi|149911004|ref|ZP_01899633.1| Thioredoxin-like protein [Moritella sp. PE36] gi|149805907|gb|EDM65893.1| Thioredoxin-like protein [Moritella sp. PE36] Length = 192 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ + +R+ V+ V P +A GG++V D GI L G C+GC TLK Sbjct: 101 VADDAPLTERVDYVIQTEVNPQLAGHGGNVVLTEITDDGIAILQFGGGCNGCSQVDFTLK 160 Query: 170 YGVANILNHFVPE 182 G+ L PE Sbjct: 161 EGIEKQLLELFPE 173 >gi|303327402|ref|ZP_07357843.1| Fe-S cluster assembly protein NifU [Desulfovibrio sp. 3_1_syn3] gi|302862342|gb|EFL85275.1| Fe-S cluster assembly protein NifU [Desulfovibrio sp. 3_1_syn3] Length = 278 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 4/70 (5%) Query: 118 VQRIKEVL---DNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 VQR+++VL D +RP +A DGGDI V +S+RG CS C S+ T++ V Sbjct: 204 VQRMQQVLKTIDEEIRPQLAADGGDIELVDVDGKRVTVSLRGRCSHCRSSEVTIRNLVER 263 Query: 175 IL-NHFVPEV 183 +L H P++ Sbjct: 264 LLREHVEPDI 273 >gi|255994079|ref|ZP_05427214.1| NifU-related protein [Eubacterium saphenum ATCC 49989] gi|255993747|gb|EEU03836.1| NifU-related protein [Eubacterium saphenum ATCC 49989] Length = 100 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +D +VQ +KE +V P +A G + +G+ + + GAC+ CPSA T++ V Sbjct: 8 TDKKLVQTLKE----KVDPLLAEHLGGSELVDFENGVARVRLTGACATCPSAELTMESVV 63 Query: 173 ANILNHFVPEVKDI 186 I+ PEVKD+ Sbjct: 64 KEIVLENCPEVKDV 77 >gi|217979852|ref|YP_002363999.1| Rieske (2Fe-2S) domain protein [Methylocella silvestris BL2] gi|217505228|gb|ACK52637.1| Rieske (2Fe-2S) domain protein [Methylocella silvestris BL2] Length = 290 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +RI+ L+ VRP +A GGD+ R + + G+C GCP++S T GV + Sbjct: 96 ERIESALEG-VRPMLAAHGGDVELVSVRPPAIEVRFVGSCDGCPASSMTFHAGVKKAVAE 154 Query: 179 FVPEVKDIRTV 189 PE+ DI V Sbjct: 155 ACPEITDILQV 165 >gi|194430959|ref|ZP_03063252.1| protein GntY [Shigella dysenteriae 1012] gi|194420414|gb|EDX36490.1| protein GntY [Shigella dysenteriae 1012] gi|332085774|gb|EGI90938.1| nifU-like domain protein [Shigella dysenteriae 155-74] Length = 191 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 3/79 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L +++ P +A GG + + + DG L G C+GC TLK Sbjct: 101 VADDAPLMERVEYMLQSQINPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ ++LN F PE+K +R Sbjct: 161 EGIEKHLLNEF-PELKGVR 178 >gi|309810977|ref|ZP_07704775.1| NifU-like protein [Dermacoccus sp. Ellin185] gi|308434941|gb|EFP58775.1| NifU-like protein [Dermacoccus sp. Ellin185] Length = 219 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 4/85 (4%) Query: 104 DMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPS 163 D G+ D D+ + ++ + V+ + GGDI G G+V +S+ GAC GCP+ Sbjct: 113 DEGAAD----DTEIAEQARVVVADVAEQVAHSHGGDITLLGVERGVVTVSLTGACDGCPA 168 Query: 164 ASETLKYGVANILNHFVPEVKDIRT 188 A+ TL + + L V V+++R Sbjct: 169 AAMTLHRRIEDELRARVGGVREVRA 193 >gi|145351003|ref|XP_001419878.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580111|gb|ABO98171.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 213 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%) Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASE 166 G ++ I+ VLD VRP + DGGD+ DG+ V L ++GAC CPS++ Sbjct: 54 GSLTDTLELTADNIESVLDE-VRPYLIADGGDVELVEI-DGLSVKLKLKGACGSCPSSTV 111 Query: 167 TLKYGVANILNHFVPEVKDI 186 T++ G+ L +P++ ++ Sbjct: 112 TMRMGIEKRLLEKIPDIMEV 131 >gi|298706477|emb|CBJ29464.1| iron-sulfur cluster assembly protein, similar to nifU [Ectocarpus siliculosus] Length = 494 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVAN 174 ++ + +VLD VRP + DGG++ G +V L+++GAC CPS++ T+K G+ Sbjct: 344 TLENVDKVLDE-VRPYLIADGGNVRVMGVDIDRRVVKLALQGACGSCPSSTTTMKMGIER 402 Query: 175 ILNH 178 +LN Sbjct: 403 VLNE 406 >gi|226944949|ref|YP_002800022.1| NfuA protein [Azotobacter vinelandii DJ] gi|259511740|sp|C1DLW0|NFUA_AZOVD RecName: Full=Fe/S biogenesis protein nfuA gi|226719876|gb|ACO79047.1| NfuA protein [Azotobacter vinelandii DJ] Length = 194 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETL 168 I+ DS + +RI L + P +A GG + + +GI L G C GC TL Sbjct: 103 MIDEDSPLGERINYYLQTEINPGLASHGGQVSLVDIVEEGIAVLRFGGGCQGCGMVDMTL 162 Query: 169 KYGVANILNHFVPEVKDIR 187 K GV L +P++K +R Sbjct: 163 KDGVEKTLLERIPDLKGVR 181 >gi|114049364|ref|YP_739914.1| putative DNA uptake protein [Shewanella sp. MR-7] gi|119370616|sp|Q0HPU8|NFUA_SHESR RecName: Full=Fe/S biogenesis protein nfuA gi|113890806|gb|ABI44857.1| HesB/YadR/YfhF-family protein [Shewanella sp. MR-7] Length = 192 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + SD+ + +R++ V+ + + P +A GG+I+ + ++G+ L G C+GC TLK Sbjct: 101 VSSDAPLAERVEYVIQSEINPQLASHGGNIMLVEITQEGVAVLQFGGGCNGCSQVDITLK 160 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L+ F E+ +R V Sbjct: 161 DGIEKQLLDMFPGELTGVRDV 181 >gi|15803918|ref|NP_289954.1| putative DNA uptake protein [Escherichia coli O157:H7 EDL933] gi|15833510|ref|NP_312283.1| DNA uptake protein [Escherichia coli O157:H7 str. Sakai] gi|16131290|ref|NP_417873.1| Fe/S biogenesis protein; possible scaffold/chaperone for damaged Fe/S proteins [Escherichia coli str. K-12 substr. MG1655] gi|24114681|ref|NP_709191.1| putative DNA uptake protein [Shigella flexneri 2a str. 301] gi|26250015|ref|NP_756055.1| putative DNA uptake protein [Escherichia coli CFT073] gi|30065301|ref|NP_839472.1| putative DNA uptake protein [Shigella flexneri 2a str. 2457T] gi|74313917|ref|YP_312336.1| putative DNA uptake protein [Shigella sonnei Ss046] gi|82545771|ref|YP_409718.1| DNA uptake protein [Shigella boydii Sb227] gi|82778770|ref|YP_405119.1| putative DNA uptake protein [Shigella dysenteriae Sd197] gi|89110596|ref|AP_004376.1| predicted gluconate transport associated protein [Escherichia coli str. K-12 substr. W3110] gi|91212889|ref|YP_542875.1| putative DNA uptake protein [Escherichia coli UTI89] gi|110643647|ref|YP_671377.1| putative DNA uptake protein [Escherichia coli 536] gi|110807249|ref|YP_690769.1| putative DNA uptake protein [Shigella flexneri 5 str. 8401] gi|117625679|ref|YP_859002.1| putative DNA uptake protein [Escherichia coli APEC O1] gi|157155730|ref|YP_001464872.1| putative DNA uptake protein [Escherichia coli E24377A] gi|157162891|ref|YP_001460209.1| putative DNA uptake protein [Escherichia coli HS] gi|168747108|ref|ZP_02772130.1| protein GntY [Escherichia coli O157:H7 str. EC4113] gi|168753167|ref|ZP_02778174.1| protein GntY [Escherichia coli O157:H7 str. EC4401] gi|168759439|ref|ZP_02784446.1| protein GntY [Escherichia coli O157:H7 str. EC4501] gi|168765762|ref|ZP_02790769.1| protein GntY [Escherichia coli O157:H7 str. EC4486] gi|168772693|ref|ZP_02797700.1| protein GntY [Escherichia coli O157:H7 str. EC4196] gi|168779498|ref|ZP_02804505.1| protein GntY [Escherichia coli O157:H7 str. EC4076] gi|168785219|ref|ZP_02810226.1| protein GntY [Escherichia coli O157:H7 str. EC869] gi|168797185|ref|ZP_02822192.1| protein GntY [Escherichia coli O157:H7 str. EC508] gi|170018350|ref|YP_001723304.1| putative DNA uptake protein [Escherichia coli ATCC 8739] gi|170082930|ref|YP_001732250.1| gluconate transport associated protein [Escherichia coli str. K-12 substr. DH10B] gi|170681204|ref|YP_001745662.1| putative DNA uptake protein [Escherichia coli SMS-3-5] gi|170766983|ref|ZP_02901436.1| protein GntY [Escherichia albertii TW07627] gi|187731025|ref|YP_001882093.1| putative DNA uptake protein [Shigella boydii CDC 3083-94] gi|188492005|ref|ZP_02999275.1| protein GntY [Escherichia coli 53638] gi|191167295|ref|ZP_03029112.1| protein GntY [Escherichia coli B7A] gi|191167903|ref|ZP_03029707.1| protein GntY [Escherichia coli B7A] gi|191171521|ref|ZP_03033069.1| protein GntY [Escherichia coli F11] gi|193061845|ref|ZP_03042942.1| protein GntY [Escherichia coli E22] gi|193068805|ref|ZP_03049765.1| protein GntY [Escherichia coli E110019] gi|194426967|ref|ZP_03059519.1| protein GntY [Escherichia coli B171] gi|194435891|ref|ZP_03067994.1| protein GntY [Escherichia coli 101-1] gi|195934903|ref|ZP_03080285.1| putative DNA uptake protein [Escherichia coli O157:H7 str. EC4024] gi|208809095|ref|ZP_03251432.1| protein GntY [Escherichia coli O157:H7 str. EC4206] gi|208811856|ref|ZP_03253185.1| protein GntY [Escherichia coli O157:H7 str. EC4045] gi|208821055|ref|ZP_03261375.1| protein GntY [Escherichia coli O157:H7 str. EC4042] gi|209396437|ref|YP_002272850.1| protein GntY [Escherichia coli O157:H7 str. EC4115] gi|209920872|ref|YP_002294956.1| putative DNA uptake protein [Escherichia coli SE11] gi|215488695|ref|YP_002331126.1| putative DNA uptake protein [Escherichia coli O127:H6 str. E2348/69] gi|217325780|ref|ZP_03441864.1| protein GntY [Escherichia coli O157:H7 str. TW14588] gi|218550672|ref|YP_002384463.1| DNA uptake protein [Escherichia fergusonii ATCC 35469] gi|218555963|ref|YP_002388876.1| putative DNA uptake protein [Escherichia coli IAI1] gi|218560472|ref|YP_002393385.1| DNA uptake protein [Escherichia coli S88] gi|218691690|ref|YP_002399902.1| putative DNA uptake protein [Escherichia coli ED1a] gi|218697097|ref|YP_002404764.1| putative DNA uptake protein [Escherichia coli 55989] gi|218707005|ref|YP_002414524.1| putative DNA uptake protein [Escherichia coli UMN026] gi|227883548|ref|ZP_04001353.1| HesB family protein [Escherichia coli 83972] gi|237703145|ref|ZP_04533626.1| Fe/S biogenesis protein nfuA [Escherichia sp. 3_2_53FAA] gi|238902505|ref|YP_002928301.1| putative gluconate transport associated protein [Escherichia coli BW2952] gi|253771757|ref|YP_003034588.1| DNA uptake protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038582|ref|ZP_04872638.1| GntY [Escherichia sp. 1_1_43] gi|254163342|ref|YP_003046450.1| putative DNA uptake protein [Escherichia coli B str. REL606] gi|254795329|ref|YP_003080166.1| putative DNA uptake protein [Escherichia coli O157:H7 str. TW14359] gi|256020759|ref|ZP_05434624.1| putative DNA uptake protein [Shigella sp. D9] gi|256025858|ref|ZP_05439723.1| putative DNA uptake protein [Escherichia sp. 4_1_40B] gi|260846198|ref|YP_003223976.1| putative gluconate transport associated protein [Escherichia coli O103:H2 str. 12009] gi|260857521|ref|YP_003231412.1| putative gluconate transport associated protein [Escherichia coli O26:H11 str. 11368] gi|260870140|ref|YP_003236542.1| putative gluconate transport associated protein [Escherichia coli O111:H- str. 11128] gi|261224695|ref|ZP_05938976.1| predicted gluconate transport associated protein [Escherichia coli O157:H7 str. FRIK2000] gi|261254410|ref|ZP_05946943.1| putative gluconate transport associated protein [Escherichia coli O157:H7 str. FRIK966] gi|291284750|ref|YP_003501568.1| Fe/S biogenesis protein nfuA [Escherichia coli O55:H7 str. CB9615] gi|293406992|ref|ZP_06650916.1| DNA uptake protein [Escherichia coli FVEC1412] gi|293412832|ref|ZP_06655500.1| IscR-regulated protein YhgI [Escherichia coli B354] gi|293416816|ref|ZP_06659453.1| IscR-regulated protein YhgI [Escherichia coli B185] gi|293453720|ref|ZP_06664139.1| IscR-regulated protein YhgI [Escherichia coli B088] gi|298382734|ref|ZP_06992329.1| DNA uptake protein [Escherichia coli FVEC1302] gi|300815387|ref|ZP_07095612.1| IscR-regulated protein YhgI [Escherichia coli MS 107-1] gi|300822787|ref|ZP_07102924.1| IscR-regulated protein YhgI [Escherichia coli MS 119-7] gi|300898897|ref|ZP_07117198.1| IscR-regulated protein YhgI [Escherichia coli MS 198-1] gi|300907442|ref|ZP_07125089.1| IscR-regulated protein YhgI [Escherichia coli MS 84-1] gi|300919299|ref|ZP_07135813.1| IscR-regulated protein YhgI [Escherichia coli MS 115-1] gi|300926895|ref|ZP_07142661.1| IscR-regulated protein YhgI [Escherichia coli MS 182-1] gi|300931053|ref|ZP_07146409.1| IscR-regulated protein YhgI [Escherichia coli MS 187-1] gi|300937287|ref|ZP_07152130.1| IscR-regulated protein YhgI [Escherichia coli MS 21-1] gi|300946843|ref|ZP_07161084.1| IscR-regulated protein YhgI [Escherichia coli MS 116-1] gi|300956744|ref|ZP_07169013.1| IscR-regulated protein YhgI [Escherichia coli MS 175-1] gi|300985358|ref|ZP_07177414.1| IscR-regulated protein YhgI [Escherichia coli MS 45-1] gi|300987300|ref|ZP_07178108.1| IscR-regulated protein YhgI [Escherichia coli MS 200-1] gi|301019565|ref|ZP_07183727.1| IscR-regulated protein YhgI [Escherichia coli MS 69-1] gi|301023028|ref|ZP_07186838.1| IscR-regulated protein YhgI [Escherichia coli MS 196-1] gi|301050374|ref|ZP_07197263.1| IscR-regulated protein YhgI [Escherichia coli MS 185-1] gi|301302293|ref|ZP_07208425.1| IscR-regulated protein YhgI [Escherichia coli MS 124-1] gi|301329725|ref|ZP_07222468.1| IscR-regulated protein YhgI [Escherichia coli MS 78-1] gi|301645854|ref|ZP_07245768.1| IscR-regulated protein YhgI [Escherichia coli MS 146-1] gi|306816248|ref|ZP_07450386.1| putative DNA uptake protein [Escherichia coli NC101] gi|307140100|ref|ZP_07499456.1| putative DNA uptake protein [Escherichia coli H736] gi|307311921|ref|ZP_07591559.1| IscR-regulated protein YhgI [Escherichia coli W] gi|309785841|ref|ZP_07680472.1| nifU-like domain protein [Shigella dysenteriae 1617] gi|309794685|ref|ZP_07689107.1| IscR-regulated protein YhgI [Escherichia coli MS 145-7] gi|312968274|ref|ZP_07782484.1| nifU-like domain protein [Escherichia coli 2362-75] gi|312972322|ref|ZP_07786496.1| nifU-like domain protein [Escherichia coli 1827-70] gi|331644114|ref|ZP_08345243.1| IscR-regulated protein YhgI [Escherichia coli H736] gi|331654992|ref|ZP_08355991.1| IscR-regulated protein YhgI [Escherichia coli M718] gi|331659703|ref|ZP_08360641.1| IscR-regulated protein YhgI [Escherichia coli TA206] gi|331665020|ref|ZP_08365921.1| IscR-regulated protein YhgI [Escherichia coli TA143] gi|331670236|ref|ZP_08371075.1| IscR-regulated protein YhgI [Escherichia coli TA271] gi|331674902|ref|ZP_08375659.1| IscR-regulated protein YhgI [Escherichia coli TA280] gi|331679478|ref|ZP_08380148.1| IscR-regulated protein YhgI [Escherichia coli H591] gi|331685056|ref|ZP_08385642.1| IscR-regulated protein YhgI [Escherichia coli H299] gi|332281961|ref|ZP_08394374.1| Fe/S biogenesis protein nfuA [Shigella sp. D9] gi|51702267|sp|P63020|NFUA_ECOLI RecName: Full=Fe/S biogenesis protein nfuA gi|51702268|sp|P63021|NFUA_ECOL6 RecName: Full=Fe/S biogenesis protein nfuA gi|51702269|sp|P63022|NFUA_ECO57 RecName: Full=Fe/S biogenesis protein nfuA gi|51702270|sp|P63023|NFUA_SHIFL RecName: Full=Fe/S biogenesis protein nfuA gi|119370608|sp|Q0TC53|NFUA_ECOL5 RecName: Full=Fe/S biogenesis protein nfuA gi|119370609|sp|Q1R5M0|NFUA_ECOUT RecName: Full=Fe/S biogenesis protein nfuA gi|119370617|sp|Q31VL8|NFUA_SHIBS RecName: Full=Fe/S biogenesis protein nfuA gi|119370618|sp|Q32AM7|NFUA_SHIDS RecName: Full=Fe/S biogenesis protein nfuA gi|119370619|sp|Q3YWL1|NFUA_SHISS RecName: Full=Fe/S biogenesis protein nfuA gi|122957141|sp|Q0SZQ1|NFUA_SHIF8 RecName: Full=Fe/S biogenesis protein nfuA gi|150383445|sp|A1AGT8|NFUA_ECOK1 RecName: Full=Fe/S biogenesis protein nfuA gi|166990521|sp|A7ZSU3|NFUA_ECO24 RecName: Full=Fe/S biogenesis protein nfuA gi|166990522|sp|A8A5M2|NFUA_ECOHS RecName: Full=Fe/S biogenesis protein nfuA gi|189041724|sp|B1IP51|NFUA_ECOLC RecName: Full=Fe/S biogenesis protein nfuA gi|254767294|sp|B7UKB9|NFUA_ECO27 RecName: Full=Fe/S biogenesis protein nfuA gi|254767295|sp|B7MDP0|NFUA_ECO45 RecName: Full=Fe/S biogenesis protein nfuA gi|254767296|sp|B7L4U4|NFUA_ECO55 RecName: Full=Fe/S biogenesis protein nfuA gi|254767297|sp|B5YTW5|NFUA_ECO5E RecName: Full=Fe/S biogenesis protein nfuA gi|254767299|sp|B7N147|NFUA_ECO81 RecName: Full=Fe/S biogenesis protein nfuA gi|254767300|sp|B7M1X0|NFUA_ECO8A RecName: Full=Fe/S biogenesis protein nfuA gi|254767301|sp|B1X760|NFUA_ECODH RecName: Full=Fe/S biogenesis protein nfuA gi|254767302|sp|B7NE19|NFUA_ECOLU RecName: Full=Fe/S biogenesis protein nfuA gi|254767303|sp|B6I2X8|NFUA_ECOSE RecName: Full=Fe/S biogenesis protein nfuA gi|254767304|sp|B1LHL4|NFUA_ECOSM RecName: Full=Fe/S biogenesis protein nfuA gi|254767306|sp|B7LSB7|NFUA_ESCF3 RecName: Full=Fe/S biogenesis protein nfuA gi|254767329|sp|B2U3M4|NFUA_SHIB3 RecName: Full=Fe/S biogenesis protein nfuA gi|259511741|sp|C4ZVW3|NFUA_ECOBW RecName: Full=Fe/S biogenesis protein nfuA gi|12518044|gb|AAG58515.1|AE005563_9 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|26110444|gb|AAN82629.1|AE016768_47 Protein yhgI [Escherichia coli CFT073] gi|606349|gb|AAA58212.1| ORF_o191 [Escherichia coli str. K-12 substr. MG1655] gi|1789819|gb|AAC76439.1| Fe/S biogenesis protein; possible scaffold/chaperone for damaged Fe/S proteins [Escherichia coli str. K-12 substr. MG1655] gi|13363730|dbj|BAB37679.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|24053889|gb|AAN44898.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30043563|gb|AAP19283.1| hypothetical protein S4328 [Shigella flexneri 2a str. 2457T] gi|73857394|gb|AAZ90101.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81242918|gb|ABB63628.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|81247182|gb|ABB67890.1| conserved hypothetical protein [Shigella boydii Sb227] gi|85676627|dbj|BAE77877.1| predicted gluconate transport associated protein [Escherichia coli str. K12 substr. W3110] gi|91074463|gb|ABE09344.1| hypothetical protein UTI89_C3915 [Escherichia coli UTI89] gi|110345239|gb|ABG71476.1| hypothetical protein YhgI (HesB-like domain) [Escherichia coli 536] gi|110616797|gb|ABF05464.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|115514803|gb|ABJ02878.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|157068571|gb|ABV07826.1| protein GntY [Escherichia coli HS] gi|157077760|gb|ABV17468.1| protein GntY [Escherichia coli E24377A] gi|169753278|gb|ACA75977.1| IscR-regulated protein YhgI [Escherichia coli ATCC 8739] gi|169890765|gb|ACB04472.1| predicted gluconate transport associated protein [Escherichia coli str. K-12 substr. DH10B] gi|170124421|gb|EDS93352.1| protein GntY [Escherichia albertii TW07627] gi|170518922|gb|ACB17100.1| protein GntY [Escherichia coli SMS-3-5] gi|187428017|gb|ACD07291.1| protein GntY [Shigella boydii CDC 3083-94] gi|187771744|gb|EDU35588.1| protein GntY [Escherichia coli O157:H7 str. EC4196] gi|188018489|gb|EDU56611.1| protein GntY [Escherichia coli O157:H7 str. EC4113] gi|188487204|gb|EDU62307.1| protein GntY [Escherichia coli 53638] gi|189002308|gb|EDU71294.1| protein GntY [Escherichia coli O157:H7 str. EC4076] gi|189359050|gb|EDU77469.1| protein GntY [Escherichia coli O157:H7 str. EC4401] gi|189364704|gb|EDU83123.1| protein GntY [Escherichia coli O157:H7 str. EC4486] gi|189369561|gb|EDU87977.1| protein GntY [Escherichia coli O157:H7 str. EC4501] gi|189374586|gb|EDU93002.1| protein GntY [Escherichia coli O157:H7 str. EC869] gi|189380102|gb|EDU98518.1| protein GntY [Escherichia coli O157:H7 str. EC508] gi|190902076|gb|EDV61821.1| protein GntY [Escherichia coli B7A] gi|190902647|gb|EDV62379.1| protein GntY [Escherichia coli B7A] gi|190908148|gb|EDV67739.1| protein GntY [Escherichia coli F11] gi|192932635|gb|EDV85232.1| protein GntY [Escherichia coli E22] gi|192957881|gb|EDV88324.1| protein GntY [Escherichia coli E110019] gi|194414928|gb|EDX31198.1| protein GntY [Escherichia coli B171] gi|194425434|gb|EDX41418.1| protein GntY [Escherichia coli 101-1] gi|208728896|gb|EDZ78497.1| protein GntY [Escherichia coli O157:H7 str. EC4206] gi|208733133|gb|EDZ81820.1| protein GntY [Escherichia coli O157:H7 str. EC4045] gi|208741178|gb|EDZ88860.1| protein GntY [Escherichia coli O157:H7 str. EC4042] gi|209157837|gb|ACI35270.1| protein GntY [Escherichia coli O157:H7 str. EC4115] gi|209756428|gb|ACI76526.1| hypothetical protein ECs4256 [Escherichia coli] gi|209756430|gb|ACI76527.1| hypothetical protein ECs4256 [Escherichia coli] gi|209756432|gb|ACI76528.1| hypothetical protein ECs4256 [Escherichia coli] gi|209756434|gb|ACI76529.1| hypothetical protein ECs4256 [Escherichia coli] gi|209756436|gb|ACI76530.1| hypothetical protein ECs4256 [Escherichia coli] gi|209914131|dbj|BAG79205.1| conserved hypothetical protein [Escherichia coli SE11] gi|215266767|emb|CAS11207.1| predicted gluconate transport associated protein [Escherichia coli O127:H6 str. E2348/69] gi|217322001|gb|EEC30425.1| protein GntY [Escherichia coli O157:H7 str. TW14588] gi|218353829|emb|CAV00186.1| putative gluconate transport associated protein [Escherichia coli 55989] gi|218358213|emb|CAQ90860.1| putative gluconate transport associated protein [Escherichia fergusonii ATCC 35469] gi|218362731|emb|CAR00357.1| putative gluconate transport associated protein [Escherichia coli IAI1] gi|218367241|emb|CAR05015.1| putative gluconate transport associated protein [Escherichia coli S88] gi|218429254|emb|CAR10065.1| putative gluconate transport associated protein [Escherichia coli ED1a] gi|218434102|emb|CAR15019.1| putative gluconate transport associated protein [Escherichia coli UMN026] gi|226839088|gb|EEH71111.1| GntY [Escherichia sp. 1_1_43] gi|226902409|gb|EEH88668.1| Fe/S biogenesis protein nfuA [Escherichia sp. 3_2_53FAA] gi|227839427|gb|EEJ49893.1| HesB family protein [Escherichia coli 83972] gi|238862428|gb|ACR64426.1| predicted gluconate transport associated protein [Escherichia coli BW2952] gi|242378937|emb|CAQ33735.1| iron-sulfur cluster scaffold protein [Escherichia coli BL21(DE3)] gi|253322801|gb|ACT27403.1| IscR-regulated protein YhgI [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975243|gb|ACT40914.1| predicted gluconate transport associated protein [Escherichia coli B str. REL606] gi|253979399|gb|ACT45069.1| predicted gluconate transport associated protein [Escherichia coli BL21(DE3)] gi|254594729|gb|ACT74090.1| predicted gluconate transport associated protein [Escherichia coli O157:H7 str. TW14359] gi|257756170|dbj|BAI27672.1| predicted gluconate transport associated protein [Escherichia coli O26:H11 str. 11368] gi|257761345|dbj|BAI32842.1| predicted gluconate transport associated protein [Escherichia coli O103:H2 str. 12009] gi|257766496|dbj|BAI37991.1| predicted gluconate transport associated protein [Escherichia coli O111:H- str. 11128] gi|260447567|gb|ACX37989.1| IscR-regulated protein YhgI [Escherichia coli DH1] gi|281180446|dbj|BAI56776.1| conserved hypothetical protein [Escherichia coli SE15] gi|281602769|gb|ADA75753.1| predicted gluconate transport-associated protein [Shigella flexneri 2002017] gi|284822069|gb|ADB98039.1| conserved hypothetical protein [Escherichia coli] gi|284923406|emb|CBG36500.1| putative competence protein [Escherichia coli 042] gi|290764623|gb|ADD58584.1| Fe/S biogenesis protein nfuA [Escherichia coli O55:H7 str. CB9615] gi|291321846|gb|EFE61277.1| IscR-regulated protein YhgI [Escherichia coli B088] gi|291425803|gb|EFE98837.1| DNA uptake protein [Escherichia coli FVEC1412] gi|291431392|gb|EFF04377.1| IscR-regulated protein YhgI [Escherichia coli B185] gi|291468479|gb|EFF10972.1| IscR-regulated protein YhgI [Escherichia coli B354] gi|294494004|gb|ADE92760.1| protein GntY [Escherichia coli IHE3034] gi|298276570|gb|EFI18088.1| DNA uptake protein [Escherichia coli FVEC1302] gi|299880991|gb|EFI89202.1| IscR-regulated protein YhgI [Escherichia coli MS 196-1] gi|300298003|gb|EFJ54388.1| IscR-regulated protein YhgI [Escherichia coli MS 185-1] gi|300306168|gb|EFJ60688.1| IscR-regulated protein YhgI [Escherichia coli MS 200-1] gi|300316464|gb|EFJ66248.1| IscR-regulated protein YhgI [Escherichia coli MS 175-1] gi|300357459|gb|EFJ73329.1| IscR-regulated protein YhgI [Escherichia coli MS 198-1] gi|300399190|gb|EFJ82728.1| IscR-regulated protein YhgI [Escherichia coli MS 69-1] gi|300400857|gb|EFJ84395.1| IscR-regulated protein YhgI [Escherichia coli MS 84-1] gi|300408099|gb|EFJ91637.1| IscR-regulated protein YhgI [Escherichia coli MS 45-1] gi|300413614|gb|EFJ96924.1| IscR-regulated protein YhgI [Escherichia coli MS 115-1] gi|300417099|gb|EFK00410.1| IscR-regulated protein YhgI [Escherichia coli MS 182-1] gi|300453498|gb|EFK17118.1| IscR-regulated protein YhgI [Escherichia coli MS 116-1] gi|300457646|gb|EFK21139.1| IscR-regulated protein YhgI [Escherichia coli MS 21-1] gi|300461108|gb|EFK24601.1| IscR-regulated protein YhgI [Escherichia coli MS 187-1] gi|300524787|gb|EFK45856.1| IscR-regulated protein YhgI [Escherichia coli MS 119-7] gi|300532279|gb|EFK53341.1| IscR-regulated protein YhgI [Escherichia coli MS 107-1] gi|300842456|gb|EFK70216.1| IscR-regulated protein YhgI [Escherichia coli MS 124-1] gi|300844197|gb|EFK71957.1| IscR-regulated protein YhgI [Escherichia coli MS 78-1] gi|301075843|gb|EFK90649.1| IscR-regulated protein YhgI [Escherichia coli MS 146-1] gi|305850644|gb|EFM51101.1| putative DNA uptake protein [Escherichia coli NC101] gi|306908065|gb|EFN38565.1| IscR-regulated protein YhgI [Escherichia coli W] gi|307555500|gb|ADN48275.1| putative thioredoxin-like protein [Escherichia coli ABU 83972] gi|307628476|gb|ADN72780.1| putative DNA uptake protein [Escherichia coli UM146] gi|308121735|gb|EFO58997.1| IscR-regulated protein YhgI [Escherichia coli MS 145-7] gi|308926961|gb|EFP72437.1| nifU-like domain protein [Shigella dysenteriae 1617] gi|309703824|emb|CBJ03165.1| putative competence protein [Escherichia coli ETEC H10407] gi|310334699|gb|EFQ00904.1| nifU-like domain protein [Escherichia coli 1827-70] gi|312287099|gb|EFR15009.1| nifU-like domain protein [Escherichia coli 2362-75] gi|312947962|gb|ADR28789.1| putative DNA uptake protein [Escherichia coli O83:H1 str. NRG 857C] gi|313647284|gb|EFS11736.1| nifU-like domain protein [Shigella flexneri 2a str. 2457T] gi|315062692|gb|ADT77019.1| predicted gluconate transport associated protein [Escherichia coli W] gi|315137990|dbj|BAJ45149.1| Fe/S biogenesis protein nfuA [Escherichia coli DH1] gi|315256005|gb|EFU35973.1| IscR-regulated protein YhgI [Escherichia coli MS 85-1] gi|315286086|gb|EFU45524.1| IscR-regulated protein YhgI [Escherichia coli MS 110-3] gi|315291745|gb|EFU51101.1| IscR-regulated protein YhgI [Escherichia coli MS 153-1] gi|315295925|gb|EFU55234.1| IscR-regulated protein YhgI [Escherichia coli MS 16-3] gi|315614682|gb|EFU95322.1| nifU-like domain protein [Escherichia coli 3431] gi|320175494|gb|EFW50592.1| NfuA Fe-S protein maturation [Shigella dysenteriae CDC 74-1112] gi|320185943|gb|EFW60692.1| NfuA Fe-S protein maturation [Shigella flexneri CDC 796-83] gi|320197373|gb|EFW71988.1| NfuA Fe-S protein maturation [Escherichia coli WV_060327] gi|320199587|gb|EFW74177.1| NfuA Fe-S protein maturation [Escherichia coli EC4100B] gi|320639696|gb|EFX09290.1| Fe/S biogenesis protein NfuA [Escherichia coli O157:H7 str. G5101] gi|320645194|gb|EFX14210.1| Fe/S biogenesis protein NfuA [Escherichia coli O157:H- str. 493-89] gi|320650505|gb|EFX18971.1| Fe/S biogenesis protein NfuA [Escherichia coli O157:H- str. H 2687] gi|320655697|gb|EFX23620.1| Fe/S biogenesis protein NfuA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661481|gb|EFX28896.1| Fe/S biogenesis protein NfuA [Escherichia coli O55:H7 str. USDA 5905] gi|320666504|gb|EFX33487.1| Fe/S biogenesis protein NfuA [Escherichia coli O157:H7 str. LSU-61] gi|323154249|gb|EFZ40452.1| nifU-like domain protein [Escherichia coli EPECa14] gi|323162799|gb|EFZ48636.1| nifU-like domain protein [Escherichia coli E128010] gi|323164978|gb|EFZ50769.1| nifU-like domain protein [Shigella sonnei 53G] gi|323174049|gb|EFZ59677.1| nifU-like domain protein [Escherichia coli LT-68] gi|323179060|gb|EFZ64634.1| nifU-like domain protein [Escherichia coli 1180] gi|323182875|gb|EFZ68276.1| nifU-like domain protein [Escherichia coli 1357] gi|323188996|gb|EFZ74280.1| nifU-like domain protein [Escherichia coli RN587/1] gi|323376720|gb|ADX48988.1| IscR-regulated protein YhgI [Escherichia coli KO11] gi|323934596|gb|EGB30996.1| IscR-regulated protein YhgI [Escherichia coli E1520] gi|323939366|gb|EGB35577.1| IscR-regulated protein YhgI [Escherichia coli E482] gi|323944364|gb|EGB40439.1| IscR-regulated protein YhgI [Escherichia coli H120] gi|323950071|gb|EGB45954.1| IscR-regulated protein YhgI [Escherichia coli H252] gi|323954649|gb|EGB50431.1| IscR-regulated protein YhgI [Escherichia coli H263] gi|323959586|gb|EGB55238.1| IscR-regulated protein YhgI [Escherichia coli H489] gi|323966227|gb|EGB61663.1| IscR-regulated protein YhgI [Escherichia coli M863] gi|323970012|gb|EGB65287.1| IscR-regulated protein YhgI [Escherichia coli TA007] gi|323974782|gb|EGB69894.1| IscR-regulated protein YhgI [Escherichia coli TW10509] gi|324009392|gb|EGB78611.1| IscR-regulated protein YhgI [Escherichia coli MS 57-2] gi|324014596|gb|EGB83815.1| IscR-regulated protein YhgI [Escherichia coli MS 60-1] gi|324018651|gb|EGB87870.1| IscR-regulated protein YhgI [Escherichia coli MS 117-3] gi|324111727|gb|EGC05707.1| IscR-regulated protein YhgI [Escherichia fergusonii B253] gi|324116389|gb|EGC10308.1| IscR-regulated protein YhgI [Escherichia coli E1167] gi|325498956|gb|EGC96815.1| putative DNA uptake protein [Escherichia fergusonii ECD227] gi|326337622|gb|EGD61457.1| NfuA Fe-S protein maturation [Escherichia coli O157:H7 str. 1044] gi|326344627|gb|EGD68376.1| NfuA Fe-S protein maturation [Escherichia coli O157:H7 str. 1125] gi|327251050|gb|EGE62743.1| nifU-like domain protein [Escherichia coli STEC_7v] gi|330909447|gb|EGH37961.1| NfuA Fe-S protein maturation [Escherichia coli AA86] gi|331036408|gb|EGI08634.1| IscR-regulated protein YhgI [Escherichia coli H736] gi|331047007|gb|EGI19085.1| IscR-regulated protein YhgI [Escherichia coli M718] gi|331052918|gb|EGI24951.1| IscR-regulated protein YhgI [Escherichia coli TA206] gi|331057530|gb|EGI29516.1| IscR-regulated protein YhgI [Escherichia coli TA143] gi|331062298|gb|EGI34218.1| IscR-regulated protein YhgI [Escherichia coli TA271] gi|331067811|gb|EGI39209.1| IscR-regulated protein YhgI [Escherichia coli TA280] gi|331072650|gb|EGI43975.1| IscR-regulated protein YhgI [Escherichia coli H591] gi|331077427|gb|EGI48639.1| IscR-regulated protein YhgI [Escherichia coli H299] gi|332085565|gb|EGI90731.1| nifU-like domain protein [Shigella boydii 5216-82] gi|332090470|gb|EGI95568.1| nifU-like domain protein [Shigella boydii 3594-74] gi|332104313|gb|EGJ07659.1| Fe/S biogenesis protein nfuA [Shigella sp. D9] gi|332345367|gb|AEE58701.1| conserved hypothetical protein [Escherichia coli UMNK88] gi|332749484|gb|EGJ79901.1| nifU-like domain protein [Shigella flexneri K-671] gi|332750331|gb|EGJ80742.1| nifU-like domain protein [Shigella flexneri 4343-70] gi|332751428|gb|EGJ81831.1| nifU-like domain protein [Shigella flexneri 2747-71] gi|332763599|gb|EGJ93838.1| iron-sulfur cluster scaffold protein [Shigella flexneri 2930-71] gi|332996395|gb|EGK16022.1| nifU-like domain protein [Shigella flexneri VA-6] gi|332996634|gb|EGK16259.1| nifU-like domain protein [Shigella flexneri K-272] gi|332997137|gb|EGK16753.1| nifU-like domain protein [Shigella flexneri K-218] gi|333012337|gb|EGK31718.1| nifU-like domain protein [Shigella flexneri K-304] gi|333013043|gb|EGK32419.1| nifU-like domain protein [Shigella flexneri K-227] Length = 191 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 3/79 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L +++ P +A GG + + + DG L G C+GC TLK Sbjct: 101 VADDAPLMERVEYMLQSQINPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F PE+K +R Sbjct: 161 EGIEKQLLNEF-PELKGVR 178 >gi|320191574|gb|EFW66224.1| NfuA Fe-S protein maturation [Escherichia coli O157:H7 str. EC1212] Length = 191 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 3/79 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L +++ P +A GG + + + DG L G C+GC TLK Sbjct: 101 VADDAPLMERVEYMLQSQINPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F PE+K +R Sbjct: 161 EGIEKQLLNEF-PELKGVR 178 >gi|331649212|ref|ZP_08350298.1| IscR-regulated protein YhgI [Escherichia coli M605] gi|331041710|gb|EGI13854.1| IscR-regulated protein YhgI [Escherichia coli M605] Length = 191 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 3/79 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L +++ P +A GG + + + DG L G C+GC TLK Sbjct: 101 VADDAPLMERVEYMLQSQINPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F PE+K +R Sbjct: 161 EGIEKQLLNEF-PELKGVR 178 >gi|116783204|gb|ABK22836.1| unknown [Picea sitchensis] Length = 248 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 40/74 (54%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 A+ + E++ + VRP + DGG++ +V L ++GAC CPS+ T+K G+ Sbjct: 97 ALTEENVEMVLDEVRPYLMSDGGNVELYDIDGLVVKLKLQGACGSCPSSLMTMKMGIERR 156 Query: 176 LNHFVPEVKDIRTV 189 L +PE+ + V Sbjct: 157 LMEQIPEIVAVEQV 170 >gi|320181906|gb|EFW56812.1| NfuA Fe-S protein maturation [Shigella boydii ATCC 9905] Length = 191 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 3/79 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L +++ P +A GG + + + DG L G C+GC TLK Sbjct: 101 VADDAPLMERVEYMLQSQINPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F PE+K +R Sbjct: 161 EGIEKQLLNEF-PELKGVR 178 >gi|242237773|ref|YP_002985954.1| DNA uptake protein [Dickeya dadantii Ech703] gi|242129830|gb|ACS84132.1| IscR-regulated protein YhgI [Dickeya dadantii Ech703] Length = 191 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ VL +++ P +A GG + + + +G L G C+GC TLK Sbjct: 101 VSDDAPLMERVEYVLQSQINPQLAGHGGRVTLMEITEEGYAILQFGGGCNGCSMVDYTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 EGIEKELLQKFPELKGVR 178 >gi|331700077|ref|YP_004336316.1| nitrogen-fixing NifU domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326954766|gb|AEA28463.1| nitrogen-fixing NifU domain-containing protein [Pseudonocardia dioxanivorans CB1190] Length = 306 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 VRP + GGD+ F DG+ ++ + GAC+GC ++ TL+ V L VP ++ + Sbjct: 115 VRPQLQSHGGDVAFAHVADGVAYVRLEGACNGCSMSAVTLRNLVEEALVAQVPAIRSV 172 >gi|296272416|ref|YP_003655047.1| nitrogen-fixing NifU domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296096590|gb|ADG92540.1| nitrogen-fixing NifU domain protein [Arcobacter nitrofigilis DSM 7299] Length = 326 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 7/73 (9%) Query: 117 VVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI----VFLSMRGACSGCPSASETLK 169 +VQRIK EVLD +RP +A DGG++ ++ +++ GAC+GC S Sbjct: 247 IVQRIKLIDEVLDGEIRPMLAMDGGNMEIIDIKENTPHYDIYIRYLGACNGCASGDTGTL 306 Query: 170 YGVANILNHFVPE 182 Y + ++L V E Sbjct: 307 YAIESVLKQKVDE 319 >gi|170724529|ref|YP_001758555.1| putative DNA uptake protein [Shewanella woodyi ATCC 51908] gi|254767328|sp|B1KM47|NFUA_SHEWM RecName: Full=Fe/S biogenesis protein nfuA gi|169809876|gb|ACA84460.1| IscR-regulated protein YhgI [Shewanella woodyi ATCC 51908] Length = 192 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + SD+++ +RI+ V+ + + P +A GG+I + + DG+ L G C+GC TLK Sbjct: 101 VASDASLNERIEYVIQSEINPQLASHGGNIMLLEVTEDGVAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVP 181 G+ L P Sbjct: 161 DGIEKQLLEMFP 172 >gi|16804435|ref|NP_465920.1| hypothetical protein lmo2397 [Listeria monocytogenes EGD-e] gi|47095874|ref|ZP_00233478.1| NifU family protein [Listeria monocytogenes str. 1/2a F6854] gi|224500156|ref|ZP_03668505.1| hypothetical protein LmonF1_10934 [Listeria monocytogenes Finland 1988] gi|224503455|ref|ZP_03671762.1| hypothetical protein LmonFR_13257 [Listeria monocytogenes FSL R2-561] gi|254827975|ref|ZP_05232662.1| NifU family protein [Listeria monocytogenes FSL N3-165] gi|254831180|ref|ZP_05235835.1| hypothetical protein Lmon1_07458 [Listeria monocytogenes 10403S] gi|254900468|ref|ZP_05260392.1| hypothetical protein LmonJ_11657 [Listeria monocytogenes J0161] gi|254913294|ref|ZP_05263306.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254937675|ref|ZP_05269372.1| NifU family protein [Listeria monocytogenes F6900] gi|284802839|ref|YP_003414704.1| hypothetical protein LM5578_2596 [Listeria monocytogenes 08-5578] gi|284995980|ref|YP_003417748.1| hypothetical protein LM5923_2545 [Listeria monocytogenes 08-5923] gi|16411885|emb|CAD00475.1| lmo2397 [Listeria monocytogenes EGD-e] gi|47015751|gb|EAL06680.1| NifU family protein [Listeria monocytogenes str. 1/2a F6854] gi|258600358|gb|EEW13683.1| NifU family protein [Listeria monocytogenes FSL N3-165] gi|258610275|gb|EEW22883.1| NifU family protein [Listeria monocytogenes F6900] gi|284058401|gb|ADB69342.1| hypothetical protein LM5578_2596 [Listeria monocytogenes 08-5578] gi|284061447|gb|ADB72386.1| hypothetical protein LM5923_2545 [Listeria monocytogenes 08-5923] gi|293591295|gb|EFF99629.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 78 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 127 NRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKD 185 + RP + RDGGD + + +DGIV + + GAC CPS+ TLK G+ L + K+ Sbjct: 14 KKFRPFLVRDGGDYELIEVTQDGIVKIKLLGACETCPSSDMTLKMGIELTLAEKIIGFKE 73 Query: 186 IRTV 189 + V Sbjct: 74 VVQV 77 >gi|269140629|ref|YP_003297330.1| hypothetical protein ETAE_3288 [Edwardsiella tarda EIB202] gi|294638123|ref|ZP_06716379.1| IscR-regulated protein YhgI [Edwardsiella tarda ATCC 23685] gi|267986290|gb|ACY86119.1| hypothetical protein ETAE_3288 [Edwardsiella tarda EIB202] gi|291088690|gb|EFE21251.1| IscR-regulated protein YhgI [Edwardsiella tarda ATCC 23685] gi|304560415|gb|ADM43079.1| NfuA [Edwardsiella tarda FL6-60] Length = 191 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L +++ P +A GG + D G L G C+GC TLK Sbjct: 101 VADDAPLIERVEYILQSQINPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDYTLK 160 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ L PE+K +R + Sbjct: 161 EGIEKELLQRFPELKGVRDL 180 >gi|28896920|ref|NP_796525.1| putative DNA uptake protein [Vibrio parahaemolyticus RIMD 2210633] gi|153837871|ref|ZP_01990538.1| thioredoxin [Vibrio parahaemolyticus AQ3810] gi|260365893|ref|ZP_05778387.1| IscR-regulated protein YhgI [Vibrio parahaemolyticus K5030] gi|260877820|ref|ZP_05890175.1| IscR-regulated protein YhgI [Vibrio parahaemolyticus AN-5034] gi|260895531|ref|ZP_05904027.1| IscR-regulated protein YhgI [Vibrio parahaemolyticus Peru-466] gi|260902555|ref|ZP_05910950.1| IscR-regulated protein YhgI [Vibrio parahaemolyticus AQ4037] gi|51702006|sp|Q87TC4|NFUA_VIBPA RecName: Full=Fe/S biogenesis protein nfuA gi|28805128|dbj|BAC58409.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149748734|gb|EDM59579.1| thioredoxin [Vibrio parahaemolyticus AQ3810] gi|308088597|gb|EFO38292.1| IscR-regulated protein YhgI [Vibrio parahaemolyticus Peru-466] gi|308089948|gb|EFO39643.1| IscR-regulated protein YhgI [Vibrio parahaemolyticus AN-5034] gi|308109708|gb|EFO47248.1| IscR-regulated protein YhgI [Vibrio parahaemolyticus AQ4037] gi|308113467|gb|EFO51007.1| IscR-regulated protein YhgI [Vibrio parahaemolyticus K5030] gi|328471695|gb|EGF42572.1| Fe/S biogenesis protein NfuA [Vibrio parahaemolyticus 10329] Length = 194 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +V+R++ V+ +V P +A GG + + + G+ ++ G C+GC TLK Sbjct: 103 VSDDAPLVERVEYVIQTQVNPQLAGHGGHVNLVEITEAGVAIVAFGGGCNGCSMVDVTLK 162 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN FV E+ +R Sbjct: 163 EGIEKELLNQFVGELTAVR 181 >gi|312141489|ref|YP_004008825.1| fe-s cluster assembly protein nifu-like [Rhodococcus equi 103S] gi|311890828|emb|CBH50147.1| putative Fe-S cluster assembly protein NifU-like [Rhodococcus equi 103S] Length = 311 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 V R++ LD+ VRP + GGD+ + DG+V L + G+C GCPS++ TL+ V Sbjct: 95 VETRVRTALDS-VRPYLGSHGGDVELVDVTDDGVVRLRLLGSCHGCPSSAVTLQLAVEGA 153 Query: 176 LNHFVPEVKDI 186 + PE I Sbjct: 154 VQAAAPETTAI 164 >gi|288817769|ref|YP_003432116.1| nitrogen-fixing NifU-like protein [Hydrogenobacter thermophilus TK-6] gi|288787168|dbj|BAI68915.1| nitrogen-fixing NifU-like protein [Hydrogenobacter thermophilus TK-6] gi|308751367|gb|ADO44850.1| Rieske (2Fe-2S) iron-sulfur domain protein [Hydrogenobacter thermophilus TK-6] Length = 275 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 15/58 (25%), Positives = 33/58 (56%) Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +RP + GGD+ F ++ +++ +RG C+GC S TL+ + + ++P ++ + Sbjct: 98 IRPYIRSHGGDVEFVDLKEKTLYVRLRGTCTGCSQVSFTLQQTILEAVQAYIPHIEKV 155 >gi|325677298|ref|ZP_08156964.1| Rieske family iron-sulfur cluster-binding protein [Rhodococcus equi ATCC 33707] gi|325551995|gb|EGD21691.1| Rieske family iron-sulfur cluster-binding protein [Rhodococcus equi ATCC 33707] Length = 311 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 V R++ LD+ VRP + GGD+ + DG+V L + G+C GCPS++ TL+ V Sbjct: 95 VETRVRTALDS-VRPYLGSHGGDVELVDVTDDGVVRLRLLGSCHGCPSSAVTLQLAVEGA 153 Query: 176 LNHFVPEVKDI 186 + PE I Sbjct: 154 VQAAAPETTAI 164 >gi|260460215|ref|ZP_05808467.1| Rieske (2Fe-2S) domain protein [Mesorhizobium opportunistum WSM2075] gi|259033860|gb|EEW35119.1| Rieske (2Fe-2S) domain protein [Mesorhizobium opportunistum WSM2075] Length = 290 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +R++ LD VRP +A GG++ R + + GAC GCP+++ T GV + Sbjct: 96 ERVEAALDG-VRPMLASHGGNVELVNVRPPAIEVRFVGACDGCPASALTFHAGVKKAIEE 154 Query: 179 FVPEVKDI 186 PE+ DI Sbjct: 155 ACPEITDI 162 >gi|253690287|ref|YP_003019477.1| IscR-regulated protein YhgI [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259511744|sp|C6DH68|NFUA_PECCP RecName: Full=Fe/S biogenesis protein nfuA gi|251756865|gb|ACT14941.1| IscR-regulated protein YhgI [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 191 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 ++ + +++R++ VL +++ P +A GG + D G+ L G C+GC TLK Sbjct: 101 VDDSAPLMERVEYVLQSQINPQLAGHGGRVTLMEITDDGMAILQFGGGCNGCSMVDYTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 EGIEKELLEKFPELKGVR 178 >gi|120596952|ref|YP_961526.1| putative DNA uptake protein [Shewanella sp. W3-18-1] gi|146294876|ref|YP_001185300.1| putative DNA uptake protein [Shewanella putrefaciens CN-32] gi|150383450|sp|A1RE77|NFUA_SHESW RecName: Full=Fe/S biogenesis protein nfuA gi|166990531|sp|A4YC18|NFUA_SHEPC RecName: Full=Fe/S biogenesis protein nfuA gi|120557045|gb|ABM22972.1| HesB/YadR/YfhF-family protein [Shewanella sp. W3-18-1] gi|145566566|gb|ABP77501.1| HesB/YadR/YfhF-family protein [Shewanella putrefaciens CN-32] gi|319424543|gb|ADV52617.1| IscR-regulated protein YhgI [Shewanella putrefaciens 200] Length = 192 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +V+RI+ V+ + + P +A GG+I+ + +G+ L G C+GC TLK Sbjct: 101 VSGDAPLVERIEYVIQSEINPQLASHGGNIMLVEITSEGVAVLQFGGGCNGCSQVDITLK 160 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L+ F E+ +R V Sbjct: 161 DGIEKQLLDMFPGELTGVRDV 181 >gi|238921502|ref|YP_002935017.1| DNA uptake protein [Edwardsiella ictaluri 93-146] gi|259511742|sp|C5BGT5|NFUA_EDWI9 RecName: Full=Fe/S biogenesis protein nfuA gi|238871071|gb|ACR70782.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 191 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L +++ P +A GG + D G L G C+GC TLK Sbjct: 101 VADDAPLIERVEYILQSQINPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDYTLK 160 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ L PE+K +R + Sbjct: 161 EGIEKELLQRFPELKGVRDL 180 >gi|251787885|ref|YP_003002606.1| putative DNA uptake protein [Dickeya zeae Ech1591] gi|247536506|gb|ACT05127.1| IscR-regulated protein YhgI [Dickeya zeae Ech1591] Length = 191 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 D+ +++R++ VL +++ P +A GG + + + +G L G C+GC TLK G+ Sbjct: 104 DAPLMERVEYVLQSQINPQLAGHGGRVTLMEITEEGYAILQFGGGCNGCSMVDYTLKEGI 163 Query: 173 ANILNHFVPEVKDIR 187 L PE+K +R Sbjct: 164 EKELLQKFPELKGVR 178 >gi|161505922|ref|YP_001573034.1| putative DNA uptake protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189041726|sp|A9MMB3|NFUA_SALAR RecName: Full=Fe/S biogenesis protein nfuA gi|160867269|gb|ABX23892.1| hypothetical protein SARI_04103 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 191 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ VL +++ P +A GG + D G L G C+GC TLK Sbjct: 101 VADDAPLMERVEYVLQSQINPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F PE+K +R Sbjct: 161 EGIEKQLLNEF-PELKGVR 178 >gi|262273566|ref|ZP_06051380.1| NfuA Fe-S protein maturation [Grimontia hollisae CIP 101886] gi|262222544|gb|EEY73855.1| NfuA Fe-S protein maturation [Grimontia hollisae CIP 101886] Length = 194 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ V+ +V P +A GG I + + DG+ + G C+GC TLK Sbjct: 103 VADDAPLLERVEYVIQTQVNPQLAGHGGHINLIEITEDGVAVIQFGGGCNGCSMVDVTLK 162 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L F E+K +R V Sbjct: 163 DGIEKQLLEEFSGELKGVRDV 183 >gi|126663010|ref|ZP_01734008.1| hypothetical protein FBBAL38_06650 [Flavobacteria bacterium BAL38] gi|126624668|gb|EAZ95358.1| hypothetical protein FBBAL38_06650 [Flavobacteria bacterium BAL38] Length = 79 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 127 NRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKD 185 N +RP + DGGDI + D V + + GAC+ C + T+K GV + FVP+++ Sbjct: 15 NEIRPFLNSDGGDITLVEIIDDKHVKVRLEGACTNCSLSISTMKAGVETTIKKFVPQIET 74 Query: 186 IRTV 189 + + Sbjct: 75 VENI 78 >gi|238788981|ref|ZP_04632771.1| Fe/S bioproteinsis protein nfuA [Yersinia frederiksenii ATCC 33641] gi|238723008|gb|EEQ14658.1| Fe/S bioproteinsis protein nfuA [Yersinia frederiksenii ATCC 33641] Length = 191 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLK 169 ++ ++ +++R++ VL +++ P +A GG + D + L G C+GC TLK Sbjct: 101 VDDNAPLMERVEYVLQSQINPQLASHGGRVTLMEITPDALAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 EGIEKELLQKFPELKGVR 178 >gi|295132384|ref|YP_003583060.1| NifU-like/thioredoxin-like protein [Zunongwangia profunda SM-A87] gi|294980399|gb|ADF50864.1| NifU-like/thioredoxin-like protein [Zunongwangia profunda SM-A87] Length = 80 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 128 RVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +RP + DGGDI D +V + + GAC GC TLK GV + +VP+++++ Sbjct: 16 EIRPFLESDGGDISLVAIEDDRLVKVQLEGACVGCSVNQMTLKSGVEMTIKKYVPQIEEV 75 >gi|311747521|ref|ZP_07721306.1| NifU domain protein [Algoriphagus sp. PR1] gi|126574883|gb|EAZ79254.1| NifU domain protein [Algoriphagus sp. PR1] Length = 82 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +I+ LD +RP + DGG++ + + D ++ + M G+C CP +S TLK GV + + Sbjct: 7 NKIEFALDT-IRPYLEADGGNVRIVELTEDMVLRIEMLGSCGSCPMSSMTLKAGVEDAIK 65 Query: 178 HFVPEVKDIRTV 189 +PE+ + + Sbjct: 66 RAIPEITKVEAI 77 >gi|222056132|ref|YP_002538494.1| Fe-S cluster assembly protein NifU [Geobacter sp. FRC-32] gi|221565421|gb|ACM21393.1| Fe-S cluster assembly protein NifU [Geobacter sp. FRC-32] Length = 286 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 32/53 (60%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 +Q I+E L+N VRP + DGGD+ G V ++ R AC+GC S+ T K+ Sbjct: 214 MQLIQETLENEVRPQLWADGGDLELIDIDGGKVQIAFRKACAGCASSGFTAKF 266 >gi|260599716|ref|YP_003212287.1| Fe/S biogenesis protein NfuA [Cronobacter turicensis z3032] gi|260218893|emb|CBA34248.1| Fe/S biogenesis protein nfuA [Cronobacter turicensis z3032] Length = 191 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L +++ P +A GG + D G L G C+GC TLK Sbjct: 101 VADDAPLMERVEYLLQSQINPQLAGHGGRVTLMEITDEGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F PE+K +R Sbjct: 161 EGIEKQLLNEF-PELKGVR 178 >gi|315283493|ref|ZP_07871670.1| nitrogen fixation protein NifU [Listeria marthii FSL S4-120] gi|313612862|gb|EFR86827.1| nitrogen fixation protein NifU [Listeria marthii FSL S4-120] Length = 78 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 127 NRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKD 185 + RP + RDGGD + + +DGIV + + GAC CPS+ TLK G+ L + K+ Sbjct: 14 KKFRPFLVRDGGDYELVEVTQDGIVKIKLLGACETCPSSDMTLKMGIELTLAEKIIGFKE 73 Query: 186 IRTV 189 + V Sbjct: 74 VVQV 77 >gi|157963821|ref|YP_001503855.1| putative DNA uptake protein [Shewanella pealeana ATCC 700345] gi|189041730|sp|A8H9T3|NFUA_SHEPA RecName: Full=Fe/S biogenesis protein nfuA gi|157848821|gb|ABV89320.1| HesB/YadR/YfhF-family protein [Shewanella pealeana ATCC 700345] Length = 192 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+++ +RI+ V+ + + P +A GG+I+ + DGI L G C+GC TLK Sbjct: 101 VSDDASLSERIEYVIQSEINPQLASHGGNIMLVEITEDGIAVLQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L+ F E+ ++ V Sbjct: 161 DGIEKQLLDMFPGELSGVKDV 181 >gi|126434715|ref|YP_001070406.1| NifU domain-containing protein [Mycobacterium sp. JLS] gi|126234515|gb|ABN97915.1| nitrogen-fixing NifU domain protein [Mycobacterium sp. JLS] Length = 294 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 +V +RI + LD VRP + GGD+ G L G+C CPS++ TL+ V + Sbjct: 94 SVERRITDALDT-VRPYLGSHGGDVHLLGVDGDTARLRFAGSCKSCPSSAVTLELAVEDA 152 Query: 176 LNHFVPEVKDIRTV 189 + PE++ I V Sbjct: 153 IRAAAPEIETIEVV 166 >gi|284043999|ref|YP_003394339.1| nitrogen-fixing NifU domain protein [Conexibacter woesei DSM 14684] gi|283948220|gb|ADB50964.1| nitrogen-fixing NifU domain protein [Conexibacter woesei DSM 14684] Length = 306 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +R++ LD VRP +A GGD+ ++G+ L + G+C GC +++ TL+ V L Sbjct: 108 ERVRAALDE-VRPYLASHGGDVELLAVQEGVARLRLVGSCRGCAASASTLEAVVEQALEQ 166 Query: 179 FVPEV 183 P++ Sbjct: 167 AAPDL 171 >gi|218780491|ref|YP_002431809.1| Fe-S cluster assembly protein NifU [Desulfatibacillum alkenivorans AK-01] gi|218761875|gb|ACL04341.1| Fe-S cluster assembly protein NifU [Desulfatibacillum alkenivorans AK-01] Length = 271 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 33/63 (52%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +Q I+E L+ VRP + +DGGDI V + ++G CS C ++ TLK V L Sbjct: 200 IQLIQETLEREVRPTLKQDGGDIELVDVDGDKVLVRLQGRCSSCQASQATLKGHVEAKLR 259 Query: 178 HFV 180 V Sbjct: 260 ELV 262 >gi|111608856|gb|ABH10986.1| Fe-S cluster assembly protein NifU [Polytomella parva] Length = 168 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 D ++ + + LD +RP + DGGD+ ++G VFL +G+CS C S +T+K G+ Sbjct: 30 DVLSIENVNKSLD-YIRPVLMNDGGDVEIVKIQNGKVFLRFQGSCSTCTSQEDTMKGGIE 88 Query: 174 NILNHFVPEV 183 L E+ Sbjct: 89 TTLRSSFGEL 98 >gi|94270459|ref|ZP_01291748.1| Fe-S cluster assembly protein NifU [delta proteobacterium MLMS-1] gi|93450788|gb|EAT01836.1| Fe-S cluster assembly protein NifU [delta proteobacterium MLMS-1] Length = 277 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++ I++VL+ ++PA+ +DGGDI V +S+RGAC+ C + T+K V L Sbjct: 205 IKMIEDVLEREIKPALRKDGGDIELVDLDGDFVTVSLRGACASCKKSQTTIKDYVEKKLR 264 Query: 178 HFV 180 V Sbjct: 265 EQV 267 >gi|94267278|ref|ZP_01290831.1| Fe-S cluster assembly protein NifU [delta proteobacterium MLMS-1] gi|93452070|gb|EAT02758.1| Fe-S cluster assembly protein NifU [delta proteobacterium MLMS-1] Length = 277 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++ I++VL+ ++PA+ +DGGDI V +S+RGAC+ C + T+K V L Sbjct: 205 IKMIEDVLEREIKPALRKDGGDIELVDLDGDFVTVSLRGACASCKKSQTTIKDYVEKKLR 264 Query: 178 HFV 180 V Sbjct: 265 EQV 267 >gi|289668991|ref|ZP_06490066.1| hypothetical protein XcampmN_10969 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 200 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARD-GGDIVFKGYR-DGIVFLSMRGACSGCPSAS 165 G+ +++V+R++ V++N + P +A GG + + DG+V L G C GC A Sbjct: 100 GEAPAESASMVERVRWVVENEINPQLASSHGGRVAVQEVSADGVVLLRFGGGCHGCGMAD 159 Query: 166 ETLKYGVANILNHFVPEVKDIR 187 TLK G+ L VP V +R Sbjct: 160 VTLKQGIEKTLMGRVPGVIAVR 181 >gi|108799109|ref|YP_639306.1| nitrogen-fixing NifU-like protein [Mycobacterium sp. MCS] gi|119868224|ref|YP_938176.1| NifU domain-containing protein [Mycobacterium sp. KMS] gi|108769528|gb|ABG08250.1| nitrogen-fixing NifU-like protein [Mycobacterium sp. MCS] gi|119694313|gb|ABL91386.1| nitrogen-fixing NifU domain protein [Mycobacterium sp. KMS] Length = 294 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 +V +RI + LD VRP + GGD+ G L G+C CPS++ TL+ V + Sbjct: 94 SVERRITDALDT-VRPYLGSHGGDVHLLGVDGDTARLRFAGSCKSCPSSAVTLELAVEDA 152 Query: 176 LNHFVPEVKDIRTV 189 + PE++ I V Sbjct: 153 IRAAAPEIETIEVV 166 >gi|126656692|ref|ZP_01727906.1| hypothetical protein CY0110_23676 [Cyanothece sp. CCY0110] gi|126621912|gb|EAZ92620.1| hypothetical protein CY0110_23676 [Cyanothece sp. CCY0110] Length = 286 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILN 177 +RI++ L+ VRP + GD+ + V + + G CS CP+++ T+K GV + Sbjct: 95 KRIQQALET-VRPGLKSHHGDVELVAIKLPDTVEVQLVGTCSNCPASTLTMKQGVEQAIK 153 Query: 178 HFVPEVKDIRTV 189 + PE+K++ +V Sbjct: 154 TYCPEIKNVISV 165 >gi|254421266|ref|ZP_05034984.1| Fe-S cluster assembly protein NifU [Synechococcus sp. PCC 7335] gi|196188755|gb|EDX83719.1| Fe-S cluster assembly protein NifU [Synechococcus sp. PCC 7335] Length = 294 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 34/63 (53%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + I++V+ VRP + DGGDI +V + + GAC GC S+SETLK + L Sbjct: 223 INLIQQVIAEDVRPILLADGGDIELYDVDGDVVRVLLTGACGGCASSSETLKNSIETSLQ 282 Query: 178 HFV 180 V Sbjct: 283 AKV 285 >gi|156936423|ref|YP_001440339.1| putative DNA uptake protein [Cronobacter sakazakii ATCC BAA-894] gi|166990524|sp|A7ME80|NFUA_ENTS8 RecName: Full=Fe/S biogenesis protein nfuA gi|156534677|gb|ABU79503.1| hypothetical protein ESA_04324 [Cronobacter sakazakii ATCC BAA-894] Length = 191 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L +++ P +A GG + D G L G C+GC TLK Sbjct: 101 VADDAPLMERVEYMLQSQINPQLAGHGGRVTLMEITDEGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F PE+K +R Sbjct: 161 EGIEKQLLNEF-PELKGVR 178 >gi|148263889|ref|YP_001230595.1| Fe-S cluster assembly protein NifU [Geobacter uraniireducens Rf4] gi|146397389|gb|ABQ26022.1| Fe-S cluster assembly protein NifU [Geobacter uraniireducens Rf4] Length = 286 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 32/53 (60%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 +Q I+E L+N VRP + DGGD+ G V ++ R AC+GC S+ T K+ Sbjct: 214 MQLIQETLENEVRPQLWADGGDLELIDIDGGKVQIAFRKACAGCASSGFTAKF 266 >gi|271502336|ref|YP_003335362.1| IscR-regulated protein YhgI [Dickeya dadantii Ech586] gi|270345891|gb|ACZ78656.1| IscR-regulated protein YhgI [Dickeya dadantii Ech586] Length = 191 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 D+ +++R++ VL +++ P +A GG + + + +G L G C+GC TLK G+ Sbjct: 104 DAPLMERVEYVLQSQINPQLAGHGGRVSLMEITEEGYAILQFGGGCNGCSMVDYTLKEGI 163 Query: 173 ANILNHFVPEVKDIR 187 L PE+K +R Sbjct: 164 EKELLEKFPELKGVR 178 >gi|94676599|ref|YP_588921.1| yhgI protein [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|254767291|sp|Q1LSZ3|NFUA_BAUCH RecName: Full=Fe/S biogenesis protein nfuA gi|94219749|gb|ABF13908.1| yhgI protein [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 190 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 10/102 (9%) Query: 96 GLGDMKLDDMGSG---------DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY- 145 L D LD++G+ + I+S++ +++R+ +++ + + P +A GG + Sbjct: 76 ALIDCVLDELGTQLIIQAPHLIEKIDSNTPLLERVNQIILSCINPQLANHGGKVTLITIT 135 Query: 146 RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 D + G C+GC S TLK + L PE+K ++ Sbjct: 136 EDMFAIIQFSGGCNGCSMVSYTLKEHIEKKLLQLFPELKGVK 177 >gi|296271179|ref|YP_003653811.1| nitrogen-fixing NifU domain-containing protein [Thermobispora bispora DSM 43833] gi|296093966|gb|ADG89918.1| nitrogen-fixing NifU domain protein [Thermobispora bispora DSM 43833] Length = 289 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 32/58 (55%) Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +RP V GGD+ DG+ ++ ++GAC+GC + + L+ G+ L VP + + Sbjct: 101 IRPMVRSHGGDVELVRVEDGVAYVRLKGACTGCSAPAVALREGIEEALIERVPAITRV 158 >gi|294944201|ref|XP_002784137.1| hypothetical protein Pmar_PMAR003391 [Perkinsus marinus ATCC 50983] gi|239897171|gb|EER15933.1| hypothetical protein Pmar_PMAR003391 [Perkinsus marinus ATCC 50983] Length = 345 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANI 175 VQ++ LD VRP +A DGG + G D G V + GACS C + + KYG+ ++ Sbjct: 189 TVQQVDRALDA-VRPGLAMDGGGVRVLGVEDDGRVRVLFTGACSSCALSDTSTKYGLWDV 247 Query: 176 LNHFVPEVKDIRTV 189 L+ P + I TV Sbjct: 248 LSSKFPVLTSIETV 261 >gi|50123054|ref|YP_052221.1| putative DNA uptake protein [Pectobacterium atrosepticum SCRI1043] gi|81643699|sp|Q6CZL7|NFUA_ERWCT RecName: Full=Fe/S biogenesis protein nfuA gi|49613580|emb|CAG77031.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 191 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 ++ + +++R++ VL +++ P +A GG + D G+ L G C+GC TLK Sbjct: 101 VDDSAPLMERVEYVLQSQINPQLAGHGGRVTLMEITDDGLAILQFGGGCNGCSMVDFTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 EGIEKELLEKFPELKGVR 178 >gi|197286755|ref|YP_002152627.1| DNA uptake protein [Proteus mirabilis HI4320] gi|227355054|ref|ZP_03839465.1| HesB family protein [Proteus mirabilis ATCC 29906] gi|254767308|sp|B4EZM8|NFUA_PROMH RecName: Full=Fe/S biogenesis protein nfuA gi|194684242|emb|CAR45763.1| putative gluconate metabolism protein (putative iron-sulphur cluster biosynthesis) [Proteus mirabilis HI4320] gi|227164841|gb|EEI49688.1| HesB family protein [Proteus mirabilis ATCC 29906] Length = 192 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ VL +++ P +A GG + + + DG L G C+GC TLK Sbjct: 101 VADDAPLIERVEYVLQSQINPQLASHGGRVSLMEITEDGYAILQFGGGCNGCSMIDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F E+K ++ Sbjct: 161 DGIEKELLNLFPEELKGVK 179 >gi|291277316|ref|YP_003517088.1| NifU-like protein [Helicobacter mustelae 12198] gi|290964510|emb|CBG40362.1| nifU protein homolog [Helicobacter mustelae 12198] Length = 326 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 9/87 (10%) Query: 107 SGDFIESDSAVVQRIKEV---LDNRVRPAVARDGGDIVFKGYRDGI-----VFLSMRGAC 158 +G+ +D +VQRIK V +++++RP + DGGD+ +D +++ GAC Sbjct: 236 NGELSFADMTMVQRIKTVDKTINDQIRPMLLMDGGDLEILDIKDSSDGHFDIYIRYMGAC 295 Query: 159 SGCPSASETLKYGVANILNHFV-PEVK 184 SGC SAS + + IL + P+++ Sbjct: 296 SGCASASTGTLFAIEGILQENLDPKIR 322 >gi|46908571|ref|YP_014960.1| NifU family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47092981|ref|ZP_00230761.1| NifU family protein [Listeria monocytogenes str. 4b H7858] gi|217963499|ref|YP_002349177.1| hypothetical protein LMHCC_0201 [Listeria monocytogenes HCC23] gi|226224948|ref|YP_002759055.1| NifU family protein [Listeria monocytogenes Clip81459] gi|254825479|ref|ZP_05230480.1| NifU family protein [Listeria monocytogenes FSL J1-194] gi|254853597|ref|ZP_05242945.1| NifU family protein [Listeria monocytogenes FSL R2-503] gi|254933176|ref|ZP_05266535.1| NifU family protein [Listeria monocytogenes HPB2262] gi|254994154|ref|ZP_05276344.1| NifU family protein [Listeria monocytogenes FSL J2-064] gi|255521513|ref|ZP_05388750.1| NifU family protein [Listeria monocytogenes FSL J1-175] gi|290894179|ref|ZP_06557149.1| NifU family protein [Listeria monocytogenes FSL J2-071] gi|300765271|ref|ZP_07075256.1| NifU family protein [Listeria monocytogenes FSL N1-017] gi|46881843|gb|AAT05137.1| NifU family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47018635|gb|EAL09388.1| NifU family protein [Listeria monocytogenes str. 4b H7858] gi|217332769|gb|ACK38563.1| conserved domain protein [Listeria monocytogenes HCC23] gi|225877410|emb|CAS06124.1| Putative NifU family protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606971|gb|EEW19579.1| NifU family protein [Listeria monocytogenes FSL R2-503] gi|290556242|gb|EFD89786.1| NifU family protein [Listeria monocytogenes FSL J2-071] gi|293584734|gb|EFF96766.1| NifU family protein [Listeria monocytogenes HPB2262] gi|293594721|gb|EFG02482.1| NifU family protein [Listeria monocytogenes FSL J1-194] gi|300514092|gb|EFK41154.1| NifU family protein [Listeria monocytogenes FSL N1-017] gi|307571927|emb|CAR85106.1| NifU family protein [Listeria monocytogenes L99] gi|313607074|gb|EFR83599.1| nitrogen fixation protein NifU [Listeria monocytogenes FSL F2-208] gi|328471461|gb|EGF42355.1| NifU family protein [Listeria monocytogenes 220] gi|332312829|gb|EGJ25924.1| Nitrogen-fixing NifU protein [Listeria monocytogenes str. Scott A] Length = 78 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 127 NRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKD 185 + RP + RDGGD + + +DG+V + + GAC CPS+ TLK G+ L + K+ Sbjct: 14 KKFRPFLVRDGGDYELIEVTQDGVVKIKLLGACETCPSSDMTLKMGIELTLAEKIIGFKE 73 Query: 186 IRTV 189 + V Sbjct: 74 VVQV 77 >gi|328465264|gb|EGF36521.1| NifU family protein [Listeria monocytogenes 1816] Length = 82 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 127 NRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKD 185 + RP + RDGGD + + +DG+V + + GAC CPS+ TLK G+ L + +K Sbjct: 14 KKFRPFLVRDGGDYELIEVTQDGVVKIKLLGACETCPSSDMTLKMGIELTLAEKLLALKK 73 Query: 186 I 186 + Sbjct: 74 L 74 >gi|242278148|ref|YP_002990277.1| nitrogen-fixing NifU domain protein [Desulfovibrio salexigens DSM 2638] gi|242121042|gb|ACS78738.1| nitrogen-fixing NifU domain protein [Desulfovibrio salexigens DSM 2638] Length = 74 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILNH 178 +++ LD +VRP + DGG++ D GI + ++GAC GCP + TL+ + L Sbjct: 4 KVEAALD-KVRPLLQADGGNVELVEVTDKGIAKVRLQGACKGCPMSQITLRNAIERTLLK 62 Query: 179 FVPEVKDI 186 +PE+K + Sbjct: 63 EIPELKGV 70 >gi|228473254|ref|ZP_04058008.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] gi|228275156|gb|EEK13954.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] Length = 79 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANI 175 ++QR++ L +RP + DGGDI G D IV + + G+C C TLK GV Sbjct: 6 LLQRVETAL-AEIRPYLQNDGGDISLIGIEDDKIVKVKLLGSCLSCSVNQMTLKSGVEMT 64 Query: 176 LNHFVPEVKDI 186 + + PE++ + Sbjct: 65 IKKYAPEIEKV 75 >gi|260061614|ref|YP_003194694.1| hypothetical protein RB2501_08435 [Robiginitalea biformata HTCC2501] gi|88785746|gb|EAR16915.1| hypothetical protein RB2501_08435 [Robiginitalea biformata HTCC2501] Length = 79 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASETLKYG 171 + + +I+ L+ +RP + DGGDI G DG V + + GAC GC TLK G Sbjct: 2 TSEELTSKIEAALEE-IRPFLQSDGGDISLVGIEDGTRVKVRLEGACVGCTVNQMTLKSG 60 Query: 172 VANILNHFVPEVKDI 186 V + P+++ + Sbjct: 61 VEMTIKKHAPQIEQV 75 >gi|114561432|ref|YP_748945.1| putative DNA uptake protein [Shewanella frigidimarina NCIMB 400] gi|119370614|sp|Q089F8|NFUA_SHEFN RecName: Full=Fe/S biogenesis protein nfuA gi|114332725|gb|ABI70107.1| HesB/YadR/YfhF-family protein [Shewanella frigidimarina NCIMB 400] Length = 192 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +V+RI+ ++ + + P +A GG+I+ + G+ L G C+GC TLK Sbjct: 101 VSGDAPLVERIEYIIQSEINPQLASHGGNIMLVEITEAGVAVLQFGGGCNGCSQVDITLK 160 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L+ F E+ +R V Sbjct: 161 DGIEKQLLDMFPTELTGVRDV 181 >gi|83593605|ref|YP_427357.1| nitrogen-fixing NifU-like [Rhodospirillum rubrum ATCC 11170] gi|83576519|gb|ABC23070.1| Nitrogen-fixing NifU-like [Rhodospirillum rubrum ATCC 11170] Length = 99 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 S A ++ EVL+ +RP + RD GDI D +F+++ GAC GC +S TL Sbjct: 2 SQQAFEAKVAEVLETVIRPRLRRDNGDIELVRIEDHKIFVTLTGACVGCQLSSITL 57 >gi|292489916|ref|YP_003532806.1| protein gntY [Erwinia amylovora CFBP1430] gi|292900951|ref|YP_003540320.1| Fe-S protein [Erwinia amylovora ATCC 49946] gi|291200799|emb|CBJ47933.1| putative Fe-S protein [Erwinia amylovora ATCC 49946] gi|291555353|emb|CBA23723.1| Protein gntY [Erwinia amylovora CFBP1430] gi|312174100|emb|CBX82353.1| Protein gntY [Erwinia amylovora ATCC BAA-2158] Length = 191 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L ++ P +A GG + + + DG L G C+GC TLK Sbjct: 101 VSDDAPLIERVEYLLQAQINPQLASHGGKVSLMEITDDGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ + PE+K +R Sbjct: 161 EGIEKEMLAAFPELKGVR 178 >gi|311277652|ref|YP_003939883.1| IscR-regulated protein YhgI [Enterobacter cloacae SCF1] gi|308746847|gb|ADO46599.1| IscR-regulated protein YhgI [Enterobacter cloacae SCF1] Length = 191 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L +++ P +A GG + D G L G C+GC TLK Sbjct: 101 VSDDAPLMERVEYLLQSQINPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F PE+K +R Sbjct: 161 EGIEKQLLNEF-PELKGVR 178 >gi|226306139|ref|YP_002766099.1| hypothetical protein RER_26520 [Rhodococcus erythropolis PR4] gi|226185256|dbj|BAH33360.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length = 300 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V R++ LD+ VRP + GGD+ DG+V L + G+C+ CPS+S TL+ V + + Sbjct: 83 VETRVRTALDS-VRPYLGSHGGDVELIEVADGVVRLRLLGSCNSCPSSSVTLETAVQDAV 141 Query: 177 NHFVPEVKDI 186 PE I Sbjct: 142 QAAAPETTGI 151 >gi|224418982|ref|ZP_03656988.1| NifU-like protein [Helicobacter canadensis MIT 98-5491] gi|253827929|ref|ZP_04870814.1| NifU-like protein [Helicobacter canadensis MIT 98-5491] gi|313142494|ref|ZP_07804687.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|253511335|gb|EES89994.1| NifU-like protein [Helicobacter canadensis MIT 98-5491] gi|313131525|gb|EFR49142.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 326 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 8/86 (9%) Query: 101 KLDDMGSGDFIESDSAVVQRIKEV---LDNRVRPAVARDGGD---IVFKGYRDGI--VFL 152 K D GD +D +VQ+IK + +D ++RP + DGG+ I K DG V++ Sbjct: 230 KADLESKGDLKFADMTLVQKIKAIESLIDEKIRPMLMMDGGNMEIIELKNSSDGYTDVYI 289 Query: 153 SMRGACSGCPSASETLKYGVANILNH 178 GACSGC S + + + ++L Sbjct: 290 RYLGACSGCASGATGTLFAIESVLQE 315 >gi|325114501|emb|CBZ50057.1| at4g25910 protein, related [Neospora caninum Liverpool] Length = 285 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Query: 121 IKEVLDNRVRPAVARDGGDI--VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +++VL++ VRP + GG++ V + I L+ +GACSGCPSA +TL G+ L Sbjct: 64 VEQVLES-VRPYLRSHGGNVKLVELDSENRIARLAFKGACSGCPSAQQTLYEGLQGALRE 122 Query: 179 FVPEVK 184 P+++ Sbjct: 123 VWPDIR 128 >gi|289643389|ref|ZP_06475510.1| iron-sulfur cluster assembly accessory protein [Frankia symbiont of Datisca glomerata] gi|289506787|gb|EFD27765.1| iron-sulfur cluster assembly accessory protein [Frankia symbiont of Datisca glomerata] Length = 198 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 38/75 (50%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E D + R + +VRP + RDGGD+ G+V + + GAC GC +A +TL Sbjct: 120 EGDEDTLWRQVDEAIQQVRPFLQRDGGDVTVVDITAGVVSVRLTGACGGCSAALDTLTGV 179 Query: 172 VANILNHFVPEVKDI 186 + L VP V+ + Sbjct: 180 IERQLKESVPAVERV 194 >gi|296105108|ref|YP_003615254.1| putative DNA uptake protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059567|gb|ADF64305.1| putative DNA uptake protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 191 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L +++ P +A GG + D G L G C+GC TLK Sbjct: 101 VSDDAPLMERVEYLLQSQINPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F PE+K +R Sbjct: 161 EGIEKQLLNEF-PELKGVR 178 >gi|304397831|ref|ZP_07379707.1| IscR-regulated protein YhgI [Pantoea sp. aB] gi|304354542|gb|EFM18913.1| IscR-regulated protein YhgI [Pantoea sp. aB] Length = 191 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +V+R++ +L ++ P +A GG + + + DG L G C+GC TLK Sbjct: 101 VSDDAPMVERVEYLLQAQINPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMIDVTLK 160 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ L PE+K +R + Sbjct: 161 DGIEKELLAAFPELKGVRDI 180 >gi|157165751|ref|YP_001467687.1| hypothetical protein CCC13826_1742 [Campylobacter concisus 13826] gi|112800805|gb|EAT98149.1| NifU family protein [Campylobacter concisus 13826] Length = 91 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD +++ + L +V P + DGG + G ++G +++ + G C GC +++ TLKYG+ Sbjct: 5 SDEELLKPVTASL-QKVLPMLENDGGGMELLGIKNGKIYVRLTGHCHGCAASTTTLKYGI 63 Query: 173 ANIL 176 L Sbjct: 64 ERQL 67 >gi|229490939|ref|ZP_04384774.1| nitrogen-fixing NifU domain protein [Rhodococcus erythropolis SK121] gi|229322329|gb|EEN88115.1| nitrogen-fixing NifU domain protein [Rhodococcus erythropolis SK121] Length = 300 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V R++ LD+ VRP + GGD+ DG+V L + G+C+ CPS+S TL+ V + + Sbjct: 83 VETRVRTALDS-VRPYLGSHGGDVELIEVADGVVRLRLLGSCNSCPSSSVTLETAVQDAV 141 Query: 177 NHFVPEVKDI 186 PE I Sbjct: 142 QAAAPETTGI 151 >gi|312890429|ref|ZP_07749966.1| nitrogen-fixing NifU domain protein [Mucilaginibacter paludis DSM 18603] gi|311297199|gb|EFQ74331.1| nitrogen-fixing NifU domain protein [Mucilaginibacter paludis DSM 18603] Length = 92 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 ++ +++ LD +RP + DGG++ V + D +V L + G+C CP + TLK G+ Sbjct: 3 ILDQVEAALDT-IRPYLETDGGNVSVEEITADNVVKLKLLGSCGSCPMSIMTLKAGIEQA 61 Query: 176 LNHFVPEVKDIRTV 189 + VPEV + + Sbjct: 62 IKKAVPEVTGVEAI 75 >gi|238765194|ref|ZP_04626125.1| Fe/S bioproteinsis protein nfuA [Yersinia kristensenii ATCC 33638] gi|238696577|gb|EEP89363.1| Fe/S bioproteinsis protein nfuA [Yersinia kristensenii ATCC 33638] Length = 191 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLK 169 ++ ++ +++R++ VL +++ P +A GG + D + L G C+GC TLK Sbjct: 101 VDDNAPLMERVEYVLQSQINPQLAGHGGRVTLMEITPDALAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 EGIEKELLQKFPELKGVR 178 >gi|836637|emb|CAA83509.1| nifU [Nostoc sp. PCC 6720] gi|1091584|prf||2021269A dinitrogenase reductase Length = 87 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I++VLD VRP + DGGD+ IV + ++GAC C S++ TLK + + L + Sbjct: 18 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRI 77 >gi|332520071|ref|ZP_08396535.1| nitrogen-fixing NifU domain protein [Lacinutrix algicola 5H-3-7-4] gi|332044630|gb|EGI80824.1| nitrogen-fixing NifU domain protein [Lacinutrix algicola 5H-3-7-4] Length = 80 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 128 RVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +RP + DGGDI D +V + ++GAC GC TLK GV + + P+++ + Sbjct: 16 EIRPFLQSDGGDITLLSIEDDKLVKVQLQGACVGCSVNQMTLKSGVEMTIKKYAPQIEKV 75 >gi|304413450|ref|ZP_07394923.1| Fe/S biogenesis protein [Candidatus Regiella insecticola LSR1] gi|304284293|gb|EFL92686.1| Fe/S biogenesis protein [Candidatus Regiella insecticola LSR1] Length = 191 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ VL +++ P +A GG + D L G C+GC TLK Sbjct: 101 VADDAPLMERVEYVLQSKINPQLASHGGRVTLMEITDDAFAVLQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K ++ Sbjct: 161 NGIEKELLQTFPELKGVK 178 >gi|167041235|gb|ABZ05992.1| putative HesB-like domain protein [uncultured marine microorganism HF4000_001N02] Length = 189 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 Q++ +++ + PAVA GG + G + ++ G C GC A TLK GV ++ Sbjct: 108 QKVADIITQEINPAVASHGGVVELVGVDEDKAIIAFGGGCQGCGMADVTLKQGVEVMIKD 167 Query: 179 FVPEVKDI 186 VPE+ ++ Sbjct: 168 KVPEIIEV 175 >gi|163748829|ref|ZP_02156081.1| yhgI protein [Shewanella benthica KT99] gi|161331603|gb|EDQ02408.1| yhgI protein [Shewanella benthica KT99] Length = 192 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 5/81 (6%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + SD+++ +RI+ V+ + + P +A GG+I+ + +G+ L G C+GC TLK Sbjct: 101 VNSDASLNERIEYVIQSEINPQLASHGGNIMLMEVSEEGVAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVP----EVKDI 186 G+ L P VKDI Sbjct: 161 DGIEKQLLEMFPGELTGVKDI 181 >gi|116873760|ref|YP_850541.1| NifU family protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742638|emb|CAK21762.1| NifU family protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 78 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 10/86 (11%) Query: 105 MGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPS 163 M +IE D A+ + RP + RDGGD + + DGIV + + GAC CPS Sbjct: 1 MEEISYIEVDKAL---------KKFRPFLVRDGGDYELIEVTPDGIVKIKLLGACETCPS 51 Query: 164 ASETLKYGVANILNHFVPEVKDIRTV 189 + TLK G+ L + K++ V Sbjct: 52 SDMTLKMGIELTLAEKIIGFKEVVQV 77 >gi|24376092|ref|NP_720135.1| putative DNA uptake protein [Shewanella oneidensis MR-1] gi|51702012|sp|Q8E8P2|NFUA_SHEON RecName: Full=Fe/S biogenesis protein nfuA gi|24351118|gb|AAN57579.1|AE015893_8 yhgI protein [Shewanella oneidensis MR-1] Length = 192 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLK 169 + D+ +V+RI+ V+ + + P +A GG+I+ +G+ L G C+GC TLK Sbjct: 101 VAGDAPLVERIEYVIQSEINPQLASHGGNIMLVEITGEGVAVLQFGGGCNGCSQVDITLK 160 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L+ F E+ +R V Sbjct: 161 DGIEKQLLDMFPGELTGVRDV 181 >gi|254282987|ref|ZP_04957955.1| IscR-regulated protein YhgI [gamma proteobacterium NOR51-B] gi|219679190|gb|EED35539.1| IscR-regulated protein YhgI [gamma proteobacterium NOR51-B] Length = 191 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 ++ DS + RI +L N V P++A GG++ D L G C GC + TLK Sbjct: 101 VDPDSPIEDRINYILYNEVNPSLAAHGGEVSLVEVTDEKYAILRFGGGCQGCSAVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 GV L +PE+ +R Sbjct: 161 DGVEKTLVEQLPELTGVR 178 >gi|123444169|ref|YP_001008139.1| putative DNA uptake protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332163339|ref|YP_004299916.1| putative DNA uptake protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|150383451|sp|A1JSF6|NFUA_YERE8 RecName: Full=Fe/S biogenesis protein nfuA gi|122091130|emb|CAL14013.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318607833|emb|CBY29331.1| nfua Fe-S protein maturation [Yersinia enterocolitica subsp. palearctica Y11] gi|325667569|gb|ADZ44213.1| putative DNA uptake protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862994|emb|CBX73127.1| Fe/S biogenesis protein nfuA [Yersinia enterocolitica W22703] Length = 191 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLK 169 ++ ++ +++R++ VL +++ P +A GG + D + L G C+GC TLK Sbjct: 101 VDDNAPLMERVEYVLQSQINPQLAGHGGRVTLMEITPDALAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 EGIEKELLQKFPELKGVR 178 >gi|188991774|ref|YP_001903784.1| Thioredoxin-like protein [Xanthomonas campestris pv. campestris str. B100] gi|254767335|sp|B0RTH4|NFUA_XANCB RecName: Full=Fe/S biogenesis protein nfuA gi|167733534|emb|CAP51738.1| Thioredoxin-like protein [Xanthomonas campestris pv. campestris] Length = 199 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASE 166 G+ +++V+ ++ V++N + P +A GG + + +G+V L G C GC A Sbjct: 100 GEAPAESASMVECVRWVVENEINPQLASHGGRVAVQEVSAEGVVLLRFGGGCHGCGMADV 159 Query: 167 TLKYGVANILNHFVPEVKDIR 187 TLK G+ L VP V +R Sbjct: 160 TLKQGIEKTLMGRVPGVIAVR 180 >gi|326772596|ref|ZP_08231880.1| conserved hypothetical protein [Actinomyces viscosus C505] gi|326637228|gb|EGE38130.1| conserved hypothetical protein [Actinomyces viscosus C505] Length = 178 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 39/76 (51%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 D A+ +++ D + V GG +V RDG+V ++M GAC CP+A T+ Sbjct: 101 DDALEAAARQIADGSLGTFVNSHGGALVVHSVRDGVVEIAMEGACDHCPAAEITMHARFE 160 Query: 174 NILNHFVPEVKDIRTV 189 ++L P + ++R + Sbjct: 161 HLLRRRCPWLVEVRRI 176 >gi|238758685|ref|ZP_04619859.1| Fe/S bioproteinsis protein nfuA [Yersinia aldovae ATCC 35236] gi|238702982|gb|EEP95525.1| Fe/S bioproteinsis protein nfuA [Yersinia aldovae ATCC 35236] Length = 191 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLK 169 ++ ++ +++R++ VL +++ P +A GG + D + L G C+GC TLK Sbjct: 101 VDDNAPLMERVEYVLQSQINPQLAGHGGRVTLMEITPDALAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 EGIEKELLQKFPELKGVR 178 >gi|157148997|ref|YP_001456316.1| putative DNA uptake protein [Citrobacter koseri ATCC BAA-895] gi|166990520|sp|A8AQW7|NFUA_CITK8 RecName: Full=Fe/S biogenesis protein nfuA gi|157086202|gb|ABV15880.1| hypothetical protein CKO_04835 [Citrobacter koseri ATCC BAA-895] Length = 191 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L +++ P +A GG + D G L G C+GC TLK Sbjct: 101 VADDAPLMERVEYMLQSQINPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F PE+K +R Sbjct: 161 EGIEKQLLNEF-PELKGVR 178 >gi|325066683|ref|ZP_08125356.1| NifU-like protein [Actinomyces oris K20] Length = 178 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 39/76 (51%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 D A+ +++ D + V GG +V RDG+V ++M GAC CP+A T+ Sbjct: 101 DDALEAAARQIADGSLGTFVNSHGGALVVHSVRDGVVEIAMEGACDHCPAAEITMHARFE 160 Query: 174 NILNHFVPEVKDIRTV 189 ++L P + ++R + Sbjct: 161 HLLRRRCPWLVEVRRI 176 >gi|169831222|ref|YP_001717204.1| NifU domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169638066|gb|ACA59572.1| nitrogen-fixing NifU domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 43 Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 31/42 (73%), Gaps = 1/42 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSG 160 ++++EVL N+VRP + RDGGD+ +DG+V + ++GAC G Sbjct: 3 EKVEEVL-NKVRPYLQRDGGDVELVDVKDGVVHVRLKGACRG 43 >gi|88798134|ref|ZP_01113721.1| Thioredoxin-like protein [Reinekea sp. MED297] gi|88779331|gb|EAR10519.1| Thioredoxin-like protein [Reinekea sp. MED297] Length = 196 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + DS + ++ +L + P +A GGD+ + D + L G C GC + TLK Sbjct: 105 VTKDSPLPDQVNYILYTEINPGLAAHGGDVSLEELTDDNVAVLRFGGGCQGCSAVDMTLK 164 Query: 170 YGVANILNHFVPEVKDIRTV 189 GV L VP++ +R V Sbjct: 165 DGVEKTLMERVPQLAGVRDV 184 >gi|22127773|ref|NP_671196.1| putative DNA uptake protein [Yersinia pestis KIM 10] gi|45439990|ref|NP_991529.1| putative DNA uptake protein [Yersinia pestis biovar Microtus str. 91001] gi|51598063|ref|YP_072254.1| DNA uptake protein [Yersinia pseudotuberculosis IP 32953] gi|108809333|ref|YP_653249.1| putative DNA uptake protein [Yersinia pestis Antiqua] gi|108814098|ref|YP_649865.1| putative DNA uptake protein [Yersinia pestis Nepal516] gi|145597377|ref|YP_001161452.1| putative DNA uptake protein [Yersinia pestis Pestoides F] gi|150260809|ref|ZP_01917537.1| predicted gluconate transport associated protein [Yersinia pestis CA88-4125] gi|153947285|ref|YP_001402938.1| DNA uptake protein [Yersinia pseudotuberculosis IP 31758] gi|162421404|ref|YP_001608065.1| putative DNA uptake protein [Yersinia pestis Angola] gi|165928048|ref|ZP_02223880.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165936266|ref|ZP_02224835.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|166010431|ref|ZP_02231329.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166214579|ref|ZP_02240614.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167399248|ref|ZP_02304772.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419001|ref|ZP_02310754.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426539|ref|ZP_02318292.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468684|ref|ZP_02333388.1| hesB-like domain/nifU-like domain protein [Yersinia pestis FV-1] gi|170022424|ref|YP_001718929.1| putative DNA uptake protein [Yersinia pseudotuberculosis YPIII] gi|186897263|ref|YP_001874375.1| putative DNA uptake protein [Yersinia pseudotuberculosis PB1/+] gi|218927338|ref|YP_002345213.1| putative DNA uptake protein [Yersinia pestis CO92] gi|229836393|ref|ZP_04456560.1| predicted gluconate transport associated protein [Yersinia pestis Pestoides A] gi|229839982|ref|ZP_04460141.1| predicted gluconate transport associated protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842063|ref|ZP_04462218.1| predicted gluconate transport associated protein [Yersinia pestis biovar Orientalis str. India 195] gi|229904636|ref|ZP_04519747.1| predicted gluconate transport associated protein [Yersinia pestis Nepal516] gi|270488149|ref|ZP_06205223.1| IscR-regulated protein YhgI [Yersinia pestis KIM D27] gi|294502220|ref|YP_003566282.1| hypothetical protein YPZ3_0110 [Yersinia pestis Z176003] gi|51702126|sp|Q8ZJI0|NFUA_YERPE RecName: Full=Fe/S biogenesis protein nfuA gi|81638196|sp|Q664J6|NFUA_YERPS RecName: Full=Fe/S biogenesis protein nfuA gi|119370621|sp|Q1C2L8|NFUA_YERPA RecName: Full=Fe/S biogenesis protein nfuA gi|119370622|sp|Q1CCL5|NFUA_YERPN RecName: Full=Fe/S biogenesis protein nfuA gi|166990533|sp|A7FNW0|NFUA_YERP3 RecName: Full=Fe/S biogenesis protein nfuA gi|166990534|sp|A4TGR7|NFUA_YERPP RecName: Full=Fe/S biogenesis protein nfuA gi|254767339|sp|B2K5V9|NFUA_YERPB RecName: Full=Fe/S biogenesis protein nfuA gi|254767340|sp|A9R4D2|NFUA_YERPG RecName: Full=Fe/S biogenesis protein nfuA gi|254767341|sp|B1JHZ3|NFUA_YERPY RecName: Full=Fe/S biogenesis protein nfuA gi|21960901|gb|AAM87447.1|AE013995_2 hypothetical protein y3903 [Yersinia pestis KIM 10] gi|45434845|gb|AAS60406.1| Thioredoxin-like proteins and domains [Yersinia pestis biovar Microtus str. 91001] gi|51591345|emb|CAH23011.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|108777746|gb|ABG20265.1| hypothetical protein YPN_3938 [Yersinia pestis Nepal516] gi|108781246|gb|ABG15304.1| hypothetical protein YPA_3342 [Yersinia pestis Antiqua] gi|115345949|emb|CAL18813.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145209073|gb|ABP38480.1| hypothetical protein YPDSF_0054 [Yersinia pestis Pestoides F] gi|149290217|gb|EDM40294.1| predicted gluconate transport associated protein [Yersinia pestis CA88-4125] gi|152958780|gb|ABS46241.1| hesB-like domain/nifU-like domain protein [Yersinia pseudotuberculosis IP 31758] gi|162354219|gb|ABX88167.1| hesB-like domain/nifU-like domain protein [Yersinia pestis Angola] gi|165915880|gb|EDR34488.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|165919997|gb|EDR37298.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165990521|gb|EDR42822.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166204234|gb|EDR48714.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166962995|gb|EDR59016.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051752|gb|EDR63160.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054527|gb|EDR64335.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169748958|gb|ACA66476.1| IscR-regulated protein YhgI [Yersinia pseudotuberculosis YPIII] gi|186700289|gb|ACC90918.1| IscR-regulated protein YhgI [Yersinia pseudotuberculosis PB1/+] gi|229678754|gb|EEO74859.1| predicted gluconate transport associated protein [Yersinia pestis Nepal516] gi|229690373|gb|EEO82427.1| predicted gluconate transport associated protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696348|gb|EEO86395.1| predicted gluconate transport associated protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706461|gb|EEO92468.1| predicted gluconate transport associated protein [Yersinia pestis Pestoides A] gi|262360299|gb|ACY57020.1| hypothetical protein YPD4_0111 [Yersinia pestis D106004] gi|262364249|gb|ACY60806.1| hypothetical protein YPD8_0116 [Yersinia pestis D182038] gi|270336653|gb|EFA47430.1| IscR-regulated protein YhgI [Yersinia pestis KIM D27] gi|294352679|gb|ADE63020.1| hypothetical protein YPZ3_0110 [Yersinia pestis Z176003] gi|320013262|gb|ADV96833.1| putative DNA uptake protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 191 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLK 169 ++ + +++R++ VL +++ P +A GG + +G+ L G C+GC TLK Sbjct: 101 VDDSAPLMERVEYVLQSQINPQLAGHGGRVTLMEITPEGLAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 EGIEKELLQKFPELKGVR 178 >gi|227327615|ref|ZP_03831639.1| putative DNA uptake protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 191 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 ++ ++ +++R++ VL +++ P +A GG + D G+ L G C+GC TLK Sbjct: 101 VDDNAPLMERVEYVLQSQINPQLAGHGGRVTLMEITDDGLAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L P++K +R Sbjct: 161 EGIEKELLEKFPDLKGVR 178 >gi|213584942|ref|ZP_03366768.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 136 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ L +++ P +A GG + D G L G C+GC TLK Sbjct: 46 VADDAPLMERVEYALQSQINPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLK 105 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +LN F PE+K +R + Sbjct: 106 EGIEKQLLNEF-PELKGVRDL 125 >gi|308273500|emb|CBX30102.1| Nitrogen fixation protein nifU [uncultured Desulfobacterium sp.] Length = 275 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 35/63 (55%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++ I+E ++ ++PA+ +DGG+I V + +RG C+ C + TLK+ V + L Sbjct: 203 IKLIEETMEREIKPALKKDGGNIELIDVDGNTVIVELRGTCASCSKSQITLKHYVESKLR 262 Query: 178 HFV 180 V Sbjct: 263 ELV 265 >gi|289549172|ref|YP_003474160.1| nitrogen-fixing NifU domain protein [Thermocrinis albus DSM 14484] gi|289182789|gb|ADC90033.1| nitrogen-fixing NifU domain protein [Thermocrinis albus DSM 14484] Length = 268 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 32/58 (55%) Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 V+P + GGD+ +D V +S++GAC GC + TL+ + + +VP +K I Sbjct: 99 VKPYIQSHGGDVELVDVKDDTVIVSLKGACVGCAQSVFTLRQTILEAIQAYVPTIKRI 156 >gi|332141688|ref|YP_004427426.1| Fe/S biogenesis protein NfuA [Alteromonas macleodii str. 'Deep ecotype'] gi|332143387|ref|YP_004429125.1| Fe/S biogenesis protein NfuA [Alteromonas macleodii str. 'Deep ecotype'] gi|254767290|sp|B4S1U9|NFUA_ALTMD RecName: Full=Fe/S biogenesis protein nfuA gi|327551710|gb|AEA98428.1| Fe/S biogenesis protein NfuA [Alteromonas macleodii str. 'Deep ecotype'] gi|327553409|gb|AEB00128.1| Fe/S biogenesis protein NfuA [Alteromonas macleodii str. 'Deep ecotype'] Length = 192 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLK 169 + D+ +++RI ++++ + P +A GG +V DG L G C+GC TLK Sbjct: 101 VSDDAPLIERINYMIESEINPQLANHGGQVVLTELTDDGYAVLQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ +R Sbjct: 161 DGIEKQMLEQFAGELNGVR 179 >gi|283787951|ref|YP_003367816.1| competence protein [Citrobacter rodentium ICC168] gi|282951405|emb|CBG91104.1| putative competence protein [Citrobacter rodentium ICC168] Length = 191 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L +++ P +A GG + D G L G C+GC TLK Sbjct: 101 VADDAPLMERVEYMLQSQINPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F PE+K +R Sbjct: 161 EGIEKQLLNEF-PELKGVR 178 >gi|94502038|ref|ZP_01308544.1| Thioredoxin-like protein [Oceanobacter sp. RED65] gi|94425845|gb|EAT10847.1| Thioredoxin-like protein [Oceanobacter sp. RED65] Length = 192 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + DS + ++ +L N + P +A GG++ + + D + L G C GC + TLK Sbjct: 102 VNDDSPIQDQVNYILYNEINPGLASHGGEVKLVEVTEDNLAILEFGGGCQGCSAVDITLK 161 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L +P++ IR Sbjct: 162 EGIEKTLLSKLPQLSGIR 179 >gi|17228950|ref|NP_485498.1| nitrogen fixation protein [Nostoc sp. PCC 7120] gi|128316|sp|P20628|NIFU_ANASP RecName: Full=Nitrogen fixation protein nifU gi|97707|pir||D34443 nitrogen fixation protein nifU - Anabaena sp gi|142038|gb|AAA22007.1| nifU [Nostoc sp. PCC 7120] gi|17130802|dbj|BAB73412.1| nitrogen fixation protein [Nostoc sp. PCC 7120] Length = 300 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 I++VLD VRP + DGGD+ IV + ++GAC C S++ TLK + + L Sbjct: 232 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRL 287 >gi|75910119|ref|YP_324415.1| Fe-S cluster assembly protein NifU [Anabaena variabilis ATCC 29413] gi|7387938|sp|Q43885|NIFU_ANAAZ RecName: Full=Nitrogen fixation protein nifU gi|762779|gb|AAA87250.1| NifU gene product [Anabaena azollae] gi|75703844|gb|ABA23520.1| Fe-S cluster assembly protein NifU [Anabaena variabilis ATCC 29413] Length = 300 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 I++VLD VRP + DGGD+ IV + ++GAC C S++ TLK + + L Sbjct: 232 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRL 287 >gi|213161411|ref|ZP_03347121.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 131 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ L +++ P +A GG + D G L G C+GC TLK Sbjct: 41 VADDAPLMERVEYALQSQINPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLK 100 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +LN F PE+K +R + Sbjct: 101 EGIEKQLLNEF-PELKGVRDL 120 >gi|282901488|ref|ZP_06309413.1| Fe-S cluster assembly protein NifU [Cylindrospermopsis raciborskii CS-505] gi|281193767|gb|EFA68739.1| Fe-S cluster assembly protein NifU [Cylindrospermopsis raciborskii CS-505] Length = 308 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I++VLD VRP + DGGD+ V + ++GAC C S++ TLK + + L V Sbjct: 240 IQKVLDEEVRPVLIADGGDVELYDIEGNKVKVILKGACGSCSSSTATLKIAIESRLRERV 299 >gi|221194695|ref|ZP_03567752.1| conserved domain protein [Atopobium rimae ATCC 49626] gi|221185599|gb|EEE17989.1| conserved domain protein [Atopobium rimae ATCC 49626] Length = 78 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Query: 129 VRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 +R ++ DGGD+ + DG V L M G+C+GCP ++ + G+ IL VP VK ++ Sbjct: 15 IRQSLQADGGDVELIDVNDDGTVTLEMTGSCAGCPLSAYDMSEGIERILVEHVPGVKRVQ 74 >gi|284036029|ref|YP_003385959.1| nitrogen-fixing NifU domain protein [Spirosoma linguale DSM 74] gi|283815322|gb|ADB37160.1| nitrogen-fixing NifU domain protein [Spirosoma linguale DSM 74] Length = 88 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 ++ ++ +++ LD+ +RP +A DGG++ V + D V L + G+C CP ++ T K G Sbjct: 6 NNDQLISKVERALDS-MRPYLAADGGNVKVLEITEDKTVRLELVGSCGSCPMSAMTFKGG 64 Query: 172 VANILNHFVPEVKDIRTV 189 + + VPE+ + V Sbjct: 65 LEEAILKAVPEITKVEAV 82 >gi|288941129|ref|YP_003443369.1| Fe-S cluster assembly protein NifU [Allochromatium vinosum DSM 180] gi|288896501|gb|ADC62337.1| Fe-S cluster assembly protein NifU [Allochromatium vinosum DSM 180] Length = 302 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 ++RI+ VLD+ VRP + RD GD+ V++ MRGAC+GC A+ TL+ Sbjct: 218 IRRIEAVLDS-VRPTLQRDHGDVELVDVDGRQVYVKMRGACAGCQMAAVTLE 268 >gi|188535341|ref|YP_001909138.1| putative DNA uptake protein [Erwinia tasmaniensis Et1/99] gi|259910062|ref|YP_002650418.1| putative DNA uptake protein [Erwinia pyrifoliae Ep1/96] gi|254767305|sp|B2VJW0|NFUA_ERWT9 RecName: Full=Fe/S biogenesis protein nfuA gi|188030383|emb|CAO98274.1| putative membrane-bound protein GntY [Erwinia tasmaniensis Et1/99] gi|224965684|emb|CAX57216.1| putative DNA uptake protein [Erwinia pyrifoliae Ep1/96] gi|283480162|emb|CAY76078.1| Protein gntY [Erwinia pyrifoliae DSM 12163] gi|310765661|gb|ADP10611.1| putative DNA uptake protein [Erwinia sp. Ejp617] Length = 191 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L ++ P +A GG + D G L G C+GC TLK Sbjct: 101 VSDDAPLIERVEYLLQAQINPQLASHGGKVSLMEITDEGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ + PE+K +R Sbjct: 161 EGIEKEMLAAFPELKGVR 178 >gi|127511040|ref|YP_001092237.1| putative DNA uptake protein [Shewanella loihica PV-4] gi|150383448|sp|A3Q930|NFUA_SHELP RecName: Full=Fe/S biogenesis protein nfuA gi|126636335|gb|ABO21978.1| HesB/YadR/YfhF-family protein [Shewanella loihica PV-4] Length = 192 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 +++D+ + +RI+ V+ + + P +A GG+I+ + GI L G C+GC TLK Sbjct: 101 VDADAPLKERIEYVIQSEINPQLASHGGNIMLVDIDEAGIAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L+ F E+ +R V Sbjct: 161 DGIEKQLLDMFPGELTGVRDV 181 >gi|237752011|ref|ZP_04582491.1| predicted protein [Helicobacter winghamensis ATCC BAA-430] gi|229376578|gb|EEO26669.1| predicted protein [Helicobacter winghamensis ATCC BAA-430] Length = 326 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 8/86 (9%) Query: 101 KLDDMGSGDFIESDSAVVQRIKEV---LDNRVRPAVARDGGD---IVFKGYRDGI--VFL 152 K D GD ++ +VQ+IK + +D ++RP + DGG+ I K DG V++ Sbjct: 230 KADAQSQGDLKFTEMTMVQKIKAIENTIDEKIRPMLMMDGGNMEIIDLKNGSDGYTDVYI 289 Query: 153 SMRGACSGCPSASETLKYGVANILNH 178 GACSGC S++ + + ++L Sbjct: 290 RYLGACSGCASSATGTLFAIESVLQE 315 >gi|270264449|ref|ZP_06192715.1| Fe/S biogenesis protein NfuA [Serratia odorifera 4Rx13] gi|270041585|gb|EFA14683.1| Fe/S biogenesis protein NfuA [Serratia odorifera 4Rx13] Length = 191 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 ++ ++ +++R++ VL +++ P +A GG + D + L G C+GC TLK Sbjct: 101 VDDNAPLMERVEYVLQSQINPQLAGHGGRVTLMEITDDSLAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 EGIEKELLQKFPELKGVR 178 >gi|260774744|ref|ZP_05883647.1| NfuA Fe-S protein maturation [Vibrio coralliilyticus ATCC BAA-450] gi|260609306|gb|EEX35458.1| NfuA Fe-S protein maturation [Vibrio coralliilyticus ATCC BAA-450] Length = 195 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +V+R++ V+ +V P +A GG + + + DGI ++ G C+GC TLK Sbjct: 104 VSDDAPLVERVEYVIQTQVNPQLAGHGGHVNLVEITEDGIAIVAFGGGCNGCSMVDVTLK 163 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ +R Sbjct: 164 EGIEKELLQQFEGELSAVR 182 >gi|257784797|ref|YP_003180014.1| nitrogen-fixing NifU domain-containing protein [Atopobium parvulum DSM 20469] gi|257473304|gb|ACV51423.1| nitrogen-fixing NifU domain protein [Atopobium parvulum DSM 20469] Length = 78 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Query: 129 VRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 +R ++ DGGD+ + DG V L M G+C+GCP ++ + G+ IL VP VK ++ Sbjct: 15 IRQSLQTDGGDVELIDVSDDGTVTLEMVGSCAGCPMSAYDMSEGIERILIEHVPGVKRVQ 74 >gi|157372866|ref|YP_001480855.1| putative DNA uptake protein [Serratia proteamaculans 568] gi|166990528|sp|A8GKT7|NFUA_SERP5 RecName: Full=Fe/S biogenesis protein nfuA gi|157324630|gb|ABV43727.1| HesB/YadR/YfhF-family protein [Serratia proteamaculans 568] Length = 191 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 ++ ++ +++R++ VL +++ P +A GG + D + L G C+GC TLK Sbjct: 101 VDDNAPLMERVEYVLQSQINPQLAGHGGRVTLMEITDDSLAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 EGIEKELLQKFPELKGVR 178 >gi|320534511|ref|ZP_08034970.1| NifU-like domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133275|gb|EFW25764.1| NifU-like domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 178 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 40/76 (52%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 D A+ +++ D + + GG +V + RDG+V ++M G+C CP+A T+ Sbjct: 101 DDALEAAARQIADGSLGTFINSHGGALVVQSVRDGVVEIAMEGSCDHCPAAEITMHARFE 160 Query: 174 NILNHFVPEVKDIRTV 189 ++L P + ++R V Sbjct: 161 HLLRRRCPWMVEVRRV 176 >gi|237807285|ref|YP_002891725.1| putative DNA uptake protein [Tolumonas auensis DSM 9187] gi|259511747|sp|C4LA10|NFUA_TOLAT RecName: Full=Fe/S biogenesis protein nfuA gi|237499546|gb|ACQ92139.1| IscR-regulated protein YhgI [Tolumonas auensis DSM 9187] Length = 192 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 15/165 (9%) Query: 29 HFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFIS 87 HF E + R+F + PG + G + D + E R P G + Sbjct: 11 HFRKLLEKQAENTNIRVFVMNPGTPNAECGVSYCP--PDAVEPEDSRQPFDGFDAIIDPN 68 Query: 88 GDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVRPAVARDG 137 P + + D D MGS ++ ++++ +R++ VL ++V P++A G Sbjct: 69 SAPFLEEAAI-DFISDQMGSQLTLKAPNAKMRKVDDNASLAERVEYVLQSQVNPSLAAHG 127 Query: 138 GDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILNHFVP 181 G + D G+ L G C+GC TLK G+ L P Sbjct: 128 GRVTLTEITDDGVAILQFGGGCNGCSMVDVTLKEGIEKQLLELFP 172 >gi|255038680|ref|YP_003089301.1| nitrogen-fixing NifU domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254951436|gb|ACT96136.1| nitrogen-fixing NifU domain protein [Dyadobacter fermentans DSM 18053] Length = 85 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLK 169 ++S ++ I++ L+ VRP + DGGD+ F D IV L ++G+C CP ++ T + Sbjct: 1 MDSKEKTIELIEQALET-VRPYLHADGGDVKFVELTDDLIVKLELQGSCQSCPMSAMTFR 59 Query: 170 YGVANILNHFVPEVKDI 186 G+ + VP + + Sbjct: 60 AGLEESIRKAVPYINKV 76 >gi|218439087|ref|YP_002377416.1| Fe-S cluster assembly protein NifU [Cyanothece sp. PCC 7424] gi|218171815|gb|ACK70548.1| Fe-S cluster assembly protein NifU [Cyanothece sp. PCC 7424] Length = 293 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 6/66 (9%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVF---KGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 +Q I++VL+ VRP + DGG++ +G+R +V ++GAC C ++ TLK+ + + Sbjct: 222 IQLIEQVLEKEVRPILKADGGNVELYDVEGHRIKVV---LKGACGSCAGSTATLKHAIED 278 Query: 175 ILNHFV 180 L + Sbjct: 279 KLRELI 284 >gi|268326215|emb|CBH39803.1| conserved hypothetical protein, containing NifU-like domain [uncultured archaeon] Length = 87 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANI 175 +++ ++ V++ +RP + GG I +G D G+V + + GAC+GCP + TL V Sbjct: 1 MLEEVEGVIEKDIRPLLEMQGGSIELEGVDDDGVVKVRLTGACAGCPMSQFTLVNFVEAT 60 Query: 176 LNHFVPEVKDI 186 L VP VK + Sbjct: 61 LKDKVPGVKQV 71 >gi|218438784|ref|YP_002377113.1| Rieske (2Fe-2S) domain protein [Cyanothece sp. PCC 7424] gi|218171512|gb|ACK70245.1| Rieske (2Fe-2S) domain protein [Cyanothece sp. PCC 7424] Length = 309 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILN 177 +RI++ LD VRP + GD+ V + + G CS CP+++ T+K GV + Sbjct: 100 KRIQQALDE-VRPGLKSHNGDVELVAIELPDTVKVRLVGTCSNCPASTLTMKQGVEQTIK 158 Query: 178 HFVPEVKDIRTV 189 ++ PE+ + ++ Sbjct: 159 NYCPEITQVISI 170 >gi|283835809|ref|ZP_06355550.1| hypothetical protein CIT292_10204 [Citrobacter youngae ATCC 29220] gi|291067975|gb|EFE06084.1| IscR-regulated protein YhgI [Citrobacter youngae ATCC 29220] Length = 191 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L +++ P +A GG + D G L G C+GC TLK Sbjct: 101 VADDAPLMERVEYMLQSQINPQLAGHGGRVSLMEITDEGFAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 EGIEKQLLAEFPELKGVR 178 >gi|291613274|ref|YP_003523431.1| Fe-S cluster assembly protein NifU [Sideroxydans lithotrophicus ES-1] gi|291583386|gb|ADE11044.1| Fe-S cluster assembly protein NifU [Sideroxydans lithotrophicus ES-1] Length = 296 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +++I+ VL++ +RP + RDGGDI ++++M+GACSGC + TL+ I Sbjct: 215 IRKIETVLES-IRPQLKRDGGDIELVDVDGKTIYVNMKGACSGCQMEALTLQ----GIQQ 269 Query: 178 HFVPEVKD 185 + E+K+ Sbjct: 270 KLMEELKE 277 >gi|253701253|ref|YP_003022442.1| Fe-S cluster assembly protein NifU [Geobacter sp. M21] gi|251776103|gb|ACT18684.1| Fe-S cluster assembly protein NifU [Geobacter sp. M21] Length = 284 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 35/66 (53%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +Q I+E L+N +RP + DGGD+ V ++ R AC+GC S+ T K+ + Sbjct: 212 MQLIQETLENEIRPQLWADGGDLELIDIDGANVQVAFRKACAGCASSGNTAKFVEQKLRE 271 Query: 178 HFVPEV 183 P++ Sbjct: 272 MVSPDI 277 >gi|167622188|ref|YP_001672482.1| putative DNA uptake protein [Shewanella halifaxensis HAW-EB4] gi|189041729|sp|B0TNS0|NFUA_SHEHH RecName: Full=Fe/S biogenesis protein nfuA gi|167352210|gb|ABZ74823.1| HesB/YadR/YfhF-family protein [Shewanella halifaxensis HAW-EB4] Length = 192 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+++ +RI+ V+ + + P +A GG+I+ + +GI L G C+GC TLK Sbjct: 101 VSDDASLSERIEYVIQSEINPQLASHGGNIMLVEITEEGIAVLQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L F E+ ++ V Sbjct: 161 DGIEKQLLEMFPSELTGVKDV 181 >gi|51701957|sp|Q6LVQ9|NFUA_PHOPR RecName: Full=Fe/S biogenesis protein nfuA gi|46911818|emb|CAG18616.1| conserved hypothetical protein [Photobacterium profundum SS9] Length = 194 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R+ + +V P +A GG++ DG+ L G C+GC TLK Sbjct: 103 VSDDATLMERVDYAIQTQVNPQLAGHGGNVSLAEITEDGVAILQFGGGCNGCSMVDVTLK 162 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L F E+ +R V Sbjct: 163 EGIEKELLAQFAGELTGVRDV 183 >gi|16766799|ref|NP_462414.1| DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62182013|ref|YP_218430.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161616554|ref|YP_001590519.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549282|ref|ZP_02343041.1| protein GntY [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990716|ref|ZP_02571815.1| protein GntY [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232650|ref|ZP_02657708.1| protein GntY [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235106|ref|ZP_02660164.1| protein GntY [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168241653|ref|ZP_02666585.1| protein GntY [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168260762|ref|ZP_02682735.1| protein GntY [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465218|ref|ZP_02699110.1| protein GntY [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818674|ref|ZP_02830674.1| protein GntY [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445195|ref|YP_002042763.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448010|ref|YP_002047536.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472075|ref|ZP_03078059.1| protein GntY [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735692|ref|YP_002116454.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247966|ref|YP_002148435.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265281|ref|ZP_03165355.1| protein GntY [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244988|ref|YP_002217471.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387996|ref|ZP_03214608.1| protein GntY [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928851|ref|ZP_03220050.1| protein GntY [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354865|ref|YP_002228666.1| DNA uptake protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858751|ref|YP_002245402.1| DNA uptake protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213426878|ref|ZP_03359628.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|224585306|ref|YP_002639105.1| DNA uptake protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910484|ref|ZP_04654321.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289824843|ref|ZP_06544286.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|51701441|sp|Q8ZLI7|NFUA_SALTY RecName: Full=Fe/S biogenesis protein nfuA gi|75480222|sp|Q57IW3|NFUA_SALCH RecName: Full=Fe/S biogenesis protein nfuA gi|189041727|sp|A9MTT1|NFUA_SALPB RecName: Full=Fe/S biogenesis protein nfuA gi|254767317|sp|B5F8M8|NFUA_SALA4 RecName: Full=Fe/S biogenesis protein nfuA gi|254767318|sp|B5FKD2|NFUA_SALDC RecName: Full=Fe/S biogenesis protein nfuA gi|254767319|sp|B5R371|NFUA_SALEP RecName: Full=Fe/S biogenesis protein nfuA gi|254767320|sp|B5R7K3|NFUA_SALG2 RecName: Full=Fe/S biogenesis protein nfuA gi|254767321|sp|B4TKT8|NFUA_SALHS RecName: Full=Fe/S biogenesis protein nfuA gi|254767322|sp|B4SVL5|NFUA_SALNS RecName: Full=Fe/S biogenesis protein nfuA gi|254767323|sp|C0Q0I7|NFUA_SALPC RecName: Full=Fe/S biogenesis protein nfuA gi|254767325|sp|B4TY71|NFUA_SALSV RecName: Full=Fe/S biogenesis protein nfuA gi|16422070|gb|AAL22373.1| putative thioredoxin-like proteins and domain protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62129646|gb|AAX67349.1| putative Thioredoxin-like proteins and domain [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365918|gb|ABX69686.1| hypothetical protein SPAB_04370 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403858|gb|ACF64080.1| protein GntY [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406314|gb|ACF66533.1| protein GntY [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458439|gb|EDX47278.1| protein GntY [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711194|gb|ACF90415.1| protein GntY [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632440|gb|EDX50924.1| protein GntY [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197211669|gb|ACH49066.1| protein GntY [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243536|gb|EDY26156.1| protein GntY [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291455|gb|EDY30807.1| protein GntY [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939504|gb|ACH76837.1| protein GntY [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605094|gb|EDZ03639.1| protein GntY [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322284|gb|EDZ07482.1| protein GntY [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274646|emb|CAR39700.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325543|gb|EDZ13382.1| protein GntY [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330667|gb|EDZ17431.1| protein GntY [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333139|gb|EDZ19903.1| protein GntY [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338772|gb|EDZ25536.1| protein GntY [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344656|gb|EDZ31420.1| protein GntY [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350434|gb|EDZ37065.1| protein GntY [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710554|emb|CAR34912.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469834|gb|ACN47664.1| hypothetical protein SPC_3581 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248666|emb|CBG26504.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995733|gb|ACY90618.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160054|emb|CBW19573.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914535|dbj|BAJ38509.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087927|emb|CBY97689.1| Fe/S biogenesis protein nfuA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226562|gb|EFX51612.1| NfuA Fe-S protein maturation [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614115|gb|EFY11051.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618007|gb|EFY14900.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625379|gb|EFY22205.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629844|gb|EFY26617.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632267|gb|EFY29018.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636382|gb|EFY33089.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643238|gb|EFY39807.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644760|gb|EFY41296.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651215|gb|EFY47599.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654917|gb|EFY51232.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659174|gb|EFY55426.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663125|gb|EFY59329.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668611|gb|EFY64764.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674585|gb|EFY70678.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678209|gb|EFY74270.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682534|gb|EFY78555.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684247|gb|EFY80253.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716501|gb|EFZ08072.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131871|gb|ADX19301.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192198|gb|EFZ77430.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196376|gb|EFZ81528.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201823|gb|EFZ86886.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206365|gb|EFZ91326.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211958|gb|EFZ96785.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216864|gb|EGA01587.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222263|gb|EGA06646.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224278|gb|EGA08567.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228206|gb|EGA12337.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233527|gb|EGA17620.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237011|gb|EGA21078.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243774|gb|EGA27790.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245984|gb|EGA29971.1| Fe/S biogenesis protein NfuA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250760|gb|EGA34638.1| Fe/S biogenesis protein NfuA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255771|gb|EGA39521.1| Fe/S biogenesis protein NfuA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261371|gb|EGA44957.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267656|gb|EGA51138.1| Fe/S biogenesis protein NfuA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268536|gb|EGA52003.1| Fe/S biogenesis protein NfuA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625252|gb|EGE31597.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630011|gb|EGE36354.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332990363|gb|AEF09346.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 191 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ L +++ P +A GG + D G L G C+GC TLK Sbjct: 101 VADDAPLMERVEYALQSQINPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F PE+K +R Sbjct: 161 EGIEKQLLNEF-PELKGVR 178 >gi|71275227|ref|ZP_00651514.1| Nitrogen-fixing NifU, C-terminal [Xylella fastidiosa Dixon] gi|71899552|ref|ZP_00681708.1| HesB/YadR/YfhF:Nitrogen-fixing NifU, C-terminal [Xylella fastidiosa Ann-1] gi|71899937|ref|ZP_00682084.1| HesB/YadR/YfhF:Nitrogen-fixing NifU, C-terminal [Xylella fastidiosa Ann-1] gi|170731222|ref|YP_001776655.1| thioredoxin-like protein [Xylella fastidiosa M12] gi|254767338|sp|B0U5V3|NFUA_XYLFM RecName: Full=Fe/S biogenesis protein nfuA gi|71164036|gb|EAO13751.1| Nitrogen-fixing NifU, C-terminal [Xylella fastidiosa Dixon] gi|71730300|gb|EAO32384.1| HesB/YadR/YfhF:Nitrogen-fixing NifU, C-terminal [Xylella fastidiosa Ann-1] gi|71730681|gb|EAO32756.1| HesB/YadR/YfhF:Nitrogen-fixing NifU, C-terminal [Xylella fastidiosa Ann-1] gi|167966015|gb|ACA13025.1| thioredoxin-like protein [Xylella fastidiosa M12] Length = 199 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASE 166 G + +++V+R+ V++N + P +A GG + V + +G+V L G C GC A Sbjct: 100 GQELSQVASLVERVCWVVENEINPQLASHGGRVEVQEVSAEGVVLLRFGGGCHGCGMADV 159 Query: 167 TLKYGVANILNHFVPEVKDIR 187 TLK GV L V V +R Sbjct: 160 TLKQGVEKTLMERVHGVIAVR 180 >gi|242310610|ref|ZP_04809765.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239523008|gb|EEQ62874.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 326 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 8/86 (9%) Query: 101 KLDDMGSGDFIESDSAVVQRIKEV---LDNRVRPAVARDGGD---IVFKGYRDG--IVFL 152 K D GD +D +VQ+IK + +D ++RP + DGG+ I K DG V++ Sbjct: 230 KADLESKGDLKFADMTLVQKIKAIESLIDEKIRPMLMMDGGNMEIIELKNSSDGHTDVYI 289 Query: 153 SMRGACSGCPSASETLKYGVANILNH 178 GACSGC S + + + ++L Sbjct: 290 RYLGACSGCASGATGTLFAIESVLQE 315 >gi|229557969|ref|YP_128418.2| putative DNA uptake protein [Photobacterium profundum SS9] Length = 192 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R+ + +V P +A GG++ DG+ L G C+GC TLK Sbjct: 101 VSDDATLMERVDYAIQTQVNPQLAGHGGNVSLAEITEDGVAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L F E+ +R V Sbjct: 161 EGIEKELLAQFAGELTGVRDV 181 >gi|291326981|ref|ZP_06126542.2| IscR-regulated protein YhgI [Providencia rettgeri DSM 1131] gi|291312105|gb|EFE52558.1| IscR-regulated protein YhgI [Providencia rettgeri DSM 1131] Length = 194 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 16/172 (9%) Query: 29 HFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFIS 87 HF+ E + R+F I PG + G + G + + L+ L ++ + Sbjct: 13 HFAKLLENQEPGTQIRVFVINPGTPTAECGVSYCPPGAVEATDKELKFEKLSAYVDEISA 72 Query: 88 GDPIIHNGGLGDMKLDDMGSGDFIES----------DSAVVQRIKEVLDNRVRPAVARDG 137 P + + + D D +GS +++ D+ +++R++ VL +++ P +A G Sbjct: 73 --PFLDDAEI-DFVTDQLGSQLTLKAPNAKMRKVSDDAPLIERVEYVLQSQINPQLASHG 129 Query: 138 GDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGV-ANILNHFVPEVKDIR 187 G + D G L G C+GC TLK G+ +L F E+K ++ Sbjct: 130 GRVSLMEITDEGFAILQFGGGCNGCSMVDVTLKEGIEKELLKMFEGELKGVK 181 >gi|56415426|ref|YP_152501.1| DNA uptake protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364356|ref|YP_002143993.1| DNA uptake protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81361710|sp|Q5PLY6|NFUA_SALPA RecName: Full=Fe/S biogenesis protein nfuA gi|254767324|sp|B5BHG9|NFUA_SALPK RecName: Full=Fe/S biogenesis protein nfuA gi|56129683|gb|AAV79189.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095833|emb|CAR61406.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 191 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ L +++ P +A GG + D G L G C+GC TLK Sbjct: 101 VADDAPLMERVEYALQSQINPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F PE+K +R Sbjct: 161 EGIEKQLLNEF-PELKGVR 178 >gi|255024382|ref|ZP_05296368.1| NifU family protein [Listeria monocytogenes FSL J1-208] Length = 67 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 127 NRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + RP + RDGGD + + +DG+V + + GAC CPS+ TLK G+ L Sbjct: 14 KKFRPFLVRDGGDYELIEVTQDGVVKIKLLGACETCPSSDMTLKMGIELTLAE 66 >gi|16762776|ref|NP_458393.1| DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144263|ref|NP_807605.1| DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213023194|ref|ZP_03337641.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213420971|ref|ZP_03354037.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213612531|ref|ZP_03370357.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647818|ref|ZP_03377871.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|51701440|sp|Q8Z223|NFUA_SALTI RecName: Full=Fe/S biogenesis protein nfuA gi|25356753|pir||AC0997 conserved hypothetical protein STY4285 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505082|emb|CAD08103.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139900|gb|AAO71465.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 191 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ L +++ P +A GG + D G L G C+GC TLK Sbjct: 101 VADDAPLMERVEYALQSQINPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F PE+K +R Sbjct: 161 EGIEKQLLNEF-PELKGVR 178 >gi|87121388|ref|ZP_01077277.1| yhgI protein [Marinomonas sp. MED121] gi|86163231|gb|EAQ64507.1| yhgI protein [Marinomonas sp. MED121] Length = 193 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLK 169 + DS + +I VL + + P +A GG++ ++G I L G C GC + TLK Sbjct: 103 VSEDSPLEDQINYVLYSDINPGLASHGGEVSLVEIKEGNIAVLQFGGGCQGCSAVDLTLK 162 Query: 170 YGVANILNHFVPEVKDIR 187 GV L VP +K ++ Sbjct: 163 EGVEKTLIEKVPALKGVQ 180 >gi|197117955|ref|YP_002138382.1| nitrogen fixation iron-sulfur cluster assembly protein NifU [Geobacter bemidjiensis Bem] gi|197087315|gb|ACH38586.1| nitrogen fixation iron-sulfur cluster assembly protein NifU [Geobacter bemidjiensis Bem] Length = 284 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 35/66 (53%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +Q I+E L+N +RP + DGGD+ V ++ R AC+GC S+ T K+ + Sbjct: 212 MQLIQETLENEIRPQLWADGGDLELIDIDGANVQVAFRKACAGCASSGNTAKFVEQKLRE 271 Query: 178 HFVPEV 183 P++ Sbjct: 272 MVSPDI 277 >gi|1171712|sp|Q00241|NIFU_PLEBO RecName: Full=Nitrogen fixation protein nifU gi|441182|dbj|BAA00567.1| NifU protein [Leptolyngbya boryana IAM M-101] gi|228686|prf||1808318C nifU gene Length = 205 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 31/52 (59%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 I++VLD VRP + DGGD+ V ++++GAC C S++ TLK V Sbjct: 137 IQKVLDEEVRPVLIADGGDVELYDVDGDFVKVTLKGACGSCASSTATLKDAV 188 >gi|307153502|ref|YP_003888886.1| Fe-S cluster assembly protein NifU [Cyanothece sp. PCC 7822] gi|306983730|gb|ADN15611.1| Fe-S cluster assembly protein NifU [Cyanothece sp. PCC 7822] Length = 297 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +Q I+ VL+ VRP + DGG++ IV + ++GAC C ++ TLK + L Sbjct: 226 IQLIERVLEQEVRPILMADGGNVELYDLEGEIVKVVLKGACGSCAGSTATLKIAIEAKLK 285 Query: 178 HFV 180 + Sbjct: 286 ELI 288 >gi|327400610|ref|YP_004341449.1| nitrogen-fixing NifU domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316118|gb|AEA46734.1| nitrogen-fixing NifU domain-containing protein [Archaeoglobus veneficus SNP6] Length = 79 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Query: 129 VRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +RPA+ +DGG+I G+V + + GAC GCP + TL V + VPEVK + Sbjct: 17 IRPALIQDGGNIAVVDVDEESGVVKVQLLGACYGCPLSQVTLAMFVEQRIKQRVPEVKKV 76 >gi|188025400|ref|ZP_02958487.2| hypothetical protein PROSTU_00225 [Providencia stuartii ATCC 25827] gi|188023649|gb|EDU61689.1| hypothetical protein PROSTU_00225 [Providencia stuartii ATCC 25827] Length = 194 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ VL +++ P +A GG + + + DG L G C+GC TLK Sbjct: 103 VSDDAPLIERVEYVLQSQINPQLASHGGRVSLMEITDDGFAILQFGGGCNGCSMVDVTLK 162 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+K ++ Sbjct: 163 EGIEKELLKMFEGELKGVK 181 >gi|220907771|ref|YP_002483082.1| Fe-S cluster assembly protein NifU [Cyanothece sp. PCC 7425] gi|219864382|gb|ACL44721.1| Fe-S cluster assembly protein NifU [Cyanothece sp. PCC 7425] Length = 296 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 32/60 (53%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I++VL VRP + DGGD+ +V + ++GAC C S++ TLK + L V Sbjct: 225 IQQVLTEEVRPVLMADGGDVELYDVEGDVVKVLLKGACGNCSSSTATLKIAIEARLQERV 284 >gi|238754092|ref|ZP_04615450.1| Fe/S bioproteinsis protein nfuA [Yersinia ruckeri ATCC 29473] gi|238707588|gb|EEP99947.1| Fe/S bioproteinsis protein nfuA [Yersinia ruckeri ATCC 29473] Length = 191 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 ++ + +++R++ VL +++ P +A GG + D + L G C+GC TLK Sbjct: 101 VDDSAPLMERVEYVLQSQINPQLAGHGGRVTLMEITDDALAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 EGIEKELLQKFPELKGVR 178 >gi|86141694|ref|ZP_01060218.1| nifU protein-like [Leeuwenhoekiella blandensis MED217] gi|85831257|gb|EAQ49713.1| nifU protein-like [Leeuwenhoekiella blandensis MED217] Length = 80 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASETLKYG 171 +D+ + +++ L+ +RP + DGGDI DG V + + GAC GC TLK G Sbjct: 2 TDTELKGKVEAALE-EIRPFLQSDGGDIALLSIEDGTTVKVQLEGACVGCSVNQMTLKSG 60 Query: 172 VANILNHFVPEVKDI 186 V + P+++ + Sbjct: 61 VEMTIKKHAPQIERV 75 >gi|223038428|ref|ZP_03608722.1| NifU family protein [Campylobacter rectus RM3267] gi|222880285|gb|EEF15372.1| NifU family protein [Campylobacter rectus RM3267] Length = 146 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 30/51 (58%) Query: 127 NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +V P + DGG + G ++G +++ + G C GC +++ TLKYG+ L Sbjct: 75 QKVLPMLENDGGGMELLGIKNGKIYVRLTGHCHGCAASTTTLKYGIERQLR 125 >gi|118464609|ref|YP_881874.1| hypothetical protein MAV_2683 [Mycobacterium avium 104] gi|118165896|gb|ABK66793.1| conserved hypothetical protein [Mycobacterium avium 104] Length = 316 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +R+ + LD+ VRP + GGD+ V L++ G+C CPS++ TL+ V + + Sbjct: 95 RRVADALDS-VRPYLGSHGGDVHLLEIVGDTVRLALDGSCKSCPSSAVTLELTVEDAVRS 153 Query: 179 FVPEVKDIRTV 189 PE+ I V Sbjct: 154 AAPEISSIEVV 164 >gi|238751155|ref|ZP_04612650.1| Fe/S bioproteinsis protein nfuA [Yersinia rohdei ATCC 43380] gi|238710633|gb|EEQ02856.1| Fe/S bioproteinsis protein nfuA [Yersinia rohdei ATCC 43380] Length = 191 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLK 169 ++ + +++R++ VL +++ P +A GG + D + L G C+GC TLK Sbjct: 101 VDDTAPLMERVEYVLQSQINPQLAGHGGRVTLMEITPDALAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 EGIEKELLQKFPELKGVR 178 >gi|238897767|ref|YP_002923446.1| Fe/S biogenesis protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259511743|sp|C4K405|NFUA_HAMD5 RecName: Full=Fe/S biogenesis protein nfuA gi|229465524|gb|ACQ67298.1| Fe/S biogenesis protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 191 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R+ VL +++ P +A GG + D L G C+GC TLK Sbjct: 101 VADDAPLIERVDYVLQSQINPQLANHGGRVTLMEITDDAFAVLQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K ++ Sbjct: 161 EGIEKELLQQFPELKGVK 178 >gi|85060303|ref|YP_456005.1| putative DNA uptake protein [Sodalis glossinidius str. 'morsitans'] gi|119370620|sp|Q2NQH5|NFUA_SODGM RecName: Full=Fe/S biogenesis protein nfuA gi|84780823|dbj|BAE75600.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 191 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIV-FLSMRGACSGCPSASETLK 169 + ++ +++R++ +L +++ P +A GG + D ++ L G C+GC TLK Sbjct: 101 VSDEAPLIERVEYLLQSQINPQLAGHGGQVTLMEITDDMLAILQFGGGCNGCSMVDYTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 EGIEKELLEKFPELKGVR 178 >gi|332995765|gb|AEF05820.1| Fe/S biogenesis protein NfuA [Alteromonas sp. SN2] Length = 192 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 13/110 (11%) Query: 90 PIIHNGGLGDMKLDDMGS----------GDFIESDSAVVQRIKEVLDNRVRPAVARDGGD 139 P +H + D D MGS + D+ + +RI+ +++ + P +A GG Sbjct: 71 PFLHEAEI-DYVTDQMGSQLTLKAPNAKARKVADDAPLAERIRYMIEAEINPQLASHGGQ 129 Query: 140 IVFKGY-RDGIVFLSMRGACSGCPSASETLKYGV-ANILNHFVPEVKDIR 187 ++ DG L G C+GC TLK G+ +L F E+ +R Sbjct: 130 VMLAELTEDGFAILQFGGGCNGCSMVDVTLKDGIEKQMLEQFAGELNGVR 179 >gi|307108673|gb|EFN56913.1| hypothetical protein CHLNCDRAFT_144603 [Chlorella variabilis] Length = 149 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD VRP + DGG++ F +V+L + GAC CPS+ T+ G+ L Sbjct: 23 ENVETVLDE-VRPYLMADGGNVEFVEIDGPVVYLRLAGACGSCPSSLTTMTMGIKRRLME 81 Query: 179 FVP 181 +P Sbjct: 82 RIP 84 >gi|238786223|ref|ZP_04630170.1| Fe/S bioproteinsis protein nfuA [Yersinia bercovieri ATCC 43970] gi|238797310|ref|ZP_04640811.1| Fe/S bioproteinsis protein nfuA [Yersinia mollaretii ATCC 43969] gi|238712864|gb|EEQ04929.1| Fe/S bioproteinsis protein nfuA [Yersinia bercovieri ATCC 43970] gi|238718947|gb|EEQ10762.1| Fe/S bioproteinsis protein nfuA [Yersinia mollaretii ATCC 43969] Length = 191 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLK 169 ++ + +++R++ VL +++ P +A GG + D + L G C+GC TLK Sbjct: 101 VDDTAPLMERVEYVLQSQINPQLAGHGGRVTLMEITPDALAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 EGIEKELLQKFPELKGVR 178 >gi|109947989|ref|YP_665217.1| nifU-like protein [Helicobacter acinonychis str. Sheeba] gi|109715210|emb|CAK00218.1| nifU-like protein [Helicobacter acinonychis str. Sheeba] Length = 326 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 9/90 (10%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIV---FKGYRDGI-VFLSMRGACS 159 SG+ + + +VQ+IK +V+D +RP + DGGD+ K D I V++ GAC Sbjct: 237 SGELVFREMTMVQKIKAVDKVIDENIRPMLVMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFVPEVKDIRTV 189 GC SA+ + + N L + ++IR + Sbjct: 297 GCMSATTGTLFAIENALQELLD--RNIRVL 324 >gi|238792866|ref|ZP_04636496.1| Fe/S bioproteinsis protein nfuA [Yersinia intermedia ATCC 29909] gi|238727720|gb|EEQ19244.1| Fe/S bioproteinsis protein nfuA [Yersinia intermedia ATCC 29909] Length = 191 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLK 169 ++ + +++R++ VL +++ P +A GG + D + L G C+GC TLK Sbjct: 101 VDDTAPLMERVEYVLQSQINPQLAGHGGRVTLMEITPDALAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 EGIEKELLQKFPELKGVR 178 >gi|284008807|emb|CBA75563.1| gluconate metabolism protein (iron-sulphur cluster biosynthesis) [Arsenophonus nasoniae] Length = 192 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ V+ +++ P +A GG + + + DG L G C+GC TLK Sbjct: 101 VADDAPLIERVEYVIQSQINPQLAGHGGRVSLMEITDDGYAILQFGGGCNGCSMVDITLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F E+K ++ Sbjct: 161 EGIEKQLLNMFPDELKGVK 179 >gi|326336739|ref|ZP_08202907.1| NifU family protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691209|gb|EGD33180.1| NifU family protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 80 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLKYGVANI 175 +++R++ L +RP + DGGDI G D IV + + G+C C TL+ GV + Sbjct: 6 LLKRVETALA-EIRPYLQNDGGDISLVGIEDNKIVKVHLLGSCLNCSVNQMTLRSGVEMM 64 Query: 176 LNHFVPEVKDIRTV 189 + + PE++ + +V Sbjct: 65 IKKYAPEIEKVISV 78 >gi|304311311|ref|YP_003810909.1| hypothetical protein HDN1F_16740 [gamma proteobacterium HdN1] gi|301797044|emb|CBL45257.1| Conserved hypothetical protein [gamma proteobacterium HdN1] Length = 199 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETL 168 I +S+V +RI ++ + + P +A GG + + D + L G+C GC TL Sbjct: 108 IGENSSVEERINHIIFSEINPQLASHGGSVELQQLIDDDTVAILKFGGSCQGCGMIDVTL 167 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K GV L VPE+K + V Sbjct: 168 KQGVEKTLLDRVPELKRVTDV 188 >gi|237728733|ref|ZP_04559214.1| Fe/S biogenesis protein nfuA [Citrobacter sp. 30_2] gi|226909355|gb|EEH95273.1| Fe/S biogenesis protein nfuA [Citrobacter sp. 30_2] Length = 191 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L +++ P +A GG + D G L G C+GC TLK Sbjct: 101 VADDAPLMERVEYMLQSQINPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 EGIEKQLLAEFPELKGVR 178 >gi|119509287|ref|ZP_01628437.1| nitrogen fixation protein [Nodularia spumigena CCY9414] gi|119466129|gb|EAW47016.1| nitrogen fixation protein [Nodularia spumigena CCY9414] Length = 312 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 3/68 (4%) Query: 118 VQRI---KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 VQRI ++VLD VRP + DGGD+ V + ++GAC C S++ TLK + Sbjct: 236 VQRIALIQKVLDEEVRPVLIADGGDVELYDVEGDKVKVVLQGACGSCSSSTATLKIAIEA 295 Query: 175 ILNHFVPE 182 L V + Sbjct: 296 RLQDRVSK 303 >gi|300725234|ref|YP_003714562.1| Fe/S biogenesis protein [Xenorhabdus nematophila ATCC 19061] gi|297631779|emb|CBJ92498.1| Fe/S biogenesis protein [Xenorhabdus nematophila ATCC 19061] Length = 191 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 ++ D+ ++ R++ VL +++ P +A GG + D G L G C+GC TLK Sbjct: 101 VDDDAPLIDRVEYVLQSQINPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+ ++ Sbjct: 161 EGIEKQLLQVFPELTGVK 178 >gi|297568819|ref|YP_003690163.1| Fe-S cluster assembly protein NifU [Desulfurivibrio alkaliphilus AHT2] gi|296924734|gb|ADH85544.1| Fe-S cluster assembly protein NifU [Desulfurivibrio alkaliphilus AHT2] Length = 277 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++ I+E+ + +RPA+ +DGGDI V +++RGAC C + TLK V L Sbjct: 205 IKMIEELFEREIRPALRKDGGDIELVDLDGDFVTVALRGACVTCKKSKLTLKEYVEKKLR 264 Query: 178 HFV 180 V Sbjct: 265 EQV 267 >gi|218702159|ref|YP_002409788.1| putative DNA uptake protein [Escherichia coli IAI39] gi|254767298|sp|B7NMH9|NFUA_ECO7I RecName: Full=Fe/S biogenesis protein nfuA gi|218372145|emb|CAR20007.1| putative gluconate transport associated protein [Escherichia coli IAI39] Length = 191 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L +++ P +A GG + + + DG L G C+ C TLK Sbjct: 101 VADDAPLMERVEYMLQSQINPQLAGHGGRVSLMEITEDGYAILQFGGGCNSCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F PE+K +R Sbjct: 161 EGIEKQLLNEF-PELKGVR 178 >gi|72537505|gb|AAZ73682.1| hypothetical protein [Lyngbya majuscula CCAP 1446/4] Length = 289 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNH 178 RI++ L+ VRP + GD+ + V + + G CS CP+++ TLK GV + + Sbjct: 99 RIQQALEE-VRPGLKSHSGDVELVAVKLPDTVEVKLVGTCSNCPASTLTLKQGVEQAIKN 157 Query: 179 FVPEVKDIRTV 189 PE++ + +V Sbjct: 158 HCPEIQHVISV 168 >gi|306821530|ref|ZP_07455130.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550424|gb|EFM38415.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 103 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV-ANILN 177 Q+++E + + P ++ GDI K ++D IV +++ G CS CP + T + + +L Sbjct: 10 QKLEEYIKINILPYISSHKGDIKIKSFKDKIVTITLLGNCSKCPLSQITFEDVIRQKLLE 69 Query: 178 HFVPEVKDIR 187 F ++ D+R Sbjct: 70 EFPNQIDDVR 79 >gi|254429726|ref|ZP_05043433.1| HesB-like domain protein [Alcanivorax sp. DG881] gi|196195895|gb|EDX90854.1| HesB-like domain protein [Alcanivorax sp. DG881] Length = 198 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 I D+++ ++I VL + P +A GG + + + D + L G C GC TL+ Sbjct: 107 ISEDASIEEKINYVLYAEINPNLAAHGGSVQLLELTEDNVAVLEFGGGCQGCSVVDVTLR 166 Query: 170 YGVANILNHFVPEVKDIR 187 GV L +PE+ +R Sbjct: 167 DGVEKTLQERIPELAGVR 184 >gi|90412702|ref|ZP_01220703.1| hypothetical protein P3TCK_22380 [Photobacterium profundum 3TCK] gi|90326277|gb|EAS42696.1| hypothetical protein P3TCK_22380 [Photobacterium profundum 3TCK] Length = 192 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R+ + +V P +A GG++ DG+ L G C+GC TLK Sbjct: 101 VSDDATLMERVDYAIQTQVNPQLAGHGGNVSLAEITEDGVAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L F E+ +R + Sbjct: 161 EGIEKELLAQFAGELTGVRDI 181 >gi|322418923|ref|YP_004198146.1| Fe-S cluster assembly protein NifU [Geobacter sp. M18] gi|320125310|gb|ADW12870.1| Fe-S cluster assembly protein NifU [Geobacter sp. M18] Length = 286 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 31/53 (58%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 +Q I+E L+N +RP + DGGD+ V ++ R AC+GC S+ T K+ Sbjct: 214 MQLIQETLENEIRPQLWADGGDLELIDIDGSNVQVAFRKACAGCASSGNTAKF 266 >gi|16801558|ref|NP_471826.1| hypothetical protein lin2496 [Listeria innocua Clip11262] gi|16415018|emb|CAC97723.1| lin2496 [Listeria innocua Clip11262] gi|313617409|gb|EFR89807.1| YutI [Listeria innocua FSL S4-378] gi|313622571|gb|EFR92972.1| YutI [Listeria innocua FSL J1-023] Length = 78 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 127 NRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKD 185 + RP + RDGGD + + DGIV + + GAC CPS+ TLK G+ L + K+ Sbjct: 14 KKFRPFLVRDGGDYELVEVTPDGIVKIKLLGACETCPSSDMTLKMGIELTLAEKIIGFKE 73 Query: 186 IRTV 189 + V Sbjct: 74 VVQV 77 >gi|317049909|ref|YP_004117557.1| IscR-regulated protein YhgI [Pantoea sp. At-9b] gi|316951526|gb|ADU71001.1| IscR-regulated protein YhgI [Pantoea sp. At-9b] Length = 191 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +V+R++ +L ++ P +A GG + + + DG L G C+GC TLK Sbjct: 101 VSDDAPMVERVEYLLQAQINPQLAGHGGRVSLMEITDDGYAILQFGGGCNGCSMIDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 DGIEKELLAAFPELKGVR 178 >gi|71066466|ref|YP_265193.1| hypothetical protein Psyc_1911 [Psychrobacter arcticus 273-4] gi|71039451|gb|AAZ19759.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 227 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 5/79 (6%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GI---VFLSMRGACSGCPSASET 167 +D++V +RI VL + + P++A GGD+ D GI L G C GC + T Sbjct: 134 ADASVEERINYVLQSEINPSLAAHGGDVQLLELIDEEGIGLTAVLKFGGGCQGCSAVDMT 193 Query: 168 LKYGVANILNHFVPEVKDI 186 L+ GV L +PE+ + Sbjct: 194 LRQGVEVQLKQQIPELTQV 212 >gi|93007026|ref|YP_581463.1| HesB/YadR/YfhF [Psychrobacter cryohalolentis K5] gi|92394704|gb|ABE75979.1| HesB/YadR/YfhF [Psychrobacter cryohalolentis K5] Length = 257 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASET 167 +D++V +RI VL + + P++A GGD+ D L G C GC + T Sbjct: 164 ADASVEERINYVLQSEINPSLAAHGGDVQLLELIDEEGVGLTAVLKFGGGCQGCSAVDMT 223 Query: 168 LKYGVANILNHFVPEVKDI 186 L+ GV L +PE+ + Sbjct: 224 LRQGVEVQLKQQIPELTQV 242 >gi|94986710|ref|YP_594643.1| NifU homolog involved in Fe-S cluster formation [Lawsonia intracellularis PHE/MN1-00] gi|94730959|emb|CAJ54322.1| NifU homolog involved in Fe-S cluster formation [Lawsonia intracellularis PHE/MN1-00] Length = 280 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +Q+I +LD + P + DGG + +V ++MRG C+GC S TL + IL+ Sbjct: 207 MQKILHLLDEEINPVLKTDGGSVELIDVNGPLVTVAMRGNCTGCKSRQITLSQFIEKILH 266 Query: 178 HFV 180 V Sbjct: 267 EHV 269 >gi|307132919|ref|YP_003884935.1| Fe-S biogenesis protein [Dickeya dadantii 3937] gi|306530448|gb|ADN00379.1| Fe-S biogenesis protein [Dickeya dadantii 3937] Length = 191 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 D+ +++R++ VL +++ P +A GG + + + +G L G C+GC TLK G+ Sbjct: 104 DAPLMERVEYVLQSQINPQLAGHGGRVTLMEITEEGYAILQFGGGCNGCSMVDYTLKEGI 163 Query: 173 ANILNHFVPEVKDIR 187 L PE+ +R Sbjct: 164 EKELLQKFPELTGVR 178 >gi|116515272|ref|YP_802901.1| GNT I transport systemmembrane-bound protein [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285332|sp|Q056Z1|NFUA_BUCCC RecName: Full=Fe/S biogenesis protein nfuA gi|116257126|gb|ABJ90808.1| GNT I transport systemmembrane-bound protein [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 193 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVA 173 S + IK L ++ P + GG + D G+VFL G C+GC TLK G+ Sbjct: 107 SQLQNSIKNFLTTQINPKLLLHGGSVALYDITDSGVVFLKFSGGCNGCSMIDITLKKGIE 166 Query: 174 NILNHFVPEVKDIRTV 189 L PE+ + V Sbjct: 167 KKLIKNFPEISSVEDV 182 >gi|28199845|ref|NP_780159.1| hypothetical protein PD1979 [Xylella fastidiosa Temecula1] gi|182682596|ref|YP_001830756.1| HesB/YadR/YfhF-family protein [Xylella fastidiosa M23] gi|51702170|sp|Q87A52|NFUA_XYLFT RecName: Full=Fe/S biogenesis protein nfuA gi|254767337|sp|B2I9W5|NFUA_XYLF2 RecName: Full=Fe/S biogenesis protein nfuA gi|28057966|gb|AAO29808.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] gi|182632706|gb|ACB93482.1| HesB/YadR/YfhF-family protein [Xylella fastidiosa M23] gi|307578878|gb|ADN62847.1| HesB/YadR/YfhF-family protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 199 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASE 166 G + +++V+R+ V++N + P +A GG + V + +G+V L G C GC A Sbjct: 100 GQELSQVASLVERVCWVVENEINPQLASHGGRVEVQEVSAEGVVLLRFGGGCHGCGMADV 159 Query: 167 TLKYGVANILNHFVPEVKDIR 187 TLK GV L V V +R Sbjct: 160 TLKQGVEKTLMDRVHGVIAVR 180 >gi|113972131|ref|YP_735924.1| putative DNA uptake protein [Shewanella sp. MR-4] gi|117922434|ref|YP_871626.1| putative DNA uptake protein [Shewanella sp. ANA-3] gi|119370615|sp|Q0HDK0|NFUA_SHESM RecName: Full=Fe/S biogenesis protein nfuA gi|150383449|sp|A0L2F1|NFUA_SHESA RecName: Full=Fe/S biogenesis protein nfuA gi|113886815|gb|ABI40867.1| HesB/YadR/YfhF-family protein [Shewanella sp. MR-4] gi|117614766|gb|ABK50220.1| HesB/YadR/YfhF-family protein [Shewanella sp. ANA-3] Length = 192 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + SD+ + +R++ V+ + + P +A GG+I+ + ++G+ L G C+GC TLK Sbjct: 101 VASDAPLAERVEYVIQSEINPQLASHGGNIMLVEITQEGVAVLQFGGGCNGCSQVDITLK 160 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L+ F E+ + V Sbjct: 161 DGIEKQLLDMFPGELSGVSDV 181 >gi|224438068|ref|ZP_03659007.1| NifU-like protein [Helicobacter cinaedi CCUG 18818] gi|313144512|ref|ZP_07806705.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313129543|gb|EFR47160.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 324 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 9/86 (10%) Query: 101 KLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIV---FKGYRDGIVFLSM 154 K+ D G GD ++ +VQ++K +V+D +RP + DGGD+ K DG + + + Sbjct: 229 KVADKG-GDIAFAEMTMVQKVKAIDKVIDANIRPMLMMDGGDMEILDIKDTSDGFIDVYI 287 Query: 155 R--GACSGCPSASETLKYGVANILNH 178 R GACSGC S + Y + ++L Sbjct: 288 RYLGACSGCASGATGTLYAIESVLQE 313 >gi|89076068|ref|ZP_01162428.1| hypothetical protein SKA34_16610 [Photobacterium sp. SKA34] gi|89048220|gb|EAR53802.1| hypothetical protein SKA34_16610 [Photobacterium sp. SKA34] Length = 194 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R+ V+ +V P +A GG + DG+ L G C+GC TLK Sbjct: 103 VSDDATLMERVDYVIQTQVNPQLAGHGGHVSLSEITEDGVAILQFGGGCNGCSMVDVTLK 162 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L F E+ +R + Sbjct: 163 EGIEKELLAQFEGELTGVRDI 183 >gi|308188428|ref|YP_003932559.1| Protein gntY [Pantoea vagans C9-1] gi|308058938|gb|ADO11110.1| Protein gntY [Pantoea vagans C9-1] Length = 191 Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +V+R++ +L ++ P +A GG + D G L G C+GC TLK Sbjct: 101 VSDDAPMVERVEYLLQAQINPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMIDVTLK 160 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ L PE+K +R + Sbjct: 161 DGIEKELLAAFPELKGVRDI 180 >gi|298490557|ref|YP_003720734.1| Fe-S cluster assembly protein NifU ['Nostoc azollae' 0708] gi|298232475|gb|ADI63611.1| Fe-S cluster assembly protein NifU ['Nostoc azollae' 0708] Length = 306 Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 33/59 (55%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V I++VLD VRP + DGGD+ V + ++GAC C S++ TLK + + L Sbjct: 233 VALIQKVLDEEVRPVLIADGGDVELYDVEGDKVKVVLQGACGSCSSSTATLKIAIESRL 291 >gi|325105698|ref|YP_004275352.1| nitrogen-fixing NifU domain protein [Pedobacter saltans DSM 12145] gi|324974546|gb|ADY53530.1| nitrogen-fixing NifU domain protein [Pedobacter saltans DSM 12145] Length = 89 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 +ES + ++ LD +RP + DGG++ V + D +V L + GAC CP + TLK Sbjct: 1 MESRDNLFNEVERALDT-IRPYLVADGGNVSVEEITNDNVVKLKLLGACGSCPMSFMTLK 59 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ + VP + + + Sbjct: 60 AGIEQAVKKAVPSITAVEAI 79 >gi|291276862|ref|YP_003516634.1| NifU-like protein [Helicobacter mustelae 12198] gi|290964056|emb|CBG39896.1| nifU protein homolog [Helicobacter mustelae 12198] Length = 92 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 32/60 (53%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +Q+ E+ + RP + DGGDI G R V++ ++GAC GC + TLK + L Sbjct: 9 LQKPVEMSIEKTRPHLLADGGDIAILGIRGPCVYVRLKGACVGCAHSHITLKNAIERQLK 68 >gi|332703499|ref|ZP_08423587.1| nitrogen-fixing NifU domain-containing protein [Desulfovibrio africanus str. Walvis Bay] gi|332553648|gb|EGJ50692.1| nitrogen-fixing NifU domain-containing protein [Desulfovibrio africanus str. Walvis Bay] Length = 80 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGV 172 D+ + +R+ LD +RP + DGGD+ D G+V + +RGAC C + TLK G+ Sbjct: 5 DTTMRERVLAALDM-IRPVLRADGGDVELVEVTDTGVVKVRLRGACQCCTMSRMTLKNGI 63 Query: 173 ANILNHFVPEVKDIRTV 189 + +P + + +V Sbjct: 64 ERTILKEIPGLTSVESV 80 >gi|281356627|ref|ZP_06243118.1| nitrogen-fixing NifU domain protein [Victivallis vadensis ATCC BAA-548] gi|281316754|gb|EFB00777.1| nitrogen-fixing NifU domain protein [Victivallis vadensis ATCC BAA-548] Length = 76 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 2/68 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++I E L++ +R + DGGD+ V L ++GAC GCP A+ T+K G+ IL Sbjct: 4 LTKKITERLES-LRVHLQADGGDLEIVAIEGKTVKLKLQGACGGCPHAAMTIKGGLERIL 62 Query: 177 NHFV-PEV 183 + PE+ Sbjct: 63 REEIDPEI 70 >gi|34540487|ref|NP_904966.1| NifU-like protein [Porphyromonas gingivalis W83] gi|188994590|ref|YP_001928842.1| hypothetical protein PGN_0726 [Porphyromonas gingivalis ATCC 33277] gi|34396800|gb|AAQ65865.1| NifU-related protein [Porphyromonas gingivalis W83] gi|188594270|dbj|BAG33245.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC 33277] Length = 94 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 30/56 (53%) Query: 124 VLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 VL R+ P + GGD+ +D VF+ GAC CP+A ET++ V ++ + Sbjct: 9 VLRERISPLLRSHGGDLSLSQIKDKTVFVRFSGACRFCPAAHETVEKIVQAMIREY 64 >gi|291619243|ref|YP_003521985.1| YhgI [Pantoea ananatis LMG 20103] gi|291154273|gb|ADD78857.1| YhgI [Pantoea ananatis LMG 20103] gi|327395572|dbj|BAK12994.1| thioredoxin-like protein YhgI [Pantoea ananatis AJ13355] Length = 191 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +V+R++ +L ++ P +A GG + + + DG L G C+GC TLK Sbjct: 101 VSDDAPMVERVEYLLQAQINPQLAGHGGRVSLMEITDDGFAILQFGGGCNGCSMIDVTLK 160 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ L P++K +R + Sbjct: 161 DGIEKELLAAFPQLKGVRDI 180 >gi|325285793|ref|YP_004261583.1| nitrogen-fixing NifU domain-containing protein [Cellulophaga lytica DSM 7489] gi|324321247|gb|ADY28712.1| nitrogen-fixing NifU domain-containing protein [Cellulophaga lytica DSM 7489] Length = 79 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 128 RVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +RP + DGGDI D V + + GAC GC TLK GV + +VP+++++ Sbjct: 16 EIRPFLQSDGGDISLISIDNDTSVKVKLEGACVGCSVNQMTLKSGVEMTIKKYVPQIEEV 75 Query: 187 RTV 189 V Sbjct: 76 INV 78 >gi|88861082|ref|ZP_01135717.1| hypothetical protein PTD2_16836 [Pseudoalteromonas tunicata D2] gi|88817010|gb|EAR26830.1| hypothetical protein PTD2_16836 [Pseudoalteromonas tunicata D2] Length = 191 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 +++ +R++ ++D V P +A GG + + + +DGI L G C+GC TLK G+ Sbjct: 105 ASLAERVQHMIDTEVNPQLANHGGQVSLVEITKDGIAVLQFGGGCNGCSMIDVTLKEGIE 164 Query: 174 NILNHFVPEVKDIRTV 189 + E+ +R + Sbjct: 165 KEMIAKFDEITGVRDI 180 >gi|227536025|ref|ZP_03966074.1| NifU family protein [Sphingobacterium spiritivorum ATCC 33300] gi|227244138|gb|EEI94153.1| NifU family protein [Sphingobacterium spiritivorum ATCC 33300] Length = 93 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILN 177 +R+++ LD +RP + DGG++ + + +V L + GAC+ C + T K G+ + Sbjct: 5 ERVEQALDT-IRPYLETDGGNVSLEEITPENVVKLKLTGACASCSMSIMTFKAGLEQAIK 63 Query: 178 HFVPEVKDIRTV 189 VPE+ + + Sbjct: 64 KAVPEITSVEAL 75 >gi|139438470|ref|ZP_01771986.1| Hypothetical protein COLAER_00976 [Collinsella aerofaciens ATCC 25986] gi|133776009|gb|EBA39829.1| Hypothetical protein COLAER_00976 [Collinsella aerofaciens ATCC 25986] Length = 67 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 27/43 (62%) Query: 147 DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 +G+V L ++GAC+GCP +S TL G+ IL VP V + V Sbjct: 9 EGVVKLELQGACAGCPMSSLTLSMGIERILKEHVPGVTRVEQV 51 >gi|268680559|ref|YP_003304990.1| nitrogen-fixing NifU domain protein [Sulfurospirillum deleyianum DSM 6946] gi|268618590|gb|ACZ12955.1| nitrogen-fixing NifU domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 93 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 11/63 (17%) Query: 126 DNRVRPAVARDGGDI-----------VFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 D +RPAV + I G + G VF+ ++GAC GCPS+ +TLKYG+ Sbjct: 6 DEELRPAVEKSLEKIKPMLALDGGGLTLLGIKKGRVFVQLQGACQGCPSSGQTLKYGIER 65 Query: 175 ILN 177 L Sbjct: 66 QLR 68 >gi|325280703|ref|YP_004253245.1| nitrogen-fixing NifU domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324312512|gb|ADY33065.1| nitrogen-fixing NifU domain-containing protein [Odoribacter splanchnicus DSM 20712] Length = 103 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 37/68 (54%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 IES S+ +R++E++ RVRP + GGD+ + R V + GAC CP+A T++ Sbjct: 5 IESSSSFEERVREIVLYRVRPHLLEHGGDLSVREIRGRDVGIVFSGACGACPAAQITVEQ 64 Query: 171 GVANILNH 178 V L Sbjct: 65 VVEKGLRR 72 >gi|71892342|ref|YP_278076.1| membrane-bound protein in GNT I transport system [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123640816|sp|Q492A3|NFUA_BLOPB RecName: Full=Fe/S biogenesis protein nfuA gi|71796448|gb|AAZ41199.1| membrane-bound protein in GNT I transport system [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 196 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 R++ VL ++ P + GG + + + D + + G C+GC AS T+K G+ L + Sbjct: 115 RVRNVLQFQINPQLELHGGSVSLIRITEDLLAVIKFYGGCNGCAMASYTIKEGIETTLKN 174 Query: 179 FVPEVKDI 186 PE+K + Sbjct: 175 LFPELKGV 182 >gi|118602435|ref|YP_903650.1| NifU domain-containing protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|254767316|sp|A1AW72|NFUA_RUTMC RecName: Full=Fe/S biogenesis protein nfuA gi|118567374|gb|ABL02179.1| nitrogen-fixing NifU domain protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 192 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKY 170 + D+ + ++IK V+ + P +A GG + + + + V L+ G C GC S TL+ Sbjct: 103 KEDAPLEEKIKYVIAANINPGLASHGGFVELVEITKHMDVILNFGGGCQGCSSVKSTLEQ 162 Query: 171 GVANILNHFVPEVKDIRTV 189 GV L PE+K +R V Sbjct: 163 GVEAQLKMSFPEIKSVRDV 181 >gi|332970567|gb|EGK09554.1| Fe/S-biogenesis protein NfuA [Psychrobacter sp. 1501(2011)] Length = 216 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 5/79 (6%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGI---VFLSMRGACSGCPSASET 167 +D++V +RI VL + + P++A GGD+ +G+ L G C GC + T Sbjct: 123 ADASVEERINYVLQSEINPSLAAHGGDVQLLELIEEEGVGLTAVLKFGGGCQGCSAVDMT 182 Query: 168 LKYGVANILNHFVPEVKDI 186 L+ GV L +PE+ + Sbjct: 183 LRQGVEVQLKQQIPELTQV 201 >gi|222035115|emb|CAP77860.1| Protein gntY [Escherichia coli LF82] Length = 191 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ +L +++ P +A GG + + + G L G C+GC TLK Sbjct: 101 VADDAPLMERVEYMLQSQINPQLAGHGGRVSLMEITEGGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +LN F PE+K +R Sbjct: 161 EGIEKQLLNEF-PELKGVR 178 >gi|9081905|gb|AAF82636.1|AF167538_3 NifU [Trichodesmium erythraeum IMS101] Length = 291 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I++VL VRP +A DGGD+ V + ++GAC C + TLK + L V Sbjct: 223 IQQVLQQEVRPVLAEDGGDVELFDVDGDRVLVKLKGACGSCSNVLVTLKGAIEATLKERV 282 Query: 181 PE 182 E Sbjct: 283 SE 284 >gi|113477555|ref|YP_723616.1| Fe-S cluster assembly protein NifU [Trichodesmium erythraeum IMS101] gi|110168603|gb|ABG53143.1| Fe-S cluster assembly protein NifU [Trichodesmium erythraeum IMS101] Length = 291 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I++VL VRP +A DGGD+ V + ++GAC C + TLK + L V Sbjct: 223 IQQVLQQEVRPVLAEDGGDVELFDVDGDRVLVKLKGACGSCSNVLVTLKGAIEATLKERV 282 Query: 181 PE 182 E Sbjct: 283 SE 284 >gi|120403360|ref|YP_953189.1| Rieske (2Fe-2S) domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119956178|gb|ABM13183.1| Rieske (2Fe-2S) domain protein [Mycobacterium vanbaalenii PYR-1] Length = 285 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 VRP + GGD+ D + F+ + GAC+GC AS TL+ V L VP ++ + Sbjct: 102 VRPQLHSHGGDVTLVRVDDRVAFVRLEGACNGCSMASVTLRELVEAALLQGVPNLEAVEV 161 Query: 189 V 189 V Sbjct: 162 V 162 >gi|269103899|ref|ZP_06156596.1| hypothetical protein VDA_003326 [Photobacterium damselae subsp. damselae CIP 102761] gi|268163797|gb|EEZ42293.1| hypothetical protein VDA_003326 [Photobacterium damselae subsp. damselae CIP 102761] Length = 192 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R+ V+ +V P +A GG I + + DGI + G C+GC TLK Sbjct: 101 VADDAPLMERVDYVIQTQVNPQLAGHGGHISLIEITEDGIAVIQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L F E+ +R V Sbjct: 161 EGIEKELLAQFEGELNAVRDV 181 >gi|300771723|ref|ZP_07081598.1| NifU family protein [Sphingobacterium spiritivorum ATCC 33861] gi|300761712|gb|EFK58533.1| NifU family protein [Sphingobacterium spiritivorum ATCC 33861] Length = 93 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILN 177 +R+++ LD +RP + DGG++ + + +V L + GAC+ C + T K G+ + Sbjct: 5 ERVEQALDT-IRPYLETDGGNVSLEEITPENVVKLKLTGACASCSMSIMTFKAGLEQAIK 63 Query: 178 HFVPEVKDIRTV 189 VPE+ + + Sbjct: 64 KAVPEITSVEAL 75 >gi|148653644|ref|YP_001280737.1| HesB/YadR/YfhF-family protein [Psychrobacter sp. PRwf-1] gi|148572728|gb|ABQ94787.1| HesB/YadR/YfhF-family protein [Psychrobacter sp. PRwf-1] Length = 216 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 5/79 (6%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGI---VFLSMRGACSGCPSASET 167 +D++V +RI VL + + P++A GGD+ +G+ L G C GC + T Sbjct: 123 ADASVEERINYVLQSEINPSLAAHGGDVQLLELIEEEGVGLTAVLKFGGGCQGCSAVDMT 182 Query: 168 LKYGVANILNHFVPEVKDI 186 L+ GV L +PE+ + Sbjct: 183 LRQGVEVQLKQQIPELTQV 201 >gi|119484429|ref|ZP_01619046.1| hypothetical protein L8106_01887 [Lyngbya sp. PCC 8106] gi|119457903|gb|EAW39026.1| hypothetical protein L8106_01887 [Lyngbya sp. PCC 8106] Length = 289 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNH 178 RI++ L+ VRP + GD+ + V + + G CS CP+++ TLK GV + + Sbjct: 99 RIQQALE-EVRPGLKSHSGDVELVAIKLPDTVEVKLVGTCSNCPASTLTLKQGVEQAIKN 157 Query: 179 FVPEVKDIRTV 189 PE+ + +V Sbjct: 158 HCPEINHVISV 168 >gi|320539835|ref|ZP_08039494.1| putative iron-sulfur cluster scaffold protein [Serratia symbiotica str. Tucson] gi|320030021|gb|EFW12041.1| putative iron-sulfur cluster scaffold protein [Serratia symbiotica str. Tucson] Length = 191 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 ++ ++ +++R++ +L +++ P +A GG + D + L G C+GC TLK Sbjct: 101 VDDNAPLIERVEYLLQSQINPQLAGHGGRVTLMEITDDNLAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 EGIEKELLLKFPELKGVR 178 >gi|251793451|ref|YP_003008180.1| putative DNA uptake protein [Aggregatibacter aphrophilus NJ8700] gi|247534847|gb|ACS98093.1| IscR-regulated protein YhgI [Aggregatibacter aphrophilus NJ8700] Length = 194 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ V+ ++ P +A GG I + + DG L G C+GC TLK Sbjct: 103 VADDAPLIERVEYVIQTQINPQLASHGGKITLLEITDDGYAILQFGGGCNGCSMVDVTLK 162 Query: 170 YGVANILNHFVP-EVKDIRTV 189 GV L P E+K R V Sbjct: 163 DGVEKQLISLFPNELKGARDV 183 >gi|254507293|ref|ZP_05119429.1| IscR-regulated protein YhgI [Vibrio parahaemolyticus 16] gi|219549753|gb|EED26742.1| IscR-regulated protein YhgI [Vibrio parahaemolyticus 16] Length = 195 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +V+R++ V+ +V P +A GG + + + +GI ++ G C+GC TLK Sbjct: 104 VSDDAPLVERVEYVIQTQVNPQLAGHGGHVNLVEITEEGIAIVAFGGGCNGCSMVDVTLK 163 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ +R Sbjct: 164 EGIEKELLQQFEGELTAVR 182 >gi|118468815|ref|YP_887052.1| iron-sulfur cluster-binding protein, Rieske family protein [Mycobacterium smegmatis str. MC2 155] gi|118170102|gb|ABK70998.1| iron-sulfur cluster-binding protein, Rieske family protein, putative [Mycobacterium smegmatis str. MC2 155] Length = 307 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 5/77 (6%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDI----VFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 V +RI + LD RVRP + GGD+ V + L G+C CPS++ TL+ + Sbjct: 99 VHRRIADALD-RVRPYLGSHGGDVRLLDVVPEADGAVARLRFSGSCKSCPSSAATLELAI 157 Query: 173 ANILNHFVPEVKDIRTV 189 ++ + PEV I V Sbjct: 158 SDAVLAAAPEVSSIEVV 174 >gi|85858912|ref|YP_461114.1| iscU protein [Syntrophus aciditrophicus SB] gi|85722003|gb|ABC76946.1| iscU protein [Syntrophus aciditrophicus SB] Length = 274 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++ I++VL+ +RP++ DGGD+ V ++ RGAC+ C ++ +TLK V L Sbjct: 201 IRMIEDVLEKEIRPSLKNDGGDVELIDVVGNRVLVATRGACAVCRASQQTLKGFVEFKLR 260 Query: 178 HFV-PEV 183 V PE+ Sbjct: 261 ELVTPEL 267 >gi|229524698|ref|ZP_04414103.1| NfuA Fe-S protein maturation [Vibrio cholerae bv. albensis VL426] gi|229338279|gb|EEO03296.1| NfuA Fe-S protein maturation [Vibrio cholerae bv. albensis VL426] Length = 195 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+++++R++ L +V P +A GG + + DG+ + G C+GC TLK Sbjct: 104 VSDDASLIERVEYALQTQVNPQLAGHGGHVRLISISDDGVALVQFGGGCNGCSMVDVTLK 163 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ +R Sbjct: 164 EGIEKELLAQFAGELTAVR 182 >gi|305666181|ref|YP_003862468.1| Nitrogen-fixing NifU-like protein [Maribacter sp. HTCC2170] gi|88707679|gb|EAQ99920.1| Nitrogen-fixing NifU-like protein [Maribacter sp. HTCC2170] Length = 79 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 128 RVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +RP + DGGDI D V + ++GAC GC TLK GV + + P+++++ Sbjct: 16 EIRPFLQSDGGDIELVSIDNDSSVKVKLQGACVGCSVNQMTLKSGVEMTIKKYAPQIEEV 75 >gi|71031895|ref|XP_765589.1| hypothetical protein [Theileria parva strain Muguga] gi|68352546|gb|EAN33306.1| hypothetical protein TP01_0062 [Theileria parva] Length = 150 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + +++VLD +RP ++ DGG I D V + G+C GCP S TLK + N L Sbjct: 73 TKNVEDVLD-LIRPQLSSDGGGISLCKIVDNEVHVKFTGSCVGCPYRSTTLKELIENNLV 131 Query: 178 HFV 180 F+ Sbjct: 132 KFI 134 >gi|4140376|gb|AAD03815.1| NifU [Trichodesmium erythraeum IMS101] Length = 179 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I++VL VRP +A DGGD+ V + ++GAC C + TLK + L V Sbjct: 111 IQQVLQQEVRPVLAEDGGDVELFDVDGDRVLVKLKGACGSCSNVLVTLKGAIEATLKERV 170 Query: 181 PE 182 E Sbjct: 171 SE 172 >gi|297583815|ref|YP_003699595.1| Scaffold protein Nfu/NifU [Bacillus selenitireducens MLS10] gi|297142272|gb|ADH99029.1| Scaffold protein Nfu/NifU [Bacillus selenitireducens MLS10] Length = 89 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 3/77 (3%) Query: 3 IQTEDTPNPATLKFIPGQVVLV-EGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 ++ E TPNP +KF QV+ G+ F +E + + LA + S+ G+ +++ DF+ Sbjct: 5 VRGEPTPNPNAMKFTANQVLFEGSGSASFKKGQETDHA-LAKELLSLDGVDNIFGFQDFV 63 Query: 62 TVGKDQ-YDWEHLRPPV 77 TV K+ +W+ L P + Sbjct: 64 TVNKEPGAEWDDLLPKI 80 >gi|90581403|ref|ZP_01237198.1| hypothetical protein VAS14_21772 [Vibrio angustum S14] gi|90437380|gb|EAS62576.1| hypothetical protein VAS14_21772 [Vibrio angustum S14] Length = 192 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R+ V+ +V P +A GG + DG+ L G C+GC TLK Sbjct: 101 VSDDAPLMERVDYVIQTQVNPQLAGHGGHVSLSEITEDGVAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L F E+ +R + Sbjct: 161 EGIEKELLAQFEGELTGVRDI 181 >gi|186680943|ref|YP_001864139.1| Fe-S cluster assembly protein NifU [Nostoc punctiforme PCC 73102] gi|186463395|gb|ACC79196.1| Fe-S cluster assembly protein NifU [Nostoc punctiforme PCC 73102] Length = 299 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I++VLD VRP + DGGD+ V + ++GAC C S++ TLK + L V Sbjct: 231 IQKVLDEEVRPVLIADGGDVELYDVEGDRVKVVLQGACGSCSSSTATLKIAIEARLQDRV 290 Query: 181 PE 182 + Sbjct: 291 SK 292 >gi|300867915|ref|ZP_07112555.1| Fe-S cluster assembly protein NifU [Oscillatoria sp. PCC 6506] gi|300334052|emb|CBN57731.1| Fe-S cluster assembly protein NifU [Oscillatoria sp. PCC 6506] Length = 298 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + I++VL+ VRP + DGGD+ IV + ++GAC CPS++ TLK + L Sbjct: 228 ISLIQKVLE-EVRPLLIADGGDVELYDVEGDIVKVLLKGACGSCPSSTSTLKGLIETTLK 286 Query: 178 HFV 180 V Sbjct: 287 EKV 289 >gi|157736864|ref|YP_001489547.1| NifU-like protein [Arcobacter butzleri RM4018] gi|157698718|gb|ABV66878.1| NifU-like protein [Arcobacter butzleri RM4018] Length = 326 Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 7/75 (9%) Query: 113 SDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI----VFLSMRGACSGCPSAS 165 S+ +VQRIK VLD +RP + DGG++ ++ + +++ G+CSGC S S Sbjct: 243 SEMTLVQRIKAIDSVLDEDIRPMLVMDGGNMEIIDIKENLPHYDLYIRYLGSCSGCASGS 302 Query: 166 ETLKYGVANILNHFV 180 Y + +IL + Sbjct: 303 TGTLYAIESILQQKI 317 >gi|325576565|ref|ZP_08147283.1| Fe/S-biogenesis protein NfuA [Haemophilus parainfluenzae ATCC 33392] gi|325161128|gb|EGC73243.1| Fe/S-biogenesis protein NfuA [Haemophilus parainfluenzae ATCC 33392] Length = 194 Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ V+ ++ P +A GG I + DG L G C+GC TLK Sbjct: 103 VADDAPLIERVEYVIQTQINPQLASHGGKITLIEITDDGYAVLQFGGGCNGCSMVDVTLK 162 Query: 170 YGVANILNHFVP-EVKDIRTV 189 GV L P E+K R V Sbjct: 163 DGVEKQLVSLFPNELKGARDV 183 >gi|157373320|ref|YP_001471920.1| putative DNA uptake protein [Shewanella sediminis HAW-EB3] gi|189041731|sp|A8FPL9|NFUA_SHESH RecName: Full=Fe/S biogenesis protein nfuA gi|157315694|gb|ABV34792.1| HesB/YadR/YfhF-family protein [Shewanella sediminis HAW-EB3] Length = 192 Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + SD+ + +RI V+ + + P +A GG+I+ + +G L G C+GC TLK Sbjct: 101 VASDAPLSERIDYVIQSEINPQLASHGGNIMLVEVTEEGTAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L F E+ ++ V Sbjct: 161 DGIETQLLEKFPGELTGVKDV 181 >gi|228475998|ref|ZP_04060706.1| conserved virulence factor C [Staphylococcus hominis SK119] gi|314936427|ref|ZP_07843774.1| scaffold protein Nfu/NifU N [Staphylococcus hominis subsp. hominis C80] gi|228269821|gb|EEK11301.1| conserved virulence factor C [Staphylococcus hominis SK119] gi|313655046|gb|EFS18791.1| scaffold protein Nfu/NifU N [Staphylococcus hominis subsp. hominis C80] Length = 82 Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 2/73 (2%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 EDTPN T+K + + +++A++ + +R+F I G+ SV++ DFI+V K Sbjct: 7 EDTPNYNTIKINLSEKRKDNQSNTYTSAQDGQ-PDFINRLFDIEGVKSVFYVMDFISVDK 65 Query: 66 DQY-DWEHLRPPV 77 ++Y +W+ L P + Sbjct: 66 EEYANWDDLVPKI 78 >gi|21674600|ref|NP_662665.1| NifU protein, putative [Chlorobium tepidum TLS] gi|21647799|gb|AAM73007.1| nifU protein, putative [Chlorobium tepidum TLS] Length = 83 Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASET 167 D++ + ++ L+ VRP + DGGD G +D +V + + GAC CP ++ T Sbjct: 3 DYLPKTDPLYDKVISALET-VRPYLQVDGGDCQLVGITKDMVVDVKLLGACGSCPMSTLT 61 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 L+ GV + PE+ + +V Sbjct: 62 LRAGVEQAIKKANPEIVRVESV 83 >gi|315636035|ref|ZP_07891294.1| NifU family protein [Arcobacter butzleri JV22] gi|315479691|gb|EFU70365.1| NifU family protein [Arcobacter butzleri JV22] Length = 326 Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 7/75 (9%) Query: 113 SDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI----VFLSMRGACSGCPSAS 165 S+ +VQRIK VLD +RP + DGG++ ++ + +++ G+CSGC S S Sbjct: 243 SEMTLVQRIKAIDSVLDEDIRPMLVMDGGNMEIIDIKENLPHYDLYIRYLGSCSGCASGS 302 Query: 166 ETLKYGVANILNHFV 180 Y + +IL + Sbjct: 303 TGTLYAIESILQQKI 317 >gi|78358118|ref|YP_389567.1| Fe-S cluster assembly protein NifU [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220523|gb|ABB39872.1| Fe-S cluster assembly protein NifU [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 280 Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%) Query: 118 VQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 VQR++ + L+ +RP++ +DGGDI V +++RG C+ CPS+ TL V Sbjct: 205 VQRMQLVVKTLEEDIRPSLQKDGGDIELVDIDGKEVKVALRGMCTHCPSSQLTLTNFVQR 264 Query: 175 IL-NHFVPEV 183 L H P++ Sbjct: 265 TLREHVEPDI 274 >gi|149193836|ref|ZP_01870934.1| NifU family protein [Caminibacter mediatlanticus TB-2] gi|149135789|gb|EDM24267.1| NifU family protein [Caminibacter mediatlanticus TB-2] Length = 321 Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDG----IVFLSMRGACSGCPSASETLKYGVA 173 ++ I+E LD +++P +A DGG + R+G VF+ GACS C S TL Sbjct: 246 IKAIEEFLDTKIKPMLAMDGGSLELIDIREGDGVTTVFVRYLGACSTCASGDMTLMAIEE 305 Query: 174 NILNHF 179 + HF Sbjct: 306 EMKKHF 311 >gi|315304549|ref|ZP_07874802.1| nitrogen fixation protein NifU [Listeria ivanovii FSL F6-596] gi|313627083|gb|EFR95963.1| nitrogen fixation protein NifU [Listeria ivanovii FSL F6-596] Length = 78 Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 127 NRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKD 185 + RP + RDGGD + + DG V + + GAC CPS+ TLK G+ L+ + K+ Sbjct: 14 KKFRPFLVRDGGDYELVEVTPDGTVKIKLLGACETCPSSDMTLKMGIELTLSEKIIGFKE 73 Query: 186 IRTV 189 + V Sbjct: 74 VVQV 77 >gi|163787250|ref|ZP_02181697.1| NifU-like protein [Flavobacteriales bacterium ALC-1] gi|159877138|gb|EDP71195.1| NifU-like protein [Flavobacteriales bacterium ALC-1] Length = 79 Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +++ LD +RP + DGGDI D V + + GAC+ C TLK GV + + Sbjct: 10 VEKALD-EIRPFLQSDGGDIALLSIEDDKFVKVQLEGACTSCSVNQMTLKSGVEMTIKKY 68 Query: 180 VPEVKDIRTV 189 P+++ + V Sbjct: 69 APQIEKVINV 78 >gi|110834051|ref|YP_692910.1| hypothetical protein ABO_1190 [Alcanivorax borkumensis SK2] gi|110647162|emb|CAL16638.1| yhgI conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 198 Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 I D+ + ++I VL + P +A GG + + + D + L G C GC TL+ Sbjct: 107 ISEDATIEEKINYVLYAEINPNLAAHGGSVQLLELTDDNVAVLEFGGGCQGCSVVDVTLR 166 Query: 170 YGVANILNHFVPEVKDIR 187 GV L +PE+ +R Sbjct: 167 DGVEKTLQERIPELAGVR 184 >gi|262375821|ref|ZP_06069053.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] gi|262309424|gb|EEY90555.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] Length = 212 Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 5/75 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D++V +RI VL + + P +A GG+ ++ L G C GC + TL Sbjct: 120 DASVEERITYVLQSEINPGLAGHGGNCALVEVKEDPEKGLTAVLKFGGGCQGCSAIDITL 179 Query: 169 KYGVANILNHFVPEV 183 K GV L VPE+ Sbjct: 180 KQGVETTLKQHVPEL 194 >gi|315586217|gb|ADU40598.1| NifU family protein [Helicobacter pylori 35A] Length = 326 Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 7/85 (8%) Query: 103 DDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIV---FKGYRDGI-VFLSMR 155 D SG+ + +VQ+IK +V+D +RP + DGGD+ K D I V++ Sbjct: 233 DKSQSGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDDYIDVYIRYM 292 Query: 156 GACSGCPSASETLKYGVANILNHFV 180 GAC GC SA+ + + N L + Sbjct: 293 GACDGCMSATTGTLFAIENALQELL 317 >gi|261837669|gb|ACX97435.1| NifU scaffold protein [Helicobacter pylori 51] Length = 326 Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 7/85 (8%) Query: 103 DDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIV---FKGYRDGI-VFLSMR 155 D SG+ + +VQ+IK +V+D +RP + DGGD+ K D I V++ Sbjct: 233 DKSQSGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDDYIDVYIRYM 292 Query: 156 GACSGCPSASETLKYGVANILNHFV 180 GAC GC SA+ + + N L + Sbjct: 293 GACDGCMSATTGTLFAIENALQELL 317 >gi|50084252|ref|YP_045762.1| putative membrane-bound protein in GNT I transport system (GntY) [Acinetobacter sp. ADP1] gi|51701945|sp|Q6FDB8|NFUA_ACIAD RecName: Full=Fe/S biogenesis protein nfuA gi|49530228|emb|CAG67940.1| putative membrane-bound protein in GNT I transport system (GntY) [Acinetobacter sp. ADP1] Length = 212 Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 5/78 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D+++ +RI +L + + P +A GG+ +D L G C GC + TL Sbjct: 120 DASIEERITYILQSEINPGLAGHGGNCALVEVQDDPENGLTAVLKFGGGCQGCSAIDVTL 179 Query: 169 KYGVANILNHFVPEVKDI 186 K GV L +PE++ + Sbjct: 180 KQGVETTLRQQIPELQRV 197 >gi|301058680|ref|ZP_07199681.1| Fe-S cluster assembly protein NifU [delta proteobacterium NaphS2] gi|300447244|gb|EFK11008.1| Fe-S cluster assembly protein NifU [delta proteobacterium NaphS2] Length = 274 Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust. Identities = 19/68 (27%), Positives = 38/68 (55%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 S+ +++I+E + N + P++ +DGG++ V + M+G+C+ C ++ +TLK V Sbjct: 196 SNMQKIKKIEETIANEISPSLKQDGGNVELVDVVGNRVLVKMQGSCAVCKASQQTLKNFV 255 Query: 173 ANILNHFV 180 L V Sbjct: 256 EAKLREMV 263 >gi|323497032|ref|ZP_08102055.1| Fe/S biogenesis protein NfuA [Vibrio sinaloensis DSM 21326] gi|323317876|gb|EGA70864.1| Fe/S biogenesis protein NfuA [Vibrio sinaloensis DSM 21326] Length = 195 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 40/177 (22%), Positives = 75/177 (42%), Gaps = 26/177 (14%) Query: 29 HFSNAKEAEISPLASRIFSI-PGIASVYFGYDF-----ITVGKDQYDWEHLRPPVLGMIM 82 HF+N + R+F + PG + G + I + +EH V + + Sbjct: 14 HFANLLSQQPEGTNIRVFVVNPGTQNAECGVSYCPPEAIESTDTELTYEHFSAYVDELSL 73 Query: 83 EHFISGDPIIHNGGLGDMKLDDMGSGDFIES----------DSAVVQRIKEVLDNRVRPA 132 P + + + D D MGS +++ D+ +++R++ V+ +V P Sbjct: 74 -------PFLEDAEI-DFVTDKMGSQLTLKAPNAKMRKVSDDAPLLERVEYVIQTQVNPQ 125 Query: 133 VARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGV-ANILNHFVPEVKDIR 187 +A GG + + + G+ +S G C+GC TLK G+ +L F E+ +R Sbjct: 126 LAGHGGHVNLVEITEQGVAIVSFGGGCNGCSMVDVTLKEGIEKELLQQFEGELTAVR 182 >gi|330447159|ref|ZP_08310809.1| iron-sulfur cluster scaffold protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491350|dbj|GAA05306.1| iron-sulfur cluster scaffold protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 192 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R+ V+ +V P +A GG + DG+ L G C+GC TLK Sbjct: 101 VADDAPLMERVDYVIQTQVNPQLAGHGGHVSLSEITEDGVAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L F E+ +R + Sbjct: 161 EGIEKELLAQFEGELTGVRDI 181 >gi|308807973|ref|XP_003081297.1| nitrogen fixation NifU-like family protein (ISS) [Ostreococcus tauri] gi|116059759|emb|CAL55466.1| nitrogen fixation NifU-like family protein (ISS) [Ostreococcus tauri] Length = 186 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Query: 109 DFIES-DSAVVQRIKEVLD---NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSA 164 D +ES D+ ++ E +D + VRP + DGG++ DG++ + + GAC C S+ Sbjct: 26 DAVESADAPTLELTMENVDAALDEVRPYLIADGGNVELVTIDDGMIVVRLNGACGTCASS 85 Query: 165 SETLKYGVANILNH 178 + T+K G+ +L Sbjct: 86 TATMKGGIEKLLKQ 99 >gi|145350853|ref|XP_001419810.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580042|gb|ABO98103.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 73 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++ + E LD VRP + DGG++ I+ + + GAC C S+S T+K G+ +L Sbjct: 2 MENVDEALD-EVRPYLVADGGNVELVKIEGKIIVVRLNGACGTCASSSATMKGGIEKLLK 60 Query: 178 H----FVPEVKDI 186 V EV D+ Sbjct: 61 QKFGDAVEEVVDV 73 >gi|116753461|ref|YP_842579.1| NifU domain-containing protein [Methanosaeta thermophila PT] gi|116664912|gb|ABK13939.1| nitrogen-fixing NifU domain protein [Methanosaeta thermophila PT] Length = 75 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 3/75 (4%) Query: 118 VQRIKEVLDN---RVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 +Q +KE +++ +R + +GGD+ DG+V++ + G+C+GCP + TL+ V Sbjct: 1 MQSMKEEVESTLESIRNVLRIEGGDVELVDINDGVVYVKLTGSCAGCPFSQMTLRNFVER 60 Query: 175 ILNHFVPEVKDIRTV 189 L V VK + +V Sbjct: 61 ELKKNVSGVKAVESV 75 >gi|317153414|ref|YP_004121462.1| Fe-S cluster assembly protein NifU [Desulfovibrio aespoeensis Aspo-2] gi|316943665|gb|ADU62716.1| Fe-S cluster assembly protein NifU [Desulfovibrio aespoeensis Aspo-2] Length = 283 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 118 VQR---IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 +QR I+ V+DN +RP + DGGDI V + G CS CPS+ TL+ + Sbjct: 209 IQRMHLIESVIDNEIRPMLQADGGDIRLVDIDRQTVVVKFIGMCSNCPSSHLTLQNVIEA 268 Query: 175 ILNHFV-PEVK 184 L V PE++ Sbjct: 269 KLKEKVDPEIR 279 >gi|120434494|ref|YP_956868.1| NifU-like/thioredoxin-like protein [Gramella forsetii KT0803] gi|117576644|emb|CAL65113.1| protein containing NifU-like domain / thioredoxin-like protein [Gramella forsetii KT0803] Length = 80 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 129 VRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +RP + DGG+I D +V + + GAC GC TLK GV + +VP+++ + Sbjct: 17 IRPFLESDGGNISLVSIEDDRLVKVQLEGACVGCTVNQMTLKSGVEMTIKKYVPQIEKV 75 >gi|301155452|emb|CBW14918.1| predicted gluconate transport associated protein [Haemophilus parainfluenzae T3T1] Length = 194 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ V+ ++ P +A GG I + DG L G C+GC TLK Sbjct: 103 VADDAPLIERVEYVIQTQINPQLASHGGKITLIEITDDGYAVLQFGGGCNGCSMVDVTLK 162 Query: 170 YGVANILNHFVP-EVKDIRTV 189 GV L P E+K R V Sbjct: 163 DGVEKQLVALFPNELKGARDV 183 >gi|268680769|ref|YP_003305200.1| nitrogen-fixing NifU domain protein [Sulfurospirillum deleyianum DSM 6946] gi|268618800|gb|ACZ13165.1| nitrogen-fixing NifU domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 329 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETLKYGVA 173 Q+I+ V+D +RP + DGG++ ++G V++ GACSGC S+S + + Sbjct: 254 QQIEAVIDENIRPMLVMDGGNLEILDIKEGDDKVTDVYIRYLGACSGCASSSTGTLFAIE 313 Query: 174 NILNHFVPEVKDIR 187 ++L + K+IR Sbjct: 314 SVLQEKLS--KNIR 325 >gi|329945551|ref|ZP_08293288.1| NifU-like protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328528731|gb|EGF55683.1| NifU-like protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 170 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 137 GGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 GG +V + RDG+V ++M GAC CP+A T+ ++L P + ++R + Sbjct: 116 GGALVVRSVRDGVVEVAMEGACDECPAAEITMHARFEHLLRRRCPWLVEVRRI 168 >gi|147674569|ref|YP_001218208.1| putative DNA uptake protein [Vibrio cholerae O395] gi|262170037|ref|ZP_06037726.1| NfuA Fe-S protein maturation [Vibrio cholerae RC27] gi|172047529|sp|A5F4R9|NFUA_VIBC3 RecName: Full=Fe/S biogenesis protein nfuA gi|146316452|gb|ABQ20991.1| conserved hypothetical protein [Vibrio cholerae O395] gi|227014606|gb|ACP10816.1| conserved hypothetical protein [Vibrio cholerae O395] gi|262021445|gb|EEY40157.1| NfuA Fe-S protein maturation [Vibrio cholerae RC27] Length = 195 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+++++R++ L +V P +A GG + + DG+ + G C+GC TLK Sbjct: 104 VSDDASLMERVEYALQTQVNPQLAGHGGHVRLISISDDGVALVQFGGGCNGCSMVDVTLK 163 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ +R Sbjct: 164 EGIEKELLAQFAGELTAVR 182 >gi|332673064|gb|AEE69881.1| NifU family protein [Helicobacter pylori 83] Length = 326 Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 7/85 (8%) Query: 103 DDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIV---FKGYRDGI-VFLSMR 155 D SG+ + +VQ+IK +V+D +RP + DGGD+ K D I V++ Sbjct: 233 DKSQSGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDDYIDVYIRYM 292 Query: 156 GACSGCPSASETLKYGVANILNHFV 180 GAC GC SA+ + + N L + Sbjct: 293 GACDGCMSATTGTLFAIENALQELL 317 >gi|157164931|ref|YP_001466051.1| acetolactate synthase small subunit [Campylobacter concisus 13826] gi|112801226|gb|EAT98570.1| NifU family protein [Campylobacter concisus 13826] Length = 330 Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 13/126 (10%) Query: 65 KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEV 124 KD Y + LR M E + N L D+ + M + ++ I+ + Sbjct: 208 KDYYLVDILRDTRAEMEQERLEAQANAQANNTLSDVSFESM-------TMVGQLKAIESI 260 Query: 125 LDNRVRPAVARDGGDIVFKGYRDGI-----VFLSMRGACSGCPSASETLKYGVANILNH- 178 +D +RP + DGG++ R+ V++ GACSGC S S Y + N+L Sbjct: 261 IDKEIRPMLMMDGGNLEILDIRNDNGENIDVYIRYLGACSGCSSGSTGTLYAIENVLQES 320 Query: 179 FVPEVK 184 P+++ Sbjct: 321 LSPKIR 326 >gi|323494586|ref|ZP_08099690.1| Fe/S biogenesis protein NfuA [Vibrio brasiliensis LMG 20546] gi|323311189|gb|EGA64349.1| Fe/S biogenesis protein NfuA [Vibrio brasiliensis LMG 20546] Length = 195 Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +V+R++ V+ +V P +A GG + + + +G+ ++ G C+GC TLK Sbjct: 104 VSDDAPLVERVEYVIQTQVNPQLAGHGGHVNLVEITEEGVAIVAFGGGCNGCSMVDVTLK 163 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ +R Sbjct: 164 EGIEKELLQQFEGELSAVR 182 >gi|169796823|ref|YP_001714616.1| putative membrane-bound protein in GNT I transport system (GntY) [Acinetobacter baumannii AYE] gi|184157261|ref|YP_001845600.1| thioredoxin-like protein [Acinetobacter baumannii ACICU] gi|213156785|ref|YP_002318446.1| IscR-regulated protein YhgI [Acinetobacter baumannii AB0057] gi|215484301|ref|YP_002326528.1| Iron-sulphur cluster biosynthesis family protein [Acinetobacter baumannii AB307-0294] gi|239502990|ref|ZP_04662300.1| Iron-sulphur cluster biosynthesis family protein [Acinetobacter baumannii AB900] gi|260555913|ref|ZP_05828133.1| iron-sulphur cluster biosynthesis family protein [Acinetobacter baumannii ATCC 19606] gi|301346712|ref|ZP_07227453.1| Iron-sulphur cluster biosynthesis family protein [Acinetobacter baumannii AB056] gi|301511819|ref|ZP_07237056.1| Iron-sulphur cluster biosynthesis family protein [Acinetobacter baumannii AB058] gi|301594411|ref|ZP_07239419.1| Iron-sulphur cluster biosynthesis family protein [Acinetobacter baumannii AB059] gi|332853697|ref|ZP_08434927.1| IscR-regulated protein YhgI [Acinetobacter baumannii 6013150] gi|332870876|ref|ZP_08439521.1| IscR-regulated protein YhgI [Acinetobacter baumannii 6013113] gi|332872882|ref|ZP_08440846.1| IscR-regulated protein YhgI [Acinetobacter baumannii 6014059] gi|254767282|sp|B7GXX8|NFUA_ACIB3 RecName: Full=Fe/S biogenesis protein nfuA gi|254767283|sp|B7I8Q3|NFUA_ACIB5 RecName: Full=Fe/S biogenesis protein nfuA gi|254767284|sp|B2HVD2|NFUA_ACIBC RecName: Full=Fe/S biogenesis protein nfuA gi|254767286|sp|B0V9L0|NFUA_ACIBY RecName: Full=Fe/S biogenesis protein nfuA gi|254767504|sp|A3M3B7|NFUA_ACIBT RecName: Full=Fe/S biogenesis protein nfuA gi|169149750|emb|CAM87641.1| putative membrane-bound protein in GNT I transport system (GntY) [Acinetobacter baumannii AYE] gi|183208855|gb|ACC56253.1| Thioredoxin-like protein [Acinetobacter baumannii ACICU] gi|193076708|gb|ABO11411.2| putative membrane-bound protein in GNT I transport system (GntY) [Acinetobacter baumannii ATCC 17978] gi|213055945|gb|ACJ40847.1| IscR-regulated protein YhgI [Acinetobacter baumannii AB0057] gi|213988281|gb|ACJ58580.1| Iron-sulphur cluster biosynthesis family protein [Acinetobacter baumannii AB307-0294] gi|260410824|gb|EEX04122.1| iron-sulphur cluster biosynthesis family protein [Acinetobacter baumannii ATCC 19606] gi|322507146|gb|ADX02600.1| thioredoxin-like protein [Acinetobacter baumannii 1656-2] gi|323517125|gb|ADX91506.1| thioredoxin-like protein [Acinetobacter baumannii TCDC-AB0715] gi|332728521|gb|EGJ59895.1| IscR-regulated protein YhgI [Acinetobacter baumannii 6013150] gi|332731977|gb|EGJ63255.1| IscR-regulated protein YhgI [Acinetobacter baumannii 6013113] gi|332738893|gb|EGJ69756.1| IscR-regulated protein YhgI [Acinetobacter baumannii 6014059] Length = 212 Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D+++ +RI VL + P +A GG+ +D L G C GC + TL Sbjct: 120 DASIEERITYVLQAEINPGLAGHGGNCSLVEVQDDPEHGLTAVLKFGGGCQGCSAIDVTL 179 Query: 169 KYGVANILNHFVPEVKDI 186 K GV L +PE++ + Sbjct: 180 KQGVETTLKEHIPELQRV 197 >gi|262368793|ref|ZP_06062122.1| IscR-regulated protein YhgI [Acinetobacter johnsonii SH046] gi|262316471|gb|EEY97509.1| IscR-regulated protein YhgI [Acinetobacter johnsonii SH046] Length = 215 Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 5/78 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDI----VFKGYRDGIV-FLSMRGACSGCPSASETL 168 D+++ +RI +L + + P +A GG+ V + G+ L G C GC + TL Sbjct: 123 DASIEERITYILQSEINPGLAGHGGNCALVEVVEDEEHGLTAVLKFGGGCQGCSAIDVTL 182 Query: 169 KYGVANILNHFVPEVKDI 186 K GV L +PE++ + Sbjct: 183 KQGVETTLQQHIPELRRV 200 >gi|15642714|ref|NP_232347.1| putative DNA uptake protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586599|ref|ZP_01676384.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121726724|ref|ZP_01679949.1| conserved hypothetical protein [Vibrio cholerae V52] gi|153212573|ref|ZP_01948320.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|153802209|ref|ZP_01956795.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|153817452|ref|ZP_01970119.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153821287|ref|ZP_01973954.1| conserved hypothetical protein [Vibrio cholerae B33] gi|153825505|ref|ZP_01978172.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|153828374|ref|ZP_01981041.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|227082834|ref|YP_002811385.1| hypothetical protein VCM66_2640 [Vibrio cholerae M66-2] gi|229507232|ref|ZP_04396737.1| NfuA Fe-S protein maturation [Vibrio cholerae BX 330286] gi|229509847|ref|ZP_04399328.1| NfuA Fe-S protein maturation [Vibrio cholerae B33] gi|229513648|ref|ZP_04403112.1| NfuA Fe-S protein maturation [Vibrio cholerae TMA 21] gi|229516968|ref|ZP_04406414.1| NfuA Fe-S protein maturation [Vibrio cholerae RC9] gi|229521794|ref|ZP_04411212.1| NfuA Fe-S protein maturation [Vibrio cholerae TM 11079-80] gi|229527354|ref|ZP_04416746.1| NfuA Fe-S protein maturation [Vibrio cholerae 12129(1)] gi|229606738|ref|YP_002877386.1| DNA uptake protein [Vibrio cholerae MJ-1236] gi|254225442|ref|ZP_04919053.1| conserved hypothetical protein [Vibrio cholerae V51] gi|254285915|ref|ZP_04960877.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|254851257|ref|ZP_05240607.1| DNA uptake protein [Vibrio cholerae MO10] gi|255744321|ref|ZP_05418273.1| protein gntY [Vibrio cholera CIRS 101] gi|261211283|ref|ZP_05925572.1| protein gntY [Vibrio sp. RC341] gi|262158569|ref|ZP_06029684.1| protein gntY [Vibrio cholerae INDRE 91/1] gi|262190721|ref|ZP_06048951.1| protein gntY [Vibrio cholerae CT 5369-93] gi|297581560|ref|ZP_06943483.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|298500465|ref|ZP_07010269.1| IscR-regulated protein YhgI [Vibrio cholerae MAK 757] gi|51702195|sp|Q9KNL2|NFUA_VIBCH RecName: Full=Fe/S biogenesis protein nfuA gi|254767333|sp|C3LSE7|NFUA_VIBCM RecName: Full=Fe/S biogenesis protein nfuA gi|9657318|gb|AAF95860.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549158|gb|EAX59191.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121630885|gb|EAX63267.1| conserved hypothetical protein [Vibrio cholerae V52] gi|124116444|gb|EAY35264.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124122283|gb|EAY41026.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|125622076|gb|EAZ50399.1| conserved hypothetical protein [Vibrio cholerae V51] gi|126512038|gb|EAZ74632.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126521219|gb|EAZ78442.1| conserved hypothetical protein [Vibrio cholerae B33] gi|148876204|gb|EDL74339.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|149740790|gb|EDM54881.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|150424097|gb|EDN16036.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|227010722|gb|ACP06934.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|229334986|gb|EEO00471.1| NfuA Fe-S protein maturation [Vibrio cholerae 12129(1)] gi|229341388|gb|EEO06392.1| NfuA Fe-S protein maturation [Vibrio cholerae TM 11079-80] gi|229346031|gb|EEO11003.1| NfuA Fe-S protein maturation [Vibrio cholerae RC9] gi|229349525|gb|EEO14481.1| NfuA Fe-S protein maturation [Vibrio cholerae TMA 21] gi|229353321|gb|EEO18260.1| NfuA Fe-S protein maturation [Vibrio cholerae B33] gi|229354737|gb|EEO19658.1| NfuA Fe-S protein maturation [Vibrio cholerae BX 330286] gi|229369393|gb|ACQ59816.1| NfuA Fe-S protein maturation [Vibrio cholerae MJ-1236] gi|254846962|gb|EET25376.1| DNA uptake protein [Vibrio cholerae MO10] gi|255737846|gb|EET93239.1| protein gntY [Vibrio cholera CIRS 101] gi|260839784|gb|EEX66395.1| protein gntY [Vibrio sp. RC341] gi|262029730|gb|EEY48379.1| protein gntY [Vibrio cholerae INDRE 91/1] gi|262033398|gb|EEY51906.1| protein gntY [Vibrio cholerae CT 5369-93] gi|297534398|gb|EFH73236.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297540634|gb|EFH76691.1| IscR-regulated protein YhgI [Vibrio cholerae MAK 757] Length = 195 Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+++++R++ L +V P +A GG + + DG+ + G C+GC TLK Sbjct: 104 VSDDASLMERVEYALQTQVNPQLAGHGGHVRLISISDDGVALVQFGGGCNGCSMVDVTLK 163 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ +R Sbjct: 164 EGIEKELLAQFAGELTAVR 182 >gi|327402917|ref|YP_004343755.1| nitrogen-fixing NifU domain-containing protein [Fluviicola taffensis DSM 16823] gi|327318425|gb|AEA42917.1| nitrogen-fixing NifU domain-containing protein [Fluviicola taffensis DSM 16823] Length = 81 Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 127 NRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKD 185 N +RP + DGGD+ D GIV + + GACS C + T+K G+ + PE+ Sbjct: 17 NELRPHLVADGGDMELVDITDEGIVQVRLLGACSDCSMSMMTIKAGLEEAVKRVAPEIIA 76 Query: 186 IRTV 189 + V Sbjct: 77 VEAV 80 >gi|312882897|ref|ZP_07742629.1| putative DNA uptake protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309369416|gb|EFP96936.1| putative DNA uptake protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 195 Score = 43.1 bits (100), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ + +V P +A GG++ + + +G+ ++ G C+GC TLK Sbjct: 104 VNDDAPLIERVEYAIQTQVNPQLASHGGNVNLIEITEEGVAIVAFGGGCNGCSMVDVTLK 163 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ +R Sbjct: 164 EGIEKELLQQFEGELTAVR 182 >gi|262279919|ref|ZP_06057704.1| IscR-regulated protein YhgI [Acinetobacter calcoaceticus RUH2202] gi|262260270|gb|EEY79003.1| IscR-regulated protein YhgI [Acinetobacter calcoaceticus RUH2202] Length = 212 Score = 43.1 bits (100), Expect = 0.017, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D+++ +RI +L + P +A GG+ +D L G C GC + TL Sbjct: 120 DASIEERITYILQAEINPGLAGHGGNCSLVEVQDNPEHGLTAVLKFGGGCQGCSAIDVTL 179 Query: 169 KYGVANILNHFVPEVKDI 186 K GV L +PE++ + Sbjct: 180 KQGVETTLREHIPELQRV 197 >gi|51702196|sp|Q9PAB5|NFUA_XYLFA RecName: Full=Fe/S biogenesis protein nfuA Length = 199 Score = 43.1 bits (100), Expect = 0.017, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASE 166 G + +++V+R+ V++N + P +A GG + V + +G+V L G C GC Sbjct: 100 GQELSQVASLVERVCWVVENEINPQLASHGGRVEVQEVSAEGVVLLRFGGGCHGCGMVDV 159 Query: 167 TLKYGVANILNHFVPEVKDIR 187 TLK GV L V V +R Sbjct: 160 TLKQGVEKTLMERVHGVIAVR 180 >gi|15839192|ref|NP_299880.1| hypothetical protein XF2603 [Xylella fastidiosa 9a5c] gi|9107825|gb|AAF85400.1|AE004067_7 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 176 Score = 43.1 bits (100), Expect = 0.017, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASE 166 G + +++V+R+ V++N + P +A GG + V + +G+V L G C GC Sbjct: 77 GQELSQVASLVERVCWVVENEINPQLASHGGRVEVQEVSAEGVVLLRFGGGCHGCGMVDV 136 Query: 167 TLKYGVANILNHFVPEVKDIR 187 TLK GV L V V +R Sbjct: 137 TLKQGVEKTLMERVHGVIAVR 157 >gi|75765061|ref|ZP_00744362.1| PBS lyase HEAT-like repeat [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74487453|gb|EAO51368.1| PBS lyase HEAT-like repeat [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 169 Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHLRPPV 77 + +YDW+ L P V Sbjct: 67 NAKYDWKVLLPQV 79 >gi|299822027|ref|ZP_07053914.1| NifU domain protein [Listeria grayi DSM 20601] gi|299816655|gb|EFI83892.1| NifU domain protein [Listeria grayi DSM 20601] Length = 79 Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 127 NRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + RP +ARDGGD + +DG V + + GAC C S+ TLK G+ L Sbjct: 15 QKFRPYLARDGGDYELIDVTKDGTVKIKLLGACESCASSEITLKVGLETTL 65 >gi|260551205|ref|ZP_05825408.1| iron-sulphur cluster biosynthesis family protein [Acinetobacter sp. RUH2624] gi|260405810|gb|EEW99299.1| iron-sulphur cluster biosynthesis family protein [Acinetobacter sp. RUH2624] Length = 212 Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D+++ +RI VL + P +A GG+ +D L G C GC + TL Sbjct: 120 DASIEERITYVLQAEINPGLAGHGGNCSLVEVQDDPEHGLTAVLKFGGGCQGCSAIDVTL 179 Query: 169 KYGVANILNHFVPEVKDI 186 K GV L +PE++ + Sbjct: 180 KQGVETTLREHIPELQRV 197 >gi|126641029|ref|YP_001084013.1| putative membrane-bound protein in GNT I transport system (GntY) [Acinetobacter baumannii ATCC 17978] Length = 156 Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D+++ +RI VL + P +A GG+ +D L G C GC + TL Sbjct: 64 DASIEERITYVLQAEINPGLAGHGGNCSLVEVQDDPEHGLTAVLKFGGGCQGCSAIDVTL 123 Query: 169 KYGVANILNHFVPEVKDI 186 K GV L +PE++ + Sbjct: 124 KQGVETTLKEHIPELQRV 141 >gi|67921275|ref|ZP_00514794.1| Nitrogen-fixing NifU, C-terminal:Rieske [2Fe-2S] region [Crocosphaera watsonii WH 8501] gi|67857392|gb|EAM52632.1| Nitrogen-fixing NifU, C-terminal:Rieske [2Fe-2S] region [Crocosphaera watsonii WH 8501] Length = 286 Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILN 177 +RI++ L++ VRP + GD+ + V + + G CS CP+++ T+K GV + Sbjct: 95 KRIEQALES-VRPGLKSHHGDVELVAIKLPDTVEVQLVGTCSNCPASTLTMKQGVEQAIK 153 Query: 178 HFVPEVKDIRTV 189 + PE+ + +V Sbjct: 154 TYCPEITKVISV 165 >gi|91214967|ref|ZP_01251939.1| nifU-like domain protein [Psychroflexus torquis ATCC 700755] gi|91186572|gb|EAS72943.1| nifU-like domain protein [Psychroflexus torquis ATCC 700755] Length = 87 Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANIL 176 +++ E+ + +RP + DGGDI D +V + + G C C TLK GV + Sbjct: 7 LRKTVEIALDEIRPFLKSDGGDIELLSIEDDSLVKVQLLGTCVDCTVNQMTLKSGVEMTI 66 Query: 177 NHFVPEVKDIRTV 189 + P++K++ V Sbjct: 67 KKYAPQIKEVINV 79 >gi|21672789|ref|NP_660856.1| hypothetical protein BUsg525 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091672|sp|Q8K934|NFUA_BUCAP RecName: Full=Fe/S biogenesis protein nfuA gi|21623438|gb|AAM68067.1| hypothetical 21.0 kDa protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 192 Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 S++ +RI+ L+N + P ++ GG + + + ++ + G C+GC TLK V Sbjct: 106 SSLKERIENFLNNNINPQLSMHGGKVHLIQISQNNTALIKFTGGCNGCSMIGTTLKEIVE 165 Query: 174 NILNHFVPEVKDI 186 + F PE+K + Sbjct: 166 KKILSFFPEIKKV 178 >gi|317050896|ref|YP_004112012.1| nitrogen-fixing NifU domain-containing protein [Desulfurispirillum indicum S5] gi|316945980|gb|ADU65456.1| nitrogen-fixing NifU domain protein [Desulfurispirillum indicum S5] Length = 321 Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDG----IVFLSMRGACSGCPSASETLKYGVA 173 ++ I E L V+P +ARDGG + ++G +VF+ GAC+GC S++ + Sbjct: 246 IKAIDEALTAHVKPMLARDGGSVELVDIKEGDNEILVFIQYSGACAGCASSNTGTLQAIL 305 Query: 174 NILNHFVPE 182 IL + E Sbjct: 306 GILREKLDE 314 >gi|308061573|gb|ADO03461.1| nifU-like protein [Helicobacter pylori Cuz20] Length = 326 Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 7/81 (8%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIV---FKGYRDGI-VFLSMRGACS 159 SG+ + +VQ+IK +V+D +RP + DGGD+ K D I V++ GAC Sbjct: 237 SGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFV 180 GC SA+ + + N L + Sbjct: 297 GCMSATTGTLFAIENALQELL 317 >gi|300718787|ref|YP_003743590.1| Fe/S biogenesis protein [Erwinia billingiae Eb661] gi|299064623|emb|CAX61743.1| Fe/S biogenesis protein [Erwinia billingiae Eb661] Length = 191 Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 ++ ++ +++R++ L + P +A GG + + + DG L G C+GC TLK Sbjct: 101 VDDNAPLIERVEYQLQATINPQLASHGGKVSLMEITDDGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGVANILNHFVPEVKDIR 187 G+ L PE+K +R Sbjct: 161 EGIEKELLVAFPELKGVR 178 >gi|317181531|dbj|BAJ59315.1| nifU-like protein [Helicobacter pylori F57] Length = 326 Score = 42.7 bits (99), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 7/81 (8%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIV---FKGYRDGI-VFLSMRGACS 159 SG+ + +VQ+IK +V+D +RP + DGGD+ K D I V++ GAC Sbjct: 237 SGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFV 180 GC SA+ + + N L + Sbjct: 297 GCMSATTGTLFAIENALQELL 317 >gi|297379446|gb|ADI34333.1| Nitrogen fixation protein nifU [Helicobacter pylori v225d] Length = 326 Score = 42.7 bits (99), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 7/81 (8%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIV---FKGYRDGI-VFLSMRGACS 159 SG+ + +VQ+IK +V+D +RP + DGGD+ K D I V++ GAC Sbjct: 237 SGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFV 180 GC SA+ + + N L + Sbjct: 297 GCMSATTGTLFAIENALQELL 317 >gi|219113897|ref|XP_002176135.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217402927|gb|EEC42886.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 77 Score = 42.7 bits (99), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +VLD VRP + DGG++ + V+L + GAC C S++ T++ G+ +L Sbjct: 5 VDKVLD-EVRPYLISDGGNVSVESVDADSQTVYLKLEGACGSCSSSTVTMQMGIERVLKE 63 Query: 179 FVPEVKDIRTV 189 P ++++ V Sbjct: 64 KYPNLREVLQV 74 >gi|15644849|ref|NP_207019.1| nifU-like protein [Helicobacter pylori 26695] gi|2313312|gb|AAD07289.1| nifU-like protein [Helicobacter pylori 26695] Length = 326 Score = 42.7 bits (99), Expect = 0.022, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 7/81 (8%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIV---FKGYRDGI-VFLSMRGACS 159 SG+ + +VQ+IK +V+D +RP + DGGD+ K D I V++ GAC Sbjct: 237 SGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFV 180 GC SA+ + + N L + Sbjct: 297 GCMSATTGTLFAIENALQELL 317 >gi|308063082|gb|ADO04969.1| nifU-like protein [Helicobacter pylori Sat464] Length = 326 Score = 42.7 bits (99), Expect = 0.022, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 7/81 (8%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIV---FKGYRDGI-VFLSMRGACS 159 SG+ + +VQ+IK +V+D +RP + DGGD+ K D I V++ GAC Sbjct: 237 SGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFV 180 GC SA+ + + N L + Sbjct: 297 GCMSATTGTLFAIENALQELL 317 >gi|254778929|ref|YP_003057034.1| [Fe-S] cluster scaffold protein [Helicobacter pylori B38] gi|254000840|emb|CAX28770.1| [Fe-S] cluster scaffold protein [Helicobacter pylori B38] Length = 326 Score = 42.7 bits (99), Expect = 0.022, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 7/81 (8%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIV---FKGYRDGI-VFLSMRGACS 159 SG+ + +VQ+IK +V+D +RP + DGGD+ K D I V++ GAC Sbjct: 237 SGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFV 180 GC SA+ + + N L + Sbjct: 297 GCMSATTGTLFAIENALQELL 317 >gi|323450669|gb|EGB06549.1| hypothetical protein AURANDRAFT_9527 [Aureococcus anophagefferens] Length = 69 Score = 42.7 bits (99), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 3/63 (4%) Query: 118 VQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGI-VFLSMRGACSGCPSASETLKYGVANI 175 ++ + +VLD +VRP + DGG++ V D V L + GAC CPS+++T+K G+ + Sbjct: 4 LENVDKVLD-QVRPYLVADGGNVAVVSADPDSKDVILHLEGACGSCPSSTQTMKMGIERV 62 Query: 176 LNH 178 L Sbjct: 63 LRE 65 >gi|255319128|ref|ZP_05360346.1| IscR-regulated protein YhgI [Acinetobacter radioresistens SK82] gi|262379260|ref|ZP_06072416.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] gi|255303774|gb|EET82973.1| IscR-regulated protein YhgI [Acinetobacter radioresistens SK82] gi|262298717|gb|EEY86630.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] Length = 212 Score = 42.7 bits (99), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDI----VFKGYRDGIV-FLSMRGACSGCPSASETL 168 D+++ +RI VL + + P +A GG+ V + G+ L G C GC + TL Sbjct: 120 DASIEERITYVLQSEINPGLAGHGGNCALVEVVEDEEHGLTAVLKFGGGCQGCSAIDVTL 179 Query: 169 KYGVANILNHFVPEVKDI 186 K GV L +PE+ + Sbjct: 180 KQGVETTLKQHIPELSRV 197 >gi|78222211|ref|YP_383958.1| Fe-S cluster assembly protein NifU [Geobacter metallireducens GS-15] gi|78193466|gb|ABB31233.1| Fe-S cluster assembly protein NifU [Geobacter metallireducens GS-15] Length = 286 Score = 42.7 bits (99), Expect = 0.023, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 30/53 (56%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 +Q I+E L+ +RP + DGGD+ V ++ R AC+GC S+ T K+ Sbjct: 214 MQLIQETLEKEIRPLLWADGGDLELVDISGSEVQIAFRKACAGCASSGNTAKF 266 >gi|327485189|gb|AEA79596.1| NfuA Fe-S protein maturation [Vibrio cholerae LMA3894-4] Length = 195 Score = 42.7 bits (99), Expect = 0.023, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ L +V P +A GG + D G+ + G C+GC TLK Sbjct: 104 VSDDAPLMERVEYALQTQVNPQLAGHGGHVSLISISDDGVALVQFGGGCNGCSMVDVTLK 163 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ +R Sbjct: 164 EGIEKELLAQFAGELTAVR 182 >gi|261250552|ref|ZP_05943127.1| hypothetical protein VIA_000571 [Vibrio orientalis CIP 102891] gi|260939121|gb|EEX95108.1| hypothetical protein VIA_000571 [Vibrio orientalis CIP 102891] Length = 195 Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +V+R++ V+ +V P +A GG + + + G+ ++ G C+GC TLK Sbjct: 104 VSDDAPLVERVEYVIQTQVNPQLAGHGGHVNLVEITEQGVAIVAFGGGCNGCSMVDVTLK 163 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ +R Sbjct: 164 EGIEKELLQQFEGELSAVR 182 >gi|229017494|ref|ZP_04174395.1| hypothetical protein bcere0030_20470 [Bacillus cereus AH1273] gi|229023708|ref|ZP_04180200.1| hypothetical protein bcere0029_20430 [Bacillus cereus AH1272] gi|228737633|gb|EEL88137.1| hypothetical protein bcere0029_20430 [Bacillus cereus AH1272] gi|228743818|gb|EEL93919.1| hypothetical protein bcere0030_20470 [Bacillus cereus AH1273] Length = 375 Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust. Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 1/98 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKL 102 + +YDW+ L V + E + G++K+ Sbjct: 67 NAKYDWKVLLQQVRAVFGEEIVEESAEQQLSHFGEVKV 104 >gi|149190638|ref|ZP_01868906.1| predicted gluconate transport associated protein [Vibrio shilonii AK1] gi|148835521|gb|EDL52490.1| predicted gluconate transport associated protein [Vibrio shilonii AK1] Length = 207 Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ + +V P +A GG + + + DGI + G C+GC TLK Sbjct: 116 VADDAPLMERVEYAIQTQVNPQLAGHGGHVSLMEITEDGIAIVQFGGGCNGCSMVDVTLK 175 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ +R Sbjct: 176 EGIEKQLLQEFSGELTAVR 194 >gi|152991603|ref|YP_001357324.1| hypothetical protein SUN_0006 [Sulfurovum sp. NBC37-1] gi|151423464|dbj|BAF70967.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 324 Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 7/72 (9%) Query: 114 DSAVVQRIKEV---LDNRVRPAVARDGGDIVFKGYRDG----IVFLSMRGACSGCPSASE 166 D +VQ+IK V +D +R + DGGD+ +D +++ GAC+GC SAS Sbjct: 242 DMTIVQKIKAVDKTVDENIRQMLIMDGGDMEILDIKDNGENIDIYIRYLGACNGCASAST 301 Query: 167 TLKYGVANILNH 178 + + NIL Sbjct: 302 GTLFAIENILKE 313 >gi|145630391|ref|ZP_01786172.1| predicted gluconate transport-associated protein [Haemophilus influenzae R3021] gi|260582302|ref|ZP_05850095.1| Fe/S biogenesis protein nfuA [Haemophilus influenzae NT127] gi|144984126|gb|EDJ91563.1| predicted gluconate transport-associated protein [Haemophilus influenzae R3021] gi|260094670|gb|EEW78565.1| Fe/S biogenesis protein nfuA [Haemophilus influenzae NT127] Length = 198 Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ V+ ++ P +A GG I + DG L G C+GC TLK Sbjct: 107 VADDAPLIERVEYVIQTQINPQLANHGGRITLIEITEDGYAVLQFGGGCNGCSMVDVTLK 166 Query: 170 YGVANILNHFVP-EVKDIRTV 189 GV L P E+K + V Sbjct: 167 DGVEKQLVSLFPNELKGAKDV 187 >gi|188527026|ref|YP_001909713.1| nifU-like protein [Helicobacter pylori Shi470] gi|188143266|gb|ACD47683.1| nifU-like protein [Helicobacter pylori Shi470] Length = 326 Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 7/81 (8%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIV---FKGYRDGI-VFLSMRGACS 159 SG+ + +VQ+IK +V+D +RP + DGGD+ K D I V++ GAC Sbjct: 237 SGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFV 180 GC SA+ + + N L + Sbjct: 297 GCMSAATGTLFAIENALQELL 317 >gi|315635110|ref|ZP_07890388.1| Fe/S-biogenesis protein NfuA [Aggregatibacter segnis ATCC 33393] gi|315476072|gb|EFU66826.1| Fe/S-biogenesis protein NfuA [Aggregatibacter segnis ATCC 33393] Length = 194 Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ V+ ++ P +A GG I + + DG L G C+GC TLK Sbjct: 103 VADDAPLIERVEYVIQTQINPQLASHGGKITLLEITDDGYAILQFGGGCNGCSMVDVTLK 162 Query: 170 YGVANILNHFVPE 182 GV L P+ Sbjct: 163 DGVEKQLISLFPD 175 >gi|33242221|ref|NP_877162.1| NifU-like protein [Chlamydophila pneumoniae TW-183] gi|33236732|gb|AAP98819.1| NifU-like protein [Chlamydophila pneumoniae TW-183] Length = 266 Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust. Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 7/92 (7%) Query: 100 MKLDDMGSGDFIESDSAVVQR------IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLS 153 M LD + + +SD + ++ + ++ P +A DGG++ + + IV ++ Sbjct: 162 MNLDFEDANPYSQSDWEALTHEQKLYALRATIAEKIGPYIAMDGGEVTVESLENFIVTIA 221 Query: 154 MRGACSGCPSASETLKYGVANILNHFV-PEVK 184 G CSGCPS+ + + +L ++ PE++ Sbjct: 222 YSGNCSGCPSSLGSTLNSIGQLLRAYIYPELQ 253 >gi|15618770|ref|NP_225056.1| NifU-related protein [Chlamydophila pneumoniae CWL029] gi|15836394|ref|NP_300918.1| NifU-related protein [Chlamydophila pneumoniae J138] gi|4377178|gb|AAD18999.1| NifU-related protein [Chlamydophila pneumoniae CWL029] gi|8979235|dbj|BAA99069.1| NifU-related protein [Chlamydophila pneumoniae J138] Length = 266 Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust. Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 7/92 (7%) Query: 100 MKLDDMGSGDFIESDSAVVQR------IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLS 153 M LD + + +SD + ++ + ++ P +A DGG++ + + IV ++ Sbjct: 162 MNLDFEDANPYSQSDWEALTHEQKLYALRATIAEKIGPYIAMDGGEVTVESLENFIVTIA 221 Query: 154 MRGACSGCPSASETLKYGVANILNHFV-PEVK 184 G CSGCPS+ + + +L ++ PE++ Sbjct: 222 YSGNCSGCPSSLGSTLNSIGQLLRAYIYPELQ 253 >gi|289435662|ref|YP_003465534.1| NifU family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171906|emb|CBH28452.1| NifU family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313632102|gb|EFR99193.1| nitrogen fixation protein NifU [Listeria seeligeri FSL N1-067] gi|313636487|gb|EFS02228.1| nitrogen fixation protein NifU [Listeria seeligeri FSL S4-171] Length = 78 Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 127 NRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKD 185 + RP + RDGGD + + DG V + + GAC CPS+ TLK G+ L + K+ Sbjct: 14 KKFRPFLVRDGGDYELVEVTPDGTVKIKLLGACETCPSSDMTLKMGIELTLAEKIIGFKE 73 Query: 186 IRTV 189 + V Sbjct: 74 VVQV 77 >gi|261867263|ref|YP_003255185.1| putative DNA uptake protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412595|gb|ACX81966.1| IscR-regulated protein YhgI [Aggregatibacter actinomycetemcomitans D11S-1] Length = 194 Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ V+ ++ P +A GG I + + DG L G C+GC TLK Sbjct: 103 VADDAPLIERVEYVIQTQINPQLASHGGKITLLEITDDGYAILQFGGGCNGCSMVDVTLK 162 Query: 170 YGVANILNHFVP 181 GV L + P Sbjct: 163 DGVEKQLVNIFP 174 >gi|288931963|ref|YP_003436023.1| nitrogen-fixing NifU domain protein [Ferroglobus placidus DSM 10642] gi|288894211|gb|ADC65748.1| nitrogen-fixing NifU domain protein [Ferroglobus placidus DSM 10642] Length = 77 Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Query: 130 RPAVARDGGDI--VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 RPA+ RDGG+I V G V + + G+C GCP + TL V L VPEVK + Sbjct: 16 RPALIRDGGNIAVVDVDEESGEVKVKLLGSCYGCPMSQITLTMFVEQHLKSRVPEVKKVT 75 Query: 188 TV 189 V Sbjct: 76 PV 77 >gi|152996366|ref|YP_001341201.1| HesB/YadR/YfhF-family protein [Marinomonas sp. MWYL1] gi|150837290|gb|ABR71266.1| HesB/YadR/YfhF-family protein [Marinomonas sp. MWYL1] Length = 193 Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLK 169 + +DS + +I VL + + P +A GG++ DG + L G C GC + TLK Sbjct: 103 VTADSPIEDQINYVLYSDINPGLAAHGGEVSLLEVIDGKVAVLKFGGGCQGCSAVDLTLK 162 Query: 170 YGVANILNHFVPEVKDIR 187 GV L VP + ++ Sbjct: 163 EGVEKTLMEKVPGLTAVK 180 >gi|16752178|ref|NP_445545.1| nifU protein, putative [Chlamydophila pneumoniae AR39] gi|7189922|gb|AAF38786.1| nifU protein, putative [Chlamydophila pneumoniae AR39] Length = 266 Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust. Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 7/92 (7%) Query: 100 MKLDDMGSGDFIESDSAVVQR------IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLS 153 M LD + + +SD + ++ + ++ P +A DGG++ + + IV ++ Sbjct: 162 MNLDFEDANPYSQSDWEALTHEQKLYALRATIAEKIGPYIAMDGGEVTVESLENFIVTIA 221 Query: 154 MRGACSGCPSASETLKYGVANILNHFV-PEVK 184 G CSGCPS+ + + +L ++ PE++ Sbjct: 222 YSGNCSGCPSSLGSTLNSIGQLLRAYIYPELQ 253 >gi|293391255|ref|ZP_06635589.1| IscR-regulated protein YhgI [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951789|gb|EFE01908.1| IscR-regulated protein YhgI [Aggregatibacter actinomycetemcomitans D7S-1] Length = 194 Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ V+ ++ P +A GG I + + DG L G C+GC TLK Sbjct: 103 VADDAPLIERVEYVIQTQINPQLASHGGKITLLEITDDGYAILQFGGGCNGCSMVDVTLK 162 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 GV ++N F E+ R V Sbjct: 163 DGVEKQLVNIFPGELNGARDV 183 >gi|154148924|ref|YP_001405665.1| nitrogen fixation protein NifU [Campylobacter hominis ATCC BAA-381] gi|153804933|gb|ABS51940.1| nitrogen fixation protein NifU [Campylobacter hominis ATCC BAA-381] Length = 330 Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 5/65 (7%) Query: 119 QRIKEVLDNRVRPAVARDGG--DIV-FKGYRDGI--VFLSMRGACSGCPSASETLKYGVA 173 + +++V+D +RP +A DGG DIV K DG +++ GACSGC S + Y + Sbjct: 255 KAVEDVIDKEIRPMLAFDGGNLDIVDIKNADDGKTDIYIRYLGACSGCSSGATGTLYAIE 314 Query: 174 NILNH 178 N+L Sbjct: 315 NVLQE 319 >gi|32266062|ref|NP_860094.1| NifU-like protein [Helicobacter hepaticus ATCC 51449] gi|32262111|gb|AAP77160.1| NifU-like protein [Helicobacter hepaticus ATCC 51449] Length = 326 Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 8/79 (10%) Query: 108 GDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIV---FKGYRDGIVFLSMR--GACS 159 G+ ++ +VQ++K +++D +RP + DGGD+ K DG + + +R GACS Sbjct: 237 GNLAFAEMTMVQKVKSIDKIIDENIRPMLMMDGGDMEILDIKDTSDGFIDVYIRYLGACS 296 Query: 160 GCPSASETLKYGVANILNH 178 GC S + Y + ++L Sbjct: 297 GCASGATGTLYAIESVLQE 315 >gi|269302647|gb|ACZ32747.1| NifU family protein [Chlamydophila pneumoniae LPCoLN] Length = 266 Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust. Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 7/92 (7%) Query: 100 MKLDDMGSGDFIESDSAVVQR------IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLS 153 M LD + + +SD + ++ + ++ P +A DGG++ + + IV ++ Sbjct: 162 MNLDFEDANPYSQSDWEALTHEQKLYALRATIAEKIGPYIAMDGGEVTVESLENFIVTIA 221 Query: 154 MRGACSGCPSASETLKYGVANILNHFV-PEVK 184 G CSGCPS+ + + +L ++ PE++ Sbjct: 222 YSGNCSGCPSSLGSTLNSIGQLLRAYIYPELQ 253 >gi|260771979|ref|ZP_05880896.1| protein gntY [Vibrio metschnikovii CIP 69.14] gi|260612846|gb|EEX38048.1| protein gntY [Vibrio metschnikovii CIP 69.14] Length = 166 Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 ++ D+ ++ R++ + +V P +A GG + D G+ L G C+GC TLK Sbjct: 75 VDDDAPLMARVEYAIQTQVNPQLAGHGGHVSLVNITDEGVALLQFGGGCNGCSMVDVTLK 134 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ +R Sbjct: 135 EGIEKELLAQFAGELTAVR 153 >gi|329122310|ref|ZP_08250898.1| Fe/S-biogenesis protein NfuA [Haemophilus aegyptius ATCC 11116] gi|327473871|gb|EGF19288.1| Fe/S-biogenesis protein NfuA [Haemophilus aegyptius ATCC 11116] Length = 198 Score = 42.4 bits (98), Expect = 0.027, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ V+ ++ P +A GG I + DG L G C+GC TLK Sbjct: 107 VADDAPLIERVEYVIQTQINPQLANHGGRITLIEITEDGYAVLQFGGGCNGCSMVDVTLK 166 Query: 170 YGVANILNHFVP 181 GV L P Sbjct: 167 DGVEKQLVSLFP 178 >gi|168698909|ref|ZP_02731186.1| NifU-like nitrogen fixation protein [Gemmata obscuriglobus UQM 2246] Length = 76 Score = 42.4 bits (98), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 36/71 (50%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +R++ L + PA+ DG I G+ + + GAC+GCP+ T+ + + L Sbjct: 5 ERVEHALKVEIAPALMLDGAGIEVLEVTGGVASVRLSGACAGCPATIMTVITSLEDELRK 64 Query: 179 FVPEVKDIRTV 189 VPEV+ + V Sbjct: 65 KVPEVEILEAV 75 >gi|149000|gb|AAA25015.1| The predicted molecular weight and pI of ORF G are 21.8 Kd and 4.3 respectively; ORF G; putative [Haemophilus influenzae] Length = 198 Score = 42.4 bits (98), Expect = 0.028, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ V+ ++ P +A GG I + DG L G C+GC TLK Sbjct: 107 VADDAPLIERVEYVIQTQINPQLANHGGRITLIEITEDGYAVLQFGGGCNGCSMVDVTLK 166 Query: 170 YGVANILNHFVP 181 GV L P Sbjct: 167 DGVEKQLVSLFP 178 >gi|326798778|ref|YP_004316597.1| nitrogen-fixing NifU domain-containing protein [Sphingobacterium sp. 21] gi|326549542|gb|ADZ77927.1| nitrogen-fixing NifU domain-containing protein [Sphingobacterium sp. 21] Length = 92 Score = 42.4 bits (98), Expect = 0.028, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +R++E L N +RP + DGG++ + + +V L + G+C+ C + T K G+ + Sbjct: 5 ERVEEAL-NTLRPYLEADGGNVTIEEITSENVVRLRLLGSCASCSMSIMTFKAGLEQAIQ 63 Query: 178 HFVPEVKDIRTV 189 VPE+ + + Sbjct: 64 KAVPEITAVEAI 75 >gi|258620406|ref|ZP_05715444.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258624640|ref|ZP_05719576.1| Fe/S biogenesis protein nfuA [Vibrio mimicus VM603] gi|262166729|ref|ZP_06034466.1| protein gntY [Vibrio mimicus VM223] gi|262170348|ref|ZP_06038026.1| protein gntY [Vibrio mimicus MB-451] gi|258583104|gb|EEW07917.1| Fe/S biogenesis protein nfuA [Vibrio mimicus VM603] gi|258587285|gb|EEW11996.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|261891424|gb|EEY37410.1| protein gntY [Vibrio mimicus MB-451] gi|262026445|gb|EEY45113.1| protein gntY [Vibrio mimicus VM223] Length = 195 Score = 42.4 bits (98), Expect = 0.029, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ L +V P +A GG + D G+ + G C+GC TLK Sbjct: 104 VADDAPLMERVEYALQTQVNPQLAGHGGHVSLISISDDGVALVQFGGGCNGCSMVDVTLK 163 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ +R Sbjct: 164 EGIEKELLAQFAGELTAVR 182 >gi|16272381|ref|NP_438594.1| putative DNA uptake protein [Haemophilus influenzae Rd KW20] gi|260580504|ref|ZP_05848332.1| Fe/S biogenesis protein nfuA [Haemophilus influenzae RdAW] gi|1176271|sp|P31774|NFUA_HAEIN RecName: Full=Fe/S biogenesis protein nfuA gi|148877|gb|AAA24950.1| ORF 3 [Haemophilus influenzae] gi|1573408|gb|AAC22092.1| orfG protein [Haemophilus influenzae Rd KW20] gi|260092846|gb|EEW76781.1| Fe/S biogenesis protein nfuA [Haemophilus influenzae RdAW] Length = 198 Score = 42.4 bits (98), Expect = 0.029, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ V+ ++ P +A GG I + DG L G C+GC TLK Sbjct: 107 VADDAPLIERVEYVIQTQINPQLANHGGRITLIEITEDGYAVLQFGGGCNGCSMVDVTLK 166 Query: 170 YGVANILNHFVP 181 GV L P Sbjct: 167 DGVEKQLVSLFP 178 >gi|145632678|ref|ZP_01788412.1| conserved hypothetical 21.9 kD protein in locus involved in transformation [Haemophilus influenzae 3655] gi|145634570|ref|ZP_01790279.1| predicted gluconate transport-associated protein [Haemophilus influenzae PittAA] gi|229844407|ref|ZP_04464547.1| putative DNA uptake protein [Haemophilus influenzae 6P18H1] gi|229846519|ref|ZP_04466627.1| putative DNA uptake protein [Haemophilus influenzae 7P49H1] gi|144986873|gb|EDJ93425.1| conserved hypothetical 21.9 kD protein in locus involved in transformation [Haemophilus influenzae 3655] gi|145268115|gb|EDK08110.1| predicted gluconate transport-associated protein [Haemophilus influenzae PittAA] gi|229810612|gb|EEP46330.1| putative DNA uptake protein [Haemophilus influenzae 7P49H1] gi|229812656|gb|EEP48345.1| putative DNA uptake protein [Haemophilus influenzae 6P18H1] gi|309972410|gb|ADO95611.1| Fe/S biogenesis protein NfuA [Haemophilus influenzae R2846] Length = 198 Score = 42.4 bits (98), Expect = 0.029, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ V+ ++ P +A GG I + DG L G C+GC TLK Sbjct: 107 VADDAPLIERVEYVIQTQINPQLANHGGRITLIEITEDGYAVLQFGGGCNGCSMVDVTLK 166 Query: 170 YGVANILNHFVP 181 GV L P Sbjct: 167 DGVEKQLVSLFP 178 >gi|68249033|ref|YP_248145.1| putative DNA uptake protein [Haemophilus influenzae 86-028NP] gi|145628803|ref|ZP_01784603.1| conserved hypothetical 21.9 kD protein in locus involved in transformation [Haemophilus influenzae 22.1-21] gi|145636298|ref|ZP_01791967.1| predicted gluconate transport-associated protein [Haemophilus influenzae PittHH] gi|145638657|ref|ZP_01794266.1| predicted gluconate transport-associated protein [Haemophilus influenzae PittII] gi|145640398|ref|ZP_01795982.1| conserved hypothetical 21.9 kD protein in locus involved in transformation [Haemophilus influenzae R3021] gi|148825287|ref|YP_001290040.1| putative DNA uptake protein [Haemophilus influenzae PittEE] gi|148827630|ref|YP_001292383.1| putative DNA uptake protein [Haemophilus influenzae PittGG] gi|319775640|ref|YP_004138128.1| Fe/S biogenesis protein nfu [Haemophilus influenzae F3047] gi|81336556|sp|Q4QNB2|NFUA_HAEI8 RecName: Full=Fe/S biogenesis protein nfuA gi|166990525|sp|A5UA56|NFUA_HAEIE RecName: Full=Fe/S biogenesis protein nfuA gi|166990526|sp|A5UGU4|NFUA_HAEIG RecName: Full=Fe/S biogenesis protein nfuA gi|68057232|gb|AAX87485.1| conserved hypothetical 21.9 kD protein in locus involved in transformation [Haemophilus influenzae 86-028NP] gi|144979273|gb|EDJ88959.1| conserved hypothetical 21.9 kD protein in locus involved in transformation [Haemophilus influenzae 22.1-21] gi|145270463|gb|EDK10397.1| predicted gluconate transport-associated protein [Haemophilus influenzae PittHH] gi|145272252|gb|EDK12160.1| predicted gluconate transport-associated protein [Haemophilus influenzae PittII] gi|145274984|gb|EDK14846.1| conserved hypothetical 21.9 kD protein in locus involved in transformation [Haemophilus influenzae 22.4-21] gi|148715447|gb|ABQ97657.1| predicted gluconate transport-associated protein [Haemophilus influenzae PittEE] gi|148718872|gb|ABQ99999.1| conserved hypothetical 21.9 kD protein in locus involved in transformation [Haemophilus influenzae PittGG] gi|301169133|emb|CBW28730.1| predicted gluconate transport associated protein [Haemophilus influenzae 10810] gi|309750151|gb|ADO80135.1| Fe/S biogenesis protein NfuA [Haemophilus influenzae R2866] gi|317450231|emb|CBY86447.1| Fe/S biogenesis protein nfu [Haemophilus influenzae F3047] Length = 198 Score = 42.4 bits (98), Expect = 0.030, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ V+ ++ P +A GG I + DG L G C+GC TLK Sbjct: 107 VADDAPLIERVEYVIQTQINPQLANHGGRITLIEITEDGYAVLQFGGGCNGCSMVDVTLK 166 Query: 170 YGVANILNHFVP 181 GV L P Sbjct: 167 DGVEKQLVSLFP 178 >gi|319898046|ref|YP_004136243.1| fe/s biogenesis protein nfu [Haemophilus influenzae F3031] gi|317433552|emb|CBY81936.1| Fe/S biogenesis protein nfu [Haemophilus influenzae F3031] Length = 198 Score = 42.4 bits (98), Expect = 0.030, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ V+ ++ P +A GG I + DG L G C+GC TLK Sbjct: 107 VADDAPLIERVEYVIQTQINPQLANHGGRITLIEITEDGYAVLQFGGGCNGCSMVDVTLK 166 Query: 170 YGVANILNHFVP 181 GV L P Sbjct: 167 DGVEKQLVSLFP 178 >gi|262402006|ref|ZP_06078571.1| protein gntY [Vibrio sp. RC586] gi|262351978|gb|EEZ01109.1| protein gntY [Vibrio sp. RC586] Length = 166 Score = 42.4 bits (98), Expect = 0.030, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ L +V P +A GG + D G+ + G C+GC TLK Sbjct: 75 VADDAPLMERVEYALQTQVNPQLAGHGGHVSLISISDDGVALVQFGGGCNGCSMVDVTLK 134 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ +R Sbjct: 135 EGIEKELLAQFAGELTAVR 153 >gi|329297358|ref|ZP_08254694.1| Fe/S biogenesis protein NfuA [Plautia stali symbiont] Length = 191 Score = 42.4 bits (98), Expect = 0.030, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +V+R++ +L ++ P +A GG + D G L G C+GC TLK Sbjct: 101 VSDDAPMVERVEYLLQAQINPQLASHGGRVSLMEITDEGYAILQFGGGCNGCSMIDVTLK 160 Query: 170 YGVANILNHFVPEVKDI 186 G+ L PE+K + Sbjct: 161 DGIEKELLAAFPELKGV 177 >gi|300869885|ref|YP_003784756.1| NifU like N terminal domain-containing protein [Brachyspira pilosicoli 95/1000] gi|300687584|gb|ADK30255.1| NifU like N terminal domain protein [Brachyspira pilosicoli 95/1000] Length = 277 Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 12/87 (13%) Query: 95 GGLG--DMKLDDMGSGDFIESDSA-------VVQRIK---EVLDNRVRPAVARDGGDIVF 142 GG G +KL+D+ + + E + A VQ+IK E ++ + P + DGG Sbjct: 171 GGCGACKVKLEDILNEELAERERAQKNAPLTTVQKIKKIEEAIETVINPMLKMDGGSCKL 230 Query: 143 KGYRDGIVFLSMRGACSGCPSASETLK 169 IV +S +GACS C ++ TLK Sbjct: 231 VDIEGNIVKISFKGACSSCMASKNTLK 257 >gi|307823832|ref|ZP_07654060.1| Fe-S cluster assembly protein NifU [Methylobacter tundripaludum SV96] gi|307735126|gb|EFO05975.1| Fe-S cluster assembly protein NifU [Methylobacter tundripaludum SV96] Length = 301 Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 1/51 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 +++I+EVL++ +RPA+ DGGD+ +++M GAC+GC A+ T+ Sbjct: 220 IKKIEEVLES-LRPALMADGGDVELVEVIGNTAYVNMTGACNGCQMAAMTI 269 >gi|39997110|ref|NP_953061.1| NifU family protein [Geobacter sulfurreducens PCA] gi|39984000|gb|AAR35388.1| NifU family protein [Geobacter sulfurreducens PCA] gi|298506123|gb|ADI84846.1| nitrogen fixation iron-sulfur cluster assembly protein NifU [Geobacter sulfurreducens KN400] Length = 285 Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +Q I+E L+ +RP + DGGD+ V ++ R AC+GC ++ T K+ V L Sbjct: 213 MQLIQETLEKEIRPQLWADGGDLELIDISGSEVQIAFRKACAGCAASGNTAKF-VEMKLR 271 Query: 178 HFVPE 182 V E Sbjct: 272 ELVAE 276 >gi|71907146|ref|YP_284733.1| Fe-S cluster assembly protein NifU [Dechloromonas aromatica RCB] gi|71846767|gb|AAZ46263.1| Fe-S cluster assembly protein NifU [Dechloromonas aromatica RCB] Length = 298 Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 + +I+EVL++ VRP + RD GD+ + +++ ++GACSGC + TL Sbjct: 222 IAKIQEVLES-VRPMLLRDHGDVELADVQGKKIYVHLKGACSGCMMEAATL 271 >gi|98152888|ref|YP_611137.1| nitrogen-fixing NifU-like [Sphingopyxis alaskensis RB2256] gi|95105285|gb|ABF54908.1| nitrogen-fixing NifU-like [Sphingopyxis alaskensis RB2256] Length = 311 Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 7/76 (9%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGD---IVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 +++ +R+ L VRP +A GGD + G + + FL GAC GCP+++ T G Sbjct: 114 ASLFERVDAALAT-VRPTLAGHGGDAELVEVSGDKAVVRFL---GACDGCPASALTFYAG 169 Query: 172 VANILNHFVPEVKDIR 187 V + VPE+++++ Sbjct: 170 VKKAITEQVPEIREVK 185 >gi|308160832|gb|EFO63302.1| Hypothetical protein GLP15_1091 [Giardia lamblia P15] Length = 197 Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust. Identities = 31/160 (19%), Positives = 73/160 (45%), Gaps = 16/160 (10%) Query: 37 EISPLASRIFSIPGIASVYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNG 95 E L S + + G+ + +TV + Q W +R + + F P N Sbjct: 41 EAPSLQSDLMKVKGVKKLSISPTGVTVTVRSQGIWPSVRSAIEDKVYAAFDPNTPHTPN- 99 Query: 96 GLGDMKL---DDMGSGDFIESDSAVVQRIKEVL-DNRVRPAVARDGGDIVFKGY----RD 147 +++L + + +G + ++ +++ E+L + P +ARDGG ++ + + Sbjct: 100 ---ELRLAIQEILNTGSRVPNN---IRKASELLIKAAINPFLARDGGSCSYERHELTDKG 153 Query: 148 GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 +V++ + G CSGC ++ T+ V + ++P++ ++ Sbjct: 154 LVVYIKLHGNCSGCSKSTTTMNTFVISEFKRYIPDIHTVK 193 >gi|299771122|ref|YP_003733148.1| Iron-sulfur cluster biosynthesis family protein [Acinetobacter sp. DR1] gi|298701210|gb|ADI91775.1| Iron-sulfur cluster biosynthesis family protein [Acinetobacter sp. DR1] Length = 212 Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D+++ +RI +L + P +A GG+ +D L G C GC + TL Sbjct: 120 DASIEERITYILQAEINPGLAGHGGNCSLVEVQDDPEHGLTAVLKFGGGCQGCSAIDVTL 179 Query: 169 KYGVANILNHFVPEVKDI 186 K GV L +PE++ + Sbjct: 180 KQGVETTLKEQIPELQRV 197 >gi|298206741|ref|YP_003714920.1| NifU protein, putative [Croceibacter atlanticus HTCC2559] gi|83849372|gb|EAP87240.1| NifU protein, putative [Croceibacter atlanticus HTCC2559] Length = 80 Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 128 RVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +RP + DGGDI D VF+ + G C GC TLK GV + P+++ + Sbjct: 16 EIRPFLQNDGGDISLVSIEDDKTVFVKLMGNCVGCSVNQMTLKSGVEMTIKKHAPQIEKV 75 >gi|212702241|ref|ZP_03310369.1| hypothetical protein DESPIG_00252 [Desulfovibrio piger ATCC 29098] gi|212674304|gb|EEB34787.1| hypothetical protein DESPIG_00252 [Desulfovibrio piger ATCC 29098] Length = 260 Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%) Query: 118 VQRIKEVL---DNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 VQR++ V+ + +RP +A DGGDI V +S+RG C+ C S+ T++ V Sbjct: 186 VQRMQLVMKTIEEEIRPQLAADGGDIELVDVDGKRVVVSLRGRCAQCRSSEVTIRNLVER 245 Query: 175 ILNHFV 180 +L V Sbjct: 246 VLREHV 251 >gi|307151545|ref|YP_003886929.1| Rieske (2Fe-2S) iron-sulfur domain-containing protein [Cyanothece sp. PCC 7822] gi|306981773|gb|ADN13654.1| Rieske (2Fe-2S) iron-sulfur domain protein [Cyanothece sp. PCC 7822] Length = 292 Score = 42.0 bits (97), Expect = 0.036, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILN 177 +R+ + L+ VRP + GD+ V + + G CS CP+++ T+K GV + Sbjct: 100 KRLNQALEE-VRPGLKSHNGDVELVAIELPDTVKVRLVGTCSNCPASTLTMKQGVEQTIK 158 Query: 178 HFVPEVKDIRTV 189 ++ PE+ + +V Sbjct: 159 NYCPEITHVISV 170 >gi|153955633|ref|YP_001396398.1| hypothetical protein CKL_3019 [Clostridium kluyveri DSM 555] gi|219856010|ref|YP_002473132.1| hypothetical protein CKR_2667 [Clostridium kluyveri NBRC 12016] gi|146348491|gb|EDK35027.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219569734|dbj|BAH07718.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 107 Score = 42.0 bits (97), Expect = 0.036, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 45/74 (60%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 ++ ++I +V+D +VRP + GDI G +DG+V + + G CSGC SA T++ V Sbjct: 14 SMKEKILKVIDEKVRPYLNSHNGDIEVVGVKDGVVKVKLLGQCSGCISAKYTVQDIVEGS 73 Query: 176 LNHFVPEVKDIRTV 189 + + +PE+K + + Sbjct: 74 IKNEIPEIKSVEVI 87 >gi|330507732|ref|YP_004384160.1| NifU-like domain-containing protein [Methanosaeta concilii GP-6] gi|328928540|gb|AEB68342.1| NifU-like domain protein [Methanosaeta concilii GP-6] Length = 75 Score = 42.0 bits (97), Expect = 0.036, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 128 RVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 ++R + DGGD+ DGIV + ++G C+GCP + TLK + L V +K + Sbjct: 14 KIREGLRVDGGDVELVDISDGIVTVRLQGHCAGCPFSQMTLKNFIEKELVKSVAGIKGVV 73 Query: 188 TV 189 +V Sbjct: 74 SV 75 >gi|165909938|gb|ABY73882.1| thioredoxin-like protein [Flammeovirga yaeyamensis] Length = 233 Score = 42.0 bits (97), Expect = 0.037, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D++V + I VL + + P +A GG+ ++ L G C GC + TL Sbjct: 141 DASVEEHITYVLQSEINPGLAGHGGNCALVEVKEDPEKGLTAVLKFGGGCQGCSAIDITL 200 Query: 169 KYGVANILNHFVPEVKDI 186 K GV L +PE+ ++ Sbjct: 201 KQGVETTLKQHIPELMNV 218 >gi|189424665|ref|YP_001951842.1| Fe-S cluster assembly protein NifU [Geobacter lovleyi SZ] gi|189420924|gb|ACD95322.1| Fe-S cluster assembly protein NifU [Geobacter lovleyi SZ] Length = 288 Score = 42.0 bits (97), Expect = 0.037, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 S+ +Q ++EVL+ +RP + DGGD+ V ++ R AC+GC S+ T K+ Sbjct: 211 SNLKKMQLVQEVLERDIRPMLRADGGDLELIDIDGDHVQIAFRKACAGCASSGNTAKF 268 >gi|332674262|gb|AEE71079.1| NifU family protein [Helicobacter pylori 83] Length = 89 Score = 42.0 bits (97), Expect = 0.037, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 34/60 (56%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 IE +Q+ V+ ++RP + +DGG+I G + +++++ GAC C S+ TLK Sbjct: 1 MIEFSDEDLQKPVRVVIEKIRPYLLKDGGNIEVLGVKSMKIYVTLEGACKTCSSSKITLK 60 >gi|319952564|ref|YP_004163831.1| nitrogen-fixing nifu domain-containing protein [Cellulophaga algicola DSM 14237] gi|319421224|gb|ADV48333.1| nitrogen-fixing NifU domain-containing protein [Cellulophaga algicola DSM 14237] Length = 79 Score = 42.0 bits (97), Expect = 0.037, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 128 RVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +RP + DGGDI D V + + GAC GC TLK GV + + P+++++ Sbjct: 16 EIRPFLQSDGGDISLVSIDNDTSVKVRLEGACIGCTVNQMTLKSGVEMTIKKYAPQIEEV 75 >gi|33151606|ref|NP_872959.1| putative DNA uptake protein [Haemophilus ducreyi 35000HP] gi|51701995|sp|Q7VNV0|NFUA_HAEDU RecName: Full=Fe/S biogenesis protein nfuA gi|33147826|gb|AAP95348.1| transformation locus protein OrfG-like protein [Haemophilus ducreyi 35000HP] Length = 199 Score = 42.0 bits (97), Expect = 0.038, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 I D+ ++R+ V+ +V P +A GG + + D L G C+GC TLK Sbjct: 108 IADDAPFIERLDYVIQTQVNPQLASHGGQVTLIEVTEDKYAILQFGGGCNGCSMVDVTLK 167 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L F E+K ++ V Sbjct: 168 EGIEKQLLATFPTELKGVKDV 188 >gi|294678787|ref|YP_003579402.1| nitrogen fixation protein NifU [Rhodobacter capsulatus SB 1003] gi|1709289|sp|Q07178|NIFU1_RHOCA RecName: Full=Nitrogen fixation protein nifU 1 gi|297917|emb|CAA48486.1| nifU (copyI) [Rhodobacter capsulatus] gi|294477607|gb|ADE86995.1| nitrogen fixation protein NifU-2 [Rhodobacter capsulatus SB 1003] Length = 135 Score = 42.0 bits (97), Expect = 0.038, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 V RI+ ++D +RP RDGGDI V + + GAC+GC A +TL YGV Sbjct: 63 VTRIRALIDE-MRPTFRRDGGDIELVRVEGAKVIVHLSGACAGCMLAGQTL-YGVQK 117 >gi|226952464|ref|ZP_03822928.1| DNA uptake protein [Acinetobacter sp. ATCC 27244] gi|294649752|ref|ZP_06727157.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] gi|226836786|gb|EEH69169.1| DNA uptake protein [Acinetobacter sp. ATCC 27244] gi|292824361|gb|EFF83159.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] Length = 212 Score = 42.0 bits (97), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 5/78 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDI----VFKGYRDGIV-FLSMRGACSGCPSASETL 168 D+++ +RI +L + + P +A GG+ V + G+ L G C GC + TL Sbjct: 120 DASIEERITYILQSEINPGLAGHGGNCSLVEVQEDAEHGLTAVLKFGGGCQGCSAIDVTL 179 Query: 169 KYGVANILNHFVPEVKDI 186 K GV L +PE++ + Sbjct: 180 KQGVETTLRQHIPELQRV 197 >gi|255030011|ref|ZP_05301962.1| hypothetical protein LmonL_14764 [Listeria monocytogenes LO28] Length = 61 Score = 42.0 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Query: 131 PAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 P + RDGGD + + +DGIV + + GAC CPS+ TLK G+ L + K++ V Sbjct: 1 PFLVRDGGDYELIEVTQDGIVKIKLLGACETCPSSDMTLKMGIELTLAEKIIGFKEVVQV 60 >gi|183981881|ref|YP_001850172.1| hypothetical protein MMAR_1868 [Mycobacterium marinum M] gi|183175207|gb|ACC40317.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 324 Score = 42.0 bits (97), Expect = 0.040, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 6/78 (7%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDI----VFKGYR-DGIVFLSMRGACSGCPSASETLKYG 171 V +R+ + LD VRP + GGD+ V G D V L+ G+C CPS++ TL+ Sbjct: 106 VHRRVSDALDG-VRPYLGSHGGDVELIDVVTGRSGDITVRLAFTGSCKSCPSSAVTLELA 164 Query: 172 VANILNHFVPEVKDIRTV 189 V + + PE+ I V Sbjct: 165 VQDAVRAAAPEISAIEVV 182 >gi|293608910|ref|ZP_06691213.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829483|gb|EFF87845.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325121322|gb|ADY80845.1| putative membrane-bound protein in GNT I transport system (GntY) [Acinetobacter calcoaceticus PHEA-2] Length = 212 Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D+++ +RI +L + P +A GG+ +D L G C GC + TL Sbjct: 120 DASIEERITYILQAEINPGLAGHGGNCSLVEVQDDPEHGLTAVLKFGGGCQGCSAIDVTL 179 Query: 169 KYGVANILNHFVPEVKDI 186 K GV L +PE++ + Sbjct: 180 KQGVETTLRENIPELQRV 197 >gi|261839079|gb|ACX98844.1| hypothetical protein HPKB_0231 [Helicobacter pylori 52] Length = 326 Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 7/85 (8%) Query: 103 DDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVF---KGYRDGI-VFLSMR 155 D SG+ + +VQ+IK +V++ +RP + DGGD+ K D I V++ Sbjct: 233 DKSQSGELAFREMTMVQKIKAVDKVIEENIRPMLMMDGGDLEILDIKESDDYIDVYIRYM 292 Query: 156 GACSGCPSASETLKYGVANILNHFV 180 GAC GC SA+ + + N L + Sbjct: 293 GACDGCMSATTGTLFAIENALQELL 317 >gi|283955341|ref|ZP_06372840.1| nifU-like protein [Campylobacter jejuni subsp. jejuni 414] gi|283793101|gb|EFC31871.1| nifU-like protein [Campylobacter jejuni subsp. jejuni 414] Length = 323 Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDI----VFKGYRDGI-VFLSMRGACSGCPSASETLKYGV 172 ++ ++ VLD +RP + DGGD+ + K I V++ GACSGC S S Y + Sbjct: 247 LKAVESVLDAEIRPMLHNDGGDLEVIDIQKAESAAIDVYIRYLGACSGCSSGSGATLYAI 306 Query: 173 ANILNH 178 IL Sbjct: 307 ETILQE 312 >gi|11498240|ref|NP_069466.1| nifU protein (nifU-3) [Archaeoglobus fulgidus DSM 4304] gi|2649997|gb|AAB90617.1| nifU protein (nifU-3) [Archaeoglobus fulgidus DSM 4304] Length = 77 Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDG--IVFLSMRGACSGCPSASETLKYGVANIL 176 ++++EV++ +RPA+ RDGG+I +G V + + GAC GCP + TL V L Sbjct: 5 EKVEEVVEKDIRPALMRDGGNIAVVDVDEGSGTVKVQLLGACGGCPMSMITLTSFVERYL 64 Query: 177 N 177 Sbjct: 65 R 65 >gi|237750884|ref|ZP_04581364.1| predicted protein [Helicobacter bilis ATCC 43879] gi|229373329|gb|EEO23720.1| predicted protein [Helicobacter bilis ATCC 43879] Length = 324 Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIV---FKGYRDGIVFLSMR--GACSGCPSASETLKYGV 172 V+ I +V+D +RP + DGGD+ K DG + + +R GACSGC S + Y + Sbjct: 248 VKAIDKVIDANIRPMLMMDGGDMEILDIKDTSDGFIDVYIRYLGACSGCASGATGTLYAI 307 Query: 173 ANILNH 178 ++L Sbjct: 308 ESVLQE 313 >gi|220934655|ref|YP_002513554.1| nitrogen-fixing NifU domain protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995965|gb|ACL72567.1| nitrogen-fixing NifU domain protein [Thioalkalivibrio sp. HL-EbGR7] Length = 281 Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 D AVV+ E R + +DGGDI F D V + ++GAC GCP ++ L+ V Sbjct: 209 DEAVVREAVE----EARKILMQDGGDIEFVAIEDRTVRVRLKGACVGCPRSTLDLRNVVE 264 Query: 174 NILNHFVPEVKDI 186 ++ P V + Sbjct: 265 RLVRSRAPGVARV 277 >gi|271965282|ref|YP_003339478.1| hypothetical protein Sros_3815 [Streptosporangium roseum DSM 43021] gi|270508457|gb|ACZ86735.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021] Length = 186 Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 5/94 (5%) Query: 97 LGDMKLDDMGSGDFIESDS---AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFL 152 L + DD+ SG + D + +R++ LD VRP + G + G + G+V L Sbjct: 64 LHRLATDDLVSGLLVLHDLHPLSTAERVRAALDA-VRPQLGLHEGGVELLGVDETGVVRL 122 Query: 153 SMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 ++G C GCPS+ + V + PEV + Sbjct: 123 RLQGTCRGCPSSQLAVTSAVERAVLQAAPEVSGV 156 >gi|261838766|gb|ACX98532.1| nifU-like protein [Helicobacter pylori 51] Length = 89 Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 34/60 (56%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 IE +Q+ V+ ++RP + +DGG+I G + +++++ GAC C S+ TLK Sbjct: 1 MIEFSDEDLQKPVRVVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLK 60 >gi|15614281|ref|NP_242584.1| hypothetical protein BH1718 [Bacillus halodurans C-125] gi|10174335|dbj|BAB05437.1| BH1718 [Bacillus halodurans C-125] Length = 380 Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 2/79 (2%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 M IQ+ E TP+P T+K Q + + +++ + E P ++F I G+ VY D Sbjct: 1 MNIQSIEPTPSPNTMKLTLDQTLPQGKSNNYTLKNKEEAPPFIQKLFEIEGVKGVYHVAD 60 Query: 60 FITVGKD-QYDWEHLRPPV 77 F+ + ++ + DW+ + P V Sbjct: 61 FLAIERNAKVDWKVILPKV 79 >gi|146281734|ref|YP_001171887.1| Fe-S cluster assembly protein NifU [Pseudomonas stutzeri A1501] gi|145569939|gb|ABP79045.1| Fe-S cluster assembly protein NifU [Pseudomonas stutzeri A1501] Length = 316 Score = 41.6 bits (96), Expect = 0.046, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 ++RI+ VL++ +RP + RD GD+ +++ + GAC+GC AS TL Sbjct: 236 IRRIERVLES-IRPTLQRDHGDVELLDVEGKNIYVKLTGACTGCQMASMTL 285 >gi|217033876|ref|ZP_03439300.1| hypothetical protein HP9810_870g8 [Helicobacter pylori 98-10] gi|216943639|gb|EEC23084.1| hypothetical protein HP9810_870g8 [Helicobacter pylori 98-10] gi|315585879|gb|ADU40260.1| NifU family protein [Helicobacter pylori 35A] gi|317178197|dbj|BAJ55986.1| conserved hypothetical nifU-like protein [Helicobacter pylori F16] gi|317179669|dbj|BAJ57457.1| conserved hypothetical nifU-like protein [Helicobacter pylori F30] Length = 89 Score = 41.6 bits (96), Expect = 0.047, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 34/60 (56%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 IE +Q+ V+ ++RP + +DGG+I G + +++++ GAC C S+ TLK Sbjct: 1 MIEFSDEDLQKPVRVVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLK 60 >gi|26553528|ref|NP_757462.1| nitrogen fixation protein [Mycoplasma penetrans HF-2] gi|26453534|dbj|BAC43866.1| nitrogen fixation protein [Mycoplasma penetrans HF-2] Length = 83 Score = 41.6 bits (96), Expect = 0.048, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 3/74 (4%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGV 172 + ++ IK+V+D+ +R + +DGGD+ F Y G V + + G C GC T K G+ Sbjct: 7 NKIIDEIKDVIDS-IRFYINQDGGDLEFVDYNPEKGEVTIKILGECIGCSLIDVTYKEGL 65 Query: 173 ANILNHFVPEVKDI 186 IL + V VK + Sbjct: 66 ETILKNEVEGVKSV 79 >gi|119946808|ref|YP_944488.1| putative DNA uptake protein [Psychromonas ingrahamii 37] gi|150383446|sp|A1SZH4|NFUA_PSYIN RecName: Full=Fe/S biogenesis protein nfuA gi|119865412|gb|ABM04889.1| HesB/YadR/YfhF-family protein [Psychromonas ingrahamii 37] Length = 193 Score = 41.6 bits (96), Expect = 0.049, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 ++ D+ +++R++ V+ ++ P +A GG I + + D + + G C+GC TLK Sbjct: 101 VKDDAPLLERVEYVIQVQINPQLASHGGFIKLIEITEDNVAIIEFGGGCNGCSQVDLTLK 160 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 GV +++ F E+ +R + Sbjct: 161 QGVEKELIDEFSGELNAVRDI 181 >gi|218246101|ref|YP_002371472.1| nitrogen-fixing NifU domain-containing protein [Cyanothece sp. PCC 8801] gi|218166579|gb|ACK65316.1| nitrogen-fixing NifU domain protein [Cyanothece sp. PCC 8801] Length = 289 Score = 41.6 bits (96), Expect = 0.050, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILN 177 +RI++ L+ VRP + GD+ + V + + G CS CP+++ T+K GV + Sbjct: 97 ERIQQALET-VRPGLKSHHGDVELVAIKFPDTVEVRLIGTCSNCPASTLTMKQGVEQAIK 155 Query: 178 HFVPEV 183 + PE+ Sbjct: 156 TYCPEI 161 >gi|257059152|ref|YP_003137040.1| nitrogen-fixing NifU domain protein [Cyanothece sp. PCC 8802] gi|256589318|gb|ACV00205.1| nitrogen-fixing NifU domain protein [Cyanothece sp. PCC 8802] Length = 289 Score = 41.6 bits (96), Expect = 0.051, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILN 177 +RI++ L+ VRP + GD+ + V + + G CS CP+++ T+K GV + Sbjct: 97 ERIQQALET-VRPGLKSHHGDVELVAIKFPDTVEVRLIGTCSNCPASTLTMKQGVEQAIK 155 Query: 178 HFVPEV 183 + PE+ Sbjct: 156 TYCPEI 161 >gi|207092082|ref|ZP_03239869.1| nifU-like protein [Helicobacter pylori HPKX_438_AG0C1] Length = 326 Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 7/81 (8%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIV---FKGYRDGI-VFLSMRGACS 159 +G+ + +VQ+IK +V+D +RP + DGGD+ K D I V++ GAC Sbjct: 237 NGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFV 180 GC SA+ + + N L + Sbjct: 297 GCMSATTGTLFAIENALQELL 317 >gi|210134422|ref|YP_002300861.1| nifu-like protein [Helicobacter pylori P12] gi|210132390|gb|ACJ07381.1| nifu-like protein [Helicobacter pylori P12] Length = 326 Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 7/81 (8%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIV---FKGYRDGI-VFLSMRGACS 159 +G+ + +VQ+IK +V+D +RP + DGGD+ K D I V++ GAC Sbjct: 237 NGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFV 180 GC SA+ + + N L + Sbjct: 297 GCMSATTGTLFAIENALQELL 317 >gi|326795571|ref|YP_004313391.1| Fe/S biogenesis protein nfuA [Marinomonas mediterranea MMB-1] gi|326546335|gb|ADZ91555.1| Fe/S biogenesis protein nfuA [Marinomonas mediterranea MMB-1] Length = 193 Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + DS + +I VL + V P +A GG++ + + G+ L G C GC + TLK Sbjct: 103 VTPDSPIEDQINYVLYSDVNPGLAAHGGEVKLVEVIEGGVAVLQFGGGCQGCSAVDLTLK 162 Query: 170 YGVANILNHFVPEVKDIR 187 GV L VP + ++ Sbjct: 163 EGVEKTLIEKVPGLTAVK 180 >gi|167041225|gb|ABZ05982.1| putative NifU-like domain protein [uncultured marine microorganism HF4000_001N02] Length = 79 Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 124 VLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEV 183 ++ + V P VA GG + G DG ++ G C GC TLK GV ++ VP + Sbjct: 3 IIASEVNPVVASHGGHVDLIGVDDGKAIIAFGGGCQGCGMVDVTLKQGVEVMIKDSVPGI 62 Query: 184 KDI 186 ++ Sbjct: 63 SEV 65 >gi|332289242|ref|YP_004420094.1| putative DNA uptake protein [Gallibacterium anatis UMN179] gi|330432138|gb|AEC17197.1| putative DNA uptake protein [Gallibacterium anatis UMN179] Length = 194 Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ V+ ++ P +A GG I D G L G C+GC TLK Sbjct: 103 VADDAPLIERVEYVIQTQINPQLANHGGRITLIEITDKGEAILQFGGGCNGCSMVDVTLK 162 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 GV +L F E+ ++ V Sbjct: 163 DGVEKQLLAQFEGELTGVKDV 183 >gi|95928565|ref|ZP_01311312.1| nitrogen-fixing NifU-like [Desulfuromonas acetoxidans DSM 684] gi|95135355|gb|EAT17007.1| nitrogen-fixing NifU-like [Desulfuromonas acetoxidans DSM 684] Length = 323 Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 10/79 (12%) Query: 118 VQRIKEVLDNRVRPAVARDGG----DIVFKGYRDGIVFLSM--RGACSGCP-SASETLKY 170 V+ I+ VLD VRPA+A DGG D V G DG V++ + +GAC GC S + TL + Sbjct: 246 VKEIEAVLDRHVRPALAGDGGGIELDDVQPGENDGQVYVHVKYKGACKGCAGSVAGTLGF 305 Query: 171 GVANILNHFVPEVKDIRTV 189 V +L + E IR V Sbjct: 306 -VQTMLQENLSEA--IRVV 321 >gi|317012066|gb|ADU82674.1| nifu-like protein [Helicobacter pylori Lithuania75] Length = 326 Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 7/81 (8%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIV---FKGYRDGI-VFLSMRGACS 159 +G+ + +VQ+IK +V+D +RP + DGGD+ K D I V++ GAC Sbjct: 237 NGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFV 180 GC SA+ + + N L + Sbjct: 297 GCMSATTGTLFAIENALQELL 317 >gi|118340528|gb|ABK80578.1| putative nifU domain protein [uncultured marine Nitrospinaceae bacterium] Length = 92 Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 5/81 (6%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYF----GY 58 + E TPN LKF Q +L G F++ +EA+ P+A++IF+ +ASV+ Sbjct: 5 VTVETTPNEHALKFSVNQQILDSGYKTFNSLEEAKDFPVAAKIFANEAVASVFVMAQPSS 64 Query: 59 DFITVGKD-QYDWEHLRPPVL 78 FITV K + W L+ ++ Sbjct: 65 AFITVTKKPETSWGDLQNKIV 85 >gi|319651240|ref|ZP_08005370.1| YpgR protein [Bacillus sp. 2_A_57_CT2] gi|317397020|gb|EFV77728.1| YpgR protein [Bacillus sp. 2_A_57_CT2] Length = 377 Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I + + + A ++ K+ + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILDEELPMGKANNYKKEKKEGAPKIILDILEIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHLRPPV 77 + +YDW+ L P V Sbjct: 67 NAKYDWKELLPQV 79 >gi|290791697|gb|EFD95356.1| hypothetical protein GL50803_32838 [Giardia lamblia ATCC 50803] Length = 197 Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 5/75 (6%) Query: 118 VQRIKEVL-DNRVRPAVARDGGDIVFKGY----RDGIVFLSMRGACSGCPSASETLKYGV 172 ++R E+L + P +ARDGG ++ + + +V++ + G CSGC ++ T+ V Sbjct: 119 IRRASELLIRAAINPFLARDGGSCSYRRHEVTDKGLVVYIELHGNCSGCSKSTTTMNTFV 178 Query: 173 ANILNHFVPEVKDIR 187 ++P++ +R Sbjct: 179 IGEFKKYIPDIHTVR 193 >gi|113461632|ref|YP_719701.1| putative DNA uptake protein [Haemophilus somnus 129PT] gi|170718659|ref|YP_001783854.1| DNA uptake protein [Haemophilus somnus 2336] gi|119370610|sp|Q0I5I6|NFUA_HAES1 RecName: Full=Fe/S biogenesis protein nfuA gi|189041725|sp|B0URV5|NFUA_HAES2 RecName: Full=Fe/S biogenesis protein nfuA gi|112823675|gb|ABI25764.1| conserved hypothetical protein [Haemophilus somnus 129PT] gi|168826788|gb|ACA32159.1| HesB/YadR/YfhF-family protein [Haemophilus somnus 2336] Length = 193 Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ + ++ P +A GG I + +DG L G C+GC TLK Sbjct: 102 VADDAPLIERVEYAIQTQINPQLAGHGGHITLIEITKDGKAILQFGGGCNGCSMVDVTLK 161 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L F E+ ++ V Sbjct: 162 DGIEKQLLAMFADELTGVKDV 182 >gi|172036772|ref|YP_001803273.1| NifU-like protein [Cyanothece sp. ATCC 51142] gi|171698226|gb|ACB51207.1| NifU-like protein [Cyanothece sp. ATCC 51142] Length = 286 Score = 41.2 bits (95), Expect = 0.062, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILN 177 +R+++ L VRP + GD+ + V + + G CS CP+++ T+K G+ + Sbjct: 95 KRLEQALAT-VRPGLKSHHGDVELVAIKLPNTVEVKLVGTCSNCPASTLTMKQGIEQAIK 153 Query: 178 HFVPEVKDIRTV 189 + PE+ ++ +V Sbjct: 154 TYCPEITNVISV 165 >gi|260913511|ref|ZP_05919989.1| Fe/S-biogenesis protein NfuA [Pasteurella dagmatis ATCC 43325] gi|260632451|gb|EEX50624.1| Fe/S-biogenesis protein NfuA [Pasteurella dagmatis ATCC 43325] Length = 194 Score = 41.2 bits (95), Expect = 0.062, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ V+ ++ P +A GG I + +G L G C+GC TLK Sbjct: 103 VADDAPLIERVEYVIQTQINPQLASHGGKITLIEITNEGYAILQFGGGCNGCSMVDVTLK 162 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L+ F E+K + V Sbjct: 163 DGIEKQLLSLFPNELKGAKDV 183 >gi|217034049|ref|ZP_03439471.1| hypothetical protein HP9810_891g53 [Helicobacter pylori 98-10] gi|216943557|gb|EEC23008.1| hypothetical protein HP9810_891g53 [Helicobacter pylori 98-10] Length = 326 Score = 41.2 bits (95), Expect = 0.062, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 7/81 (8%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVF---KGYRDGI-VFLSMRGACS 159 SG+ + +VQ+IK +V++ +RP + DGGD+ K D I V++ GAC Sbjct: 237 SGELAFREMTMVQKIKAVDKVIEENIRPMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFV 180 GC SA+ + + N L + Sbjct: 297 GCMSATTGTLFAIENALQELL 317 >gi|242373742|ref|ZP_04819316.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W1] gi|242348562|gb|EES40164.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W1] Length = 84 Score = 41.2 bits (95), Expect = 0.063, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 7 DTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK- 65 +TPN T+K + + +++AKE + +R+F I G+ S+++ DFI+V K Sbjct: 8 ETPNHNTMKISLSEPRQDNSSTTYTSAKEGQ-PDFINRLFEIDGVKSIFYVMDFISVDKE 66 Query: 66 DQYDWEHLRPPVLGMIME 83 D +W+ L P + E Sbjct: 67 DDANWDDLLPQIQDAFNE 84 >gi|332299648|ref|YP_004441569.1| nitrogen-fixing NifU domain-containing protein [Porphyromonas asaccharolytica DSM 20707] gi|332176711|gb|AEE12401.1| nitrogen-fixing NifU domain-containing protein [Porphyromonas asaccharolytica DSM 20707] Length = 97 Score = 41.2 bits (95), Expect = 0.064, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 31/63 (49%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 S+ V I ++ + VRP + GGDI VF+ + G+C CPS S T++ V Sbjct: 5 SSRVDEITTIISSYVRPQLQAHGGDIALLRVAGEQVFVKVSGSCQACPSLSSTIREVVQE 64 Query: 175 ILN 177 L Sbjct: 65 TLR 67 >gi|29840661|ref|NP_829767.1| nifU protein, putative [Chlamydophila caviae GPIC] gi|29835011|gb|AAP05645.1| nifU protein, putative [Chlamydophila caviae GPIC] Length = 273 Score = 41.2 bits (95), Expect = 0.064, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +Q ++ ++++ P VA DGG ++ + IV ++ G CSGC SA + + +L Sbjct: 186 LQVLRTTAEDKISPYVAMDGGSVLIENLEGNIVTIAYAGNCSGCFSAIGSTLNSIGQLLR 245 Query: 178 HFV 180 +V Sbjct: 246 AYV 248 >gi|261840168|gb|ACX99933.1| NifU-like protein [Helicobacter pylori 52] gi|317182697|dbj|BAJ60481.1| conserved hypothetical nifU-like protein [Helicobacter pylori F57] Length = 89 Score = 41.2 bits (95), Expect = 0.065, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 34/60 (56%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 IE +Q+ ++ ++RP + +DGG+I G + +++++ GAC C S+ TLK Sbjct: 1 MIEFSDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLK 60 >gi|317177038|dbj|BAJ54827.1| nifU-like protein [Helicobacter pylori F16] Length = 326 Score = 41.2 bits (95), Expect = 0.066, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 7/81 (8%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVF---KGYRDGI-VFLSMRGACS 159 SG+ + +VQ+IK +V++ +RP + DGGD+ K D I V++ GAC Sbjct: 237 SGELAFREMTMVQKIKAVDKVIEENIRPMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFV 180 GC SA+ + + N L + Sbjct: 297 GCMSATTGTLFAIENALQELL 317 >gi|186680893|ref|YP_001864089.1| Rieske (2Fe-2S) domain-containing protein [Nostoc punctiforme PCC 73102] gi|186463345|gb|ACC79146.1| Rieske (2Fe-2S) domain protein [Nostoc punctiforme PCC 73102] Length = 281 Score = 41.2 bits (95), Expect = 0.066, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANI 175 + QRI+ L+ VRP + GD+ + V + + G CS CP+++ TL GV Sbjct: 85 LAQRIETALE-EVRPGLKSHDGDVELVAIKSPDTVEVRLIGTCSSCPASTLTLSQGVEQA 143 Query: 176 LNHFVPEVKDIRTV 189 + + PE+ + V Sbjct: 144 IKNHCPEITKVVAV 157 >gi|317180027|dbj|BAJ57813.1| nifU-like protein [Helicobacter pylori F32] Length = 326 Score = 41.2 bits (95), Expect = 0.066, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 7/81 (8%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVF---KGYRDGI-VFLSMRGACS 159 SG+ + +VQ+IK +V++ +RP + DGGD+ K D I V++ GAC Sbjct: 237 SGELAFREMTMVQKIKAVDKVIEENIRPMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFV 180 GC SA+ + + N L + Sbjct: 297 GCMSATTGTLFAIENALQELL 317 >gi|188528263|ref|YP_001910950.1| conserved hypothetical nifU-like protein [Helicobacter pylori Shi470] gi|308183595|ref|YP_003927722.1| conserved hypothetical nifU-like protein [Helicobacter pylori PeCan4] gi|188144503|gb|ACD48920.1| conserved hypothetical nifU-like protein [Helicobacter pylori Shi470] gi|297380653|gb|ADI35540.1| Hypothetical protein HPV225_1523 [Helicobacter pylori v225d] gi|308062756|gb|ADO04644.1| conserved hypothetical nifU-like protein [Helicobacter pylori Cuz20] gi|308064252|gb|ADO06139.1| conserved hypothetical nifU-like protein [Helicobacter pylori Sat464] gi|308065780|gb|ADO07672.1| conserved hypothetical nifU-like protein [Helicobacter pylori PeCan4] gi|317181175|dbj|BAJ58961.1| conserved hypothetical nifU-like protein [Helicobacter pylori F32] Length = 89 Score = 41.2 bits (95), Expect = 0.066, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 34/60 (56%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 IE +Q+ ++ ++RP + +DGG+I G + +++++ GAC C S+ TLK Sbjct: 1 MIEFSDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLK 60 >gi|330827871|ref|YP_004390823.1| Fe/S biogenesis protein nfuA [Aeromonas veronii B565] gi|328803007|gb|AEB48206.1| Fe/S biogenesis protein nfuA [Aeromonas veronii B565] Length = 192 Score = 41.2 bits (95), Expect = 0.067, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++RI+ VL + V P +A GG + + D + L G C+GC TLK Sbjct: 101 VADDAPLIERIEYVLMSEVNPMLAGHGGKVTLVELTEDKLAILQFGGGCNGCSMVDYTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ ++ Sbjct: 161 EGIEKQLLEKFPGELNGVK 179 >gi|317179382|dbj|BAJ57170.1| nifU-like protein [Helicobacter pylori F30] Length = 326 Score = 41.2 bits (95), Expect = 0.067, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 7/81 (8%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVF---KGYRDGI-VFLSMRGACS 159 SG+ + +VQ+IK +V++ +RP + DGGD+ K D I V++ GAC Sbjct: 237 SGELAFREMTMVQKIKAVDKVIEENIRPMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFV 180 GC SA+ + + N L + Sbjct: 297 GCMSATTGTLFAIENALQELL 317 >gi|119509243|ref|ZP_01628393.1| Nitrogen-fixing NifU-like protein [Nodularia spumigena CCY9414] gi|119466085|gb|EAW46972.1| Nitrogen-fixing NifU-like protein [Nodularia spumigena CCY9414] Length = 277 Score = 41.2 bits (95), Expect = 0.067, Method: Compositional matrix adjust. Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGV 172 + +++RI L+ VRP + GD+ F + V + + G+CS CP+++ TL V Sbjct: 82 QAPLIERINTALE-EVRPGLKSHDGDVEFVAIKPPDTVEVKLIGSCSSCPTSTLTLTQSV 140 Query: 173 ANILNHFVPEVKDIRTV 189 + + PE+ + V Sbjct: 141 EQAIKNHCPEITKVVAV 157 >gi|220904348|ref|YP_002479660.1| Fe-S cluster assembly protein NifU [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868647|gb|ACL48982.1| Fe-S cluster assembly protein NifU [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 278 Score = 41.2 bits (95), Expect = 0.068, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 4/70 (5%) Query: 118 VQRIKEVL---DNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 VQR++ VL + +RP +A DGGDI V +S+RG CS C ++ T++ V Sbjct: 204 VQRMQLVLKTIEEEIRPVLAADGGDIELVDVDGLRVVVSLRGRCSQCRASDVTIRDLVQR 263 Query: 175 IL-NHFVPEV 183 +L H P++ Sbjct: 264 LLREHVEPDI 273 >gi|34558480|ref|NP_908295.1| NIFU-like protein [Wolinella succinogenes DSM 1740] gi|34484199|emb|CAE11195.1| NIFU-LIKE PROTEIN [Wolinella succinogenes] Length = 327 Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 8/86 (9%) Query: 101 KLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGD---IVFKGYRDGIVFLSM 154 + D SG+ ++ ++VQ++K +V+D+ +RP + DGG+ I + DG + + Sbjct: 231 QADKSASGELGFNEMSMVQKVKAVDKVIDDNIRPMLMMDGGNMEVIDIRSSSDGHTDIYI 290 Query: 155 R--GACSGCPSASETLKYGVANILNH 178 R GAC+GC S+S + + ++L Sbjct: 291 RYVGACAGCASSSTGTLFAIESVLQQ 316 >gi|51701987|sp|Q7MPY4|NFUA_VIBVY RecName: Full=Fe/S biogenesis protein nfuA gi|51702011|sp|Q8DDU2|NFUA_VIBVU RecName: Full=Fe/S biogenesis protein nfuA Length = 194 Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ + +V P +A GG + D G+ ++ G C+GC TLK Sbjct: 103 VADDAPLLERVEYAIQTQVNPQLAGHGGHVKLMEITDAGVAIVAFGGGCNGCSMVDVTLK 162 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ +R Sbjct: 163 EGIEKELLQQFSGELTAVR 181 >gi|323697813|ref|ZP_08109725.1| Fe-S cluster assembly protein NifU [Desulfovibrio sp. ND132] gi|323457745|gb|EGB13610.1| Fe-S cluster assembly protein NifU [Desulfovibrio desulfuricans ND132] Length = 284 Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Query: 118 VQR---IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 +QR I+ V+D VRP + DGG+I V + G CSGCPS+ TL+ V Sbjct: 210 IQRMHLIERVIDEDVRPKLKADGGNIELVDIDRDAVVVRFLGMCSGCPSSRATLEGLVET 269 Query: 175 ILNHFV 180 L V Sbjct: 270 ALREKV 275 >gi|262372009|ref|ZP_06065288.1| iron-sulfur cluster biosynthesis family protein [Acinetobacter junii SH205] gi|262312034|gb|EEY93119.1| iron-sulfur cluster biosynthesis family protein [Acinetobacter junii SH205] Length = 212 Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D+++ +RI VL + + P + GG+ ++ L G C GC + TL Sbjct: 120 DASIEERITYVLQSEINPGLEGHGGNCSLVEVQNDPEHGLTAVLKFGGGCQGCSAIDVTL 179 Query: 169 KYGVANILNHFVPEVKDI 186 K GV L VPE++ + Sbjct: 180 KQGVETTLKQHVPELQRV 197 >gi|109948219|ref|YP_665447.1| hypothetical protein Hac_1752 [Helicobacter acinonychis str. Sheeba] gi|109715440|emb|CAK00448.1| conserved hypothetical protein [Helicobacter acinonychis str. Sheeba] Length = 89 Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 27/42 (64%) Query: 128 RVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 ++RP + +DGG+I G + +++++ GAC C S+ TLK Sbjct: 19 KIRPYLLKDGGNIEVLGIKSMKIYVTLEGACKTCSSSKITLK 60 >gi|86153596|ref|ZP_01071799.1| NifU family protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842557|gb|EAQ59769.1| NifU family protein [Campylobacter jejuni subsp. jejuni HB93-13] Length = 323 Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDI----VFKGYRDGI-VFLSMRGACSGCPSASETLKYGV 172 ++ ++ VLD +RP + DGGD+ + K I V++ GACSGC S S Y + Sbjct: 247 LKAVESVLDAEIRPMLHNDGGDLEVIDIQKAEGAAIDVYIRYLGACSGCSSGSGATLYAI 306 Query: 173 ANILNH 178 IL Sbjct: 307 ETILQE 312 >gi|283955663|ref|ZP_06373156.1| nifU-like protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792888|gb|EFC31664.1| nifU-like protein [Campylobacter jejuni subsp. jejuni 1336] Length = 323 Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDI----VFKGYRDGI-VFLSMRGACSGCPSASETLKYGV 172 ++ ++ VLD +RP + DGGD+ + K I V++ GACSGC S S Y + Sbjct: 247 LKAVESVLDAEIRPMLHNDGGDLEVIDIQKAEGAAIDVYIRYLGACSGCSSGSGATLYAI 306 Query: 173 ANILNH 178 IL Sbjct: 307 ETILQE 312 >gi|57237299|ref|YP_178312.1| NifU family protein [Campylobacter jejuni RM1221] gi|88597232|ref|ZP_01100467.1| NifU family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|121613377|ref|YP_999952.1| NifU family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|157414537|ref|YP_001481793.1| NifU family protein [Campylobacter jejuni subsp. jejuni 81116] gi|167004909|ref|ZP_02270667.1| nifU-like protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205356531|ref|ZP_03223294.1| NifU protein [Campylobacter jejuni subsp. jejuni CG8421] gi|218561903|ref|YP_002343682.1| NifU protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|57166103|gb|AAW34882.1| NifU family protein [Campylobacter jejuni RM1221] gi|87250262|gb|EAQ73220.1| NifU family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|88190293|gb|EAQ94267.1| NifU family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112359609|emb|CAL34394.1| NifU protein homolog [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|157385501|gb|ABV51816.1| nifU-like protein [Campylobacter jejuni subsp. jejuni 81116] gi|205345536|gb|EDZ32176.1| NifU protein [Campylobacter jejuni subsp. jejuni CG8421] gi|284925515|gb|ADC27867.1| NifU family protein [Campylobacter jejuni subsp. jejuni IA3902] gi|307747179|gb|ADN90449.1| NifU family protein [Campylobacter jejuni subsp. jejuni M1] gi|315928167|gb|EFV07485.1| nitrogen fixation protein nifU [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315932037|gb|EFV10990.1| Nitrogen fixation protein NifU [Campylobacter jejuni subsp. jejuni 327] Length = 323 Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDI----VFKGYRDGI-VFLSMRGACSGCPSASETLKYGV 172 ++ ++ VLD +RP + DGGD+ + K I V++ GACSGC S S Y + Sbjct: 247 LKAVESVLDAEIRPMLHNDGGDLEVIDIQKAEGAAIDVYIRYLGACSGCSSGSGATLYAI 306 Query: 173 ANILNH 178 IL Sbjct: 307 ETILQE 312 >gi|223043286|ref|ZP_03613333.1| conserved virulence factor C [Staphylococcus capitis SK14] gi|314933620|ref|ZP_07840985.1| scaffold protein Nfu/NifU N [Staphylococcus caprae C87] gi|222443497|gb|EEE49595.1| conserved virulence factor C [Staphylococcus capitis SK14] gi|313653770|gb|EFS17527.1| scaffold protein Nfu/NifU N [Staphylococcus caprae C87] Length = 84 Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Query: 7 DTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK- 65 +TPN T+K + + +++AKE + +R+F I G+ S+++ DFI+V K Sbjct: 8 ETPNHNTMKISLSEPRQDNSSTTYTSAKEGQ-PEFINRLFDIDGVKSIFYVMDFISVDKE 66 Query: 66 DQYDWEHLRPPV 77 D +W+ L P + Sbjct: 67 DDANWDDLLPQI 78 >gi|327479981|gb|AEA83291.1| Fe-S cluster assembly protein NifU [Pseudomonas stutzeri DSM 4166] Length = 316 Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 ++R++ VL++ +RP + RD GD+ +++ + GAC+GC AS TL Sbjct: 236 IRRVERVLES-IRPTLQRDHGDVELLDVEGKNIYVKLTGACTGCQMASMTL 285 >gi|261884718|ref|ZP_06008757.1| nitrogen fixation protein NifU [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 162 Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Query: 118 VQRIKEVLDNRVRPAVARDGGDI----VFKGYRDGIVFLSMR--GACSGCPSASETLKYG 171 ++ ++ V+D +RP + DGG++ + K DG + + +R GACSGC S + Y Sbjct: 85 LKAVEAVIDENIRPMLVMDGGNMEILDIKKEDADGKIDIYIRYLGACSGCASGATGTLYA 144 Query: 172 VANILN-HFVPEVK 184 + NIL + P ++ Sbjct: 145 IENILQENLSPNIR 158 >gi|229496013|ref|ZP_04389737.1| NifU-related protein [Porphyromonas endodontalis ATCC 35406] gi|229317105|gb|EEN83014.1| NifU-related protein [Porphyromonas endodontalis ATCC 35406] Length = 104 Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 ++EVL+ RV P +A GG + +G + ++ +GAC+ CPS +ET+ V L Sbjct: 8 VQEVLETRVAPQLALHGGGVKLCSISPEGDIRVAFKGACATCPSMTETMDALVMGQLRAA 67 Query: 180 VPEV 183 P+ Sbjct: 68 FPDT 71 >gi|229085150|ref|ZP_04217397.1| hypothetical protein bcere0022_17700 [Bacillus cereus Rock3-44] gi|228698131|gb|EEL50869.1| hypothetical protein bcere0022_17700 [Bacillus cereus Rock3-44] Length = 375 Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + +I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENTEQAPEQVQQILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|229102807|ref|ZP_04233503.1| hypothetical protein bcere0019_19610 [Bacillus cereus Rock3-28] gi|228680592|gb|EEL34773.1| hypothetical protein bcere0019_19610 [Bacillus cereus Rock3-28] Length = 375 Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLSSGARNNYTNENKEQAPVQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|27364312|ref|NP_759840.1| Fe/S biogenesis protein NfuA [Vibrio vulnificus CMCP6] gi|320157704|ref|YP_004190083.1| NfuA Fe-S protein maturation [Vibrio vulnificus MO6-24/O] gi|27360430|gb|AAO09367.1| Protein gntY [Vibrio vulnificus CMCP6] gi|319933016|gb|ADV87880.1| NfuA, Fe-S protein maturation [Vibrio vulnificus MO6-24/O] Length = 207 Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ + +V P +A GG + D G+ ++ G C+GC TLK Sbjct: 116 VADDAPLLERVEYAIQTQVNPQLAGHGGHVKLMEITDAGVAIVAFGGGCNGCSMVDVTLK 175 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ +R Sbjct: 176 EGIEKELLQQFSGELTAVR 194 >gi|300785672|ref|YP_003765963.1| thioredoxin-like protein [Amycolatopsis mediterranei U32] gi|299795186|gb|ADJ45561.1| thioredoxin-like protein [Amycolatopsis mediterranei U32] Length = 174 Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 R++ LD R+RP V G + + G DG+V LS+ GA GC SA+ T + V + Sbjct: 88 RVRRALD-RIRPQV----GAVGYLGIDDGVVRLSL-GASRGCSSAARTARATVEAAVRDA 141 Query: 180 VPEVKDIRTV 189 PEV + V Sbjct: 142 APEVSGVEIV 151 >gi|148926387|ref|ZP_01810071.1| nifU protein like protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145844779|gb|EDK21884.1| nifU protein like protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 317 Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDI----VFKGYRDGI-VFLSMRGACSGCPSASETLKYGV 172 ++ ++ VLD +RP + DGGD+ + K I V++ GACSGC S S Y + Sbjct: 241 LKAVESVLDAEIRPMLHNDGGDLEVIDIQKAEGAAIDVYIRYLGACSGCSSGSGATLYAI 300 Query: 173 ANILNH 178 IL Sbjct: 301 ETILQE 306 >gi|313887418|ref|ZP_07821107.1| NifU-like protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923060|gb|EFR33880.1| NifU-like protein [Porphyromonas asaccharolytica PR426713P-I] Length = 97 Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 31/63 (49%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 S+ V I ++ + VRP + GGDI VF+ + G+C CPS S T++ V Sbjct: 5 SSRVDEITTIISSYVRPQLQAHGGDIALLRVAGEEVFVKVSGSCQACPSLSSTIREVVQE 64 Query: 175 ILN 177 L Sbjct: 65 TLR 67 >gi|57168365|ref|ZP_00367499.1| nifU protein homolog Cj0239c [Campylobacter coli RM2228] gi|305432781|ref|ZP_07401940.1| NifU family protein [Campylobacter coli JV20] gi|57020173|gb|EAL56847.1| nifU protein homolog Cj0239c [Campylobacter coli RM2228] gi|304444178|gb|EFM36832.1| NifU family protein [Campylobacter coli JV20] Length = 323 Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDI----VFKGYRDGI-VFLSMRGACSGCPSASETLKYGV 172 ++ ++ VLD +RP + DGGD+ + K I V++ GACSGC S S Y + Sbjct: 247 LKAVESVLDAEIRPMLHNDGGDLEVIDIQKAEGAAIDVYIRYLGACSGCSSGSGATLYAI 306 Query: 173 ANILNH 178 IL Sbjct: 307 ETILQE 312 >gi|315928505|gb|EFV07809.1| nitrogen fixation protein nifU [Campylobacter jejuni subsp. jejuni 305] Length = 286 Score = 40.8 bits (94), Expect = 0.080, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDI----VFKGYRDGI-VFLSMRGACSGCPSASETLKYGV 172 ++ ++ VLD +RP + DGGD+ + K I V++ GACSGC S S Y + Sbjct: 210 LKAVESVLDAEIRPMLHNDGGDLEVIDIQKAEGAAIDVYIRYLGACSGCSSGSGATLYAI 269 Query: 173 ANILNH 178 IL Sbjct: 270 ETILQE 275 >gi|86151274|ref|ZP_01069489.1| NifU family protein [Campylobacter jejuni subsp. jejuni 260.94] gi|315123826|ref|YP_004065830.1| NifU family protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841621|gb|EAQ58868.1| NifU family protein [Campylobacter jejuni subsp. jejuni 260.94] gi|315017548|gb|ADT65641.1| NifU family protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 323 Score = 40.8 bits (94), Expect = 0.080, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDI----VFKGYRDGI-VFLSMRGACSGCPSASETLKYGV 172 ++ ++ VLD +RP + DGGD+ + K I V++ GACSGC S S Y + Sbjct: 247 LKAVESVLDAEIRPMLHNDGGDLEVIDIQKAEGAAIDVYIRYLGACSGCSSGSGATLYAI 306 Query: 173 ANILNH 178 IL Sbjct: 307 ETILQE 312 >gi|86149607|ref|ZP_01067837.1| NifU family protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839875|gb|EAQ57134.1| NifU family protein [Campylobacter jejuni subsp. jejuni CF93-6] Length = 323 Score = 40.8 bits (94), Expect = 0.080, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDI----VFKGYRDGI-VFLSMRGACSGCPSASETLKYGV 172 ++ ++ VLD +RP + DGGD+ + K I V++ GACSGC S S Y + Sbjct: 247 LKAVESVLDAEIRPMLHNDGGDLEVIDIQKAEGAAIDVYIRYLGACSGCSSGSGATLYAI 306 Query: 173 ANILNH 178 IL Sbjct: 307 ETILQE 312 >gi|15612450|ref|NP_224103.1| NifU-like protein [Helicobacter pylori J99] gi|15646101|ref|NP_208283.1| NifU-like protein [Helicobacter pylori 26695] gi|207092454|ref|ZP_03240241.1| NifU-like protein [Helicobacter pylori HPKX_438_AG0C1] gi|208435360|ref|YP_002267026.1| conserved hypothetical nifU-like protein [Helicobacter pylori G27] gi|210135659|ref|YP_002302098.1| nifu-like protein [Helicobacter pylori P12] gi|217031837|ref|ZP_03437340.1| hypothetical protein HPB128_199g45 [Helicobacter pylori B128] gi|254780002|ref|YP_003058109.1| putative nifU-like protein [Helicobacter pylori B38] gi|298735538|ref|YP_003728059.1| thioredoxin-like protein [Helicobacter pylori B8] gi|308185262|ref|YP_003929395.1| putative nifU-like protein [Helicobacter pylori SJM180] gi|2314672|gb|AAD08534.1| conserved hypothetical nifU-like protein [Helicobacter pylori 26695] gi|4156005|gb|AAD06966.1| putative [Helicobacter pylori J99] gi|208433289|gb|ACI28160.1| conserved hypothetical nifU-like protein [Helicobacter pylori G27] gi|210133627|gb|ACJ08618.1| nifu-like protein [Helicobacter pylori P12] gi|216946489|gb|EEC25091.1| hypothetical protein HPB128_199g45 [Helicobacter pylori B128] gi|254001915|emb|CAX30168.1| Putative nifU-like protein [Helicobacter pylori B38] gi|298354723|emb|CBI65595.1| thioredoxin-like protein [Helicobacter pylori B8] gi|307638148|gb|ADN80598.1| NifU like protein [Helicobacter pylori 908] gi|308061182|gb|ADO03078.1| putative nifU-like protein [Helicobacter pylori SJM180] gi|317010134|gb|ADU80714.1| putative nifU-like protein [Helicobacter pylori India7] gi|317011627|gb|ADU85374.1| putative nifU-like protein [Helicobacter pylori SouthAfrica7] gi|317013262|gb|ADU83870.1| putative nifU-like protein [Helicobacter pylori Lithuania75] gi|317014907|gb|ADU82343.1| putative nifU-like protein [Helicobacter pylori Gambia94/24] gi|325996747|gb|ADZ52152.1| NifU like protein [Helicobacter pylori 2018] gi|325998342|gb|ADZ50550.1| NifU like protein [Helicobacter pylori 2017] Length = 89 Score = 40.8 bits (94), Expect = 0.080, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 34/60 (56%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 IE +Q+ ++ ++RP + +DGG+I G + +++++ GAC C S+ TLK Sbjct: 1 MIEFSDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLK 60 >gi|315930881|gb|EFV09868.1| nitrogen fixation protein nifU [Campylobacter jejuni subsp. jejuni 305] Length = 323 Score = 40.8 bits (94), Expect = 0.081, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDI----VFKGYRDGI-VFLSMRGACSGCPSASETLKYGV 172 ++ ++ VLD +RP + DGGD+ + K I V++ GACSGC S S Y + Sbjct: 247 LKAVESVLDAEIRPMLHNDGGDLEVIDIQKAEGAAIDVYIRYLGACSGCSSGSGATLYAI 306 Query: 173 ANILNH 178 IL Sbjct: 307 ETILQE 312 >gi|228469892|ref|ZP_04054831.1| Fe-S cluster assembly protein NifU [Porphyromonas uenonis 60-3] gi|228308527|gb|EEK17315.1| Fe-S cluster assembly protein NifU [Porphyromonas uenonis 60-3] Length = 97 Score = 40.8 bits (94), Expect = 0.081, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 31/63 (49%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 S+ V I ++ + VRP + GGDI VF+ + G+C CPS S T++ V Sbjct: 5 SSRVDEITTIISSYVRPQLLAHGGDIALLRVAGEQVFVKVSGSCQACPSLSSTIQEVVQE 64 Query: 175 ILN 177 L Sbjct: 65 TLR 67 >gi|153951672|ref|YP_001397468.1| NifU family protein [Campylobacter jejuni subsp. doylei 269.97] gi|152939118|gb|ABS43859.1| NifU family protein [Campylobacter jejuni subsp. doylei 269.97] Length = 323 Score = 40.8 bits (94), Expect = 0.082, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDI----VFKGYRDGI-VFLSMRGACSGCPSASETLKYGV 172 ++ ++ VLD +RP + DGGD+ + K I V++ GACSGC S S Y + Sbjct: 247 LKAVESVLDAEIRPMLHNDGGDLEVIDIQKAEGAAIDVYIRYLGACSGCSSGSGATLYAI 306 Query: 173 ANILNH 178 IL Sbjct: 307 ETILQE 312 >gi|229544329|ref|ZP_04433388.1| HEAT domain containing protein [Bacillus coagulans 36D1] gi|229325468|gb|EEN91144.1| HEAT domain containing protein [Bacillus coagulans 36D1] Length = 374 Score = 40.8 bits (94), Expect = 0.082, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K + + + ++ +E + P+ RI I G+ VY DF+ V + Sbjct: 7 EPTPSPNTMKVVLTEALPDGARSNYKKGQEEGVPPVIRRILDIEGVKGVYHVADFLAVER 66 Query: 66 D-QYDWEHLRPPV 77 + DW+ + P V Sbjct: 67 HGKTDWQDILPKV 79 >gi|108563846|ref|YP_628162.1| NifU-like protein [Helicobacter pylori HPAG1] gi|107837619|gb|ABF85488.1| conserved hypothetical nifU-like protein [Helicobacter pylori HPAG1] Length = 89 Score = 40.8 bits (94), Expect = 0.083, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 34/60 (56%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 IE +Q+ ++ ++RP + +DGG+I G + +++++ GAC C S+ TLK Sbjct: 1 MIEFSDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLK 60 >gi|118474257|ref|YP_892817.1| nitrogen fixation protein NifU [Campylobacter fetus subsp. fetus 82-40] gi|118413483|gb|ABK81903.1| nitrogen fixation protein NifU [Campylobacter fetus subsp. fetus 82-40] Length = 333 Score = 40.8 bits (94), Expect = 0.084, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 118 VQRIKEVLDNRVRPAVARDGGDI----VFKGYRDGIVFLSMR--GACSGCPSASETLKYG 171 ++ ++ V+D +RP + DGG++ + K DG + + +R GACSGC S + Y Sbjct: 256 LKAVEAVIDENIRPMLVMDGGNMEILDIKKEDADGKIDIYIRYLGACSGCASGATGTLYA 315 Query: 172 VANILNH 178 + NIL Sbjct: 316 IENILQE 322 >gi|329943243|ref|ZP_08292017.1| nifU-like domain protein [Chlamydophila psittaci Cal10] gi|332287822|ref|YP_004422723.1| putative NifU-related protein [Chlamydophila psittaci 6BC] gi|313848394|emb|CBY17398.1| putative NifU-related protein [Chlamydophila psittaci RD1] gi|325506999|gb|ADZ18637.1| putative NifU-related protein [Chlamydophila psittaci 6BC] gi|328814790|gb|EGF84780.1| nifU-like domain protein [Chlamydophila psittaci Cal10] gi|328915082|gb|AEB55915.1| NifU-like protein [Chlamydophila psittaci 6BC] Length = 273 Score = 40.8 bits (94), Expect = 0.085, Method: Compositional matrix adjust. Identities = 16/63 (25%), Positives = 35/63 (55%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + ++ + ++++ P VA DGG ++ + + +V ++ G CSGC SA + + +L Sbjct: 186 LHALRTITEDKISPYVALDGGSVLIEKLEENVVTIAYAGNCSGCFSAIGSTLNSIGQLLR 245 Query: 178 HFV 180 +V Sbjct: 246 AYV 248 >gi|219871269|ref|YP_002475644.1| putative DNA uptake protein [Haemophilus parasuis SH0165] gi|219691473|gb|ACL32696.1| putative DNA uptake protein, cytoplasmic protein [Haemophilus parasuis SH0165] Length = 194 Score = 40.8 bits (94), Expect = 0.085, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 5/81 (6%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ ++R+ V+ +V P +A GG + + D L G C+GC TLK Sbjct: 103 VADDAPFIERLDYVIQTQVNPQLASHGGRVTLIEVTEDKYAVLQFGGGCNGCSMVDVTLK 162 Query: 170 YGVANILNHFVPE----VKDI 186 G+ L PE VKD+ Sbjct: 163 EGIEKQLLALFPEELVGVKDV 183 >gi|15603422|ref|NP_246496.1| putative DNA uptake protein [Pasteurella multocida subsp. multocida str. Pm70] gi|51702139|sp|Q9CKP9|NFUA_PASMU RecName: Full=Fe/S biogenesis protein nfuA gi|12721948|gb|AAK03641.1| OrfG [Pasteurella multocida subsp. multocida str. Pm70] Length = 194 Score = 40.8 bits (94), Expect = 0.086, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ V+ ++ P +A GG I + DG L G C+GC TLK Sbjct: 103 VADDAPLLERVEYVIQTQINPQLAGHGGRITLIEITEDGYAILQFGGGCNGCSMVDVTLK 162 Query: 170 YGVANILNHFVP 181 G+ L P Sbjct: 163 DGIEKQLLSLFP 174 >gi|257453557|ref|ZP_05618847.1| IscR-regulated protein YhgI [Enhydrobacter aerosaccus SK60] gi|257449015|gb|EEV23968.1| IscR-regulated protein YhgI [Enhydrobacter aerosaccus SK60] Length = 205 Score = 40.8 bits (94), Expect = 0.087, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 5/78 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKG--YRDGI---VFLSMRGACSGCPSASETL 168 ++++ +RI VL + + P +A GG++ + +G+ L G C GC + TL Sbjct: 113 NASLEERINYVLSSEINPNLASHGGNVQLVDLVHEEGVGITAVLKFGGGCQGCSAVDMTL 172 Query: 169 KYGVANILNHFVPEVKDI 186 K GV L +PE+ + Sbjct: 173 KQGVEVSLKQQIPELTQV 190 >gi|294498750|ref|YP_003562450.1| hypothetical protein BMQ_1987 [Bacillus megaterium QM B1551] gi|294348687|gb|ADE69016.1| conserved hypothetical protein [Bacillus megaterium QM B1551] Length = 374 Score = 40.8 bits (94), Expect = 0.087, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 3/85 (3%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISP-LASRIFSIPGIASVYFGYDFITVG 64 E TP+P T+K I VL G + K AE +P + I + G+ VY DF+ V Sbjct: 7 EPTPSPNTMK-INLDEVLSGGKSNNYTEKNAEAAPEVVQDILKVEGVKGVYHVADFLAVE 65 Query: 65 KD-QYDWEHLRPPVLGMIMEHFISG 88 ++ +YDW+ + P V E S Sbjct: 66 RNAKYDWKQILPQVRAAFGEDLQSN 90 >gi|84999846|ref|XP_954644.1| Nifu-like protein [Theileria annulata] gi|65305642|emb|CAI73967.1| Nifu-like protein, putative [Theileria annulata] Length = 150 Score = 40.8 bits (94), Expect = 0.088, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + +++V D +RP ++ DGG I D +++ G+C GCP S TLK + + L Sbjct: 73 TKNVEDVFD-LIRPQLSSDGGGINLCKIVDNEIYVKFTGSCVGCPYRSTTLKELIESNLV 131 Query: 178 HFV 180 F+ Sbjct: 132 KFI 134 >gi|196033826|ref|ZP_03101237.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus W] gi|228945797|ref|ZP_04108143.1| hypothetical protein bthur0007_19530 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195993506|gb|EDX57463.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus W] gi|228813862|gb|EEM60137.1| hypothetical protein bthur0007_19530 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 375 Score = 40.8 bits (94), Expect = 0.089, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKKQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|228927253|ref|ZP_04090315.1| hypothetical protein bthur0010_19660 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121739|ref|ZP_04250961.1| hypothetical protein bcere0016_20390 [Bacillus cereus 95/8201] gi|228661714|gb|EEL17332.1| hypothetical protein bcere0016_20390 [Bacillus cereus 95/8201] gi|228832400|gb|EEM77975.1| hypothetical protein bthur0010_19660 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 375 Score = 40.8 bits (94), Expect = 0.090, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|150025719|ref|YP_001296545.1| NifU-like protein [Flavobacterium psychrophilum JIP02/86] gi|149772260|emb|CAL43736.1| NifU-like protein [Flavobacterium psychrophilum JIP02/86] Length = 79 Score = 40.8 bits (94), Expect = 0.090, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 128 RVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +RP + DGGDI D V + ++GAC+ C + T++ GV + + P+++ + Sbjct: 16 EIRPFLNSDGGDIELVSIEDSKHVKVRLQGACNSCSVSQMTMRAGVETTIKKYAPQIETV 75 >gi|228907934|ref|ZP_04071785.1| hypothetical protein bthur0013_20980 [Bacillus thuringiensis IBL 200] gi|228851693|gb|EEM96496.1| hypothetical protein bthur0013_20980 [Bacillus thuringiensis IBL 200] Length = 375 Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|260770783|ref|ZP_05879712.1| protein gntY [Vibrio furnissii CIP 102972] gi|260614020|gb|EEX39210.1| protein gntY [Vibrio furnissii CIP 102972] gi|315178824|gb|ADT85738.1| predicted gluconate transport-associated protein [Vibrio furnissii NCTC 11218] Length = 166 Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ + +V P +A GG + + + DG+ + G C+GC TLK Sbjct: 75 VADDAPLMERVEYAIQTQVNPQLAGHGGHVQLLEISDDGVALVQFGGGCNGCSMVDVTLK 134 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ +R Sbjct: 135 EGIEKELLAQFEGELTAVR 153 >gi|228900795|ref|ZP_04065010.1| hypothetical protein bthur0014_19970 [Bacillus thuringiensis IBL 4222] gi|228858721|gb|EEN03166.1| hypothetical protein bthur0014_19970 [Bacillus thuringiensis IBL 4222] Length = 375 Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|229029909|ref|ZP_04185978.1| hypothetical protein bcere0028_19920 [Bacillus cereus AH1271] gi|228731417|gb|EEL82330.1| hypothetical protein bcere0028_19920 [Bacillus cereus AH1271] Length = 375 Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|218233107|ref|YP_002366894.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus B4264] gi|229150427|ref|ZP_04278643.1| hypothetical protein bcere0011_19780 [Bacillus cereus m1550] gi|218161064|gb|ACK61056.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus B4264] gi|228632920|gb|EEK89533.1| hypothetical protein bcere0011_19780 [Bacillus cereus m1550] Length = 375 Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|228955951|ref|ZP_04117887.1| hypothetical protein bthur0006_52700 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229069733|ref|ZP_04203018.1| hypothetical protein bcere0025_19360 [Bacillus cereus F65185] gi|229079371|ref|ZP_04211913.1| hypothetical protein bcere0023_20260 [Bacillus cereus Rock4-2] gi|229178571|ref|ZP_04305935.1| hypothetical protein bcere0005_19290 [Bacillus cereus 172560W] gi|229190288|ref|ZP_04317289.1| hypothetical protein bcere0002_19560 [Bacillus cereus ATCC 10876] gi|228593072|gb|EEK50890.1| hypothetical protein bcere0002_19560 [Bacillus cereus ATCC 10876] gi|228604729|gb|EEK62186.1| hypothetical protein bcere0005_19290 [Bacillus cereus 172560W] gi|228703904|gb|EEL56348.1| hypothetical protein bcere0023_20260 [Bacillus cereus Rock4-2] gi|228713354|gb|EEL65244.1| hypothetical protein bcere0025_19360 [Bacillus cereus F65185] gi|228803731|gb|EEM50414.1| hypothetical protein bthur0006_52700 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 375 Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|30020290|ref|NP_831921.1| HEAT repeat-containing PBS lyase [Bacillus cereus ATCC 14579] gi|206972129|ref|ZP_03233077.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus AH1134] gi|228958476|ref|ZP_04120196.1| hypothetical protein bthur0005_19820 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228965167|ref|ZP_04126261.1| hypothetical protein bthur0004_20040 [Bacillus thuringiensis serovar sotto str. T04001] gi|229109644|ref|ZP_04239230.1| hypothetical protein bcere0018_19050 [Bacillus cereus Rock1-15] gi|229127600|ref|ZP_04256589.1| hypothetical protein bcere0015_20490 [Bacillus cereus BDRD-Cer4] gi|296502773|ref|YP_003664473.1| HEAT repeat-containing PBS lyase [Bacillus thuringiensis BMB171] gi|29895840|gb|AAP09122.1| PBS lyase HEAT-like repeat [Bacillus cereus ATCC 14579] gi|206733052|gb|EDZ50226.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus AH1134] gi|228655677|gb|EEL11526.1| hypothetical protein bcere0015_20490 [Bacillus cereus BDRD-Cer4] gi|228673685|gb|EEL28943.1| hypothetical protein bcere0018_19050 [Bacillus cereus Rock1-15] gi|228794401|gb|EEM41913.1| hypothetical protein bthur0004_20040 [Bacillus thuringiensis serovar sotto str. T04001] gi|228801103|gb|EEM48000.1| hypothetical protein bthur0005_19820 [Bacillus thuringiensis serovar pakistani str. T13001] gi|296323825|gb|ADH06753.1| HEAT repeat-containing PBS lyase [Bacillus thuringiensis BMB171] Length = 375 Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|311068699|ref|YP_003973622.1| putative lyase [Bacillus atrophaeus 1942] gi|310869216|gb|ADP32691.1| putative lyase [Bacillus atrophaeus 1942] Length = 376 Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust. Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 2/99 (2%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I + + + ++ + P+ + I I G+ VY DF+ V + Sbjct: 7 EPTPSPNTMKVILTEELPAGKSNNYKPDQTEGAPPVVAEILKIEGVKGVYHVADFLAVER 66 Query: 66 D-QYDWEHLRPPVLGMI-MEHFISGDPIIHNGGLGDMKL 102 + +YDW+ + P V ME+ S + G++K+ Sbjct: 67 NARYDWKDILPQVRSAFGMENTESTESRSDQESFGEVKV 105 >gi|288957497|ref|YP_003447838.1| nitrogen fixation protein [Azospirillum sp. B510] gi|288909805|dbj|BAI71294.1| nitrogen fixation protein [Azospirillum sp. B510] Length = 307 Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%) Query: 118 VQRIKEVLD--NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 VQR+K ++ +RP + RDGGD+ +++ + GACSGC ++ T+ Sbjct: 227 VQRMKVIMSAIEEMRPQIQRDGGDVELVDIDGKDIYVRLSGACSGCSQSAGTM 279 >gi|163939978|ref|YP_001644862.1| HEAT repeat-containing PBS lyase [Bacillus weihenstephanensis KBAB4] gi|163862175|gb|ABY43234.1| PBS lyase HEAT domain protein repeat-containing protein [Bacillus weihenstephanensis KBAB4] Length = 375 Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPVQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|228920917|ref|ZP_04084255.1| hypothetical protein bthur0011_19280 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838706|gb|EEM84009.1| hypothetical protein bthur0011_19280 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 375 Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|228939316|ref|ZP_04101908.1| hypothetical protein bthur0008_19760 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972194|ref|ZP_04132809.1| hypothetical protein bthur0003_19700 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978808|ref|ZP_04139178.1| hypothetical protein bthur0002_20100 [Bacillus thuringiensis Bt407] gi|228780910|gb|EEM29118.1| hypothetical protein bthur0002_20100 [Bacillus thuringiensis Bt407] gi|228787507|gb|EEM35471.1| hypothetical protein bthur0003_19700 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820340|gb|EEM66373.1| hypothetical protein bthur0008_19760 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939892|gb|AEA15788.1| HEAT repeat-containing PBS lyase [Bacillus thuringiensis serovar chinensis CT-43] Length = 375 Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|218897171|ref|YP_002445582.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus G9842] gi|218543423|gb|ACK95817.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus G9842] Length = 375 Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|229155773|ref|ZP_04283879.1| hypothetical protein bcere0010_19650 [Bacillus cereus ATCC 4342] gi|228627759|gb|EEK84480.1| hypothetical protein bcere0010_19650 [Bacillus cereus ATCC 4342] Length = 375 Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|229043940|ref|ZP_04191635.1| hypothetical protein bcere0027_19820 [Bacillus cereus AH676] gi|228725397|gb|EEL76659.1| hypothetical protein bcere0027_19820 [Bacillus cereus AH676] Length = 375 Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|229133019|ref|ZP_04261860.1| hypothetical protein bcere0014_19450 [Bacillus cereus BDRD-ST196] gi|228650437|gb|EEL06431.1| hypothetical protein bcere0014_19450 [Bacillus cereus BDRD-ST196] Length = 375 Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPVQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|229059873|ref|ZP_04197248.1| hypothetical protein bcere0026_19810 [Bacillus cereus AH603] gi|228719418|gb|EEL71021.1| hypothetical protein bcere0026_19810 [Bacillus cereus AH603] Length = 375 Score = 40.8 bits (94), Expect = 0.100, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPVQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|229011478|ref|ZP_04168666.1| hypothetical protein bmyco0001_19280 [Bacillus mycoides DSM 2048] gi|229167043|ref|ZP_04294787.1| hypothetical protein bcere0007_20090 [Bacillus cereus AH621] gi|228616396|gb|EEK73477.1| hypothetical protein bcere0007_20090 [Bacillus cereus AH621] gi|228749769|gb|EEL99606.1| hypothetical protein bmyco0001_19280 [Bacillus mycoides DSM 2048] Length = 375 Score = 40.8 bits (94), Expect = 0.100, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPVQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|322378956|ref|ZP_08053370.1| NifU-like protein [Helicobacter suis HS1] gi|322379810|ref|ZP_08054107.1| iron-sulfur cluster assembly scaffold protein [Helicobacter suis HS5] gi|321147778|gb|EFX42381.1| iron-sulfur cluster assembly scaffold protein [Helicobacter suis HS5] gi|321148632|gb|EFX43118.1| NifU-like protein [Helicobacter suis HS1] Length = 326 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 7/83 (8%) Query: 107 SGDFIESDSAVVQRIKEV---LDNRVRPAVARDGGDIVFKGYRDG----IVFLSMRGACS 159 GD + +VQ++K + +D VRP + DGG++ ++G V++ GAC Sbjct: 237 EGDLAFQEMTMVQKVKAIDKTIDAHVRPMLMMDGGNLEILDIKEGGGFVDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFVPE 182 GC SA+ + + +L + E Sbjct: 297 GCASAASGTLFAIEGVLQDQLDE 319 >gi|118477604|ref|YP_894755.1| HEAT repeat-containing protein [Bacillus thuringiensis str. Al Hakam] gi|196046077|ref|ZP_03113305.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus 03BB108] gi|225864155|ref|YP_002749533.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus 03BB102] gi|229184411|ref|ZP_04311618.1| hypothetical protein bcere0004_19740 [Bacillus cereus BGSC 6E1] gi|118416829|gb|ABK85248.1| conserved hypothetical protein [Bacillus thuringiensis str. Al Hakam] gi|196023132|gb|EDX61811.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus 03BB108] gi|225785671|gb|ACO25888.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus 03BB102] gi|228599207|gb|EEK56820.1| hypothetical protein bcere0004_19740 [Bacillus cereus BGSC 6E1] Length = 375 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|300118122|ref|ZP_07055870.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus SJ1] gi|298724433|gb|EFI65127.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus SJ1] Length = 375 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|228985281|ref|ZP_04145444.1| hypothetical protein bthur0001_19790 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774436|gb|EEM22839.1| hypothetical protein bthur0001_19790 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 375 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|229196417|ref|ZP_04323164.1| hypothetical protein bcere0001_19760 [Bacillus cereus m1293] gi|228587054|gb|EEK45125.1| hypothetical protein bcere0001_19760 [Bacillus cereus m1293] Length = 375 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|206975315|ref|ZP_03236229.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus H3081.97] gi|217959715|ref|YP_002338267.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus AH187] gi|229138906|ref|ZP_04267485.1| hypothetical protein bcere0013_20190 [Bacillus cereus BDRD-ST26] gi|206746736|gb|EDZ58129.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus H3081.97] gi|217063358|gb|ACJ77608.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus AH187] gi|228644531|gb|EEL00784.1| hypothetical protein bcere0013_20190 [Bacillus cereus BDRD-ST26] Length = 375 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|324326222|gb|ADY21482.1| HEAT repeat-containing PBS lyase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 375 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|229074890|ref|ZP_04207899.1| hypothetical protein bcere0024_19250 [Bacillus cereus Rock4-18] gi|229096707|ref|ZP_04227678.1| hypothetical protein bcere0020_19540 [Bacillus cereus Rock3-29] gi|229115684|ref|ZP_04245089.1| hypothetical protein bcere0017_19770 [Bacillus cereus Rock1-3] gi|228667826|gb|EEL23263.1| hypothetical protein bcere0017_19770 [Bacillus cereus Rock1-3] gi|228686913|gb|EEL40820.1| hypothetical protein bcere0020_19540 [Bacillus cereus Rock3-29] gi|228708227|gb|EEL60391.1| hypothetical protein bcere0024_19250 [Bacillus cereus Rock4-18] Length = 375 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPVQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|70731021|ref|YP_260762.1| yhgI protein [Pseudomonas fluorescens Pf-5] gi|123654765|sp|Q4KAH1|NFUA_PSEF5 RecName: Full=Fe/S biogenesis protein nfuA gi|68345320|gb|AAY92926.1| yhgI protein [Pseudomonas fluorescens Pf-5] Length = 194 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETL 168 + +DS V +RI L + P +A GG + + DGI L G C GC A TL Sbjct: 103 MVNADSPVNERINYYLQTEINPGLASHGGQVSLIDVVEDGIAVLQFGGGCQGCGQADVTL 162 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ L +PE+K +R V Sbjct: 163 KEGIERTLLERIPELKGVRDV 183 >gi|89897915|ref|YP_515025.1| NifU-related protein [Chlamydophila felis Fe/C-56] gi|89331287|dbj|BAE80880.1| NifU-related protein [Chlamydophila felis Fe/C-56] Length = 273 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + ++ + + +V P A DGG + + + IV +S G CSGC SA + + +L Sbjct: 186 LHALRTIAEEKVSPYTALDGGSVFIESLEENIVTISYAGNCSGCFSAIGSTLNSIGQLLR 245 Query: 178 HFV 180 +V Sbjct: 246 AYV 248 >gi|30262187|ref|NP_844564.1| HEAT repeat-containing PBS lyase [Bacillus anthracis str. Ames] gi|49185028|ref|YP_028280.1| HEAT repeat-containing PBS lyase [Bacillus anthracis str. Sterne] gi|49481614|ref|YP_036317.1| HEAT-like repeat-containing protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|50196932|ref|YP_018814.3| HEAT repeat-containing PBS lyase [Bacillus anthracis str. 'Ames Ancestor'] gi|52143266|ref|YP_083562.1| HEAT-like repeat-containing protein [Bacillus cereus E33L] gi|167632880|ref|ZP_02391206.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. A0442] gi|170686452|ref|ZP_02877673.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. A0465] gi|170708438|ref|ZP_02898881.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. A0389] gi|177650796|ref|ZP_02933693.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. A0174] gi|190567836|ref|ZP_03020747.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis Tsiankovskii-I] gi|227815013|ref|YP_002815022.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. CDC 684] gi|228914783|ref|ZP_04078392.1| hypothetical protein bthur0012_20130 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228933499|ref|ZP_04096352.1| hypothetical protein bthur0009_19650 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229091168|ref|ZP_04222391.1| hypothetical protein bcere0021_19860 [Bacillus cereus Rock3-42] gi|229604723|ref|YP_002866540.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. A0248] gi|254684756|ref|ZP_05148616.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. CNEVA-9066] gi|254721048|ref|ZP_05182839.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. A1055] gi|254737202|ref|ZP_05194906.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. Western North America USA6153] gi|254743613|ref|ZP_05201298.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. Kruger B] gi|254751517|ref|ZP_05203554.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. Vollum] gi|254759032|ref|ZP_05211059.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. Australia 94] gi|301053702|ref|YP_003791913.1| hypothetical protein BACI_c21220 [Bacillus anthracis CI] gi|30256813|gb|AAP26050.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. Ames] gi|49178955|gb|AAT54331.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. Sterne] gi|49333170|gb|AAT63816.1| conserved hypothetical protein, HEAT-like repeat domain [Bacillus thuringiensis serovar konkukian str. 97-27] gi|50082994|gb|AAT31289.3| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. 'Ames Ancestor'] gi|51976735|gb|AAU18285.1| conserved hypothetical protein; HEAT-like repeat domain [Bacillus cereus E33L] gi|167531692|gb|EDR94357.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. A0442] gi|170126677|gb|EDS95561.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. A0389] gi|170669528|gb|EDT20270.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. A0465] gi|172083257|gb|EDT68318.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. A0174] gi|190560891|gb|EDV14865.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis Tsiankovskii-I] gi|227007149|gb|ACP16892.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. CDC 684] gi|228692299|gb|EEL46035.1| hypothetical protein bcere0021_19860 [Bacillus cereus Rock3-42] gi|228826228|gb|EEM72008.1| hypothetical protein bthur0009_19650 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228845102|gb|EEM90144.1| hypothetical protein bthur0012_20130 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229269131|gb|ACQ50768.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. A0248] gi|300375871|gb|ADK04775.1| conserved hypothetical protein [Bacillus cereus biovar anthracis str. CI] Length = 375 Score = 40.4 bits (93), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|119896844|ref|YP_932057.1| nitrogen fixation protein NifU [Azoarcus sp. BH72] gi|119669257|emb|CAL93170.1| probable nitrogen fixation protein NifU [Azoarcus sp. BH72] Length = 296 Score = 40.4 bits (93), Expect = 0.10, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 +++I++V++ + RP + RD GDI +++SM+GAC+GC + TL Sbjct: 214 IRKIEQVIE-KARPNLQRDHGDIELVDVDGKNIYVSMKGACAGCQMEAATL 263 >gi|37678411|ref|NP_933020.1| putative DNA uptake protein [Vibrio vulnificus YJ016] gi|37197150|dbj|BAC92991.1| thioredoxin-like protein [Vibrio vulnificus YJ016] Length = 227 Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ + +V P +A GG + D G+ ++ G C+GC TLK Sbjct: 136 VADDAPLLERVEYAIQTQVNPQLAGHGGHVKLMEITDAGVAIVAFGGGCNGCSMVDVTLK 195 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ +R Sbjct: 196 EGIEKELLQQFSGELTAVR 214 >gi|330808713|ref|YP_004353175.1| Fe/S biogenesis protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376821|gb|AEA68171.1| Fe/S biogenesis protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 194 Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETL 168 + +DS V +RI L + P +A GG + + DGI L G C GC A TL Sbjct: 103 MVNADSPVNERINYYLQTEINPGLASHGGQVSLIDVVEDGIAVLQFGGGCQGCGQADVTL 162 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ L +PE+K +R V Sbjct: 163 KEGIERTLLERIPELKGVRDV 183 >gi|86146559|ref|ZP_01064881.1| hypothetical protein MED222_18183 [Vibrio sp. MED222] gi|85835616|gb|EAQ53752.1| hypothetical protein MED222_18183 [Vibrio sp. MED222] Length = 194 Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ + +V P +A GG + + + +G ++ G C+GC TLK Sbjct: 103 VSDDATLIERVEYAIQTQVNPQLAGHGGHVSLVEITEEGAAIVAFGGGCNGCSMVDVTLK 162 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ +R Sbjct: 163 EGIEKELLQQFEGELTAVR 181 >gi|225619753|ref|YP_002721010.1| NifU-like N terminal domain-containing protein [Brachyspira hyodysenteriae WA1] gi|225214572|gb|ACN83306.1| NifU N, NifU-like N terminal domain protein [Brachyspira hyodysenteriae WA1] Length = 277 Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +++I+E L+ + P + DGG V + +GACS C S+ TLK V L Sbjct: 206 IKKIEEALERVINPMLKMDGGSCRLVDVDGNKVMIEFKGACSACASSKNTLKGFVEPKLQ 265 Query: 178 HFVPEVKDIRTV 189 V KD+ V Sbjct: 266 ELVS--KDLEVV 275 >gi|229144799|ref|ZP_04273196.1| hypothetical protein bcere0012_19590 [Bacillus cereus BDRD-ST24] gi|228638521|gb|EEK94954.1| hypothetical protein bcere0012_19590 [Bacillus cereus BDRD-ST24] Length = 375 Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPIQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|148976499|ref|ZP_01813195.1| predicted gluconate transport associated protein [Vibrionales bacterium SWAT-3] gi|145964075|gb|EDK29332.1| predicted gluconate transport associated protein [Vibrionales bacterium SWAT-3] Length = 194 Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ + +V P +A GG + + + DG ++ G C+GC TLK Sbjct: 103 VADDAPLLERVEYAIQTQVNPQLAGHGGHVSLVEITEDGAAIVAFGGGCNGCSMVDVTLK 162 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ +R Sbjct: 163 EGIEKELLQQFEGELTAVR 181 >gi|296125736|ref|YP_003632988.1| Fe-S cluster assembly protein NifU [Brachyspira murdochii DSM 12563] gi|296017552|gb|ADG70789.1| Fe-S cluster assembly protein NifU [Brachyspira murdochii DSM 12563] Length = 277 Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V++I+E L+ + P + DGG V + +GACS C S+ TLK V L Sbjct: 206 VKKIEEALERVINPMLKMDGGSCRLVDVDGNKVMIEFKGACSSCASSKNTLKGFVEPKLQ 265 Query: 178 HFVPEVKDIRTV 189 V KD+ V Sbjct: 266 EIVS--KDLEVV 275 >gi|221482460|gb|EEE20808.1| hypothetical protein TGGT1_065730 [Toxoplasma gondii GT1] Length = 483 Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%) Query: 121 IKEVLDNRVRPAVARDGGDI--VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +++VL++ VRP + GG++ V IV L+ +GACS CPSA +TL G+ L Sbjct: 263 VEQVLES-VRPYLRGHGGNVKLVELDSEKKIVRLAFKGACSTCPSAHQTLYEGLQGALRE 321 Query: 179 FVPEV 183 P++ Sbjct: 322 VWPDL 326 >gi|84386342|ref|ZP_00989370.1| hypothetical protein V12B01_02495 [Vibrio splendidus 12B01] gi|84378766|gb|EAP95621.1| hypothetical protein V12B01_02495 [Vibrio splendidus 12B01] Length = 194 Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ + +V P +A GG + + + +G ++ G C+GC TLK Sbjct: 103 VSDDATLIERVEYAIQTQVNPQLAGHGGHVSLVEITEEGAAIVAFGGGCNGCSMVDVTLK 162 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ +R Sbjct: 163 EGIEKELLQQFEGELTAVR 181 >gi|223040071|ref|ZP_03610352.1| NifU family protein [Campylobacter rectus RM3267] gi|222878657|gb|EEF13757.1| NifU family protein [Campylobacter rectus RM3267] Length = 330 Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 5/66 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGI----VFLSMRGACSGCPSASETLKYGV 172 ++ I+ V+D ++RP + DGG++ + +D V++ GACSGC S + Y + Sbjct: 254 LKAIESVIDEQIRPMLMMDGGNMEILDLQKDAEGKFDVYIRYMGACSGCASGATGTLYAI 313 Query: 173 ANILNH 178 N+L Sbjct: 314 ENVLQE 319 >gi|118580432|ref|YP_901682.1| Fe-S cluster assembly protein NifU [Pelobacter propionicus DSM 2379] gi|118503142|gb|ABK99624.1| Fe-S cluster assembly protein NifU [Pelobacter propionicus DSM 2379] Length = 290 Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 S+ +Q I+EVL+ +RP + DGGD+ V ++ R AC+GC S+ T + V Sbjct: 213 SNMKRMQMIQEVLERDIRPLLWADGGDLELIDIDGPKVQVAFRKACAGCASSGNTARM-V 271 Query: 173 ANILNHFVPE 182 + L V E Sbjct: 272 EHKLRDLVAE 281 >gi|157804286|gb|ABV79889.1| NifU [Anabaena siamensis TISTR 8012] Length = 195 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 29/52 (55%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 I++VLD VR + DGGD+ V + ++GAC C S++ TLK + Sbjct: 127 IQKVLDEEVRLVLIADGGDVELYDIEGDKVKVKLQGACGSCSSSTATLKIAI 178 >gi|315057669|gb|ADT71998.1| Iron-sulfur cluster assembly scaffold protein NifU [Campylobacter jejuni subsp. jejuni S3] Length = 323 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDI----VFKGYRDGI-VFLSMRGACSGCPSASETLKYGV 172 ++ ++ VLD +RP + DGGD+ + K I V++ GACSGC S S Y + Sbjct: 247 LKAVESVLDAEIRPMLHNDGGDLEVIDIQKTEGAAIDVYIRYLGACSGCSSGSGATLYAI 306 Query: 173 ANILNH 178 IL Sbjct: 307 ETILQE 312 >gi|158425034|ref|YP_001526326.1| putative NifU protein [Azorhizobium caulinodans ORS 571] gi|158331923|dbj|BAF89408.1| putative NifU protein [Azorhizobium caulinodans ORS 571] Length = 94 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 27/51 (52%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 +RI + + +RP + RDGGD G V + M GAC C AS TL+ Sbjct: 19 ERIIKAVIEEIRPNLQRDGGDCQLLGLEGNKVLVKMTGACVFCKLASMTLE 69 >gi|117620229|ref|YP_854827.1| putative DNA uptake protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|150383443|sp|A0KF09|NFUA_AERHH RecName: Full=Fe/S biogenesis protein nfuA gi|117561636|gb|ABK38584.1| protein GntY [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 192 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ ++ RI+ VL + V P +A GG + + D + L G C+GC TLK Sbjct: 101 VADDAPLIDRIEYVLMSEVNPMLAGHGGKVTLVELTEDKLAILQFGGGCNGCSMVDYTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ ++ Sbjct: 161 EGIEKQLLEKFPGELNGVK 179 >gi|218708212|ref|YP_002415833.1| putative DNA uptake protein [Vibrio splendidus LGP32] gi|218321231|emb|CAV17181.1| hypothetical protein VS_0148 [Vibrio splendidus LGP32] Length = 245 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 42/195 (21%), Positives = 80/195 (41%), Gaps = 27/195 (13%) Query: 12 ATLKFIPGQVVLVEGA-IHFSNAKEAEISPLASRIFSI-PGIASV-----YFGYDFITVG 64 +T F+ + + E A HF+N + R+F + PG + Y D I Sbjct: 46 STQVFVVSNITITETAQTHFANLLSQQPEGTNIRVFVVNPGTQNAECGVSYCPTDAIEAS 105 Query: 65 KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIES----------D 114 + +E V + + P + + D D MGS +++ D Sbjct: 106 DTKLSFEAFSAYVDELSL-------PFLDEAEI-DFVTDKMGSQLTLKAPNAKMRKVSDD 157 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGV- 172 + +++R++ + +V P +A GG + + + +G ++ G C+GC TLK G+ Sbjct: 158 ATLIERVEYAIQTQVNPQLAGHGGHVSLVEITEEGAAIVAFGGGCNGCSMVDVTLKEGIE 217 Query: 173 ANILNHFVPEVKDIR 187 +L F E+ +R Sbjct: 218 KELLQQFEGELTAVR 232 >gi|167855552|ref|ZP_02478314.1| predicted gluconate transport-associated protein [Haemophilus parasuis 29755] gi|167853353|gb|EDS24605.1| predicted gluconate transport-associated protein [Haemophilus parasuis 29755] Length = 193 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 5/81 (6%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ ++R+ V+ ++ P +A GG + + D L G C+GC TLK Sbjct: 102 VADDAPFIERLDYVIQTQINPQLASHGGRVTLIEVTEDKYAVLQFGGGCNGCSMVDVTLK 161 Query: 170 YGVANILNHFVPE----VKDI 186 G+ L PE VKD+ Sbjct: 162 EGIEKQLLALFPEELVGVKDV 182 >gi|308047919|ref|YP_003911485.1| IscR-regulated protein YhgI [Ferrimonas balearica DSM 9799] gi|307630109|gb|ADN74411.1| IscR-regulated protein YhgI [Ferrimonas balearica DSM 9799] Length = 192 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ + R++ V+ ++V P +A GG I D GI + G C+GC TLK Sbjct: 101 VADDAPLRDRVEYVIQSQVNPQLAGHGGFITLMELTDDGIAVIQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L F E+ ++ V Sbjct: 161 DGIEKQLLEEFSGELTAVKDV 181 >gi|228991182|ref|ZP_04151141.1| hypothetical protein bpmyx0001_19410 [Bacillus pseudomycoides DSM 12442] gi|228768595|gb|EEM17199.1| hypothetical protein bpmyx0001_19410 [Bacillus pseudomycoides DSM 12442] Length = 375 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENAEQAPEQVQHILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|52426287|ref|YP_089424.1| putative DNA uptake protein [Mannheimia succiniciproducens MBEL55E] gi|81386480|sp|Q65QC1|NFUA_MANSM RecName: Full=Fe/S biogenesis protein nfuA gi|52308339|gb|AAU38839.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 194 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R+ V+ ++ P +A GG I D G L G C+GC TLK Sbjct: 103 VADDAPLIERVDYVIQTQINPQLASHGGRITLVEITDEGYAILQFGGGCNGCSMVDVTLK 162 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 GV ++ F E+K + + Sbjct: 163 DGVEKQLVELFAGELKGAKDI 183 >gi|77361763|ref|YP_341338.1| putative DNA uptake protein [Pseudoalteromonas haloplanktis TAC125] gi|119370612|sp|Q3IJQ5|NFUA_PSEHT RecName: Full=Fe/S biogenesis protein nfuA gi|76876674|emb|CAI87896.1| conserved protein of unknown function [Pseudoalteromonas haloplanktis TAC125] Length = 191 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 I D+++ +R++ +L+ V P +A GG + + + GI L G C+GC TLK Sbjct: 101 ISGDASLNERVQHMLETEVNPQLANHGGQVSLVEITAAGIAVLQFGGGCNGCSMIDVTLK 160 Query: 170 YGV 172 G+ Sbjct: 161 EGI 163 >gi|289812184|ref|ZP_06542813.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 173 Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ L +++ P +A GG + D G L G C+GC TLK Sbjct: 101 VADDAPLMERVEYALQSQINPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPE 182 G+ +LN F PE Sbjct: 161 EGIEKQLLNEF-PE 173 >gi|295704071|ref|YP_003597146.1| PBS lyase HEAT-like repeat family protein [Bacillus megaterium DSM 319] gi|294801730|gb|ADF38796.1| PBS lyase HEAT-like repeat family protein [Bacillus megaterium DSM 319] Length = 374 Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISP-LASRIFSIPGIASVYFGYDFITVG 64 E TP+P T+K I VL G + K AE +P + I + G+ VY DF+ V Sbjct: 7 EPTPSPNTMK-INLDEVLSGGKSNNYTEKNAEAAPEVVQDILKVEGVKGVYHVADFLAVE 65 Query: 65 KD-QYDWEHLRPPV 77 ++ +YDW+ + P V Sbjct: 66 RNAKYDWKQILPQV 79 >gi|228997277|ref|ZP_04156900.1| hypothetical protein bmyco0003_18590 [Bacillus mycoides Rock3-17] gi|229004901|ref|ZP_04162629.1| hypothetical protein bmyco0002_18460 [Bacillus mycoides Rock1-4] gi|228756345|gb|EEM05662.1| hypothetical protein bmyco0002_18460 [Bacillus mycoides Rock1-4] gi|228762472|gb|EEM11396.1| hypothetical protein bmyco0003_18590 [Bacillus mycoides Rock3-17] Length = 375 Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENAEQAPEQVQHILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|62185476|ref|YP_220261.1| putative NifU-related protein [Chlamydophila abortus S26/3] gi|62148543|emb|CAH64314.1| putative NifU-related protein [Chlamydophila abortus S26/3] Length = 273 Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 34/63 (53%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + ++ + ++++ P VA DGG ++ + IV ++ G CSGC SA + + +L Sbjct: 186 LHALRTITEDKISPYVALDGGSVLIEKLEGNIVTIAYAGNCSGCFSAIGSTLNSIGQLLR 245 Query: 178 HFV 180 +V Sbjct: 246 AYV 248 >gi|145300948|ref|YP_001143789.1| DNA uptake protein [Aeromonas salmonicida subsp. salmonicida A449] gi|150383444|sp|A4ST19|NFUA_AERS4 RecName: Full=Fe/S biogenesis protein nfuA gi|142853720|gb|ABO92041.1| conserved hypothetical protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 192 Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ ++ RI+ VL + V P +A GG + + D + L G C+GC TLK Sbjct: 101 VADDAPLIDRIEYVLMSEVNPMLAGHGGKVTLVELTEDKLAILQFGGGCNGCSMVDYTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ ++ Sbjct: 161 EGIEKQLLEKFPGELNGVK 179 >gi|146299086|ref|YP_001193677.1| NifU domain-containing protein [Flavobacterium johnsoniae UW101] gi|146153504|gb|ABQ04358.1| nitrogen-fixing NifU domain protein [Flavobacterium johnsoniae UW101] Length = 79 Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 127 NRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASETLKYGVANILNHFVPEVKD 185 + +RP + DGGDI D V + + GAC C TLK GV + + P+++ Sbjct: 15 DEIRPFLKSDGGDITLISIDDDKHVKVRLEGACISCSVNQMTLKAGVETTIKKYAPQIET 74 Query: 186 I 186 + Sbjct: 75 V 75 >gi|223934715|ref|ZP_03626635.1| nitrogen-fixing NifU domain protein [bacterium Ellin514] gi|223896670|gb|EEF63111.1| nitrogen-fixing NifU domain protein [bacterium Ellin514] Length = 305 Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 R+ E LD +VRP + GG++ + L ++G C CPS++ TL+ V + + Sbjct: 117 RLLEALD-KVRPYMESHGGNVELISLVNDKACLRLQGTCKSCPSSAITLELAVRHAIEEA 175 Query: 180 VPEV 183 P++ Sbjct: 176 CPDL 179 >gi|332668404|ref|YP_004451192.1| nitrogen-fixing NifU domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332337218|gb|AEE54319.1| nitrogen-fixing NifU domain-containing protein [Haliscomenobacter hydrossis DSM 1100] Length = 84 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 +E+ S ++ RI L N VRP +A DGG++ V + +V + G C C + T++ Sbjct: 1 METKSELISRIDLAL-NEVRPHLAVDGGNVEVVDVTDEKVVKIKWLGNCQNCNMSIMTMR 59 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ + VPE+ + V Sbjct: 60 AGIEQAIRVKVPEITGVEAV 79 >gi|77459326|ref|YP_348833.1| HesB/YadR/YfhF [Pseudomonas fluorescens Pf0-1] gi|123604407|sp|Q3KBL2|NFUA_PSEPF RecName: Full=Fe/S biogenesis protein nfuA gi|77383329|gb|ABA74842.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 194 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETL 168 + +DS + +RI L + P +A GG + + DGI L G C GC A TL Sbjct: 103 MVNADSPINERINYYLQTEINPGLASHGGQVSLIDVVEDGIAVLQFGGGCQGCGQADVTL 162 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ L +PE+K +R V Sbjct: 163 KEGIERTLLERIPELKGVRDV 183 >gi|218903310|ref|YP_002451144.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus AH820] gi|218535371|gb|ACK87769.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus AH820] Length = 375 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPL-ASRIFSIPGIASVYFGYDFITVG 64 E TP+P T+K I + VL GA + + E +P+ I I GI VY DF+ V Sbjct: 7 EPTPSPNTMKVILNE-VLPSGARNNYTKENTEQAPVQVQEILKIEGIKGVYHVADFLAVE 65 Query: 65 KD-QYDWEHL 73 ++ +YDW+ L Sbjct: 66 RNAKYDWKVL 75 >gi|307720595|ref|YP_003891735.1| nitrogen-fixing NifU domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306978688|gb|ADN08723.1| nitrogen-fixing NifU domain protein [Sulfurimonas autotrophica DSM 16294] Length = 122 Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 D + + +K L +V V GGDI G ++G V++ + GAC GC + T K V Sbjct: 5 DEDIYEAVKNYLP-KVSEYVNSHGGDIKLLGAKEGTVYIELTGACGGCSMSLMTTKIVVQ 63 Query: 174 NILNHFV-PEV 183 L + PE+ Sbjct: 64 KKLRELIHPEL 74 >gi|207109796|ref|ZP_03243958.1| nifU-like protein [Helicobacter pylori HPKX_438_CA4C1] Length = 97 Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 7/75 (9%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIV---FKGYRDGI-VFLSMRGACS 159 +G+ + +VQ+IK +V+D +RP + DGGD+ K D I V++ GAC Sbjct: 22 NGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 81 Query: 160 GCPSASETLKYGVAN 174 GC SA+ + + N Sbjct: 82 GCMSATTGTLFAIEN 96 >gi|256372264|ref|YP_003110088.1| nitrogen-fixing NifU domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008848|gb|ACU54415.1| nitrogen-fixing NifU domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 109 Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Query: 125 LDNRVRPAVARDGGDI--VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 L ++RPAV DGGD+ V G+V + + GACS C ++ T++ GV I+ Sbjct: 16 LIEQLRPAVQYDGGDLELVDVNTETGVVRVRLTGACSSCAISTSTIQLGVERIVK 70 >gi|261493940|ref|ZP_05990448.1| HesB family protein [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494775|ref|ZP_05991254.1| HesB family protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309592|gb|EEY10816.1| HesB family protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310372|gb|EEY11567.1| HesB family protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 198 Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 5/81 (6%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ ++R+ V+ +V P +A GG + + D L G C+GC TLK Sbjct: 107 VADDAPFIERLDYVIQTQVNPQLASHGGKVTLIEITEDKYAVLQFGGGCNGCSMVDVTLK 166 Query: 170 YGVANILNHFVPE----VKDI 186 G+ L P+ VKDI Sbjct: 167 EGIEKQLLAMFPDELVGVKDI 187 >gi|254363181|ref|ZP_04979230.1| HesB family protein [Mannheimia haemolytica PHL213] gi|153095075|gb|EDN75626.1| HesB family protein [Mannheimia haemolytica PHL213] Length = 198 Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 5/81 (6%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ ++R+ V+ +V P +A GG + + D L G C+GC TLK Sbjct: 107 VADDAPFIERLDYVIQTQVNPQLASHGGKVTLIEITEDKYAVLQFGGGCNGCSMVDVTLK 166 Query: 170 YGVANILNHFVPE----VKDI 186 G+ L P+ VKDI Sbjct: 167 EGIEKQLLAMFPDELVGVKDI 187 >gi|159466680|ref|XP_001691526.1| iron-sulfur cluster assembly protein [Chlamydomonas reinhardtii] gi|158278872|gb|EDP04634.1| iron-sulfur cluster assembly protein [Chlamydomonas reinhardtii] Length = 489 Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%) Query: 151 FLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDI 186 +L ++GACS CPS S T+K G+ I N F +V+DI Sbjct: 374 YLRLQGACSSCPSQSATMKGGIERAIRNAFGDQVRDI 410 >gi|65319472|ref|ZP_00392431.1| COG1413: FOG: HEAT repeat [Bacillus anthracis str. A2012] Length = 375 Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 8 TPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKD- 66 TP+P T+K I +V+ +++N + + I I GI VY DF+ V ++ Sbjct: 9 TPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVERNA 68 Query: 67 QYDWEHL 73 +YDW+ L Sbjct: 69 KYDWKVL 75 >gi|157692691|ref|YP_001487153.1| hypothetical protein BPUM_1923 [Bacillus pumilus SAFR-032] gi|157681449|gb|ABV62593.1| hypothetical protein BPUM_1923 [Bacillus pumilus SAFR-032] Length = 378 Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 5/81 (6%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I + + + ++ ++ E + RI +I G+ VY DF+ V + Sbjct: 7 EPTPSPNTMKVILTEALAGGKSNNYKKDQKEEAPEMIKRILNIEGVKGVYHVADFLAVER 66 Query: 66 D-QYDWEHLRPPVLGMIMEHF 85 + ++DW+ +L + E F Sbjct: 67 NAKFDWQG----ILQQVREAF 83 >gi|124023793|ref|YP_001018100.1| hypothetical protein P9303_21001 [Prochlorococcus marinus str. MIT 9303] gi|123964079|gb|ABM78835.1| Hypothetical protein P9303_21001 [Prochlorococcus marinus str. MIT 9303] Length = 42 Score = 39.7 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 25/38 (65%) Query: 149 IVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +V + ++GAC CPS++ TLK G+ L +PEV ++ Sbjct: 1 MVKVCLQGACCSCPSSTMTLKMGIERKLREIIPEVSEV 38 >gi|297620543|ref|YP_003708680.1| putative nitrogen fixation related protein nifU [Waddlia chondrophila WSU 86-1044] gi|297375844|gb|ADI37674.1| putative nitrogen fixation related protein nifU [Waddlia chondrophila WSU 86-1044] Length = 258 Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSA-SETLKYGVANILNHF 179 I++VL++ +RP +A DGG + K ++ + ++ +G C+ C SA TL Y + Sbjct: 187 IEQVLNDEIRPYIALDGGGVEVKELKENELVIAYQGNCTSCFSAVGATLSYIQQTVQARV 246 Query: 180 VPEVK 184 P+++ Sbjct: 247 HPDLR 251 >gi|152977980|ref|YP_001343609.1| putative DNA uptake protein [Actinobacillus succinogenes 130Z] gi|171472933|sp|A6VL27|NFUA_ACTSZ RecName: Full=Fe/S biogenesis protein nfuA gi|150839703|gb|ABR73674.1| HesB/YadR/YfhF-family protein [Actinobacillus succinogenes 130Z] Length = 194 Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ +++R+ V+ ++ P +A GG I + DG L G C+GC TLK Sbjct: 103 VADDAPLIERVDYVIQTQINPQLASHGGRITLIEITDDGYAVLQFGGGCNGCSMVDVTLK 162 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 GV ++ F E+K + + Sbjct: 163 DGVEKQLVEMFNGELKGAKDI 183 >gi|332533247|ref|ZP_08409114.1| hypothetical protein PH505_an00610 [Pseudoalteromonas haloplanktis ANT/505] gi|332037326|gb|EGI73781.1| hypothetical protein PH505_an00610 [Pseudoalteromonas haloplanktis ANT/505] Length = 191 Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 D+++ +R++ +L+ V P +A GG + + + GI L G C+GC TLK G+ Sbjct: 104 DASLNERVQHMLETEVNPQLANHGGQVSLVEITAAGIAILQFGGGCNGCSMIDVTLKEGI 163 >gi|111226134|ref|YP_716928.1| hypothetical protein FRAAL6802 [Frankia alni ACN14a] gi|111153666|emb|CAJ65425.1| Hypothetical protein in nifB-nifU intergenic region (ORF2) [Frankia alni ACN14a] Length = 192 Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 8/84 (9%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGD-----IVFKGYRDGI--VFLSMRGACSGCPSAS 165 +D+ + ++++E+++ +RP + DGGD ++ G + G V L + GAC GC SA+ Sbjct: 109 ADAKLREQVEEIMEE-IRPMLRGDGGDAEVVAVLAGGGQPGSAEVHLRLTGACGGCSSAN 167 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TL + L +PE+ + V Sbjct: 168 ATLTGVIEARLRQELPEIGRVALV 191 >gi|315639387|ref|ZP_07894549.1| NifU family protein [Campylobacter upsaliensis JV21] gi|315480713|gb|EFU71355.1| NifU family protein [Campylobacter upsaliensis JV21] Length = 323 Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDI----VFKGYRDGI-VFLSMRGACSGCPSASETLKYGV 172 ++ ++ VLD +RP + DGGD+ + K I +++ GACSGC S S Y + Sbjct: 247 LKAVEAVLDAEIRPMLQGDGGDMEVIDIQKAEGGAIDIYIRYLGACSGCSSGSGATLYAI 306 Query: 173 ANILNH 178 +IL Sbjct: 307 ESILQE 312 >gi|224372844|ref|YP_002607216.1| NifU family protein [Nautilia profundicola AmH] gi|223588388|gb|ACM92124.1| NifU family protein [Nautilia profundicola AmH] Length = 321 Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGI--VFLSMRGACSGCPSASETLKYGVA 173 ++ I+E LD +++P +A DGG + R DGI V++ GAC+ C S TL Sbjct: 246 IKAIEEFLDTKIKPMLAMDGGSLELLDIREEDGITKVYIRYMGACATCASGGVTLLAIED 305 Query: 174 NILNHF 179 + HF Sbjct: 306 EMKKHF 311 >gi|167391701|ref|XP_001739894.1| hypothetical protein [Entamoeba dispar SAW760] gi|165896233|gb|EDR23708.1| hypothetical protein EDI_167670 [Entamoeba dispar SAW760] Length = 110 Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 5/64 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETLKYGV 172 + ++ +V + + P V +DGG++ +DG IV++ G C GC +A+ K + Sbjct: 5 ISKLNQVFEQYIDPIVKKDGGNVEVYEVKDGVNGEIIVYIQYSGKCVGCAAANGATKEKI 64 Query: 173 ANIL 176 IL Sbjct: 65 QTIL 68 >gi|255323222|ref|ZP_05364357.1| NifU family protein [Campylobacter showae RM3277] gi|255299745|gb|EET79027.1| NifU family protein [Campylobacter showae RM3277] Length = 330 Score = 39.3 bits (90), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGI----VFLSMRGACSGCPSASETLKYGV 172 ++ I+ V+D VRP + DGG++ + +D V++ GACSGC S + Y + Sbjct: 254 LKAIESVIDRDVRPMLMMDGGNMEILDLQKDAEGKFDVYIRYMGACSGCASGATGTLYAI 313 Query: 173 ANILNH 178 N+L Sbjct: 314 ENVLQE 319 >gi|315128008|ref|YP_004070011.1| DNA uptake protein [Pseudoalteromonas sp. SM9913] gi|315016522|gb|ADT69860.1| putative DNA uptake protein [Pseudoalteromonas sp. SM9913] Length = 191 Score = 39.3 bits (90), Expect = 0.24, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 D+++ +R++ +L+ V P +A GG + + + GI L G C+GC TLK G+ Sbjct: 104 DASLNERVQHMLETEVNPQLANHGGQVSLVEITAAGIAVLQFGGGCNGCSMIDVTLKEGI 163 >gi|196039744|ref|ZP_03107048.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus NVH0597-99] gi|196029447|gb|EDX68050.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus NVH0597-99] Length = 375 Score = 39.3 bits (90), Expect = 0.25, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPL-ASRIFSIPGIASVYFGYDFITVG 64 E TP+P T+K I + VL GA + + E +P+ I I GI VY DF+ V Sbjct: 7 EPTPSPNTMKVILNE-VLPSGARNNYTNENIEQAPMQVQEILKIEGIKGVYHVADFLAVE 65 Query: 65 KD-QYDWEHL 73 ++ +YDW+ L Sbjct: 66 RNAKYDWKVL 75 >gi|85710810|ref|ZP_01041871.1| hypothetical protein OS145_02245 [Idiomarina baltica OS145] gi|85695214|gb|EAQ33151.1| hypothetical protein OS145_02245 [Idiomarina baltica OS145] Length = 192 Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ ++ R++ V+ + P +A GG + V + DG L G C+GC T+K Sbjct: 101 VADDAPLIDRVEYVIQAEINPQLANHGGHVLVTEITEDGKAVLQFGGGCNGCSMIDVTVK 160 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ ++ F E+ +R V Sbjct: 161 NGIEKELIERFPDEITGVRDV 181 >gi|90408321|ref|ZP_01216485.1| hypothetical protein PCNPT3_13183 [Psychromonas sp. CNPT3] gi|90310552|gb|EAS38673.1| hypothetical protein PCNPT3_13183 [Psychromonas sp. CNPT3] Length = 193 Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 ++ D+ + +R++ V+ ++ P +A GG I + + D + + G C+GC TLK Sbjct: 101 VKDDAPLQERVEYVIQVQINPQLASHGGFIKLIELTEDKVAVIEFGGGCNGCSQVDLTLK 160 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L F E+ +R + Sbjct: 161 DGIEKELLEEFSGELNAVRDI 181 >gi|142396|gb|AAA22167.1| nifU protein [Azotobacter vinelandii] Length = 312 Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 ++RI+ VL +RP + RD GD+ V++ + GAC+GC AS TL Sbjct: 233 IRRIETVL-AAIRPTLQRDKGDVELIDVDGKNVYVKLTGACTGCQMASMTL 282 >gi|307249357|ref|ZP_07531351.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307260607|ref|ZP_07542299.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306858651|gb|EFM90713.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306869684|gb|EFN01469.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 215 Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 5/81 (6%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ ++R+ V+ +V P +A GG + + D L G C+GC TLK Sbjct: 124 VADDAPFIERLDYVIQTQVNPQLASHGGRVTLIEVTEDKYAILQFGGGCNGCSMVDVTLK 183 Query: 170 YGVANILNHFVPE----VKDI 186 G+ L P+ VKD+ Sbjct: 184 EGIEKQLLAMFPDELAGVKDV 204 >gi|226942327|ref|YP_002797400.1| nitrogen fixation Fe-S cluster scaffold protein [Azotobacter vinelandii DJ] gi|128318|sp|P05340|NIFU_AZOVI RecName: Full=Nitrogen fixation protein nifU gi|142360|gb|AAA64725.1| nifU protein [Azotobacter vinelandii] gi|226717254|gb|ACO76425.1| Nitrogen fixation Fe-S cluster scaffold protein [Azotobacter vinelandii DJ] Length = 312 Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 ++RI+ VL +RP + RD GD+ V++ + GAC+GC AS TL Sbjct: 233 IRRIETVL-AAIRPTLQRDKGDVELIDVDGKNVYVKLTGACTGCQMASMTL 282 >gi|268317455|ref|YP_003291174.1| Scaffold protein Nfu/NifU [Rhodothermus marinus DSM 4252] gi|262334989|gb|ACY48786.1| Scaffold protein Nfu/NifU [Rhodothermus marinus DSM 4252] Length = 102 Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 2/85 (2%) Query: 3 IQTEDTPNPATLKFI-PGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 +Q+ TPNP +LKF PGQ + +G + F +A+ A PLA+ +F+I G+ V +F+ Sbjct: 12 LQSHPTPNPNSLKFTAPGQTFIDKGLLSFRSAEAAAAHPLAAALFAIEGVCDVLILPEFV 71 Query: 62 TVGK-DQYDWEHLRPPVLGMIMEHF 85 TV K WE + PV+ + + Sbjct: 72 TVTKRPDVPWEAIEAPVMEALRAYL 96 >gi|169633930|ref|YP_001707666.1| putative membrane-bound protein in GNT I transport system (GntY) [Acinetobacter baumannii SDF] gi|254767285|sp|B0VSR5|NFUA_ACIBS RecName: Full=Fe/S biogenesis protein nfuA gi|169152722|emb|CAP01733.1| putative membrane-bound protein in GNT I transport system (GntY) [Acinetobacter baumannii] Length = 212 Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 5/78 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D+++ +RI VL + P +A GG+ +D L G C GC + TL Sbjct: 120 DASIEERITYVLQAEINPGLAGHGGNCSLVEVQDDPEHGLTAVLKFGGGCQGCSAIDVTL 179 Query: 169 KYGVANILNHFVPEVKDI 186 K GV L + E++ + Sbjct: 180 KQGVETTLKEHILELQRV 197 >gi|320162486|ref|YP_004175711.1| hypothetical protein ANT_30850 [Anaerolinea thermophila UNI-1] gi|319996340|dbj|BAJ65111.1| hypothetical protein ANT_30850 [Anaerolinea thermophila UNI-1] Length = 89 Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 F S ++ + E LD ++ GG + G+ ++ + + GAC GCP + T+ Sbjct: 8 SFEYSTEERLRALIETLDTYIQ---QYHGGSVEMVGFDGKVLKVRLGGACEGCPLSPTTI 64 Query: 169 KYGVANILNHFVPEVKDIRTV 189 VA + F PE++ + V Sbjct: 65 NGWVAGTVRQFFPEIEKVEAV 85 >gi|237841427|ref|XP_002370011.1| hypothetical protein TGME49_021920 [Toxoplasma gondii ME49] gi|211967675|gb|EEB02871.1| hypothetical protein TGME49_021920 [Toxoplasma gondii ME49] Length = 517 Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%) Query: 121 IKEVLDNRVRPAVARDGGDI--VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +++VL++ VRP + GG++ V V L+ +GACS CPSA +TL G+ L Sbjct: 297 VEQVLES-VRPYLRGHGGNVKLVELDSEKKTVRLAFKGACSTCPSAHQTLYEGLQGALRE 355 Query: 179 FVPEV 183 P++ Sbjct: 356 VWPDL 360 >gi|224001364|ref|XP_002290354.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220973776|gb|EED92106.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 69 Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%) Query: 129 VRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETLKYGVANILNH 178 VRP + DGG++ + G V+L + GAC C S++ T+K G+ +L Sbjct: 1 VRPYLISDGGNVSVQNVDAGTGNVYLLLEGACGSCASSTVTMKMGIERVLKE 52 >gi|194016950|ref|ZP_03055563.1| YpgR [Bacillus pumilus ATCC 7061] gi|194011556|gb|EDW21125.1| YpgR [Bacillus pumilus ATCC 7061] Length = 378 Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 5/81 (6%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I + + + ++ ++ E + RI +I G+ VY DF+ V + Sbjct: 7 EPTPSPNTMKVILTEALAGGKSNNYKKDQKDEAPEMIKRILNIEGVKGVYHVADFLAVER 66 Query: 66 D-QYDWEHLRPPVLGMIMEHF 85 + ++DW+ +L + E F Sbjct: 67 NAKFDWQG----ILQQVREAF 83 >gi|118470355|ref|YP_886620.1| hypothetical protein MSMEG_2268 [Mycobacterium smegmatis str. MC2 155] gi|118171642|gb|ABK72538.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length = 295 Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 29/59 (49%) Query: 128 RVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +VRP + GGD+ G F+ + GAC+GC ++ TL+ V L V V + Sbjct: 100 QVRPQLRSHGGDVTLVRIESGTAFVRLEGACNGCSMSAVTLRQLVETALLEGVQGVSKV 158 >gi|322515071|ref|ZP_08068079.1| Fe/S-biogenesis protein NfuA [Actinobacillus ureae ATCC 25976] gi|322118951|gb|EFX91128.1| Fe/S-biogenesis protein NfuA [Actinobacillus ureae ATCC 25976] Length = 213 Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 5/81 (6%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ ++R+ V+ +V P +A GG + + D L G C+GC TLK Sbjct: 122 VADDAPFIERLDYVIQTQVNPQLASHGGRVTLIEVTEDKYAILQFGGGCNGCSMVDVTLK 181 Query: 170 YGVANILNHFVPE----VKDI 186 G+ L P+ VKD+ Sbjct: 182 EGIEKQLLAMFPDELVGVKDV 202 >gi|229172900|ref|ZP_04300454.1| hypothetical protein bcere0006_20080 [Bacillus cereus MM3] gi|228610645|gb|EEK67913.1| hypothetical protein bcere0006_20080 [Bacillus cereus MM3] Length = 375 Score = 38.9 bits (89), Expect = 0.30, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + ++DW+ L Sbjct: 67 NAKFDWKVL 75 >gi|332308531|ref|YP_004436382.1| IscR-regulated protein YhgI [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175860|gb|AEE25114.1| IscR-regulated protein YhgI [Glaciecola agarilytica 4H-3-7+YE-5] Length = 192 Score = 38.9 bits (89), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 ++ D+ + +RI ++++ + P +A GG ++ D G L G C+GC TLK Sbjct: 101 VDDDAPLEERINYMIESEINPQLASHGGKVMLMEITDKGEAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ ++ Sbjct: 161 DGIEKQMLAQFSGELTAVK 179 >gi|223041980|ref|ZP_03612164.1| putative DNA uptake protein [Actinobacillus minor 202] gi|223017237|gb|EEF15665.1| putative DNA uptake protein [Actinobacillus minor 202] Length = 199 Score = 38.9 bits (89), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ ++R+ V+ ++ P +A GG + + D L G C+GC TLK Sbjct: 108 VADDAPFIERLDYVIQTQINPQLASHGGKVTLIEVTEDKFAILQFGGGCNGCSMVDVTLK 167 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L F E+ ++ V Sbjct: 168 EGIEKQLLLQFPDELAGVKDV 188 >gi|253583865|ref|ZP_04861063.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251834437|gb|EES63000.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 92 Score = 38.9 bits (89), Expect = 0.31, Method: Compositional matrix adjust. Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANI 175 +++I++ LD +RP + + GDI + Y + + L + G C CP + +T + + Sbjct: 1 MEKIEKFLDEEIRPELQKHNGDISIEEYDEKSKKLVLRLMGQCCTCPHSIDTTENFIKVS 60 Query: 176 LNHFVPEVKDI 186 + PE++ + Sbjct: 61 IKEKFPEIETL 71 >gi|240948503|ref|ZP_04752876.1| putative DNA uptake protein [Actinobacillus minor NM305] gi|240297011|gb|EER47582.1| putative DNA uptake protein [Actinobacillus minor NM305] Length = 199 Score = 38.9 bits (89), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ ++R+ V+ ++ P +A GG + + D L G C+GC TLK Sbjct: 108 VADDAPFIERLDYVIQTQINPQLASHGGKVTLIEVTEDKFAILQFGGGCNGCSMVDVTLK 167 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L F E+ ++ V Sbjct: 168 EGIEKQLLLQFPDELAGVKDV 188 >gi|229161174|ref|ZP_04289161.1| hypothetical protein bcere0009_19630 [Bacillus cereus R309803] gi|228622270|gb|EEK79109.1| hypothetical protein bcere0009_19630 [Bacillus cereus R309803] Length = 375 Score = 38.9 bits (89), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++N + + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + ++DW+ L Sbjct: 67 NAKFDWKVL 75 >gi|32034535|ref|ZP_00134699.1| COG0316: Uncharacterized conserved protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207637|ref|YP_001052862.1| putative DNA uptake protein [Actinobacillus pleuropneumoniae L20] gi|165975605|ref|YP_001651198.1| putative DNA uptake protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149420|ref|YP_001967945.1| hypothetical protein APP7_0151 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249853|ref|ZP_07336057.1| putative DNA uptake protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303251973|ref|ZP_07338144.1| putative DNA uptake protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247135|ref|ZP_07529187.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307251678|ref|ZP_07533583.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256174|ref|ZP_07537961.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307262738|ref|ZP_07544365.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|150383442|sp|A3MYM1|NFUA_ACTP2 RecName: Full=Fe/S biogenesis protein nfuA gi|254767287|sp|B3GZZ1|NFUA_ACTP7 RecName: Full=Fe/S biogenesis protein nfuA gi|254767288|sp|B0BS54|NFUA_ACTPJ RecName: Full=Fe/S biogenesis protein nfuA gi|126096429|gb|ABN73257.1| hypothetical protein APL_0149 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875706|gb|ABY68754.1| transformation locus protein OrfG-like protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914551|gb|ACE60803.1| hypothetical protein APP7_0151 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649403|gb|EFL79588.1| putative DNA uptake protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651420|gb|EFL81572.1| putative DNA uptake protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306856384|gb|EFM88535.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306860875|gb|EFM92883.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306865355|gb|EFM97251.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306871883|gb|EFN03600.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 199 Score = 38.9 bits (89), Expect = 0.31, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 5/81 (6%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ ++R+ V+ +V P +A GG + + D L G C+GC TLK Sbjct: 108 VADDAPFIERLDYVIQTQVNPQLASHGGRVTLIEVTEDKYAILQFGGGCNGCSMVDVTLK 167 Query: 170 YGVANILNHFVPE----VKDI 186 G+ L P+ VKD+ Sbjct: 168 EGIEKQLLAMFPDELAGVKDV 188 >gi|312960571|ref|ZP_07775077.1| Fe/S biogenesis protein [Pseudomonas fluorescens WH6] gi|311285097|gb|EFQ63672.1| Fe/S biogenesis protein [Pseudomonas fluorescens WH6] Length = 194 Score = 38.9 bits (89), Expect = 0.32, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 1/80 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + +DS V +RI L + P +A GG + + DGI L G C GC A TL+ Sbjct: 104 VNADSPVNERINYYLQTEINPGLASHGGQVSLIDVVEDGIAVLKFGGGCQGCGQADVTLR 163 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ L +PE+K +R V Sbjct: 164 EGIERTLLERIPELKGVRDV 183 >gi|294676126|ref|YP_003576741.1| nitrogen fixation protein NifU [Rhodobacter capsulatus SB 1003] gi|294474946|gb|ADE84334.1| nitrogen fixation protein NifU-1 [Rhodobacter capsulatus SB 1003] Length = 142 Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 7/79 (8%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL--- 168 E ++AVV L +RP RDGGDI G V + + G+C+GC ++ TL Sbjct: 67 EEEAAVVAE----LIAEMRPMFQRDGGDIELIGLTGATVQVRLSGSCAGCMMSARTLSTV 122 Query: 169 KYGVANILNHFVPEVKDIR 187 ++ + L V V +IR Sbjct: 123 QHQLIETLGRPVRVVPEIR 141 >gi|220932338|ref|YP_002509246.1| Thioredoxin-like protein [Halothermothrix orenii H 168] gi|219993648|gb|ACL70251.1| Thioredoxin-like protein [Halothermothrix orenii H 168] Length = 84 Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust. Identities = 14/50 (28%), Positives = 28/50 (56%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 ++I+ ++ +RP + DGGDI ++GY++ V + C+ C + L Sbjct: 5 KKIEHYIEKSIRPRIRVDGGDIKYEGYKNETVIIGAYAGCATCVCCDDRL 54 >gi|119471386|ref|ZP_01613858.1| predicted gluconate transport associated protein [Alteromonadales bacterium TW-7] gi|119445662|gb|EAW26946.1| predicted gluconate transport associated protein [Alteromonadales bacterium TW-7] Length = 191 Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 I D+++ +R++ +L+ V P +A GG + + + G+ L G C+GC TLK Sbjct: 101 IGDDASLNERVQHMLETEVNPQLANHGGQVSLVEITAAGVAVLQFGGGCNGCSMIDVTLK 160 Query: 170 YGV 172 G+ Sbjct: 161 EGI 163 >gi|218667291|ref|YP_002424638.1| NifU domain protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519504|gb|ACK80090.1| NifU domain protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 130 Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 15/84 (17%) Query: 106 GSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSAS 165 G D + +AV + ++ V R + RDGGDI + V + M+GAC+GCP+A Sbjct: 52 GPDDPLPDPAAVAEAVQTV-----RHILHRDGGDIELVEIIERDVRVRMKGACAGCPNAV 106 Query: 166 ETLKY----------GVANILNHF 179 LK GV N+ N F Sbjct: 107 IDLKQVVERIVGAVPGVVNVSNTF 130 >gi|302343333|ref|YP_003807862.1| nitrogen-fixing NifU domain protein [Desulfarculus baarsii DSM 2075] gi|301639946|gb|ADK85268.1| nitrogen-fixing NifU domain protein [Desulfarculus baarsii DSM 2075] Length = 78 Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 130 RPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 R +A+ G++ V ++G+V + + GACSGC SA TL+ + L +P+V + Sbjct: 17 RAELAKHHGNVEVLAVNQEGVVLVRLTGACSGCKSAPLTLRDVIEKSLKARLPQVTRV 74 >gi|198282439|ref|YP_002218760.1| nitrogen-fixing NifU domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198246960|gb|ACH82553.1| nitrogen-fixing NifU domain protein [Acidithiobacillus ferrooxidans ATCC 53993] Length = 127 Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 15/84 (17%) Query: 106 GSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSAS 165 G D + +AV + ++ V R + RDGGDI + V + M+GAC+GCP+A Sbjct: 49 GPDDPLPDPAAVAEAVQTV-----RHILHRDGGDIELVEIIERDVRVRMKGACAGCPNAV 103 Query: 166 ETLKY----------GVANILNHF 179 LK GV N+ N F Sbjct: 104 IDLKQVVERIVGAVPGVVNVSNTF 127 >gi|154173662|ref|YP_001407485.1| NifU family protein [Campylobacter curvus 525.92] gi|112802143|gb|EAT99487.1| NifU family protein [Campylobacter curvus 525.92] Length = 330 Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGG-----DIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ ++ V+D +RP + DGG DI ++ V++ GACSGC S + Y + Sbjct: 254 LKAVESVIDQEIRPMLMMDGGNLEILDIRKDNDQNVDVYIRYLGACSGCASGAGGTLYAI 313 Query: 173 ANILNH 178 N+L Sbjct: 314 ENVLQE 319 >gi|317129652|ref|YP_004095934.1| Scaffold protein Nfu/NifU [Bacillus cellulosilyticus DSM 2522] gi|315474600|gb|ADU31203.1| Scaffold protein Nfu/NifU [Bacillus cellulosilyticus DSM 2522] Length = 87 Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAK-EAEISPLASRIFSIPGIASVYFGYDFI 61 ++ E TPNP +KF +V L EG+ S K ++ LA + I G+ +++ DF+ Sbjct: 5 VRAEPTPNPNAMKFTATEV-LFEGSGSASFKKGDSPDHALAKALLEIDGVDNIFGYQDFV 63 Query: 62 TVGKD-QYDWEHLRPPV 77 TV K+ +W+ L P + Sbjct: 64 TVNKEADVEWDALLPKI 80 >gi|120403404|ref|YP_953233.1| NifU domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119956222|gb|ABM13227.1| nitrogen-fixing NifU domain protein [Mycobacterium vanbaalenii PYR-1] Length = 297 Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 R+ + LD+ VRP + GGD+ G DG+V L +G+CS CPS+S TL+ V + + Sbjct: 94 HRVNDALDS-VRPYLGSHGGDVSLLGVTDGVVRLRFQGSCSSCPSSSVTLELAVQDAILA 152 Query: 179 FVPEVKDIRTV 189 PE+ DI V Sbjct: 153 AAPEIVDIELV 163 >gi|317008870|gb|ADU79450.1| nifU-like protein [Helicobacter pylori India7] Length = 326 Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVF---KGYRDGI-VFLSMRGACS 159 +G+ + +VQ+IK +V+D +R + DGGD+ K D I V++ GAC Sbjct: 237 NGELAFREMTMVQKIKAVDKVIDENIRAMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFV 180 GC SA+ + + N L + Sbjct: 297 GCMSATTGTLFAIENALQELL 317 >gi|257095889|ref|YP_003169530.1| Fe-S cluster assembly protein NifU [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048413|gb|ACV37601.1| Fe-S cluster assembly protein NifU [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 294 Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 ++RI+E L+ +RP++ RD GD+ +++ + GAC GC + TL Sbjct: 219 IRRIEETLEA-IRPSLQRDHGDVTLVEVDGKKIYVELTGACRGCSMEAATL 268 >gi|255020109|ref|ZP_05292180.1| hypothetical protein ACA_0450 [Acidithiobacillus caldus ATCC 51756] gi|254970471|gb|EET27962.1| hypothetical protein ACA_0450 [Acidithiobacillus caldus ATCC 51756] Length = 130 Score = 38.5 bits (88), Expect = 0.39, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 10/61 (16%) Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY----------GVANILNH 178 VR + RDGGDI V + M+GAC+GCP+A L+ GVA + N Sbjct: 70 VRRILQRDGGDIELVEIAQRDVRVRMKGACAGCPNAVLDLQQVVERIVGAVPGVARVSNT 129 Query: 179 F 179 F Sbjct: 130 F 130 >gi|167032993|ref|YP_001668224.1| IscR-regulated protein YhgI [Pseudomonas putida GB-1] gi|254767313|sp|B0KKI2|NFUA_PSEPG RecName: Full=Fe/S biogenesis protein nfuA gi|166859481|gb|ABY97888.1| IscR-regulated protein YhgI [Pseudomonas putida GB-1] Length = 194 Score = 38.5 bits (88), Expect = 0.39, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETL 168 + DS + +RI L + P +A GG + + DGI L G C GC A TL Sbjct: 103 MVNEDSPINERINYYLQTEINPGLASHGGQVSLVDVVDDGIAVLQFGGGCQGCGQADVTL 162 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ L +PE+K +R V Sbjct: 163 KEGIERTLLERIPELKGVRDV 183 >gi|291484607|dbj|BAI85682.1| hypothetical protein BSNT_03263 [Bacillus subtilis subsp. natto BEST195] Length = 377 Score = 38.5 bits (88), Expect = 0.40, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I + + + ++ + P+ I I G+ VY DF+ V + Sbjct: 7 EPTPSPNTMKVILTEELPAGKSNNYKPEQAEGAPPVIEEILKIDGVKGVYHVADFLAVER 66 Query: 66 D-QYDWEHLRPPVLGMI-MEHFISGD 89 + +YDW+ + P V ME SG+ Sbjct: 67 NARYDWKDILPQVRTAFGMESAESGE 92 >gi|26989102|ref|NP_744527.1| yhgI protein [Pseudomonas putida KT2440] gi|148548525|ref|YP_001268627.1| HesB/YadR/YfhF-family protein [Pseudomonas putida F1] gi|325276843|ref|ZP_08142540.1| HesB/YadR/YfhF-family protein [Pseudomonas sp. TJI-51] gi|51702172|sp|Q88KB2|NFUA_PSEPK RecName: Full=Fe/S biogenesis protein nfuA gi|254767312|sp|A5W5N3|NFUA_PSEP1 RecName: Full=Fe/S biogenesis protein nfuA gi|24983933|gb|AAN67991.1|AE016431_7 yhgI protein [Pseudomonas putida KT2440] gi|148512583|gb|ABQ79443.1| HesB/YadR/YfhF-family protein [Pseudomonas putida F1] gi|313499540|gb|ADR60906.1| YhgI [Pseudomonas putida BIRD-1] gi|324098009|gb|EGB96158.1| HesB/YadR/YfhF-family protein [Pseudomonas sp. TJI-51] Length = 194 Score = 38.5 bits (88), Expect = 0.40, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETL 168 + DS + +RI L + P +A GG + + DGI L G C GC A TL Sbjct: 103 MVNEDSPINERINYYLQTEINPGLASHGGQVSLVDVVDDGIAVLQFGGGCQGCGQADVTL 162 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ L +PE+K +R V Sbjct: 163 KEGIERTLLERIPELKGVRDV 183 >gi|254785693|ref|YP_003073122.1| Fe-S cluster assembly protein NifU [Teredinibacter turnerae T7901] gi|237687387|gb|ACR14651.1| Fe-S cluster assembly protein NifU [Teredinibacter turnerae T7901] Length = 317 Score = 38.5 bits (88), Expect = 0.41, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 5/68 (7%) Query: 118 VQRIK--EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASET---LKYGV 172 VQRIK E + +RP + RD GD+ +++ + GACSGC A+ T ++ + Sbjct: 234 VQRIKVIEKALDEIRPTLQRDHGDVELLDVDGKNIYIKLIGACSGCQLATATVGGIQQKL 293 Query: 173 ANILNHFV 180 L FV Sbjct: 294 MEALGEFV 301 >gi|317010501|gb|ADU84248.1| nifU-like protein [Helicobacter pylori SouthAfrica7] Length = 326 Score = 38.5 bits (88), Expect = 0.41, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVF---KGYRDGI-VFLSMRGACS 159 +G+ + +VQ+IK +V+D +R + DGGD+ K D I V++ GAC Sbjct: 237 NGELAFREMTMVQKIKAVDKVIDENIRAMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFV 180 GC SA+ + + N L + Sbjct: 297 GCMSATTGTLFAIENALQELL 317 >gi|86743152|ref|YP_483552.1| HesB/YadR/YfhF [Frankia sp. CcI3] gi|86570014|gb|ABD13823.1| HesB/YadR/YfhF [Frankia sp. CcI3] Length = 206 Score = 38.5 bits (88), Expect = 0.41, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 11/94 (11%) Query: 106 GSGDFIE---SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-------VFLSMR 155 G+ D E +D+ + ++++E+++ +RP + DGGD G V L + Sbjct: 113 GASDSTERTAADARLREQVEEIMEE-IRPFLRGDGGDAEVVATLAGNGEPGTAEVHLRLT 171 Query: 156 GACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 GAC GC SA+ TL + + L +PE+ + V Sbjct: 172 GACGGCSSATATLTGVIESRLKEALPEIGRVALV 205 >gi|15611277|ref|NP_222928.1| nifU-like protein [Helicobacter pylori J99] gi|4154728|gb|AAD05790.1| putative [Helicobacter pylori J99] Length = 326 Score = 38.5 bits (88), Expect = 0.42, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVF---KGYRDGI-VFLSMRGACS 159 +G+ + +VQ+IK +V+D +R + DGGD+ K D I V++ GAC Sbjct: 237 NGELAFREMTMVQKIKAVDKVIDENIRAMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFV 180 GC SA+ + + N L + Sbjct: 297 GCMSATTGTLFAIENALQELL 317 >gi|217032835|ref|ZP_03438315.1| hypothetical protein HPB128_176g13 [Helicobacter pylori B128] gi|298736836|ref|YP_003729366.1| hypothetical protein HPB8_1345 [Helicobacter pylori B8] gi|216945460|gb|EEC24122.1| hypothetical protein HPB128_176g13 [Helicobacter pylori B128] gi|298356030|emb|CBI66902.1| conserved hypothetical protein [Helicobacter pylori B8] Length = 326 Score = 38.5 bits (88), Expect = 0.42, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVF---KGYRDGI-VFLSMRGACS 159 +G+ + +VQ+IK +V+D +R + DGGD+ K D I V++ GAC Sbjct: 237 NGELAFREMTMVQKIKAVDKVIDENIRAMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFV 180 GC SA+ + + N L + Sbjct: 297 GCMSATTGTLFAIENALQELL 317 >gi|208434169|ref|YP_002265835.1| nifU-like protein [Helicobacter pylori G27] gi|308184024|ref|YP_003928157.1| nifU-like protein [Helicobacter pylori SJM180] gi|208432098|gb|ACI26969.1| nifU-like protein [Helicobacter pylori G27] gi|308059944|gb|ADO01840.1| nifU-like protein [Helicobacter pylori SJM180] Length = 326 Score = 38.5 bits (88), Expect = 0.42, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVF---KGYRDGI-VFLSMRGACS 159 +G+ + +VQ+IK +V+D +R + DGGD+ K D I V++ GAC Sbjct: 237 NGELAFREMTMVQKIKAVDKVIDENIRAMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFV 180 GC SA+ + + N L + Sbjct: 297 GCMSATTGTLFAIENALQELL 317 >gi|317013664|gb|ADU81100.1| nifU-like protein [Helicobacter pylori Gambia94/24] Length = 326 Score = 38.5 bits (88), Expect = 0.42, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVF---KGYRDGI-VFLSMRGACS 159 +G+ + +VQ+IK +V+D +R + DGGD+ K D I V++ GAC Sbjct: 237 NGELAFREMTMVQKIKAVDKVIDENIRAMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFV 180 GC SA+ + + N L + Sbjct: 297 GCMSATTGTLFAIENALQELL 317 >gi|308182394|ref|YP_003926521.1| nifU-like protein [Helicobacter pylori PeCan4] gi|308064579|gb|ADO06471.1| nifU-like protein [Helicobacter pylori PeCan4] Length = 326 Score = 38.5 bits (88), Expect = 0.42, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVF---KGYRDGI-VFLSMRGACS 159 +G+ + +VQ+IK +V+D +R + DGGD+ K D I V++ GAC Sbjct: 237 NGELAFREMTMVQKIKAVDKVIDENIRAMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFV 180 GC SA+ + + N L + Sbjct: 297 GCMSATTGTLFAIENALQELL 317 >gi|307636912|gb|ADN79362.1| iron-sulfur cluster assembly scaffold protein [Helicobacter pylori 908] gi|325995502|gb|ADZ50907.1| IscU/NifU-like protein [Helicobacter pylori 2018] gi|325997100|gb|ADZ49308.1| nifU like protein [Helicobacter pylori 2017] Length = 326 Score = 38.5 bits (88), Expect = 0.43, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVF---KGYRDGI-VFLSMRGACS 159 +G+ + +VQ+IK +V+D +R + DGGD+ K D I V++ GAC Sbjct: 237 NGELAFREMTMVQKIKAVDKVIDENIRTMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFV 180 GC SA+ + + N L + Sbjct: 297 GCMSATTGTLFAIENALQELL 317 >gi|329894923|ref|ZP_08270722.1| hypothetical protein IMCC3088_1134 [gamma proteobacterium IMCC3088] gi|328922652|gb|EGG29987.1| hypothetical protein IMCC3088_1134 [gamma proteobacterium IMCC3088] Length = 191 Score = 38.5 bits (88), Expect = 0.44, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + DS + RI +L N V PA+A GG++ + + D I L G C GC +TLK Sbjct: 101 VSDDSPIEDRINYILYNEVNPALAAHGGEVSLVEITEDQIAILQFGGGCQGCGMVDQTLK 160 Query: 170 YGVANILNHFVPEVKDIRTV 189 GV L VPE++ +R V Sbjct: 161 GGVEKSLLEQVPELRGVRDV 180 >gi|108562648|ref|YP_626964.1| nifU-like protein [Helicobacter pylori HPAG1] gi|107836421|gb|ABF84290.1| nifU-like protein [Helicobacter pylori HPAG1] Length = 326 Score = 38.5 bits (88), Expect = 0.44, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%) Query: 107 SGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVF---KGYRDGI-VFLSMRGACS 159 +G+ + +VQ+IK +V+D +R + DGGD+ K D I V++ GAC Sbjct: 237 NGELAFREMTMVQKIKAVDKVIDENIRAMLMMDGGDLEILDIKESDDYIDVYIRYMGACD 296 Query: 160 GCPSASETLKYGVANILNHFV 180 GC SA+ + + N L + Sbjct: 297 GCMSATTGTLFAIENALQELL 317 >gi|296113867|ref|YP_003627805.1| nifU-like protein [Moraxella catarrhalis RH4] gi|295921561|gb|ADG61912.1| nifU-like protein [Moraxella catarrhalis RH4] gi|326560549|gb|EGE10930.1| nifU-like protein [Moraxella catarrhalis 103P14B1] gi|326561419|gb|EGE11769.1| nifU-like protein [Moraxella catarrhalis 46P47B1] gi|326562191|gb|EGE12519.1| nifU-like protein [Moraxella catarrhalis 7169] gi|326565627|gb|EGE15790.1| nifU-like protein [Moraxella catarrhalis 12P80B1] gi|326567147|gb|EGE17269.1| nifU-like protein [Moraxella catarrhalis BC1] gi|326568427|gb|EGE18507.1| nifU-like protein [Moraxella catarrhalis BC7] gi|326572317|gb|EGE22312.1| nifU-like protein [Moraxella catarrhalis BC8] gi|326573929|gb|EGE23879.1| nifU-like protein [Moraxella catarrhalis O35E] gi|326574921|gb|EGE24851.1| nifU-like protein [Moraxella catarrhalis 101P30B1] gi|326576248|gb|EGE26163.1| nifU-like protein [Moraxella catarrhalis CO72] Length = 203 Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust. Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDI----VFKGYRDGIVFLSMRGACSGCPSASETLK 169 ++++ +RI VL + + P +A GG + V + L G C GC + TL+ Sbjct: 112 NASIEERINYVLQSEINPNLASHGGSVDLLEVIEDEAGLTAVLKFGGGCQGCSAVDVTLR 171 Query: 170 YGVANILNHFVPEVKDI 186 GV L +PE+ + Sbjct: 172 QGVEVQLKQQIPELTQV 188 >gi|289550836|ref|YP_003471740.1| hypothetical protein SLGD_01522 [Staphylococcus lugdunensis HKU09-01] gi|315658333|ref|ZP_07911205.1| scaffold protein Nfu/NifU N [Staphylococcus lugdunensis M23590] gi|289180368|gb|ADC87613.1| hypothetical protein SLGD_01522 [Staphylococcus lugdunensis HKU09-01] gi|315496662|gb|EFU84985.1| scaffold protein Nfu/NifU N [Staphylococcus lugdunensis M23590] Length = 84 Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Query: 7 DTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKD 66 +TPN T+K + + +++A + + +R+F I G+ S+++ DFI+V K+ Sbjct: 8 ETPNQNTIKITLSEKRSDNKSDTYTHAADGQ-PEFINRLFDIEGVTSIFYVMDFISVDKE 66 Query: 67 Q-YDWEHLRPPV 77 DW+ L P + Sbjct: 67 NDKDWDELIPKI 78 >gi|27468042|ref|NP_764679.1| hypothetical protein SE1124 [Staphylococcus epidermidis ATCC 12228] gi|57866930|ref|YP_188584.1| hypothetical protein SERP1007 [Staphylococcus epidermidis RP62A] gi|242242718|ref|ZP_04797163.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] gi|251810865|ref|ZP_04825338.1| conserved hypothetical protein [Staphylococcus epidermidis BCM-HMP0060] gi|282876129|ref|ZP_06284996.1| scaffold protein Nfu/NifU N-terminal domain protein [Staphylococcus epidermidis SK135] gi|293366594|ref|ZP_06613271.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|27315587|gb|AAO04721.1|AE016747_218 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57637588|gb|AAW54376.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A] gi|242233854|gb|EES36166.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] gi|251805545|gb|EES58202.1| conserved hypothetical protein [Staphylococcus epidermidis BCM-HMP0060] gi|281295154|gb|EFA87681.1| scaffold protein Nfu/NifU N-terminal domain protein [Staphylococcus epidermidis SK135] gi|291319363|gb|EFE59732.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|319400790|gb|EFV89009.1| scaffold Nfu/NifU family protein [Staphylococcus epidermidis FRI909] gi|329731570|gb|EGG67932.1| scaffold protein Nfu/NifU N-terminal domain protein [Staphylococcus epidermidis VCU144] gi|329735279|gb|EGG71571.1| scaffold protein Nfu/NifU N-terminal domain protein [Staphylococcus epidermidis VCU045] gi|329737394|gb|EGG73648.1| scaffold protein Nfu/NifU N-terminal domain protein [Staphylococcus epidermidis VCU028] Length = 86 Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 7 DTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK- 65 +TPN T+K + + ++ A+E + +R+F I G+ S+++ DFI++ K Sbjct: 8 ETPNHNTMKVSLSEPRQDNSSTTYTAAQEGQ-PEFINRLFEIEGVKSIFYVLDFISIDKE 66 Query: 66 DQYDWEHLRPPV 77 D +W L P + Sbjct: 67 DNANWNELLPQI 78 >gi|257460305|ref|ZP_05625408.1| nitrogen fixation protein NifU [Campylobacter gracilis RM3268] gi|257442370|gb|EEV17510.1| nitrogen fixation protein NifU [Campylobacter gracilis RM3268] Length = 333 Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYR---DGI--VFLSMRGACSGCPSASETLKYGVANI 175 ++ VLD +RP + DGG++ R DG +++ GACSGC S + Y + N+ Sbjct: 260 VEGVLDEDIRPMLQMDGGNLDVIDIRPADDGKTDIYIRYLGACSGCASGASGTLYAIENV 319 Query: 176 LN-HFVPEVK 184 L + P ++ Sbjct: 320 LQENLSPNIR 329 >gi|255529963|ref|YP_003090335.1| nitrogen-fixing NifU domain-containing protein [Pedobacter heparinus DSM 2366] gi|255342947|gb|ACU02273.1| nitrogen-fixing NifU domain protein [Pedobacter heparinus DSM 2366] Length = 81 Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust. Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANI 175 + +++++ L+ +RP + DGGD+ + + +V L + G C C + T+K G+ Sbjct: 3 LTEQVEQALET-IRPYLIADGGDVAIEEITPENVVRLKLLGNCGSCKMSFMTMKAGIEQA 61 Query: 176 LNHFVPEVKDIRTV 189 + VP++ + V Sbjct: 62 IMKSVPQITAVEAV 75 >gi|192293449|ref|YP_001994054.1| Fe-S cluster assembly protein NifU [Rhodopseudomonas palustris TIE-1] gi|192287198|gb|ACF03579.1| Fe-S cluster assembly protein NifU [Rhodopseudomonas palustris TIE-1] Length = 328 Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 27/51 (52%) Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +RP + RDGGD F IV++ + G C GC +S TL A ++ F Sbjct: 268 LRPHLQRDGGDCEFVSLDGNIVYVRLSGNCVGCQLSSVTLSGVQAKLVEKF 318 >gi|39937667|ref|NP_949943.1| putative nifU protein [Rhodopseudomonas palustris CGA009] gi|39651526|emb|CAE30049.1| putative nifU protein [Rhodopseudomonas palustris CGA009] Length = 328 Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 27/51 (52%) Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +RP + RDGGD F IV++ + G C GC +S TL A ++ F Sbjct: 268 LRPHLQRDGGDCEFVSLDGNIVYVRLSGNCVGCQLSSVTLSGVQAKLVEKF 318 >gi|1709290|sp|Q10373|NIFU2_RHOCA RecName: Full=Nitrogen fixation protein nifU 2 gi|46075|emb|CAA44879.1| nifUII [Rhodobacter capsulatus] gi|249288|gb|AAA08742.1| NifU2 [Rhodobacter capsulatus] Length = 142 Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 7/79 (8%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL--- 168 E ++AVV L +RP RDGGDI G V + + G+C+GC ++ TL Sbjct: 67 EEEAAVVAE----LIAEMRPMFQRDGGDIELIGLTGATVQVRLSGSCAGCMMSARTLSTV 122 Query: 169 KYGVANILNHFVPEVKDIR 187 ++ + L V V +IR Sbjct: 123 QHQLIETLGRPVRVVPEIR 141 >gi|302825922|ref|XP_002994529.1| hypothetical protein SELMODRAFT_48861 [Selaginella moellendorffii] gi|300137483|gb|EFJ04406.1| hypothetical protein SELMODRAFT_48861 [Selaginella moellendorffii] Length = 126 Score = 38.1 bits (87), Expect = 0.53, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Query: 147 DGIVF-LSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 DG+V L ++GAC CPS+ T+K G+ L +PE+ + V Sbjct: 5 DGLVVKLKLQGACGSCPSSLMTMKMGIEARLKEKIPEIIGVEQV 48 >gi|229590129|ref|YP_002872248.1| hypothetical protein PFLU2664 [Pseudomonas fluorescens SBW25] gi|259511745|sp|C3K9S0|NFUA_PSEFS RecName: Full=Fe/S biogenesis protein nfuA gi|229361995|emb|CAY48896.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 194 Score = 38.1 bits (87), Expect = 0.53, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 1/80 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + +DS V +RI L + P +A GG + + DGI L G C GC A TL+ Sbjct: 104 VNADSPVNERINYYLQTEINPGLASHGGQVSLIDVVDDGIAVLKFGGGCQGCGQADVTLR 163 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ L +PE+K +R V Sbjct: 164 EGIERTLLERIPELKGVRDV 183 >gi|296329494|ref|ZP_06871981.1| putative lyase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674819|ref|YP_003866491.1| putative lyase [Bacillus subtilis subsp. spizizenii str. W23] gi|296153376|gb|EFG94238.1| putative lyase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413063|gb|ADM38182.1| putative lyase [Bacillus subtilis subsp. spizizenii str. W23] Length = 377 Score = 38.1 bits (87), Expect = 0.54, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I + + + ++ + P+ + I I G+ VY DF+ V + Sbjct: 7 EPTPSPNTMKVILTEELPAGKSNNYKPDQAEGAPPVIAEILKIEGVKGVYHVADFLAVER 66 Query: 66 D-QYDWEHLRPPV 77 + +YDW+ + P V Sbjct: 67 NARYDWKDILPQV 79 >gi|169827750|ref|YP_001697908.1| hypothetical protein Bsph_2211 [Lysinibacillus sphaericus C3-41] gi|168992238|gb|ACA39778.1| Hypothetical ypgR protein [Lysinibacillus sphaericus C3-41] Length = 375 Score = 38.1 bits (87), Expect = 0.54, Method: Compositional matrix adjust. Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 2/100 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E TP+P ++K + + + +F+ + E + A+ I +I GI VY DF Sbjct: 4 ITIEPTPSPNSMKIVVDTELPFGKSYNFTKDNKDEATGEAAAILAIEGIKGVYHVADFFA 63 Query: 63 VGKD-QYDWEHLRPPVLGMIMEHFISGD-PIIHNGGLGDM 100 V ++ +Y WE + + ++ E + D P++ N G++ Sbjct: 64 VERNAKYAWEGILASIRQVLGEDVETQDEPMVANEFYGEV 103 >gi|134300122|ref|YP_001113618.1| NifU domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052822|gb|ABO50793.1| nitrogen-fixing NifU domain protein [Desulfotomaculum reducens MI-1] Length = 45 Score = 38.1 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 3/44 (6%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSG 160 +R++E L+ +VRP + RDGGD+ G + GIV + ++GAC G Sbjct: 3 ERVQEALE-KVRPFLQRDGGDVELVGVDETSGIVKVKLKGACGG 45 >gi|89095072|ref|ZP_01167999.1| yhgI protein [Oceanospirillum sp. MED92] gi|89080633|gb|EAR59878.1| yhgI protein [Oceanospirillum sp. MED92] Length = 197 Score = 38.1 bits (87), Expect = 0.56, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI----VFKGYRDGIVFLSMRGACSGCPSASE 166 + DS + ++I +L + + P +A GGD+ V + I L G C GC + Sbjct: 103 VSPDSPIDEQINYILYSEINPGLAAHGGDVKLMEVVEEEEGHIAVLQFGGGCQGCSAVDM 162 Query: 167 TLKYGVANILNHFVPEVKDIRTV 189 TLK GV L + + +R V Sbjct: 163 TLKDGVEATLVERIDSLVGVRDV 185 >gi|182677480|ref|YP_001831626.1| NifU domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182633363|gb|ACB94137.1| nitrogen-fixing NifU domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 106 Score = 38.1 bits (87), Expect = 0.57, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Query: 101 KLDDMGSGDFIESDSAVVQR--IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGAC 158 K + G+ + + A +R I E +++ +RP + RD GD + VF+ M GAC Sbjct: 11 KAPEEGAAEVVSDAVAAARRQLIAETIES-IRPNLQRDKGDCELIDVQGDKVFVKMTGAC 69 Query: 159 SGCPSASETL 168 GC +S TL Sbjct: 70 VGCQLSSMTL 79 >gi|295400424|ref|ZP_06810403.1| nitrogen-fixing NifU domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|294977699|gb|EFG53298.1| nitrogen-fixing NifU domain protein [Geobacillus thermoglucosidasius C56-YS93] Length = 283 Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 R+ L+ VRP + GG + ++ ++GACSGC ++ TLK GV + Sbjct: 92 RVAAALEE-VRPYMRSHGGGVELVEVEGKTAYVRLQGACSGCSLSAVTLKNGVEEAIKAR 150 Query: 180 VP 181 VP Sbjct: 151 VP 152 >gi|307244961|ref|ZP_07527058.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253914|ref|ZP_07535766.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258368|ref|ZP_07540109.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854126|gb|EFM86334.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863118|gb|EFM95060.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867552|gb|EFM99399.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 199 Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ ++R+ V+ +V P +A GG + + D L G C+GC TLK Sbjct: 108 VADDAPFIERLDYVIQTQVNPQLASHGGRVTLIEVTEDKYAILQFGGGCNGCSMVDVTLK 167 Query: 170 YGV-ANILNHFVPEVKDIRTV 189 G+ +L F E+ ++ V Sbjct: 168 EGIEKQLLAMFHDELAGVKDV 188 >gi|28188323|gb|AAL91100.1| NifU [Entamoeba histolytica] Length = 348 Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETLKYGV 172 + ++ +V + + P V +DGG + +DG IV++ G C GC +A+ K + Sbjct: 246 ISKLNQVFEQYIDPIVKKDGGSVEVYEVKDGVNGEIIVYIQYSGKCVGCAAANGATKEKI 305 Query: 173 ANIL 176 IL Sbjct: 306 QTIL 309 >gi|170721075|ref|YP_001748763.1| IscR-regulated protein YhgI [Pseudomonas putida W619] gi|254767314|sp|B1J6F5|NFUA_PSEPW RecName: Full=Fe/S biogenesis protein nfuA gi|169759078|gb|ACA72394.1| IscR-regulated protein YhgI [Pseudomonas putida W619] Length = 194 Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETL 168 + DS + +RI L + P +A GG + + DGI L G C GC A TL Sbjct: 103 MVNEDSPINERINYYLQTEINPGLASHGGQVSLVDVVDDGIAVLQFGGGCQGCGQADVTL 162 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ L +PE+K +R V Sbjct: 163 KDGIERTLLERIPELKGVRDV 183 >gi|67481077|ref|XP_655888.1| Fe-S cluster assembly protein NifU [Entamoeba histolytica HM-1:IMSS] gi|21654852|gb|AAK85709.1| iron-sulfur cluster NifU-like protein [Entamoeba histolytica] gi|56473060|gb|EAL50508.1| Fe-S cluster assembly protein NifU, putative [Entamoeba histolytica HM-1:IMSS] Length = 348 Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETLKYGV 172 + ++ +V + + P V +DGG + +DG IV++ G C GC +A+ K + Sbjct: 246 ISKLNQVFEQYIDPIVKKDGGSVEVYEVKDGVNGEIIVYIQYSGKCVGCAAANGATKEKI 305 Query: 173 ANIL 176 IL Sbjct: 306 QTIL 309 >gi|330503471|ref|YP_004380340.1| HesB/YadR/YfhF family protein [Pseudomonas mendocina NK-01] gi|328917757|gb|AEB58588.1| HesB/YadR/YfhF-family protein [Pseudomonas mendocina NK-01] Length = 194 Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETL 168 + DS + +RI L + P +A GG + D GI L G C GC A TL Sbjct: 103 MVNEDSPLNERINYYLQTEINPGLASHGGQVSLVDVVDEGIAVLQFGGGCQGCGQADYTL 162 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ L +PE+K +R V Sbjct: 163 KEGIEKTLLERIPELKGVRDV 183 >gi|104782423|ref|YP_608921.1| hypothetical protein PSEEN3379 [Pseudomonas entomophila L48] gi|122402793|sp|Q1I898|NFUA_PSEE4 RecName: Full=Fe/S biogenesis protein nfuA gi|95111410|emb|CAK16130.1| conserved hypothetical protein [Pseudomonas entomophila L48] Length = 194 Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETL 168 + DS + +RI L + P +A GG + + DGI L G C GC A TL Sbjct: 103 MVNEDSPINERINYYLQTEINPGLASHGGAVSLVDVVDDGIAVLQFGGGCQGCGQADVTL 162 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ L +PE+K +R V Sbjct: 163 KEGIERTLLERIPELKGVRDV 183 >gi|154244065|ref|YP_001415023.1| NifU domain-containing protein [Xanthobacter autotrophicus Py2] gi|154158150|gb|ABS65366.1| nitrogen-fixing NifU domain protein [Xanthobacter autotrophicus Py2] Length = 121 Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 I+EV++ +RP + RDGGD V + M GAC C ASET++ Sbjct: 21 IREVIEE-IRPNLKRDGGDCELVEIDGNKVMVKMTGACVFCKLASETIE 68 >gi|17228187|ref|NP_484735.1| hypothetical protein alr0692 [Nostoc sp. PCC 7120] gi|17130037|dbj|BAB72649.1| alr0692 [Nostoc sp. PCC 7120] Length = 158 Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANI 175 ++QR++ L+ VRP + GD+ + V + G CS CP+++ TL GV Sbjct: 85 LLQRVQAALEE-VRPGLKDHHGDVELVAIKPPDTVEVRFIGTCSSCPASTLTLSQGVEQA 143 Query: 176 LNHFVPEV 183 + PE+ Sbjct: 144 IKALCPEI 151 >gi|73662619|ref|YP_301400.1| hypothetical protein SSP1310 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123775356|sp|Q49XP0|CVFC_STAS1 RecName: Full=Conserved virulence factor C gi|72495134|dbj|BAE18455.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 372 Score = 37.7 bits (86), Expect = 0.67, Method: Compositional matrix adjust. Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 2/100 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + ++ + + + + ++ G+ S+++ DF+ Sbjct: 4 VRVEPTPSPNTMKIVLNEKRKDNKSNTYTTILDNQ-PKFINDVLAVDGVKSIFYVMDFLA 62 Query: 63 VGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMK 101 V K +YDWE L P V + + S D + G++K Sbjct: 63 VDKKPKYDWEVLLPKVTATLSDESESIDTPAPDEHFGEVK 102 >gi|317128638|ref|YP_004094920.1| Scaffold protein Nfu/NifU [Bacillus cellulosilyticus DSM 2522] gi|315473586|gb|ADU30189.1| Scaffold protein Nfu/NifU [Bacillus cellulosilyticus DSM 2522] Length = 372 Score = 37.7 bits (86), Expect = 0.69, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 3/84 (3%) Query: 2 FIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISP-LASRIFSIPGIASVYFGYDF 60 I E TP+P T+K Q L +G H + +E +P +F + G+ VY DF Sbjct: 3 IISVEPTPSPNTMKLTLSQ-SLPQGKAHNYTKETSEGAPSFVQDLFKVEGVKGVYHVADF 61 Query: 61 ITVGKD-QYDWEHLRPPVLGMIME 83 I V + + DW+ + P V + E Sbjct: 62 IAVERHPKVDWKVILPEVRAVFGE 85 >gi|128317|sp|P23121|NIFU_AZOCH RecName: Full=Nitrogen fixation protein nifU gi|142387|gb|AAA22159.1| nifU [Azotobacter chroococcum] Length = 309 Score = 37.7 bits (86), Expect = 0.69, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 ++RI+ VL +RP + RD GD+ +++ + GAC+GC AS TL Sbjct: 231 IRRIETVLAA-IRPTLQRDKGDVELIDVDGKNIYVKLTGACTGCQMASMTL 280 >gi|312111050|ref|YP_003989366.1| nitrogen-fixing NifU domain protein [Geobacillus sp. Y4.1MC1] gi|311216151|gb|ADP74755.1| nitrogen-fixing NifU domain protein [Geobacillus sp. Y4.1MC1] Length = 283 Score = 37.7 bits (86), Expect = 0.70, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 27/53 (50%) Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP 181 VRP + GG + ++ ++GACSGC ++ TLK GV + VP Sbjct: 100 VRPYMRSHGGGVELVEVEGKTAYVRLQGACSGCSLSAVTLKNGVEEAIKARVP 152 >gi|229916484|ref|YP_002885130.1| Scaffold protein Nfu/NifU [Exiguobacterium sp. AT1b] gi|229467913|gb|ACQ69685.1| Scaffold protein Nfu/NifU [Exiguobacterium sp. AT1b] Length = 82 Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 4/78 (5%) Query: 2 FIQTEDTPNPATLKFIPGQVVLVEGAIHFS-NAKEAEISPLASRIFSIPGIASVYFGYDF 60 ++ + TPNP +K + V GA S A EA PL +++ I G+ SV+ DF Sbjct: 1 MLRIDPTPNPNAMKVTLPENVF--GAKSQSVKAGEATDQPLLAKLVEIEGVESVFAYGDF 58 Query: 61 ITVGKDQ-YDWEHLRPPV 77 +TV K+ WE + P V Sbjct: 59 VTVSKENGVSWEAILPHV 76 >gi|326385392|ref|ZP_08207036.1| nitrogen fixation protein nifU [Novosphingobium nitrogenifigens DSM 19370] gi|326210109|gb|EGD60882.1| nitrogen fixation protein nifU [Novosphingobium nitrogenifigens DSM 19370] Length = 307 Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 ++ I+E L++ +RP++ RDGGD V + + GAC GC +S T++ Sbjct: 234 IRLIEETLES-IRPSLQRDGGDCELVDVEGNRVMVKLTGACVGCHLSSATIE 284 >gi|321311654|ref|YP_004203941.1| putative lyase [Bacillus subtilis BSn5] gi|320017928|gb|ADV92914.1| putative lyase [Bacillus subtilis BSn5] Length = 377 Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I + + + ++ + P+ + I I G+ VY DF+ V + Sbjct: 7 EPTPSPNTMKVILTEELPAGKSNNYKPEQAEGAPPVIADILKIDGVKGVYHVADFLAVER 66 Query: 66 D-QYDWEHLRPPV 77 + +YDW+ + P V Sbjct: 67 NARYDWKDILPQV 79 >gi|126462944|ref|YP_001044058.1| NifU domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126104608|gb|ABN77286.1| nitrogen-fixing NifU domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 246 Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 I EV+++ VRP + DGGD+ V + + GACSGC A+ TL Sbjct: 168 IAEVIES-VRPRLRADGGDVTLVAVEGSKVRVHLTGACSGCQLAALTL 214 >gi|254457488|ref|ZP_05070916.1| nitrogen fixation protein NifU [Campylobacterales bacterium GD 1] gi|207086280|gb|EDZ63564.1| nitrogen fixation protein NifU [Campylobacterales bacterium GD 1] Length = 324 Score = 37.4 bits (85), Expect = 0.88, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 9/80 (11%) Query: 117 VVQRIKEV---LDNRVRPAVARDGGDI----VFKGYRDGIVFLSMRGACSGCPSASETLK 169 +VQ+IK V +D VR + DGGD+ + KG +++ GAC+GC S+S Sbjct: 245 LVQQIKAVDAVIDESVRQFLVMDGGDMEVIDIKKGDEYIDIYIRYLGACNGCASSSTGTL 304 Query: 170 YGVANILNHFVPEVKDIRTV 189 Y + + L + K+IR + Sbjct: 305 YAIESTLKEKLS--KNIRVL 322 >gi|289209036|ref|YP_003461102.1| nitrogen-fixing NifU domain protein [Thioalkalivibrio sp. K90mix] gi|288944667|gb|ADC72366.1| nitrogen-fixing NifU domain protein [Thioalkalivibrio sp. K90mix] Length = 299 Score = 37.4 bits (85), Expect = 0.90, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 29/57 (50%) Query: 130 RPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 R + +DGGDI F V + ++GAC GCP ++ LK V ++ P V + Sbjct: 239 RRILMQDGGDIEFVELDGRTVRVRLKGACVGCPRSTLDLKNVVERLVRSRAPGVASV 295 >gi|77464100|ref|YP_353604.1| nitrogen fixation protein [Rhodobacter sphaeroides 2.4.1] gi|266628|sp|Q01180|NIFU_RHOSH RecName: Full=Nitrogen fixation protein nifU gi|151967|gb|AAA26136.1| nifU [Rhodobacter sphaeroides] gi|77388518|gb|ABA79703.1| Nitrogen fixation protein [Rhodobacter sphaeroides 2.4.1] Length = 246 Score = 37.4 bits (85), Expect = 0.91, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 I EV+++ VRP + DGGD+ V + + GACSGC A+ TL Sbjct: 168 IAEVIES-VRPRLRADGGDVTLVAVEGSKVRVHLTGACSGCQLAALTL 214 >gi|332558975|ref|ZP_08413297.1| nitrogen fixation protein [Rhodobacter sphaeroides WS8N] gi|332276687|gb|EGJ22002.1| nitrogen fixation protein [Rhodobacter sphaeroides WS8N] Length = 246 Score = 37.4 bits (85), Expect = 0.93, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 I EV+++ VRP + DGGD+ V + + GACSGC A+ TL Sbjct: 168 IAEVIES-VRPRLRADGGDVTLVAVEGSKVRVHLTGACSGCQLAALTL 214 >gi|323703949|ref|ZP_08115578.1| nitrogen-fixing NifU domain protein [Desulfotomaculum nigrificans DSM 574] gi|323531084|gb|EGB20994.1| nitrogen-fixing NifU domain protein [Desulfotomaculum nigrificans DSM 574] Length = 44 Score = 37.4 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 2/43 (4%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSG 160 +++KE L+ ++RP + RDGGD+ D G+V + +RGAC G Sbjct: 3 EKVKEALE-KIRPFLQRDGGDVELVDVDDNGVVKVKLRGACGG 44 >gi|212639454|ref|YP_002315974.1| HEAT repeats containing protein [Anoxybacillus flavithermus WK1] gi|212560934|gb|ACJ33989.1| HEAT repeats containing protein [Anoxybacillus flavithermus WK1] Length = 379 Score = 37.4 bits (85), Expect = 0.96, Method: Compositional matrix adjust. Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 12/110 (10%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 M IQ E TP+P T+K + + + + ++ ++ + + ++ I G+ +Y D Sbjct: 1 MKIQAIEPTPSPNTMKVLLDEELPFGTSYNYKPSQAEQAPEIIQQLLKIEGVKGIYHVAD 60 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHF------ISGDPIIHNGGLGDMKL 102 F+ V + +YDW+ P+L + E F + + + N G++K+ Sbjct: 61 FLAVERHAKYDWK----PILTKVREVFGEQVEPLQENKAVRNDHFGEVKV 106 >gi|146307188|ref|YP_001187653.1| HesB/YadR/YfhF-family protein [Pseudomonas mendocina ymp] gi|254767311|sp|A4XUA5|NFUA_PSEMY RecName: Full=Fe/S biogenesis protein nfuA gi|145575389|gb|ABP84921.1| HesB/YadR/YfhF-family protein [Pseudomonas mendocina ymp] Length = 194 Score = 37.4 bits (85), Expect = 0.97, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETL 168 + DS + +RI L + P +A GG + + +GI L G C GC A TL Sbjct: 103 MVNEDSPLNERINYYLQTEINPGLASHGGQVSLVDVVEEGIAVLRFGGGCQGCGQADYTL 162 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ L +PE+K +R V Sbjct: 163 KEGIEKTLLERIPELKGVRDV 183 >gi|75120873|sp|Q6DW75|DGDG2_SOYBN RecName: Full=Digalactosyldiacylglycerol synthase 2, chloroplastic gi|49617331|gb|AAT67421.1| digalactosyldiacylglycerol synthase 2 [Glycine max] Length = 463 Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 7/79 (8%) Query: 93 HNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFL 152 H L +++D GSG+ DS VQ+ E L+ VR ARD D +F Y+ +FL Sbjct: 253 HEKELSALEVDLFGSGE----DSDEVQKAAEKLELAVRVHPARDHADALFHDYK---LFL 305 Query: 153 SMRGACSGCPSASETLKYG 171 + C + +E L G Sbjct: 306 NPSTTDVVCTTTAEALAMG 324 >gi|163783768|ref|ZP_02178753.1| hypothetical protein HG1285_09916 [Hydrogenivirga sp. 128-5-R1-1] gi|159880957|gb|EDP74476.1| hypothetical protein HG1285_09916 [Hydrogenivirga sp. 128-5-R1-1] Length = 83 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 +++VL+ ++RPA+ G + DG+V+L G CS CP +LK Sbjct: 9 VEKVLE-KIRPALKDHQGSLKIVNIEDGVVYLQFVGGCSDCPVVDVSLK 56 >gi|226946904|ref|YP_002801977.1| NifU C-terminal domain-containing protein AnfU [Azotobacter vinelandii DJ] gi|226721831|gb|ACO81002.1| NifU C-terminal domain-containing protein, AnfU [Azotobacter vinelandii DJ] Length = 96 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 6/45 (13%) Query: 127 NRVRPAVARDGGD---IVFKGYRDGIVFLSMRGACSGCPSASETL 168 R+RP + DGGD + GY+ V L ++G C+GC ++ ETL Sbjct: 29 ERLRPGLQADGGDMEIVSIDGYK---VRLRLKGMCAGCTASGETL 70 >gi|146282569|ref|YP_001172722.1| yhgI protein [Pseudomonas stutzeri A1501] gi|254767315|sp|A4VLM9|NFUA_PSEU5 RecName: Full=Fe/S biogenesis protein nfuA gi|145570774|gb|ABP79880.1| yhgI protein [Pseudomonas stutzeri A1501] gi|327480826|gb|AEA84136.1| yhgI protein [Pseudomonas stutzeri DSM 4166] Length = 194 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETL 168 + DS + +RI L + P +A GG + +GI L G C GC A TL Sbjct: 103 MVNEDSPMNERINYYLQTEINPGLASHGGQVTLIDVVEEGIAVLQFGGGCQGCGQADVTL 162 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ L +PE+K +R V Sbjct: 163 KEGIEKTLLARIPELKGVRDV 183 >gi|91975564|ref|YP_568223.1| nitrogen-fixing NifU-like [Rhodopseudomonas palustris BisB5] gi|91682020|gb|ABE38322.1| nitrogen-fixing NifU-like [Rhodopseudomonas palustris BisB5] Length = 331 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 I E LD +RP + RDGGD +V++ + G C GC +S TL Sbjct: 264 IAEALDE-LRPHLKRDGGDCELVNVEGNVVYVRLSGNCVGCQLSSLTL 310 >gi|316936083|ref|YP_004111065.1| Fe-S cluster assembly protein NifU [Rhodopseudomonas palustris DX-1] gi|315603797|gb|ADU46332.1| Fe-S cluster assembly protein NifU [Rhodopseudomonas palustris DX-1] Length = 329 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 26/51 (50%) Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +RP + RDGGD F IV++ + G C GC +S TL A + F Sbjct: 269 LRPHLQRDGGDCEFVSLDGNIVYVRLTGNCVGCQLSSVTLSGVQARLAEKF 319 >gi|147678467|ref|YP_001212682.1| hypothetical protein PTH_2132 [Pelotomaculum thermopropionicum SI] gi|146274564|dbj|BAF60313.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 47 Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSG 160 A+ ++++EVL N+VRP + RDGGD+ G+V + ++GAC G Sbjct: 3 AMKEKVQEVL-NKVRPFLQRDGGDVELVDVDASGLVKVRLKGACGG 47 >gi|221639965|ref|YP_002526227.1| nitrogen fixation protein nifU [Rhodobacter sphaeroides KD131] gi|221160746|gb|ACM01726.1| Nitrogen fixation protein nifU [Rhodobacter sphaeroides KD131] Length = 246 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 I EV+++ VRP + DGGD+ V + + GACSGC A+ TL Sbjct: 168 IAEVIES-VRPRLRADGGDVTLVAVEGSKVRVHLTGACSGCQLAALTL 214 >gi|7387939|sp|Q43909|NIFU_AZOBR RecName: Full=Nitrogen fixation protein nifU gi|1597738|gb|AAC46176.1| nifU [Azospirillum brasilense] Length = 310 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%) Query: 118 VQRIKEVL--DNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 VQR+++++ RP + RDGGD+ +++ + GACSGC ++ T+ Sbjct: 231 VQRMQKIMFAIEDWRPQIQRDGGDVELVDIDGKDIYVRLTGACSGCSQSAGTM 283 >gi|152975403|ref|YP_001374920.1| HEAT repeat-containing PBS lyase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024155|gb|ABS21925.1| PBS lyase HEAT domain protein repeat-containing protein [Bacillus cytotoxicus NVH 391-98] Length = 375 Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I +V+ +++ + I I GI VY DF+ V + Sbjct: 7 EPTPSPNTMKVILNEVLPAGARNNYTKENVDQAPEQVQHILKIEGIKGVYHVADFLAVER 66 Query: 66 D-QYDWEHL 73 + +YDW+ L Sbjct: 67 NAKYDWKVL 75 >gi|57864874|gb|AAW57048.1| nitrogen fixation protein U [cyanobacterium endosymbiont of Rhopalodia gibba] Length = 110 Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 7/64 (10%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I+++L V+PA A+DGGD+ D ++++GACS S++ TL+ + + L + Sbjct: 48 IQKILKEEVKPAPAQDGGDV------DLFNKVTLKGACSSFMSSAATLENAIKSRLRDCI 101 Query: 181 -PEV 183 PE+ Sbjct: 102 SPEL 105 >gi|110636942|ref|YP_677149.1| hypothetical protein CHU_0522 [Cytophaga hutchinsonii ATCC 33406] gi|110279623|gb|ABG57809.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406] Length = 265 Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust. Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 11/147 (7%) Query: 35 EAEISPLASRIFSIPGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIM------EHFISG 88 E + L R+ + G ++ F F T +Y R + + + EH ++G Sbjct: 39 ETPVQALTLRLTPMAGADTLKFNTSFTTENNVRYTLASFRYYMSDIRLVKKDGTEHALAG 98 Query: 89 DPIIHNGGLGDMKLDDMGSGDFIESDSAV-VQRIKEVLDNRVRPA---VARDGGDIVFKG 144 ++ N D L ++ +GD+ AV + + D V PA +A I + Sbjct: 99 KVLLINANTSDYALGNVPAGDYAGIRFAVGLDAVTNHADPTVYPAAHPLAIQSPGIHW-S 157 Query: 145 YRDGIVFLSMRGACSGCPSASETLKYG 171 + G +FLSM G C ++ L +G Sbjct: 158 WNSGYIFLSMEGTCDTTAVNNDVLTFG 184 >gi|209696309|ref|YP_002264240.1| putative DNA uptake protein [Aliivibrio salmonicida LFI1238] gi|254767289|sp|B6ENV8|NFUA_ALISL RecName: Full=Fe/S biogenesis protein nfuA gi|208010263|emb|CAQ80595.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 194 Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ + +R++ + +V P +A GG + + + GI + G C+GC TLK Sbjct: 103 VNDDAPLFERVEYAIQTQVNPQLAGHGGHVSLMEITEAGIAIVQFGGGCNGCSMVDVTLK 162 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ ++ Sbjct: 163 EGIEKELLAQFEGELTAVK 181 >gi|59713068|ref|YP_205844.1| putative DNA uptake protein [Vibrio fischeri ES114] gi|197336442|ref|YP_002157246.1| IscR-regulated protein YhgI [Vibrio fischeri MJ11] gi|75353229|sp|Q5E1Z0|NFUA_VIBF1 RecName: Full=Fe/S biogenesis protein nfuA gi|254767334|sp|B5FCD0|NFUA_VIBFM RecName: Full=Fe/S biogenesis protein nfuA gi|59481169|gb|AAW86956.1| predicted gluconate transport associated protein [Vibrio fischeri ES114] gi|197317932|gb|ACH67379.1| IscR-regulated protein YhgI [Vibrio fischeri MJ11] Length = 194 Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ + +R++ + +V P +A GG + D G+ + G C+GC TLK Sbjct: 103 VADDAPLFERVEYAIQTQVNPQLAGHGGHVSLMEINDEGVAIVQFGGGCNGCSMVDVTLK 162 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ ++ Sbjct: 163 EGIEKELLVQFEGELTAVK 181 >gi|15617137|ref|NP_240350.1| hypothetical protein BU544 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219682444|ref|YP_002468828.1| iron-sulfur cluster scaffold protein (YhgI) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|11387308|sp|P57609|NFUA_BUCAI RecName: Full=Fe/S biogenesis protein nfuA gi|254767293|sp|B8D868|NFUA_BUCAT RecName: Full=Fe/S biogenesis protein nfuA gi|25356744|pir||D84993 hypothetical protein [imported] - Buchnera sp. (strain APS) gi|10039202|dbj|BAB13236.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622177|gb|ACL30333.1| iron-sulfur cluster scaffold protein (YhgI) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086840|gb|ADP66921.1| iron-sulfur cluster scaffold protein (YhgI) [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087429|gb|ADP67509.1| iron-sulfur cluster scaffold protein (YhgI) [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087919|gb|ADP67998.1| iron-sulfur cluster scaffold protein (YhgI) [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 192 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 S++ +++K L+ + P ++ GG + + K ++GI + G C+GC TLK V Sbjct: 106 SSLEEKVKCFLNLEINPQLSMHGGRVELIKIDKNGIAAIQFSGGCNGCSMIGSTLKETVE 165 Query: 174 NILNHFVPEVKDI 186 L E+K + Sbjct: 166 KKLLSSFSEIKKV 178 >gi|311086265|gb|ADP66347.1| iron-sulfur cluster scaffold protein (YhgI) [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 192 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 S++ +++K L+ + P ++ GG + + K ++GI + G C+GC TLK V Sbjct: 106 SSLEEKVKCFLNLEINPQLSMHGGRVELIKIDKNGIAAIQFSGGCNGCSMIGSTLKETVE 165 Query: 174 NILNHFVPEVKDI 186 L E+K + Sbjct: 166 KKLLSSFSEIKKV 178 >gi|57505685|ref|ZP_00371611.1| nifU protein homolog Cj0239c [Campylobacter upsaliensis RM3195] gi|57015958|gb|EAL52746.1| nifU protein homolog Cj0239c [Campylobacter upsaliensis RM3195] Length = 323 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGD---IVFKGYRDGIVFLSMR--GACSGCPSASETLKYGV 172 ++ ++ VLD +RP + DGGD I + G + + +R GAC GC S + Y + Sbjct: 247 LKAVEAVLDAEIRPMLQGDGGDMEVIDLQKAEGGAIDIYIRYLGACGGCSSGTGATLYAI 306 Query: 173 ANILNH 178 +IL Sbjct: 307 ESILQE 312 >gi|170292214|pdb|2K1H|A Chain A, Solution Nmr Structure Of Ser13 From Staphylococcus Epidermidis. Northeast Structural Genomics Consortium Target Ser13 Length = 94 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 7 DTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK- 65 +TPN T+K + ++ A+E + +R+F I G+ S+++ DFI++ K Sbjct: 8 ETPNHNTMKVSLSEPRQDNSFTTYTAAQEGQ-PEFINRLFEIEGVKSIFYVLDFISIDKE 66 Query: 66 DQYDWEHLRPPV 77 D +W L P + Sbjct: 67 DNANWNELLPQI 78 >gi|508310|gb|AAA22184.1| nitrogen fixation protein [Azospirillum brasilense] Length = 307 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Query: 117 VVQRIKEVL--DNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 QR++ ++ +RP + RDGGD+ +++ + GACSGC ++ ++ Sbjct: 229 TCQRMRRIMFAIEELRPQIQRDGGDVELVDIDGKDIYVRLTGACSGCSQSAASM 282 >gi|50955615|ref|YP_062903.1| hypothetical protein Lxx21000 [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952097|gb|AAT89798.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 156 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 33/73 (45%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 D ++ + ++LD + GG DG+V L + G C CP+A +T+ + Sbjct: 72 DESLRAALVQLLDGAAGDFIRSHGGRPTIVSVHDGVVTLRLGGTCGACPAAGQTVATRIT 131 Query: 174 NILNHFVPEVKDI 186 L PEV+ + Sbjct: 132 AQLRESHPEVRCV 144 >gi|242372428|ref|ZP_04818002.1| excinuclease subunit A [Staphylococcus epidermidis M23864:W1] gi|242349850|gb|EES41451.1| excinuclease subunit A [Staphylococcus epidermidis M23864:W1] Length = 752 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 33/151 (21%), Positives = 67/151 (44%), Gaps = 34/151 (22%) Query: 24 VEGAIHF-----SNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKDQYDW-------- 70 ++ A+HF SN + I PL ++ ++ Y G +++T+ ++ Sbjct: 288 IDDAVHFLENINSNTAKVIIEPLKQQLQALS-----YIGLNYLTLSRETTSLSGGESQRI 342 Query: 71 ---EHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDM--------GSGDFIESDSAVVQ 119 HL P+ ++ +I +P + +++DM + +E D V+Q Sbjct: 343 KLIRHLNSPLSDLV---YIIDEPSVGLHPEDIQRINDMIQSLKEKGNTVLVVEHDPDVIQ 399 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIV 150 V+D + P +DGG+I+F+G DG++ Sbjct: 400 TADHVID--IGPNAGKDGGEIMFEGTYDGLL 428 >gi|213865552|ref|ZP_03387671.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 169 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 + D+ +++R++ L +++ P +A GG + D G L G C+GC TLK Sbjct: 101 VADDAPLMERVEYALQSQINPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV 172 G+ Sbjct: 161 EGI 163 >gi|195952780|ref|YP_002121070.1| nitrogen-fixing NifU domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932392|gb|ACG57092.1| nitrogen-fixing NifU domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 83 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 +Q ++ +L +RPA+ G++ +D +V+L G CS CP ++K Sbjct: 5 LQEVERIL-QMIRPALDTHHGNLKLVDVKDNVVYLQFEGGCSDCPVVDMSVK 55 >gi|187250848|ref|YP_001875330.1| Fe-S cluster assembly protein NifU [Elusimicrobium minutum Pei191] gi|186971008|gb|ACC97993.1| Fe-S cluster assembly protein NifU [Elusimicrobium minutum Pei191] Length = 284 Score = 36.6 bits (83), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 A V+ ++ VL+ VRP + DGG + V + + GAC GC A T+K + + Sbjct: 211 AKVKAVEAVLEKDVRPKLNMDGGSVELVDIEGTNVKVKLLGACRGCMGAQGTIKMIIESA 270 Query: 176 L 176 L Sbjct: 271 L 271 >gi|149278153|ref|ZP_01884291.1| hypothetical protein PBAL39_11367 [Pedobacter sp. BAL39] gi|149230919|gb|EDM36300.1| hypothetical protein PBAL39_11367 [Pedobacter sp. BAL39] Length = 100 Score = 36.6 bits (83), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANI 175 + Q++++ L+ +RP + DGG++ + + +V L + G C C + T+K G+ Sbjct: 22 LTQQVEQALET-IRPYLIADGGNVEIEEITAENVVKLKLLGNCGSCKMSFMTMKAGIEQA 80 Query: 176 LNHFVPEVKDIRTV 189 + VP++ + V Sbjct: 81 ILKAVPQITSVVAV 94 >gi|46445797|ref|YP_007162.1| putative iron-sulfur cluster assembly protein nifU [Candidatus Protochlamydia amoebophila UWE25] gi|46399438|emb|CAF22887.1| putative iron-sulfur cluster assembly protein nifU [Candidatus Protochlamydia amoebophila UWE25] Length = 263 Score = 36.6 bits (83), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Query: 118 VQRIKEVLDNRVRPAVARD-GGDIVFKGYRDGIVFLSMRGACSGCPSAS-ETLKY 170 + I+EVLD VRP + D GG +V D + ++ +G+C+ C SA+ TL Y Sbjct: 184 INLIEEVLDRDVRPYIELDAGGVVVLDLVNDWELHIAYQGSCTSCFSATGTTLSY 238 >gi|89101041|ref|ZP_01173882.1| YpgR [Bacillus sp. NRRL B-14911] gi|89084243|gb|EAR63403.1| YpgR [Bacillus sp. NRRL B-14911] Length = 424 Score = 36.6 bits (83), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I + + + + ++ K + I I GI VY DF+ V + Sbjct: 55 EPTPSPNTMKIILDEELPMGKSNNYKKDKTDGAPKVVLDILQIEGIKGVYHVADFLAVER 114 Query: 66 D-QYDWEHLRPPV 77 + ++DW+ L P V Sbjct: 115 NAKFDWKELLPQV 127 >gi|297624836|ref|YP_003706270.1| nitrogen-fixing NifU domain-containing protein [Truepera radiovictrix DSM 17093] gi|297166016|gb|ADI15727.1| nitrogen-fixing NifU domain protein [Truepera radiovictrix DSM 17093] Length = 198 Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 38/73 (52%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 D V QR++EVLD + P VA GG + ++ + G C GC +A TL+ G+ Sbjct: 99 DDPVAQRVQEVLDRIINPGVASHGGHVSLAKVEGDAAYVLLGGGCQGCGAADITLRQGIE 158 Query: 174 NILNHFVPEVKDI 186 + VPE+K + Sbjct: 159 EAICSAVPEIKRV 171 >gi|73662618|ref|YP_301399.1| hypothetical protein SSP1309 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495133|dbj|BAE18454.1| hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 85 Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 10/86 (11%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIH----FSNAKEAEISPLASRIFSIPGIASVYFGY 58 ++ TPNP T+K V+ + G + F+ K+ + + I I GI S++ Sbjct: 4 LEVSQTPNPNTMKI----VLQLSGEDYKPNTFTAVKDNQ-PEFINDILQIEGIKSIFQAM 58 Query: 59 DFITVGKD-QYDWEHLRPPVLGMIME 83 +FI+V K Y+WE L P V + E Sbjct: 59 NFISVDKKADYEWETLLPEVTKTLKE 84 >gi|237741635|ref|ZP_04572116.1| predicted protein [Fusobacterium sp. 4_1_13] gi|294785755|ref|ZP_06751043.1| nitrogen fixation protein NifU [Fusobacterium sp. 3_1_27] gi|229429283|gb|EEO39495.1| predicted protein [Fusobacterium sp. 4_1_13] gi|294487469|gb|EFG34831.1| nitrogen fixation protein NifU [Fusobacterium sp. 3_1_27] Length = 105 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +I++ LD +RP + GGDI Y + L ++G C CP + ET + + + Sbjct: 7 KIEKFLDKEIRPYLKSHGGDIEIINYSIEKQELNLRLKGQCCVCPHSIETNENFIKKSIV 66 Query: 178 HFVPEVKDI 186 E+K+I Sbjct: 67 EKFSEIKNI 75 >gi|109900531|ref|YP_663786.1| putative DNA uptake protein [Pseudoalteromonas atlantica T6c] gi|119370611|sp|Q15N06|NFUA_PSEA6 RecName: Full=Fe/S biogenesis protein nfuA gi|109702812|gb|ABG42732.1| HesB/YadR/YfhF [Pseudoalteromonas atlantica T6c] Length = 192 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLK 169 ++ D+ + +RI +++ + P +A GG ++ + G L G C+GC TLK Sbjct: 101 VDDDAPLEERINYMIEAEINPQLASHGGKVMLMEITEKGEAILQFGGGCNGCSMVDVTLK 160 Query: 170 YGV-ANILNHFVPEVKDIR 187 G+ +L F E+ ++ Sbjct: 161 DGIEKQMLAQFSGELTAVK 179 >gi|34763076|ref|ZP_00144048.1| NifU-like protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887244|gb|EAA24343.1| NifU-like protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 105 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + +I++ LD +RP + GGDI Y + L ++G C CP + ET + + Sbjct: 5 MDKIEKFLDKEIRPYLKSHGGDIEIINYSIEKKELNLRLKGQCCVCPHSIETNENFIKKS 64 Query: 176 LNHFVPEVKDI 186 + E+K+I Sbjct: 65 IVEKFSEIKNI 75 >gi|206576904|ref|YP_002237557.1| Fe-S cluster assembly protein NifU [Klebsiella pneumoniae 342] gi|288934473|ref|YP_003438532.1| Fe-S cluster assembly protein NifU [Klebsiella variicola At-22] gi|290508675|ref|ZP_06548046.1| Fe-S cluster assembly protein NifU [Klebsiella sp. 1_1_55] gi|206565962|gb|ACI07738.1| Fe-S cluster assembly protein NifU [Klebsiella pneumoniae 342] gi|255761126|gb|ACU32726.1| Fe-S cluster assembly protein NifU [Klebsiella variicola At-22] gi|289778069|gb|EFD86066.1| Fe-S cluster assembly protein NifU [Klebsiella sp. 1_1_55] Length = 279 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 23/44 (52%) Query: 127 NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 N +RP + DGGD+ V +S+ G+CSGC TL + Sbjct: 213 NELRPHIQADGGDMTLLNVTPRQVTVSLSGSCSGCMMTDMTLAW 256 >gi|126653245|ref|ZP_01725363.1| hypothetical protein BB14905_04073 [Bacillus sp. B14905] gi|126589996|gb|EAZ84124.1| hypothetical protein BB14905_04073 [Bacillus sp. B14905] Length = 375 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E TP+P ++K + + + +F+ + E + A+ I +I GI VY DF Sbjct: 4 ITIEPTPSPNSMKIVVDTELPFGKSYNFTKDNKDEATGEAAAILAIEGIKGVYHVADFFA 63 Query: 63 VGKD-QYDWEHLRPPVLGMIMEHFISGDPII 92 V ++ +Y WE + + ++ E + D I Sbjct: 64 VERNAKYAWEGILASIRQVLGEDVETQDETI 94 >gi|162146272|ref|YP_001600731.1| nitrogen fixation protein nifU [Gluconacetobacter diazotrophicus PAl 5] gi|209543724|ref|YP_002275953.1| Fe-S cluster assembly protein NifU [Gluconacetobacter diazotrophicus PAl 5] gi|11034776|gb|AAG27073.1|AF105225_9 NifU [Gluconacetobacter diazotrophicus PAl 5] gi|161784847|emb|CAP54390.1| Nitrogen fixation protein nifU [Gluconacetobacter diazotrophicus PAl 5] gi|209531401|gb|ACI51338.1| Fe-S cluster assembly protein NifU [Gluconacetobacter diazotrophicus PAl 5] Length = 309 Score = 36.2 bits (82), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 ++ I+EVL+ +RPA+ DGGD D V + + GAC C A+ T++ Sbjct: 236 IRAIEEVLEE-LRPALRNDGGDCELVDVEDNRVMVRLTGACVNCQLAAVTVQ 286 >gi|219681889|ref|YP_002468275.1| iron-sulfur cluster scaffold protein (YhgI) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471594|ref|ZP_05635593.1| iron-sulfur cluster scaffold protein (YhgI) [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|254767292|sp|B8D9W6|NFUA_BUCA5 RecName: Full=Fe/S biogenesis protein nfuA gi|219624732|gb|ACL30887.1| iron-sulfur cluster scaffold protein (YhgI) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 192 Score = 36.2 bits (82), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 S++ +++K L+ + P ++ GG + + K +GI + G C+GC TLK V Sbjct: 106 SSLEEKVKCFLNLEINPQLSMHGGRVELMKIDENGIAAIQFSGGCNGCSMIGSTLKETVE 165 Query: 174 NILNHFVPEVKDI 186 L E+K + Sbjct: 166 KKLLSSFSEIKKV 178 >gi|152992899|ref|YP_001358620.1| hypothetical protein SUN_1310 [Sulfurovum sp. NBC37-1] gi|151424760|dbj|BAF72263.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 116 Score = 36.2 bits (82), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +D + Q +K L + V V GG I G ++G V++ + G C GC + T K V Sbjct: 4 NDQDIYQAVKHHLPS-VNEYVESHGGAIKLLGVKNGTVYIELTGTCHGCSMSLMTTKMVV 62 Query: 173 ANILNHFV-PEV 183 L + PE+ Sbjct: 63 QKKLRELIHPEL 74 >gi|288918993|ref|ZP_06413335.1| iron-sulfur cluster assembly accessory protein [Frankia sp. EUN1f] gi|288349639|gb|EFC83874.1| iron-sulfur cluster assembly accessory protein [Frankia sp. EUN1f] Length = 206 Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 8/85 (9%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDI----VFKGYRD---GIVFLSMRGACSGCPSA 164 E+D+ + ++++V+ +RP + DGGD+ V G V + + GAC+GC SA Sbjct: 122 EADAKLRAQVEDVM-AEIRPFLQGDGGDVQVVTVLAGNGQPGTAEVHIRLVGACNGCSSA 180 Query: 165 SETLKYGVANILNHFVPEVKDIRTV 189 S T+ + + +PE+ + V Sbjct: 181 SATVTAVIEKRIKESLPEIGRVALV 205 >gi|15895944|ref|NP_349293.1| maltodextrin glucosidase [Clostridium acetobutylicum ATCC 824] gi|15025718|gb|AAK80633.1|AE007766_6 Possible maltodextrin glucosidase [Clostridium acetobutylicum ATCC 824] gi|325510096|gb|ADZ21732.1| putative maltodextrin glucosidase [Clostridium acetobutylicum EA 2018] Length = 451 Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%) Query: 36 AEISPLASRIFSIPGIASVYFGYDF-ITVGKDQYDWEHLRP 75 A I P+ + +F+IPGI S+Y+G DF IT K ++LRP Sbjct: 295 ANIYPIYTILFTIPGIPSIYYGSDFGITGVKQNNSDKYLRP 335 >gi|159898290|ref|YP_001544537.1| non-specific serine/threonine protein kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159891329|gb|ABX04409.1| Non-specific serine/threonine protein kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 1055 Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 23/114 (20%) Query: 13 TLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITV----GKDQY 68 TL+F P Q+ L++G +H ++ + + +I GIA F V K Y Sbjct: 545 TLRFAPTQITLLDGLLHNTDQVDPTFKQRLQGLKTINGIAPQPLPSGFAGVLRSYQKAGY 604 Query: 69 DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIK 122 DW H ++ G G DDMG+G I++ A +Q +K Sbjct: 605 DWLHF------------------LYKYGFGGCLADDMGTGKTIQT-LAFLQSLK 639 >gi|146277303|ref|YP_001167462.1| NifU domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145555544|gb|ABP70157.1| nitrogen-fixing NifU domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 241 Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 I EV++ VRP + DGGD+ V + + GACSGC A+ TL Sbjct: 163 IAEVIET-VRPRLRADGGDVTLLAVDGSKVRVHLTGACSGCQLAALTL 209 >gi|312114730|ref|YP_004012326.1| nitrogen-fixing NifU domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311219859|gb|ADP71227.1| nitrogen-fixing NifU domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 98 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 I+E ++ +RP + RDGGD V + M GAC GC AS T+ A I+ Sbjct: 28 IRETIEE-LRPHLKRDGGDCELLEVEGNFVKVRMTGACVGCQLASVTVHGIQAKIIAKL 85 >gi|256844964|ref|ZP_05550422.1| predicted protein [Fusobacterium sp. 3_1_36A2] gi|256718523|gb|EEU32078.1| predicted protein [Fusobacterium sp. 3_1_36A2] Length = 101 Score = 35.8 bits (81), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +I++ LD +RP + GG+I Y + L ++G C CP + ET + + + Sbjct: 3 KIEKFLDREIRPYLKSHGGNIEIINYSIERQELNLRLKGQCCVCPHSMETNENFIKKSIL 62 Query: 178 HFVPEVKDI 186 P++K+I Sbjct: 63 EKFPKIKNI 71 >gi|256823357|ref|YP_003147320.1| IscR-regulated protein YhgI [Kangiella koreensis DSM 16069] gi|256796896|gb|ACV27552.1| IscR-regulated protein YhgI [Kangiella koreensis DSM 16069] Length = 192 Score = 35.8 bits (81), Expect = 2.6, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 1/80 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLK 169 ++ D+ RI+ L++ + P +A GG + + + GI L G C GC TLK Sbjct: 102 VDDDAPATDRIRYYLESEINPELANHGGQVSLVEFTQSGIAVLQFGGGCQGCGMVDVTLK 161 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ L VPEVK ++ V Sbjct: 162 EGIEKTLIERVPEVKGVKDV 181 >gi|205374729|ref|ZP_03227523.1| NifU-like protein [Bacillus coahuilensis m4-4] Length = 48 Score = 35.8 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 15/30 (50%), Positives = 20/30 (66%) Query: 147 DGIVFLSMRGACSGCPSASETLKYGVANIL 176 DG+V L + GAC CPS++ TLK G+ L Sbjct: 5 DGVVKLRLLGACGSCPSSTITLKAGIERAL 34 >gi|120434575|ref|YP_860268.1| NifU-like/thioredoxin-like protein [Gramella forsetii KT0803] gi|117576725|emb|CAL65194.1| protein containing NifU-like domain / thioredoxin-like protein [Gramella forsetii KT0803] Length = 54 Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 13/23 (56%), Positives = 19/23 (82%) Query: 154 MRGACSGCPSASETLKYGVANIL 176 ++GACSGCPS++ TLK G+ +L Sbjct: 16 LQGACSGCPSSTMTLKSGIETML 38 >gi|319955766|ref|YP_004167029.1| bfd domain protein (2fe-2S)-binding domain protein [Nitratifractor salsuginis DSM 16511] gi|319418170|gb|ADV45280.1| BFD domain protein (2Fe-2S)-binding domain protein [Nitratifractor salsuginis DSM 16511] Length = 320 Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDG----IVFLSMRGACSGCPSASETLKYGVANIL 176 I V+D +R + DGGD+ ++ +++ GACSGC SAS + + IL Sbjct: 248 INAVIDEHIRAMLVMDGGDMEILDVKENGEHTDLYIRYLGACSGCASASTGTLFAIEGIL 307 Query: 177 NH 178 Sbjct: 308 KQ 309 >gi|257470226|ref|ZP_05634317.1| hypothetical protein FulcA4_12862 [Fusobacterium ulcerans ATCC 49185] gi|317064440|ref|ZP_07928925.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313690116|gb|EFS26951.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 92 Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 2/67 (2%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +I++ LD +RP + + GDI + Y ++ + L + G C CP + +T + + + Sbjct: 3 KIEKFLDEEIRPELRKHNGDISVEEYDEKNRKLVLRLMGQCCTCPHSIDTSENFIKISVR 62 Query: 178 HFVPEVK 184 PE++ Sbjct: 63 EKFPEIE 69 >gi|317053470|ref|YP_004119237.1| Fe-S cluster assembly protein NifU [Pantoea sp. At-9b] gi|255761147|gb|ACU32746.1| Fe-S cluster assembly protein [Pantoea sp. At-9b] gi|316953209|gb|ADU72681.1| Fe-S cluster assembly protein NifU [Pantoea sp. At-9b] Length = 274 Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 Q + E + +RP + DGGD+ + V +S+ G+CSGC TL + Sbjct: 206 QDVMETI-TELRPHIQADGGDMSLVNVANHTVTVSLTGSCSGCMMTDMTLAW 256 >gi|297616852|ref|YP_003702011.1| nitrogen-fixing NifU domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297144689|gb|ADI01446.1| nitrogen-fixing NifU domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 102 Score = 35.4 bits (80), Expect = 3.3, Method: Compositional matrix adjust. Identities = 16/68 (23%), Positives = 34/68 (50%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + + ++L +V P + GD+ F D V + ++GAC C +A T++ + + Sbjct: 3 ETLVKLLAEKVTPYLQMHAGDVEFVDVVDNCVSIRLKGACQDCSAAQITVETVIKEAIVS 62 Query: 179 FVPEVKDI 186 PE++ + Sbjct: 63 RFPEIEKV 70 >gi|288556161|ref|YP_003428096.1| hypothetical protein BpOF4_15775 [Bacillus pseudofirmus OF4] gi|288547321|gb|ADC51204.1| hypothetical protein BpOF4_15775 [Bacillus pseudofirmus OF4] Length = 378 Score = 35.4 bits (80), Expect = 3.6, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 3/78 (3%) Query: 2 FIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAK-EAEISPLASRIFSIPGIASVYFGYDF 60 + E TP+P T+K + L +G+ + N K + E +F+I G+ SVY DF Sbjct: 3 ILSIEPTPSPNTMKLTLSES-LGQGSRNSYNEKNKGEAPEYIQELFNIEGVKSVYHVADF 61 Query: 61 ITVGKD-QYDWEHLRPPV 77 + + + + DW+ + P V Sbjct: 62 LAIDRHPKVDWKVILPKV 79 >gi|128319|sp|P05343|NIFU_KLEPN RecName: Full=Nitrogen fixation protein nifU gi|43830|emb|CAA31674.1| unnamed protein product [Klebsiella pneumoniae] gi|43879|emb|CAA31117.1| nifU gene product (AA 1 - 274) [Klebsiella pneumoniae] Length = 274 Score = 35.4 bits (80), Expect = 3.6, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 23/43 (53%) Query: 128 RVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 +RP + DGGD+ + V +S+ G+CSGC TL + Sbjct: 214 ELRPHIQADGGDMALLSVTNHQVTVSLSGSCSGCMMTDMTLAW 256 >gi|227496737|ref|ZP_03927011.1| NifU domain protein [Actinomyces urogenitalis DSM 15434] gi|226833752|gb|EEH66135.1| NifU domain protein [Actinomyces urogenitalis DSM 15434] Length = 177 Score = 35.4 bits (80), Expect = 3.6, Method: Compositional matrix adjust. Identities = 17/66 (25%), Positives = 31/66 (46%) Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP 181 +E+ + V GG + DG+V +++ GAC CP+A T+ ++L P Sbjct: 109 REIAEGPVGQIARAHGGSFTVQRVADGVVKVALEGACQDCPAAVVTMHARFEHLLRRRCP 168 Query: 182 EVKDIR 187 + +R Sbjct: 169 WLVSVR 174 >gi|86748105|ref|YP_484601.1| nitrogen-fixing NifU-like protein [Rhodopseudomonas palustris HaA2] gi|86571133|gb|ABD05690.1| Nitrogen-fixing NifU-like protein [Rhodopseudomonas palustris HaA2] Length = 333 Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 + E L++ +RP + RDGGD +V++ + G C GC +S TL Sbjct: 266 VAEALED-LRPHLQRDGGDCELVSVEGNVVYVRLSGNCVGCQLSSVTL 312 >gi|149343|gb|AAA25155.1| nifU encoded protein [Klebsiella pneumoniae] Length = 274 Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 23/43 (53%) Query: 128 RVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 +RP + DGGD+ + V +S+ G+CSGC TL + Sbjct: 214 ELRPHIQADGGDMALLSVTNHQVTVSLSGSCSGCMMTDMTLAW 256 >gi|56963807|ref|YP_175538.1| hypothetical protein ABC2042 [Bacillus clausii KSM-K16] gi|56910050|dbj|BAD64577.1| conserved hypothetical protein [Bacillus clausii KSM-K16] Length = 372 Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 15/85 (17%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGA----IHFSNAKEAEISPLASRIFSIPGIASVY 55 M+I++ E TP+P T+K + L E A + +AE ++F I GI VY Sbjct: 1 MYIRSIEPTPSPNTMK-----INLSEAAAGTSTTYQEKNKAEAPTFIQQLFDIEGIKQVY 55 Query: 56 FGYDFITVGKDQY---DWEHLRPPV 77 DF+ V D+Y DW+ + P + Sbjct: 56 HVGDFLAV--DRYPKADWKAILPQI 78 >gi|50121870|ref|YP_051037.1| nitrogen fixation protein [Pectobacterium atrosepticum SCRI1043] gi|49612396|emb|CAG75846.1| nitrogen fixation protein [Pectobacterium atrosepticum SCRI1043] Length = 279 Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 22/43 (51%) Query: 128 RVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 +RP + DGGD+ D V +S+ G+C GC TL + Sbjct: 216 ELRPYIQADGGDMALLNVSDHQVTVSLSGSCQGCMMTDMTLAW 258 >gi|313683642|ref|YP_004061380.1| nitrogen-fixing nifu domain protein [Sulfuricurvum kujiense DSM 16994] gi|313156502|gb|ADR35180.1| nitrogen-fixing NifU domain protein [Sulfuricurvum kujiense DSM 16994] Length = 324 Score = 35.0 bits (79), Expect = 4.3, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 10/87 (11%) Query: 104 DMGS-GDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDG----IVFLSMR 155 D GS GDF +VQ+IK V+D +R + DGG++ +D V++ Sbjct: 233 DAGSHGDF--EAMTLVQKIKAIDSVIDESIRQFLIMDGGNMEVIDIKDSPDYIDVYIRYL 290 Query: 156 GACSGCPSASETLKYGVANILNHFVPE 182 GAC+GC S+S Y + L + + Sbjct: 291 GACNGCASSSTGTLYAIEATLKEKLSQ 317 >gi|288818611|ref|YP_003432959.1| nitrogen-fixing NifU domain protein [Hydrogenobacter thermophilus TK-6] gi|288788011|dbj|BAI69758.1| nitrogen-fixing NifU domain protein [Hydrogenobacter thermophilus TK-6] gi|308752202|gb|ADO45685.1| nitrogen-fixing NifU domain protein [Hydrogenobacter thermophilus TK-6] Length = 83 Score = 35.0 bits (79), Expect = 4.4, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Query: 122 KEVLD--NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 +EV D ++RPA+ GD+ ++G V+L G C+ CP +LK Sbjct: 7 REVEDILKKMRPALKDHHGDLKVVEIKEGNVYLQFEGGCTECPIVDASLK 56 >gi|170741742|ref|YP_001770397.1| Fe-S cluster assembly protein NifU [Methylobacterium sp. 4-46] gi|168196016|gb|ACA17963.1| Fe-S cluster assembly protein NifU [Methylobacterium sp. 4-46] Length = 329 Score = 35.0 bits (79), Expect = 4.4, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%) Query: 118 VQRIKEVLDNRV---RPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 +QRI+ ++D + RP + RDGGD +V + + GAC GC AS T+ Sbjct: 256 MQRIR-LIDKAIEALRPVLQRDGGDCELVEVEGTVVSVRLSGACVGCQMASVTV 308 >gi|291546160|emb|CBL19268.1| Glycosidases [Ruminococcus sp. SR1/5] Length = 583 Score = 35.0 bits (79), Expect = 4.5, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 29/50 (58%) Query: 28 IHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKDQYDWEHLRPPV 77 IH +A +P+ ++++PG+ S+Y+G +F GK ++ LRP + Sbjct: 282 IHTKLQNKAHFAPVHVLLYTLPGVPSIYYGSEFGIDGKRKFSDASLRPAL 331 >gi|114321604|ref|YP_743287.1| HesB/YadR/YfhF-family protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227998|gb|ABI57797.1| HesB/YadR/YfhF-family protein [Alkalilimnicola ehrlichii MLHE-1] Length = 211 Score = 35.0 bits (79), Expect = 4.5, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 1/97 (1%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVA-RDGGDIVFKGYRDGIVFL 152 GG MK + ++ ++ +RI VL+ + P +A DG V + G + Sbjct: 89 RGGRLTMKAPNAARLPEPDAMQSLEERITHVLETEINPDLAAHDGSVTVERVDEQGRALI 148 Query: 153 SMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 G C GC +TL V L VP + IR V Sbjct: 149 RFAGGCQGCAVVDQTLTGLVEKTLLARVPALTGIRDV 185 >gi|284929173|ref|YP_003421695.1| Fe-S cluster assembly protein NifU [cyanobacterium UCYN-A] gi|213578831|gb|ACJ53725.1| Fe-S cluster assembly protein NifU [cyanobacterium UCYN-A] Length = 294 Score = 35.0 bits (79), Expect = 4.7, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 35/52 (67%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 I++VL+ V+PA+A+DGGD+ ++ + ++GACS C S++ TLK + Sbjct: 226 IQQVLEEEVKPALAKDGGDVELFDIEGNLIKVVLKGACSSCSSSTFTLKTAI 277 >gi|71278620|ref|YP_266987.1| putative DNA uptake protein [Colwellia psychrerythraea 34H] gi|119370607|sp|Q48AC6|NFUA_COLP3 RecName: Full=Fe/S biogenesis protein nfuA gi|71144360|gb|AAZ24833.1| HesB-like domain/NifU-like domain protein [Colwellia psychrerythraea 34H] Length = 192 Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVF-KGYRDGIVFLSMRGACSGCPSASETLK 169 + D+ + +R+ L V P +A GG+ + DG L G C+GC T+K Sbjct: 101 VADDAPLFERVHYFLQAEVNPQLAGHGGECTLVEITDDGYAVLQFGGGCNGCAQIDVTVK 160 Query: 170 YGVANILNHFVP-EVKDIR 187 G+ L + E+K ++ Sbjct: 161 DGIEKQLIELMAGEIKGVK 179 >gi|289548747|ref|YP_003473735.1| nitrogen-fixing NifU domain protein [Thermocrinis albus DSM 14484] gi|289182364|gb|ADC89608.1| nitrogen-fixing NifU domain protein [Thermocrinis albus DSM 14484] Length = 83 Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust. Identities = 13/47 (27%), Positives = 25/47 (53%) Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 E + ++RPA+ G++ R+G ++L G C+ CP ++K Sbjct: 10 EAVLEKIRPALKEHHGNLKVVDIREGEIYLQFEGGCTDCPIVDASVK 56 >gi|323143850|ref|ZP_08078516.1| putative IscR-regulated protein YhgI [Succinatimonas hippei YIT 12066] gi|322416368|gb|EFY07036.1| putative IscR-regulated protein YhgI [Succinatimonas hippei YIT 12066] Length = 196 Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLKYGV 172 D+ + R+K + V PA+A GG + DG+V + G C+GC TLK G+ Sbjct: 108 DATLFDRVKRFFETTVNPALAGHGGAAALEEVTEDGVVKVRFSGGCNGCSMVGITLKEGI 167 Query: 173 ANILNHFVP-EVKDI 186 + LN P +KD+ Sbjct: 168 QSQLNQAFPGMIKDV 182 >gi|111221823|ref|YP_712617.1| hypothetical protein FRAAL2394 [Frankia alni ACN14a] gi|111149355|emb|CAJ61043.1| hypothetical protein FRAAL2394 [Frankia alni ACN14a] Length = 180 Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +R+ ++ R+RPAV GG+I G G+ +S+ GC SA+ + V + Sbjct: 80 RRVARAIE-RLRPAVRDRGGEIELVGIERGVAEISL--TLGGCGSAAGEVLAAVREAVLA 136 Query: 179 FVPEVKDIR 187 PE+ D+R Sbjct: 137 VAPELSDVR 145 >gi|158318602|ref|YP_001511110.1| iron-sulfur cluster assembly accessory protein [Frankia sp. EAN1pec] gi|158114007|gb|ABW16204.1| iron-sulfur cluster assembly accessory protein [Frankia sp. EAN1pec] Length = 206 Score = 34.7 bits (78), Expect = 5.7, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 8/85 (9%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDI----VFKGYRD---GIVFLSMRGACSGCPSA 164 E+D + ++++V+ +RP + DGGD+ V G + V + + GAC+GC SA Sbjct: 122 EADDRLRGQVEDVI-AEIRPFLQGDGGDVQLVTVLAGNGEPGTAEVHIRLVGACNGCSSA 180 Query: 165 SETLKYGVANILNHFVPEVKDIRTV 189 S T+ + + +PE+ + V Sbjct: 181 SATVTAVIEKRIKESLPEIGRVALV 205 >gi|297520132|ref|ZP_06938518.1| putative DNA uptake protein [Escherichia coli OP50] Length = 70 Score = 34.7 bits (78), Expect = 5.9, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 146 RDGIVFLSMRGACSGCPSASETLKYGV-ANILNHFVPEVKDIR 187 DG L G C+GC TLK G+ +LN F PE+K +R Sbjct: 16 EDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEF-PELKGVR 57 >gi|52786069|ref|YP_091898.1| YpgR [Bacillus licheniformis ATCC 14580] gi|163119502|ref|YP_079487.2| rhodopsin-like GPCR superfamily protein [Bacillus licheniformis ATCC 14580] gi|319645345|ref|ZP_07999578.1| YpgR protein [Bacillus sp. BT1B_CT2] gi|52348571|gb|AAU41205.1| YpgR [Bacillus licheniformis ATCC 14580] gi|145903009|gb|AAU23849.2| Rhodopsin-like GPCR superfamily protein [Bacillus licheniformis ATCC 14580] gi|317393154|gb|EFV73948.1| YpgR protein [Bacillus sp. BT1B_CT2] Length = 378 Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust. Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TP+P T+K I + + + ++ P+ + +I G+ VY DFI V + Sbjct: 7 EPTPSPNTMKVILTEELPGGKSNNYKKDHAEGAPPVIQEVLNIDGVKGVYHVADFIAVER 66 Query: 66 D-QYDWEHLRPPV 77 + ++DW+ + P V Sbjct: 67 NARFDWKDILPKV 79 >gi|298373186|ref|ZP_06983176.1| Fe-S cluster assembly protein NifU [Bacteroidetes oral taxon 274 str. F0058] gi|298276090|gb|EFI17641.1| Fe-S cluster assembly protein NifU [Bacteroidetes oral taxon 274 str. F0058] Length = 93 Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 28/59 (47%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++ ++ VRP + GGDI V + + GACS CPS T++ + + L Sbjct: 6 KVNHIVAETVRPILRSHGGDIEVVEVEGKNVKVRLLGACSSCPSMQNTMEEIIESTLRQ 64 >gi|162449342|ref|YP_001611709.1| NifU domain-containing protein [Sorangium cellulosum 'So ce 56'] gi|161159924|emb|CAN91229.1| nifU domain protein [Sorangium cellulosum 'So ce 56'] Length = 87 Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust. Identities = 20/73 (27%), Positives = 33/73 (45%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 A + ++ +V + P V DGG++ + L + GACSGCP A T + + Sbjct: 3 ASIDQLLKVCREVIAPLVRADGGELYIVAVEPDHLTLHLAGACSGCPGAMLTARAVIEPA 62 Query: 176 LNHFVPEVKDIRT 188 + P + I T Sbjct: 63 VLAVAPSARVIVT 75 >gi|85859113|ref|YP_461315.1| poly A polymerase [Syntrophus aciditrophicus SB] gi|85722204|gb|ABC77147.1| poly A polymerase [Syntrophus aciditrophicus SB] Length = 495 Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 5/90 (5%) Query: 101 KLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGAC-- 158 +LD +GS ++S +Q+ +E+ D ++RP G D++ GY G +F + A Sbjct: 404 RLDCLGSNGVLDSYEYCLQKQRELTDEQLRPPPLLRGKDLLEMGYLPGALFREILNAVED 463 Query: 159 ---SGCPSASETLKYGVANILNHFVPEVKD 185 +G + E + V N H ++ D Sbjct: 464 AQLNGSIATPEEARQLVKNRWPHRRIQISD 493 >gi|119475888|ref|ZP_01616240.1| hypothetical protein GP2143_04845 [marine gamma proteobacterium HTCC2143] gi|119450515|gb|EAW31749.1| hypothetical protein GP2143_04845 [marine gamma proteobacterium HTCC2143] Length = 203 Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 + +DS + RI VL N V P++A GG++ + + + + L G C GC TLK Sbjct: 112 VNADSPLEDRINYVLYNEVNPSLASHGGEVSLLEVTEEKVAILQFGGGCQGCGMVEATLK 171 Query: 170 YGVANILNHFVPEVKDIR 187 GV L +PE+ +R Sbjct: 172 DGVEKSLMEQIPELTAVR 189 >gi|4325122|gb|AAD17270.1| NifV [Frankia sp. EuIK1] Length = 206 Score = 34.3 bits (77), Expect = 7.6, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 8/85 (9%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-------VFLSMRGACSGCPSA 164 E+D + ++++V+ +RP + DGGD+ G V + + GAC+GC SA Sbjct: 122 EADERLRGQVEDVIA-EIRPFLQGDGGDVQLVTVLAGNGQPGTAEVHIRLVGACNGCSSA 180 Query: 165 SETLKYGVANILNHFVPEVKDIRTV 189 S T+ + + +PE+ + V Sbjct: 181 SATVTAVIEKRIKESLPEIGRVALV 205 >gi|159905099|ref|YP_001548761.1| hypothetical protein MmarC6_0712 [Methanococcus maripaludis C6] gi|159886592|gb|ABX01529.1| conserved hypothetical protein [Methanococcus maripaludis C6] Length = 586 Score = 34.3 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 3/75 (4%) Query: 58 YDFITVGKDQYDWEHLRPPV--LGMIMEHFISGD-PIIHNGGLGDMKLDDMGSGDFIESD 114 Y+ I + KDQ E + V +EH + P N L DM+L+ + SGDF E++ Sbjct: 22 YNTIDLQKDQIITETIATAVDLKSSSLEHVVETSIPTAFNKVLNDMELEVIQSGDFYENE 81 Query: 115 SAVVQRIKEVLDNRV 129 S V+ ++ LD+ + Sbjct: 82 SEVITDLENRLDSEM 96 >gi|254510059|ref|ZP_05122126.1| metallo-beta-lactamase family protein [Rhodobacteraceae bacterium KLH11] gi|221533770|gb|EEE36758.1| metallo-beta-lactamase family protein [Rhodobacteraceae bacterium KLH11] Length = 287 Score = 34.3 bits (77), Expect = 8.1, Method: Compositional matrix adjust. Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 10/72 (13%) Query: 10 NPATLKFIPGQVVLVEGAI----------HFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 PA L ++ G V + F A++ +I S+P ++ G+D Sbjct: 146 TPACLTYVIGDAAFVGDTLFMPDFGTARCDFPGGSSADLYASIQKILSLPDETRIFVGHD 205 Query: 60 FITVGKDQYDWE 71 + G+D+Y WE Sbjct: 206 YKAPGRDEYAWE 217 >gi|332796697|ref|YP_004458197.1| group 1 glycosyl transferase [Acidianus hospitalis W1] gi|332694432|gb|AEE93899.1| glycosyl transferase group 1 [Acidianus hospitalis W1] Length = 352 Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Query: 74 RPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESD-SAVVQRIKEVLDNRVRPA 132 R P LG+I E G P+I N GLG +L G F+ D + RI E L+N + + Sbjct: 265 RGPGLGVI-EAMAYGVPVIVNEGLGSKELIKQGENGFVVRDWEEAIDRINETLENWHKMS 323 Query: 133 V 133 V Sbjct: 324 V 324 >gi|296171394|ref|ZP_06852727.1| NifU domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894169|gb|EFG73928.1| NifU domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 187 Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 23/47 (48%) Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 E+L V A GG I V + M GAC GCP+AS TL+ Sbjct: 103 ELLAGPVGALAASHGGSIELVSVAGHTVTVRMMGACDGCPAASSTLR 149 >gi|119963151|ref|YP_946666.1| NifU-like domain-containing protein [Arthrobacter aurescens TC1] gi|119950010|gb|ABM08921.1| putative NifU-like domain protein [Arthrobacter aurescens TC1] Length = 134 Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 ++E L + +RP + GD+ DG+V + AC CP+ S T V + L V Sbjct: 14 LQEAL-SYIRPLLKGHSGDLTIAAVDDGVVTVDFHNACHSCPAISVTFAGLVRSRLMQ-V 71 Query: 181 PEVKDIRT 188 VKD+R+ Sbjct: 72 DGVKDVRS 79 >gi|292493232|ref|YP_003528671.1| exosortase 1 system-associated amidotransferase 1 [Nitrosococcus halophilus Nc4] gi|291581827|gb|ADE16284.1| exosortase 1 system-associated amidotransferase 1 [Nitrosococcus halophilus Nc4] Length = 655 Score = 33.9 bits (76), Expect = 9.7, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 96 GLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR 146 GL D +L D+ + +S + R+ E+ RV+ A++ DGGD +F GYR Sbjct: 326 GLVD-RLADVYDEPYADSSAMPTYRVCELARQRVKVALSGDGGDELFAGYR 375 Searching..................................................done Results from round 2 >gi|126730479|ref|ZP_01746290.1| nifU domain protein [Sagittula stellata E-37] gi|126709212|gb|EBA08267.1| nifU domain protein [Sagittula stellata E-37] Length = 187 Score = 290 bits (742), Expect = 8e-77, Method: Composition-based stats. Identities = 99/190 (52%), Positives = 134/190 (70%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A A SPLA R+F++ G+ ++FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLDMGTADFPSADAAGASPLAQRLFAVDGVTGIFFGNDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D DW+H++P +LG IMEHF SG P++ +G G + D +V Sbjct: 61 VTVTKADTVDWDHMKPAILGAIMEHFQSGQPVMSDGA-----AQAGGHAEHEGEDGEIVG 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDSRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|99078069|ref|YP_611327.1| nitrogen-fixing NifU-like [Ruegeria sp. TM1040] gi|99035207|gb|ABF62065.1| nitrogen-fixing NifU-like protein [Ruegeria sp. TM1040] Length = 187 Score = 289 bits (741), Expect = 1e-76, Method: Composition-based stats. Identities = 100/190 (52%), Positives = 136/190 (71%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A SPLA RIF++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLDAGTADFPSAEAASKSPLAQRIFAVSGVTGVFFGNDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV KD +W+H++P VLG +MEH+ SG P+I+ G + G + D +V Sbjct: 61 VTVTKDDSVEWDHIKPAVLGAVMEHYQSGQPVINEG-----QQQASGHAEHTGEDGEIVN 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDSRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|85705721|ref|ZP_01036818.1| nifU domain protein [Roseovarius sp. 217] gi|85669711|gb|EAQ24575.1| nifU domain protein [Roseovarius sp. 217] Length = 187 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 102/190 (53%), Positives = 136/190 (71%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F A+ AE SPLA RIF +PG++ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLDAGTADFPTAEGAEKSPLAERIFRVPGVSGVFFGNDF 60 Query: 61 ITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + +W+H++P +LG IMEH+ SG P++ G G G + DS +V Sbjct: 61 VTVTKGEATEWDHIKPAILGAIMEHYQSGQPVMLGEGGG-----ASGHAEHSGEDSEIVN 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDTRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTITLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|254465238|ref|ZP_05078649.1| NifU domain protein [Rhodobacterales bacterium Y4I] gi|206686146|gb|EDZ46628.1| NifU domain protein [Rhodobacterales bacterium Y4I] Length = 188 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 99/190 (52%), Positives = 136/190 (71%), Gaps = 5/190 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A A SPLASRIF++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEAGTADFPSADAAGKSPLASRIFAVDGVTGVFFGNDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + DW+H++P +LG +MEH+ SG P++ +G G + D+ +V Sbjct: 61 VTVTKAEGIDWDHIKPAILGAVMEHYQSGQPVMADGSAD----PASGHAEHSGEDAEIVN 116 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 117 QIKELLDSRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 176 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 177 IPEVTEVRPV 186 >gi|86138949|ref|ZP_01057520.1| nifU domain protein [Roseobacter sp. MED193] gi|85824180|gb|EAQ44384.1| nifU domain protein [Roseobacter sp. MED193] Length = 187 Score = 289 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 101/190 (53%), Positives = 139/190 (73%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A SPLA+RIF++ G+A V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLDAGTADFPSAETAGSSPLATRIFAVSGVAGVFFGNDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+H++P +LG IMEH+ SG PI++ GG G + +S +V Sbjct: 61 VTVTKSDSVEWDHIKPAILGAIMEHYQSGQPIVNAGG-----EQSSGHAEHSGENSEIVD 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IK++LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKDLLDSRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|83949998|ref|ZP_00958731.1| nifU domain protein [Roseovarius nubinhibens ISM] gi|83837897|gb|EAP77193.1| nifU domain protein [Roseovarius nubinhibens ISM] Length = 188 Score = 289 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 101/190 (53%), Positives = 135/190 (71%), Gaps = 5/190 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A SPLA RIF I G+ V+FG+DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLDAGTADFPSAEAAGKSPLAERIFKIAGVTGVFFGHDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV KD+ +W+H++P +LG IMEHF SG P++ + G G + D +V Sbjct: 61 VTVTKDEGTEWDHVKPAILGAIMEHFQSGKPVMLDAGGDPQS----GHAEHTGEDGEIVN 116 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 117 QIKELLDTRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTITLKMGIENLLRHY 176 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 177 IPEVTEVRPV 186 >gi|254780430|ref|YP_003064843.1| nitrogen fixation protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040107|gb|ACT56903.1| nitrogen fixation protein [Candidatus Liberibacter asiaticus str. psy62] Length = 189 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 189/189 (100%), Positives = 189/189 (100%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF Sbjct: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR Sbjct: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV Sbjct: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 Query: 181 PEVKDIRTV 189 PEVKDIRTV Sbjct: 181 PEVKDIRTV 189 >gi|126740480|ref|ZP_01756167.1| nifU domain protein [Roseobacter sp. SK209-2-6] gi|126718281|gb|EBA14996.1| nifU domain protein [Roseobacter sp. SK209-2-6] Length = 187 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 101/190 (53%), Positives = 137/190 (72%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F NA+ AE SPLA R+F+ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLETGTADFPNAEAAENSPLAQRVFAAAGVTGVFFGNDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + +W+H++P +LG IMEHF SG P+++ GG G + D+ VV Sbjct: 61 VTVTKSEDVEWDHIKPAILGAIMEHFQSGQPVLNAGG-----AQSSGHAEHSGEDAEVVN 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IK++LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKDLLDSRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|260426420|ref|ZP_05780399.1| scaffold protein Nfu/NifU [Citreicella sp. SE45] gi|260420912|gb|EEX14163.1| scaffold protein Nfu/NifU [Citreicella sp. SE45] Length = 185 Score = 288 bits (737), Expect = 3e-76, Method: Composition-based stats. Identities = 104/190 (54%), Positives = 134/190 (70%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F NA A+ SPLA R+FS+ G+ V+ G DF Sbjct: 1 MFIQTESTPNPATLKFLPGQAVLGAGTADFPNADGADASPLARRLFSVTGVTGVFLGSDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV KD DW+H++P VLG IMEHF SGDP++ G G F D +V Sbjct: 61 VTVTKDDGADWDHVKPAVLGAIMEHFQSGDPVMAGEGGSS------GHAAFDGEDKEIVG 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 115 QIKELLDSRVRPAVAQDGGDITFHGFERGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 175 IPEVTEVRPV 184 >gi|148251664|ref|YP_001236249.1| putative nifU protein [Bradyrhizobium sp. BTAi1] gi|146403837|gb|ABQ32343.1| putative nifU protein [Bradyrhizobium sp. BTAi1] Length = 189 Score = 288 bits (737), Expect = 3e-76, Method: Composition-based stats. Identities = 101/188 (53%), Positives = 143/188 (76%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKFIPG+VVL G + FS+ + A SPLA R+F+I G+ V++G DF Sbjct: 1 MFIQTEATPNPATLKFIPGRVVLPSGTMEFSSREAAARSPLAERLFAIGGVTGVFYGADF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ITV K+ +W+HL+P +LG IMEH++SG P++ +G + D + E+D+ V Sbjct: 61 ITVTKNDGEWQHLKPAILGAIMEHYMSGAPLLADGSAANDDATDEDDEFYDEADTETVGM 120 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IK+++++RVRPAVA DGGDI F+G++DGIV+L+M+GACSGCPS++ TL++G+ N+L HFV Sbjct: 121 IKDLIESRVRPAVANDGGDITFRGFKDGIVYLNMKGACSGCPSSTATLQHGIQNLLKHFV 180 Query: 181 PEVKDIRT 188 PEV ++R Sbjct: 181 PEVVEVRP 188 >gi|259415063|ref|ZP_05738985.1| NifU domain protein [Silicibacter sp. TrichCH4B] gi|259348973|gb|EEW60727.1| NifU domain protein [Silicibacter sp. TrichCH4B] Length = 187 Score = 288 bits (737), Expect = 3e-76, Method: Composition-based stats. Identities = 100/190 (52%), Positives = 135/190 (71%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A SPLA RIF++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLDAGTADFPSAEAASKSPLAQRIFAVSGVTGVFFGNDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV KD +W+H++P VLG +MEH+ SG P+I G + G + D +V Sbjct: 61 VTVTKDDSVEWDHIKPAVLGAVMEHYQSGQPVIDEG-----QQQASGHAEHTGEDGEIVN 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDSRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|146337209|ref|YP_001202257.1| putative nifU protein (C-terminal fragment) [Bradyrhizobium sp. ORS278] gi|146190015|emb|CAL74007.1| putative nifU protein (C-terminal fragment) [Bradyrhizobium sp. ORS278] Length = 189 Score = 287 bits (736), Expect = 4e-76, Method: Composition-based stats. Identities = 100/188 (53%), Positives = 141/188 (75%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKFIPG+VVL G + F++ A SPLA R+F++ G+ V++G DF Sbjct: 1 MFIQTEATPNPATLKFIPGRVVLPAGTMEFASRDAAARSPLAERLFAVDGVTGVFYGADF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ITV K +W+HL+P +LG IMEH++SG P++ +G + D F E+D+ V Sbjct: 61 ITVTKSDGEWQHLKPAILGAIMEHYMSGAPLLADGSAANDASADEDDEFFDEADTETVGM 120 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IK+++++RVRPAVA DGGDI F+G++DGIV+L+M+GACSGCPS++ TL++G+ N+L HFV Sbjct: 121 IKDLIESRVRPAVANDGGDITFRGFKDGIVYLNMKGACSGCPSSTATLQHGIQNLLKHFV 180 Query: 181 PEVKDIRT 188 PEV ++R Sbjct: 181 PEVVEVRP 188 >gi|260431494|ref|ZP_05785465.1| NifU domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415322|gb|EEX08581.1| NifU domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 187 Score = 287 bits (735), Expect = 5e-76, Method: Composition-based stats. Identities = 101/190 (53%), Positives = 135/190 (71%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F A+ AE SPLA RIF++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEAGTADFPTAEAAENSPLAKRIFAVKGVTGVFFGNDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV KD W+H++P +LG +MEH+ SG PI+ +G G + DS +V Sbjct: 61 VTVTKDDDVQWDHIKPAILGAVMEHYQSGQPIMGDGADA-----ASGHAEHTGEDSEIVN 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDSRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|254474955|ref|ZP_05088341.1| NifU domain protein [Ruegeria sp. R11] gi|214029198|gb|EEB70033.1| NifU domain protein [Ruegeria sp. R11] Length = 187 Score = 287 bits (734), Expect = 6e-76, Method: Composition-based stats. Identities = 101/190 (53%), Positives = 135/190 (71%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A SPLA RIF++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEMGTADFPSAEAAGSSPLAQRIFAVSGVTGVFFGNDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+H++P +LG +MEHF SG P+I GG G + D +V Sbjct: 61 VTVTKADGVEWDHIKPAILGAVMEHFQSGQPVISEGG-----EQTSGHAEHTGEDGEIVN 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDSRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|239830990|ref|ZP_04679319.1| Scaffold protein Nfu/NifU [Ochrobactrum intermedium LMG 3301] gi|239823257|gb|EEQ94825.1| Scaffold protein Nfu/NifU [Ochrobactrum intermedium LMG 3301] Length = 211 Score = 286 bits (732), Expect = 1e-75, Method: Composition-based stats. Identities = 103/190 (54%), Positives = 139/190 (73%), Gaps = 1/190 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEI-SPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VV+ EG F + A SPLA+++FS+PG+ V+FGYD Sbjct: 22 MFIQTETTPNPATLKFLPGKVVMPEGTADFRDPSTAGNTSPLAAKLFSVPGVTGVFFGYD 81 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV KD +W+HL+P +LG IMEHF+SG P + D F E+D+ V+ Sbjct: 82 FITVTKDDGEWQHLKPAILGTIMEHFMSGAPAMAGNSNADAAAAHGDEEFFDEADAETVE 141 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+++ RVRPAVA+DGGDI F+G+ +G VFL+M+GACSGCPS++ TLK+G+ N+L HF Sbjct: 142 IIKELIETRVRPAVAQDGGDITFRGFENGTVFLNMKGACSGCPSSTATLKHGIQNLLRHF 201 Query: 180 VPEVKDIRTV 189 VPEV+ + + Sbjct: 202 VPEVQQVEQI 211 >gi|163738966|ref|ZP_02146379.1| nitrogen-fixing NifU-like protein [Phaeobacter gallaeciensis BS107] gi|163741789|ref|ZP_02149179.1| nifU domain protein [Phaeobacter gallaeciensis 2.10] gi|161384962|gb|EDQ09341.1| nifU domain protein [Phaeobacter gallaeciensis 2.10] gi|161387771|gb|EDQ12127.1| nitrogen-fixing NifU-like protein [Phaeobacter gallaeciensis BS107] Length = 187 Score = 286 bits (732), Expect = 1e-75, Method: Composition-based stats. Identities = 101/190 (53%), Positives = 133/190 (70%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F A A SPLA RIF++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEMGTADFPTADAAGSSPLAQRIFAVSGVTGVFFGNDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+H++P +LG +MEHF SG P+I GG G + D +V Sbjct: 61 VTVTKADTVEWDHIKPAILGAVMEHFQSGQPVISEGG-----EQTSGHAEHTGEDGEIVN 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDSRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|149202972|ref|ZP_01879943.1| nitrogen-fixing NifU-like protein [Roseovarius sp. TM1035] gi|149143518|gb|EDM31554.1| nitrogen-fixing NifU-like protein [Roseovarius sp. TM1035] Length = 187 Score = 285 bits (731), Expect = 2e-75, Method: Composition-based stats. Identities = 99/190 (52%), Positives = 136/190 (71%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+++ SPLA RIF +PG++ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEAGTADFPSAEKSGSSPLAERIFRVPGVSGVFFGNDF 60 Query: 61 ITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + +W+H++P +LG IMEH+ SG P++ G + DSA+V Sbjct: 61 VTVTKGEAIEWDHIKPAILGAIMEHYQSGQPVMLGESAV-----ASGHAEHTGEDSAIVN 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDTRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTITLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|83943871|ref|ZP_00956328.1| nifU domain protein [Sulfitobacter sp. EE-36] gi|83953512|ref|ZP_00962234.1| nifU domain protein [Sulfitobacter sp. NAS-14.1] gi|83842480|gb|EAP81648.1| nifU domain protein [Sulfitobacter sp. NAS-14.1] gi|83845118|gb|EAP82998.1| nifU domain protein [Sulfitobacter sp. EE-36] Length = 186 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 99/190 (52%), Positives = 134/190 (70%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F + A SPLA+R+F++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEMGTADFPAPEAASASPLATRLFAVEGVTGVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +T+ K D +W+HL+P +LG IMEHF SG P++ G G + D A+V Sbjct: 61 VTITKADGIEWDHLKPALLGAIMEHFQSGQPVMETG-----HDHASGHAEHTGEDGAIVG 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDSRVRPAVAQDGGDITFHGFERGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|149913250|ref|ZP_01901784.1| NifU-like domain protein [Roseobacter sp. AzwK-3b] gi|149813656|gb|EDM73482.1| NifU-like domain protein [Roseobacter sp. AzwK-3b] Length = 187 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 98/190 (51%), Positives = 132/190 (69%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F A+ ++ SPLA+R+F + G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEAGTADFPTAEASDKSPLATRLFGVKGVRGVFFGNDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+H++P +LG IMEHF SG P++ G DS +V Sbjct: 61 VTVTKTDDAEWDHIKPSILGAIMEHFQSGQPVMAVDA-----EHASGHAAHEGEDSEIVG 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDTRVRPAVAQDGGDITFHGFERGVVYLHMQGACAGCPSSTITLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|89068101|ref|ZP_01155518.1| Nitrogen-fixing NifU [Oceanicola granulosus HTCC2516] gi|89046340|gb|EAR52397.1| Nitrogen-fixing NifU [Oceanicola granulosus HTCC2516] Length = 186 Score = 285 bits (729), Expect = 3e-75, Method: Composition-based stats. Identities = 97/190 (51%), Positives = 133/190 (70%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ VL G F++ + A SPLA RIFS+ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGEAVLDAGTADFASPEAANTSPLARRIFSVQGVTGVFFGTDF 60 Query: 61 ITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV KD+ +W+H++P +LG IMEH+ SG P++ G + D +V Sbjct: 61 VTVTKDEATEWDHVKPAILGAIMEHYQSGAPVVEGAEGA------TGHAEHTGEDGEIVA 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 115 QIKELLDTRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 175 IPEVVEVRPV 184 >gi|310815348|ref|YP_003963312.1| NifU domain protein [Ketogulonicigenium vulgare Y25] gi|308754083|gb|ADO42012.1| NifU domain protein [Ketogulonicigenium vulgare Y25] Length = 185 Score = 283 bits (726), Expect = 5e-75, Method: Composition-based stats. Identities = 101/190 (53%), Positives = 134/190 (70%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A SPLA R+F++ G+ V+ GYDF Sbjct: 1 MFIQTESTPNPATLKFLPGQQVLELGTADFPSAEAATTSPLAKRLFAVDGVTGVFLGYDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV K D +W HL+P VLG IMEHF SG P++ + + D D A+V+ Sbjct: 61 ITVTKTDNLEWPHLKPAVLGAIMEHFQSGQPVMEGEAVSAHRAHD-------GEDGAIVE 113 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+G+C+GCPS++ TLK G+ N+L H+ Sbjct: 114 QIKELLDTRVRPAVAQDGGDITFHGFDRGVVYLHMQGSCAGCPSSTLTLKMGIENLLRHY 173 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 174 IPEVLEVRPV 183 >gi|301758232|ref|XP_002914967.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like [Ailuropoda melanoleuca] Length = 420 Score = 283 bits (726), Expect = 6e-75, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 118/191 (61%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 225 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 284 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ E D VV Sbjct: 285 ITVTKESEELDWNLLKPDIYATIMDFFASGLPLVTEETSSGEAG--------SEEDDEVV 336 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 337 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 396 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 397 YIPEVEGVEQV 407 >gi|126725029|ref|ZP_01740872.1| nifU domain protein [Rhodobacterales bacterium HTCC2150] gi|126706193|gb|EBA05283.1| nifU domain protein [Rhodobacterales bacterium HTCC2150] Length = 187 Score = 283 bits (726), Expect = 6e-75, Method: Composition-based stats. Identities = 102/190 (53%), Positives = 134/190 (70%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A+ SPLA+RIF I GIA V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLETGTADFPSAETADQSPLATRIFGIQGIAGVFFGNDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + +W+H++P +LG IMEHF SG P++ + E D +V Sbjct: 61 VTVTKAENSEWDHIKPAILGAIMEHFQSGQPVLSGENTAPAHAEAAN-----EEDKEIVG 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ GIV+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDTRVRPAVAQDGGDITFHGFDRGIVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVVEVRPV 185 >gi|84683414|ref|ZP_01011317.1| nifU domain protein [Maritimibacter alkaliphilus HTCC2654] gi|84668157|gb|EAQ14624.1| nifU domain protein [Rhodobacterales bacterium HTCC2654] Length = 186 Score = 283 bits (725), Expect = 7e-75, Method: Composition-based stats. Identities = 97/190 (51%), Positives = 134/190 (70%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A SPLA R+F++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQEVLEAGTADFPSAEAAAKSPLAQRVFAVNGVKGVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+H++P +LG IMEHF SG P++ G + + D+ +V Sbjct: 61 VTVTKADDVEWDHVKPAILGAIMEHFQSGAPVMGEGPR------EAAHAEHDGPDAEIVV 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IK++LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 115 QIKDLLDTRVRPAVAQDGGDITFHGFERGVVYLHMQGACAGCPSSTLTLKMGIENLLKHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 175 IPEVTEVRPV 184 >gi|325087305|gb|ADY77002.1| iron-sulfur cluster assembly protein NFU4 [Ipomoea batatas] gi|325087311|gb|ADY77005.1| iron-sulfur cluster assembly protein NFU4 [Ipomoea batatas] Length = 281 Score = 283 bits (725), Expect = 7e-75, Method: Composition-based stats. Identities = 89/191 (46%), Positives = 117/191 (61%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +L F PG+ V+ G+ F NA+ A SPLA +F I GI V++G DF Sbjct: 80 MFIQTQSTPNPLSLMFYPGKPVMETGSADFPNARSAMNSPLAKALFGIDGITRVFYGSDF 139 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D W+ L+P + IM+ F SG P+ + E DS V Sbjct: 140 VTVTKSDDASWDLLKPEIFAAIMDFFSSGKPLFLDSNTA-----ASMDTAIQEDDSETVA 194 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 195 MIKELLETRIRPAVQDDGGDIEYRGFDADSGIVKLRMQGACSGCPSSSVTLKSGIENMLM 254 Query: 178 HFVPEVKDIRT 188 H+VPEVK + Sbjct: 255 HYVPEVKGVEQ 265 >gi|260574570|ref|ZP_05842574.1| Scaffold protein Nfu/NifU [Rhodobacter sp. SW2] gi|259023466|gb|EEW26758.1| Scaffold protein Nfu/NifU [Rhodobacter sp. SW2] Length = 186 Score = 283 bits (725), Expect = 8e-75, Method: Composition-based stats. Identities = 104/190 (54%), Positives = 136/190 (71%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A SPLA RIF+ G+ASV+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLELGTADFPSAEAAGKSPLAQRIFAAGGVASVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D W+H++P +LG IMEHF SG P+I G D DS +V+ Sbjct: 61 VTVTKTDTAAWDHIKPGILGAIMEHFQSGAPVIEGEQAAS------GHADHDGPDSDIVR 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 115 QIKELLDSRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R+V Sbjct: 175 IPEVLEVRSV 184 >gi|110636361|ref|YP_676569.1| nitrogen-fixing NifU-like [Mesorhizobium sp. BNC1] gi|110287345|gb|ABG65404.1| nitrogen-fixing NifU-like protein [Chelativorans sp. BNC1] Length = 189 Score = 283 bits (725), Expect = 8e-75, Method: Composition-based stats. Identities = 106/190 (55%), Positives = 142/190 (74%), Gaps = 3/190 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEI-SPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VVL EG F +A A+ SPLA+R+F +PG+ V+FG+D Sbjct: 1 MFIQTEATPNPATLKFLPGRVVLEEGTADFRSADSAQAVSPLAARLFEVPGVTGVFFGFD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV KD DW+HL+P +LG IMEHF+SG P++ + + S + E+D +V Sbjct: 61 FITVTKDGADWQHLKPAILGTIMEHFMSGQPVM--AANDGSERETASSEFYDEADEEIVT 118 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ RVRPAVA+DGGDI F+GY +G VFL M+GAC+GCPS++ TLK+G+ N+L+HF Sbjct: 119 TIKELLETRVRPAVAQDGGDITFRGYENGTVFLHMKGACAGCPSSTATLKHGIQNLLHHF 178 Query: 180 VPEVKDIRTV 189 VPEV+ + V Sbjct: 179 VPEVQQVEQV 188 >gi|114764450|ref|ZP_01443675.1| nifU domain protein [Pelagibaca bermudensis HTCC2601] gi|114543017|gb|EAU46036.1| nifU domain protein [Roseovarius sp. HTCC2601] Length = 186 Score = 283 bits (724), Expect = 9e-75, Method: Composition-based stats. Identities = 100/190 (52%), Positives = 133/190 (70%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ + SPLA R+F + G+ V+ G DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLGAGTADFPSAEGTDASPLAKRLFGVTGVTGVFLGSDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D DW+H++P VLG IMEHF SG+P++ G G F D +V Sbjct: 61 VTVTKADGADWDHVKPAVLGAIMEHFQSGEPVMAGEGGAS------GHAAFEGEDEEIVG 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 115 QIKELLDSRVRPAVAQDGGDITFHGFERGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 175 IPEVTEVRPV 184 >gi|254487441|ref|ZP_05100646.1| NifU domain protein [Roseobacter sp. GAI101] gi|214044310|gb|EEB84948.1| NifU domain protein [Roseobacter sp. GAI101] Length = 203 Score = 283 bits (724), Expect = 9e-75, Method: Composition-based stats. Identities = 99/190 (52%), Positives = 133/190 (70%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F + A SPLA+R+F++ G+ V+FG DF Sbjct: 18 MFIQTESTPNPATLKFLPGQTVLEMGTADFPAPEAASSSPLATRLFAVDGVTGVFFGTDF 77 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+HL+P +LG IMEHF SG ++ G G + D A+V Sbjct: 78 VTVTKADTIEWDHLKPALLGAIMEHFQSGQSVMEQG-----HEHASGHAEHTGEDGAIVG 132 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 133 QIKELLDSRVRPAVAQDGGDITFHGFERGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 192 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 193 IPEVTEVRPV 202 >gi|110678955|ref|YP_681962.1| NifU-like domain-containing protein [Roseobacter denitrificans OCh 114] gi|109455071|gb|ABG31276.1| NifU-like domain protein [Roseobacter denitrificans OCh 114] Length = 187 Score = 283 bits (724), Expect = 9e-75, Method: Composition-based stats. Identities = 99/190 (52%), Positives = 133/190 (70%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A+ SPLA R+F++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEMGTADFPSAETADKSPLAERVFAVEGVTGVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D DW+H++P +LG IMEHF SG P++ G + D +V Sbjct: 61 VTVTKADNVDWDHIKPALLGAIMEHFQSGQPVMAGD-----HTPTSGHAEHTGDDGVIVN 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDTRVRPAVAQDGGDITFHGFERGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|260462744|ref|ZP_05810949.1| Scaffold protein Nfu/NifU [Mesorhizobium opportunistum WSM2075] gi|259031388|gb|EEW32659.1| Scaffold protein Nfu/NifU [Mesorhizobium opportunistum WSM2075] Length = 189 Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats. Identities = 106/190 (55%), Positives = 137/190 (72%), Gaps = 3/190 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+ VL+EG F +A A SPLA R+F IPG+ V+FGYD Sbjct: 1 MFIQTESTPNPATLKFLPGKEVLLEGTADFRDADSAAVASPLAGRLFEIPGVTGVFFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV KD DW+HL+P +LG IMEHF+SG P++ G + ++D +V Sbjct: 61 FITVTKDGPDWQHLKPAILGAIMEHFMSGAPVMAKAGPAAETSQTGE--FYDKADEELVI 118 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+LD RVRPAVA+DGGDI F+G+ +G VFL M+GAC+GCPS++ TLK+G+ N+L HF Sbjct: 119 TIKELLDTRVRPAVAQDGGDITFRGFENGTVFLHMKGACAGCPSSTATLKHGIQNLLRHF 178 Query: 180 VPEVKDIRTV 189 VPEV+ + V Sbjct: 179 VPEVQQVEQV 188 >gi|84500284|ref|ZP_00998550.1| nifU domain protein [Oceanicola batsensis HTCC2597] gi|84392218|gb|EAQ04486.1| nifU domain protein [Oceanicola batsensis HTCC2597] Length = 187 Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats. Identities = 98/190 (51%), Positives = 134/190 (70%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ + SPLA+R+F++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEAGTADFPSAETSGKSPLAARLFAVEGVTGVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D+ W+H++P +LG IMEH+ SG P++ G G D D +V Sbjct: 61 VTVTKADETQWDHIKPALLGAIMEHYQSGQPVMATG-----DQPTSGHADHEGEDQEIVV 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDTRVRPAVAQDGGDITFHGFDRGVVYLYMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|13474434|ref|NP_106002.1| hypothetical protein mll5315 [Mesorhizobium loti MAFF303099] gi|14025187|dbj|BAB51788.1| mll5315 [Mesorhizobium loti MAFF303099] Length = 189 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 106/190 (55%), Positives = 137/190 (72%), Gaps = 3/190 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEI-SPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+ VL+EG F +A A SPLA R+F IPG+ V+FGYD Sbjct: 1 MFIQTESTPNPATLKFLPGKEVLLEGTADFRDADSAATASPLAGRLFEIPGVTGVFFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV KD DW+HL+P +LG IMEHF+SG P++ G + ++D +V Sbjct: 61 FITVTKDGPDWQHLKPAILGAIMEHFMSGAPVMAKSGPAAETSQTGE--FYDKADEELVI 118 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+LD RVRPAVA+DGGDI F+G+ +G VFL M+GAC+GCPS++ TLK+G+ N+L HF Sbjct: 119 TIKELLDTRVRPAVAQDGGDITFRGFENGTVFLHMKGACAGCPSSTATLKHGIQNLLRHF 178 Query: 180 VPEVKDIRTV 189 VPEV+ + V Sbjct: 179 VPEVQQVEQV 188 >gi|163734126|ref|ZP_02141567.1| NifU-like domain protein [Roseobacter litoralis Och 149] gi|161392662|gb|EDQ16990.1| NifU-like domain protein [Roseobacter litoralis Och 149] Length = 187 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 101/190 (53%), Positives = 133/190 (70%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A+ SPLA RIF+I G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEMGTADFPSAETADKSPLAERIFAIEGVTGVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D DW+H++P +LG IMEHF SG P++ G + D +V Sbjct: 61 VTVTKADSVDWDHIKPGLLGAIMEHFQSGQPVMAGD-----HTPTSGHAEHTGEDGVIVN 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDTRVRPAVAQDGGDITFHGFERGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|153007498|ref|YP_001368713.1| scaffold protein Nfu/NifU [Ochrobactrum anthropi ATCC 49188] gi|151559386|gb|ABS12884.1| Scaffold protein Nfu/NifU [Ochrobactrum anthropi ATCC 49188] Length = 190 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 103/190 (54%), Positives = 140/190 (73%), Gaps = 1/190 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEI-SPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VV+ EG F +A A SPLA+++FS+PG+ V+FGYD Sbjct: 1 MFIQTETTPNPATLKFLPGKVVMPEGTADFRDASTAGNTSPLAAKLFSVPGVTGVFFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K+ +W+HL+P +LG IMEHF+SG P + D F E+D+ V+ Sbjct: 61 FITVTKEDGEWQHLKPAILGTIMEHFMSGAPAMAGNSNADAAAAHGEEEFFDEADAETVE 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+++ RVRPAVA+DGGDI F+G+ +G VFL+M+GACSGCPS++ TLK+G+ N+L HF Sbjct: 121 IIKELIETRVRPAVAQDGGDITFRGFENGTVFLNMKGACSGCPSSTATLKHGIQNLLRHF 180 Query: 180 VPEVKDIRTV 189 VPEV+ + + Sbjct: 181 VPEVQQVEQI 190 >gi|242086973|ref|XP_002439319.1| hypothetical protein SORBIDRAFT_09g004310 [Sorghum bicolor] gi|241944604|gb|EES17749.1| hypothetical protein SORBIDRAFT_09g004310 [Sorghum bicolor] Length = 268 Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 87/191 (45%), Positives = 122/191 (63%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +L F PG+ V+ G+ F NA+ A SPLA +F+I G+ ++FG DF Sbjct: 71 MFIQTQSTPNPQSLMFYPGKPVMEVGSSDFPNARTAMTSPLAKALFAIDGVTRIFFGSDF 130 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K ++ W++L+P V IM+ + SG P+ + E DS +V Sbjct: 131 VTVTKSEETSWDYLKPEVFAAIMDFYSSGQPLFLDSNAA-----ASMDTAIHEDDSEIVA 185 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ +GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 186 MIKELLETRIRPAVQDDGGDIEYRGFDPENGIVKLKMQGACSGCPSSSVTLKSGIENMLM 245 Query: 178 HFVPEVKDIRT 188 H+VPEVK + Sbjct: 246 HYVPEVKGVEQ 256 >gi|319779939|ref|YP_004139415.1| Scaffold protein Nfu/NifU [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165827|gb|ADV09365.1| Scaffold protein Nfu/NifU [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 189 Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 107/190 (56%), Positives = 137/190 (72%), Gaps = 3/190 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+ VLVEG F +A A SPLA R+F IPG+ V+FGYD Sbjct: 1 MFIQTESTPNPATLKFLPGKEVLVEGTADFRDADSAAVASPLAGRLFEIPGVTGVFFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV KD DW+HL+P +LG IMEHF+SG P++ G + ++D +V Sbjct: 61 FITVTKDGPDWQHLKPAILGAIMEHFMSGAPVMAKAGPAAETSQTGE--FYDKADEELVI 118 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+LD RVRPAVA+DGGDI F+G+ +G VFL M+GAC+GCPS++ TLK+G+ N+L HF Sbjct: 119 TIKELLDTRVRPAVAQDGGDITFRGFENGTVFLHMKGACAGCPSSTATLKHGIQNLLRHF 178 Query: 180 VPEVKDIRTV 189 VPEV+ + V Sbjct: 179 VPEVQQVEQV 188 >gi|222084688|ref|YP_002543217.1| nitrogen fixation protein [Agrobacterium radiobacter K84] gi|221722136|gb|ACM25292.1| nitrogen fixation protein [Agrobacterium radiobacter K84] Length = 188 Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 108/189 (57%), Positives = 146/189 (77%), Gaps = 1/189 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VV+ G F +A EAE+SPLA+R+F IPG++ VYFGYDF Sbjct: 1 MFIQTEATPNPATLKFLPGKVVMESGTAEFRSADEAEVSPLAARLFDIPGVSGVYFGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 I+V KD +W+HL+P +LG IMEHF+SG P++ + D G F E D+ +V Sbjct: 61 ISVSKDDQEWQHLKPAILGSIMEHFMSGKPVMGAASVLSEAQDASGE-FFDEGDATIVLT 119 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+L+ RVRPAVA+DGGDI F+G+RDG V+L+M+G+C+GCPS++ TLK+G+ N+L HFV Sbjct: 120 IKELLETRVRPAVAQDGGDITFRGFRDGKVYLNMKGSCAGCPSSTATLKHGIQNLLRHFV 179 Query: 181 PEVKDIRTV 189 PEV+++ V Sbjct: 180 PEVQEVEAV 188 >gi|326497811|dbj|BAJ94768.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326521670|dbj|BAK00411.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 268 Score = 282 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 89/191 (46%), Positives = 121/191 (63%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +L F PG+ V+ G+ F NA+ A SPLA +F+I G+ V+FG DF Sbjct: 68 MFIQTQSTPNPQSLMFHPGKPVMDVGSSDFPNARTAMTSPLAKALFAIEGVTRVFFGSDF 127 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D+ W++L+P V IM+ + SG P+ + E DS +V Sbjct: 128 VTVTKSDETSWDYLKPEVFAAIMDFYSSGQPLFLDSNTA-----AAMDTAIHEDDSEIVA 182 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 183 MIKELLETRIRPAVQDDGGDIEYRGFEPETGIVKLKMQGACSGCPSSSVTLKSGIENMLM 242 Query: 178 HFVPEVKDIRT 188 H+VPEVK + Sbjct: 243 HYVPEVKGVEQ 253 >gi|56695297|ref|YP_165645.1| NifU domain-containing protein [Ruegeria pomeroyi DSS-3] gi|56677034|gb|AAV93700.1| nifU domain protein [Ruegeria pomeroyi DSS-3] Length = 187 Score = 282 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 98/190 (51%), Positives = 136/190 (71%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ AE SPLA+RIF++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEVGTADFPSAEAAEKSPLAARIFAVSGVTGVFFGNDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + +W+H++P +LG +MEH+ SG P++ G G + D+ VV Sbjct: 61 VTVTKAEGVEWDHIKPAILGAVMEHYQSGQPVM-----GADAQTGSGHAEHSGEDAEVVT 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IK +LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKALLDSRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|163744246|ref|ZP_02151606.1| NifU-like domain protein [Oceanibulbus indolifex HEL-45] gi|161381064|gb|EDQ05473.1| NifU-like domain protein [Oceanibulbus indolifex HEL-45] Length = 186 Score = 281 bits (720), Expect = 3e-74, Method: Composition-based stats. Identities = 96/190 (50%), Positives = 128/190 (67%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F SPLA R+F++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEMGTADFPTPDAGATSPLAQRLFAVEGVTGVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+H++P +LG IMEHF SGD ++ G D +V Sbjct: 61 VTVTKQDAVEWDHVKPALLGAIMEHFQSGDAVM-----ASDHQPTSGHAAHDGEDGEIVG 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDSRVRPAVAQDGGDITFHGFERGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVTEVRPV 185 >gi|332557651|ref|ZP_08411973.1| Nitrogen-fixing NifU domain protein [Rhodobacter sphaeroides WS8N] gi|332275363|gb|EGJ20678.1| Nitrogen-fixing NifU domain protein [Rhodobacter sphaeroides WS8N] Length = 186 Score = 281 bits (720), Expect = 3e-74, Method: Composition-based stats. Identities = 98/190 (51%), Positives = 133/190 (70%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ+VL G F+ + A SPLA RIF++ G+++V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQMVLEAGTADFATPEAAATSPLARRIFAVGGVSAVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 + V K D+ W+H++P +LG IMEH+ SG P++ G D VV+ Sbjct: 61 VAVTKADEVAWDHIKPAILGAIMEHYQSGAPVLEGEQAAS------GHASHDGPDEDVVR 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ GIV+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 115 QIKELLDTRVRPAVAQDGGDITFHGFDRGIVYLHMQGACAGCPSSTLTLKMGIENLLRHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 175 IPEVLEVRPV 184 >gi|255264504|ref|ZP_05343846.1| NifU domain protein [Thalassiobium sp. R2A62] gi|255106839|gb|EET49513.1| NifU domain protein [Thalassiobium sp. R2A62] Length = 187 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 98/190 (51%), Positives = 133/190 (70%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ AE SPLA RIF++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLDMGTADFPSAEAAEKSPLAKRIFAVEGVTGVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+H++P +LG +MEH+ SG +I G + D+ +V Sbjct: 61 VTVTKGDDIEWDHIKPAILGAVMEHYQSGAAVIDGEAPTSG-----GHAEHTGEDAEIVG 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDTRVRPAVAQDGGDITFLGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVLEVRPV 185 >gi|159045379|ref|YP_001534173.1| hypothetical protein Dshi_2839 [Dinoroseobacter shibae DFL 12] gi|157913139|gb|ABV94572.1| conserved hypothetical protein [Dinoroseobacter shibae DFL 12] Length = 187 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 100/190 (52%), Positives = 134/190 (70%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A SPLA RIF++ G+ +V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLETGTADFPSAEAAGSSPLAGRIFAVNGVTAVFFGTDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV KD+ +W+H++P VLG +MEH+ SGD ++ G DS +V Sbjct: 61 VTVTKDEGVEWDHIKPAVLGAVMEHYQSGDAVMTGEASA-----PAGHAAHDGPDSEIVG 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ GIV+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDTRVRPAVAQDGGDITFHGFDRGIVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVLEVRPV 185 >gi|254461257|ref|ZP_05074673.1| NifU domain protein [Rhodobacterales bacterium HTCC2083] gi|206677846|gb|EDZ42333.1| NifU domain protein [Rhodobacteraceae bacterium HTCC2083] Length = 188 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 102/190 (53%), Positives = 138/190 (72%), Gaps = 5/190 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A A++SPLA+RIF++ G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEMGTADFPSAVGADVSPLAARIFAVEGVTGVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+H++P +LG IMEHF SG ++ GDM + G + D +V Sbjct: 61 VTVTKADAVEWDHIKPALLGAIMEHFQSGAAVMA----GDMAPPNSGHAEHTGEDGEIVV 116 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD+RVRPAVA+DGGDI F G+ GIV+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 117 QIKELLDSRVRPAVAQDGGDITFHGFERGIVYLHMQGACAGCPSSTLTLKMGIENLLRHY 176 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 177 IPEVTEVRPV 186 >gi|254510570|ref|ZP_05122637.1| NifU domain protein [Rhodobacteraceae bacterium KLH11] gi|221534281|gb|EEE37269.1| NifU domain protein [Rhodobacteraceae bacterium KLH11] Length = 187 Score = 281 bits (719), Expect = 4e-74, Method: Composition-based stats. Identities = 99/190 (52%), Positives = 135/190 (71%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ AE SPLA+RIF + G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEAGTADFPSAEAAEKSPLATRIFGVAGVTGVFFGNDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D W+H++P +LG +MEH+ SG P++ G G + D+ +V Sbjct: 61 VTVTKSDDMQWDHIKPAILGAVMEHYQSGQPVM-----GTDADTGAGHAEHSGEDAEIVD 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IK++LD+RVRPAVA+DGGDI F G+ GIV+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKDLLDSRVRPAVAQDGGDITFHGFDRGIVYLHMQGACAGCPSSTITLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVVEVRPV 185 >gi|119383283|ref|YP_914339.1| NifU domain-containing protein [Paracoccus denitrificans PD1222] gi|119373050|gb|ABL68643.1| nitrogen-fixing NifU domain protein [Paracoccus denitrificans PD1222] Length = 184 Score = 280 bits (718), Expect = 5e-74, Method: Composition-based stats. Identities = 98/190 (51%), Positives = 127/190 (66%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ VL G F A SPLA RIF++PG+ V+ G DF Sbjct: 1 MFIQTETTPNPATLKFLPGETVLGSGTADFPAPDTAAASPLARRIFAVPGVTGVFLGSDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + W+HL+P VLG IMEH+ SG P I D D+ +V Sbjct: 61 VTVTKAEDAVWDHLKPSVLGAIMEHYQSGAPAIEGATASGHNDQDGP-------DAEIVN 113 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 114 QIKELLDTRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 173 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 174 IPEVTEVRPV 183 >gi|49476032|ref|YP_034073.1| hypothetical protein BH13490 [Bartonella henselae str. Houston-1] gi|49238840|emb|CAF28122.1| hypothetical protein BH13490 [Bartonella henselae str. Houston-1] Length = 192 Score = 280 bits (717), Expect = 6e-74, Method: Composition-based stats. Identities = 102/189 (53%), Positives = 143/189 (75%), Gaps = 1/189 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG VVL EG + F +++EA + SPLA+++F+IP + V+FGYD Sbjct: 1 MFIQTETTPNPATLKFLPGCVVLSEGVLEFRDSEEAAKNSPLAAKLFNIPNVNGVFFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K + +W+HL+P +LG IMEHF+SGDP+I+ + + + E D+ +V Sbjct: 61 FITVSKKEGEWQHLKPAILGTIMEHFLSGDPVINTNATRQAQTHALNEEFYNEKDADIVL 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ R+RPAVA DGGDI F+G+ +GIV+L+MRGAC+GCPS++ TLK+G+ N+L HF Sbjct: 121 TIKELLETRIRPAVANDGGDITFRGFENGIVYLNMRGACAGCPSSTATLKHGIENLLRHF 180 Query: 180 VPEVKDIRT 188 +PEV + Sbjct: 181 IPEVVGVEA 189 >gi|325291785|ref|YP_004277649.1| scaffold protein Nfu/NifU [Agrobacterium sp. H13-3] gi|325059638|gb|ADY63329.1| putative scaffold protein Nfu/NifU [Agrobacterium sp. H13-3] Length = 187 Score = 280 bits (717), Expect = 7e-74, Method: Composition-based stats. Identities = 111/189 (58%), Positives = 141/189 (74%), Gaps = 2/189 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VVL G F N +A+ SPLA R+F+IPG+ VYFG+DF Sbjct: 1 MFIQTEATPNPATLKFLPGKVVLESGTAEFLNPAQAQASPLAERLFTIPGVTGVYFGFDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ITV KD +W+HL+P +LG IMEHF+SG PI+ + + D F D +V Sbjct: 61 ITVTKDDAEWQHLKPAILGSIMEHFMSGRPIMGTAIAAE--VSDEEGEFFEAGDETIVAT 118 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+LD RVRPAVA+DGGDI F+G+RDG VFL+M+GACSGCPS++ TLK+GV N+L HFV Sbjct: 119 IKELLDTRVRPAVAQDGGDITFRGFRDGTVFLNMKGACSGCPSSTATLKHGVQNLLRHFV 178 Query: 181 PEVKDIRTV 189 PEV+++ V Sbjct: 179 PEVREVEAV 187 >gi|225464130|ref|XP_002264979.1| PREDICTED: similar to NFU4 (NFU domain protein 4) [Vitis vinifera] Length = 271 Score = 280 bits (717), Expect = 7e-74, Method: Composition-based stats. Identities = 88/191 (46%), Positives = 118/191 (61%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNPA+L F PG+ V+ G+ F N++ A SPLA ++ I GI V+FG DF Sbjct: 70 MFIQTQSTPNPASLMFYPGKPVMEVGSADFPNSRSAMSSPLAKSLYGIDGITRVFFGSDF 129 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV K D W+ ++P + IM+ + SG P+ + E DS V Sbjct: 130 ITVTKSDDASWDFIKPEIFAAIMDFYSSGKPLFLDSNTA-----AAMDTAIHEDDSETVA 184 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 185 MIKELLETRIRPAVQDDGGDIEYRGFDPETGIVKLKMQGACSGCPSSSVTLKSGIENMLM 244 Query: 178 HFVPEVKDIRT 188 H+VPEVK + Sbjct: 245 HYVPEVKGVEQ 255 >gi|299133388|ref|ZP_07026583.1| Scaffold protein Nfu/NifU [Afipia sp. 1NLS2] gi|298593525|gb|EFI53725.1| Scaffold protein Nfu/NifU [Afipia sp. 1NLS2] Length = 187 Score = 280 bits (716), Expect = 7e-74, Method: Composition-based stats. Identities = 101/188 (53%), Positives = 138/188 (73%), Gaps = 2/188 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ VL G + F++ A SPLA ++F IPG+ V++G DF Sbjct: 1 MFIQTETTPNPATLKFLPGRTVLDSGTMEFTSRDSAARSPLAVKLFEIPGVTGVFYGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +TV KD DW+HL+P +LG IMEH++SG PI+ +G D F E+D+ V Sbjct: 61 VTVTKDDGDWQHLKPAILGTIMEHYMSGGPILADGAQPDAGPH--AEEFFNEADAETVGI 118 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IK++L+ RVRPAVA DGGDI F+G++DGIVFL M+G+CSGCPS++ TLK+G+ N+L H+V Sbjct: 119 IKDILETRVRPAVASDGGDITFRGFKDGIVFLDMKGSCSGCPSSTATLKHGIQNLLKHYV 178 Query: 181 PEVKDIRT 188 P+V ++R Sbjct: 179 PDVVEVRP 186 >gi|126461658|ref|YP_001042772.1| NifU domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|221638629|ref|YP_002524891.1| nitrogen-fixing NifU domain-containing protein [Rhodobacter sphaeroides KD131] gi|126103322|gb|ABN76000.1| nitrogen-fixing NifU domain protein [Rhodobacter sphaeroides ATCC 17029] gi|221159410|gb|ACM00390.1| Nitrogen-fixing NifU domain protein [Rhodobacter sphaeroides KD131] Length = 186 Score = 280 bits (716), Expect = 8e-74, Method: Composition-based stats. Identities = 98/190 (51%), Positives = 132/190 (69%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ+VL G F+ + A SPLA RIF+ G+++V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQMVLEAGTADFATPEAAATSPLARRIFAAGGVSAVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 + V K D+ W+H++P +LG IMEH+ SG P++ G D VV+ Sbjct: 61 VAVTKADEVAWDHIKPAILGAIMEHYQSGAPVLEGEQAAS------GHASHDGPDEDVVR 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ GIV+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 115 QIKELLDTRVRPAVAQDGGDITFHGFDRGIVYLHMQGACAGCPSSTLTLKMGIENLLRHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 175 IPEVLEVRPV 184 >gi|84515908|ref|ZP_01003269.1| nifU domain protein [Loktanella vestfoldensis SKA53] gi|84510350|gb|EAQ06806.1| nifU domain protein [Loktanella vestfoldensis SKA53] Length = 187 Score = 280 bits (716), Expect = 9e-74, Method: Composition-based stats. Identities = 99/190 (52%), Positives = 132/190 (69%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F NA+ A+ SPLA RIF+ G++ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQNVLEVGTADFPNAEAAQHSPLAQRIFAAGGVSGVFFGIDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+H++P +LG IMEH+ SG ++ G + D +V Sbjct: 61 VTVTKADGAEWDHIKPGILGAIMEHYQSGQSVM-----AADHKPVSGHAEHSGEDGDIVT 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ GIV+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDTRVRPAVAQDGGDITFHGFDRGIVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVIEVRPV 185 >gi|238231487|ref|NP_001154157.1| HIRA-interacting protein 5 [Oncorhynchus mykiss] gi|225704456|gb|ACO08074.1| HIRA-interacting protein 5 [Oncorhynchus mykiss] Length = 250 Score = 280 bits (716), Expect = 9e-74, Method: Composition-based stats. Identities = 82/191 (42%), Positives = 122/191 (63%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKF+PG++VL +G + F+ +EA SPLA ++F I G+ V+ G DF Sbjct: 56 MFIQTQDTPNPNSLKFLPGRMVLEQGTMDFTAPREAYCSPLARQLFRIDGVKGVFLGPDF 115 Query: 61 ITVGKDQYD--WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K D W+ ++P V IM+ F SG P+++ + + D V+ Sbjct: 116 ITITKTDVDLEWKLIKPDVFAAIMDFFTSGLPVVNE------EDTPRADTAPSDDDDEVI 169 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++ G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 170 AMIKELLDTRIRPTVQEDGGDVLYCGFEDGIVKLKLQGSCTSCPSSMVTLKSGIQNMLQF 229 Query: 179 FVPEVKDIRTV 189 +VPEV+ + V Sbjct: 230 YVPEVEGVEQV 240 >gi|222147346|ref|YP_002548303.1| hypothetical protein Avi_0430 [Agrobacterium vitis S4] gi|221734336|gb|ACM35299.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 186 Score = 279 bits (715), Expect = 9e-74, Method: Composition-based stats. Identities = 107/189 (56%), Positives = 143/189 (75%), Gaps = 3/189 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VV+ G F + + A SPLA ++F+IPG+ SV+FGYDF Sbjct: 1 MFIQTESTPNPATLKFLPGKVVMDNGTAEFRDREAAMASPLAEKLFAIPGVTSVFFGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +TV KD +W HL+P +LG IMEHF+SG PI+ + GD D+ F E D +V Sbjct: 61 VTVTKDTAEWPHLKPAILGSIMEHFMSGAPIMGSAVAGDEASDE---EFFNEGDETIVAT 117 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+L+ RVRPAVA+DGGDI F+G+RDG VFL+M+G+C+GCPS++ TLK+GV N+L HF+ Sbjct: 118 IKELLETRVRPAVAQDGGDITFRGFRDGKVFLNMKGSCAGCPSSTATLKHGVQNLLRHFI 177 Query: 181 PEVKDIRTV 189 PEV+++ V Sbjct: 178 PEVQEVEAV 186 >gi|316931562|ref|YP_004106544.1| Scaffold protein Nfu/NifU [Rhodopseudomonas palustris DX-1] gi|315599276|gb|ADU41811.1| Scaffold protein Nfu/NifU [Rhodopseudomonas palustris DX-1] Length = 188 Score = 279 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 100/188 (53%), Positives = 141/188 (75%), Gaps = 2/188 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKFIPG+ VL G + F++A +A SPLA+R+F I G++ V++G DF Sbjct: 1 MFIQTEPTPNPATLKFIPGRSVLDSGTLEFTDAAQAARSPLAARLFDIDGVSGVFYGADF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +TV KD+ +W+HL+P +LG IMEH++SG PI+ D + E D+ V+ Sbjct: 61 VTVTKDRGEWQHLKPAILGAIMEHYMSGAPIL--ADGKSDGDDGDDDEFYAEGDAETVEI 118 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IK++++ RVRPAVA DGGDI F+G++DGIV+L+MRGAC+GCPS++ TL++G+ N+L HFV Sbjct: 119 IKDLIETRVRPAVANDGGDITFRGFKDGIVYLNMRGACAGCPSSTATLQHGIQNLLKHFV 178 Query: 181 PEVKDIRT 188 PEV ++R Sbjct: 179 PEVVEVRP 186 >gi|156548302|ref|XP_001602506.1| PREDICTED: similar to protein phosphatase 2a [Nasonia vitripennis] Length = 511 Score = 279 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 88/192 (45%), Positives = 118/192 (61%), Gaps = 10/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKFIPG VL +G F +A +A SPLA +F I G+ SV+FG D Sbjct: 67 MFIQTQDTPNPNSLKFIPGVEVLGKGQTKDFPSATDAFCSPLAKMLFRIEGVKSVFFGSD 126 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 FIT+ K + +W+ ++P + IM+ F SG PI E D + Sbjct: 127 FITITKIDEDVEWKLIKPEIFATIMDFFASGLPIFTEAQSSS-------DTVINEDDDEI 179 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 VQ IKE+LD R+RP V DGGDIVF G+ +GIV L M+G+C+ CPS+ TLK GV N++ Sbjct: 180 VQMIKELLDTRIRPTVQEDGGDIVFMGFENGIVKLKMQGSCTSCPSSVVTLKNGVQNMMQ 239 Query: 178 HFVPEVKDIRTV 189 ++PEV + V Sbjct: 240 FYIPEVLGVEQV 251 >gi|254453730|ref|ZP_05067167.1| NifU domain protein [Octadecabacter antarcticus 238] gi|198268136|gb|EDY92406.1| NifU domain protein [Octadecabacter antarcticus 238] Length = 186 Score = 279 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 97/190 (51%), Positives = 131/190 (68%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F + + A SPLA RIF + G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQNVLEVGTADFPSVEAAGKSPLAGRIFGVEGVTGVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV K D +W+H++P +LG +MEH+ SG ++ G G + D+ +V Sbjct: 61 ITVTKADDVEWDHIKPAILGAVMEHYQSGAAVMTGEQAGS------GHAEHTGEDADIVN 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 115 QIKELLDTRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 175 IPEVVEVRPV 184 >gi|170016007|ref|NP_001116180.1| NFU1 iron-sulfur cluster scaffold homolog, mitochondrial [Danio rerio] gi|169158109|emb|CAQ14737.1| HIRA interacting protein 5 [Danio rerio] Length = 243 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 122/191 (63%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKF+PG+ VL G + F+ ++A SPLA ++F I G+ SV+FG DF Sbjct: 51 MFIQTQDTPNPNSLKFLPGRAVLDSGTMDFAGPRDAFCSPLARQLFRIDGVKSVFFGPDF 110 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K + +W+ ++P V IM+ F SG P+I+ E D VV Sbjct: 111 ITITKTSGETEWKVIKPDVFATIMDFFTSGLPVINEADAPR------ADTAPSEDDDEVV 164 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++ G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 165 AMIKELLDTRIRPTVQEDGGDVLYHGFEDGIVKLKLQGSCTSCPSSIITLKNGIQNMLQF 224 Query: 179 FVPEVKDIRTV 189 +VPEV+ + V Sbjct: 225 YVPEVEGVEQV 235 >gi|37681825|gb|AAQ97790.1| HIRA interacting protein 5 [Danio rerio] gi|62205090|gb|AAH92670.1| HIRA interacting protein 5 [Danio rerio] gi|182891738|gb|AAI65097.1| Hirip5 protein [Danio rerio] Length = 243 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 84/191 (43%), Positives = 122/191 (63%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKF+PG+ VL G + F+ ++A SPLA ++F I G+ SV+FG DF Sbjct: 51 MFIQTQDTPNPNSLKFLPGRAVLDSGTMDFAGPRDAFCSPLARQLFRIDGVKSVFFGPDF 110 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K + +W+ ++P V IM+ F SG P+++ E D VV Sbjct: 111 ITITKTSGETEWKVIKPDVFATIMDFFTSGLPVVNEADAPR------ADTAPSEDDDEVV 164 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++ G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 165 AMIKELLDTRIRPTVQEDGGDVLYHGFEDGIVKLKLQGSCTSCPSSIITLKNGIQNMLQF 224 Query: 179 FVPEVKDIRTV 189 +VPEV+ + V Sbjct: 225 YVPEVEGVEQV 235 >gi|114769272|ref|ZP_01446898.1| nifU domain protein [alpha proteobacterium HTCC2255] gi|114550189|gb|EAU53070.1| nifU domain protein [alpha proteobacterium HTCC2255] Length = 186 Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 96/190 (50%), Positives = 133/190 (70%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ V+ G F + + SPLA RIF++ G +V+ G DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVMNMGTADFPSPQAGSSSPLAKRIFAVDGATAVFLGPDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +T+ K + DW+H++P +LG IMEHF SG P+I + + + G + DS +V Sbjct: 61 VTITKTEDADWDHIKPALLGAIMEHFQSGQPVI------EGEDNSGGHAEHTGEDSDIVN 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IK++LD RVRPAVA+DGGDI F G+ GIV+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 115 QIKDLLDTRVRPAVAQDGGDITFHGFERGIVYLHMQGACAGCPSSTITLKMGIENLLRHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 175 IPEVTEVRPV 184 >gi|225626680|ref|ZP_03784719.1| NifU-related protein [Brucella ceti str. Cudo] gi|254707168|ref|ZP_05168996.1| NifU-related protein [Brucella pinnipedialis M163/99/10] gi|254709289|ref|ZP_05171100.1| NifU-related protein [Brucella pinnipedialis B2/94] gi|254713288|ref|ZP_05175099.1| NifU-related protein [Brucella ceti M644/93/1] gi|254716359|ref|ZP_05178170.1| NifU-related protein [Brucella ceti M13/05/1] gi|256030812|ref|ZP_05444426.1| NifU-related protein [Brucella pinnipedialis M292/94/1] gi|256158837|ref|ZP_05456694.1| NifU-related protein [Brucella ceti M490/95/1] gi|256254218|ref|ZP_05459754.1| NifU-related protein [Brucella ceti B1/94] gi|260169716|ref|ZP_05756527.1| NifU-related protein [Brucella sp. F5/99] gi|261218142|ref|ZP_05932423.1| scaffold protein Nfu/NifU [Brucella ceti M13/05/1] gi|261221368|ref|ZP_05935649.1| scaffold protein Nfu/NifU [Brucella ceti B1/94] gi|261314644|ref|ZP_05953841.1| scaffold protein Nfu/NifU [Brucella pinnipedialis M163/99/10] gi|261316798|ref|ZP_05955995.1| scaffold protein Nfu/NifU [Brucella pinnipedialis B2/94] gi|261321011|ref|ZP_05960208.1| scaffold protein Nfu/NifU [Brucella ceti M644/93/1] gi|261759255|ref|ZP_06002964.1| nitrogen-fixing NifU [Brucella sp. F5/99] gi|265987868|ref|ZP_06100425.1| scaffold protein Nfu/NifU [Brucella pinnipedialis M292/94/1] gi|265997328|ref|ZP_06109885.1| scaffold protein Nfu/NifU [Brucella ceti M490/95/1] gi|225618337|gb|EEH15380.1| NifU-related protein [Brucella ceti str. Cudo] gi|260919952|gb|EEX86605.1| scaffold protein Nfu/NifU [Brucella ceti B1/94] gi|260923231|gb|EEX89799.1| scaffold protein Nfu/NifU [Brucella ceti M13/05/1] gi|261293701|gb|EEX97197.1| scaffold protein Nfu/NifU [Brucella ceti M644/93/1] gi|261296021|gb|EEX99517.1| scaffold protein Nfu/NifU [Brucella pinnipedialis B2/94] gi|261303670|gb|EEY07167.1| scaffold protein Nfu/NifU [Brucella pinnipedialis M163/99/10] gi|261739239|gb|EEY27235.1| nitrogen-fixing NifU [Brucella sp. F5/99] gi|262551796|gb|EEZ07786.1| scaffold protein Nfu/NifU [Brucella ceti M490/95/1] gi|264660065|gb|EEZ30326.1| scaffold protein Nfu/NifU [Brucella pinnipedialis M292/94/1] Length = 190 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 102/190 (53%), Positives = 140/190 (73%), Gaps = 1/190 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEI-SPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VV+ EG F + AE SPLA+++F++PG+ V+FGYD Sbjct: 1 MFIQTETTPNPATLKFLPGKVVMPEGTADFRDPASAENTSPLAAKLFAVPGVTGVFFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K+ +W+HL+P +LG IMEHF+SG P + D F E+D+ +V+ Sbjct: 61 FITVTKEDGEWQHLKPAILGTIMEHFMSGAPAMAGNANADAAAAHSEEEFFDEADTEIVE 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+++ RVRPAVA+DGGDI F+G+ +G VFL M+GACSGCPS++ TLK+G+ N+L HF Sbjct: 121 TIKELIETRVRPAVAQDGGDITFRGFENGTVFLHMKGACSGCPSSTATLKHGIQNLLRHF 180 Query: 180 VPEVKDIRTV 189 VPEV+ + + Sbjct: 181 VPEVQQVEQI 190 >gi|23501052|ref|NP_697179.1| NifU-like protein [Brucella suis 1330] gi|62289118|ref|YP_220911.1| NifU-like protein [Brucella abortus bv. 1 str. 9-941] gi|82699057|ref|YP_413631.1| nitrogen-fixing NifU, C-terminal [Brucella melitensis biovar Abortus 2308] gi|148560296|ref|YP_001258173.1| NifU-like protein [Brucella ovis ATCC 25840] gi|161618129|ref|YP_001592016.1| HIRA-interacting protein 5 [Brucella canis ATCC 23365] gi|189023393|ref|YP_001934161.1| Nitrogen-fixing NifU, C-terminal [Brucella abortus S19] gi|225851675|ref|YP_002731908.1| NifU-related protein [Brucella melitensis ATCC 23457] gi|237814609|ref|ZP_04593607.1| NifU-related protein [Brucella abortus str. 2308 A] gi|254690444|ref|ZP_05153698.1| NifU-related protein [Brucella abortus bv. 6 str. 870] gi|254694934|ref|ZP_05156762.1| NifU-related protein [Brucella abortus bv. 3 str. Tulya] gi|254696564|ref|ZP_05158392.1| NifU-related protein [Brucella abortus bv. 2 str. 86/8/59] gi|254700949|ref|ZP_05162777.1| NifU-related protein [Brucella suis bv. 5 str. 513] gi|254705318|ref|ZP_05167146.1| NifU-related protein [Brucella suis bv. 3 str. 686] gi|254718357|ref|ZP_05180168.1| NifU-related protein [Brucella sp. 83/13] gi|254731477|ref|ZP_05190055.1| NifU-related protein [Brucella abortus bv. 4 str. 292] gi|256060282|ref|ZP_05450455.1| NifU-related protein [Brucella neotomae 5K33] gi|256112644|ref|ZP_05453565.1| NifU-related protein [Brucella melitensis bv. 3 str. Ether] gi|256258700|ref|ZP_05464236.1| NifU-related protein [Brucella abortus bv. 9 str. C68] gi|256264815|ref|ZP_05467347.1| nitrogen-fixing NifU [Brucella melitensis bv. 2 str. 63/9] gi|256368604|ref|YP_003106110.1| NifU-related protein [Brucella microti CCM 4915] gi|260546415|ref|ZP_05822155.1| nitrogen-fixing NifU [Brucella abortus NCTC 8038] gi|260567221|ref|ZP_05837691.1| nitrogen-fixing NifU [Brucella suis bv. 4 str. 40] gi|260755996|ref|ZP_05868344.1| scaffold protein Nfu/NifU [Brucella abortus bv. 6 str. 870] gi|260759220|ref|ZP_05871568.1| scaffold protein Nfu/NifU [Brucella abortus bv. 4 str. 292] gi|260760942|ref|ZP_05873285.1| scaffold protein Nfu/NifU [Brucella abortus bv. 2 str. 86/8/59] gi|260885016|ref|ZP_05896630.1| scaffold protein Nfu/NifU [Brucella abortus bv. 9 str. C68] gi|261215272|ref|ZP_05929553.1| scaffold protein Nfu/NifU [Brucella abortus bv. 3 str. Tulya] gi|261324254|ref|ZP_05963451.1| scaffold protein Nfu/NifU [Brucella neotomae 5K33] gi|261751468|ref|ZP_05995177.1| scaffold protein Nfu/NifU [Brucella suis bv. 5 str. 513] gi|261756030|ref|ZP_05999739.1| scaffold protein Nfu/NifU [Brucella suis bv. 3 str. 686] gi|265983318|ref|ZP_06096053.1| scaffold protein Nfu/NifU [Brucella sp. 83/13] gi|265994085|ref|ZP_06106642.1| scaffold protein Nfu/NifU [Brucella melitensis bv. 3 str. Ether] gi|297247534|ref|ZP_06931252.1| thioredoxin-like protein [Brucella abortus bv. 5 str. B3196] gi|306839588|ref|ZP_07472392.1| NifU-related protein [Brucella sp. NF 2653] gi|306842572|ref|ZP_07475223.1| NifU-related protein [Brucella sp. BO2] gi|306844409|ref|ZP_07476999.1| NifU-related protein [Brucella sp. BO1] gi|23346918|gb|AAN29094.1| NifU-related protein [Brucella suis 1330] gi|62195250|gb|AAX73550.1| NifU-related protein [Brucella abortus bv. 1 str. 9-941] gi|82615158|emb|CAJ10095.1| Nitrogen-fixing NifU, C-terminal [Brucella melitensis biovar Abortus 2308] gi|148371553|gb|ABQ61532.1| NifU-related protein [Brucella ovis ATCC 25840] gi|161334940|gb|ABX61245.1| HIRA-interacting protein 5 [Brucella canis ATCC 23365] gi|189018965|gb|ACD71687.1| Nitrogen-fixing NifU, C-terminal [Brucella abortus S19] gi|225640040|gb|ACN99953.1| NifU-related protein [Brucella melitensis ATCC 23457] gi|237789446|gb|EEP63656.1| NifU-related protein [Brucella abortus str. 2308 A] gi|255998762|gb|ACU47161.1| NifU-related protein [Brucella microti CCM 4915] gi|260096522|gb|EEW80398.1| nitrogen-fixing NifU [Brucella abortus NCTC 8038] gi|260156739|gb|EEW91819.1| nitrogen-fixing NifU [Brucella suis bv. 4 str. 40] gi|260669538|gb|EEX56478.1| scaffold protein Nfu/NifU [Brucella abortus bv. 4 str. 292] gi|260671374|gb|EEX58195.1| scaffold protein Nfu/NifU [Brucella abortus bv. 2 str. 86/8/59] gi|260676104|gb|EEX62925.1| scaffold protein Nfu/NifU [Brucella abortus bv. 6 str. 870] gi|260874544|gb|EEX81613.1| scaffold protein Nfu/NifU [Brucella abortus bv. 9 str. C68] gi|260916879|gb|EEX83740.1| scaffold protein Nfu/NifU [Brucella abortus bv. 3 str. Tulya] gi|261300234|gb|EEY03731.1| scaffold protein Nfu/NifU [Brucella neotomae 5K33] gi|261741221|gb|EEY29147.1| scaffold protein Nfu/NifU [Brucella suis bv. 5 str. 513] gi|261745783|gb|EEY33709.1| scaffold protein Nfu/NifU [Brucella suis bv. 3 str. 686] gi|262765066|gb|EEZ10987.1| scaffold protein Nfu/NifU [Brucella melitensis bv. 3 str. Ether] gi|263095225|gb|EEZ18894.1| nitrogen-fixing NifU [Brucella melitensis bv. 2 str. 63/9] gi|264661910|gb|EEZ32171.1| scaffold protein Nfu/NifU [Brucella sp. 83/13] gi|297174703|gb|EFH34050.1| thioredoxin-like protein [Brucella abortus bv. 5 str. B3196] gi|306275222|gb|EFM56972.1| NifU-related protein [Brucella sp. BO1] gi|306287428|gb|EFM58908.1| NifU-related protein [Brucella sp. BO2] gi|306405286|gb|EFM61561.1| NifU-related protein [Brucella sp. NF 2653] gi|326408161|gb|ADZ65226.1| Nitrogen-fixing NifU, C-terminal protein [Brucella melitensis M28] gi|326537871|gb|ADZ86086.1| NifU-related protein [Brucella melitensis M5-90] Length = 190 Score = 278 bits (711), Expect = 3e-73, Method: Composition-based stats. Identities = 102/190 (53%), Positives = 140/190 (73%), Gaps = 1/190 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEI-SPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VV+ EG F + AE SPLA+++F++PG+ V+FGYD Sbjct: 1 MFIQTETTPNPATLKFLPGKVVMPEGTADFRDPASAENTSPLAAKLFAVPGVTGVFFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K+ +W+HL+P +LG IMEHF+SG P + D F E+D+ +V+ Sbjct: 61 FITVTKEDGEWQHLKPAILGTIMEHFMSGAPAMAGNANADAAAAHGEEEFFDEADTEIVE 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+++ RVRPAVA+DGGDI F+G+ +G VFL M+GACSGCPS++ TLK+G+ N+L HF Sbjct: 121 TIKELIETRVRPAVAQDGGDITFRGFENGTVFLHMKGACSGCPSSTATLKHGIQNLLRHF 180 Query: 180 VPEVKDIRTV 189 VPEV+ + + Sbjct: 181 VPEVQQVEQI 190 >gi|90421987|ref|YP_530357.1| nitrogen-fixing NifU-like [Rhodopseudomonas palustris BisB18] gi|90104001|gb|ABD86038.1| nitrogen-fixing NifU-like [Rhodopseudomonas palustris BisB18] Length = 188 Score = 278 bits (711), Expect = 3e-73, Method: Composition-based stats. Identities = 101/189 (53%), Positives = 141/189 (74%), Gaps = 1/189 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKFIPG+VVL G + F++ A SPLA RIF +PG+ V++G DF Sbjct: 1 MFIQTEPTPNPATLKFIPGRVVLDSGTMEFNDRATAARSPLAERIFEVPGVTGVFYGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +TV KD DW+HL+P +LG IMEH++SG+P++ +G + D F ++D+ V Sbjct: 61 VTVTKDDSDWQHLKPSILGAIMEHYMSGEPLMADGRV-DGDEPSEDDEFFDKADAETVDM 119 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IK++++ RVRPAVA DGGDI F+G++DGIV+L M+GACSGCPS++ TL++G+ N+L HFV Sbjct: 120 IKDLIETRVRPAVANDGGDITFRGFKDGIVYLKMQGACSGCPSSTATLQHGIQNLLKHFV 179 Query: 181 PEVKDIRTV 189 P V ++R + Sbjct: 180 PAVVEVRPI 188 >gi|126734863|ref|ZP_01750609.1| NifU-like domain protein [Roseobacter sp. CCS2] gi|126715418|gb|EBA12283.1| NifU-like domain protein [Roseobacter sp. CCS2] Length = 187 Score = 278 bits (711), Expect = 3e-73, Method: Composition-based stats. Identities = 99/190 (52%), Positives = 131/190 (68%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ AE SPLA RIF G+ V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQNVLEVGTADFPSAEAAENSPLAKRIFDAGGVTGVFFGIDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+H++P +LG IMEH+ SG ++ + G + D +V Sbjct: 61 VTVTKADDVEWDHIKPGILGAIMEHYQSGQSVM-----AEDHKPVSGHAEHTGEDGEIVG 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ GIV+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDTRVRPAVAQDGGDITFHGFERGIVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVVEVRPV 185 >gi|163868796|ref|YP_001610020.1| NifU-related protein [Bartonella tribocorum CIP 105476] gi|161018467|emb|CAK02025.1| NifU-related protein [Bartonella tribocorum CIP 105476] Length = 192 Score = 277 bits (710), Expect = 4e-73, Method: Composition-based stats. Identities = 99/189 (52%), Positives = 139/189 (73%), Gaps = 1/189 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VVL EG + F + +EA + SPLA+++F+IP + V+ GYD Sbjct: 1 MFIQTETTPNPATLKFLPGRVVLSEGVLEFRDREEAAKNSPLAAKLFNIPNVNGVFLGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K + +W+HL+P +LG IMEHF+S +P+I + + E D+ +V Sbjct: 61 FITVSKKEGEWQHLKPVILGTIMEHFLSNEPVITTNATTQAHAHALNEEFYDEKDADIVL 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ R+RPAVA DGGDI F+G+ +GIV+L+MRGAC+GCPS++ TLK+G+ N+L HF Sbjct: 121 TIKELLETRIRPAVANDGGDITFRGFENGIVYLNMRGACAGCPSSTATLKHGIENLLRHF 180 Query: 180 VPEVKDIRT 188 +PEV + Sbjct: 181 IPEVLGVEA 189 >gi|115522240|ref|YP_779151.1| NifU domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115516187|gb|ABJ04171.1| nitrogen-fixing NifU domain protein [Rhodopseudomonas palustris BisA53] Length = 188 Score = 277 bits (710), Expect = 4e-73, Method: Composition-based stats. Identities = 101/189 (53%), Positives = 143/189 (75%), Gaps = 1/189 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ VL G + FS+ A SPLA R+F +PG+ V++G DF Sbjct: 1 MFIQTEPTPNPATLKFLPGRAVLDSGTMEFSDRAAAARSPLAERLFEVPGVTGVFYGLDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ++V KD DW+HL+P +LG IMEHF+SG+P++ +G + D + F ++D+ V Sbjct: 61 VSVTKDDGDWQHLKPAILGAIMEHFMSGEPLMADGRV-DGEDASEDDEFFEKADTETVVI 119 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IK++++ RVRPAVA DGGDI+F+G++DGIV+L MRGACSGCPS++ TL++G+ N+L HFV Sbjct: 120 IKDLIETRVRPAVANDGGDIIFRGFKDGIVYLHMRGACSGCPSSTATLQHGIQNLLKHFV 179 Query: 181 PEVKDIRTV 189 PEV ++R + Sbjct: 180 PEVVEVRPI 188 >gi|209484091|gb|ACI47520.1| iron-sulfer cluster scaffold protein NFU4 [Eucalyptus grandis] Length = 243 Score = 277 bits (710), Expect = 5e-73, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 116/191 (60%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +L F PG+ V+ G+ F NA+ + S LA +F I G+ V++G DF Sbjct: 40 MFIQTQSTPNPMSLMFYPGKPVMEVGSADFPNARTSMNSALARALFGIDGVTRVFYGSDF 99 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D W+ L+P + IM+ + SG P+ + E DS V Sbjct: 100 VTVTKSDDASWDLLKPEIFAAIMDFYSSGQPLFLDSQTASA-----MDTAIHEDDSETVA 154 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 155 MIKELLETRIRPAVQDDGGDIEYRGFDLDTGIVKLRMQGACSGCPSSSVTLKSGIENMLM 214 Query: 178 HFVPEVKDIRT 188 H+VPEVK + Sbjct: 215 HYVPEVKAVEQ 225 >gi|218461569|ref|ZP_03501660.1| Scaffold protein Nfu/NifU [Rhizobium etli Kim 5] Length = 188 Score = 277 bits (709), Expect = 5e-73, Method: Composition-based stats. Identities = 106/188 (56%), Positives = 145/188 (77%), Gaps = 1/188 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPAT KF+PG+VV+ G F +A+EA+ SPLA+R+F IPG+ VYFGYDF Sbjct: 1 MFIQTEATPNPATQKFLPGKVVMENGTAEFRSAEEAQASPLAARLFEIPGVTGVYFGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 I+V KD +W+HL+P +LG IMEHF+SG P++ + + + D G F E D ++V Sbjct: 61 ISVSKDDAEWQHLKPAILGSIMEHFMSGKPVMGDASILS-EDADAGDEFFDEGDESIVLT 119 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+L+ RVRPAVA+DGGDI F+G++DG V+L+M+G+CSGCPS++ TLK+GV N+L HFV Sbjct: 120 IKELLETRVRPAVAQDGGDITFRGFKDGKVYLNMKGSCSGCPSSTATLKHGVQNLLRHFV 179 Query: 181 PEVKDIRT 188 PEV+++ Sbjct: 180 PEVQEVIA 187 >gi|163842411|ref|YP_001626815.1| HIRA-interacting protein 5 [Brucella suis ATCC 23445] gi|163673134|gb|ABY37245.1| HIRA-interacting protein 5 [Brucella suis ATCC 23445] Length = 190 Score = 277 bits (709), Expect = 5e-73, Method: Composition-based stats. Identities = 102/190 (53%), Positives = 140/190 (73%), Gaps = 1/190 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEI-SPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VV+ EG F + AE SPLA+++F++PG+ V+FGYD Sbjct: 1 MFIQTETTPNPATLKFLPGKVVMPEGTADFRDPPSAENTSPLAAKLFAVPGVTGVFFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K+ +W+HL+P +LG IMEHF+SG P + D F E+D+ +V+ Sbjct: 61 FITVTKEHGEWQHLKPAILGTIMEHFMSGAPAMAGNANADAAAAHGEEEFFDEADTEIVE 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+++ RVRPAVA+DGGDI F+G+ +G VFL M+GACSGCPS++ TLK+G+ N+L HF Sbjct: 121 TIKELIETRVRPAVAQDGGDITFRGFENGTVFLHMKGACSGCPSSTATLKHGIQNLLRHF 180 Query: 180 VPEVKDIRTV 189 VPEV+ + + Sbjct: 181 VPEVQQVEQI 190 >gi|225717260|gb|ACO14476.1| NFU1 iron-sulfur cluster scaffold homolog [Esox lucius] Length = 253 Score = 277 bits (709), Expect = 5e-73, Method: Composition-based stats. Identities = 81/191 (42%), Positives = 120/191 (62%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKF+PG +VL G + F+ +EA PLA ++F I G+ V+ G DF Sbjct: 59 MFIQTQDTPNPNSLKFLPGCMVLERGTMDFAAPREAYCCPLARQLFGIDGVKGVFLGPDF 118 Query: 61 ITVGKDQYD--WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K D W+ ++P V IM+ F SG P+++ + + D V+ Sbjct: 119 ITITKANVDLEWKLIKPDVFAAIMDFFASGLPVMNE------EDTPRADTAPSDDDDEVI 172 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++++G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 173 TMIKELLDTRIRPTVQEDGGDVLYRGFEDGIVKLKLQGSCTSCPSSIVTLKSGIQNMLQF 232 Query: 179 FVPEVKDIRTV 189 +VPEV+ + V Sbjct: 233 YVPEVEGVEQV 243 >gi|17988091|ref|NP_540725.1| NifU protein [Brucella melitensis bv. 1 str. 16M] gi|256045931|ref|ZP_05448803.1| NifU protein [Brucella melitensis bv. 1 str. Rev.1] gi|260563213|ref|ZP_05833699.1| nitrogen-fixing NifU [Brucella melitensis bv. 1 str. 16M] gi|265992342|ref|ZP_06104899.1| scaffold protein Nfu/NifU [Brucella melitensis bv. 1 str. Rev.1] gi|17983843|gb|AAL52989.1| nifu protein [Brucella melitensis bv. 1 str. 16M] gi|260153229|gb|EEW88321.1| nitrogen-fixing NifU [Brucella melitensis bv. 1 str. 16M] gi|263003408|gb|EEZ15701.1| scaffold protein Nfu/NifU [Brucella melitensis bv. 1 str. Rev.1] Length = 190 Score = 277 bits (709), Expect = 6e-73, Method: Composition-based stats. Identities = 103/190 (54%), Positives = 140/190 (73%), Gaps = 1/190 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEI-SPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VV+ EG F + AE SPLA+++F++PG+ V+FGYD Sbjct: 1 MFIQTETTPNPATLKFLPGKVVMPEGTADFRDPASAENTSPLAAKLFAVPGVTGVFFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K+ +W+HL+P +LG IMEHF+SG P + D F E+D+ +V+ Sbjct: 61 FITVTKEDGEWQHLKPAILGTIMEHFMSGAPAMAGNANADAAAAHGEEEFFDEADTEIVE 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+++ RVRPAVA+DGGDI F+G+ +G VFL M+GACSGCPS++ TLK+GV N+L HF Sbjct: 121 TIKELIETRVRPAVAQDGGDITFRGFENGTVFLHMKGACSGCPSSTATLKHGVQNLLRHF 180 Query: 180 VPEVKDIRTV 189 VPEV+ + + Sbjct: 181 VPEVQQVEQI 190 >gi|125550903|gb|EAY96612.1| hypothetical protein OsI_18522 [Oryza sativa Indica Group] Length = 272 Score = 277 bits (709), Expect = 6e-73, Method: Composition-based stats. Identities = 87/191 (45%), Positives = 120/191 (62%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +L F PG+ V+ G+ F NA+ A SPLA +F+I G+ V+FG DF Sbjct: 72 MFIQTQSTPNPQSLMFYPGKPVMEVGSSDFPNARTAMTSPLAKALFAIDGVTRVFFGSDF 131 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K ++ W++L+P V IM+ + SG + + E DS +V Sbjct: 132 VTVTKSEETSWDYLKPEVFAAIMDFYSSGQSLFLDSSTA-----ASMDTAIHEDDSEIVA 186 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 187 MIKELLETRIRPAVQDDGGDIEYRGFDPETGIVKLKMQGACSGCPSSSVTLKSGIENMLM 246 Query: 178 HFVPEVKDIRT 188 H+VPEVK + Sbjct: 247 HYVPEVKGVEQ 257 >gi|294851540|ref|ZP_06792213.1| thioredoxin-like protein [Brucella sp. NVSL 07-0026] gi|294820129|gb|EFG37128.1| thioredoxin-like protein [Brucella sp. NVSL 07-0026] Length = 190 Score = 277 bits (709), Expect = 6e-73, Method: Composition-based stats. Identities = 102/190 (53%), Positives = 139/190 (73%), Gaps = 1/190 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEI-SPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VV+ EG F + AE SPLA+++F +PG+ V+FGYD Sbjct: 1 MFIQTETTPNPATLKFLPGKVVMPEGTADFRDPASAENTSPLAAKLFVVPGVTGVFFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K+ +W+HL+P +LG IMEHF+SG P + D F E+D+ +V+ Sbjct: 61 FITVTKEDGEWQHLKPAILGTIMEHFMSGAPAMAGNANADAAAAHGEEEFFDEADTEIVE 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+++ RVRPAVA+DGGDI F+G+ +G VFL M+GACSGCPS++ TLK+G+ N+L HF Sbjct: 121 TIKELIETRVRPAVAQDGGDITFRGFENGTVFLHMKGACSGCPSSTATLKHGIQNLLRHF 180 Query: 180 VPEVKDIRTV 189 VPEV+ + + Sbjct: 181 VPEVQQVEQI 190 >gi|158426327|ref|YP_001527619.1| nitrogen-fixing protein [Azorhizobium caulinodans ORS 571] gi|158333216|dbj|BAF90701.1| nitrogen-fixing protein [Azorhizobium caulinodans ORS 571] Length = 186 Score = 277 bits (709), Expect = 6e-73, Method: Composition-based stats. Identities = 99/189 (52%), Positives = 136/189 (71%), Gaps = 3/189 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ VL +G + + EA SPL R+F + G+ V+ G DF Sbjct: 1 MFIQTEATPNPATLKFLPGRTVLGDGTLEARSPAEAGRSPLVQRLFEVKGVGGVFLGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +TV K DW H++P +LG IMEHF+SG P++ +G D + G F E+D +V Sbjct: 61 VTVTKTDGDWAHMKPAILGAIMEHFMSGAPVLADGVAAD---QEDGEEFFNEADEEIVGT 117 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+++ RVRPAVA DGGDI F+G+R+G+V+L+M+G+CSGCPS++ TLK G+ N+L HFV Sbjct: 118 IKELIETRVRPAVAADGGDITFRGFREGVVYLNMKGSCSGCPSSTATLKNGIENLLRHFV 177 Query: 181 PEVKDIRTV 189 PEV ++R V Sbjct: 178 PEVNEVRPV 186 >gi|89053356|ref|YP_508807.1| nitrogen-fixing NifU-like [Jannaschia sp. CCS1] gi|88862905|gb|ABD53782.1| nitrogen-fixing NifU-like protein [Jannaschia sp. CCS1] Length = 187 Score = 277 bits (708), Expect = 8e-73, Method: Composition-based stats. Identities = 102/190 (53%), Positives = 135/190 (71%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F A+ +E SPLASRIF++ G+ V+FG DF Sbjct: 1 MFIQTEATPNPATLKFLPGQSVLEVGTADFPTAETSEKSPLASRIFAVEGVTGVFFGIDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D DW+H++P +LG IMEH+ SGDP++ GD G + D +V Sbjct: 61 VTVTKADAVDWDHVKPAILGAIMEHYQSGDPVM-----GDGHEVSSGHAEHTGEDGEIVG 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IK +LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKSLLDTRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVVEVRPV 185 >gi|115462181|ref|NP_001054690.1| Os05g0155300 [Oryza sativa Japonica Group] gi|54291852|gb|AAV32220.1| unknown protein [Oryza sativa Japonica Group] gi|113578241|dbj|BAF16604.1| Os05g0155300 [Oryza sativa Japonica Group] gi|215697325|dbj|BAG91319.1| unnamed protein product [Oryza sativa Japonica Group] gi|222630253|gb|EEE62385.1| hypothetical protein OsJ_17174 [Oryza sativa Japonica Group] Length = 272 Score = 276 bits (707), Expect = 9e-73, Method: Composition-based stats. Identities = 87/191 (45%), Positives = 121/191 (63%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +L F PG+ V+ G+ F NA+ A SPLA +F+I G+ V+FG DF Sbjct: 72 MFIQTQSTPNPQSLMFYPGKPVMEVGSSDFPNARTAMTSPLAKALFAIDGVTRVFFGSDF 131 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K ++ W++L+P V +IM+ + SG + + E DS +V Sbjct: 132 VTVTKSEETSWDYLKPEVFAVIMDFYSSGQSLFLDSSTA-----ASMDTAIHEDDSEIVA 186 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 187 MIKELLETRIRPAVQDDGGDIEYRGFDPETGIVKLKMQGACSGCPSSSVTLKSGIENMLM 246 Query: 178 HFVPEVKDIRT 188 H+VPEVK + Sbjct: 247 HYVPEVKGVEQ 257 >gi|190890051|ref|YP_001976593.1| nitrogen fixation protein [Rhizobium etli CIAT 652] gi|218509253|ref|ZP_03507131.1| nitrogen fixation protein [Rhizobium etli Brasil 5] gi|190695330|gb|ACE89415.1| nitrogen fixation protein [Rhizobium etli CIAT 652] Length = 188 Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats. Identities = 107/188 (56%), Positives = 144/188 (76%), Gaps = 1/188 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPAT KF+PG+VV+ G F +A EAE SPLA+R+F IPG+ VYFGYDF Sbjct: 1 MFIQTEATPNPATQKFLPGKVVMENGTAEFRSAAEAEASPLAARLFEIPGVTGVYFGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 I+V KD +W+HL+P +LG IMEHF+SG P++ + + + D G F E D ++V Sbjct: 61 ISVSKDNAEWQHLKPAILGSIMEHFMSGKPVMGDASILS-EDADAGDEFFDEGDESIVLT 119 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+L+ RVRPAVA+DGGDI F+G++DG V+L+M+G+CSGCPS++ TLK+GV N+L HFV Sbjct: 120 IKELLETRVRPAVAQDGGDITFRGFKDGKVYLNMKGSCSGCPSSTATLKHGVQNLLRHFV 179 Query: 181 PEVKDIRT 188 PEV+++ Sbjct: 180 PEVQEVIA 187 >gi|224110188|ref|XP_002315442.1| predicted protein [Populus trichocarpa] gi|222864482|gb|EEF01613.1| predicted protein [Populus trichocarpa] Length = 279 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 91/191 (47%), Positives = 121/191 (63%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP++L F PG+ V+ G+ F NA+ A SPLA I+ I GI V+FG DF Sbjct: 78 MFIQTQSTPNPSSLMFYPGKPVMDVGSADFPNARSAMNSPLAKAIYGIDGINRVFFGPDF 137 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 IT+ K D WE L+P + IM+ + SG+P+ + K E DS V Sbjct: 138 ITITKSDDATWEFLKPEIFAAIMDFYSSGEPLFLDSQTAAAK-----DTAISEDDSETVA 192 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ + GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 193 MIKELLETRIRPAVQDDGGDIEYQGFDEETGIVKLKMQGACSGCPSSSVTLKSGIENMLM 252 Query: 178 HFVPEVKDIRT 188 H+VPEVK + Sbjct: 253 HYVPEVKGVEQ 263 >gi|148666782|gb|EDK99198.1| mCG130855, isoform CRA_b [Mus musculus] Length = 256 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 119/191 (62%), Gaps = 7/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 57 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 116 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ G E D VV Sbjct: 117 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETP-----PPPGEAGSSEEDDEVV 171 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++++G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 172 AMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF 231 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 232 YIPEVEGVEQV 242 >gi|239047306|ref|NP_001131382.2| hypothetical protein LOC100192708 [Zea mays] gi|238908578|gb|ACF79773.2| unknown [Zea mays] Length = 268 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 87/191 (45%), Positives = 118/191 (61%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +L F PG+ V+ G+ F NA+ A SPLA F+I G+ V+FG DF Sbjct: 71 MFIQTQSTPNPQSLMFYPGKPVMEIGSSDFPNARTAMTSPLAKSPFAIDGVTRVFFGSDF 130 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K ++ W+ L+P V IM+ + SG P+ + E DS +V Sbjct: 131 VTVTKSEETSWDCLKPEVFAAIMDFYSSGQPLFLDSNAA-----ASMDTAIHEDDSEIVA 185 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ G V L M+GACSGCPS+S TLK G+ N+L Sbjct: 186 MIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLKMQGACSGCPSSSVTLKSGIENMLM 245 Query: 178 HFVPEVKDIRT 188 H+VPEVK + Sbjct: 246 HYVPEVKGVEQ 256 >gi|218678782|ref|ZP_03526679.1| nitrogen fixation protein [Rhizobium etli CIAT 894] Length = 188 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 106/188 (56%), Positives = 145/188 (77%), Gaps = 1/188 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPAT KF+PG+VV+ G F +A+EAE SPLA+R+F IPG+ VYFGYDF Sbjct: 1 MFIQTEATPNPATQKFLPGKVVMENGTAEFRSAEEAEASPLAARLFEIPGVTGVYFGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 I+V KD +W+HL+P +LG IMEHF+SG P++ + + + D G F E D ++V Sbjct: 61 ISVSKDNAEWQHLKPAILGSIMEHFMSGKPVMGDASILS-EDADAGDEFFDEGDESIVLT 119 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+L+ RVRPAVA+DGGDI F+G++DG V+L+M+G+C+GCPS++ TLK+GV N+L HFV Sbjct: 120 IKELLETRVRPAVAQDGGDITFRGFKDGKVYLNMKGSCAGCPSSTATLKHGVQNLLRHFV 179 Query: 181 PEVKDIRT 188 PEV+++ Sbjct: 180 PEVQEVIA 187 >gi|86356038|ref|YP_467930.1| nitrogen fixation protein [Rhizobium etli CFN 42] gi|86280140|gb|ABC89203.1| nitrogen fixation protein [Rhizobium etli CFN 42] Length = 188 Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats. Identities = 107/188 (56%), Positives = 145/188 (77%), Gaps = 1/188 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPAT KF+PG+VV+ G F +A+EAE SPLA+R+F IPG+ VYFGYDF Sbjct: 1 MFIQTEATPNPATQKFLPGKVVMENGTAEFRSAEEAEASPLAARLFDIPGVTGVYFGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 I+V KD +W+HL+P +LG IMEHF+SG P++ + + +D G F E D ++V Sbjct: 61 ISVSKDNAEWQHLKPAILGSIMEHFMSGKPVMGDASILSEDVDA-GDEFFDEGDESIVLT 119 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+L+ RVRPAVA+DGGDI F+G++DG V+L+M+G+CSGCPS++ TLK+GV N+L HFV Sbjct: 120 IKELLETRVRPAVAQDGGDITFRGFKDGKVYLNMKGSCSGCPSSTATLKHGVQNLLRHFV 179 Query: 181 PEVKDIRT 188 PEV+++ Sbjct: 180 PEVQEVIA 187 >gi|300024980|ref|YP_003757591.1| Scaffold protein Nfu/NifU [Hyphomicrobium denitrificans ATCC 51888] gi|299526801|gb|ADJ25270.1| Scaffold protein Nfu/NifU [Hyphomicrobium denitrificans ATCC 51888] Length = 184 Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats. Identities = 102/189 (53%), Positives = 131/189 (69%), Gaps = 5/189 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKFIPG+ VL G F EA SPLA+R+F+I G+ V+ G DF Sbjct: 1 MFIQTEATPNPATLKFIPGRDVLAGGTADFRTRNEAVASPLATRLFAIDGVDGVFLGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 I+V K +W+HL+P VLG IMEH++SG P+ + +D G+ + D A V Sbjct: 61 ISVTKGNVEWQHLKPMVLGAIMEHYMSGAPV-----SDEEDSNDEGAESYDPEDEATVTT 115 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+L+ RVRPAVA+DGGDI F G+RDG+V+L MRGACSGCPS++ TL+ G+ N+L HF Sbjct: 116 IKELLETRVRPAVAQDGGDITFSGFRDGVVYLHMRGACSGCPSSTATLRNGIENLLKHFC 175 Query: 181 PEVKDIRTV 189 PEV + V Sbjct: 176 PEVTSVEAV 184 >gi|114577887|ref|XP_001137189.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] Length = 248 Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 118/191 (61%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 59 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 118 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ E D VV Sbjct: 119 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAG--------SEEDDEVV 170 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 171 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 230 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 231 YIPEVEGVEQV 241 >gi|294678745|ref|YP_003579360.1| NifU domain-containing protein [Rhodobacter capsulatus SB 1003] gi|294477565|gb|ADE86953.1| NifU domain protein [Rhodobacter capsulatus SB 1003] Length = 188 Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats. Identities = 97/190 (51%), Positives = 135/190 (71%), Gaps = 5/190 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG V+ EG F++ + A++SPLA RIF + G+ +V+ G DF Sbjct: 1 MFIQTETTPNPATLKFLPGLDVMPEGVADFTSVEAAQVSPLAGRIFRVAGVKAVFLGADF 60 Query: 61 ITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV KD+ +W H RP ++G IMEH+ SG P++ G +G+ D A++ Sbjct: 61 VTVTKDEATEWAHARPAIMGAIMEHYQSGQPVLMGAAAGGHTTGGADTGE----DGAIIS 116 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVARDGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 117 QIKELLDTRVRPAVARDGGDITFHGFEKGVVYLHMQGACAGCPSSTYTLKMGIENLLRHY 176 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 177 IPEVSEVRAV 186 >gi|282154803|ref|NP_001164062.1| NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 1 precursor [Mus musculus] gi|74211556|dbj|BAE26508.1| unnamed protein product [Mus musculus] Length = 256 Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 119/191 (62%), Gaps = 7/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 57 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 116 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ G E D VV Sbjct: 117 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETP-----PPPGEAGSSEEDDEVV 171 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++++G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 172 AMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF 231 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 232 YIPEVEGVEQV 242 >gi|154245767|ref|YP_001416725.1| scaffold protein Nfu/NifU [Xanthobacter autotrophicus Py2] gi|154159852|gb|ABS67068.1| Scaffold protein Nfu/NifU [Xanthobacter autotrophicus Py2] Length = 186 Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats. Identities = 99/189 (52%), Positives = 140/189 (74%), Gaps = 3/189 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ VL EG + + +A++SPLA R+F + G+A+V+ G DF Sbjct: 1 MFIQTETTPNPATLKFLPGRSVLGEGTLDLRSHDDADLSPLAQRLFDVRGVAAVFLGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +TV K + +W ++P +LG IMEHF+SG P++ +G ++ D + D+ +V Sbjct: 61 VTVTKAEAEWPQIKPAILGAIMEHFMSGAPVLSDGVKPEVADAD---EFYEAKDAEIVAT 117 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+LD RVRPAVA DGGDI F+G++DGIVFL+M+G+CSGCPS++ TLK G+ N+L HFV Sbjct: 118 IKELLDTRVRPAVANDGGDITFRGFKDGIVFLNMKGSCSGCPSSTATLKNGIENLLKHFV 177 Query: 181 PEVKDIRTV 189 PEV +++ V Sbjct: 178 PEVTEVQAV 186 >gi|15887702|ref|NP_353383.1| hypothetical protein Atu0351 [Agrobacterium tumefaciens str. C58] gi|15155261|gb|AAK86168.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 187 Score = 275 bits (703), Expect = 3e-72, Method: Composition-based stats. Identities = 109/189 (57%), Positives = 144/189 (76%), Gaps = 2/189 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VVL G + F NA +A+ SPLA R+F+IPG+ VYFG+DF Sbjct: 1 MFIQTEATPNPATLKFLPGKVVLESGTVEFLNASQAQASPLAERLFTIPGVTGVYFGFDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ITV KD +W+HL+P +LG IMEHF+SG PI+ ++ ++ + + +V Sbjct: 61 ITVTKDDAEWQHLKPAILGSIMEHFMSGRPIMGTAIAAEVSDEEGEFFEEGD--ETIVAT 118 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+LD RVRPAVA+DGGDI F+G+RDG VFL+M+GACSGCPS++ TLK+GV N+L HFV Sbjct: 119 IKELLDTRVRPAVAQDGGDITFRGFRDGTVFLNMKGACSGCPSSTATLKHGVQNLLRHFV 178 Query: 181 PEVKDIRTV 189 PEV+++ V Sbjct: 179 PEVREVEAV 187 >gi|209547636|ref|YP_002279553.1| Scaffold protein Nfu/NifU [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533392|gb|ACI53327.1| Scaffold protein Nfu/NifU [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 188 Score = 275 bits (703), Expect = 3e-72, Method: Composition-based stats. Identities = 106/188 (56%), Positives = 145/188 (77%), Gaps = 1/188 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPAT KF+PG+VV+ G F +A+EAE SPLA+R+F IPG+ VYFGYDF Sbjct: 1 MFIQTEATPNPATQKFLPGKVVMENGTAEFRSAEEAEASPLAARLFEIPGVTGVYFGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 I+V KD +W+HL+P +LG IMEHF+SG P++ + + +D G F E D ++V Sbjct: 61 ISVSKDDAEWQHLKPAILGSIMEHFMSGKPVMGDASILSEDVDA-GDEFFDEGDESIVLT 119 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+L+ RVRPAVA+DGGDI F+G++DG V+L+M+G+C+GCPS++ TLK+GV N+L HFV Sbjct: 120 IKELLETRVRPAVAQDGGDITFRGFKDGKVYLNMKGSCAGCPSSTATLKHGVQNLLRHFV 179 Query: 181 PEVKDIRT 188 PEV+++ Sbjct: 180 PEVQEVIA 187 >gi|114053059|ref|NP_001040031.1| NFU1 iron-sulfur cluster scaffold homolog, mitochondrial [Bos taurus] gi|86823819|gb|AAI05370.1| NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) [Bos taurus] gi|296482427|gb|DAA24542.1| HIRA interacting protein 5 [Bos taurus] Length = 253 Score = 275 bits (703), Expect = 3e-72, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 118/191 (61%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 58 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPATAFRSPLARQLFRIEGVKSVFFGPDF 117 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ E D VV Sbjct: 118 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAG--------SEDDDEVV 169 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 170 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 229 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 230 YIPEVEGVEQV 240 >gi|149727512|ref|XP_001491099.1| PREDICTED: similar to HIRA interacting protein 5 isoform 1 [Equus caballus] Length = 253 Score = 274 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 118/191 (61%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 58 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 117 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ E D VV Sbjct: 118 ITVTKESEELDWNLLKPDIYATIMDFFASGLPLVTEETSSGEAG--------SEEDDEVV 169 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 170 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 229 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 230 YIPEVEGVEQV 240 >gi|91089707|ref|XP_974909.1| PREDICTED: similar to AGAP000598-PA [Tribolium castaneum] gi|270011317|gb|EFA07765.1| hypothetical protein TcasGA2_TC005319 [Tribolium castaneum] Length = 244 Score = 274 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 89/192 (46%), Positives = 121/192 (63%), Gaps = 10/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT++TPNP +LKF+PG VL EG I F N + A SPL +F I G+ SV+ G + Sbjct: 49 MFIQTQETPNPNSLKFLPGVKVLEEGQTIDFPNGQAAYCSPLGKLLFRIEGVKSVFLGPE 108 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 FITV K D+ +W+ ++P + IM+ F SG P++++ E DS + Sbjct: 109 FITVTKTDDEIEWKIIKPEIFATIMDFFASGLPVLNDATPN-------ADTQINEDDSEI 161 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 VQ IKE+LD R+RP V DGGDI+F GY DGIV L ++GAC+ CPS+ TLK GV N+L Sbjct: 162 VQMIKELLDTRIRPTVQEDGGDIIFMGYDDGIVKLKLQGACTSCPSSIVTLKNGVQNMLQ 221 Query: 178 HFVPEVKDIRTV 189 ++PEV + V Sbjct: 222 FYIPEVLGVEQV 233 >gi|31874276|emb|CAD98142.1| hypothetical protein [Homo sapiens] Length = 242 Score = 274 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 118/191 (61%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 59 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 118 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ E D VV Sbjct: 119 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAG--------SEEDDEVV 170 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 171 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 230 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 231 YIPEVEGVEQV 241 >gi|328545933|ref|YP_004306042.1| nitrogen-fixing NifU-like protein [polymorphum gilvum SL003B-26A1] gi|326415673|gb|ADZ72736.1| Nitrogen-fixing NifU-like protein [Polymorphum gilvum SL003B-26A1] Length = 185 Score = 274 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 101/189 (53%), Positives = 144/189 (76%), Gaps = 4/189 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VVL +G F ++ EA SPLA ++F++PG+ +V+FG+DF Sbjct: 1 MFIQTEATPNPATLKFLPGRVVLADGTYDFRSSDEAGASPLAEKLFAVPGVVAVFFGHDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ITV KD DW+H++P +LG IME F+SG P++ + + D+ F D V Sbjct: 61 ITVTKDDTDWQHMKPAILGAIMEQFMSGTPVMRSAAVQAGGEDE----FFDSDDEETVTV 116 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IK++L+ RVRPAVA+DGGDI FKG+++G+V+LSMRGAC+GCPS++ TL++G+ N+L HFV Sbjct: 117 IKDLLETRVRPAVAQDGGDITFKGFKEGVVYLSMRGACAGCPSSTATLQHGIQNLLRHFV 176 Query: 181 PEVKDIRTV 189 PEV+++R + Sbjct: 177 PEVEEVRAI 185 >gi|255568026|ref|XP_002524990.1| HIRA-interacting protein, putative [Ricinus communis] gi|223535734|gb|EEF37397.1| HIRA-interacting protein, putative [Ricinus communis] Length = 271 Score = 274 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 87/191 (45%), Positives = 119/191 (62%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP++L F PG+ V+ G++ F NA+ A SPLA ++ I G V+FG DF Sbjct: 70 MFIQTQSTPNPSSLMFYPGKPVMEVGSVDFPNARAALNSPLAKSLYGIDGTTRVFFGSDF 129 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV K D W+ L+P + IM+ + SG P+ + + K + DS V Sbjct: 130 ITVTKSDDVSWDLLKPEIFAAIMDFYSSGQPLFLDSEIAASK-----DTAIHKDDSETVA 184 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 185 MIKELLETRIRPAVQDDGGDIEYRGFDPETGIVKLKMQGACSGCPSSSVTLKSGIENMLM 244 Query: 178 HFVPEVKDIRT 188 H+V EVK + Sbjct: 245 HYVSEVKGVEQ 255 >gi|224080725|ref|XP_002196481.1| PREDICTED: putative iron-sulfur cluster scaffold protein Nfu variant 3 [Taeniopygia guttata] Length = 252 Score = 274 bits (702), Expect = 4e-72, Method: Composition-based stats. Identities = 85/190 (44%), Positives = 118/190 (62%), Gaps = 9/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + FS A SPLA ++F I G+ SV+FG DF Sbjct: 55 MFIQTQDTPNPNSLKFIPGRAVLESRTMEFSTPAAAYCSPLARQLFRIEGVKSVFFGPDF 114 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K+ DW L+P + IM+ F SG P++ + E D VV Sbjct: 115 ITITKESEDLDWNLLKPDIYATIMDFFASGLPVVTDEAP-------RTDTAASEEDDEVV 167 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 168 LMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVLLKLQGSCTSCPSSLITLKSGIQNMLQF 227 Query: 179 FVPEVKDIRT 188 ++PEV+ + Sbjct: 228 YIPEVEGVEQ 237 >gi|121601928|ref|YP_989428.1| NifU family protein [Bartonella bacilliformis KC583] gi|120614105|gb|ABM44706.1| NifU family protein [Bartonella bacilliformis KC583] Length = 192 Score = 274 bits (702), Expect = 4e-72, Method: Composition-based stats. Identities = 97/189 (51%), Positives = 133/189 (70%), Gaps = 1/189 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+V+L EG + F +++ A SPLA+++F I ++ V GYD Sbjct: 1 MFIQTETTPNPATLKFLPGRVILSEGVLEFRDSEAAALGSPLAAKLFQISNVSGVLLGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K +W+HL+P +LG IMEH +S PI+ G + + E D+ +V Sbjct: 61 FITVTKSDGEWQHLKPVILGTIMEHLLSNAPIVSTGAAAHAQSHTHNEEFYDEKDADIVS 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ RVRPAVA DGGDI F+G+ GIV+L+MRGAC+GCPS++ TLK+G+ N+L HF Sbjct: 121 TIKELLETRVRPAVANDGGDITFRGFEHGIVYLNMRGACAGCPSSTATLKHGIENLLRHF 180 Query: 180 VPEVKDIRT 188 +PEV + Sbjct: 181 IPEVVGVEA 189 >gi|34500321|gb|AAQ73785.1| NifU-like protein HIRIP5 [Mus musculus] Length = 245 Score = 274 bits (701), Expect = 4e-72, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 119/191 (62%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 47 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 106 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ + E D VV Sbjct: 107 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTE------ETPPPPGEAGSEEDDEVV 160 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++++G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 161 AMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF 220 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 221 YIPEVEGVEQV 231 >gi|240850980|ref|YP_002972380.1| nitrogen fixation protein [Bartonella grahamii as4aup] gi|240268103|gb|ACS51691.1| nitrogen fixation protein [Bartonella grahamii as4aup] Length = 192 Score = 274 bits (701), Expect = 4e-72, Method: Composition-based stats. Identities = 100/189 (52%), Positives = 140/189 (74%), Gaps = 1/189 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VVL EG + F + +EA + SPLA+++F+IP I V+ GYD Sbjct: 1 MFIQTETTPNPATLKFLPGRVVLSEGVLEFRDPEEAAKNSPLAAKLFNIPNINGVFLGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K + +W+HL+P +LG IMEHF+S +P+I + + + E D+ +V Sbjct: 61 FITVSKKEGEWQHLKPVILGTIMEHFLSNEPVITTNATIQAQTHALNEEFYDEKDADIVL 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ R+RPAVA DGGDI F+G+ +GIV+L+MRGAC+GCPS++ TLK+G+ N+L HF Sbjct: 121 TIKELLETRIRPAVANDGGDITFRGFENGIVYLNMRGACAGCPSSTATLKHGIENLLRHF 180 Query: 180 VPEVKDIRT 188 +PEV + Sbjct: 181 IPEVLGVEA 189 >gi|241156886|ref|XP_002407882.1| conserved hypothetical protein [Ixodes scapularis] gi|215494245|gb|EEC03886.1| conserved hypothetical protein [Ixodes scapularis] Length = 260 Score = 274 bits (701), Expect = 4e-72, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 123/191 (64%), Gaps = 6/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT++TPNP LKF+P VL +G F A+ SPLA +F + G+ +V+FG DF Sbjct: 48 MFIQTQETPNPNCLKFLPNVKVLEQGTRDFPTLASAKDSPLAKHLFRVEGVKAVFFGSDF 107 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K D+ +W+ L+P + IM+ F +G P+++ G + D E DS V Sbjct: 108 ITVTKADDETEWQVLKPHLYAAIMDFFTTGLPVVNEDGTEPVAED----TRPKEDDSETV 163 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+++ R+RP V DGGDIV+ G+ DG+V L ++G+C+GCPS+S TLK G+ N+L Sbjct: 164 LMIKELIETRIRPTVQEDGGDIVYMGFEDGVVKLKLQGSCTGCPSSSVTLKAGIQNMLQF 223 Query: 179 FVPEVKDIRTV 189 +VPEVKD+ V Sbjct: 224 YVPEVKDVEQV 234 >gi|319898609|ref|YP_004158702.1| NifU-related protein [Bartonella clarridgeiae 73] gi|319402573|emb|CBI76118.1| NifU-related protein [Bartonella clarridgeiae 73] Length = 196 Score = 274 bits (701), Expect = 5e-72, Method: Composition-based stats. Identities = 99/189 (52%), Positives = 139/189 (73%), Gaps = 1/189 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNP TLKF+PG +VL +G + F N +EA + SPLA+++F+IP + SV+ GYD Sbjct: 1 MFIQTESTPNPTTLKFLPGCIVLPQGVLEFYNREEAAKNSPLAAKLFNIPNVKSVFLGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FIT+ K+ +W+HL+P +LG IMEHF+S DP+I + + + F E D+ +V Sbjct: 61 FITITKNDGEWQHLKPAILGTIMEHFLSNDPVITTNVITQTEAHMLDKEFFDEKDADIVV 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ R+RPAVA DGGDI F G+ +GIV+L+MRGAC+GCPS++ TLK+G+ N+L HF Sbjct: 121 VIKELLETRIRPAVANDGGDITFCGFENGIVYLNMRGACAGCPSSTATLKHGIENLLRHF 180 Query: 180 VPEVKDIRT 188 +PEV + Sbjct: 181 IPEVLGVEA 189 >gi|241202790|ref|YP_002973886.1| Scaffold protein Nfu/NifU [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856680|gb|ACS54347.1| Scaffold protein Nfu/NifU [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 188 Score = 274 bits (701), Expect = 5e-72, Method: Composition-based stats. Identities = 104/188 (55%), Positives = 143/188 (76%), Gaps = 1/188 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPAT KF+PG+VV+ G F + +EA+ SPLA+R+F I G+ VYFGYDF Sbjct: 1 MFIQTEATPNPATQKFLPGKVVMENGTAEFRSTEEAQASPLAARLFEISGVTGVYFGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 I+V KD DW+HL+P +LG IMEHF+SG P++ + + + D G F E D ++V Sbjct: 61 ISVSKDNADWQHLKPAILGSIMEHFMSGKPVMGDASILS-EDADAGDEFFDEGDESIVLT 119 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+L+ RVRPAVA+DGGDI F+G++DG V+L+M+G+C+GCPS++ TLK+GV N+L HFV Sbjct: 120 IKELLETRVRPAVAQDGGDITFRGFKDGKVYLNMKGSCAGCPSSTATLKHGVQNLLRHFV 179 Query: 181 PEVKDIRT 188 PEV+++ Sbjct: 180 PEVQEVIA 187 >gi|118590483|ref|ZP_01547885.1| nitrogen-fixing NifU-like protein [Stappia aggregata IAM 12614] gi|118436946|gb|EAV43585.1| nitrogen-fixing NifU-like protein [Stappia aggregata IAM 12614] Length = 185 Score = 274 bits (701), Expect = 5e-72, Method: Composition-based stats. Identities = 101/189 (53%), Positives = 146/189 (77%), Gaps = 4/189 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VVL EG F + +A +SPLA ++F +PG+ +V+FG+DF Sbjct: 1 MFIQTEATPNPATLKFLPGRVVLPEGTYDFRSKADAGVSPLAQKLFDVPGVVAVFFGHDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +TV KD+ DW+H++P +LG+IME F+SG P++ +++ + F D+ V Sbjct: 61 VTVTKDETDWQHMKPAILGVIMEQFMSGQPVMATSEAENIEEGE----FFEAGDADTVST 116 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+L+ RVRPAVA+DGGDI FKG+++GIV+LSMRGAC+GCPS++ TL++G+ N+L HFV Sbjct: 117 IKELLETRVRPAVAQDGGDITFKGFKEGIVYLSMRGACAGCPSSTATLQHGIQNLLRHFV 176 Query: 181 PEVKDIRTV 189 PEV+++R + Sbjct: 177 PEVEEVRPI 185 >gi|227820624|ref|YP_002824594.1| putative scaffold protein Nfu/NifU [Sinorhizobium fredii NGR234] gi|227339623|gb|ACP23841.1| putative scaffold protein Nfu/NifU [Sinorhizobium fredii NGR234] Length = 188 Score = 273 bits (700), Expect = 6e-72, Method: Composition-based stats. Identities = 111/190 (58%), Positives = 144/190 (75%), Gaps = 3/190 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEI-SPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VV+ G F + +EA SPLA+R+FSIPG++ VYFGYD Sbjct: 1 MFIQTEATPNPATLKFLPGKVVMENGTAEFRSEEEARTGSPLAARLFSIPGVSGVYFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K+ +W+HL+P VLG IMEHF+SG PI+ + D + E D A+V Sbjct: 61 FITVSKEGQEWQHLKPAVLGSIMEHFMSGQPIMSGASRAE--ETDQEGEFYDEGDEAIVA 118 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+LD RVRPAVA+DGGDI F+G++DG VFL+M+GACSGCPS++ TL++GV N+L HF Sbjct: 119 TIKELLDTRVRPAVAQDGGDITFRGFKDGTVFLNMKGACSGCPSSTATLRHGVQNLLRHF 178 Query: 180 VPEVKDIRTV 189 VPEV+ + +V Sbjct: 179 VPEVESVESV 188 >gi|148666781|gb|EDK99197.1| mCG130855, isoform CRA_a [Mus musculus] Length = 255 Score = 273 bits (700), Expect = 6e-72, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 119/191 (62%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 57 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 116 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ + E D VV Sbjct: 117 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTE------ETPPPPGEAGSEEDDEVV 170 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++++G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 171 AMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF 230 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 231 YIPEVEGVEQV 241 >gi|15964154|ref|NP_384507.1| hypothetical protein SMc01119 [Sinorhizobium meliloti 1021] gi|307301299|ref|ZP_07581061.1| Scaffold protein Nfu/NifU [Sinorhizobium meliloti BL225C] gi|307317970|ref|ZP_07597407.1| Scaffold protein Nfu/NifU [Sinorhizobium meliloti AK83] gi|15073330|emb|CAC41838.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306896372|gb|EFN27121.1| Scaffold protein Nfu/NifU [Sinorhizobium meliloti AK83] gi|306903755|gb|EFN34342.1| Scaffold protein Nfu/NifU [Sinorhizobium meliloti BL225C] Length = 188 Score = 273 bits (700), Expect = 6e-72, Method: Composition-based stats. Identities = 111/190 (58%), Positives = 144/190 (75%), Gaps = 3/190 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VV+ G F + +EA SPLA+R+FSIPG+ VYFGYD Sbjct: 1 MFIQTEATPNPATLKFLPGKVVMENGTAEFRSEEEALAGSPLAARLFSIPGVTGVYFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K+ +W+HL+P +LG IMEHF+SG PI+ G + D F E D A+V Sbjct: 61 FITVSKEAQEWQHLKPAILGSIMEHFMSGQPIMSGAGRAEQ--TDEEDEFFDEGDEAIVA 118 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ RVRPAVA+DGGDI F+G++DG VFL+M+GACSGCPS++ TL++GV N+L HF Sbjct: 119 TIKELLETRVRPAVAQDGGDITFRGFKDGTVFLNMKGACSGCPSSTATLRHGVQNLLRHF 178 Query: 180 VPEVKDIRTV 189 VPEV+ + +V Sbjct: 179 VPEVEAVESV 188 >gi|291386642|ref|XP_002709869.1| PREDICTED: HIRA interacting protein 5 [Oryctolagus cuniculus] Length = 255 Score = 273 bits (699), Expect = 7e-72, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 118/191 (61%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 60 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPASAFRSPLARQLFRIEGVKSVFFGPDF 119 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ KD + DW L+P + IM+ F SG P++ E D VV Sbjct: 120 ITITKDNEELDWNLLKPDIYATIMDFFASGLPLVTEETSSGEAG--------SEEDDEVV 171 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 172 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 231 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 232 YIPEVEGVEQV 242 >gi|197128017|gb|ACH44515.1| putative iron-sulfur cluster scaffold protein Nfu variant 3 [Taeniopygia guttata] Length = 252 Score = 273 bits (699), Expect = 7e-72, Method: Composition-based stats. Identities = 85/190 (44%), Positives = 118/190 (62%), Gaps = 9/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + FS A SPLA ++F I G+ SV+FG DF Sbjct: 55 MFIQTQDTPNPNSLKFIPGRAVLESRTMEFSTPAAAYCSPLARQLFRIEGVKSVFFGPDF 114 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K+ DW L+P + IM+ F SG P++ + E D VV Sbjct: 115 ITITKESEDLDWNLLKPDIYATIMDFFASGLPVVTDEAS-------RTDTAASEEDDEVV 167 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 168 LMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVLLKLQGSCTSCPSSLITLKSGIQNMLQF 227 Query: 179 FVPEVKDIRT 188 ++PEV+ + Sbjct: 228 YIPEVEGVEQ 237 >gi|282154801|ref|NP_064429.2| NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 2 precursor [Mus musculus] gi|205830867|sp|Q9QZ23|NFU1_MOUSE RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; AltName: Full=HIRA-interacting protein 5; Short=mHIRIP5; Flags: Precursor gi|12834577|dbj|BAB22965.1| unnamed protein product [Mus musculus] Length = 255 Score = 273 bits (699), Expect = 8e-72, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 119/191 (62%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 57 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 116 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ + E D VV Sbjct: 117 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTE------ETPPPPGEAGSEEDDEVV 170 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++++G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 171 AMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF 230 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 231 YIPEVEGVEQV 241 >gi|34500319|gb|AAQ73784.1| NifU-like protein HIRIP5 [Homo sapiens] gi|194374137|dbj|BAG62381.1| unnamed protein product [Homo sapiens] Length = 254 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 118/191 (61%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 59 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 118 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ E D VV Sbjct: 119 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAG--------SEEDDEVV 170 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 171 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 230 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 231 YIPEVEGVEQV 241 >gi|50593021|ref|NP_001002755.1| NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 2 [Homo sapiens] gi|205371805|sp|Q9UMS0|NFU1_HUMAN RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; AltName: Full=HIRA-interacting protein 5; Flags: Precursor gi|32967069|gb|AAP92372.1| iron-sulfur cluster scaffold protein Nfu [Homo sapiens] gi|109731123|gb|AAI13693.1| NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) [Homo sapiens] gi|109731125|gb|AAI13695.1| NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) [Homo sapiens] gi|119620255|gb|EAW99849.1| HIRA interacting protein 5, isoform CRA_a [Homo sapiens] gi|261860742|dbj|BAI46893.1| NFU1 iron-sulfur cluster scaffold homolog [synthetic construct] gi|313884030|gb|ADR83501.1| NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) [synthetic construct] Length = 254 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 118/191 (61%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 59 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 118 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ E D VV Sbjct: 119 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAG--------SEEDDEVV 170 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 171 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 230 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 231 YIPEVEGVEQV 241 >gi|254503238|ref|ZP_05115389.1| Scaffold protein Nfu/NifU N terminal domain protein [Labrenzia alexandrii DFL-11] gi|222439309|gb|EEE45988.1| Scaffold protein Nfu/NifU N terminal domain protein [Labrenzia alexandrii DFL-11] Length = 185 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 103/189 (54%), Positives = 146/189 (77%), Gaps = 4/189 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VVL EG F + +A SPLA ++F +PG+A+V+FG+DF Sbjct: 1 MFIQTEATPNPATLKFLPGRVVLPEGTYDFRSKADAGASPLAEKLFDVPGVAAVFFGHDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +TV KD DW+H++P +LG+IME F+SG P+++ G D++ + E+ V Sbjct: 61 VTVTKDDTDWQHMKPAILGVIMEQFMSGQPVMNAGESEDIEEGEFFEEGDQET----VAT 116 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+L+ RVRPAVA+DGGDI FKG+++GIV+LSMRGAC+GCPS++ TL++G+ N+L HFV Sbjct: 117 IKELLETRVRPAVAQDGGDITFKGFKEGIVYLSMRGACAGCPSSTATLQHGIQNLLRHFV 176 Query: 181 PEVKDIRTV 189 PEV+++R + Sbjct: 177 PEVEEVRPI 185 >gi|55596270|ref|XP_525775.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 8 [Pan troglodytes] gi|332813518|ref|XP_001137508.2| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 6 [Pan troglodytes] Length = 254 Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 118/191 (61%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 59 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 118 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ E D VV Sbjct: 119 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAG--------SEEDDEVV 170 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 171 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 230 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 231 YIPEVEGVEQV 241 >gi|71021777|ref|XP_761119.1| hypothetical protein UM04972.1 [Ustilago maydis 521] gi|46100569|gb|EAK85802.1| hypothetical protein UM04972.1 [Ustilago maydis 521] Length = 293 Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 84/193 (43%), Positives = 125/193 (64%), Gaps = 8/193 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPN +LKF+PG+ V+ G F + + + SPLA ++F+IPG+ SV++G DF Sbjct: 72 MFIQTESTPNEDSLKFLPGRQVMESGTHEFLDTRSSMASPLAKKLFNIPGVVSVFYGPDF 131 Query: 61 ITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV KD ++ W L+P + IME F SG P+ + D + +++DS VV Sbjct: 132 VTVSKDAEHQWSILKPEIYSSIMEFFTSGHPLFTDPESAAGSQDTV----ILDTDSEVVA 187 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY---RDGIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+LD RVRPA+ DGGD+ ++G+ DGIV + ++G+C GC S++ TLK G+ +L Sbjct: 188 MIKELLDTRVRPAIQEDGGDLEYRGFGEDTDGIVKVKLKGSCRGCDSSTVTLKSGIERML 247 Query: 177 NHFVPEVKDIRTV 189 H++PEVK + V Sbjct: 248 MHYIPEVKGVEQV 260 >gi|282154799|ref|NP_001100076.2| NFU1 iron-sulfur cluster scaffold homolog precursor [Rattus norvegicus] gi|149036647|gb|EDL91265.1| histone cell cycle regulation defective interacting protein 5 (predicted), isoform CRA_a [Rattus norvegicus] Length = 253 Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 118/191 (61%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 57 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 116 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ E D VV Sbjct: 117 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPPGEAG--------SEEDDEVV 168 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++++G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 169 AMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF 228 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 229 YIPEVEGVEQV 239 >gi|150395264|ref|YP_001325731.1| scaffold protein Nfu/NifU [Sinorhizobium medicae WSM419] gi|150026779|gb|ABR58896.1| Scaffold protein Nfu/NifU [Sinorhizobium medicae WSM419] Length = 188 Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 112/190 (58%), Positives = 145/190 (76%), Gaps = 3/190 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VV+ G F + +EA SPLA+R+FSIPGI VYFGYD Sbjct: 1 MFIQTEATPNPATLKFLPGKVVMENGTAEFRSEEEALAGSPLAARLFSIPGITGVYFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K+ +W+HL+P +LG IMEHF+SG PI+ G + +D F E D A+V Sbjct: 61 FITVSKEAQEWQHLKPAILGSIMEHFMSGQPIMSGAGRAEQLDED--EEFFDEGDEAIVA 118 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ RVRPAVA+DGGDI F+G++DG VFL+M+GACSGCPS++ TL++GV N+L HF Sbjct: 119 TIKELLETRVRPAVAQDGGDITFRGFKDGTVFLNMKGACSGCPSSTATLRHGVQNLLRHF 178 Query: 180 VPEVKDIRTV 189 VPEV+ + +V Sbjct: 179 VPEVESVESV 188 >gi|332226730|ref|XP_003262545.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like isoform 1 [Nomascus leucogenys] gi|332226732|ref|XP_003262546.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like isoform 2 [Nomascus leucogenys] Length = 254 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 118/191 (61%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 59 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 118 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K+ + DW L+P + IM+ F SG P++ E D VV Sbjct: 119 ITITKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAG--------SEEDDEVV 170 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 171 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 230 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 231 YIPEVEGVEQV 241 >gi|298293916|ref|YP_003695855.1| Scaffold protein Nfu/NifU [Starkeya novella DSM 506] gi|296930427|gb|ADH91236.1| Scaffold protein Nfu/NifU [Starkeya novella DSM 506] Length = 184 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 102/189 (53%), Positives = 136/189 (71%), Gaps = 5/189 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ VL G +A EA SPLA+R+F +PG+ V+FG DF Sbjct: 1 MFIQTEATPNPATLKFLPGRTVLGHGTFEARDADEASRSPLAARLFEVPGVTGVFFGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +TV K++ +W HL+P +LG IMEHF+SG P++ F E D+ VV Sbjct: 61 VTVTKEKGEWAHLKPAILGAIMEHFVSGQPVLPED-----HAHVADDAFFEEKDAGVVDT 115 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I+E++D RVRPAVA DGGDI F+GY+DG+VFL+M+G+CSGCPS++ TLK G+ N+L HFV Sbjct: 116 IRELIDTRVRPAVANDGGDITFRGYKDGVVFLAMKGSCSGCPSSTATLKNGIENLLRHFV 175 Query: 181 PEVKDIRTV 189 P+V ++R V Sbjct: 176 PDVVEVRPV 184 >gi|163757734|ref|ZP_02164823.1| hypothetical protein HPDFL43_20027 [Hoeflea phototrophica DFL-43] gi|162285236|gb|EDQ35518.1| hypothetical protein HPDFL43_20027 [Hoeflea phototrophica DFL-43] Length = 187 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 103/190 (54%), Positives = 138/190 (72%), Gaps = 4/190 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VV+ G F +A+EA S LA ++F IPG+ V++GYD Sbjct: 1 MFIQTESTPNPATLKFLPGKVVMQSGTADFRDAEEAGATSQLAGKLFGIPGVIGVFYGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FIT+ KD DW+HL+P +LG IMEHF+SG P++ + F D +V Sbjct: 61 FITITKDDADWQHLKPAILGTIMEHFMSGAPVMSGPVGEVPEG---EEEFFESGDETIVA 117 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L++RVRPAVA+DGGDI F+G+RDG VFL M+GAC+GCPS++ TLK+G+ N+L HF Sbjct: 118 TIKELLESRVRPAVAQDGGDITFRGFRDGKVFLHMKGACAGCPSSTATLKHGIQNLLRHF 177 Query: 180 VPEVKDIRTV 189 VPEV+++ V Sbjct: 178 VPEVREVEAV 187 >gi|254454487|ref|ZP_05067924.1| NifU domain protein [Octadecabacter antarcticus 238] gi|198268893|gb|EDY93163.1| NifU domain protein [Octadecabacter antarcticus 238] Length = 183 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 93/190 (48%), Positives = 132/190 (69%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQ++ TPNPATLKF+PG V+ +G + F ++A SPLAS++F + G+ V+FG DF Sbjct: 1 MFIQSQQTPNPATLKFLPGVAVMEQGTVSFPTREDAARSPLASQLFDVNGVDGVFFGGDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV K D DW L+P +LG IMEHF SG P+++ M + D +V Sbjct: 61 ITVTKTDDMDWTPLKPAILGAIMEHFTSGQPLLNEDAS-------MSDHAVSDDDDELVT 113 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI+F G+ G+V+L ++GACSGCPS++ TLK G+ N+L H+ Sbjct: 114 QIKELLDTRVRPAVAQDGGDILFHGFERGVVYLQLQGACSGCPSSTATLKGGIENMLRHY 173 Query: 180 VPEVKDIRTV 189 +P+V ++R + Sbjct: 174 IPDVIEVRAI 183 >gi|114577889|ref|XP_001137105.1| PREDICTED: similar to HIRA interacting protein 5 isoform 1 [Pan troglodytes] Length = 240 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 85/190 (44%), Positives = 117/190 (61%), Gaps = 10/190 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 59 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 118 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ E D VV Sbjct: 119 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAG--------SEEDDEVV 170 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 171 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 230 Query: 179 FVPEVKDIRT 188 ++PEV+ + Sbjct: 231 YIPEVEGVEQ 240 >gi|302832552|ref|XP_002947840.1| hypothetical protein VOLCADRAFT_88148 [Volvox carteri f. nagariensis] gi|300266642|gb|EFJ50828.1| hypothetical protein VOLCADRAFT_88148 [Volvox carteri f. nagariensis] Length = 314 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 86/189 (45%), Positives = 124/189 (65%), Gaps = 8/189 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +L F+PG+ V+ G + FS+A+E SPLA ++F+I GI SV+FG DF Sbjct: 82 MFIQTQPTPNPNSLMFVPGKPVMESGTLEFSSAREGMKSPLAKKLFAIDGITSVFFGSDF 141 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D + W L+P + IM+ + SG+P++ + DS VV Sbjct: 142 VTVTKRDDFTWPVLKPDIFAAIMDFYSSGEPLVSDAAAL-----ASSDTAIHPDDSEVVA 196 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDIV+KG+ + G+V + + GACS CPS++ TLK G+ N+L Sbjct: 197 MIKELLETRIRPAVQEDGGDIVYKGFEEDTGMVMVKLVGACSTCPSSTVTLKNGIENMLM 256 Query: 178 HFVPEVKDI 186 H++PEVK + Sbjct: 257 HYIPEVKGV 265 >gi|163797123|ref|ZP_02191078.1| nitrogen-fixing NifU-like protein [alpha proteobacterium BAL199] gi|159177639|gb|EDP62192.1| nitrogen-fixing NifU-like protein [alpha proteobacterium BAL199] Length = 187 Score = 271 bits (694), Expect = 3e-71, Method: Composition-based stats. Identities = 98/189 (51%), Positives = 131/189 (69%), Gaps = 7/189 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE+TPNPATLKF+PG+ V+ G F + E SPLA +F + G+ V+ GYDF Sbjct: 1 MFIQTEETPNPATLKFLPGRQVMESGTAEFKSEDETARSPLAQALFQVDGVTGVFLGYDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I+V K D +W ++P VLG+IMEHF++G P I G +D G D+ +V Sbjct: 61 ISVSKHDGKEWYLMKPGVLGVIMEHFVAGRPTIVEDGASASAPEDAG------EDTEIVS 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA DGGDI F+GY DG+V L M+GACSGCPS++ TLK G+ N+L H+ Sbjct: 115 QIKELLDTRVRPAVAMDGGDITFQGYEDGVVTLQMQGACSGCPSSTATLKMGIENMLRHY 174 Query: 180 VPEVKDIRT 188 +PEV+++R Sbjct: 175 IPEVREVRA 183 >gi|50593025|ref|NP_056515.2| NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 1 [Homo sapiens] gi|32967071|gb|AAP92373.1| cytosolic iron-sulfur cluster scaffold protein Nfu [Homo sapiens] gi|119620256|gb|EAW99850.1| HIRA interacting protein 5, isoform CRA_b [Homo sapiens] Length = 230 Score = 271 bits (694), Expect = 3e-71, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 118/191 (61%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 35 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 94 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ E D VV Sbjct: 95 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAG--------SEEDDEVV 146 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 147 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 206 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 207 YIPEVEGVEQV 217 >gi|114577877|ref|XP_001137587.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 7 [Pan troglodytes] Length = 230 Score = 271 bits (694), Expect = 3e-71, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 118/191 (61%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 35 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 94 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ E D VV Sbjct: 95 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAG--------SEEDDEVV 146 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 147 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 206 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 207 YIPEVEGVEQV 217 >gi|126304005|ref|XP_001381686.1| PREDICTED: similar to iron-sulfur cluster scaffold protein Nfu [Monodelphis domestica] Length = 235 Score = 271 bits (693), Expect = 4e-71, Method: Composition-based stats. Identities = 87/191 (45%), Positives = 118/191 (61%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+ G DF Sbjct: 40 MFIQTQDTPNPNSLKFIPGKSVLGSQTMDFPTPATAFRSPLARQLFRIEGVKSVFLGPDF 99 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ DW L+P + IM+ F SG PI+ + S E D VV Sbjct: 100 ITVTKESEDLDWNLLKPDIYATIMDFFASGLPILTE--------ETPSSETATEEDDEVV 151 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 152 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 211 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 212 YIPEVEGVEQV 222 >gi|194897711|ref|XP_001978709.1| GG17526 [Drosophila erecta] gi|263504966|sp|B3NYF7|NFU1_DROER RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; Flags: Precursor gi|190650358|gb|EDV47636.1| GG17526 [Drosophila erecta] Length = 283 Score = 271 bits (693), Expect = 4e-71, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 118/191 (61%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G F N A SPLA +F + G+ V+FG D Sbjct: 67 MFIQTQDTPNPDSLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGAD 126 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+T+ K + +W ++P V +IM+ F SG P++H+ + +E D V Sbjct: 127 FVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLHDAQPN-------ADTEILEDDDETV 179 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF GY G+V L M+G+CS CPS+ TLK GV N+L Sbjct: 180 MMIKELLDTRIRPTVQEDGGDIVFMGYEAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 240 YIPEVESVEQV 250 >gi|154254042|ref|YP_001414866.1| scaffold protein Nfu/NifU [Parvibaculum lavamentivorans DS-1] gi|154157992|gb|ABS65209.1| Scaffold protein Nfu/NifU [Parvibaculum lavamentivorans DS-1] Length = 201 Score = 271 bits (693), Expect = 4e-71, Method: Composition-based stats. Identities = 102/190 (53%), Positives = 135/190 (71%), Gaps = 5/190 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+ VL EG A F A+ A SPLA R+F++ + V+FG D Sbjct: 16 MFIQTEATPNPATLKFLPGREVLGEGRAADFPTAEAAARSPLAMRLFAVENVTGVFFGSD 75 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K +W+HL+P +LG IMEHF G PI+ + D G+ D +V Sbjct: 76 FITVTKSGGEWQHLKPALLGAIMEHFTGGAPILFSAAPDDDDAHAAHEGE----DGEIVT 131 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F+GY +G+VFL+M+GAC+GCPS++ TLK GV N+L H+ Sbjct: 132 QIKEILDTRVRPAVAQDGGDITFQGYEEGVVFLNMQGACAGCPSSTVTLKRGVENMLKHY 191 Query: 180 VPEVKDIRTV 189 +PE+ ++R V Sbjct: 192 IPEIVEVRQV 201 >gi|332226734|ref|XP_003262547.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like isoform 3 [Nomascus leucogenys] Length = 230 Score = 270 bits (692), Expect = 5e-71, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 118/191 (61%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 35 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 94 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K+ + DW L+P + IM+ F SG P++ E D VV Sbjct: 95 ITITKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAG--------SEEDDEVV 146 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 147 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 206 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 207 YIPEVEGVEQV 217 >gi|195169040|ref|XP_002025336.1| GL13432 [Drosophila persimilis] gi|263504975|sp|B4H303|NFU1_DROPE RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; Flags: Precursor gi|194108792|gb|EDW30835.1| GL13432 [Drosophila persimilis] Length = 282 Score = 270 bits (692), Expect = 5e-71, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 119/191 (62%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G F + A SPLA +F + G+ +V+FG D Sbjct: 63 MFIQTQDTPNPDSLKFLPGVEVLGKGNTYDFPSGTAAHCSPLAKLLFRVEGVRAVFFGSD 122 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FIT+ K++ +W ++P V +IM+ F SG PI+H + ++ D V Sbjct: 123 FITISKEESAEWSLIKPEVFAVIMDFFASGLPILHEARPN-------ADTEILDDDDETV 175 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF Y +G+V L M+G+CS CPS+ TLK GV N+L Sbjct: 176 MMIKELLDTRIRPTVQEDGGDIVFISYENGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 235 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 236 YIPEVESVEQV 246 >gi|296087967|emb|CBI35250.3| unnamed protein product [Vitis vinifera] Length = 202 Score = 270 bits (692), Expect = 5e-71, Method: Composition-based stats. Identities = 88/191 (46%), Positives = 118/191 (61%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNPA+L F PG+ V+ G+ F N++ A SPLA ++ I GI V+FG DF Sbjct: 1 MFIQTQSTPNPASLMFYPGKPVMEVGSADFPNSRSAMSSPLAKSLYGIDGITRVFFGSDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV K D W+ ++P + IM+ + SG P+ + E DS V Sbjct: 61 ITVTKSDDASWDFIKPEIFAAIMDFYSSGKPLFLDSNTA-----AAMDTAIHEDDSETVA 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 116 MIKELLETRIRPAVQDDGGDIEYRGFDPETGIVKLKMQGACSGCPSSSVTLKSGIENMLM 175 Query: 178 HFVPEVKDIRT 188 H+VPEVK + Sbjct: 176 HYVPEVKGVEQ 186 >gi|6760408|gb|AAF28338.1|AF213379_1 r10h10-like protein TO42 [Drosophila melanogaster] gi|6554171|gb|AAF16622.1| TO42 [Drosophila melanogaster] Length = 286 Score = 270 bits (691), Expect = 6e-71, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 118/191 (61%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G F N A SPLA +F + G+ V+FG D Sbjct: 70 MFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHNSPLAKLLFRVEGVKGVFFGAD 129 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+T+ K + +W ++P V +IM+ F SG P++++ + +E D V Sbjct: 130 FVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPN-------ADTEILEDDDETV 182 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF GY G+V L M+G+CS CPS+ TLK GV N+L Sbjct: 183 MMIKELLDTRIRPTVQEDGGDIVFMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 242 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 243 YIPEVESVEQV 253 >gi|57529447|ref|NP_001006305.1| NFU1 iron-sulfur cluster scaffold homolog, mitochondrial [Gallus gallus] gi|53136898|emb|CAG32778.1| hypothetical protein RCJMB04_35n21 [Gallus gallus] Length = 232 Score = 270 bits (691), Expect = 6e-71, Method: Composition-based stats. Identities = 85/190 (44%), Positives = 118/190 (62%), Gaps = 9/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + FS+ A SPLA ++F I G+ SV+FG DF Sbjct: 35 MFIQTQDTPNPNSLKFIPGKEVLESRTMEFSSPAAAFCSPLARQLFRIEGVKSVFFGPDF 94 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K+ DW L+P + IM+ F SG P++ E D VV Sbjct: 95 ITITKESEDLDWNLLKPDIYATIMDFFASGLPVLTEEAP-------RTDTAQSEEDDEVV 147 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 148 LMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 207 Query: 179 FVPEVKDIRT 188 ++PEV+ + Sbjct: 208 YIPEVEGVEQ 217 >gi|195482335|ref|XP_002102005.1| GE15286 [Drosophila yakuba] gi|263505516|sp|B4PZ52|NFU1_DROYA RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; Flags: Precursor gi|194189529|gb|EDX03113.1| GE15286 [Drosophila yakuba] Length = 283 Score = 270 bits (691), Expect = 6e-71, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 118/191 (61%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G F N A SPLA +F + G+ V+FG D Sbjct: 67 MFIQTQDTPNPDSLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGAD 126 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+T+ K + +W ++P V +IM+ F SG P++H+ + +E D V Sbjct: 127 FVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLHDAQPN-------ADTEILEDDDETV 179 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF GY G+V L M+G+CS CPS+ TLK GV N+L Sbjct: 180 MMIKELLDTRIRPTVQEDGGDIVFMGYEAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 240 YIPEVESVEQV 250 >gi|196003412|ref|XP_002111573.1| hypothetical protein TRIADDRAFT_55734 [Trichoplax adhaerens] gi|190585472|gb|EDV25540.1| hypothetical protein TRIADDRAFT_55734 [Trichoplax adhaerens] Length = 236 Score = 270 bits (691), Expect = 6e-71, Method: Composition-based stats. Identities = 83/191 (43%), Positives = 121/191 (63%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT DTPNP +LKF+PG VL G I +S+A++A SPLA +F + G+ SV+ G DF Sbjct: 36 MFIQTLDTPNPNSLKFVPGVPVLGSGTIDYSSARDALTSPLAKNLFRVDGVKSVFLGPDF 95 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +T+ + D +W L+P + +IM+ F SG P++ + + DS V Sbjct: 96 VTISRADDDIEWNTLKPDIYAVIMDFFASGAPVL-------IDYEPATDTAVQPEDSDTV 148 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+L+ R+RP + DGGDIV+ GY +GIV L M+GAC CPSA+ TLK+G+ N+L Sbjct: 149 AMIKELLETRIRPTLQEDGGDIVYMGYDNGIVKLKMQGACDSCPSATVTLKHGIQNMLQF 208 Query: 179 FVPEVKDIRTV 189 ++PEV+ + + Sbjct: 209 YIPEVEGVEQI 219 >gi|195392814|ref|XP_002055049.1| GJ19011 [Drosophila virilis] gi|263505537|sp|B4M375|NFU1_DROVI RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; Flags: Precursor gi|194149559|gb|EDW65250.1| GJ19011 [Drosophila virilis] Length = 298 Score = 270 bits (691), Expect = 7e-71, Method: Composition-based stats. Identities = 88/191 (46%), Positives = 120/191 (62%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G F + A SPLA +F + G+ +V+FG D Sbjct: 75 MFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPSGSAAHCSPLAKLLFRVEGVRAVFFGGD 134 Query: 60 FITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FIT+ K++ +W ++P V +IM+ F SG P+IH + +E D V Sbjct: 135 FITISKEESGEWGLIKPEVFAVIMDFFASGLPVIHEARPN-------ADTEILEDDDETV 187 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF GY +GIV L M+G+CS CPS+ TLK GV N+L Sbjct: 188 MMIKELLDTRIRPTVQEDGGDIVFMGYENGIVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 247 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 248 YIPEVESVEQV 258 >gi|319409218|emb|CBI82862.1| NifU-related protein [Bartonella schoenbuchensis R1] Length = 196 Score = 270 bits (691), Expect = 7e-71, Method: Composition-based stats. Identities = 102/189 (53%), Positives = 141/189 (74%), Gaps = 1/189 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VVL +G + F N+KEA + SPLA+++F+IP ++SV G+D Sbjct: 1 MFIQTETTPNPATLKFLPGRVVLAKGVLEFHNSKEADQNSPLAAKLFTIPNVSSVLLGHD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FI V K+ +W+HL+P +LG IMEHF+S DP + N + + + E D+ +V Sbjct: 61 FIAVTKNDGEWQHLKPAILGTIMEHFLSNDPTVINDATLQTQAPEAYEEFYDEKDADIVM 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ RVRPAVA DGGDI F+G+ DGIV+L+MRGAC+GCPS++ TLK+G+ N+L HF Sbjct: 121 TIKEILETRVRPAVANDGGDITFRGFEDGIVYLNMRGACAGCPSSTATLKHGIENLLRHF 180 Query: 180 VPEVKDIRT 188 +PEV + Sbjct: 181 IPEVLGVEA 189 >gi|198470316|ref|XP_002133420.1| GA22888 [Drosophila pseudoobscura pseudoobscura] gi|263504850|sp|B5DKJ8|NFU1_DROPS RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; Flags: Precursor gi|198145392|gb|EDY72048.1| GA22888 [Drosophila pseudoobscura pseudoobscura] Length = 286 Score = 270 bits (691), Expect = 7e-71, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 119/191 (62%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G F + A SPLA +F + G+ +V+FG D Sbjct: 67 MFIQTQDTPNPDSLKFLPGVEVLGKGNTYDFPSGTAAHCSPLAKLLFRVEGVRAVFFGSD 126 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FIT+ K++ +W ++P V +IM+ F SG PI+H + ++ D V Sbjct: 127 FITISKEESAEWSLIKPEVFAVIMDFFASGLPILHEARPN-------ADTEILDDDDETV 179 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF Y +G+V L M+G+CS CPS+ TLK GV N+L Sbjct: 180 MMIKELLDTRIRPTVQEDGGDIVFISYENGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 240 YIPEVESVEQV 250 >gi|73970249|ref|XP_855433.1| PREDICTED: similar to HIRA interacting protein 5 isoform 2 [Canis familiaris] Length = 253 Score = 270 bits (691), Expect = 7e-71, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 118/191 (61%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 58 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 117 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ E D VV Sbjct: 118 ITVTKESEELDWNLLKPDIYATIMDFFASGLPLVTEETSSGEAG--------SEEDDEVV 169 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 170 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 229 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 230 YIPEVEGVEQV 240 >gi|195357024|ref|XP_002044916.1| GM13534 [Drosophila sechellia] gi|263505008|sp|B4IMF6|NFU1_DROSE RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; Flags: Precursor gi|194124051|gb|EDW46094.1| GM13534 [Drosophila sechellia] Length = 283 Score = 270 bits (690), Expect = 8e-71, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 118/191 (61%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G F N A SPLA +F + G+ V+FG D Sbjct: 67 MFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGAD 126 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FIT+ K + +W ++P V +IM+ F SG P++++ + +E D V Sbjct: 127 FITISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPN-------ADTEILEDDDETV 179 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF GY G+V L M+G+CS CPS+ TLK GV N+L Sbjct: 180 MMIKELLDTRIRPTVQEDGGDIVFMGYEAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 240 YIPEVESVEQV 250 >gi|209883678|ref|YP_002287535.1| nitrogen-fixing NifU domain protein [Oligotropha carboxidovorans OM5] gi|209871874|gb|ACI91670.1| nitrogen-fixing NifU domain protein [Oligotropha carboxidovorans OM5] Length = 187 Score = 270 bits (690), Expect = 8e-71, Method: Composition-based stats. Identities = 98/188 (52%), Positives = 138/188 (73%), Gaps = 2/188 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG++V+ G + F++ SPLA+++F IPG+ V++ DF Sbjct: 1 MFIQTEATPNPATLKFLPGRLVIESGTMEFTDRDSTARSPLAAKLFDIPGVTGVFYSSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ITV K + DW+HL+P +LG IMEH++SG PI+ +G D F E+D+ V Sbjct: 61 ITVTKGEGDWQHLKPAILGTIMEHYMSGAPILADGAKPDAGPH--AEEFFNEADAETVTI 118 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IK++++ RVRPAVA DGGDI F+G++DGIVFL M+G+CSGCPS++ TLK+G+ N+L HFV Sbjct: 119 IKDIIETRVRPAVASDGGDITFRGFKDGIVFLDMKGSCSGCPSSTATLKHGIQNLLKHFV 178 Query: 181 PEVKDIRT 188 P+V ++R Sbjct: 179 PDVVEVRP 186 >gi|24643765|ref|NP_728443.1| CG32857 [Drosophila melanogaster] gi|45551492|ref|NP_728447.2| CG32500 [Drosophila melanogaster] gi|45556188|ref|NP_996529.1| CG33502 [Drosophila melanogaster] gi|74866115|sp|Q8SY96|NFU1_DROME RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; Flags: Precursor gi|17946577|gb|AAL49319.1| RH16335p [Drosophila melanogaster] gi|22831388|gb|AAG22462.2| CG33502 [Drosophila melanogaster] gi|22831391|gb|AAN09001.1| CG32857 [Drosophila melanogaster] gi|45446754|gb|AAN09005.2| CG32500 [Drosophila melanogaster] gi|220949278|gb|ACL87182.1| CG32500-PA [synthetic construct] gi|220958368|gb|ACL91727.1| CG32500-PA [synthetic construct] Length = 283 Score = 270 bits (690), Expect = 9e-71, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 118/191 (61%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G F N A SPLA +F + G+ V+FG D Sbjct: 67 MFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHNSPLAKLLFRVEGVKGVFFGAD 126 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+T+ K + +W ++P V +IM+ F SG P++++ + +E D V Sbjct: 127 FVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPN-------ADTEILEDDDETV 179 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF GY G+V L M+G+CS CPS+ TLK GV N+L Sbjct: 180 MMIKELLDTRIRPTVQEDGGDIVFMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 240 YIPEVESVEQV 250 >gi|194763845|ref|XP_001964043.1| GF20932 [Drosophila ananassae] gi|263505256|sp|B3MRT7|NFU1_DROAN RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; Flags: Precursor gi|190618968|gb|EDV34492.1| GF20932 [Drosophila ananassae] Length = 286 Score = 270 bits (690), Expect = 9e-71, Method: Composition-based stats. Identities = 88/191 (46%), Positives = 120/191 (62%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G F + A SPLA +F + G+ +V+FG D Sbjct: 67 MFIQTQDTPNPESLKFLPGVEVLGKGNTHDFPSGTTAHGSPLAKLLFRVEGVRAVFFGAD 126 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FIT+ K++ +W ++P V +IM+ F SG PI+H + +E D V Sbjct: 127 FITISKEEGAEWSLIKPEVFAVIMDFFASGLPILHESTPN-------ADTEILEDDDETV 179 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF GY +GIV L M+G+CS CPS+ TLK GV N+L Sbjct: 180 MMIKELLDTRIRPTVQEDGGDIVFMGYENGIVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 240 YIPEVESVEQV 250 >gi|114326814|ref|YP_743971.1| Fe-S cluster assembly protein NFU [Granulibacter bethesdensis CGDNIH1] gi|114314988|gb|ABI61048.1| Fe-S cluster assembly protein NFU [Granulibacter bethesdensis CGDNIH1] Length = 186 Score = 270 bits (690), Expect = 9e-71, Method: Composition-based stats. Identities = 98/190 (51%), Positives = 132/190 (69%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFI+TE TPNPATLKF+PG+ V+ G F++A A+ SPLA +F +PGIA V+ G DF Sbjct: 1 MFIETEGTPNPATLKFLPGRDVMPGGTADFASAATAQRSPLALALFELPGIARVFLGADF 60 Query: 61 ITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K +W L+P VL +M+HF++G P++++ D+ D D +V Sbjct: 61 VTVTKSSDVEWPELKPQVLAALMDHFVTGRPVLND------TPSDVLEEDIRPEDREIVD 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA DGGDIVF+GYRDG+V L M+GACSGCPS+ TLK+G+ N+L H+ Sbjct: 115 QIKELLDTRVRPAVAGDGGDIVFRGYRDGVVLLHMQGACSGCPSSRATLKHGIENMLRHY 174 Query: 180 VPEVKDIRTV 189 VPEV + V Sbjct: 175 VPEVLAVEQV 184 >gi|195568040|ref|XP_002107563.1| GD15490 [Drosophila simulans] gi|263505455|sp|B4R3T1|NFU1_DROSI RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; Flags: Precursor gi|194204973|gb|EDX18549.1| GD15490 [Drosophila simulans] Length = 283 Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 118/191 (61%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G F + A SPLA +F + G+ V+FG D Sbjct: 67 MFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPHGTTAHSSPLAKLLFRVEGVKGVFFGAD 126 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FIT+ K + +W ++P V +IM+ F SG P++++ + +E D V Sbjct: 127 FITISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPN-------ADTEILEDDDETV 179 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF GY G+V L M+G+CS CPS+ TLK GV N+L Sbjct: 180 MMIKELLDTRIRPTVQEDGGDIVFMGYEAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 240 YIPEVESVEQV 250 >gi|254470949|ref|ZP_05084352.1| nitrogen fixation protein [Pseudovibrio sp. JE062] gi|211960091|gb|EEA95288.1| nitrogen fixation protein [Pseudovibrio sp. JE062] Length = 186 Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 109/188 (57%), Positives = 145/188 (77%), Gaps = 3/188 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VVL EG F +A+EA ISPLA ++FSIPG+ ++FG+DF Sbjct: 1 MFIQTEATPNPATLKFLPGRVVLPEGTRDFRSAEEAAISPLAEKLFSIPGVVGIFFGHDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ITV KD+ DW+H+RP +LG IME+F++ PI+ GD D+G F D V Sbjct: 61 ITVTKDETDWQHMRPAILGAIMENFMANTPILKGEETGDG---DIGEEFFDAEDEETVTM 117 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+L+ RVRPAVA+DGGDI F+GYR+GIV+LSMRGAC+GCPS++ TL +G+ N++ HF+ Sbjct: 118 IKELLETRVRPAVAQDGGDITFRGYREGIVYLSMRGACAGCPSSTATLSHGIQNLMRHFI 177 Query: 181 PEVKDIRT 188 PEV+++R Sbjct: 178 PEVQEVRQ 185 >gi|83313502|ref|YP_423766.1| HIRA-interacting protein 5 [Magnetospirillum magneticum AMB-1] gi|82948343|dbj|BAE53207.1| HIRA-interacting protein 5 [Magnetospirillum magneticum AMB-1] Length = 190 Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 101/190 (53%), Positives = 135/190 (71%), Gaps = 10/190 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG VV+ +G F+ A A SPLA+R+F+I G+ SV+ G DF Sbjct: 9 MFIQTEPTPNPATLKFLPGTVVMGQGTADFAEASRASGSPLATRLFAIDGVGSVFLGTDF 68 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV K D DW+ ++P VL IM+H+ SGDP+I+ G D D +V Sbjct: 69 ITVAKLDAADWQVVKPQVLAAIMDHYNSGDPVINPGSEAAAASGD---------DDGIVM 119 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI+F+ + DGIV+L ++GACSGCPS+S TLK+G+ N+L ++ Sbjct: 120 QIKELLDTRVRPAVAQDGGDIIFRAFEDGIVYLHLQGACSGCPSSSATLKHGIENMLKYY 179 Query: 180 VPEVKDIRTV 189 VPEV ++ V Sbjct: 180 VPEVMAVQAV 189 >gi|26324295|dbj|BAC24985.1| unnamed protein product [Mus musculus] Length = 200 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 119/191 (62%), Gaps = 7/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 1 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 60 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ G E D VV Sbjct: 61 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETP-----PPPGEAGSSEEDDEVV 115 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++++G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 116 AMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF 175 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 176 YIPEVEGVEQV 186 >gi|195447128|ref|XP_002071076.1| GK25604 [Drosophila willistoni] gi|263505026|sp|B4NE93|NFU1_DROWI RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; Flags: Precursor gi|194167161|gb|EDW82062.1| GK25604 [Drosophila willistoni] Length = 289 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 87/191 (45%), Positives = 119/191 (62%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G F + A SPLA +F + G+ SV+FG D Sbjct: 68 MFIQTQDTPNPESLKFLPGVEVLGKGNTYDFPSVAAAHCSPLAKLLFRVEGVRSVFFGSD 127 Query: 60 FITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FIT+ K++ +W ++P V +IM+ F SG PI+H + +E D V Sbjct: 128 FITISKEEAAEWGLIKPEVFAVIMDFFASGLPILHEARNN-------ADTEILEDDDETV 180 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF Y +G+V L M+G+CS CPS+ TLK GV N+L Sbjct: 181 MMIKELLDTRIRPTVQEDGGDIVFMSYDNGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 240 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 241 YIPEVESVEQV 251 >gi|49474596|ref|YP_032638.1| hypothetical protein BQ10720 [Bartonella quintana str. Toulouse] gi|49240100|emb|CAF26539.1| hypothetical protein BQ10720 [Bartonella quintana str. Toulouse] Length = 192 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 100/189 (52%), Positives = 135/189 (71%), Gaps = 1/189 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VVL +G + F N++EA + SPLA+++F+IP + V GYD Sbjct: 1 MFIQTETTPNPATLKFLPGRVVLSKGVLEFRNSEEAAKNSPLAAKLFNIPNVNGVLLGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FITV K +W+HL+P +LG IMEHF+S P+I + + + E D +V Sbjct: 61 FITVSKKDGEWQHLKPAILGTIMEHFLSDAPVIKTNATIQAQTHALNEEFYDEKDVDIVS 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ RVRPAVA DGGDI F G+ +GIV+L+MRGAC+GCPS++ TLK G+ N+L HF Sbjct: 121 TIKELLETRVRPAVANDGGDITFCGFENGIVYLNMRGACAGCPSSTATLKTGIENLLRHF 180 Query: 180 VPEVKDIRT 188 +PEV + Sbjct: 181 IPEVLGVEA 189 >gi|326932642|ref|XP_003212423.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like [Meleagris gallopavo] Length = 233 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 84/190 (44%), Positives = 118/190 (62%), Gaps = 9/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + FS+ A SPLA ++F I G+ S++FG DF Sbjct: 36 MFIQTQDTPNPNSLKFIPGKEVLDSRTMEFSSPAAAFCSPLARQLFRIEGVKSIFFGPDF 95 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K+ DW L+P + IM+ F SG P++ E D VV Sbjct: 96 ITITKESEDLDWNLLKPDIYATIMDFFASGLPVLTEEAP-------RTDTAQSEEDDEVV 148 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 149 LMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 208 Query: 179 FVPEVKDIRT 188 ++PEV+ + Sbjct: 209 YIPEVEGVEQ 218 >gi|319403933|emb|CBI77521.1| NifU-related protein [Bartonella rochalimae ATCC BAA-1498] Length = 190 Score = 268 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 100/189 (52%), Positives = 139/189 (73%), Gaps = 7/189 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNP TLKF+PG++VL +G + F N +EA + SPLA+++F+IP I SV+ GYD Sbjct: 1 MFIQTESTPNPTTLKFLPGRIVLPQGTLEFHNREEAAKNSPLAAKLFNIPNIKSVFLGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FIT+ K+ +W+HL+P +LG IME+F+S DP+I + + F E D+ +V Sbjct: 61 FITITKNDGEWQHLKPAILGTIMEYFLSNDPVITT------EANLPNKEFFDEKDTDIVV 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ RVRPAVA DGGDI F G+ +GIV+L+MRGAC+GCPS++ TLK+G+ N+L HF Sbjct: 115 VIKELLETRVRPAVANDGGDITFCGFENGIVYLNMRGACAGCPSSTATLKHGIENLLRHF 174 Query: 180 VPEVKDIRT 188 +PEV + Sbjct: 175 IPEVLGVEA 183 >gi|114706882|ref|ZP_01439782.1| nitrogen fixation protein [Fulvimarina pelagi HTCC2506] gi|114537830|gb|EAU40954.1| nitrogen fixation protein [Fulvimarina pelagi HTCC2506] Length = 187 Score = 268 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 103/189 (54%), Positives = 140/189 (74%), Gaps = 4/189 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VVL +G F++ EA + SPLA+R+F + G+ V+FG+D Sbjct: 1 MFIQTEVTPNPATLKFLPGRVVLEQGTEEFTSIDEAAQRSPLAARLFEVDGVTGVFFGFD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 F+TV KDQ DW HL+P +L +MEHF++ P++ + + G F E D V Sbjct: 61 FVTVTKDQGDWAHLKPAILAGLMEHFVANRPVMAETSAMNS---EPGEEFFDEGDKETVA 117 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+++ RVRPAVA+DGGDI F+GYRDGIV+L+MRGACSGCPS++ TLK+G+ N+L HF Sbjct: 118 TIKELIETRVRPAVAQDGGDITFRGYRDGIVYLNMRGACSGCPSSTATLKHGIQNLLRHF 177 Query: 180 VPEVKDIRT 188 VPEV+++ Sbjct: 178 VPEVEEVEA 186 >gi|291225596|ref|XP_002732785.1| PREDICTED: GM13534-like [Saccoglossus kowalevskii] Length = 275 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 115/191 (60%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT +TPNP +LKFIPG VL G + F A+ A SPLA ++F I G+ SV+ G DF Sbjct: 65 MFIQTHETPNPNSLKFIPGVPVLGSGTMDFPTARVAHGSPLARQLFRIDGVKSVFLGPDF 124 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K D +W+ ++P V +M+ F +G PI+ + + D V Sbjct: 125 ITITKHDDDSEWKIIKPEVYAAVMDFFATGLPILTDEQPS-------ADTEIHPDDDETV 177 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIV+ G+ GIV L M+G+C+ CPS+ TLK GV N+L Sbjct: 178 AMIKELLDTRIRPTVQEDGGDIVYMGFEKGIVKLKMQGSCTSCPSSVVTLKSGVQNMLQF 237 Query: 179 FVPEVKDIRTV 189 +VPEV + V Sbjct: 238 YVPEVLSVEQV 248 >gi|116250169|ref|YP_766007.1| nifU iron-sulphur cluster scaffold protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254817|emb|CAK05891.1| putative nifU iron-sulphur cluster scaffold protein [Rhizobium leguminosarum bv. viciae 3841] Length = 188 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 101/188 (53%), Positives = 139/188 (73%), Gaps = 1/188 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPAT KF+PG+VV+ G F + +EA+ SPLA+R+F I G+ VYFGYDF Sbjct: 1 MFIQTEATPNPATQKFLPGKVVMENGTAEFRSTEEAQASPLAARLFEISGVTGVYFGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 I+V KD DW+HL+P +LG IMEHF+SG P++ + + D D ++V Sbjct: 61 ISVSKDNADWQHLKPAILGSIMEHFMSGKPVMGDASILSEDADADDEFFDE-GDESIVLT 119 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+L+ RVRPAVA+DGGDI F+G++DG V+L+M+G+C+GCPS++ TLK+GV N+L HFV Sbjct: 120 IKELLETRVRPAVAQDGGDITFRGFKDGKVYLNMKGSCAGCPSSTATLKHGVQNLLRHFV 179 Query: 181 PEVKDIRT 188 PEV+++ Sbjct: 180 PEVQEVIA 187 >gi|281346707|gb|EFB22291.1| hypothetical protein PANDA_002901 [Ailuropoda melanoleuca] Length = 186 Score = 268 bits (685), Expect = 3e-70, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 118/191 (61%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 4 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 63 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ E D VV Sbjct: 64 ITVTKESEELDWNLLKPDIYATIMDFFASGLPLVTEETSSGEAG--------SEEDDEVV 115 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 116 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 175 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 176 YIPEVEGVEQV 186 >gi|307942729|ref|ZP_07658074.1| putative NFU1 iron-sulfur cluster scaffold-like protein [Roseibium sp. TrichSKD4] gi|307773525|gb|EFO32741.1| putative NFU1 iron-sulfur cluster scaffold-like protein [Roseibium sp. TrichSKD4] Length = 186 Score = 268 bits (685), Expect = 3e-70, Method: Composition-based stats. Identities = 105/190 (55%), Positives = 146/190 (76%), Gaps = 5/190 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VVL G F++ EA SPLA ++F +PG+A+++FGYDF Sbjct: 1 MFIQTEATPNPATLKFLPGRVVLETGTYDFTSPTEAGASPLAEKLFQVPGVAAIFFGYDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV K + DW+H++P +LG IME F+SG P++ +G D + + F E+D V Sbjct: 61 ITVTKKEDTDWQHMKPAILGAIMEQFMSGQPVMASGQAEDTEEGE----FFEEADQETVT 116 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IK++LD RVRPAVA+DGGDI FKG+++GIV+LSMRGAC+GCPS++ TL++G+ N+L HF Sbjct: 117 VIKDLLDTRVRPAVAQDGGDITFKGFKEGIVYLSMRGACAGCPSSTATLQHGIQNLLKHF 176 Query: 180 VPEVKDIRTV 189 VPEV+++R + Sbjct: 177 VPEVQEVRPI 186 >gi|195059008|ref|XP_001995543.1| GH17809 [Drosophila grimshawi] gi|263505270|sp|B4JWR9|NFU1_DROGR RecName: Full=NFU1 iron-sulfur cluster scaffold homolog, mitochondrial; Flags: Precursor gi|193896329|gb|EDV95195.1| GH17809 [Drosophila grimshawi] Length = 298 Score = 268 bits (685), Expect = 3e-70, Method: Composition-based stats. Identities = 87/191 (45%), Positives = 119/191 (62%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G F +A A SPLA +F + G+ +V+FG D Sbjct: 79 MFIQTQDTPNPDSLKFLPGVEVLGKGNTYDFPSATAAHCSPLAKLLFRVEGVRAVFFGSD 138 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FIT+ K++ +W ++P V +IM+ F SG PI+H + +E D V Sbjct: 139 FITISKEENGEWGLIKPEVFAVIMDFFASGLPILHEARPN-------ADTEILEDDDETV 191 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF Y G+V L M+G+CS CPS+ TLK GV N+L Sbjct: 192 MMIKELLDTRIRPTVQEDGGDIVFISYEKGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 251 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 252 YIPEVESVEQV 262 >gi|18402817|ref|NP_566673.1| NFU4; structural molecule [Arabidopsis thaliana] gi|75273382|sp|Q9LIG6|NIFU4_ARATH RecName: Full=NifU-like protein 4, mitochondrial; Short=AtNfu-III; Short=AtNfu4; Flags: Precursor gi|13899085|gb|AAK48964.1|AF370537_1 Unknown protein [Arabidopsis thaliana] gi|9294004|dbj|BAB01907.1| unnamed protein product [Arabidopsis thaliana] gi|18377516|gb|AAL66924.1| unknown protein [Arabidopsis thaliana] gi|28207822|emb|CAD55561.1| NFU4 protein [Arabidopsis thaliana] gi|332642927|gb|AEE76448.1| NifU-like protein 4 [Arabidopsis thaliana] Length = 283 Score = 268 bits (685), Expect = 3e-70, Method: Composition-based stats. Identities = 87/191 (45%), Positives = 117/191 (61%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP++L F PG+ V+ G+ F N + A SPLA I+SI G+ V+FG DF Sbjct: 80 MFIQTQSTPNPSSLMFYPGKPVMEVGSADFPNVRSALGSPLAKSIYSIDGVVRVFFGSDF 139 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D W+ L+P + +M+ + SG P+ + K E DS V Sbjct: 140 VTVTKSDDVSWDILKPEIFAAVMDFYSSGQPLFLDSQAAAAK-----DTAISEDDSETVA 194 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI + G+ GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 195 MIKELLETRIRPAVQDDGGDIEYCGFDPESGIVKLRMQGACSGCPSSSVTLKSGIENMLM 254 Query: 178 HFVPEVKDIRT 188 H+V EVK + Sbjct: 255 HYVSEVKGVEQ 265 >gi|46201919|ref|ZP_00054106.2| COG0694: Thioredoxin-like proteins and domains [Magnetospirillum magnetotacticum MS-1] Length = 182 Score = 268 bits (685), Expect = 3e-70, Method: Composition-based stats. Identities = 101/190 (53%), Positives = 135/190 (71%), Gaps = 10/190 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG VV+ +G F+ A A SPLA+R+F+I G+ SV+ G DF Sbjct: 1 MFIQTEPTPNPATLKFLPGTVVMGQGTADFAEASRASGSPLATRLFAIEGVGSVFLGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV K D DW+ ++P VL IM+H+ SGDP+I+ G D D +V Sbjct: 61 ITVAKADSADWQVVKPQVLAAIMDHYNSGDPVINPGSEAASASGD---------DDGIVM 111 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI+F+ + DGIV+L ++GACSGCPS+S TLK+G+ N+L ++ Sbjct: 112 QIKELLDTRVRPAVAQDGGDIIFRAFEDGIVYLHLQGACSGCPSSSATLKHGIENMLKYY 171 Query: 180 VPEVKDIRTV 189 VPEV ++ V Sbjct: 172 VPEVMAVQAV 181 >gi|319406947|emb|CBI80584.1| NifU-related protein [Bartonella sp. 1-1C] Length = 190 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 101/189 (53%), Positives = 139/189 (73%), Gaps = 7/189 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNP TLKF+PG++VL +G + F N +EA + SPLA+++F+IP I SV+ GYD Sbjct: 1 MFIQTESTPNPTTLKFLPGRIVLPQGTLEFHNREEAAKNSPLAAKLFNIPNIKSVFLGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FIT+ K+ +W+HL+P +LG IMEHF+S DP+I + + F E D+ +V Sbjct: 61 FITITKNDGEWQHLKPAILGTIMEHFLSNDPVITT------ETNIPNKEFFDEKDTDIVI 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ RVRPAVA DGGDI F G+ +GIV+L+MRGAC+GCPS++ TLK+G+ N+L HF Sbjct: 115 VIKELLETRVRPAVANDGGDITFCGFENGIVYLNMRGACAGCPSSTATLKHGIENLLRHF 174 Query: 180 VPEVKDIRT 188 +PEV + Sbjct: 175 IPEVLGVEA 183 >gi|159465189|ref|XP_001690805.1| iron-sulfur cluster assembly protein [Chlamydomonas reinhardtii] gi|158279491|gb|EDP05251.1| iron-sulfur cluster assembly protein [Chlamydomonas reinhardtii] Length = 319 Score = 267 bits (684), Expect = 5e-70, Method: Composition-based stats. Identities = 87/189 (46%), Positives = 123/189 (65%), Gaps = 8/189 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +L F+PG+ V+ G + F +A+E SPLA ++F++ GI SV+FG DF Sbjct: 84 MFIQTQPTPNPNSLMFVPGKPVMQSGTMEFGSAREGMKSPLAKKLFAVDGITSVFFGSDF 143 Query: 61 ITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +T+ KD+Y W L+P V IME + SG+ +I + DS VV Sbjct: 144 VTITKKDEYSWPVLKPDVFAAIMEFYASGEALISDADAL-----AASDTAIHPDDSEVVA 198 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDIVFKG+ + G+V + + GACS CPS++ TLK G+ N+L Sbjct: 199 MIKELLETRIRPAVQEDGGDIVFKGFEEDTGMVQVKLVGACSTCPSSTVTLKNGIENMLM 258 Query: 178 HFVPEVKDI 186 H++PEVK + Sbjct: 259 HYIPEVKGV 267 >gi|66543732|ref|XP_395826.2| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like [Apis mellifera] Length = 275 Score = 267 bits (683), Expect = 5e-70, Method: Composition-based stats. Identities = 86/192 (44%), Positives = 121/192 (63%), Gaps = 10/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG +L +G F NA + SPLA +F I G+ SV+FG D Sbjct: 64 MFIQTQDTPNPNSLKFLPGVKILEQGQTKDFPNAIDGYCSPLAKMLFRIDGVKSVFFGPD 123 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 FIT+ K + +W+ L+P + +IM+ F SG P++ + + DS + Sbjct: 124 FITITKADEDVEWKLLKPEIFAVIMDFFASGLPVLTDEQPA-------ADTQISDDDSEI 176 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 VQ IKE+LD R+RP V DGGDIVF G+ +GIV L M+G+C+ CPS+ TLK GV N++ Sbjct: 177 VQMIKELLDTRIRPTVQEDGGDIVFMGFEEGIVKLKMQGSCTSCPSSVITLKNGVQNMMQ 236 Query: 178 HFVPEVKDIRTV 189 ++PEV + V Sbjct: 237 FYIPEVLGVVQV 248 >gi|83594860|ref|YP_428612.1| nitrogen-fixing NifU-like [Rhodospirillum rubrum ATCC 11170] gi|83577774|gb|ABC24325.1| Nitrogen-fixing NifU-like [Rhodospirillum rubrum ATCC 11170] Length = 183 Score = 267 bits (683), Expect = 5e-70, Method: Composition-based stats. Identities = 94/190 (49%), Positives = 133/190 (70%), Gaps = 9/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPA+LKF+PG+ VL G F++ A SPLA R+F+I G+ +Y G DF Sbjct: 1 MFIQTERTPNPASLKFLPGKAVLPGGGRDFADVGAAGPSPLARRLFAIDGVTGIYLGADF 60 Query: 61 ITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV K + DW+ ++P VLG IMEHF SG+P++ G + D VV+ Sbjct: 61 ITVSKAEAEDWQVIKPLVLGAIMEHFTSGEPVLIAGTAAESAGSA--------EDDEVVR 112 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +I+++L+ RVRPAVA+DGGDIVF ++DG+V+L +RG+CSGCPS++ TLK+G+ N+L H+ Sbjct: 113 QIRDLLETRVRPAVAQDGGDIVFDRFQDGVVYLHLRGSCSGCPSSTATLKHGIENMLRHY 172 Query: 180 VPEVKDIRTV 189 +PEV+ + V Sbjct: 173 IPEVEAVEAV 182 >gi|114108171|gb|AAI23134.1| Lpd-8 protein [Xenopus laevis] Length = 249 Score = 267 bits (683), Expect = 5e-70, Method: Composition-based stats. Identities = 83/191 (43%), Positives = 120/191 (62%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP ++KFIPG+ VL + F N A SPLA +F I G+ SV+FG DF Sbjct: 53 MFIQTQDTPNPNSVKFIPGRAVLDARTMDFPNPASAFCSPLARHLFRIEGVKSVFFGPDF 112 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K + DW ++P + IM+ F +G P++ + G E + VV Sbjct: 113 ITITKNGEDMDWNLIKPDIFATIMDFFSTGLPVVTDEAP-------RGDPAASEEEDEVV 165 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG++DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 166 AMIKELLDTRIRPTVQEDGGDVLYKGFQDGIVQLKLQGSCTSCPSSIITLKSGIQNMLQF 225 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 226 YIPEVEGVEQV 236 >gi|6013069|emb|CAB57314.1| HIRA-interacting protein (HIRIP5) [Mus musculus] gi|17390830|gb|AAH18355.1| NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) [Mus musculus] Length = 199 Score = 267 bits (683), Expect = 5e-70, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 119/191 (62%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 1 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 60 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ + E D VV Sbjct: 61 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTE------ETPPPPGEAGSEEDDEVV 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++++G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 115 AMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF 174 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 175 YIPEVEGVEQV 185 >gi|315122122|ref|YP_004062611.1| nitrogen fixation protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495524|gb|ADR52123.1| nitrogen fixation protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 190 Score = 267 bits (683), Expect = 6e-70, Method: Composition-based stats. Identities = 156/190 (82%), Positives = 171/190 (90%), Gaps = 1/190 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKFIPGQVVLV G++HFSNAKEA ISPLASRIFSI GI SVY GYDF Sbjct: 1 MFIQTEYTPNPATLKFIPGQVVLVRGSVHFSNAKEAGISPLASRIFSISGIVSVYLGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKL-DDMGSGDFIESDSAVVQ 119 ITV KD+YDWE L+P +LG+IMEHF+SGDPII NGGL + + DD+G GDF ESDS +VQ Sbjct: 61 ITVAKDKYDWEQLKPLILGVIMEHFMSGDPIISNGGLDAVNVNDDLGEGDFSESDSVIVQ 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IK+VLDNRVRPAVARDGGDIVFKGYRDGIVFLSM GACSGCPSA+ETLKYGV N+LNHF Sbjct: 121 KIKDVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMMGACSGCPSATETLKYGVINLLNHF 180 Query: 180 VPEVKDIRTV 189 VPEVKDIRTV Sbjct: 181 VPEVKDIRTV 190 >gi|146326964|gb|AAI41716.1| Lpd-8 protein [Xenopus laevis] Length = 250 Score = 267 bits (682), Expect = 6e-70, Method: Composition-based stats. Identities = 83/191 (43%), Positives = 120/191 (62%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP ++KFIPG+ VL + F N A SPLA +F I G+ SV+FG DF Sbjct: 54 MFIQTQDTPNPNSVKFIPGRAVLDARTMDFPNPASAFCSPLARHLFRIEGVKSVFFGPDF 113 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K + DW ++P + IM+ F +G P++ + G E + VV Sbjct: 114 ITITKNGEDMDWNLIKPDIFATIMDFFSTGLPVVTDEAP-------RGDPAASEEEDEVV 166 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG++DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 167 AMIKELLDTRIRPTVQEDGGDVLYKGFQDGIVQLKLQGSCTSCPSSIITLKSGIQNMLQF 226 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 227 YIPEVEGVEQV 237 >gi|195132295|ref|XP_002010579.1| GI14603 [Drosophila mojavensis] gi|193909029|gb|EDW07896.1| GI14603 [Drosophila mojavensis] Length = 259 Score = 267 bits (682), Expect = 7e-70, Method: Composition-based stats. Identities = 87/191 (45%), Positives = 120/191 (62%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G F + A SPLA +F + G+ +V+FG D Sbjct: 40 MFIQTQDTPNPDSLKFLPGVEVLGKGNTYDFPSGAAAHCSPLAKLLFRVEGVRAVFFGGD 99 Query: 60 FITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FIT+ K++ +W ++P V +IM+ F SG PI+H + +E D V Sbjct: 100 FITISKEESGEWGLIKPEVFAIIMDFFASGLPILHEARAN-------ADTEILEDDDETV 152 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIVF GY +G+V L M+G+CS CPS+ TLK GV N+L Sbjct: 153 MMIKELLDTRIRPTVQEDGGDIVFMGYENGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 212 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 213 YIPEVESVEQV 223 >gi|192288888|ref|YP_001989493.1| Scaffold protein Nfu/NifU [Rhodopseudomonas palustris TIE-1] gi|192282637|gb|ACE99017.1| Scaffold protein Nfu/NifU [Rhodopseudomonas palustris TIE-1] Length = 188 Score = 267 bits (682), Expect = 7e-70, Method: Composition-based stats. Identities = 94/179 (52%), Positives = 136/179 (75%), Gaps = 2/179 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKFIPG+ VL G + F++A +A SPLA+R+F I G++ V++G DF Sbjct: 1 MFIQTEPTPNPATLKFIPGRRVLDSGTLEFTDASQAARSPLAARLFDIDGVSGVFYGTDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +TV KD+ +W+HL+P +LG IMEH++SG PI+ +G + ++D+ V+ Sbjct: 61 VTVTKDKGEWQHLKPAILGAIMEHYMSGTPILADGKSDGEDG--DDDEFYADADAETVEI 118 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IK++++ RVRPAVA DGGDI F+G++DGIV+L+MRGAC+GCPS++ TL++G+ N+L HF Sbjct: 119 IKDLIETRVRPAVANDGGDITFRGFKDGIVYLNMRGACAGCPSSTATLQHGIQNLLKHF 177 >gi|296533479|ref|ZP_06896057.1| NifU domain protein [Roseomonas cervicalis ATCC 49957] gi|296266192|gb|EFH12239.1| NifU domain protein [Roseomonas cervicalis ATCC 49957] Length = 187 Score = 266 bits (681), Expect = 8e-70, Method: Composition-based stats. Identities = 101/191 (52%), Positives = 133/191 (69%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE-GAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFI+TE TPNPATLKF+PGQ V+ G F+NA A SPLA R+F + G+A ++ G D Sbjct: 1 MFIETEATPNPATLKFLPGQDVMGSRGTADFTNAGAAARSPLAERLFGLEGVARIFLGSD 60 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K + +W+ L+P VLG IMEH ++G P++ + D D +D+ +V Sbjct: 61 FITVTKAEGVEWQALKPQVLGAIMEHVMAGRPVVLE------EEGDAALEDSDPADAEIV 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +IKE+LD RVRPAVA DGGDIVF+G+RDGIV L ++GACSGCPS+ TLK+GV N+L H Sbjct: 115 AQIKELLDTRVRPAVAGDGGDIVFRGFRDGIVKLHLQGACSGCPSSRATLKHGVENMLRH 174 Query: 179 FVPEVKDIRTV 189 +VPEV + V Sbjct: 175 YVPEVMAVEQV 185 >gi|70990736|ref|XP_750217.1| NifU-related protein [Aspergillus fumigatus Af293] gi|66847849|gb|EAL88179.1| NifU-related protein [Aspergillus fumigatus Af293] gi|159130693|gb|EDP55806.1| NifU-related protein [Aspergillus fumigatus A1163] Length = 326 Score = 266 bits (681), Expect = 9e-70, Method: Composition-based stats. Identities = 80/201 (39%), Positives = 120/201 (59%), Gaps = 12/201 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE+TPNP LKFIP VL EG + + + + SPLA+ +F++ G+ Sbjct: 85 IFIQTENTPNPDALKFIPNHRVLPEGFPTSFLEYLSPRSTLAPPHPSPLAANLFNVDGVT 144 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD-- 109 SV++G DFITV K +W H++P V +I + SG+ I++ + G + Sbjct: 145 SVFYGPDFITVNKSSDANWAHIKPEVFSLITQAVTSGEAIVNTVEKTGEHAQESGEQESL 204 Query: 110 -FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 F E D VV IKE+L+ R+RPA+ DGGDI +G+ +GIV L +RGAC C S++ TL Sbjct: 205 SFSEEDDEVVSMIKELLETRIRPAIQEDGGDIELRGFENGIVKLKLRGACRTCDSSTVTL 264 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ ++L H++ EV+ + V Sbjct: 265 KNGIESMLMHYIEEVQGVEQV 285 >gi|332813521|ref|XP_003309120.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial [Pan troglodytes] gi|5738608|emb|CAB53015.1| HIRA-interacting protein HIRIP5 [Homo sapiens] gi|62822279|gb|AAY14828.1| unknown [Homo sapiens] gi|189054196|dbj|BAG36716.1| unnamed protein product [Homo sapiens] Length = 196 Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 118/191 (61%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 1 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 60 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ E D VV Sbjct: 61 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAG--------SEEDDEVV 112 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 113 AMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQF 172 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 173 YIPEVEGVEQV 183 >gi|86747711|ref|YP_484207.1| nitrogen-fixing NifU-like [Rhodopseudomonas palustris HaA2] gi|86570739|gb|ABD05296.1| Nitrogen-fixing NifU-like [Rhodopseudomonas palustris HaA2] Length = 188 Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats. Identities = 97/179 (54%), Positives = 134/179 (74%), Gaps = 1/179 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKFIPG+VVL G + F++ +A SPLA R+F + G++ V++G DF Sbjct: 1 MFIQTEPTPNPATLKFIPGRVVLDSGTMEFTDRSQAARSPLAERLFDVDGVSGVFYGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +TV KD DW+HL+P +LG IMEH++SG PI+ +G D F E D+ V+ Sbjct: 61 VTVTKDGGDWQHLKPAILGAIMEHYMSGAPILADGKTDGDAG-DEDDEFFAERDAETVEI 119 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IK++++ RVRPAVA DGGDI F+G++DGIV+L+M+GACSGCPS++ TL++G+ N+L HF Sbjct: 120 IKDLIETRVRPAVANDGGDITFRGFKDGIVYLAMKGACSGCPSSTATLQHGIQNLLKHF 178 >gi|39933530|ref|NP_945806.1| NifU-like domain-containing protein [Rhodopseudomonas palustris CGA009] gi|39647376|emb|CAE25897.1| possible NifU-like domain (residues 119-187) [Rhodopseudomonas palustris CGA009] Length = 188 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 94/179 (52%), Positives = 136/179 (75%), Gaps = 2/179 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKFIPG+ VL G + F++A +A SPLA+R+F I G++ V++G DF Sbjct: 1 MFIQTEPTPNPATLKFIPGRSVLDSGTLEFTDASQAARSPLAARLFDIDGVSGVFYGTDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +TV KD+ +W+HL+P +LG IMEH++SG PI+ +G + ++D+ V+ Sbjct: 61 VTVTKDKGEWQHLKPAILGAIMEHYMSGTPILADGKSDGEDG--DDDEFYADADAETVEI 118 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IK++++ RVRPAVA DGGDI F+G++DGIV+L+MRGAC+GCPS++ TL++G+ N+L HF Sbjct: 119 IKDLIETRVRPAVANDGGDITFRGFKDGIVYLNMRGACAGCPSSTATLQHGIQNLLKHF 177 >gi|42562675|ref|NP_175550.2| NFU5; ATP binding / structural molecule [Arabidopsis thaliana] gi|75169527|sp|Q9C8J2|NIFU5_ARATH RecName: Full=NifU-like protein 5, mitochondrial; Short=AtNfu-I; Short=AtNfu5; Flags: Precursor gi|12325368|gb|AAG52627.1|AC024261_14 unknown protein; 90320-88994 [Arabidopsis thaliana] gi|28207824|emb|CAD55562.1| NFU5 protein [Arabidopsis thaliana] gi|105829764|gb|ABF74703.1| At1g51390 [Arabidopsis thaliana] gi|110741134|dbj|BAE98660.1| hypothetical protein [Arabidopsis thaliana] gi|332194540|gb|AEE32661.1| NifU-like protein 5 [Arabidopsis thaliana] Length = 275 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 119/191 (62%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP++L F PG+ V+ G+ F N++ A SPLA IF+I G+ V++G DF Sbjct: 75 MFIQTQSTPNPSSLMFSPGKPVMEIGSADFPNSRSAMSSPLAKAIFAIDGVVRVFYGSDF 134 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D W+ L+P + ++M+ + SG P+ + K E DS V Sbjct: 135 VTVTKSDDVTWDILKPDIFAVVMDFYSSGQPLFLDSQATAAK-----DTAIHEDDSETVA 189 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RP+V DGGDI + G+ GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 190 MIKELLETRIRPSVQDDGGDIEYCGFDTETGIVKLRMQGACSGCPSSSVTLKSGIENMLM 249 Query: 178 HFVPEVKDIRT 188 H+V EVK + Sbjct: 250 HYVSEVKGVEQ 260 >gi|27375911|ref|NP_767440.1| hypothetical protein bll0800 [Bradyrhizobium japonicum USDA 110] gi|27349049|dbj|BAC46065.1| bll0800 [Bradyrhizobium japonicum USDA 110] Length = 189 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 96/188 (51%), Positives = 138/188 (73%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKFIPG+VV+ + F++ + A SPLA ++F +PG+ V++G DF Sbjct: 1 MFIQTEATPNPATLKFIPGRVVVDGSPMEFASRESAARSPLAEKLFEVPGVTGVFYGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ITV K +W+ L+P +LG IMEH++SG P++ +G D F E+D+ V Sbjct: 61 ITVTKANGEWQQLKPAILGAIMEHYMSGAPLLADGAAQSDADLDDEDEFFDEADAETVDM 120 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IK++++ RVRPAVA DGGDI F+G++DGIV+L+M+GACSGCPS++ TL++G+ N+L HFV Sbjct: 121 IKDLIETRVRPAVANDGGDITFRGFKDGIVYLNMKGACSGCPSSTATLQHGIQNLLKHFV 180 Query: 181 PEVKDIRT 188 P+V ++R Sbjct: 181 PDVVEVRP 188 >gi|217979031|ref|YP_002363178.1| Scaffold protein Nfu/NifU [Methylocella silvestris BL2] gi|217504407|gb|ACK51816.1| Scaffold protein Nfu/NifU [Methylocella silvestris BL2] Length = 187 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 94/189 (49%), Positives = 133/189 (70%), Gaps = 2/189 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFI+TE TPNP TLKF+PG+ V+ G + ++A SPLA +F + G+ V+FG DF Sbjct: 1 MFIETETTPNPKTLKFLPGRPVMSAGTLDIKEPEDARQSPLAEALFELDGVKGVFFGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ITV DW+ L+P VLG IMEHF+SGDP+++ + D F ESD+ V Sbjct: 61 ITVTNANEDWQELKPTVLGAIMEHFLSGDPLLNE--HAHVSPDAGEREFFEESDAETVTA 118 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IK++++ VRPAVA DGGDI F+GYRDGIV+L+M+G+CSGCPS++ TLK+G+ N+L H+V Sbjct: 119 IKQLIETHVRPAVANDGGDIKFRGYRDGIVYLAMKGSCSGCPSSTATLKHGIQNLLKHYV 178 Query: 181 PEVKDIRTV 189 P+V+ + ++ Sbjct: 179 PDVQSVESI 187 >gi|209965893|ref|YP_002298808.1| NifU-like domain protein [Rhodospirillum centenum SW] gi|209959359|gb|ACI99995.1| NifU-like domain protein [Rhodospirillum centenum SW] Length = 186 Score = 265 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 96/190 (50%), Positives = 132/190 (69%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE+TPNPATLKF+PG+ VL G F+ + A SPLA+R+F + G+ V+ G DF Sbjct: 1 MFIQTEETPNPATLKFLPGRDVLGRGTADFAGPETAGPSPLAARLFEVEGVTRVFLGADF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + DW L+P VLG++MEHF +G P++ G D + + D VV Sbjct: 61 VTVTKTEDKDWYALKPSVLGVLMEHFTAGRPVLLEGTADDGHAEAANAEDEE-----VVA 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ G+V+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKELLDIRVRPAVAQDGGDITFHGFDKGVVYLHMKGACAGCPSSTATLKAGIENLLRHY 175 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 176 IPEVVEVRQV 185 >gi|77462766|ref|YP_352270.1| nitrogen-fixing NifU [Rhodobacter sphaeroides 2.4.1] gi|77387184|gb|ABA78369.1| Nitrogen-fixing NifU [Rhodobacter sphaeroides 2.4.1] Length = 186 Score = 264 bits (676), Expect = 3e-69, Method: Composition-based stats. Identities = 99/190 (52%), Positives = 133/190 (70%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ+VL G F+ A+ A SPLA RIF+ G+++V+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQMVLEAGTADFATAEAAATSPLARRIFAAGGVSAVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 + V K D+ W+H++P +LG IMEH+ SG P++ G D VV+ Sbjct: 61 VAVTKADEVAWDHIKPAILGAIMEHYQSGAPVLEGEQAAS------GHASHDGPDEDVVR 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ GIV+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 115 QIKELLDTRVRPAVAQDGGDITFHGFDRGIVYLHMQGACAGCPSSTLTLKMGIENLLRHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 175 IPEVLEVRPV 184 >gi|146278315|ref|YP_001168474.1| NifU domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145556556|gb|ABP71169.1| nitrogen-fixing NifU domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 186 Score = 264 bits (676), Expect = 4e-69, Method: Composition-based stats. Identities = 101/190 (53%), Positives = 133/190 (70%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ+VL G F++A+ A SPLA RIF G+ASV+FG DF Sbjct: 1 MFIQTESTPNPATLKFLPGQMVLEAGTADFASAEAAATSPLARRIFGAGGVASVFFGTDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I V K D+ W+H++P +LG IMEH+ SG P++ G D +V+ Sbjct: 61 IAVTKEDEVVWDHVKPAILGAIMEHYQSGAPVLEGEQAAS------GHATHDGPDEEIVR 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA+DGGDI F G+ GIV+L M+GAC+GCPS++ TLK G+ N+L H+ Sbjct: 115 QIKELLDTRVRPAVAQDGGDITFHGFDRGIVYLHMQGACAGCPSSTLTLKMGIENLLRHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 175 IPEVLEVRPV 184 >gi|297847512|ref|XP_002891637.1| hypothetical protein ARALYDRAFT_892107 [Arabidopsis lyrata subsp. lyrata] gi|297337479|gb|EFH67896.1| hypothetical protein ARALYDRAFT_892107 [Arabidopsis lyrata subsp. lyrata] Length = 274 Score = 264 bits (676), Expect = 4e-69, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 119/191 (62%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFI+T+ TPNP++L F PG+ V+ G+ F N++ A SPLA IF+I G+ V+FG DF Sbjct: 74 MFIETQSTPNPSSLMFNPGKPVMDIGSADFPNSRSAMGSPLAKAIFAIDGVVRVFFGSDF 133 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D W+ L+P + ++M+ + SG P+ + K E DS V Sbjct: 134 VTVTKSDDVTWDILKPDIFAVVMDFYSSGQPLFLDSQATAAK-----DTAIHEDDSETVA 188 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RP+V DGGDI + G+ GIV L M+GACSGCPS+S TLK G+ N+L Sbjct: 189 MIKELLETRIRPSVQDDGGDIEYCGFDTETGIVKLRMQGACSGCPSSSVTLKSGIENMLM 248 Query: 178 HFVPEVKDIRT 188 H+V EVK + Sbjct: 249 HYVSEVKGVEQ 259 >gi|299755866|ref|XP_001828936.2| NifU-like protein c [Coprinopsis cinerea okayama7#130] gi|298411416|gb|EAU92943.2| NifU-like protein c [Coprinopsis cinerea okayama7#130] Length = 291 Score = 264 bits (675), Expect = 4e-69, Method: Composition-based stats. Identities = 84/192 (43%), Positives = 120/192 (62%), Gaps = 5/192 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPN +LKFIPG V+ EG+ F + + A SPLA R+ I GI V++G DF Sbjct: 66 MFIQTESTPNEDSLKFIPGVPVMEEGSAEFLDTRSALASPLALRLMGIEGITGVFYGPDF 125 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + W ++P V ++ME F SG P+ + D + +++DS V Sbjct: 126 VTVSKSSDHPWAVVKPEVYALLMEFFSSGQPLFRSEE--DREAAGPQDTRILDTDSETVA 183 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ RVRPA+ DGGDI ++G+ DGIV + ++G+C GC S+S TLK G+ +L Sbjct: 184 MIKELLETRVRPAIMEDGGDIEYRGFDENDGIVRVKLKGSCRGCESSSVTLKSGIERMLM 243 Query: 178 HFVPEVKDIRTV 189 H+VPEVK + + Sbjct: 244 HYVPEVKGVEQI 255 >gi|157167461|ref|XP_001654807.1| hypothetical protein AaeL_AAEL002148 [Aedes aegypti] gi|108882432|gb|EAT46657.1| conserved hypothetical protein [Aedes aegypti] Length = 263 Score = 264 bits (675), Expect = 4e-69, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 120/191 (62%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G + F A SPLA +F I G+ SV+FG D Sbjct: 55 MFIQTQDTPNPDSLKFLPGVAVLEKGQTMDFPTQAAALCSPLAKLLFRIEGVRSVFFGAD 114 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+T+ K ++ +W ++P V +IM+ F SG P++ + MG E D V Sbjct: 115 FVTISKHEEAEWRLIKPEVFAVIMDFFASGLPVVTDAKP-------MGDTQINEDDDETV 167 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 Q IKE+LD+++RP V DGGDI+F + DG+V L M+G+CS CPS+ TLK GV N+L Sbjct: 168 QMIKELLDSKIRPTVQEDGGDIIFMAFEDGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 227 Query: 179 FVPEVKDIRTV 189 ++PEV + V Sbjct: 228 YIPEVVAVEQV 238 >gi|288959669|ref|YP_003450010.1| thioredoxin [Azospirillum sp. B510] gi|288911977|dbj|BAI73466.1| thioredoxin [Azospirillum sp. B510] Length = 185 Score = 264 bits (675), Expect = 4e-69, Method: Composition-based stats. Identities = 93/190 (48%), Positives = 130/190 (68%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ VL G F+ ++A SPLA R+F I G+ V+ G DF Sbjct: 1 MFIQTEQTPNPATLKFLPGRDVLGRGTADFTGREDAARSPLAQRLFEIEGVVGVFLGADF 60 Query: 61 ITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 IT+ K DW L+P +LG+IMEHF + P++ G + +V+ Sbjct: 61 ITITKTDARDWFLLKPSILGVIMEHFTADRPVLLEEGGDGHAAAASADDEE------IVE 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRP+VA+DGGDI F+G+ G+V+L+M+GACSGCPS++ TLK+G+ N+L H+ Sbjct: 115 QIKELLDTRVRPSVAQDGGDITFQGFERGVVYLAMKGACSGCPSSTATLKHGIENMLRHY 174 Query: 180 VPEVKDIRTV 189 +PEV ++R V Sbjct: 175 IPEVVEVRAV 184 >gi|164657977|ref|XP_001730114.1| hypothetical protein MGL_2496 [Malassezia globosa CBS 7966] gi|159104009|gb|EDP42900.1| hypothetical protein MGL_2496 [Malassezia globosa CBS 7966] Length = 276 Score = 264 bits (675), Expect = 5e-69, Method: Composition-based stats. Identities = 78/193 (40%), Positives = 119/193 (61%), Gaps = 8/193 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPN +LKF+PG V+ +G F + + + SPLA +F++ G++ V++G DF Sbjct: 56 MFIQTESTPNEDSLKFLPGCRVMEKGTAEFLDQRSSMTSPLAKDLFALDGVSGVFYGPDF 115 Query: 61 ITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV KD W ++P V +ME F +G + + D +++DS VV Sbjct: 116 VTVTKDTDTPWSAIKPEVYSTMMEFFTAGHSLFPDPSSAQPGSD----TTILDTDSEVVA 171 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY---RDGIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+LD RVRPA+ DGGD+ ++G+ DGIV + ++G+C GC S++ TLK G+ +L Sbjct: 172 MIKELLDTRVRPAIQEDGGDLEYRGFGEDSDGIVRVKLKGSCRGCDSSTVTLKSGIERML 231 Query: 177 NHFVPEVKDIRTV 189 H+VPEV+ + V Sbjct: 232 MHYVPEVQGVEQV 244 >gi|67633331|gb|AAY78582.1| predicted thioredoxin-like protein [uncultured bacterium MedeBAC82F10] Length = 185 Score = 263 bits (674), Expect = 6e-69, Method: Composition-based stats. Identities = 97/190 (51%), Positives = 131/190 (68%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MF+QTE TPNPATLKF+PG+ V+ EG I F N A SPLA +F+I G+ SV+FG DF Sbjct: 1 MFVQTEPTPNPATLKFLPGREVMKEGTIFFQNQDSAVNSPLAQNLFNIKGVESVFFGSDF 60 Query: 61 ITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 IT+ K + +W ++P +LG I+EHF P+I + E+DS VV+ Sbjct: 61 ITITKAEANEWTLMKPAILGCIIEHFTMNKPVISKQAP-------RTEHTYDENDSDVVK 113 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD +VRPAVA DGGDI+F Y +GIVFL M+GAC GCPS++ TLK G+ N+L H+ Sbjct: 114 KIKELLDTKVRPAVAMDGGDIIFDKYNEGIVFLQMQGACQGCPSSTATLKMGIENMLKHY 173 Query: 180 VPEVKDIRTV 189 +PEV+++R V Sbjct: 174 IPEVREVRPV 183 >gi|158288625|ref|XP_310479.4| AGAP000598-PA [Anopheles gambiae str. PEST] gi|157018658|gb|EAA06366.4| AGAP000598-PA [Anopheles gambiae str. PEST] Length = 226 Score = 263 bits (673), Expect = 8e-69, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 120/191 (62%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL +G + F + A+ SPLA +F + G+ +V+FG D Sbjct: 11 MFIQTQDTPNPDSLKFLPGVPVLEKGQTMDFPSVSAAQCSPLAKLLFRVEGVRAVFFGGD 70 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+T+ K + +W ++P V +IM+ F SG P++ + F E D V Sbjct: 71 FVTISKQEDAEWRIIKPEVFAVIMDFFASGLPVVTDAKPN-------PDTQFNEDDDETV 123 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 Q IKE+LD R+RP V DGGDI+F G+ DG+V L M+G+CS CPS+ TLK GV N+L Sbjct: 124 QMIKELLDTRIRPTVQEDGGDIIFMGFDDGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 183 Query: 179 FVPEVKDIRTV 189 ++PEV + V Sbjct: 184 YIPEVVSVEQV 194 >gi|224097626|ref|XP_002311017.1| predicted protein [Populus trichocarpa] gi|222850837|gb|EEE88384.1| predicted protein [Populus trichocarpa] Length = 198 Score = 263 bits (673), Expect = 9e-69, Method: Composition-based stats. Identities = 89/191 (46%), Positives = 120/191 (62%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +L F PG+ ++ G+ F NA+ A SPLA I+ I GI V+FG DF Sbjct: 4 MFIQTQSTPNPLSLMFHPGKPIMDVGSADFPNARSAMNSPLAKSIYEIDGITRVFFGSDF 63 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D WE L P + IM+ + SG+P+ + K E DS V Sbjct: 64 VTVTKSDDASWEFLEPEIFAAIMDFYSSGEPLFQDSKTASAK-----DTAISEDDSETVT 118 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ + G+V L+M+GACSGCPS+S TLK G+ N+L Sbjct: 119 MIKELLETRIRPAVQDDGGDIEYRGFDEETGVVKLTMQGACSGCPSSSVTLKSGIENMLM 178 Query: 178 HFVPEVKDIRT 188 H+VPEVK + Sbjct: 179 HYVPEVKGVEQ 189 >gi|304393809|ref|ZP_07375734.1| putative NFU1 iron-sulfur cluster scaffold-like protein [Ahrensia sp. R2A130] gi|303294008|gb|EFL88383.1| putative NFU1 iron-sulfur cluster scaffold-like protein [Ahrensia sp. R2A130] Length = 190 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 102/191 (53%), Positives = 140/191 (73%), Gaps = 4/191 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PGQ V G FS+A +AE SPLA+ +F+IP ++ V+FGYD Sbjct: 1 MFIQTEATPNPATLKFLPGQTVAENGPFEFSDAVDAEDRSPLAAGLFAIPSVSGVFFGYD 60 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+T+ K D DW+H++P VLG+IMEHF+SG P+++ G ++ G E +V Sbjct: 61 FVTITKNDTADWQHVKPAVLGVIMEHFMSGAPVMNADAAGGTEV--APEGFVEEGSEEIV 118 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+L+ RVRPAVA+DGGDI F G++DG V+L MRGAC+GCPS++ TL++G+ N+L H Sbjct: 119 STIKELLETRVRPAVAQDGGDITFHGFKDGRVYLKMRGACAGCPSSTATLQHGIQNLLKH 178 Query: 179 FVPEVKDIRTV 189 F+PEV+ + V Sbjct: 179 FIPEVEAVEAV 189 >gi|91974729|ref|YP_567388.1| nitrogen-fixing NifU-like [Rhodopseudomonas palustris BisB5] gi|91681185|gb|ABE37487.1| nitrogen-fixing NifU-like [Rhodopseudomonas palustris BisB5] Length = 188 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 97/180 (53%), Positives = 138/180 (76%), Gaps = 3/180 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKFIPG+VVL G + F++ K+A SPLA R+F + G++ V++G DF Sbjct: 1 MFIQTEPTPNPATLKFIPGRVVLDSGTMEFTDRKQAARSPLAERLFEVEGVSGVFYGSDF 60 Query: 61 ITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV KD DW+HL+P +LG IMEH++SG PI+ +G + + D+ F E D+ V+ Sbjct: 61 VTVTKDGAGDWQHLKPAILGAIMEHYMSGAPIMADGRVDGDETDE--DEFFAERDAETVE 118 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IK++++ RVRPAVA DGGDI F+G++DG+V+L+M+GACSGCPS++ TL++G+ N+L HF Sbjct: 119 IIKDLIETRVRPAVANDGGDITFRGFKDGVVYLAMKGACSGCPSSTATLQHGIQNLLKHF 178 >gi|119496847|ref|XP_001265197.1| NifU-related protein [Neosartorya fischeri NRRL 181] gi|119413359|gb|EAW23300.1| NifU-related protein [Neosartorya fischeri NRRL 181] Length = 326 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 79/201 (39%), Positives = 119/201 (59%), Gaps = 12/201 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE----GAIHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE+TPNP LKFIP VL E + + + + SPLA+ +F++ G+ Sbjct: 85 IFIQTENTPNPDALKFIPNHRVLPEDFPTSFLEYLSPRSTLAPPHPSPLAANLFNVDGVT 144 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD-- 109 SV++G DFITV K +W H++P V +I + SG+ I++ + G + Sbjct: 145 SVFYGPDFITVSKSSDANWAHIKPEVFSLITQAVTSGEAIVNTVEKTGEHAQEGGEEESL 204 Query: 110 -FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 F E D VV IKE+L+ R+RPA+ DGGDI +G+ +GIV L +RGAC C S++ TL Sbjct: 205 SFNEEDDEVVSMIKELLETRIRPAIQEDGGDIELRGFENGIVKLKLRGACRTCDSSTVTL 264 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ ++L H++ EV+ + V Sbjct: 265 KNGIESMLMHYIEEVQGVEQV 285 >gi|319405374|emb|CBI78993.1| NifU-related protein [Bartonella sp. AR 15-3] Length = 190 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 101/189 (53%), Positives = 140/189 (74%), Gaps = 7/189 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYD 59 MFIQTE+TPNP TLKF+PG++VL +G + F N +EA + SPLA+++F+IP I SV+ GYD Sbjct: 1 MFIQTENTPNPTTLKFLPGRIVLSQGVLEFHNREEAAKNSPLAAKLFNIPNIKSVFLGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 FIT+ K+ +W+HL+P +LG IMEHF+S DP+I ++ F E D+ +V Sbjct: 61 FITITKNDGEWKHLKPAILGTIMEHFLSNDPVITT------EVHISDKEFFDEKDTDIVV 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ RVRPAVA DGGDI F G+ +GIV+L+MRGAC+GCPS++ TLK+G+ N+L HF Sbjct: 115 VIKELLETRVRPAVANDGGDITFCGFANGIVYLNMRGACAGCPSSTATLKHGIENLLRHF 174 Query: 180 VPEVKDIRT 188 +PEV + Sbjct: 175 IPEVLGVEA 183 >gi|121702857|ref|XP_001269693.1| NifU-related protein [Aspergillus clavatus NRRL 1] gi|119397836|gb|EAW08267.1| NifU-related protein [Aspergillus clavatus NRRL 1] Length = 320 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 79/201 (39%), Positives = 119/201 (59%), Gaps = 12/201 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE----GAIHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE+TPNP LKFIP VL E + + + + SPLA+ +F++ G+ Sbjct: 79 IFIQTENTPNPDALKFIPNHRVLPEEFPTSFLEYLSPRSTLAPPHPSPLAANLFNVEGVT 138 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD-- 109 SV++G DFITV K +W H++P V +I + SG+ I++ + G D Sbjct: 139 SVFYGPDFITVTKSSDANWAHIKPEVFSLITQAVTSGETIVNTVEKSGEHAQEGGEQDSL 198 Query: 110 -FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 F E D V+ IKE+L+ R+RPA+ DGGDI +G+ +GIV L +RGAC C S++ TL Sbjct: 199 SFNEEDDEVIGMIKELLETRIRPAIQEDGGDIELRGFENGIVKLKLRGACRTCDSSTVTL 258 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ ++L H++ EV+ + V Sbjct: 259 KNGIESMLMHYIEEVQGVEQV 279 >gi|220924300|ref|YP_002499602.1| Scaffold protein Nfu/NifU [Methylobacterium nodulans ORS 2060] gi|219948907|gb|ACL59299.1| Scaffold protein Nfu/NifU [Methylobacterium nodulans ORS 2060] Length = 187 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 101/191 (52%), Positives = 140/191 (73%), Gaps = 6/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP TLKF+PG+VVL EG + +A SPLA +F++PG+A VYFG+DF Sbjct: 1 MFIQTEATPNPTTLKFLPGRVVLTEGTFEARSPDQAARSPLAQALFAVPGVAGVYFGHDF 60 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 I+V K D +W ++P VLG IMEHF+SG P++ G G+ ++ F E+D+ V Sbjct: 61 ISVTKAEDGPEWPQVKPAVLGAIMEHFLSGAPVLEAGAAGEGTSEE----FFEEADADTV 116 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IK++L+ RVRPAVA DGGDI F+GYR+G+V+L M+GACSGCPS++ TL+ GV N+ H Sbjct: 117 ATIKDLLETRVRPAVAGDGGDITFRGYREGVVYLEMKGACSGCPSSTATLRQGVQNLFRH 176 Query: 179 FVPEVKDIRTV 189 F+PEV+++++V Sbjct: 177 FLPEVREVQSV 187 >gi|312113945|ref|YP_004011541.1| Scaffold protein Nfu/NifU [Rhodomicrobium vannielii ATCC 17100] gi|311219074|gb|ADP70442.1| Scaffold protein Nfu/NifU [Rhodomicrobium vannielii ATCC 17100] Length = 184 Score = 262 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 103/190 (54%), Positives = 139/190 (73%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEI-SPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+ VL EG F + +AE SPLA+R+F + G+ +V+ G D Sbjct: 1 MFIQTEMTPNPATLKFLPGRTVLEEGTREFLTSDDAEGVSPLAARLFEVEGVTAVFLGSD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 F++V KD+ DWE L+PPVLG+IMEHF+SG P++ + D + VV Sbjct: 61 FVSVTKDRGDWESLKPPVLGVIMEHFMSGQPVLSDERHVAEDEDFDDADK------EVVT 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+++ RVRPAVA DGGDI FKG+RDG+V+L M+GACSGCPSA+ TL++G+ N+L HF Sbjct: 115 TIKELIETRVRPAVANDGGDITFKGFRDGVVYLKMQGACSGCPSATATLRHGIENLLKHF 174 Query: 180 VPEVKDIRTV 189 VPEV++++ V Sbjct: 175 VPEVQEVQPV 184 >gi|16124317|ref|NP_418881.1| NifU-like domain-containing protein [Caulobacter crescentus CB15] gi|13421157|gb|AAK22049.1| NifU-like domain protein [Caulobacter crescentus CB15] Length = 224 Score = 261 bits (668), Expect = 3e-68, Method: Composition-based stats. Identities = 96/191 (50%), Positives = 127/191 (66%), Gaps = 6/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP LKF+PG+ VL +GA F +E + SPLA +F + ++ V+FG DF Sbjct: 35 MFIQTETTPNPEVLKFLPGREVLGDGAREFRTPEEGDASPLAKALFELGDVSRVFFGPDF 94 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + W HL+ P+L IM+HF SG P++ + D+ GD+ E S +V Sbjct: 95 LTVTKGEDAQWPHLKAPILAAIMDHFTSGRPLLLDQTAESGGHDE---GDYDEETSQIVA 151 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+LD R+RPAVA+DGGDIVF + G+V+L MRGACSGCPS+S TLK GV N+L Sbjct: 152 EIKELLDTRIRPAVAQDGGDIVFSRFEPQTGVVWLHMRGACSGCPSSSATLKSGVENMLK 211 Query: 178 HFVPEVKDIRT 188 H+VPEV + Sbjct: 212 HYVPEVTRVEQ 222 >gi|103487552|ref|YP_617113.1| nitrogen-fixing NifU-like protein [Sphingopyxis alaskensis RB2256] gi|98977629|gb|ABF53780.1| nitrogen-fixing NifU-like protein [Sphingopyxis alaskensis RB2256] Length = 190 Score = 261 bits (667), Expect = 4e-68, Method: Composition-based stats. Identities = 86/190 (45%), Positives = 132/190 (69%), Gaps = 1/190 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M I+TE TPNPATLKF+PG+ V+ G F++A+EAE SPLAS +FS+ + V+FG DF Sbjct: 1 MLIETESTPNPATLKFLPGRTVMETGTRDFASAEEAEASPLASALFSLGDVTGVFFGRDF 60 Query: 61 ITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ++V +W ++P VLG++M+HF++G P+ + G + +D+ +++ Sbjct: 61 VSVTIAPGAEWADVKPDVLGIVMDHFLAGVPLFNAASAGSAVPPEDAGFADDPADADIIE 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+++ RVRPAVA DGGDIV++G+ G V+L M+GAC+GCPS++ TLK G+ ++L H+ Sbjct: 121 QIKELIETRVRPAVANDGGDIVYRGFDKGNVYLKMQGACAGCPSSTATLKNGIESLLKHY 180 Query: 180 VPEVKDIRTV 189 VPEV + V Sbjct: 181 VPEVTAVHAV 190 >gi|4680705|gb|AAD27742.1|AF132967_1 CGI-33 protein [Homo sapiens] Length = 231 Score = 260 bits (666), Expect = 5e-68, Method: Composition-based stats. Identities = 84/192 (43%), Positives = 116/192 (60%), Gaps = 11/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYF-GYD 59 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+F Sbjct: 35 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFWDQI 94 Query: 60 FITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 FITV K+ + DW L+P + IM+ F SG P++ E D V Sbjct: 95 FITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPPGEAG--------SEEDDEV 146 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 147 VAMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQ 206 Query: 178 HFVPEVKDIRTV 189 ++PEV+ + V Sbjct: 207 FYIPEVEGVEQV 218 >gi|75674208|ref|YP_316629.1| nitrogen-fixing NifU [Nitrobacter winogradskyi Nb-255] gi|74419078|gb|ABA03277.1| nitrogen-fixing NifU [Nitrobacter winogradskyi Nb-255] Length = 190 Score = 260 bits (666), Expect = 5e-68, Method: Composition-based stats. Identities = 93/180 (51%), Positives = 134/180 (74%), Gaps = 1/180 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ VL +G + F++A SPLA ++F++ G+A V++G DF Sbjct: 1 MFIQTEITPNPATLKFLPGRTVLGKGTMEFTSASTTARSPLAVKLFAVHGVAGVFYGSDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV KD+ DW+HL+P +LG+IMEH+++G P++ +G D F E+D+ V Sbjct: 61 ITVTKDEGSDWQHLKPAILGVIMEHYMAGAPLLADGEGCSEANADSDVEFFDEADAETVT 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IK++++ RVRP VA DGGDI F+G+RDGIV+++M+GACSGCPS++ TL+ G+ N+L HF Sbjct: 121 LIKDLIETRVRPGVADDGGDITFRGFRDGIVYVNMKGACSGCPSSTVTLRNGIQNLLKHF 180 >gi|307108001|gb|EFN56242.1| hypothetical protein CHLNCDRAFT_48753 [Chlorella variabilis] Length = 209 Score = 260 bits (666), Expect = 5e-68, Method: Composition-based stats. Identities = 90/191 (47%), Positives = 125/191 (65%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNPA+L FIPGQ VL G+ F++A+EA SPLA ++F+I G+ V+FG DF Sbjct: 1 MFIQTQPTPNPASLMFIPGQKVLEGGSKSFTSAREAMASPLAKKLFAIDGVTQVFFGSDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + Y W L+P V IM+H+ SG+ + ++ + E D VV Sbjct: 61 VTVTKSEDYGWAVLKPDVFAAIMDHYSSGEALFYDE-----QDTGAAEHMIHEDDDEVVA 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDIVF+ + G+V L M GACSGCPS++ TLK G+ N+L Sbjct: 116 MIKELLETRIRPAVQEDGGDIVFRTWDPESGVVKLKMMGACSGCPSSAVTLKSGIENMLM 175 Query: 178 HFVPEVKDIRT 188 H++PEV+ + Sbjct: 176 HYIPEVRGVEE 186 >gi|118403546|ref|NP_001072356.1| NFU1 iron-sulfur cluster scaffold homolog [Xenopus (Silurana) tropicalis] gi|111307911|gb|AAI21453.1| HIRA interacting protein 5 [Xenopus (Silurana) tropicalis] Length = 199 Score = 260 bits (665), Expect = 6e-68, Method: Composition-based stats. Identities = 82/191 (42%), Positives = 119/191 (62%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP ++KFIPG+ VL + F + A SPLA +F I G+ SV+ G DF Sbjct: 1 MFIQTQDTPNPNSVKFIPGRAVLDARTMDFPSPASAFCSPLARHLFRIDGVKSVFLGPDF 60 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K ++ DW ++P + IM+ F SG P++ G E + VV Sbjct: 61 ITITKNSEELDWNLIKPDIYATIMDFFASGLPVVTEDAP-------RGDAAASEEEDEVV 113 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD+++KG++DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 114 AMIKELLDTRIRPTVQEDGGDVLYKGFQDGIVQLKLQGSCTSCPSSIITLKSGIQNMLQF 173 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 174 YIPEVEGVEQV 184 >gi|294085162|ref|YP_003551922.1| nitrogen-fixing NifU domain-containing protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664737|gb|ADE39838.1| nitrogen-fixing NifU domain protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 187 Score = 260 bits (665), Expect = 6e-68, Method: Composition-based stats. Identities = 96/189 (50%), Positives = 125/189 (66%), Gaps = 6/189 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNPATLKFIPG VL +G F A A SP+A R+F + G+A V+ G DF Sbjct: 1 MFIQTQDTPNPATLKFIPGVPVLEQGTADFPAADSAGSSPMARRLFQVDGVAGVFLGGDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I V K D+ DW L+P +L IMEHF SG P+I + + D V+ Sbjct: 61 IAVTKVDEMDWFALKPSILAGIMEHFASGLPVIEDNAGNMTDANTDDDEDDDT-----VK 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IK +LD RVRPAVA DGGDIVF+ + DG+V L MRGAC GCPS++ TLK G+ N+L H+ Sbjct: 116 QIKHLLDTRVRPAVAMDGGDIVFQDFDDGVVTLQMRGACQGCPSSTATLKMGIENMLKHY 175 Query: 180 VPEVKDIRT 188 +P+V+++R Sbjct: 176 IPQVREVRA 184 >gi|197106919|ref|YP_002132296.1| thioredoxin-like protein [Phenylobacterium zucineum HLK1] gi|196480339|gb|ACG79867.1| thioredoxin-like protein [Phenylobacterium zucineum HLK1] Length = 191 Score = 260 bits (665), Expect = 7e-68, Method: Composition-based stats. Identities = 98/191 (51%), Positives = 129/191 (67%), Gaps = 6/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP LKF+PG+ VL EG F + +EA+ SPLA+ IF I G+ V+FG DF Sbjct: 1 MFIQTEATPNPEVLKFLPGRAVLGEGTRDFGSMEEAQASPLAADIFDIEGVTRVFFGPDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TVGK +DW HL+ PVL IM+HF SG P+ G D+ G + + +V Sbjct: 61 LTVGKHPSFDWPHLKAPVLAAIMDHFTSGRPLFAEAGEQAGGHDE---GAYEGETAQIVA 117 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANILN 177 IK++LD R+RPAVA+DGGDI+F + G+V+L+MRGACSGCPS++ TLK GV N+L Sbjct: 118 EIKDLLDTRIRPAVAQDGGDILFHKFEPDTGVVWLNMRGACSGCPSSTATLKAGVENMLK 177 Query: 178 HFVPEVKDIRT 188 H+VPEV + Sbjct: 178 HYVPEVTRVEQ 188 >gi|242802633|ref|XP_002484010.1| NifU-related protein [Talaromyces stipitatus ATCC 10500] gi|218717355|gb|EED16776.1| NifU-related protein [Talaromyces stipitatus ATCC 10500] Length = 321 Score = 260 bits (664), Expect = 9e-68, Method: Composition-based stats. Identities = 80/203 (39%), Positives = 121/203 (59%), Gaps = 14/203 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE TPNP LKF+P VL E + + + + SPLA+++ ++ G++ Sbjct: 81 IFIQTESTPNPDALKFLPNHRVLPENFPTPFLEYLSPRSTLAPPHPSPLAAKLLNVEGVS 140 Query: 53 SVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG--- 108 SV++G DFITV K +W H++P V +I E SG+PI++ D G Sbjct: 141 SVFYGPDFITVTKQSDVNWAHIKPEVFSLITEVVTSGEPIVNTVERTSGAQDAQEGGGED 200 Query: 109 --DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + E D VV IKE+L+ R+RPA+ DGGDI F+G+ +GIV L +RGAC C S++ Sbjct: 201 TLSYNEEDDEVVGMIKELLETRIRPAIQEDGGDIEFRGFENGIVLLKLRGACRTCDSSTV 260 Query: 167 TLKYGVANILNHFVPEVKDIRTV 189 TLK G+ ++L H++ EV+ ++ V Sbjct: 261 TLKNGIESMLMHYIEEVQGVQQV 283 >gi|92115649|ref|YP_575378.1| nitrogen-fixing NifU-like [Nitrobacter hamburgensis X14] gi|91798543|gb|ABE60918.1| nitrogen-fixing NifU-like protein [Nitrobacter hamburgensis X14] Length = 191 Score = 260 bits (664), Expect = 9e-68, Method: Composition-based stats. Identities = 91/181 (50%), Positives = 131/181 (72%), Gaps = 2/181 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ VL +G + F+ A S LA R+F++ G+ V++G DF Sbjct: 1 MFIQTEVTPNPATLKFLPGRTVLGKGTMEFNGPDTAGRSQLAVRLFAVHGVTGVFYGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLG--DMKLDDMGSGDFIESDSAVV 118 ITV KD DW+HL+P +LG+IMEH++SG P++ +G D D F E+D+ V Sbjct: 61 ITVTKDASDWQHLKPAILGVIMEHYMSGAPLLADGETAGNDEANKDEAVEFFDEADAETV 120 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IK++++ RVRP VA DGGDI F+G++DG+V+++M+G+CSGCPS++ TL+ G+ N+L H Sbjct: 121 TLIKDLIETRVRPGVADDGGDITFRGFKDGVVYVNMKGSCSGCPSSTVTLRNGIQNLLKH 180 Query: 179 F 179 F Sbjct: 181 F 181 >gi|323138525|ref|ZP_08073593.1| Scaffold protein Nfu/NifU [Methylocystis sp. ATCC 49242] gi|322396159|gb|EFX98692.1| Scaffold protein Nfu/NifU [Methylocystis sp. ATCC 49242] Length = 187 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 98/188 (52%), Positives = 138/188 (73%), Gaps = 2/188 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL +GA+ F + A +PLA + +I G+ +V +G DF Sbjct: 1 MFIQTETTPNPATLKFLPGQDVLGQGAMEFRSPDAAANAPLAQALLAIDGVQAVMYGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ++V KD DW HL+P +LG IMEHF SG P++ G G + +D + SD+ V Sbjct: 61 VSVTKDGADWAHLKPAILGTIMEHFASGAPLLTEGAAGAQQHEDGE--FYDPSDAETVAT 118 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+++ RVRPAVA DGGDIVF+G+RDG+V+L+M+GACSGCPS++ TL+ G+ N+L HF+ Sbjct: 119 IKELIETRVRPAVAGDGGDIVFRGFRDGVVYLTMKGACSGCPSSTATLRNGIENLLRHFL 178 Query: 181 PEVKDIRT 188 P++K +++ Sbjct: 179 PQIKAVQS 186 >gi|221232999|ref|YP_002515435.1| mitochondrial-type Fe-S cluster assembly protein NFU [Caulobacter crescentus NA1000] gi|220962171|gb|ACL93527.1| mitochondrial-type Fe-S cluster assembly protein NFU [Caulobacter crescentus NA1000] Length = 190 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 96/191 (50%), Positives = 127/191 (66%), Gaps = 6/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP LKF+PG+ VL +GA F +E + SPLA +F + ++ V+FG DF Sbjct: 1 MFIQTETTPNPEVLKFLPGREVLGDGAREFRTPEEGDASPLAKALFELGDVSRVFFGPDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + W HL+ P+L IM+HF SG P++ + D+ GD+ E S +V Sbjct: 61 LTVTKGEDAQWPHLKAPILAAIMDHFTSGRPLLLDQTAESGGHDE---GDYDEETSQIVA 117 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+LD R+RPAVA+DGGDIVF + G+V+L MRGACSGCPS+S TLK GV N+L Sbjct: 118 EIKELLDTRIRPAVAQDGGDIVFSRFEPQTGVVWLHMRGACSGCPSSSATLKSGVENMLK 177 Query: 178 HFVPEVKDIRT 188 H+VPEV + Sbjct: 178 HYVPEVTRVEQ 188 >gi|332188730|ref|ZP_08390443.1| nitrogen-fixing NifU-like protein [Sphingomonas sp. S17] gi|332011236|gb|EGI53328.1| nitrogen-fixing NifU-like protein [Sphingomonas sp. S17] Length = 190 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 84/190 (44%), Positives = 126/190 (66%), Gaps = 1/190 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M I+TE TPNPATLKF+PG+ V+ G F++ +EA SPLA IF++ + V+FG DF Sbjct: 1 MLIETEPTPNPATLKFLPGRKVMDSGTRDFASPEEAAASPLAEAIFNLGDVTGVFFGRDF 60 Query: 61 ITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ++V DW ++P VLG++++HF + P+ G + + D+ +V Sbjct: 61 VSVTIAPGVDWSDVKPDVLGILLDHFSAQMPLFKQGAADFAVPAEEETFADNPEDADIVA 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +I+E++D RVRPAVA DGGDIV++G+ G V+L M+GAC+GCPS++ TLK G+ +L H+ Sbjct: 121 QIRELIDTRVRPAVANDGGDIVYRGFDKGKVYLKMQGACAGCPSSTATLKNGIEQLLRHY 180 Query: 180 VPEVKDIRTV 189 VPEV ++R V Sbjct: 181 VPEVTEVRAV 190 >gi|188582635|ref|YP_001926080.1| Scaffold protein Nfu/NifU [Methylobacterium populi BJ001] gi|179346133|gb|ACB81545.1| Scaffold protein Nfu/NifU [Methylobacterium populi BJ001] Length = 188 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 101/191 (52%), Positives = 136/191 (71%), Gaps = 5/191 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VVL EG +A AE SPLA+ +FS+PG++ VYFG+DF Sbjct: 1 MFIQTEATPNPATLKFLPGRVVLPEGTFEARDAAGAERSPLATALFSVPGVSGVYFGHDF 60 Query: 61 ITVGKDQY--DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 I+V K +W ++P VLG IM+HF SG P++ G +D + E+D V Sbjct: 61 ISVTKADGVNEWPQVKPAVLGAIMDHFQSGRPVLAEGT---ALAEDETEEFYDEADHDTV 117 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IK++L+ RVRPAVA DGGDI F+GYRDGIV+L M+GACSGCPS++ TL+ GV N+ H Sbjct: 118 ATIKDLLETRVRPAVAGDGGDITFRGYRDGIVYLEMKGACSGCPSSTATLRQGVQNLFRH 177 Query: 179 FVPEVKDIRTV 189 F+P V++++ + Sbjct: 178 FLPSVREVQAI 188 >gi|255088633|ref|XP_002506239.1| predicted protein [Micromonas sp. RCC299] gi|226521510|gb|ACO67497.1| predicted protein [Micromonas sp. RCC299] Length = 298 Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 90/187 (48%), Positives = 125/187 (66%), Gaps = 9/187 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT+ TPNPA+L F+PG+ V EG +F+N +E SPLA ++F I G+ SV+FG D Sbjct: 94 IFIQTQTTPNPASLMFMPGKPVYEEGGTKNFANPREGMASPLAKKLFLIDGVTSVFFGQD 153 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+TV K ++++W L+P V IM+++ SG+PII + E D +V Sbjct: 154 FVTVTKSEEHEWGTLKPEVFAAIMDYYASGEPIITDEAEL-----ANAGTAITEDDDEIV 208 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+L+ R+RPAVA DGGDIVFKG+ G+V + M+GAC GCPS+S TLK G+ N+L Sbjct: 209 AMIKELLETRIRPAVAEDGGDIVFKGWNADTGVVTVKMQGACDGCPSSSVTLKSGIENML 268 Query: 177 NHFVPEV 183 H+VPEV Sbjct: 269 RHYVPEV 275 >gi|312384995|gb|EFR29592.1| hypothetical protein AND_01304 [Anopheles darlingi] Length = 214 Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 87/191 (45%), Positives = 118/191 (61%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKF+PG VL G + F N A+ SPLA +F I G+ SV+FG D Sbjct: 1 MFIQTQDTPNPHSLKFLPGVTVLDAGQTMDFPNVSSAQCSPLAKLLFRIEGVRSVFFGAD 60 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+T+ K + +W ++P +IM+ F SG P++ + S E D V Sbjct: 61 FVTISKVEDAEWSIIKPETFAVIMDFFASGLPVVTGANPNN-------STQINEDDDETV 113 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 Q IKE+LD R+RP V DGGDI+F G+ DG+V L M+G+CS CPS+ TLK GV N+L Sbjct: 114 QMIKELLDTRIRPTVQEDGGDIIFMGFDDGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 173 Query: 179 FVPEVKDIRTV 189 ++PEV + V Sbjct: 174 YIPEVVSVEQV 184 >gi|238486392|ref|XP_002374434.1| NifU-related protein [Aspergillus flavus NRRL3357] gi|317144282|ref|XP_003189583.1| nifU-related protein [Aspergillus oryzae RIB40] gi|220699313|gb|EED55652.1| NifU-related protein [Aspergillus flavus NRRL3357] Length = 329 Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 77/201 (38%), Positives = 120/201 (59%), Gaps = 12/201 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE----GAIHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE+TPNP LKFIP VL E + + + + SPLA+ +F++ G+ Sbjct: 88 IFIQTENTPNPDALKFIPNHRVLPEDFPTSFLEYLSPRSTLAPPHPSPLAANLFNVDGVT 147 Query: 53 SVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD-- 109 S++FG +FITV K +W H++P + +I + SG+PI++ + G + Sbjct: 148 SIFFGPEFITVTKASDANWAHIKPEIFSLITQAVTSGEPIVNTVAKSGENAQEGGEEESL 207 Query: 110 -FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 + E D VV IKE+L+ R+RPA+ DGGDI +G+ +GIV L +RGAC C S++ TL Sbjct: 208 SYNEEDDEVVSMIKELLETRIRPAIQEDGGDIELRGFENGIVMLKLRGACRTCDSSTVTL 267 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ ++L H++ EV+ + V Sbjct: 268 KNGIESMLMHYIEEVQGVEQV 288 >gi|213512278|ref|NP_001134266.1| NFU1 iron-sulfur cluster scaffold homolog [Salmo salar] gi|209731958|gb|ACI66848.1| NFU1 iron-sulfur cluster scaffold homolog [Salmo salar] Length = 263 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 83/189 (43%), Positives = 115/189 (60%), Gaps = 10/189 (5%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 IQT+DTPNP +LKFIPG+ VL G + F + AE S LA +F I G+ SV++G DFIT Sbjct: 61 IQTQDTPNPRSLKFIPGKPVLGVGTLDFPSPSSAECSSLARDLFGIEGVKSVFYGPDFIT 120 Query: 63 VGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 V K D +W ++ + I + F SGDPI + E D +V Sbjct: 121 VTKADDDVEWTDIKHHAMDAITKFFDSGDPITTGVTHHESS--------HSEDDDEIVSM 172 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+LD R+RP V DGGD++FKG+ +G V L + G+C+GCPS++ TLK G+ N+L ++ Sbjct: 173 IKELLDTRIRPTVMEDGGDVIFKGFENGTVKLKLVGSCTGCPSSTVTLKNGIQNMLQFYI 232 Query: 181 PEVKDIRTV 189 PEV D+ V Sbjct: 233 PEVDDVEQV 241 >gi|115953358|ref|XP_798698.2| PREDICTED: similar to HIRA interacting protein 5, partial [Strongylocentrotus purpuratus] Length = 211 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 87/192 (45%), Positives = 117/192 (60%), Gaps = 10/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKF+PG VL G F +A A SPLA ++F I G+ V+FG DF Sbjct: 3 MFIQTQDTPNPNSLKFLPGVEVLGTGTKDFPSAMNAHGSPLARQLFRIEGVQGVFFGPDF 62 Query: 61 ITVGK---DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 ITV K D DW L+P + +M+ F +G PI+ + + E D Sbjct: 63 ITVTKMDDDNIDWRVLKPEIYATVMDFFATGVPILTDE-------TAPTDTEIQEDDDET 115 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IKE+LD R+RP V DGGDIV+ G+ +G+V L ++GAC+ CPS+ TLK+GV N+L Sbjct: 116 VMMIKELLDTRIRPTVQEDGGDIVYMGFEEGVVKLKLQGACTSCPSSIVTLKHGVQNMLQ 175 Query: 178 HFVPEVKDIRTV 189 +VPEV + V Sbjct: 176 FYVPEVLSVEAV 187 >gi|47212055|emb|CAF90173.1| unnamed protein product [Tetraodon nigroviridis] Length = 196 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 78/191 (40%), Positives = 120/191 (62%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MF+QT+DTPNP +LKF+PG VL G ++F + ++A SPLA ++F + G+ SV G DF Sbjct: 1 MFVQTQDTPNPNSLKFLPGCTVLETGTMNFDSPRDAHCSPLARQLFRVDGVKSVLLGPDF 60 Query: 61 ITVGKDQY--DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 IT+ K DW+ ++P V IM+ F SG P++ G + + D +V Sbjct: 61 ITISKIDANIDWKVIKPDVFATIMDFFTSGLPVVSEGSKQ------IEDTAPSDDDDELV 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGD++++G+ G+V L ++G+C+ CPS+ TLK G+ N+L Sbjct: 115 AMIKELLDTRIRPTVQEDGGDVLYRGFEGGVVKLKLQGSCTSCPSSIITLKSGIQNMLQF 174 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 175 YIPEVESVEQV 185 >gi|85714190|ref|ZP_01045179.1| nitrogen-fixing NifU [Nitrobacter sp. Nb-311A] gi|85699316|gb|EAQ37184.1| nitrogen-fixing NifU [Nitrobacter sp. Nb-311A] Length = 190 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 89/180 (49%), Positives = 131/180 (72%), Gaps = 1/180 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ VL + + F++A SPLA ++F++ G+ V++G DF Sbjct: 1 MFIQTEITPNPATLKFLPGRTVLGKDTMEFTSASTTARSPLAVKLFAVHGVTGVFYGSDF 60 Query: 61 ITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV KD DW+HL+P +LG+IMEH++SG P++ + G + F E+D+ V Sbjct: 61 ITVTKDDASDWQHLKPAILGVIMEHYMSGAPLLADDGGNTEPNAENDVEFFDEADAETVT 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IK++++ RVRP VA DGGDI F+G++DG+V+++M+GACSGCPS++ TL+ G+ N+L HF Sbjct: 121 LIKDLIETRVRPGVADDGGDITFRGFKDGVVYVNMKGACSGCPSSTVTLRNGIQNLLKHF 180 >gi|156044806|ref|XP_001588959.1| hypothetical protein SS1G_10507 [Sclerotinia sclerotiorum 1980] gi|154694895|gb|EDN94633.1| hypothetical protein SS1G_10507 [Sclerotinia sclerotiorum 1980 UF-70] Length = 372 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 81/201 (40%), Positives = 118/201 (58%), Gaps = 12/201 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG----AIHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTEDTPNP LKF+P +L I + N + SPLA+ + +I G+ Sbjct: 76 IFIQTEDTPNPDALKFLPNHPILPPSLNAPFIEYLNPRSTLAPPHPSPLAASLMNIDGVK 135 Query: 53 SVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIH---NGGLGDMKLDDMGSG 108 SV++G DFITV K D +W H++P + +I E SG I++ G ++ S Sbjct: 136 SVFYGVDFITVTKADDANWAHIKPEIFSLITEAVTSGAQIVNITEKTGASGEAPEEEDSL 195 Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 + E D VV IKE+L+ R+RPA+ DGGDI ++G+ DG+V L +RGAC C S++ TL Sbjct: 196 AYNEDDPEVVGMIKELLETRIRPAIQEDGGDIDYRGFEDGMVKLKLRGACRTCDSSTVTL 255 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ +L H++ EVK + V Sbjct: 256 KNGIEGMLMHYIEEVKGVVQV 276 >gi|295687469|ref|YP_003591162.1| Scaffold protein Nfu/NifU [Caulobacter segnis ATCC 21756] gi|295429372|gb|ADG08544.1| Scaffold protein Nfu/NifU [Caulobacter segnis ATCC 21756] Length = 191 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 100/191 (52%), Positives = 128/191 (67%), Gaps = 6/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP LKF+PG+ VLVEGA F A+E E SPLA +F + + V+FG DF Sbjct: 1 MFIQTETTPNPEVLKFLPGREVLVEGAREFRTAEEGEASPLAKALFDLGDVTRVFFGPDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + W HL+ P+L IM+HF SG P++ + G +D G + E S +V Sbjct: 61 LTVTKGEAAQWPHLKAPILAAIMDHFTSGRPLLLDAEPGGGHDED---GVYDEEASQIVA 117 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+LD R+RPAVA+DGGDIVF + G+V+L MRGACSGCPS+S TLK GV N+L Sbjct: 118 EIKELLDTRIRPAVAQDGGDIVFSRFEPQTGVVWLHMRGACSGCPSSSATLKAGVENMLK 177 Query: 178 HFVPEVKDIRT 188 H+VPEV + Sbjct: 178 HYVPEVTRVEQ 188 >gi|308802059|ref|XP_003078343.1| NifU-like domain-containing proteins (ISS) [Ostreococcus tauri] gi|116056795|emb|CAL53084.1| NifU-like domain-containing proteins (ISS) [Ostreococcus tauri] Length = 244 Score = 257 bits (658), Expect = 4e-67, Method: Composition-based stats. Identities = 90/191 (47%), Positives = 125/191 (65%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MF+QT+ TPNP +L F PG+ V EG+ +F +A+EA +SPLA R+F+I G+ +V+ G DF Sbjct: 40 MFVQTQATPNPESLMFQPGRDVYAEGSRNFGSAREAMVSPLARRLFAIDGVTNVFLGVDF 99 Query: 61 ITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV KD +DWE ++P IM+ + SG+ ++ L + E D VV Sbjct: 100 ITVTKDADHDWETVKPRTFEAIMDFYASGEAVVDEASL------EGHGTAIEEDDDEVVA 153 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAVA DGGDIVFK Y G+V + + GAC GCPS+S TLK G+ N+L Sbjct: 154 MIKELLETRIRPAVAEDGGDIVFKAYDQETGVVSVQLMGACDGCPSSSVTLKSGIENMLM 213 Query: 178 HFVPEVKDIRT 188 H+VPEVK ++ Sbjct: 214 HYVPEVKGVQQ 224 >gi|115390869|ref|XP_001212939.1| HIRA-interacting protein 5 [Aspergillus terreus NIH2624] gi|114193863|gb|EAU35563.1| HIRA-interacting protein 5 [Aspergillus terreus NIH2624] Length = 323 Score = 257 bits (658), Expect = 4e-67, Method: Composition-based stats. Identities = 77/201 (38%), Positives = 119/201 (59%), Gaps = 12/201 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE----GAIHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE+TPNP LKFIP VL E + + + + SPLA+ + ++ G+ Sbjct: 86 IFIQTENTPNPDALKFIPNHRVLPEDFPTTFLEYLSPRSTLAPPHPSPLAANLLNVEGVT 145 Query: 53 SVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD-- 109 SV++G DFITV K +W H++P V +I + SG+ +++ + G + Sbjct: 146 SVFYGPDFITVTKASDANWAHIKPEVFSLITQAVTSGEALVNTVAKTGEHAQEGGEEESL 205 Query: 110 -FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 + E D VV IKE+LD R+RPA+ DGGDI F+G+ +GIV L +RGAC C S++ TL Sbjct: 206 GYNEEDDEVVSMIKELLDTRIRPAIQEDGGDIEFRGFENGIVMLKLRGACRTCDSSTVTL 265 Query: 169 KYGVANILNHFVPEVKDIRTV 189 + G+ ++L H++ EV+ + V Sbjct: 266 RNGIESMLMHYIEEVQGVEQV 286 >gi|115946407|ref|XP_001184965.1| PREDICTED: similar to HIRA interacting protein 5 [Strongylocentrotus purpuratus] Length = 209 Score = 257 bits (658), Expect = 4e-67, Method: Composition-based stats. Identities = 87/192 (45%), Positives = 117/192 (60%), Gaps = 10/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKF+PG VL G F +A A SPLA ++F I G+ V+FG DF Sbjct: 1 MFIQTQDTPNPNSLKFLPGVEVLGTGTKDFPSAMNAHGSPLARQLFRIEGVQGVFFGPDF 60 Query: 61 ITVGK---DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 ITV K D DW L+P + +M+ F +G PI+ + + E D Sbjct: 61 ITVTKMDDDNIDWRVLKPEIYATVMDFFATGVPILTDE-------TAPTDTEIQEDDDET 113 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IKE+LD R+RP V DGGDIV+ G+ +G+V L ++GAC+ CPS+ TLK+GV N+L Sbjct: 114 VMMIKELLDTRIRPTVQEDGGDIVYMGFEEGVVKLKLQGACTSCPSSIVTLKHGVQNMLQ 173 Query: 178 HFVPEVKDIRTV 189 +VPEV + V Sbjct: 174 FYVPEVLSVEAV 185 >gi|189200054|ref|XP_001936364.1| HIRA-interacting protein 5 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983463|gb|EDU48951.1| HIRA-interacting protein 5 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 312 Score = 257 bits (658), Expect = 4e-67, Method: Composition-based stats. Identities = 86/202 (42%), Positives = 121/202 (59%), Gaps = 13/202 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 MFIQTE TPN LKF P Q VL E + + N + SPLA+++ +I GI Sbjct: 70 MFIQTEPTPNADALKFNPNQRVLPENISSPFLEYLNPRSTLAPPHPSPLAAQLMNIDGIT 129 Query: 53 SVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKL----DDMGS 107 SV+FG D+ITV KD W H++P V +I E+ SG PI++ + + S Sbjct: 130 SVFFGADYITVTKDSSTPWAHIKPEVFALINEYMTSGQPIVNTVAAKAGEQGQGGQENDS 189 Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASET 167 + E+D VV IKE+L+ RVRPA+ DGGDI F+G+ DG V+L +RGAC C S++ T Sbjct: 190 LAYDENDDEVVGMIKELLETRVRPAIQEDGGDIEFRGFNDGQVWLKLRGACRTCDSSTVT 249 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 LK G+ ++L H++ EVK ++ V Sbjct: 250 LKNGIESMLMHYIEEVKGVQQV 271 >gi|302381462|ref|YP_003817285.1| Scaffold protein Nfu/NifU [Brevundimonas subvibrioides ATCC 15264] gi|302192090|gb|ADK99661.1| Scaffold protein Nfu/NifU [Brevundimonas subvibrioides ATCC 15264] Length = 185 Score = 257 bits (657), Expect = 5e-67, Method: Composition-based stats. Identities = 85/193 (44%), Positives = 124/193 (64%), Gaps = 13/193 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP LKF+PG+ V G+ F + +A SPLA +F + ++ V+FG D Sbjct: 1 MFIQTEPTPNPNALKFLPGRDVAPGGSREFLSIDQATASPLAEALFQLEDVSGVFFGGDH 60 Query: 61 ITVGKDQY--DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 I+V + ++ DW ++P +L +IM+HF+SG P++ G D E DS +V Sbjct: 61 ISVTRAEHGRDWSEMKPEILSVIMDHFVSGQPLMREGADAV---------DHAEDDSEIV 111 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 IK +LD+R+RPAVA+DGGDI+F + + G++ L MRGAC+GCPS++ TLK GV ++ Sbjct: 112 AEIKSLLDSRIRPAVAQDGGDILFDAFDEESGVLRLRMRGACAGCPSSAMTLKAGVEQMM 171 Query: 177 NHFVPEVKDIRTV 189 H+VPEV + V Sbjct: 172 RHYVPEVTSVEQV 184 >gi|170741563|ref|YP_001770218.1| scaffold protein Nfu/NifU [Methylobacterium sp. 4-46] gi|168195837|gb|ACA17784.1| Scaffold protein Nfu/NifU [Methylobacterium sp. 4-46] Length = 187 Score = 257 bits (657), Expect = 6e-67, Method: Composition-based stats. Identities = 98/191 (51%), Positives = 136/191 (71%), Gaps = 6/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VVL +G + +A SPLA +F++PG+A VYFG+DF Sbjct: 1 MFIQTEATPNPATLKFLPGKVVLTDGTFEARSPDQAAPSPLARALFAVPGVAGVYFGHDF 60 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 I+V K D +W ++P VLG IMEHF+SG P++ G ++ + D+ V Sbjct: 61 ISVTKAEDGSEWPQVKPAVLGAIMEHFLSGAPVLDAGAAPAAPAEEFFAEA----DADTV 116 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IK++L+ RVRPAVA DGGDI F+GYR+G+V+L M+GACSGCPS++ TL+ GV N+ H Sbjct: 117 ATIKDLLETRVRPAVAGDGGDITFRGYREGVVYLEMKGACSGCPSSTATLRQGVQNLFRH 176 Query: 179 FVPEVKDIRTV 189 F+PEV++++ V Sbjct: 177 FLPEVREVQAV 187 >gi|167520450|ref|XP_001744564.1| hypothetical protein [Monosiga brevicollis MX1] gi|163776895|gb|EDQ90513.1| predicted protein [Monosiga brevicollis MX1] Length = 209 Score = 257 bits (657), Expect = 6e-67, Method: Composition-based stats. Identities = 81/190 (42%), Positives = 117/190 (61%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT DTPNP +L F PG +L + ++A A SPLA +F + G+ SV+ DF Sbjct: 1 MFIQTRDTPNPNSLMFYPGVDILPGSTLELTSAAAAHQSPLARALFRVDGVKSVFLASDF 60 Query: 61 ITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +T+ KD+ +W L+P + +M+ F S P++ + + E D +V Sbjct: 61 VTINKDEAAEWSTLKPNIYATMMDFFASNQPVVLDSY------EAPTDTAVSEDDDEIVA 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+LD+R+RPAV DGGDI+F+G+ DGIV L + GAC+GCPS+ TLK GV N+L H+ Sbjct: 115 MIKELLDSRIRPAVQEDGGDILFQGFVDGIVQLRLSGACTGCPSSIFTLKNGVENMLMHY 174 Query: 180 VPEVKDIRTV 189 +PEV+ + V Sbjct: 175 IPEVEGVEQV 184 >gi|149186788|ref|ZP_01865099.1| hypothetical protein ED21_29856 [Erythrobacter sp. SD-21] gi|148829696|gb|EDL48136.1| hypothetical protein ED21_29856 [Erythrobacter sp. SD-21] Length = 193 Score = 257 bits (656), Expect = 8e-67, Method: Composition-based stats. Identities = 88/192 (45%), Positives = 130/192 (67%), Gaps = 4/192 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFI+TE TPNPA+LKF+PG+ V+ +G F+N + AE SPLA IF + +V+FG DF Sbjct: 1 MFIETETTPNPASLKFLPGRPVMGQGTREFANPEAAEASPLAQAIFDTGEVVNVFFGGDF 60 Query: 61 ITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIES---DSA 116 ITV W L+P VL ++++HF+S P+ G G + + +E D+ Sbjct: 61 ITVTSAPGVSWSDLKPQVLSILLDHFVSEAPLFVPGTAGGIAVPAEDEALLVEENAADAD 120 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +V +I E+L+ RVRPAVA DGGDI ++G++DG+V+L ++GACSGCPS++ TLK+G+ +L Sbjct: 121 IVAQINELLETRVRPAVAGDGGDIQYRGFKDGVVYLQLQGACSGCPSSTATLKHGIEGLL 180 Query: 177 NHFVPEVKDIRT 188 H+VPEV ++R Sbjct: 181 KHYVPEVVEVRA 192 >gi|328862177|gb|EGG11278.1| hypothetical protein MELLADRAFT_41822 [Melampsora larici-populina 98AG31] Length = 292 Score = 257 bits (656), Expect = 8e-67, Method: Composition-based stats. Identities = 84/194 (43%), Positives = 126/194 (64%), Gaps = 8/194 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE--GAIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 +FIQTE TPNP LKFIPG V+ + G + F + SPLA +F IPGI S++FG Sbjct: 74 IFIQTETTPNPDALKFIPGVPVMGKSNGTLEFLSNSNPNSSPLAKSLFKIPGIKSLFFGP 133 Query: 59 DFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 DFI++ KD+ +W ++P + ++ME F SG PI+ + G+ +D +ESDS V Sbjct: 134 DFISINKDEETNWSIIKPEIYSLMMEFFSSGQPILTDESEGNQGPED---TRVLESDSEV 190 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANI 175 + IKE+LD RVRP++ DGGD+ +KG+ + G+V L ++G+C GC S++ TLK G+ + Sbjct: 191 IAMIKELLDTRVRPSIQEDGGDLEYKGFDEETGVVTLMLKGSCRGCDSSTVTLKSGIERM 250 Query: 176 LNHFVPEVKDIRTV 189 L H++PEV+ + V Sbjct: 251 LMHYIPEVQAVEQV 264 >gi|67516331|ref|XP_658051.1| hypothetical protein AN0447.2 [Aspergillus nidulans FGSC A4] gi|40747390|gb|EAA66546.1| hypothetical protein AN0447.2 [Aspergillus nidulans FGSC A4] gi|259489306|tpe|CBF89467.1| TPA: NifU-related protein (AFU_orthologue; AFUA_1G04680) [Aspergillus nidulans FGSC A4] Length = 326 Score = 257 bits (656), Expect = 8e-67, Method: Composition-based stats. Identities = 81/201 (40%), Positives = 120/201 (59%), Gaps = 12/201 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE----GAIHFSNAKEAEISP----LASRIFSIPGIA 52 +FIQTE TPNP LKFIP VL E + + + + P LA+ +F++ G+ Sbjct: 89 IFIQTESTPNPDALKFIPNHRVLPEDFPTSFLEYLSPRSTLAPPHPSTLAANLFNVEGVQ 148 Query: 53 SVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHN---GGLGDMKLDDMGSG 108 SV+FG DFITV K +W H++P V +I + SG+PI++ G K + S Sbjct: 149 SVFFGTDFITVTKASDTNWAHIKPEVFSLITQAVTSGEPIVNTVEKSGASGQKGGEEDSL 208 Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 + E D VV IKE+L+ R+RPA+ DGGDI F+G+ +GIV L +RGAC C S++ TL Sbjct: 209 SYNEEDDEVVSMIKELLETRIRPAIQEDGGDIEFRGFENGIVMLKLRGACRTCDSSTVTL 268 Query: 169 KYGVANILNHFVPEVKDIRTV 189 + G+ ++L H++ EV+ + V Sbjct: 269 RNGIESMLMHYIEEVQGVEQV 289 >gi|296421235|ref|XP_002840171.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636384|emb|CAZ84362.1| unnamed protein product [Tuber melanosporum] Length = 279 Score = 256 bits (655), Expect = 9e-67, Method: Composition-based stats. Identities = 81/192 (42%), Positives = 123/192 (64%), Gaps = 9/192 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG--AIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 +FIQTE TPNP+ LKFIPG VL EG + + + +E SPLA ++F++ G+ SV++G Sbjct: 48 LFIQTESTPNPSALKFIPGLPVLPEGCQSQEYIDGRETHNSPLARKLFAVDGVRSVFYGP 107 Query: 59 DFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 DFIT+ KD+ W L+ V +I E SG+P+I G + + E DS V Sbjct: 108 DFITITKDEETQWAFLKAEVYSLITEALNSGEPVILEGTM------ESSDTQREEGDSEV 161 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IKE+L+ R+RPA+ DGGDI ++G+ +G+V L +RGAC C S++ TLK G+ ++L Sbjct: 162 VGMIKELLETRIRPAIQEDGGDIEYRGFENGVVKLKLRGACRTCDSSTVTLKNGIESMLM 221 Query: 178 HFVPEVKDIRTV 189 H++ EV+ ++ + Sbjct: 222 HYIEEVQSVQQI 233 >gi|307189950|gb|EFN74186.1| NFU1 iron-sulfur cluster scaffold-like protein, mitochondrial [Camponotus floridanus] Length = 289 Score = 256 bits (655), Expect = 9e-67, Method: Composition-based stats. Identities = 84/192 (43%), Positives = 118/192 (61%), Gaps = 12/192 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKFIPG VL EG F +AK+A S LA +F I G+ +++FG D Sbjct: 81 MFIQTQDTPNPNSLKFIPGVPVLGEGCTKDFPSAKDAYCSSLAKMLFRIEGVKAIFFGPD 140 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 FITV K + +W+ L+P + IM+ F SG PI++ D + Sbjct: 141 FITVTKLDEDVEWKLLKPEIFATIMDFFASGLPIMNE------TSQPATDTQINADDDEI 194 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 VQ IKE+L+ R+RP V DGGDI G+ +GIV L M+G+C+ CPS++ TL+ GV N++ Sbjct: 195 VQMIKELLETRIRPTVQEDGGDI---GFEEGIVKLKMQGSCTNCPSSAVTLRNGVQNMMR 251 Query: 178 HFVPEVKDIRTV 189 ++PEV + V Sbjct: 252 FYIPEVLGVVQV 263 >gi|167643992|ref|YP_001681655.1| scaffold protein Nfu/NifU [Caulobacter sp. K31] gi|167346422|gb|ABZ69157.1| Scaffold protein Nfu/NifU [Caulobacter sp. K31] Length = 189 Score = 256 bits (655), Expect = 9e-67, Method: Composition-based stats. Identities = 96/191 (50%), Positives = 126/191 (65%), Gaps = 7/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP LKF+PG+ VL EGA F A+E + SPLA +F + + V+FG DF Sbjct: 1 MFIQTETTPNPEVLKFLPGREVLGEGAREFKTAEEGDASPLAEALFRLGDVNRVFFGPDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + +W HL+ P+L IM+HF SG P++ + D G + E S +V Sbjct: 61 LTVTKAEGAEWPHLKAPILAAIMDHFTSGRPLLLDQAESGHDND----GVYDEETSQIVA 116 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANILN 177 IK++LD R+RPAVA+DGGDIVF + G+V+L MRGACSGCPS+S TLK GV N+L Sbjct: 117 EIKDLLDTRIRPAVAQDGGDIVFSKFEPATGVVWLHMRGACSGCPSSSATLKAGVENMLK 176 Query: 178 HFVPEVKDIRT 188 H+VPEV + Sbjct: 177 HYVPEVTRVEQ 187 >gi|163852613|ref|YP_001640656.1| scaffold protein Nfu/NifU [Methylobacterium extorquens PA1] gi|218531454|ref|YP_002422270.1| Scaffold protein Nfu/NifU [Methylobacterium chloromethanicum CM4] gi|240139947|ref|YP_002964424.1| NifU-like protein [Methylobacterium extorquens AM1] gi|254562372|ref|YP_003069467.1| NifU-like [Methylobacterium extorquens DM4] gi|163664218|gb|ABY31585.1| Scaffold protein Nfu/NifU [Methylobacterium extorquens PA1] gi|218523757|gb|ACK84342.1| Scaffold protein Nfu/NifU [Methylobacterium chloromethanicum CM4] gi|240009921|gb|ACS41147.1| NifU-like protein [Methylobacterium extorquens AM1] gi|254269650|emb|CAX25622.1| NifU-like [Methylobacterium extorquens DM4] Length = 188 Score = 256 bits (655), Expect = 9e-67, Method: Composition-based stats. Identities = 98/191 (51%), Positives = 135/191 (70%), Gaps = 5/191 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VVL +G + AE SPLA+ +F++PG++ VYFG+DF Sbjct: 1 MFIQTEATPNPATLKFLPGRVVLTDGTFEARDTASAERSPLATALFAVPGVSGVYFGHDF 60 Query: 61 ITVGKDQY--DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 I+V K +W ++P VLG IM+HF SG P++ G +D + E+D V Sbjct: 61 ISVTKADGVNEWPQVKPAVLGAIMDHFQSGRPVLAEGT---ALAEDETEEFYDEADHDTV 117 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IK++L+ RVRPAVA DGGDI F+GYRDGIV+L M+GACSGCPS++ TL+ GV N+ H Sbjct: 118 VTIKDLLETRVRPAVAGDGGDITFRGYRDGIVYLEMKGACSGCPSSTATLRQGVQNLFRH 177 Query: 179 FVPEVKDIRTV 189 F+P V++++ + Sbjct: 178 FLPSVREVQAI 188 >gi|294012036|ref|YP_003545496.1| nitrogen-fixing NifU-like protein [Sphingobium japonicum UT26S] gi|292675366|dbj|BAI96884.1| nitrogen-fixing NifU-like protein [Sphingobium japonicum UT26S] Length = 190 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 85/190 (44%), Positives = 125/190 (65%), Gaps = 1/190 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M I+TE TPNPAT+KFIPG+VV+ G F+ +EAE SPLA +F + + V+FG DF Sbjct: 1 MLIETEATPNPATVKFIPGRVVMGMGTRDFATPEEAEASPLADALFGLGDVTGVFFGGDF 60 Query: 61 ITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I+V W ++P +L +++EHF + P+ G G++ + D +V Sbjct: 61 ISVTIAPGAQWSDVKPDILSILLEHFSANMPLFRPGSAGEIFVPQEEEFADDPEDEEIVA 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +I+E++D RVRPAVA DGGDI+++G+ G V+L M+GACSGCPS++ TLK G+ +L H+ Sbjct: 121 QIRELIDTRVRPAVANDGGDIIYRGFDKGTVYLRMQGACSGCPSSTATLKNGIEQLLKHY 180 Query: 180 VPEVKDIRTV 189 VPEV ++R V Sbjct: 181 VPEVTEVRAV 190 >gi|85083846|ref|XP_957202.1| HIRA-interacting protein 5 [Neurospora crassa OR74A] gi|18376131|emb|CAD21196.1| conserved hypothetical protein [Neurospora crassa] gi|28918289|gb|EAA27966.1| HIRA-interacting protein 5 [Neurospora crassa OR74A] Length = 326 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 86/203 (42%), Positives = 125/203 (61%), Gaps = 14/203 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE+TPNP +LKF+P Q V+ + I + NA+ SPLA+++ +I G+ Sbjct: 83 IFIQTENTPNPDSLKFLPNQKVIPDSIKTPFIEYMNARSTIAPPYPSPLAAQLMNIEGVT 142 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH-----NGGLGDMKLDDMG 106 SV++G DFITV K +W H+RP V +I E SG I++ G + D+ Sbjct: 143 SVFYGTDFITVTKSADANWAHIRPEVFALITETITSGQTIVNVVERNEGEESTQESDEKD 202 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 S + E+DS VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C S++ Sbjct: 203 SLAYDENDSEVVGMIKELLETRIRPAIQEDGGDIEFRGFEDGIVKLKLRGACRTCDSSTV 262 Query: 167 TLKYGVANILNHFVPEVKDIRTV 189 TLK G+ +L H++ EV+ + V Sbjct: 263 TLKNGIEGMLMHYIEEVQGVEQV 285 >gi|239799267|dbj|BAH70563.1| ACYPI005854 [Acyrthosiphon pisum] Length = 254 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 87/192 (45%), Positives = 118/192 (61%), Gaps = 10/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP ++KF+PG VL +G + F NA A SPLA +F I G+ SV+FG D Sbjct: 43 MFIQTQDTPNPNSVKFLPGVQVLEKGHTMDFPNATAAYCSPLAKVLFRIEGVKSVFFGSD 102 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 +IT+ K D +W L+P + IM+ F SG PI+ + E D+ Sbjct: 103 YITLTKTDDDIEWMVLKPEIYATIMDFFASGLPILTDAKP-------TSDTQIHEDDNET 155 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IKE+LD+R+RP V DGGDI+F GY GIV L ++G+C+ CPS+ TLK GV N+L Sbjct: 156 VMMIKELLDSRIRPTVQEDGGDILFIGYDAGIVKLKLQGSCTSCPSSVVTLKGGVQNMLQ 215 Query: 178 HFVPEVKDIRTV 189 ++PEV + V Sbjct: 216 FYIPEVIAVEQV 227 >gi|144900396|emb|CAM77260.1| NifU domain protein [Magnetospirillum gryphiswaldense MSR-1] Length = 182 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 91/191 (47%), Positives = 136/191 (71%), Gaps = 12/191 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE+TPNP+TLKF+PG+ V+ G F +A+ A SPLA+++F++ G+ASV+ G DF Sbjct: 1 MFIQTENTPNPSTLKFLPGREVMPAGTADFGSAEAAIRSPLAAKLFTVDGVASVFLGGDF 60 Query: 61 ITVGKDQY-DWEHLRPPVLGMIMEHFISGD-PIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITVGK + W L+P +L IM+ F +G P+I+ G ++ + +V Sbjct: 61 ITVGKTEAATWGTLKPLLLSAIMDFFTAGLLPVINEGTEKVSDGEE----------TDIV 110 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++IKE+LD RVRPAVA+DGGDI+F+ + DGIV++ ++GACSGCPS++ TLK+G+ N+L + Sbjct: 111 RQIKELLDTRVRPAVAQDGGDIIFRSFDDGIVYVHLQGACSGCPSSTATLKHGIENMLKY 170 Query: 179 FVPEVKDIRTV 189 +VPEV ++ V Sbjct: 171 YVPEVVAVQAV 181 >gi|302409492|ref|XP_003002580.1| HIRA-interacting protein [Verticillium albo-atrum VaMs.102] gi|261358613|gb|EEY21041.1| HIRA-interacting protein [Verticillium albo-atrum VaMs.102] Length = 292 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 82/198 (41%), Positives = 118/198 (59%), Gaps = 9/198 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE TPNP LKF+P VL EG I + N + SPLA+++ +I G+ Sbjct: 66 IFIQTEPTPNPDALKFLPNHRVLPEGISVPYIEYLNPRATIAPPHPSPLAAQLLAIDGVT 125 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI 111 +V++G DFITV K +W H+R + +I E SG P++ + + S + Sbjct: 126 AVFYGADFITVTKAADANWAHVRAEIFALITEAITSGAPLVVVKEGAEAAPAEEDSLAYN 185 Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E DS VV IKE+L+ R+RPA+ DGGDI F+G+ DG+V L +RGAC C S++ TLK G Sbjct: 186 EDDSEVVGMIKELLETRIRPAIQEDGGDIEFRGFEDGVVLLKLRGACRTCDSSTVTLKNG 245 Query: 172 VANILNHFVPEVKDIRTV 189 + +L H++ EVK + V Sbjct: 246 IEGMLMHYIEEVKSVNQV 263 >gi|302773942|ref|XP_002970388.1| hypothetical protein SELMODRAFT_93100 [Selaginella moellendorffii] gi|300161904|gb|EFJ28518.1| hypothetical protein SELMODRAFT_93100 [Selaginella moellendorffii] Length = 210 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 86/187 (45%), Positives = 120/187 (64%), Gaps = 8/187 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +FIQ + TPNPA+L F PG+ V+ G+ F NA+ A SPLA +F I G+ V+FG DF Sbjct: 10 LFIQVQTTPNPASLIFSPGKPVMEIGSSDFPNARTAMKSPLAKSLFGIDGVTRVFFGSDF 69 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+ L+P V IM+ + SG P+ ++ +++ E D V Sbjct: 70 VTVTKSDDTEWDVLKPEVFAAIMDFYASGQPLFYSA-----QVEAPKDTAIEEGDDETVV 124 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ GIV L M+GACSGCPS++ TLK G+ N+L Sbjct: 125 MIKELLETRIRPAVKDDGGDIEYRGFDRESGIVELKMQGACSGCPSSAVTLKSGIENMLM 184 Query: 178 HFVPEVK 184 H+VPEVK Sbjct: 185 HYVPEVK 191 >gi|225711062|gb|ACO11377.1| NFU1 iron-sulfur cluster scaffold homolog [Caligus rogercresseyi] Length = 237 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 79/194 (40%), Positives = 117/194 (60%), Gaps = 11/194 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLV--EGAIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 M+I+T++TPNP +LKF+PG VL + F A SPLA +F + G+ V+FG Sbjct: 27 MYIRTQETPNPQSLKFLPGVRVLETAGSTLDFPTPSAAYCSPLAKLLFRVDGVKGVFFGQ 86 Query: 59 DFITVGKDQ---YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDS 115 DFIT+ K++ +W+ ++P V +M+ F SG PI++ + E D Sbjct: 87 DFITITKEEDSEVEWKVIKPEVYATLMDFFASGLPIVNE------DAKPHSDTEIHEDDD 140 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE+LD+R+RP V DGGDI+F G+ DGIV L M+G+C+ CPS+ TLK GV N+ Sbjct: 141 DTVAMIKELLDSRIRPTVQEDGGDIIFMGFEDGIVKLKMQGSCTSCPSSIVTLKNGVQNM 200 Query: 176 LNHFVPEVKDIRTV 189 L ++PEV ++ + Sbjct: 201 LQFYIPEVIEVEQI 214 >gi|114571567|ref|YP_758247.1| NifU domain-containing protein [Maricaulis maris MCS10] gi|114342029|gb|ABI67309.1| nitrogen-fixing NifU domain protein [Maricaulis maris MCS10] Length = 187 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 86/192 (44%), Positives = 130/192 (67%), Gaps = 9/192 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP TLKF+PG+ + +G F + ++A +PLA+ +F + G++ V+FG DF Sbjct: 1 MFIQTEATPNPNTLKFLPGREIAPDGPREFESEEDAASAPLAADLFLVDGVSGVFFGEDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I + K D Y+W+H++P +LG IM+ SG P++ + ++ G ++ + +V+ Sbjct: 61 IAITKTDAYEWDHIKPFLLGTIMDGLQSGRPLV------GSETNETGHANYAGENEGLVK 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 I E++D RVRPAVA+DGGDI+F Y GIV L MRGACSGCPS++ TLK G+ N+L Sbjct: 115 EIIELIDTRVRPAVAQDGGDILFHSYLADSGIVRLKMRGACSGCPSSTMTLKSGIENLLK 174 Query: 178 HFVPEVKDIRTV 189 H++PE++ + V Sbjct: 175 HYIPEIQSVEAV 186 >gi|302769472|ref|XP_002968155.1| hypothetical protein SELMODRAFT_67451 [Selaginella moellendorffii] gi|300163799|gb|EFJ30409.1| hypothetical protein SELMODRAFT_67451 [Selaginella moellendorffii] Length = 187 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 87/187 (46%), Positives = 118/187 (63%), Gaps = 8/187 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +FIQ + TPNPA+L F PG+ V+ G+ F NA+ A SPLA +F I G+ V+FG DF Sbjct: 6 LFIQVQTTPNPASLIFSPGKPVMEIGSSDFPNARTAMKSPLAKSLFGIDGVTRVFFGSDF 65 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W+ L+P V IM+ + SG P+ ++ K E D V Sbjct: 66 VTVTKSDDTEWDVLKPEVFAAIMDFYASGQPLFYSAQAAAPK-----DTAIEEGDDETVV 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ GIV L M+GACSGCPS++ TLK G+ N+L Sbjct: 121 MIKELLETRIRPAVKDDGGDIEYRGFDRESGIVELKMQGACSGCPSSAVTLKSGIENMLM 180 Query: 178 HFVPEVK 184 H+VPEVK Sbjct: 181 HYVPEVK 187 >gi|307293136|ref|ZP_07572982.1| Scaffold protein Nfu/NifU [Sphingobium chlorophenolicum L-1] gi|306881202|gb|EFN12418.1| Scaffold protein Nfu/NifU [Sphingobium chlorophenolicum L-1] Length = 190 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 86/190 (45%), Positives = 126/190 (66%), Gaps = 1/190 (0%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M I+TE TPNPAT+KF+PG+VV+ G F+ +EAE SPLA +F + + V+FG DF Sbjct: 1 MLIETEATPNPATVKFLPGRVVMGMGTRDFATPEEAEASPLADALFGLGDVTGVFFGGDF 60 Query: 61 ITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I+V W ++P +L +++EHF P+ G GD+ + + D+ +V Sbjct: 61 ISVTIAPGAQWSDVKPDILSILLEHFSVNMPLFAPGSAGDIFVPEEEEFADDPEDAEIVS 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +I+E++D RVRPAVA DGGDIV++G+ G V+L M+GACSGCPS++ TLK G+ +L H+ Sbjct: 121 QIRELIDTRVRPAVANDGGDIVYRGFDKGTVYLRMQGACSGCPSSTATLKNGIEQLLKHY 180 Query: 180 VPEVKDIRTV 189 VPEV ++R V Sbjct: 181 VPEVTEVRAV 190 >gi|212540194|ref|XP_002150252.1| NifU-related protein [Penicillium marneffei ATCC 18224] gi|210067551|gb|EEA21643.1| NifU-related protein [Penicillium marneffei ATCC 18224] Length = 321 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 82/203 (40%), Positives = 121/203 (59%), Gaps = 14/203 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE TPNP LKF+P VL E + + + + SPLA+++ +I GI+ Sbjct: 81 IFIQTESTPNPDALKFLPNNRVLPENFSTPFLEYLSPRSTLAPPHPSPLAAKLLNIEGIS 140 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD-- 109 SV++G DFITV K +W H++P V +I E SG+PI++ D G Sbjct: 141 SVFYGPDFITVTKSSDVNWAHVKPEVFSLITEVVTSGEPIVNTVEHTSGAQDAQEGGGED 200 Query: 110 ---FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + E D VV IKE+L+ R+RPA+ DGGDI F+G+ +GIV L +RGAC C S++ Sbjct: 201 TLGYNEEDDEVVGMIKELLETRIRPAIQEDGGDIEFRGFENGIVLLKLRGACRTCDSSTV 260 Query: 167 TLKYGVANILNHFVPEVKDIRTV 189 TLK G+ ++L H++ EV+ ++ V Sbjct: 261 TLKNGIESMLMHYIEEVQGVQQV 283 >gi|94498004|ref|ZP_01304568.1| nitrogen-fixing NifU-like protein [Sphingomonas sp. SKA58] gi|94422587|gb|EAT07624.1| nitrogen-fixing NifU-like protein [Sphingomonas sp. SKA58] Length = 194 Score = 255 bits (651), Expect = 3e-66, Method: Composition-based stats. Identities = 88/191 (46%), Positives = 131/191 (68%), Gaps = 2/191 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M I+TE TPNPAT+KFIPG+VV+ G F++ +EAE SPLAS +F++ + V+FG DF Sbjct: 4 MLIETEPTPNPATVKFIPGRVVMGAGTRDFASPEEAEASPLASALFTLGDVTGVFFGGDF 63 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDF-IESDSAVV 118 I+V + DW ++P VL +++EHF + P+ G G++ + D+ +V Sbjct: 64 ISVTIGEGSDWRDVKPEVLSILLEHFSANMPLFVAGSAGEIHVPADDDAFAENPEDAEIV 123 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +I+E++D RVRPAVA DGGDI+++G+ G V+L M+GAC+GCPS+S TLK G+ +L H Sbjct: 124 DQIRELIDTRVRPAVANDGGDIIYRGFDKGTVYLKMQGACAGCPSSSATLKNGIEQLLKH 183 Query: 179 FVPEVKDIRTV 189 +VPEV ++R V Sbjct: 184 YVPEVTEVRAV 194 >gi|193599106|ref|XP_001949519.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like [Acyrthosiphon pisum] Length = 254 Score = 254 bits (650), Expect = 4e-66, Method: Composition-based stats. Identities = 86/192 (44%), Positives = 117/192 (60%), Gaps = 10/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP ++KF+PG VL +G + F NA A SPLA +F I G+ SV+FG D Sbjct: 43 MFIQTQDTPNPNSVKFLPGVQVLEKGHTMDFPNATAAYCSPLAKVLFRIEGVKSVFFGSD 102 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 +IT+ K D +W L+P + IM+ F SG PI+ + E D+ Sbjct: 103 YITLTKTDDDIEWMVLKPEIYATIMDFFASGLPILTDAKP-------TSDTQIHEDDNET 155 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IKE+LD+R+RP V DGGDI+F GY GIV L ++G+C+ CPS+ TLK GV +L Sbjct: 156 VMMIKELLDSRIRPTVQEDGGDILFIGYDAGIVKLKLQGSCTSCPSSVVTLKGGVQYMLQ 215 Query: 178 HFVPEVKDIRTV 189 ++PEV + V Sbjct: 216 FYIPEVIAVEQV 227 >gi|322696539|gb|EFY88330.1| NifU-like protein [Metarhizium acridum CQMa 102] Length = 297 Score = 254 bits (650), Expect = 4e-66, Method: Composition-based stats. Identities = 82/199 (41%), Positives = 120/199 (60%), Gaps = 10/199 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE----GAIHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE+TPNP LKF+P V+ E I + N + SPLA+++ +I GI Sbjct: 73 IFIQTENTPNPDALKFLPNHRVVPEEINTPFIEYLNPRSTISPPYPSPLAAKLMNIDGIT 132 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLD-DMGSGDF 110 SV++G DFITV K +W H+RP + +I E SG+ I+ + D + S + Sbjct: 133 SVFYGADFITVTKAGDANWAHIRPEIFALITEAITSGETIVSVAERKEGDEDIEEDSLAY 192 Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 E+DS VV IKE+L+ R+RPA+ DGGDI ++G+ DG V L +RGAC C S++ TLK Sbjct: 193 NENDSEVVGMIKELLETRIRPAIQEDGGDIEYRGFDDGYVKLKLRGACRTCDSSTVTLKN 252 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ +L H++ EVK + + Sbjct: 253 GIEGMLMHYIEEVKGVHQI 271 >gi|302927119|ref|XP_003054431.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256735372|gb|EEU48718.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 309 Score = 254 bits (650), Expect = 4e-66, Method: Composition-based stats. Identities = 82/202 (40%), Positives = 120/202 (59%), Gaps = 13/202 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE TPNP LKF+P V+ EG I + N + SPLA+++ +I G+ Sbjct: 76 IFIQTEGTPNPDALKFLPNHRVVPEGISTPFIEYLNPRATISPPHPSPLAAKLMNIDGVT 135 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD-- 109 SV++G DFITV K +W H+RP + +I E SG+ +++ + + D Sbjct: 136 SVFYGADFITVTKAADANWAHIRPEIFALITEAITSGETLVNVAERREGETHPEAEEDSL 195 Query: 110 -FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASET 167 + E DS VV IKE+L+ R+RPA+ DGGDI F+G+ D G V L +RGAC C S++ T Sbjct: 196 AYNEDDSEVVGMIKELLETRIRPAIQEDGGDIDFRGFDDEGYVHLRLRGACRTCDSSTVT 255 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 LK G+ +L H++ EVK ++ V Sbjct: 256 LKNGIEGMLMHYIEEVKGVKQV 277 >gi|145228927|ref|XP_001388772.1| nifU-related protein [Aspergillus niger CBS 513.88] gi|134054866|emb|CAK36880.1| unnamed protein product [Aspergillus niger] Length = 330 Score = 254 bits (650), Expect = 4e-66, Method: Composition-based stats. Identities = 75/201 (37%), Positives = 119/201 (59%), Gaps = 12/201 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE----GAIHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE+TPNP LKFIP VL E + + + + SPLA+ + ++ G+ Sbjct: 89 IFIQTENTPNPDALKFIPNHRVLPENFPTTFLEYLSPRSTLAPPHPSPLAASLLNVDGVT 148 Query: 53 SVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD-- 109 SV++G DFITV K +W H++P + +I + SG+ I++ + G + Sbjct: 149 SVFYGPDFITVTKATDSNWAHIKPEIFSLITQAVTSGEAIVNTVAKTGESGQEGGESESL 208 Query: 110 -FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 + E + V+ IKE+LD R+RPA+ DGGDI F+G+ +GIV L +RGAC C S++ TL Sbjct: 209 AYEEEEDEVIGMIKELLDTRIRPAIQEDGGDIEFRGFENGIVLLKLRGACRTCDSSTVTL 268 Query: 169 KYGVANILNHFVPEVKDIRTV 189 + G+ ++L H++ EV+ + V Sbjct: 269 RNGIESMLMHYIEEVQGVEQV 289 >gi|148555295|ref|YP_001262877.1| scaffold protein Nfu/NifU-like protein [Sphingomonas wittichii RW1] gi|148500485|gb|ABQ68739.1| Scaffold protein Nfu/NifU-like protein [Sphingomonas wittichii RW1] Length = 192 Score = 254 bits (649), Expect = 5e-66, Method: Composition-based stats. Identities = 90/189 (47%), Positives = 132/189 (69%), Gaps = 2/189 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M I+TE TPNPATLKF+PG+ V+ G F + EA SPLA +FS+ + V+FG DF Sbjct: 4 MLIETEPTPNPATLKFLPGRPVMTTGTRDFVDPDEASASPLAEALFSLGDVTGVFFGRDF 63 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ++V + +W L+P VLG++++HF S P+ G ++ +DD D +D+ +V Sbjct: 64 VSVTAAEGVEWTGLKPQVLGVLLDHFSSEAPLFTGGSAAEIAIDDSDFTD-DPADADIVA 122 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IK+++D RVRPAVARDGGDIV++G++ G V+LSM+GACSGCPS++ TLK G+ +L H+ Sbjct: 123 QIKDLIDTRVRPAVARDGGDIVYRGFQRGTVYLSMQGACSGCPSSAATLKQGIETLLKHY 182 Query: 180 VPEVKDIRT 188 VPEV ++R Sbjct: 183 VPEVTEVRA 191 >gi|168061090|ref|XP_001782524.1| predicted protein [Physcomitrella patens subsp. patens] gi|162666009|gb|EDQ52676.1| predicted protein [Physcomitrella patens subsp. patens] Length = 212 Score = 253 bits (648), Expect = 6e-66, Method: Composition-based stats. Identities = 82/192 (42%), Positives = 116/192 (60%), Gaps = 9/192 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQ E TPNP +L F PG+ V+ G+ F N++ A SPLA IF + G+ V+FG DF Sbjct: 14 MFIQVESTPNPQSLMFYPGKPVMEVGSSDFPNSRAAMASPLAKSIFIVDGVVRVFFGADF 73 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + W+ L+P + IM+ + + P+ ++ E D V Sbjct: 74 VTVTKSEDVSWDILKPEIFAAIMDFYATKQPLFYD------TQSQASDTAIHEDDDETVA 127 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAV DGGDI ++G+ GIV L M+GACSGCPS++ TLK G+ N+L Sbjct: 128 MIKELLETRIRPAVQDDGGDIEYRGFDPESGIVSLKMQGACSGCPSSAVTLKSGIENMLM 187 Query: 178 HFVPEVKDIRTV 189 H+V EVK ++ V Sbjct: 188 HYVSEVKGVQEV 199 >gi|329114732|ref|ZP_08243489.1| Scaffold Protein Nfu/NifU [Acetobacter pomorum DM001] gi|326695863|gb|EGE47547.1| Scaffold Protein Nfu/NifU [Acetobacter pomorum DM001] Length = 186 Score = 253 bits (648), Expect = 6e-66, Method: Composition-based stats. Identities = 100/192 (52%), Positives = 133/192 (69%), Gaps = 10/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE-GAIHFSNAKE-AEISPLASRIFSIPGIASVYFGY 58 MFI+TE TPNPATLKF+PGQ V+ + G I F +A A SPLA +F++PG++ V+ G Sbjct: 1 MFIETEGTPNPATLKFLPGQAVMGDAGTIDFIDADAVAGRSPLAEALFALPGVSRVFLGN 60 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 DF++V K D DWE LRP +L +M+HF++G P++ G + D + Sbjct: 61 DFVSVTKADSEDWEELRPQILSTLMDHFVAGHPVVAEGV-------AVTEDATAPEDEEI 113 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +IKE+LD RVRPAVA DGGDIVF+GYR+GIV L+M+GACSGCPS+ TLK+GV N+L Sbjct: 114 VTQIKELLDTRVRPAVAGDGGDIVFRGYRNGIVRLTMQGACSGCPSSRATLKHGVENMLR 173 Query: 178 HFVPEVKDIRTV 189 H+VPEV + V Sbjct: 174 HYVPEVVSVEQV 185 >gi|322798976|gb|EFZ20436.1| hypothetical protein SINV_01605 [Solenopsis invicta] Length = 226 Score = 253 bits (648), Expect = 6e-66, Method: Composition-based stats. Identities = 88/192 (45%), Positives = 120/192 (62%), Gaps = 9/192 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKFIPG VL EG F +AK+A SPLA +F I G+ +++FG D Sbjct: 15 MFIQTQDTPNPNSLKFIPGVSVLGEGCTKDFPSAKDAYCSPLAKMLFRIEGVKAIFFGPD 74 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 FITV K + +W+ L+P V IM+ F +G P++ D D + Sbjct: 75 FITVTKIDEDVEWKLLKPEVFATIMDFFATGLPVM------DETSQPAADTQINAEDDEI 128 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 VQ IKE+LD R+RP V DGGDIVF G+ +GIV L M+G+C+ CPS+ TL+ GV N++ Sbjct: 129 VQMIKELLDTRIRPTVQEDGGDIVFVGFEEGIVKLKMQGSCTNCPSSVVTLRNGVQNMMQ 188 Query: 178 HFVPEVKDIRTV 189 ++PEV + V Sbjct: 189 FYIPEVLGVIQV 200 >gi|322710719|gb|EFZ02293.1| NifU-like protein [Metarhizium anisopliae ARSEF 23] Length = 297 Score = 253 bits (647), Expect = 7e-66, Method: Composition-based stats. Identities = 83/199 (41%), Positives = 120/199 (60%), Gaps = 10/199 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE----GAIHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE+TPNP LKF+P V+ E I + N + SPLA+++ +I GI Sbjct: 73 IFIQTENTPNPDALKFLPNHRVVPEEINTPFIEYLNPRSTISPPYPSPLAAKLMNIDGIT 132 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLD-DMGSGDF 110 SV++G DFITV K +W H+RP + +I E SG+ I+ + D + S + Sbjct: 133 SVFYGADFITVTKAGDANWAHVRPEIFALITEAITSGETIVSIAERKEGDEDIEEDSLAY 192 Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 E+DS VV IKE+L+ R+RPA+ DGGDI F+G+ DG V L +RGAC C S++ TLK Sbjct: 193 NENDSEVVGMIKELLETRIRPAIQEDGGDIEFRGFDDGYVKLKLRGACRTCDSSTVTLKN 252 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ +L H++ EVK + + Sbjct: 253 GIEGMLMHYIEEVKGVHQI 271 >gi|225707158|gb|ACO09425.1| HIRA-interacting protein 5 [Osmerus mordax] Length = 268 Score = 253 bits (647), Expect = 7e-66, Method: Composition-based stats. Identities = 83/189 (43%), Positives = 115/189 (60%), Gaps = 10/189 (5%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 IQT+DTPNP +LKF+PG+ VL G + F + AE S LA +F I G+ SV+FG DFIT Sbjct: 66 IQTQDTPNPRSLKFLPGKPVLGTGTLDFPTPQNAECSSLAKDLFEIEGVKSVFFGPDFIT 125 Query: 63 VGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 V K D +W +++ + I + F SG PI + E D +V Sbjct: 126 VTKADDDVEWTNIKRHAVEAITKFFDSGAPITTGVSHHESS--------HSEDDDEIVSI 177 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+LD R+RP V DGGD++FKG+ DG V L + G+C+GCPS+S TL+ G+ N+L ++ Sbjct: 178 IKELLDTRIRPTVQEDGGDVIFKGFEDGTVKLKLVGSCTGCPSSSVTLRNGIQNMLQFYI 237 Query: 181 PEVKDIRTV 189 PEV D+ V Sbjct: 238 PEVDDVEQV 246 >gi|171689560|ref|XP_001909720.1| hypothetical protein [Podospora anserina S mat+] gi|170944742|emb|CAP70853.1| unnamed protein product [Podospora anserina S mat+] Length = 323 Score = 253 bits (647), Expect = 8e-66, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 121/207 (58%), Gaps = 18/207 (8%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE TPN +LKF+P VL E + + + + SPLA+ + ++ G+ Sbjct: 77 IFIQTEPTPNANSLKFLPNHPVLPESISTPFVEYLSPRSTISPPYPSPLAANLMNVDGVT 136 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH---------NGGLGDMKL 102 SV++G DFITV K W H+RP + +I E SG P+++ + + + Sbjct: 137 SVFYGQDFITVTKSADAVWAHIRPEIFSLITEAITSGQPLVNISQQSASSPSTAEQEQES 196 Query: 103 DDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCP 162 + S ++ E+DS VV IKE+L+ R+RPA+ DGGDI F+G+ +GIV L +RGAC C Sbjct: 197 GERDSLEYDENDSEVVGMIKELLETRIRPAIQEDGGDIEFRGFENGIVMLKLRGACRTCD 256 Query: 163 SASETLKYGVANILNHFVPEVKDIRTV 189 S++ TLK G+ +L H++ EV+ + V Sbjct: 257 SSTVTLKNGIEGMLMHYIEEVQGVEQV 283 >gi|255940800|ref|XP_002561169.1| Pc16g08500 [Penicillium chrysogenum Wisconsin 54-1255] gi|211585792|emb|CAP93520.1| Pc16g08500 [Penicillium chrysogenum Wisconsin 54-1255] Length = 320 Score = 253 bits (647), Expect = 8e-66, Method: Composition-based stats. Identities = 81/200 (40%), Positives = 118/200 (59%), Gaps = 11/200 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE----GAIHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE+TPNP LKFIP VL E + + + + SPLA+++ + G+ Sbjct: 84 IFIQTENTPNPDALKFIPNHRVLPEDFPSTFLEYMSPRSTLAPPHPSPLAAKLLDVEGVT 143 Query: 53 SVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIH--NGGLGDMKLDDMGSGD 109 SV++G DFITV K +W H++P V +I + SG+ I+ G + + S Sbjct: 144 SVFYGTDFITVTKGSDANWAHIKPEVFSIITQAVTSGETIVTTIEGAVDGEQESGEDSLS 203 Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 F E D VV IKE+L+ R+RPA+ DGGDI KG+ +GIV L +RGAC C S++ TLK Sbjct: 204 FNEDDDEVVSMIKELLETRIRPAIQEDGGDIELKGFENGIVMLKLRGACRTCDSSTVTLK 263 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ ++L H++ EVK + V Sbjct: 264 NGIESMLMHYIEEVKGVEQV 283 >gi|225710000|gb|ACO10846.1| NFU1 iron-sulfur cluster scaffold homolog [Caligus rogercresseyi] Length = 237 Score = 253 bits (647), Expect = 9e-66, Method: Composition-based stats. Identities = 78/194 (40%), Positives = 116/194 (59%), Gaps = 11/194 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLV--EGAIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 M+I+T++TPNP +LKF+PG VL + F A SPLA +F + G+ V+FG Sbjct: 27 MYIRTQETPNPQSLKFLPGVRVLETAGSTLDFPTPSAAYCSPLAKLLFRVDGVKGVFFGQ 86 Query: 59 DFITVGKDQ---YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDS 115 DFIT+ K++ +W+ ++P V +M+ F SG PI++ + E Sbjct: 87 DFITITKEEDSEVEWKVIKPEVYATLMDFFASGLPIVNE------DAKPHSDTEIHEDGD 140 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE+LD+R+RP V DGGDI+F G+ DGIV L M+G+C+ CPS+ TLK GV N+ Sbjct: 141 DTVAMIKELLDSRIRPTVQEDGGDIIFMGFEDGIVKLKMQGSCTSCPSSIVTLKNGVQNM 200 Query: 176 LNHFVPEVKDIRTV 189 L ++PEV ++ + Sbjct: 201 LQFYIPEVIEVEQI 214 >gi|226292348|gb|EEH47768.1| HIRA interacting protein [Paracoccidioides brasiliensis Pb18] Length = 317 Score = 253 bits (647), Expect = 9e-66, Method: Composition-based stats. Identities = 81/199 (40%), Positives = 121/199 (60%), Gaps = 10/199 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE----GAIHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE+TPN LKFIP VL E + + + + SPLAS++ ++ G++ Sbjct: 82 IFIQTENTPNADALKFIPNHSVLPENFPTTFLEYLSPRSTLAPPYPSPLASKLLNVDGVS 141 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH-NGGLGDMKLDDMGSGDF 110 +V++G DFIT+ K +W H++P V +I E +GDPI+ + K + S + Sbjct: 142 AVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTAGDPIVTISEAGAGSKAQEEDSLSY 201 Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 E D VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C S++ TLK Sbjct: 202 NEDDDEVVGMIKELLETRIRPAIQEDGGDIEFRGFEDGIVNLKLRGACRTCDSSTVTLKN 261 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ ++L H++ EVK + V Sbjct: 262 GIESMLMHYIEEVKGVNQV 280 >gi|154291187|ref|XP_001546179.1| NifU-like protein [Botryotinia fuckeliana B05.10] gi|150847081|gb|EDN22274.1| NifU-like protein [Botryotinia fuckeliana B05.10] Length = 313 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 78/200 (39%), Positives = 119/200 (59%), Gaps = 11/200 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE----GAIHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTEDTPNP LKF+P ++ + I + N + SPLA+ + +I G+ Sbjct: 76 IFIQTEDTPNPDALKFLPNHPIIPQDVNSPFIEYLNPRSTLAPPYPSPLAASLMNIDGVK 135 Query: 53 SVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIH--NGGLGDMKLDDMGSGD 109 SV++G +FITV K + +W H++P V +I E SG I++ + ++ S Sbjct: 136 SVFYGANFITVTKVEDANWAHIKPEVFSLITEAVTSGAQIVNITERTGASGEPEEEDSLA 195 Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 + E D VV IKE+L+ R+RPA+ DGGDI ++G+ DG+V L +RGAC C S++ TLK Sbjct: 196 YNEDDPEVVGMIKELLETRIRPAIQEDGGDIDYRGFEDGLVKLKLRGACRTCDSSTVTLK 255 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ +L H++ EVK + V Sbjct: 256 NGIEGMLMHYIEEVKGVVQV 275 >gi|326430239|gb|EGD75809.1| HIRA-interacting protein 5 [Salpingoeca sp. ATCC 50818] Length = 269 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 83/190 (43%), Positives = 111/190 (58%), Gaps = 7/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT DTPNP +L F PG V G F+ + SPLA + I G+ V+ G DF Sbjct: 61 MFIQTRDTPNPNSLMFYPGTEVTGTGTADFARGGDTSKSPLARVLLRIDGVQGVFLGPDF 120 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 IT+ K++ DW ++P + G IM+ F S P++ G + E D VV Sbjct: 121 ITISKEEDVDWGVMKPHIFGSIMDFFASNQPVLLEGEEANAASTAS------EEDDEVVS 174 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+LD R+RPAV DGGDI+F + +GIV L + GAC GCPS+ TLK GV N+L H+ Sbjct: 175 MIKELLDTRIRPAVQDDGGDIIFMEFTNGIVKLKLSGACEGCPSSMYTLKQGVENMLMHY 234 Query: 180 VPEVKDIRTV 189 +PEV+ + V Sbjct: 235 IPEVEGVEQV 244 >gi|225680672|gb|EEH18956.1| HIRA-interacting protein [Paracoccidioides brasiliensis Pb03] Length = 317 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 81/199 (40%), Positives = 121/199 (60%), Gaps = 10/199 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE----GAIHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE+TPN LKFIP VL E + + + + SPLAS++ ++ G++ Sbjct: 82 IFIQTENTPNADALKFIPNHSVLPENFPTTFLEYLSPRSTLAPPYPSPLASKLLNVDGVS 141 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH-NGGLGDMKLDDMGSGDF 110 +V++G DFIT+ K +W H++P V +I E +GDPI+ + K + S + Sbjct: 142 AVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTAGDPIVTISEAGAGSKAQEEDSLSY 201 Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 E D VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C S++ TLK Sbjct: 202 NEDDDEVVGMIKELLETRIRPAIQEDGGDIEFRGFEDGIVNLKLRGACRTCDSSTVTLKN 261 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ ++L H++ EVK + V Sbjct: 262 GIESMLMHYIEEVKGVNQV 280 >gi|307215410|gb|EFN90079.1| NFU1 iron-sulfur cluster scaffold-like protein, mitochondrial [Harpegnathos saltator] Length = 265 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 90/192 (46%), Positives = 118/192 (61%), Gaps = 13/192 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKFIPG VL EG F NAK+A SPLA +F I G+ +++FG D Sbjct: 56 MFIQTQDTPNPNSLKFIPGVSVLGEGCTKDFPNAKDAYCSPLAKMLFRIEGVKAIFFGPD 115 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 FITV K + +W+ L+P + IM+ F SG PI+ L D V Sbjct: 116 FITVTKLDEDIEWKLLKPEIFATIMDFFASGLPIMDESQLA-------ADTQISTDDDEV 168 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 VQ IKE+LD R+RP V DGGDI G+ +GIV L M+G+C+ CPS+ TL+ GV N++ Sbjct: 169 VQMIKELLDTRIRPTVQEDGGDI---GFEEGIVKLKMQGSCTNCPSSVVTLRNGVQNMMQ 225 Query: 178 HFVPEVKDIRTV 189 ++PEV I V Sbjct: 226 FYIPEVLGIIQV 237 >gi|258541120|ref|YP_003186553.1| nitrogen fixing thioredoxin-like protein NifU [Acetobacter pasteurianus IFO 3283-01] gi|256632198|dbj|BAH98173.1| nitrogen fixing thioredoxin-like protein NifU [Acetobacter pasteurianus IFO 3283-01] gi|256635255|dbj|BAI01224.1| nitrogen fixing thioredoxin-like protein NifU [Acetobacter pasteurianus IFO 3283-03] gi|256638310|dbj|BAI04272.1| nitrogen fixing thioredoxin-like protein NifU [Acetobacter pasteurianus IFO 3283-07] gi|256641364|dbj|BAI07319.1| nitrogen fixing thioredoxin-like protein NifU [Acetobacter pasteurianus IFO 3283-22] gi|256644419|dbj|BAI10367.1| nitrogen fixing thioredoxin-like protein NifU [Acetobacter pasteurianus IFO 3283-26] gi|256647474|dbj|BAI13415.1| nitrogen fixing thioredoxin-like protein NifU [Acetobacter pasteurianus IFO 3283-32] gi|256650527|dbj|BAI16461.1| nitrogen fixing thioredoxin-like protein NifU [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653518|dbj|BAI19445.1| nitrogen fixing thioredoxin-like protein NifU [Acetobacter pasteurianus IFO 3283-12] Length = 186 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 99/192 (51%), Positives = 132/192 (68%), Gaps = 10/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE-GAIHFSNAKE-AEISPLASRIFSIPGIASVYFGY 58 MFI+TE TPNPATLKF+PGQ V+ + G I F +A A S LA +F++PG++ V+ G Sbjct: 1 MFIETEGTPNPATLKFLPGQAVMGDAGTIDFIDADAVAGRSSLAEALFALPGVSRVFLGN 60 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 DF++V K D DWE LRP +L +M+HF++G P++ G + D + Sbjct: 61 DFVSVTKADSEDWEELRPQILSTLMDHFVAGHPVVAEGV-------AVTEDAIAPEDEEI 113 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +IKE+LD RVRPAVA DGGDIVF+GYR+GIV L+M+GACSGCPS+ TLK+GV N+L Sbjct: 114 VTQIKELLDTRVRPAVAGDGGDIVFRGYRNGIVRLTMQGACSGCPSSRATLKHGVENMLR 173 Query: 178 HFVPEVKDIRTV 189 H+VPEV + V Sbjct: 174 HYVPEVVSVEQV 185 >gi|268570156|ref|XP_002648431.1| C. briggsae CBR-LPD-8 protein [Caenorhabditis briggsae] gi|187039912|emb|CAP21246.1| CBR-LPD-8 protein [Caenorhabditis briggsae AF16] Length = 228 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 82/193 (42%), Positives = 119/193 (61%), Gaps = 12/193 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG--AIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 M+IQ ++TPNP +LKF+PGQ +L + FS+A A+ SPLA ++ + G+ V+FG Sbjct: 21 MYIQVQETPNPLSLKFLPGQQLLPDASKTYDFSSAATAKQSPLAIKLLRVDGVKRVFFGE 80 Query: 59 DFITVGKDQ--YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 DFITV K DW LRP + I +H +G +I+ + + E D+ Sbjct: 81 DFITVTKSDETVDWALLRPEIFSTIADHLQTGKSVINEASATAGEAE--------EDDNE 132 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 VV IKE+L+ R+RP V DGGDI + G+ DG+V L M+G+C+GCPS+ TLK G+ N+L Sbjct: 133 VVMMIKEILETRIRPMVQEDGGDITYVGFDDGVVKLKMQGSCTGCPSSGVTLKNGIENML 192 Query: 177 NHFVPEVKDIRTV 189 +VPEVK++ V Sbjct: 193 TFYVPEVKEVIEV 205 >gi|156389173|ref|XP_001634866.1| predicted protein [Nematostella vectensis] gi|156221954|gb|EDO42803.1| predicted protein [Nematostella vectensis] Length = 186 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 119/191 (62%), Gaps = 10/191 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQ ++TPNP +LKF+PG +VL G ++F ++ A SPLA +F I G+ V FG +F Sbjct: 1 MFIQVQETPNPNSLKFVPGVLVLESGTVNFDSSSSAHRSPLARNLFRINGVKGVMFGPEF 60 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K ++ W L+P + IM+ F S PI+ + D GS +D V Sbjct: 61 ITVTKSDEEVQWSVLKPEIFATIMDFFSSNLPIMTE----EEPPQDTGSC----NDDDTV 112 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDI+FKG++DGIV L M+GAC+ CPS+ TLK G+ N++ Sbjct: 113 LMIKELLDTRIRPTVQEDGGDIIFKGFKDGIVKLKMQGACASCPSSIVTLKNGIENMMQF 172 Query: 179 FVPEVKDIRTV 189 ++PEV + V Sbjct: 173 YIPEVVSVEQV 183 >gi|296282499|ref|ZP_06860497.1| hypothetical protein CbatJ_02705 [Citromicrobium bathyomarinum JL354] Length = 192 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 84/191 (43%), Positives = 131/191 (68%), Gaps = 3/191 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M+I+TE TPNPATLKF+P + V+ +G F+N ++AE SPLA +F + V+FG DF Sbjct: 1 MYIETETTPNPATLKFLPQRQVMPQGTRDFANPEDAEASPLAQALFDTGEVTGVFFGSDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIES--DSAV 117 ++V K + W L+P ++ ++++HF+S P+ H G +++ + E D+ + Sbjct: 61 VSVTKGEGTQWTELKPQIVAVLLDHFVSEAPLFHGGSAAGIEVPAEDTLTVEEDPADADI 120 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +IKE+L+ R+RPAVA DGGDI ++GYRDG+V L ++GAC GCPS++ TLK+G+ +L Sbjct: 121 VDQIKELLETRIRPAVAGDGGDIAYRGYRDGVVHLQLQGACDGCPSSTATLKHGIEGLLK 180 Query: 178 HFVPEVKDIRT 188 H+VPEV ++R Sbjct: 181 HYVPEVVEVRA 191 >gi|83944990|ref|ZP_00957356.1| nifU domain protein [Oceanicaulis alexandrii HTCC2633] gi|83851772|gb|EAP89627.1| nifU domain protein [Oceanicaulis alexandrii HTCC2633] Length = 186 Score = 252 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 94/192 (48%), Positives = 125/192 (65%), Gaps = 10/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTEDTPNP TLKF+PGQ V ++ F+ +EAE S LA +F + G+ V+ G DF Sbjct: 1 MFIQTEDTPNPDTLKFLPGQSVSLDAPRDFATPEEAESSYLARELFRVEGVIRVFAGQDF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I+V K + DW H++P VLG IM+ SG + + DD G + + +V+ Sbjct: 61 ISVTKAEGVDWPHIKPAVLGAIMDCLESGKSLFSDA-------DDDGHAAYEGEAAGIVK 113 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILN 177 IK+V+D RVRPAVARDGGDIVF Y + G+V L MRGAC+GCPS++ TLK G+ N+L Sbjct: 114 EIKDVIDTRVRPAVARDGGDIVFHSYDEATGVVNLHMRGACAGCPSSTMTLKQGIENLLK 173 Query: 178 HFVPEVKDIRTV 189 H+VPEV + V Sbjct: 174 HYVPEVSSVEAV 185 >gi|58039243|ref|YP_191207.1| NifU protein [Gluconobacter oxydans 621H] gi|58001657|gb|AAW60551.1| NifU protein [Gluconobacter oxydans 621H] Length = 212 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 94/192 (48%), Positives = 123/192 (64%), Gaps = 10/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE-GAIHFSNAK-EAEISPLASRIFSIPGIASVYFGY 58 MFI+TEDTPNPATLKF+PG+ V + + F +A A S LAS +F P + V+ G Sbjct: 26 MFIETEDTPNPATLKFLPGRSVTGDARPVDFGDADVAAGRSELASALFDQPNVRRVFLGG 85 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 DF++V K D W L+P VLG I F SG P++ D D+ V Sbjct: 86 DFVSVTKSDDISWGDLKPVVLGTITTFFESGRPVLSG-------TQAAPEHDVSPEDAEV 138 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V RI+++LD RVRPAVA DGGDI F+GY+DG+V+L+M+GACSGCPS+ TLK+GV N+L Sbjct: 139 VSRIQDLLDTRVRPAVAGDGGDIAFRGYKDGVVYLAMQGACSGCPSSRATLKHGVENMLR 198 Query: 178 HFVPEVKDIRTV 189 H+VPEV + V Sbjct: 199 HYVPEVASVEQV 210 >gi|327348799|gb|EGE77656.1| HIRA-interacting protein 5 [Ajellomyces dermatitidis ATCC 18188] Length = 318 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 79/199 (39%), Positives = 120/199 (60%), Gaps = 10/199 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEAEI----SPLASRIFSIPGIA 52 +FIQTE TPN LKF P VL E + + + + SPLA+++ ++ G++ Sbjct: 82 IFIQTETTPNADALKFNPNHPVLPENFPTSFVEYLSPRSTLTPPYPSPLAAKLLNVDGVS 141 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDM-KLDDMGSGDF 110 +V++G DFIT+ K +W H++P V +I E +G+PII+ G + S + Sbjct: 142 AVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTTGEPIINVAEAGAGGPPPEEDSLSY 201 Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 E D VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C S++ TLK Sbjct: 202 NEDDDEVVSMIKELLETRIRPAIQEDGGDIEFRGFEDGIVSLKLRGACRTCDSSTVTLKN 261 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ ++L H++ EVK++ V Sbjct: 262 GIESMLMHYIEEVKEVNHV 280 >gi|90420546|ref|ZP_01228453.1| putative nitrogen-fixing NifU domain protein [Aurantimonas manganoxydans SI85-9A1] gi|90335274|gb|EAS49027.1| putative nitrogen-fixing NifU domain protein [Aurantimonas manganoxydans SI85-9A1] Length = 191 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 98/180 (54%), Positives = 129/180 (71%), Gaps = 3/180 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEI-SPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNPATLKF+PG+VVL G F + ++A SPLA+R+ +PG+ V+FGYD Sbjct: 1 MFIQTEVTPNPATLKFLPGRVVLESGTEEFLSKEDAANRSPLAARLMDVPGVTGVFFGYD 60 Query: 60 FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 F+TV KD DW+HL+P +L +MEHF+ +P++ G D G F D V Sbjct: 61 FVTVSKDGPDWQHLKPAILAGLMEHFMGNEPVMTAQGSNAAMPD--GEEFFEPGDEGTVA 118 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+L+ RVRPAVA+DGGDI F+GYRDG V+L+MRGAC+GCPS++ TLK+G+ N+L HF Sbjct: 119 TIKELLETRVRPAVAQDGGDITFRGYRDGTVYLNMRGACAGCPSSTATLKHGIQNLLRHF 178 >gi|225711844|gb|ACO11768.1| NFU1 iron-sulfur cluster scaffold homolog [Lepeophtheirus salmonis] Length = 238 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 80/194 (41%), Positives = 117/194 (60%), Gaps = 11/194 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLV--EGAIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 M+I+T++TPNP +LKF+PG VL I F A SPLA +F + G+ V+FG Sbjct: 29 MYIRTQETPNPQSLKFLPGVPVLETAGSTIDFPQPSAAFCSPLAKLLFRVEGVKGVFFGP 88 Query: 59 DFITVGKDQ---YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDS 115 DFIT+ K++ +W+ ++P + IM+ F SG PI++ + E D Sbjct: 89 DFITITKEEEVNAEWKLMKPLIYATIMDFFASGLPIVNE------DAKPHSDTEIHEDDD 142 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE+LD+R+RP V DGGDIVF G+ DG+V L M+G+C+ CPS+ TLK GV N+ Sbjct: 143 DTVAMIKELLDSRIRPTVQEDGGDIVFMGFDDGVVKLKMQGSCTSCPSSIVTLKNGVQNM 202 Query: 176 LNHFVPEVKDIRTV 189 L ++PEV ++ + Sbjct: 203 LQFYIPEVLEVEQI 216 >gi|4836948|gb|AAD30650.1|AC006085_23 Similar to human CGI-33 protein [Arabidopsis thaliana] Length = 304 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 85/220 (38%), Positives = 119/220 (54%), Gaps = 37/220 (16%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIP----------- 49 MFIQT+ TPNP++L F PG+ V+ G+ F N++ A SPLA IF+I Sbjct: 75 MFIQTQSTPNPSSLMFSPGKPVMEIGSADFPNSRSAMSSPLAKAIFAIDGIPRLLLQHTI 134 Query: 50 ------------------GIASVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDP 90 G+ V++G DF+TV K D W+ L+P + ++M+ + SG P Sbjct: 135 VSSSYNPCFVTKIVSVDAGVVRVFYGSDFVTVTKSDDVTWDILKPDIFAVVMDFYSSGQP 194 Query: 91 IIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDG 148 + + K E DS V IKE+L+ R+RP+V DGGDI + G+ G Sbjct: 195 LFLDSQATAAK-----DTAIHEDDSETVAMIKELLETRIRPSVQDDGGDIEYCGFDTETG 249 Query: 149 IVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 IV L M+GACSGCPS+S TLK G+ N+L H+V EVK + Sbjct: 250 IVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSEVKGVEQ 289 >gi|331214376|ref|XP_003319869.1| iron-sulfur cluster scaffold protein Nfu [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309298859|gb|EFP75450.1| iron-sulfur cluster scaffold protein Nfu [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 357 Score = 250 bits (640), Expect = 5e-65, Method: Composition-based stats. Identities = 78/193 (40%), Positives = 117/193 (60%), Gaps = 6/193 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +FIQTE TPN LKFIPG+ V+ G+ F + SPLA + S+ G+ SV+FG DF Sbjct: 139 IFIQTEPTPNADALKFIPGRPVMKSGSREFLKGDDTRSSPLARSLLSVEGVKSVFFGPDF 198 Query: 61 ITVGKD-QYDWEHLRPPVLGMIMEHFI-SGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 I++ K+ + W ++P + ++ME F S P++ G + + + DS VV Sbjct: 199 ISINKESEVGWPTMKPEIYSLLMEFFSASDRPVVQEGPIEE--ESGPLDTRIHDDDSEVV 256 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+LD RVRPA+ DGGD+ +KG+ G+V L ++G+C GC S++ TLK G+ +L Sbjct: 257 AMIKELLDTRVRPAIQEDGGDLEYKGFNEETGVVQLMLKGSCRGCDSSAVTLKSGIERML 316 Query: 177 NHFVPEVKDIRTV 189 H+VPEV+ + V Sbjct: 317 MHYVPEVQCVEQV 329 >gi|261194942|ref|XP_002623875.1| HIRA-interacting protein 5 [Ajellomyces dermatitidis SLH14081] gi|239587747|gb|EEQ70390.1| HIRA-interacting protein 5 [Ajellomyces dermatitidis SLH14081] Length = 318 Score = 250 bits (640), Expect = 5e-65, Method: Composition-based stats. Identities = 79/199 (39%), Positives = 120/199 (60%), Gaps = 10/199 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEAEI----SPLASRIFSIPGIA 52 +FIQTE TPN LKF P VL E + + + + SPLA+++ ++ G++ Sbjct: 82 IFIQTETTPNADALKFNPNHPVLPENFPTSFVEYLSPRSTLTPPYPSPLAAKLLNVDGVS 141 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDM-KLDDMGSGDF 110 +V++G DFIT+ K +W H++P V +I E +G+PII+ G + S + Sbjct: 142 AVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTTGEPIINVAEAGAGGPPPEEDSLSY 201 Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 E D VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C S++ TLK Sbjct: 202 NEDDDEVVSMIKELLETRIRPAIQEDGGDIEFRGFEDGIVSLKLRGACRTCDSSTVTLKN 261 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ ++L H++ EVK++ V Sbjct: 262 GIESMLMHYIEEVKEVNHV 280 >gi|239610759|gb|EEQ87746.1| HIRA-interacting protein 5 [Ajellomyces dermatitidis ER-3] Length = 318 Score = 250 bits (640), Expect = 6e-65, Method: Composition-based stats. Identities = 79/199 (39%), Positives = 120/199 (60%), Gaps = 10/199 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEAEI----SPLASRIFSIPGIA 52 +FIQTE TPN LKF P VL E + + + + SPLA+++ ++ G++ Sbjct: 82 IFIQTETTPNADALKFNPNHPVLPENFPTSFVEYLSPRSTLTPPYPSPLAAKLLNVDGVS 141 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDM-KLDDMGSGDF 110 +V++G DFIT+ K +W H++P V +I E +G+PII+ G + S + Sbjct: 142 AVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTTGEPIINVAEAGAGGPPPEEDSLSY 201 Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 E D VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C S++ TLK Sbjct: 202 NEDDDEVVSMIKELLETRIRPAIQEDGGDIEFRGFEDGIVSLKLRGACRTCDSSTVTLKN 261 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ ++L H++ EVK++ V Sbjct: 262 GIESMLMHYIEEVKEVNHV 280 >gi|325303172|tpg|DAA34414.1| TPA_inf: NifU-like domain-containing protein [Amblyomma variegatum] Length = 217 Score = 250 bits (639), Expect = 6e-65, Method: Composition-based stats. Identities = 76/175 (43%), Positives = 111/175 (63%), Gaps = 5/175 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP LKF+P VL +G F N A+ SPLA +F + G+ +V+ G DF Sbjct: 46 MFIQTQDTPNPNCLKFLPNAKVLEQGTRDFPNIGSAKNSPLARHLFRVEGVKAVFLGPDF 105 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K D+ +W+ ++P + IM+ F +G P++ +G +D E DS V Sbjct: 106 ITVTKVDDETEWKVIKPHIFAAIMDFFTTGLPVLDDGSASTQVSED---TQPREGDSETV 162 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 IKE+++ R+RP V DGGDI++ G+ DG+V L ++G+C+GCPS+S TLK G+ Sbjct: 163 LAIKELIETRIRPTVQEDGGDILYMGFEDGVVKLKLQGSCTGCPSSSVTLKAGIQ 217 >gi|114799747|ref|YP_759252.1| NifU domain-containing protein [Hyphomonas neptunium ATCC 15444] gi|114739921|gb|ABI78046.1| NifU domain protein [Hyphomonas neptunium ATCC 15444] Length = 192 Score = 250 bits (639), Expect = 7e-65, Method: Composition-based stats. Identities = 87/192 (45%), Positives = 121/192 (63%), Gaps = 6/192 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE-GAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPNP T+KF+PGQ V+ + G F +A A S LA +F + G+ V+ G D Sbjct: 1 MFIQTEATPNPDTIKFLPGQPVVGDRGPFDFPDAASARTSLLARALFQVEGVERVFLGSD 60 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+++ K DW H++P VL IM+H++SG P+I G D ++ + +V Sbjct: 61 FVSINKAQDKDWRHVKPMVLAAIMDHYMSGLPVIEEGTSSASSGAD--ETEYEGETAEIV 118 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+++ RVRPAVA+DGGDI F + GIV LSMRGAC+GCPS++ TLK G+ N+L Sbjct: 119 NEIKELIETRVRPAVAQDGGDITFHRFDADTGIVHLSMRGACAGCPSSTMTLKQGIENML 178 Query: 177 NHFVPEVKDIRT 188 +VPEV + Sbjct: 179 RTYVPEVTAVEA 190 >gi|62202252|gb|AAH92870.1| Zgc:110319 [Danio rerio] gi|182890178|gb|AAI64833.1| Zgc:110319 [Danio rerio] Length = 256 Score = 250 bits (639), Expect = 7e-65, Method: Composition-based stats. Identities = 78/189 (41%), Positives = 114/189 (60%), Gaps = 10/189 (5%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I T+DTPNP +LKF+PG+ VL G F + AE SPLA +F I GI SV++G DFIT Sbjct: 54 ILTQDTPNPRSLKFLPGKPVLGSGTQDFPTSASAESSPLARDLFQISGIKSVFYGPDFIT 113 Query: 63 VGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 + K D +W ++ + +I + F G+ I + + E D +V Sbjct: 114 LTKTDDDVEWTDIKRHAIEVIRKFFEGGEAITTGAAHAESSVT--------EDDDEIVSL 165 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+LD R+RP V DGGD++FKG+ DG V L + G+C+GCPS++ TLK G+ N++ ++ Sbjct: 166 IKELLDTRIRPTVQEDGGDVIFKGFEDGTVKLKLVGSCTGCPSSTVTLKNGIQNMMQFYI 225 Query: 181 PEVKDIRTV 189 PEV ++ V Sbjct: 226 PEVDNVEQV 234 >gi|225707504|gb|ACO09598.1| HIRA-interacting protein 5 [Osmerus mordax] Length = 263 Score = 250 bits (639), Expect = 7e-65, Method: Composition-based stats. Identities = 82/189 (43%), Positives = 115/189 (60%), Gaps = 11/189 (5%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 IQT+DTPNP +LKF+PG+ VL G + F + AE S LA +F I G+ SV+FG DFIT Sbjct: 62 IQTQDTPNPRSLKFLPGKPVLGTGTLDFPTPQNAECSSLAKDLFEIEGVKSVFFGPDFIT 121 Query: 63 VGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 V K D +W +++ + I + F SG PI + + D +V Sbjct: 122 VTKADDDVEWTNIKRHAVEAITKFFDSGAPITTGVSHHESSHSE---------DDEIVSI 172 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+LD R+RP V DGGD++FKG+ DG V L + G+C+GCPS+S TL+ G+ N+L ++ Sbjct: 173 IKELLDTRIRPTVQEDGGDVIFKGFEDGTVKLKLVGSCTGCPSSSVTLRNGIQNMLQFYI 232 Query: 181 PEVKDIRTV 189 PEV D+ V Sbjct: 233 PEVDDVEQV 241 >gi|17541876|ref|NP_501917.1| LiPid Depleted family member (lpd-8) [Caenorhabditis elegans] gi|3879150|emb|CAA94609.1| C. elegans protein R10H10.1, confirmed by transcript evidence [Caenorhabditis elegans] Length = 222 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 83/193 (43%), Positives = 119/193 (61%), Gaps = 13/193 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG--AIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 M+IQ ++TPNP +LKF+PGQ +L + FS+A A+ SPLA ++ + G+ V+FG Sbjct: 16 MYIQVQETPNPLSLKFLPGQQLLPDASKTYDFSSAATAKQSPLAIKLLRVDGVKRVFFGE 75 Query: 59 DFITVGKDQ--YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 DF+TV K DW LRP + I +H +G P+I+ D +E D Sbjct: 76 DFVTVTKSDETVDWALLRPEIFSTIADHIQTGKPVINEAATVS---------DQVEEDDE 126 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 VV IKE+L+ R+RP V DGGDI + G+ DG+V L M+G+C+GCPS+ TLK G+ N+L Sbjct: 127 VVMMIKEILETRIRPMVQEDGGDITYVGFDDGVVKLKMQGSCTGCPSSGVTLKNGIENML 186 Query: 177 NHFVPEVKDIRTV 189 +VPEVK++ V Sbjct: 187 TFYVPEVKEVIEV 199 >gi|213624625|gb|AAI71359.1| Zgc:110319 [Danio rerio] Length = 256 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 78/189 (41%), Positives = 114/189 (60%), Gaps = 10/189 (5%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I T+DTPNP +LKF+PG+ VL G F + AE SPLA +F I GI SV++G DFIT Sbjct: 54 ILTQDTPNPRSLKFLPGKPVLGTGTQDFPTSASAESSPLARDLFQISGIKSVFYGPDFIT 113 Query: 63 VGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 + K D +W ++ + +I + F G+ I + + E D +V Sbjct: 114 LTKTDDDVEWTDIKRHAIEVIRKFFEGGEAITTGAAHAESSVT--------EDDDEIVSL 165 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+LD R+RP V DGGD++FKG+ DG V L + G+C+GCPS++ TLK G+ N++ ++ Sbjct: 166 IKELLDTRIRPTVQEDGGDVIFKGFEDGTVKLKLVGSCTGCPSSTVTLKNGIQNMMQFYI 225 Query: 181 PEVKDIRTV 189 PEV ++ V Sbjct: 226 PEVDNVEQV 234 >gi|242802638|ref|XP_002484011.1| NifU-related protein [Talaromyces stipitatus ATCC 10500] gi|218717356|gb|EED16777.1| NifU-related protein [Talaromyces stipitatus ATCC 10500] Length = 290 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 78/194 (40%), Positives = 115/194 (59%), Gaps = 14/194 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE TPNP LKF+P VL E + + + + SPLA+++ ++ G++ Sbjct: 81 IFIQTESTPNPDALKFLPNHRVLPENFPTPFLEYLSPRSTLAPPHPSPLAAKLLNVEGVS 140 Query: 53 SVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG--- 108 SV++G DFITV K +W H++P V +I E SG+PI++ D G Sbjct: 141 SVFYGPDFITVTKQSDVNWAHIKPEVFSLITEVVTSGEPIVNTVERTSGAQDAQEGGGED 200 Query: 109 --DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + E D VV IKE+L+ R+RPA+ DGGDI F+G+ +GIV L +RGAC C S++ Sbjct: 201 TLSYNEEDDEVVGMIKELLETRIRPAIQEDGGDIEFRGFENGIVLLKLRGACRTCDSSTV 260 Query: 167 TLKYGVANILNHFV 180 TLK G+ ++L H+V Sbjct: 261 TLKNGIESMLMHYV 274 >gi|308492754|ref|XP_003108567.1| CRE-LPD-8 protein [Caenorhabditis remanei] gi|308248307|gb|EFO92259.1| CRE-LPD-8 protein [Caenorhabditis remanei] Length = 223 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 81/193 (41%), Positives = 121/193 (62%), Gaps = 12/193 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG--AIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 M+IQ ++TPNP +LKF+PGQ +L + F++A A+ SPLA ++ + G+ V+FG Sbjct: 16 MYIQVQETPNPLSLKFLPGQQLLPDASKTYDFNSAAAAKQSPLAVKLLRVDGVKRVFFGE 75 Query: 59 DFITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 DF+TV K + DW LRP + I +H +G P+I+ D + + D+ Sbjct: 76 DFVTVTKADEHVDWALLRPEIFSTIADHLQTGKPVINEVAATDGEAEV--------EDNE 127 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 VV IKE+L+ R+RP V DGGDI + G+ DG+V L M+G+C+GCPS+ TLK G+ N+L Sbjct: 128 VVMMIKEILETRIRPMVQEDGGDITYVGFDDGVVKLKMQGSCTGCPSSGVTLKNGIENML 187 Query: 177 NHFVPEVKDIRTV 189 +VPEVK++ V Sbjct: 188 TFYVPEVKEVIEV 200 >gi|170084143|ref|XP_001873295.1| predicted protein [Laccaria bicolor S238N-H82] gi|164650847|gb|EDR15087.1| predicted protein [Laccaria bicolor S238N-H82] Length = 212 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 79/193 (40%), Positives = 119/193 (61%), Gaps = 6/193 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPN +LKFI G V+ +G F + + A ISPLA R+ + G++ V++G DF Sbjct: 1 MFIQTETTPNEDSLKFILGVPVMGDGTAEFLDTRSALISPLAIRLMGVEGVSGVFYGPDF 60 Query: 61 ITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV KD ++ W ++P + +IME F SG + + + +++DS V Sbjct: 61 VTVSKDSEHRWAVVKPEIYSIIMEFFSSGQKLFRTDE--EREQAGPQDTRILDTDSETVA 118 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYR---DGIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+L+ RVRPA+ DGGDI F+G+ D +V + ++G+C GC S++ TLK G+ +L Sbjct: 119 MIKELLETRVRPAIMEDGGDIEFRGFDEEGDRLVKVKLKGSCRGCDSSTVTLKSGIERML 178 Query: 177 NHFVPEVKDIRTV 189 H+VPEVK + V Sbjct: 179 MHYVPEVKGVEQV 191 >gi|321470871|gb|EFX81846.1| hypothetical protein DAPPUDRAFT_49825 [Daphnia pulex] Length = 206 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 86/192 (44%), Positives = 123/192 (64%), Gaps = 11/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPG-QVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MF+QT+DTPNP +LKF+PG QVVL + F A+ SPLA +F I G+ SV+ G D Sbjct: 1 MFVQTQDTPNPNSLKFLPGVQVVLESETMDFPTLSSAQCSPLAKLLFRIEGVKSVFLGPD 60 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 FIT+ K ++ DW+ ++ V IM+ F SG P+++ G + E D+ Sbjct: 61 FITITKIDEETDWKTIKAEVFATIMDFFTSGLPVVNEGIN--------QPDNGNEEDNDT 112 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V IKE+LD+R+RP V DGGD+VFKG++DGIV+L ++G+C+ CPS+ TLK GV N+L Sbjct: 113 VLMIKELLDSRIRPTVQEDGGDLVFKGFKDGIVYLKLQGSCTSCPSSMVTLKNGVQNMLQ 172 Query: 178 HFVPEVKDIRTV 189 ++PEV + V Sbjct: 173 FYIPEVIAVEQV 184 >gi|328872467|gb|EGG20834.1| NIF system FeS cluster assembly domain-containing protein [Dictyostelium fasciculatum] Length = 313 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 75/190 (39%), Positives = 116/190 (61%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +FIQTE TPNP +LKF+PG V+ +G + F + K ++ISPLA+ IF + G+ V+FG F Sbjct: 104 IFIQTETTPNPDSLKFLPGVEVMEQGTVDFPDFKSSQISPLANAIFKLDGVNRVFFGPSF 163 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I+V K + +W L+P V G I+ + SG P++ + + D VV Sbjct: 164 ISVNKFTETEWSILKPQVYGAIINFYHSGQPLLLEKPSA-----ENNDTLILPEDDEVVA 218 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+++ R+RP + DGG+I + G++DGIV + ++G CS C S+ TLK G+ +L H+ Sbjct: 219 MIKELIETRIRPTLLDDGGNIQYLGFKDGIVLVKLQGTCSSCSSSQATLKGGIERMLMHW 278 Query: 180 VPEVKDIRTV 189 + EV+ I V Sbjct: 279 ISEVRGIMAV 288 >gi|330922033|ref|XP_003299669.1| hypothetical protein PTT_10711 [Pyrenophora teres f. teres 0-1] gi|311326592|gb|EFQ92266.1| hypothetical protein PTT_10711 [Pyrenophora teres f. teres 0-1] Length = 243 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 84/202 (41%), Positives = 120/202 (59%), Gaps = 13/202 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 MFIQTE TPN LKF P Q VL E + + N + SPLA+++ +I G+ Sbjct: 1 MFIQTEPTPNADALKFNPNQRVLPENISSPFLEYLNPRSTLAPPHPSPLAAQLMNIDGVT 60 Query: 53 SVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKL----DDMGS 107 SV+FG D+ITV KD W H++P V +I E+ SG PI++ + + S Sbjct: 61 SVFFGADYITVTKDSSTPWAHVKPEVFALINEYMTSGQPIVNTVAAKAGEQGQGGQENDS 120 Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASET 167 + E+D V+ IKE+L+ RVRPA+ DGGDI F+G+ DG V L +RGAC C S++ T Sbjct: 121 LAYDENDDEVIGMIKELLETRVRPAIQEDGGDIEFRGFNDGQVLLKLRGACRTCDSSTVT 180 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 LK G+ ++L H++ EVK ++ V Sbjct: 181 LKNGIESMLMHYIEEVKGVQQV 202 >gi|145605625|ref|XP_370496.2| NifU-related protein [Magnaporthe oryzae 70-15] gi|145013431|gb|EDJ98072.1| NifU-related protein [Magnaporthe oryzae 70-15] Length = 319 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 83/205 (40%), Positives = 120/205 (58%), Gaps = 16/205 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE----GAIHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE TPN LKF+P VL E I + N + SPLA+++ +I G+ Sbjct: 74 IFIQTEPTPNSDALKFLPNHRVLPEDISTPFIEYLNPRSTIAPPYPSPLAAQLMNIDGVQ 133 Query: 53 SVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIH-------NGGLGDMKLDD 104 SV++G DFITV K +W H+RP + +I E SG I++ +G G + Sbjct: 134 SVFYGADFITVTKASDANWAHIRPEIFSLITEAITSGQKIVNIVERTDASGEDGQETSGE 193 Query: 105 MGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSA 164 + S + E+DS VV IKE+L+ R+RPA+ DGGDI F+G+ DG V L +RGAC C S+ Sbjct: 194 VDSLSYNENDSEVVGMIKELLETRIRPAIQEDGGDIEFRGFEDGNVLLKLRGACRTCDSS 253 Query: 165 SETLKYGVANILNHFVPEVKDIRTV 189 + TLK G+ +L H++ EV+ + V Sbjct: 254 TVTLKNGIEGMLMHYIEEVQGVIQV 278 >gi|41351250|gb|AAH65889.1| Zgc:110319 protein [Danio rerio] Length = 255 Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats. Identities = 78/189 (41%), Positives = 114/189 (60%), Gaps = 10/189 (5%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I T+DTPNP +LKF+PG+ VL G F + AE SPLA +F I GI SV++G DFIT Sbjct: 53 ILTQDTPNPRSLKFLPGKPVLGTGTQDFPTSASAESSPLARDLFQISGIKSVFYGPDFIT 112 Query: 63 VGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 + K D +W ++ + +I + F G+ I + + E D +V Sbjct: 113 LTKTDDDVEWTDIKRHAIEVISKFFEGGEAITTGAAHAESSVT--------EDDDEIVSL 164 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+LD R+RP V DGGD++FKG+ DG V L + G+C+GCPS++ TLK G+ N++ ++ Sbjct: 165 IKELLDTRIRPTVQEDGGDVIFKGFEDGTVKLKLVGSCTGCPSSTVTLKNGIQNMMQFYI 224 Query: 181 PEVKDIRTV 189 PEV ++ V Sbjct: 225 PEVDNVEQV 233 >gi|324120927|ref|NP_001018093.2| NFU1 iron-sulfur cluster scaffold homolog [Danio rerio] gi|220678983|emb|CAX14770.1| novel protein similar to HIRA interacting protein 5 (hirip5, zgc:110319) [Danio rerio] Length = 256 Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats. Identities = 78/189 (41%), Positives = 114/189 (60%), Gaps = 10/189 (5%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I T+DTPNP +LKF+PG+ VL G F + AE SPLA +F I GI SV++G DFIT Sbjct: 54 ILTQDTPNPRSLKFLPGKPVLGTGTQDFPTSASAESSPLARDLFQISGIKSVFYGPDFIT 113 Query: 63 VGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 + K D +W ++ + +I + F G+ I + + E D +V Sbjct: 114 LTKTDDDVEWTDIKRHAIEVISKFFEGGEAITTGAAHAESSVT--------EDDDEIVSL 165 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IKE+LD R+RP V DGGD++FKG+ DG V L + G+C+GCPS++ TLK G+ N++ ++ Sbjct: 166 IKELLDTRIRPTVQEDGGDVIFKGFEDGTVKLKLVGSCTGCPSSTVTLKNGIQNMMQFYI 225 Query: 181 PEVKDIRTV 189 PEV ++ V Sbjct: 226 PEVDNVEQV 234 >gi|46107542|ref|XP_380830.1| hypothetical protein FG00654.1 [Gibberella zeae PH-1] Length = 304 Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats. Identities = 81/202 (40%), Positives = 120/202 (59%), Gaps = 13/202 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE----GAIHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE+TPNP LKF+P V+ E I + N + SPLA+++ +I G+ Sbjct: 74 IFIQTENTPNPDALKFLPNHRVVPEEFSTPFIEYLNPRATISPPHPSPLAAKLMNIDGVT 133 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD-- 109 SV++G DFITV K +W H+RP + +I E +G+ I+ + + D Sbjct: 134 SVFYGADFITVTKAADANWAHIRPEIFALITEAITAGEQIVTISERREGEAGAPVEEDSL 193 Query: 110 -FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASET 167 + E+DS VV IKE+L+ R+RPA+ DGGDI F+G+ D G V L +RGAC C S++ T Sbjct: 194 AYNENDSEVVGMIKELLETRIRPAIQEDGGDIDFRGFDDEGYVHLRLRGACRTCDSSTVT 253 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 LK G+ +L H++ EVK ++ V Sbjct: 254 LKNGIEGMLMHYIEEVKGVKQV 275 >gi|145344446|ref|XP_001416743.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576969|gb|ABO95036.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 206 Score = 247 bits (630), Expect = 7e-64, Method: Composition-based stats. Identities = 87/191 (45%), Positives = 122/191 (63%), Gaps = 9/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +L F PG+ V EG+ +FSNA+EA SPLA R+F+I G+ +V+FG DF Sbjct: 1 MFIQTQTTPNPMSLMFQPGREVYAEGSKNFSNAREAMASPLAKRLFAIEGVTNVFFGIDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + +WE ++P I + SG+ ++ L E D +V Sbjct: 61 VTVTKGEDAEWETVKPQTFEAITNFYASGETVMDEEKLAASGTA------IAEDDDEIVA 114 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ R+RPAVA DGGDIVFK + G+V + ++G+C GCPS+S TLK G+ N+L Sbjct: 115 MIKELLETRIRPAVAEDGGDIVFKAFDPESGLVTVQLQGSCDGCPSSSVTLKSGIENMLM 174 Query: 178 HFVPEVKDIRT 188 H+VPEVK + Sbjct: 175 HYVPEVKGVVQ 185 >gi|240279904|gb|EER43409.1| HIRA-interacting protein [Ajellomyces capsulatus H143] gi|325093032|gb|EGC46342.1| HIRA-interacting protein [Ajellomyces capsulatus H88] Length = 314 Score = 247 bits (630), Expect = 8e-64, Method: Composition-based stats. Identities = 78/199 (39%), Positives = 118/199 (59%), Gaps = 10/199 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEAEI----SPLASRIFSIPGIA 52 +FIQTE TPN LKF P VL E + + + + SPLA+++ ++ G++ Sbjct: 79 IFIQTETTPNADALKFNPNHPVLPENFPTSFVEYLSPRSTLTPPYPSPLAAKLLNVDGVS 138 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH-NGGLGDMKLDDMGSGDF 110 +V++G DFIT+ K +W H++P V +I E +G+PII+ + S + Sbjct: 139 AVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTTGEPIINVAEAGAGAGPAEEDSLSY 198 Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 E D VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C S++ TLK Sbjct: 199 NEDDDEVVGMIKELLETRIRPAIQEDGGDIEFRGFEDGIVSLKLRGACRTCDSSTVTLKN 258 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ ++L H++ EVK + V Sbjct: 259 GIESMLMHYIEEVKGVNHV 277 >gi|324510498|gb|ADY44390.1| NFU1 iron-sulfur cluster scaffold [Ascaris suum] Length = 213 Score = 246 bits (629), Expect = 9e-64, Method: Composition-based stats. Identities = 84/193 (43%), Positives = 126/193 (65%), Gaps = 8/193 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG--AIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 MFIQ ++TPNP TLKF+PG+ VL G + F++ A+ SPLA ++F + G+ S++FG Sbjct: 1 MFIQVQETPNPLTLKFLPGEPVLGPGRGTMDFTSVSAAKRSPLALQLFRVDGVKSIFFGE 60 Query: 59 DFITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 DFITV K ++ DW ++P + IM+ +G I+++G + D +D D Sbjct: 61 DFITVTKADEETDWAVMKPEIFATIMDFLQTGKAIVNDGEVPDGPMD----TMIHPEDDD 116 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V IKE+L++RV+P V DGGDI++KG+ DGIV L ++G+C+GCPS+ TLK G+ N+L Sbjct: 117 TVAMIKELLESRVKPMVQEDGGDIIYKGFHDGIVHLKLKGSCTGCPSSLVTLKSGIKNML 176 Query: 177 NHFVPEVKDIRTV 189 +VPEV D+ V Sbjct: 177 QFYVPEVVDVIEV 189 >gi|332028326|gb|EGI68373.1| NFU1 iron-sulfur cluster scaffold-like protein, mitochondrial [Acromyrmex echinatior] Length = 211 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 86/192 (44%), Positives = 117/192 (60%), Gaps = 12/192 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKFIPG VL EG F +AK+A SPLA +F I G+ +++FG D Sbjct: 1 MFIQTQDTPNPNSLKFIPGVSVLGEGCTKDFPSAKDAYCSPLAKMLFRIEGVKAIFFGPD 60 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 FITV K + +W+ L+P + IM+ F SG P++ D V Sbjct: 61 FITVTKVDEDVEWKLLKPEIFATIMDFFASGLPVMDEAS------QPAADTQINAEDDEV 114 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 VQ IKE+LD R+RP V DGGDI G+ +GIV L M+G+C+ CPS+ TL+ GV N++ Sbjct: 115 VQMIKELLDTRIRPTVQEDGGDI---GFEEGIVKLKMQGSCTNCPSSVVTLRNGVQNMMQ 171 Query: 178 HFVPEVKDIRTV 189 ++PEV + V Sbjct: 172 FYIPEVLGVIQV 183 >gi|85709112|ref|ZP_01040178.1| possible NifU-like domain protein [Erythrobacter sp. NAP1] gi|85690646|gb|EAQ30649.1| possible NifU-like domain protein [Erythrobacter sp. NAP1] Length = 193 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 81/192 (42%), Positives = 130/192 (67%), Gaps = 4/192 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFI+TE TPNP++LKF+PG+ V+ G F++ + AE SPLA IF + +V++G+DF Sbjct: 1 MFIETETTPNPSSLKFLPGRAVMPSGTREFASPEAAEASPLAQAIFDTGEVVNVFYGWDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG---DFIESDSA 116 +TV DW L+P V ++++HF+S P+ G + + + + E D+ Sbjct: 61 VTVTAAPGVDWSALKPQVHAILLDHFVSEAPLFVGGTADGISVPPEEAEMVVEDREEDAE 120 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++ I E+L+ RVRPAVA DGGDI ++G+ DG+V+L+++GAC+GCPS++ TLK+G+ ++L Sbjct: 121 IIASINELLETRVRPAVAGDGGDIAYRGFSDGVVYLTLQGACAGCPSSTATLKHGIESLL 180 Query: 177 NHFVPEVKDIRT 188 H+VPEV ++R Sbjct: 181 KHYVPEVVEVRA 192 >gi|312070286|ref|XP_003138076.1| hypothetical protein LOAG_02490 [Loa loa] gi|307766755|gb|EFO25989.1| hypothetical protein LOAG_02490 [Loa loa] Length = 220 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 85/193 (44%), Positives = 126/193 (65%), Gaps = 8/193 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG--AIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 MFIQ +TPNPATLKFIPG++++ +G + F N A+ SPLA +F I G+ SV+FG Sbjct: 1 MFIQVHETPNPATLKFIPGRMIMGKGRGTLDFGNFLSAKRSPLAMELFRINGVKSVFFGE 60 Query: 59 DFITVGKDQY--DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 D++T+ K DW L+P + ++M++ S PII G + D + DS Sbjct: 61 DYVTITKQNEVDDWALLKPEIFAVLMDYLQSEKPIISEGEMPKGPED----TEIHPEDSD 116 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V IKE+L+ R++P V DGGD+++KG+ DG+V L M+G+C+GCPS+S TL++G+ N+L Sbjct: 117 TVAMIKELLECRIKPMVQEDGGDVIYKGFHDGVVHLKMQGSCTGCPSSSVTLQFGIKNML 176 Query: 177 NHFVPEVKDIRTV 189 +VPEVKD+ V Sbjct: 177 QFYVPEVKDVLEV 189 >gi|320170179|gb|EFW47078.1| TO42 [Capsaspora owczarzaki ATCC 30864] Length = 280 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 78/190 (41%), Positives = 115/190 (60%), Gaps = 10/190 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKF+PG V+ G F++++ A SPLA ++ I G+ V+F F Sbjct: 65 MFIQTQDTPNPNSLKFMPGVTVVDAGTYDFADSRAAATSPLARQLLRIQGVNRVFFAQKF 124 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I++ K D+ +W L+P + IM+ F SG P++ + + V Sbjct: 125 ISINKADEAEWPVLKPEIYATIMDFFASGLPVVEAPKTTEEAATEENET---------VS 175 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+LD+R+RP V DGGDI FK + +G+V L + G+CS CPS+ TL GV+N+L H+ Sbjct: 176 MIKELLDSRIRPMVQEDGGDIEFKSFENGVVKLKLIGSCSTCPSSKATLYDGVSNMLMHY 235 Query: 180 VPEVKDIRTV 189 VPE++ I V Sbjct: 236 VPEIEKIEQV 245 >gi|225563079|gb|EEH11358.1| HIRA-interacting protein [Ajellomyces capsulatus G186AR] Length = 314 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 78/199 (39%), Positives = 118/199 (59%), Gaps = 10/199 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEAEI----SPLASRIFSIPGIA 52 +FIQTE TPN LKF P VL E + + + + SPLA+++ ++ G++ Sbjct: 79 IFIQTETTPNADALKFNPNHPVLPENFPTSFVEYLSPRSTLTPPYPSPLAAKLLNVDGVS 138 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH-NGGLGDMKLDDMGSGDF 110 +V++G DFIT+ K +W H++P V +I E +G+PII+ + S + Sbjct: 139 AVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTTGEPIINVAEAGAGAGPAEEDSLSY 198 Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 E D VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C S++ TLK Sbjct: 199 NEDDDEVVGMIKELLETRIRPAIQEDGGDIEFRGFEDGIVSLKLRGACRTCDSSTVTLKN 258 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ ++L H++ EVK + V Sbjct: 259 GIESMLMHYIEEVKGVNHV 277 >gi|162147187|ref|YP_001601648.1| nitrogen fixation protein [Gluconacetobacter diazotrophicus PAl 5] gi|209544240|ref|YP_002276469.1| Scaffold protein Nfu/NifU [Gluconacetobacter diazotrophicus PAl 5] gi|161785764|emb|CAP55335.1| putative nitrogen fixation protein [Gluconacetobacter diazotrophicus PAl 5] gi|209531917|gb|ACI51854.1| Scaffold protein Nfu/NifU [Gluconacetobacter diazotrophicus PAl 5] Length = 187 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 94/192 (48%), Positives = 128/192 (66%), Gaps = 10/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKE-AEISPLASRIFSIPGIASVYFGY 58 MFI+TEDTPNPATLKF+PG+ ++ F + A S LA +F PG+A V+ G Sbjct: 1 MFIETEDTPNPATLKFLPGRTIVPGRATADFVSPDAVAGRSKLADALFGQPGVARVFLGG 60 Query: 59 DFITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 DF+ V KD+ DW L+P +L ++++ F+SG P I + + +L D + Sbjct: 61 DFVAVTKDEATDWSVLKPQLLSVLVDFFVSGMPAIEDDAAVEEEL-------IAPEDEEI 113 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V++IKE+LD RVRPAVA DGGDIVF+GYRDG+V L+M+GACSGCPS+ TLK+GV N+L Sbjct: 114 VRQIKELLDTRVRPAVAGDGGDIVFRGYRDGVVRLTMQGACSGCPSSRATLKHGVENMLR 173 Query: 178 HFVPEVKDIRTV 189 H+VPEV + V Sbjct: 174 HYVPEVVSVEQV 185 >gi|116199405|ref|XP_001225514.1| hypothetical protein CHGG_07858 [Chaetomium globosum CBS 148.51] gi|88179137|gb|EAQ86605.1| hypothetical protein CHGG_07858 [Chaetomium globosum CBS 148.51] Length = 337 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 82/211 (38%), Positives = 120/211 (56%), Gaps = 22/211 (10%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG----AIHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE TPN LKF+P +L G I + N + SPLA+++ +I G+ Sbjct: 86 IFIQTESTPNADALKFLPNHQILPAGLTTPFIEYLNPRATIAPPHPSPLAAQLMNIDGVT 145 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGG-------------LG 98 +V++G DFITV K +W H+RP V +I E SG PI++ G Sbjct: 146 AVFYGADFITVTKAADANWAHVRPEVFALITEAITSGQPIVNVAERKEGGGGVGGAAGEG 205 Query: 99 DMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGAC 158 + ++ S + E+DS VV IKE+L+ RVRPA+ DGGDI F+G+ +G V L +RGAC Sbjct: 206 EGAAEEKDSLAYDENDSEVVGMIKELLETRVRPAIQEDGGDIEFRGFENGYVMLKLRGAC 265 Query: 159 SGCPSASETLKYGVANILNHFVPEVKDIRTV 189 C S++ TLK G+ +L H++ EV+ + V Sbjct: 266 RTCDSSTVTLKNGIEGMLMHYIEEVQGVHQV 296 >gi|328773127|gb|EGF83164.1| hypothetical protein BATDEDRAFT_9276 [Batrachochytrium dendrobatidis JAM81] Length = 225 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 85/193 (44%), Positives = 112/193 (58%), Gaps = 10/193 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAI---HFSNAKEAEISPLASRIFSIPGIASVYFG 57 MFIQTE TPN +LKF PG++VL EG F +A+EA SPLAS +F I G+ SV FG Sbjct: 9 MFIQTESTPNLDSLKFKPGKLVLPEGTTSTREFISAREAMQSPLASTLFRIDGVKSVLFG 68 Query: 58 YDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 D ITV K W ++P + G IM+ + SG P+ G + DS Sbjct: 69 KDVITVNKSPDVAWSIIKPDIFGAIMDFYSSGVPLFKVAFEG------PTDTMILPEDSE 122 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V IKE+LD R+RP + DGGDI + G+ +G V L +RGAC C S+ TLK G+ N+L Sbjct: 123 TVAMIKELLDTRIRPTIQEDGGDIEYMGFVNGAVRLKLRGACRTCDSSVVTLKNGIENML 182 Query: 177 NHFVPEVKDIRTV 189 H++PEV + V Sbjct: 183 MHYIPEVTAVEQV 195 >gi|325187609|emb|CCA22145.1| ironsulfur cluster scaffold protein Nfulike protein putative [Albugo laibachii Nc14] Length = 287 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 82/196 (41%), Positives = 118/196 (60%), Gaps = 14/196 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE----GAIHFSNAKEAEISPLASRIFSIPGIASVYF 56 MF+QTE TPNP +LKF+PG+ VL + G A E SPLA ++F I GI+ V+F Sbjct: 71 MFVQTEPTPNPNSLKFLPGKPVLDDRFTTGVDFVPGAAEIRQSPLAKKLFQIDGISRVFF 130 Query: 57 GYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDS 115 G DFI+V K D W+ LR + I++ + +G+ + + + + + D Sbjct: 131 GKDFISVTKADDMHWDALRAEIFATIIDFYGTGEATMSDEPI-------VTDTTILPEDD 183 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVA 173 VV IKE+L+ R+RP+V DGGDI +K + GIV L + GAC+GCPS+S TLK GV Sbjct: 184 EVVAMIKELLEQRIRPSVQDDGGDIFYKDFDVERGIVKLQLAGACAGCPSSSVTLKSGVE 243 Query: 174 NILNHFVPEVKDIRTV 189 N+L +++PEV+ I V Sbjct: 244 NMLKYYIPEVQGIEEV 259 >gi|66808847|ref|XP_638146.1| NIF system FeS cluster assembly domain-containing protein [Dictyostelium discoideum AX4] gi|60466582|gb|EAL64634.1| NIF system FeS cluster assembly domain-containing protein [Dictyostelium discoideum AX4] Length = 314 Score = 245 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 81/191 (42%), Positives = 122/191 (63%), Gaps = 6/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAI-HFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQTE TPNP +LKFIPG VL EG I FS+ K ++ SPLA+ +F + G+ V+F D Sbjct: 98 IFIQTETTPNPDSLKFIPGVQVLEEGQIIDFSDFKTSQQSPLANNLFKLDGVNRVFFSSD 157 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FI+V K +++W L+P + G I++ + SG PI+ + LG++ D + D VV Sbjct: 158 FISVNKYPEHEWSILKPQIYGTIIDFYHSGLPILSDPSLGNINAD----TMILPEDDEVV 213 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+++ R+RP V DGG+I + G++DGIV + ++G CS C S+ TLK G+ +L H Sbjct: 214 AMIKELIETRIRPTVLEDGGNIKYMGFKDGIVMVQLQGTCSSCSSSQATLKGGIERMLMH 273 Query: 179 FVPEVKDIRTV 189 ++ EV + V Sbjct: 274 WISEVTGVIAV 284 >gi|254420655|ref|ZP_05034379.1| Scaffold protein Nfu/NifU N terminal [Brevundimonas sp. BAL3] gi|196186832|gb|EDX81808.1| Scaffold protein Nfu/NifU N terminal [Brevundimonas sp. BAL3] Length = 185 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 84/192 (43%), Positives = 120/192 (62%), Gaps = 13/192 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP LKF+PG+ V + + A SPLA +F + G+ V+FG D+ Sbjct: 1 MFIQTEPTPNPNVLKFLPGREVSPLAVLDYRTIDAATASPLAEALFELEGVDGVFFGADY 60 Query: 61 ITVGKDQ--YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ++V + + DW ++ P+LG+IM+HF+SG P+ G + E DS +V Sbjct: 61 VSVTRQERGPDWSEMKAPILGVIMDHFVSGRPLTVAGSETETHA---------EDDSEIV 111 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 IK +LD+R+RPAVA+DGGDI+F + + G++ L MRGACSGCPS+S TLK GV ++ Sbjct: 112 AEIKALLDSRIRPAVAQDGGDILFDAFDEATGVLSLRMRGACSGCPSSSATLKAGVEQMM 171 Query: 177 NHFVPEVKDIRT 188 H+VPEV + Sbjct: 172 RHYVPEVTRVEQ 183 >gi|303322791|ref|XP_003071387.1| NifU-like domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240111089|gb|EER29242.1| NifU-like domain containing protein [Coccidioides posadasii C735 delta SOWgp] Length = 325 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 76/203 (37%), Positives = 119/203 (58%), Gaps = 14/203 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE TPN LKFIP VL E + + + + SPLA+++ ++ G++ Sbjct: 81 IFIQTEVTPNADALKFIPNYPVLPENFPAPFLEYLSPRSTLAAPHPSPLAAKLLNVDGVS 140 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH-----NGGLGDMKLDDMG 106 SV++G DFIT+ K +W H++P V +I E SG+ +++ G + Sbjct: 141 SVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTSGEQLVNTVAVAEGAHAGQEGSGEE 200 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + ++ E D VV I E+L+ R+RPA+ DGGDI F+G++DG V L +RGAC C S++ Sbjct: 201 AVEYNEEDEEVVGMINELLETRIRPAIQEDGGDIEFRGFKDGNVMLKLRGACRTCDSSTV 260 Query: 167 TLKYGVANILNHFVPEVKDIRTV 189 TLK G+ ++L H++ EVK + V Sbjct: 261 TLKNGIESMLMHYIEEVKSVTQV 283 >gi|85374519|ref|YP_458581.1| hypothetical protein ELI_08460 [Erythrobacter litoralis HTCC2594] gi|84787602|gb|ABC63784.1| hypothetical protein ELI_08460 [Erythrobacter litoralis HTCC2594] Length = 192 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 128/191 (67%), Gaps = 3/191 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFI+TE TPNP+TLKF+PGQ V+ G F++ +EAE SPLA IF + +V+FG DF Sbjct: 1 MFIETETTPNPSTLKFLPGQQVMPGGTREFTSPEEAEASPLAQAIFDTGEVTNVFFGSDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE--SDSAV 117 ++V DW L+ V+ ++++HF+S P+ G + + E D+ + Sbjct: 61 VSVSAAPGADWSSLKGMVVSILLDHFVSQAPLFVGGDASGISVPAEDDLLVEENADDADI 120 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +I E+L+ RVRPAVA DGGDI ++G++DG+V+L+++GACSGCPS++ TLK G+ +L Sbjct: 121 VAQINELLETRVRPAVAGDGGDIAYRGFKDGVVYLTLQGACSGCPSSTATLKQGIEGLLK 180 Query: 178 HFVPEVKDIRT 188 H+VPEV ++R Sbjct: 181 HYVPEVVEVRA 191 >gi|310796741|gb|EFQ32202.1| hypothetical protein GLRG_07346 [Glomerella graminicola M1.001] Length = 316 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 81/207 (39%), Positives = 120/207 (57%), Gaps = 18/207 (8%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE TPN +KF+P +L E I + N + SPLA+++ +I G+ Sbjct: 80 IFIQTEQTPNADAIKFLPNHRILPENISTPFIEYLNPRSTIAPPYPSPLAAQLMNIDGVT 139 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGD--------MKLD 103 SV++G DFITV K +W H+RP V +I E SG I++ + + Sbjct: 140 SVFYGADFITVSKAADANWAHIRPEVFALITEAITSGQSIVNVAEKKEGGVAGEEQQQHG 199 Query: 104 DMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCP 162 + S + E+DS VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C Sbjct: 200 EEDSLAYDENDSEVVGMIKELLETRIRPAIQEDGGDIEFRGFTDDGIVLLKLRGACRTCD 259 Query: 163 SASETLKYGVANILNHFVPEVKDIRTV 189 S++ TLK G+ +L H++ EVK ++ + Sbjct: 260 SSTVTLKNGIEGMLMHYIEEVKGVQQI 286 >gi|281208054|gb|EFA82232.1| NIF system FeS cluster assembly domain-containing protein [Polysphondylium pallidum PN500] Length = 307 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 75/191 (39%), Positives = 118/191 (61%), Gaps = 7/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQTE+TPNP +LKF+PG V+ G I F + K ++ISPLA+ IF + G+ V++G D Sbjct: 96 LFIQTENTPNPDSLKFVPGIEVMPPGKTIDFPDFKSSQISPLANAIFKLDGVNRVFYGPD 155 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FI+V K +++W L+P V G I++ + S P++ ++ + D V Sbjct: 156 FISVNKFPEHEWAILKPQVFGAIIDFYHSDKPLLSE-----TPTNENSDTLILPEDDETV 210 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+++ RVRP + DGG+I + G++DGIV + ++G CS C S+ TLK G+ +L H Sbjct: 211 AMIKELIETRVRPTLLDDGGNIQYLGFKDGIVLVKLQGTCSSCSSSQATLKGGIERMLMH 270 Query: 179 FVPEVKDIRTV 189 ++ EV+ I V Sbjct: 271 WISEVRGIMAV 281 >gi|119189821|ref|XP_001245517.1| hypothetical protein CIMG_04958 [Coccidioides immitis RS] Length = 325 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 76/203 (37%), Positives = 119/203 (58%), Gaps = 14/203 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE TPN LKFIP VL E + + + + SPLA+++ ++ G++ Sbjct: 81 IFIQTEVTPNADALKFIPNYPVLPENFPAPFLEYLSPRSTLAAPHPSPLAAKLLNVDGVS 140 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH-----NGGLGDMKLDDMG 106 SV++G DFIT+ K +W H++P V +I E SG+ +++ G + Sbjct: 141 SVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTSGEQLVNTVAVAEGAQAGQEGSGEE 200 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + ++ E D VV I E+L+ R+RPA+ DGGDI F+G++DG V L +RGAC C S++ Sbjct: 201 AVEYNEEDEEVVGMINELLETRIRPAIQEDGGDIEFRGFKDGNVMLKLRGACRTCDSSTV 260 Query: 167 TLKYGVANILNHFVPEVKDIRTV 189 TLK G+ ++L H++ EVK + V Sbjct: 261 TLKNGIESMLMHYIEEVKSVTQV 283 >gi|320032859|gb|EFW14809.1| NifU family protein [Coccidioides posadasii str. Silveira] Length = 325 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 76/203 (37%), Positives = 119/203 (58%), Gaps = 14/203 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE TPN LKFIP VL E + + + + SPLA+++ ++ G++ Sbjct: 81 IFIQTEVTPNADALKFIPNYPVLPENFPAPFLEYLSPRSTLAAPHPSPLAAKLLNVDGVS 140 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH-----NGGLGDMKLDDMG 106 SV++G DFIT+ K +W H++P V +I E SG+ +++ G + Sbjct: 141 SVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTSGEQLVNTVAVAEGAHAGQEGSGEE 200 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + ++ E D VV I E+L+ R+RPA+ DGGDI F+G++DG V L +RGAC C S++ Sbjct: 201 AVEYNEEDEEVVGMINELLETRIRPAIQEDGGDIEFRGFKDGNVMLKLRGACRTCDSSTV 260 Query: 167 TLKYGVANILNHFVPEVKDIRTV 189 TLK G+ ++L H++ EVK + V Sbjct: 261 TLKNGIESMLMHYIEEVKSVTQV 283 >gi|302695957|ref|XP_003037657.1| hypothetical protein SCHCODRAFT_48637 [Schizophyllum commune H4-8] gi|300111354|gb|EFJ02755.1| hypothetical protein SCHCODRAFT_48637 [Schizophyllum commune H4-8] Length = 220 Score = 243 bits (622), Expect = 6e-63, Method: Composition-based stats. Identities = 78/193 (40%), Positives = 121/193 (62%), Gaps = 5/193 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE-GAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQTE TPN ++KFIPG V+ E G F + + A SPLA R+ I G+ +V++G D Sbjct: 1 MFIQTESTPNEDSIKFIPGVPVMGESGTAEFLDTRSALTSPLAVRLMGIEGVRAVFYGPD 60 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+TV K ++ W ++P + ++ME F S + + D + +++DS VV Sbjct: 61 FVTVSKSSEHPWSVIKPEIYSVLMEFFTSNNQPLFRSK-EDRENAGPQDTRILDTDSDVV 119 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+L+ RVRPA+ DGGDI ++G+ + G+V + ++G+C GC S++ TLK G+ N+L Sbjct: 120 AMIKELLETRVRPAIMEDGGDIEYRGFDEESGVVQVKLKGSCRGCSSSTVTLKTGIENML 179 Query: 177 NHFVPEVKDIRTV 189 H++PEVK + V Sbjct: 180 MHYIPEVKGVEQV 192 >gi|330991171|ref|ZP_08315124.1| NFU1 iron-sulfur cluster scaffold-like protein [Gluconacetobacter sp. SXCC-1] gi|329761757|gb|EGG78248.1| NFU1 iron-sulfur cluster scaffold-like protein [Gluconacetobacter sp. SXCC-1] Length = 187 Score = 243 bits (622), Expect = 7e-63, Method: Composition-based stats. Identities = 92/192 (47%), Positives = 126/192 (65%), Gaps = 10/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKE-AEISPLASRIFSIPGIASVYFGY 58 MFI+TEDTPNPATLKF+PG+ ++ G F + A S LA +F + G+A V+FG Sbjct: 1 MFIETEDTPNPATLKFLPGREIMANGATADFISPDSVAGRSRLAELLFDLDGVARVFFGA 60 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 DF+ V + D +WE LRP VL ++ ++ +G ++ + + D + Sbjct: 61 DFVAVTRSDSVEWEGLRPQVLAVLADYLATGQAVVESDAQ-------VVEDLIAPGDEEI 113 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 VQ+IKE+LD RVRPAVA DGGDIVF+GYRDG+V L+M+GACSGCPS+ TLK+GV N+L Sbjct: 114 VQQIKELLDTRVRPAVAGDGGDIVFRGYRDGVVRLTMQGACSGCPSSRATLKHGVENMLR 173 Query: 178 HFVPEVKDIRTV 189 H+VPEV + V Sbjct: 174 HYVPEVVSVEQV 185 >gi|329891163|ref|ZP_08269506.1| scaffold protein Nfu/NifU family protein [Brevundimonas diminuta ATCC 11568] gi|328846464|gb|EGF96028.1| scaffold protein Nfu/NifU family protein [Brevundimonas diminuta ATCC 11568] Length = 185 Score = 243 bits (622), Expect = 7e-63, Method: Composition-based stats. Identities = 82/193 (42%), Positives = 123/193 (63%), Gaps = 13/193 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP LKF+PG+ V V+ + + EA SPLA +F + G+ V+FG D+ Sbjct: 1 MFIQTEATPNPNALKFLPGRDVAVQDVLEYRTIDEAAASPLAEALFELEGVEGVFFGADY 60 Query: 61 ITVGKDQY--DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +++ + + DW ++ P+L +IM+HF+SG P++ G + D+ +V Sbjct: 61 VSITRAAHGPDWTEMKAPILSVIMDHFVSGAPLVREGETA---------TEDAGEDTEIV 111 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 IK +LD+R+RPAVA+DGGDI+F + + G++ L MRGAC+GCPS+S TLK GV ++ Sbjct: 112 AEIKSLLDSRIRPAVAQDGGDILFDHFDEETGVLRLRMRGACAGCPSSSATLKAGVEQMM 171 Query: 177 NHFVPEVKDIRTV 189 H+VPEV + V Sbjct: 172 RHYVPEVTSVEQV 184 >gi|154281411|ref|XP_001541518.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150411697|gb|EDN07085.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 279 Score = 243 bits (622), Expect = 7e-63, Method: Composition-based stats. Identities = 78/199 (39%), Positives = 118/199 (59%), Gaps = 10/199 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEAEI----SPLASRIFSIPGIA 52 +FIQTE TPN LKF P VL E + + + + SPLA+++ ++ G++ Sbjct: 44 IFIQTETTPNADALKFNPNHPVLPENFPTSFVEYLSPRSTLTPPYPSPLAAKLLNVDGVS 103 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH-NGGLGDMKLDDMGSGDF 110 +V++G DFIT+ K +W H++P V +I E +G+PII+ + S + Sbjct: 104 AVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTTGEPIINVAEAGAGAGPAEEDSLSY 163 Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 E D VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C S++ TLK Sbjct: 164 NEDDDEVVGMIKELLETRIRPAIQEDGGDIEFRGFEDGIVSLKLRGACRTCDSSTVTLKN 223 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ ++L H++ EVK + V Sbjct: 224 GIESMLMHYIEEVKGVNHV 242 >gi|326403969|ref|YP_004284051.1| hypothetical protein ACMV_18220 [Acidiphilium multivorum AIU301] gi|325050831|dbj|BAJ81169.1| hypothetical protein ACMV_18220 [Acidiphilium multivorum AIU301] Length = 185 Score = 243 bits (621), Expect = 8e-63, Method: Composition-based stats. Identities = 98/190 (51%), Positives = 133/190 (70%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFI+T+ TPNPATLKF+PG+ VL +G+ F +A A SPLA +F++PG+ V+ G DF Sbjct: 1 MFIETDVTPNPATLKFLPGREVLGQGSADFDSADAAAASPLAEALFALPGVVRVFLGADF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ++V +D+ +W L+P VLG IMEH++SG P++ D +D + Sbjct: 61 VSVTRDEGTEWTSLKPQVLGAIMEHYLSGRPVMAGA-------QAEVDEDVDPADREIAD 113 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA DGGDIVF+G+RDGIV L M+GACSGCPS++ TLK G+ N+L H+ Sbjct: 114 QIKELLDMRVRPAVAGDGGDIVFRGFRDGIVSLHMQGACSGCPSSTATLKMGIENLLKHY 173 Query: 180 VPEVKDIRTV 189 VPEVK +R V Sbjct: 174 VPEVKSVRQV 183 >gi|225629714|ref|ZP_03787679.1| NifU domain protein [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591431|gb|EEH12506.1| NifU domain protein [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 194 Score = 243 bits (621), Expect = 8e-63, Method: Composition-based stats. Identities = 92/189 (48%), Positives = 130/189 (68%), Gaps = 4/189 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ E+TPNP TLKF+PG +L EG FSNA E + S LA+ +F I + V+FG+D Sbjct: 5 MFIQIEETPNPNTLKFLPGFAILNEGETADFSNADEIKNSKLAANLFQIEHVVRVFFGHD 64 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FI+V K +W+ L+ +L IM+HF SG + G+ D + D F E+D +V Sbjct: 65 FISVTKLGGINWDTLKVEILTTIMDHFTSGGKALDKEGVNDNNISD--EEFFDENDIEIV 122 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 RIKE++++ ++PAVA+DGGDI F+GY+DGIV++ ++GACSGCPSA+ TLK GV N+L++ Sbjct: 123 NRIKELMESYIKPAVAQDGGDIKFRGYKDGIVYVELQGACSGCPSAAITLKQGVQNMLSY 182 Query: 179 FVPEVKDIR 187 +PEV I Sbjct: 183 HIPEVAGIE 191 >gi|212540196|ref|XP_002150253.1| NifU-related protein [Penicillium marneffei ATCC 18224] gi|210067552|gb|EEA21644.1| NifU-related protein [Penicillium marneffei ATCC 18224] Length = 285 Score = 243 bits (621), Expect = 8e-63, Method: Composition-based stats. Identities = 80/194 (41%), Positives = 115/194 (59%), Gaps = 14/194 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE TPNP LKF+P VL E + + + + SPLA+++ +I GI+ Sbjct: 81 IFIQTESTPNPDALKFLPNNRVLPENFSTPFLEYLSPRSTLAPPHPSPLAAKLLNIEGIS 140 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD-- 109 SV++G DFITV K +W H++P V +I E SG+PI++ D G Sbjct: 141 SVFYGPDFITVTKSSDVNWAHVKPEVFSLITEVVTSGEPIVNTVEHTSGAQDAQEGGGED 200 Query: 110 ---FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + E D VV IKE+L+ R+RPA+ DGGDI F+G+ +GIV L +RGAC C S++ Sbjct: 201 TLGYNEEDDEVVGMIKELLETRIRPAIQEDGGDIEFRGFENGIVLLKLRGACRTCDSSTV 260 Query: 167 TLKYGVANILNHFV 180 TLK G+ ++L H+V Sbjct: 261 TLKNGIESMLMHYV 274 >gi|148260770|ref|YP_001234897.1| NifU domain-containing protein [Acidiphilium cryptum JF-5] gi|146402451|gb|ABQ30978.1| nitrogen-fixing NifU domain protein [Acidiphilium cryptum JF-5] Length = 185 Score = 243 bits (621), Expect = 8e-63, Method: Composition-based stats. Identities = 98/190 (51%), Positives = 132/190 (69%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFI+T+ TPNPATLKF+PG+ VL +G+ F +A A SPLA +F++PG+ V+ G DF Sbjct: 1 MFIETDVTPNPATLKFLPGREVLGQGSADFDSADAAAASPLAEALFALPGVVRVFLGADF 60 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ++V +D +W L+P VLG IMEH++SG P++ D +D + Sbjct: 61 VSVTRDDGTEWTSLKPQVLGAIMEHYLSGRPVMAGA-------QAEVDEDVDPADREIAD 113 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE+LD RVRPAVA DGGDIVF+G+RDGIV L M+GACSGCPS++ TLK G+ N+L H+ Sbjct: 114 QIKELLDMRVRPAVAGDGGDIVFRGFRDGIVSLHMQGACSGCPSSTATLKMGIENLLKHY 173 Query: 180 VPEVKDIRTV 189 VPEVK +R V Sbjct: 174 VPEVKSVRQV 183 >gi|326386713|ref|ZP_08208334.1| nitrogen-fixing NifU-like protein [Novosphingobium nitrogenifigens DSM 19370] gi|326208766|gb|EGD59562.1| nitrogen-fixing NifU-like protein [Novosphingobium nitrogenifigens DSM 19370] Length = 191 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 84/190 (44%), Positives = 130/190 (68%), Gaps = 2/190 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFI+TE TPNPATLKF+PG++V+ +G F++A+EA ISPLA +FS+ + V FG +F Sbjct: 1 MFIETETTPNPATLKFLPGEIVMADGTREFTSAEEAAISPLADALFSLGDVTGVLFGREF 60 Query: 61 ITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLG-DMKLDDMGSGDFIESDSAVV 118 ++V W +P VL ++++HF+S P+ G + ++ +D+ +V Sbjct: 61 VSVTIAPGSAWSDTKPQVLAVLLDHFVSQAPLFVAASAGFSVPAEEDEDFGDDPADADIV 120 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +I ++++ R+RPAVA DGGDI ++G+RDG+V+L M+GACSGCPS+S TLK G+ +L H Sbjct: 121 DQILDLIETRIRPAVANDGGDISYRGFRDGVVYLRMQGACSGCPSSSATLKNGIEALLKH 180 Query: 179 FVPEVKDIRT 188 +VPEV ++R Sbjct: 181 YVPEVNEVRA 190 >gi|242011992|ref|XP_002426727.1| HIRA-interacting protein, putative [Pediculus humanus corporis] gi|212510898|gb|EEB13989.1| HIRA-interacting protein, putative [Pediculus humanus corporis] Length = 216 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 83/192 (43%), Positives = 113/192 (58%), Gaps = 20/192 (10%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT+DTPNP +LKFIPG VL G F NA A SPL +F I G+ SV+FG D Sbjct: 14 MFIQTQDTPNPNSLKFIPGVKVLENGKTKDFPNAASALCSPLGKSLFRINGVKSVFFGPD 73 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 FIT+ K + W+ + P + IM+ F SG PI+ ES S Sbjct: 74 FITITKQDEDVSWKLINPEIFATIMDFFSSGLPILTE----------------NESKSDF 117 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V+ E+L+ R+RP V DGGD+VFKG+ +GIV L + G+C+ CPS+ TLK G+ N+L Sbjct: 118 VKE-NELLETRIRPTVQEDGGDVVFKGFENGIVKLKLLGSCTTCPSSIVTLKNGIQNMLQ 176 Query: 178 HFVPEVKDIRTV 189 ++PEV ++ + Sbjct: 177 FYIPEVLEVEQI 188 >gi|190571129|ref|YP_001975487.1| NifU domain protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018533|ref|ZP_03334341.1| NifU domain protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357401|emb|CAQ54835.1| NifU domain protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995484|gb|EEB56124.1| NifU domain protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 190 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 92/189 (48%), Positives = 131/189 (69%), Gaps = 4/189 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ E+TPNP TLKF+PG +L EG FSNA E + S LA +F I + V+FG+D Sbjct: 1 MFIQIEETPNPNTLKFLPGFEILSEGETADFSNADEIKNSKLAVNLFQIEHVVRVFFGHD 60 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FI+V K D+ +W+ ++ +L IM+HF SG G+ D K+ + F E+D +V Sbjct: 61 FISVTKSDRMNWDIVKVEILTTIMDHFTSGGKAFDKEGVSDNKM--LEEEFFNENDIEIV 118 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 RIKE++++ ++PAVA+DGGDI F+GY+DGIV++ ++GACSGCPSA+ TLK GV N+L++ Sbjct: 119 NRIKELMESYIKPAVAQDGGDIKFRGYKDGIVYVELQGACSGCPSAAITLKQGVQNMLSY 178 Query: 179 FVPEVKDIR 187 +PEV I Sbjct: 179 HIPEVSGIE 187 >gi|170593029|ref|XP_001901267.1| r10h10-like protein TO42 [Brugia malayi] gi|158591334|gb|EDP29947.1| r10h10-like protein TO42, putative [Brugia malayi] Length = 220 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 84/193 (43%), Positives = 127/193 (65%), Gaps = 8/193 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG--AIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 MFIQ ++TPNPATLKFIPG++++ +G + F N A+ SPLA +F I GI SV+FG Sbjct: 1 MFIQVQETPNPATLKFIPGKMIMGKGKGTLDFGNFMSAKKSPLAMELFRINGIKSVFFGE 60 Query: 59 DFITVGKDQY--DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 D++T+ K + DW L+P + ++M++ S PI++ + D + DS Sbjct: 61 DYVTITKQKEIDDWTLLKPEIFAVLMDYLQSEKPIVNESEMLKGPED----TEIHPEDSD 116 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V IKE+L+ R++P V DGGD+++KG+ DG+V L M+G+C+GCPS+S TL+ G+ N+L Sbjct: 117 TVAMIKELLECRIKPMVQEDGGDVIYKGFLDGVVHLKMQGSCTGCPSSSVTLQSGIKNML 176 Query: 177 NHFVPEVKDIRTV 189 +VPEVKD+ V Sbjct: 177 QFYVPEVKDVMEV 189 >gi|58584670|ref|YP_198243.1| NifU family protein [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418986|gb|AAW71001.1| NifU family protein containing thioredoxin-like domain [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 190 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 91/189 (48%), Positives = 127/189 (67%), Gaps = 4/189 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ E+TPNP TLKF+PG +L E FSN E + S LA+ +F I + V+FG+D Sbjct: 1 MFIQIEETPNPNTLKFLPGFAILNERETADFSNPDEIKNSKLAADLFQIEHVIRVFFGHD 60 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FI+V K D W+ L+ +L +M+HF SG + G+ D + D F E+D +V Sbjct: 61 FISVTKSDGISWDILKVEILTTVMDHFTSGGKALDRKGVNDNNIPD--EEFFDENDIEIV 118 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 RIKE+++N ++PAVA+DGGDI F+GY+DGIV++ ++GACSGCPSA+ TLK GV N+L + Sbjct: 119 NRIKELMENYIKPAVAQDGGDIKFRGYKDGIVYVELQGACSGCPSAAITLKQGVQNMLCY 178 Query: 179 FVPEVKDIR 187 +PEV I Sbjct: 179 HIPEVSGIE 187 >gi|210075172|ref|XP_500339.2| YALI0B00264p [Yarrowia lipolytica] gi|199425114|emb|CAG82553.2| YALI0B00264p [Yarrowia lipolytica] Length = 263 Score = 242 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 79/192 (41%), Positives = 112/192 (58%), Gaps = 10/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQT TPN LKF+P +L EG + F++ +EA SPLA ++F + G+ SV FG D Sbjct: 46 MFIQTASTPNEDALKFLPSVQILPEGHTVEFTSGREAHSSPLAKKLFGVDGVRSVMFGSD 105 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K W L+P V ++ EH +G PI+ G + DS VV Sbjct: 106 FITVEKAQDTHWNTLKPEVFSILTEHITAGAPIVMEGTTA------AEDTAPCDDDSEVV 159 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+++ R+RPA+ DGGDI F+G+ + G+V L + GAC C S++ TLK G+ ++L Sbjct: 160 SMIKELIETRIRPAIQEDGGDIAFRGFDEDTGVVHLKLLGACRSCDSSAVTLKNGIESML 219 Query: 177 NHFVPEVKDIRT 188 H+V EV + Sbjct: 220 MHYVEEVTGVEQ 231 >gi|254295433|ref|YP_003061456.1| Scaffold protein Nfu/NifU [Hirschia baltica ATCC 49814] gi|254043964|gb|ACT60759.1| Scaffold protein Nfu/NifU [Hirschia baltica ATCC 49814] Length = 190 Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 124/191 (64%), Gaps = 7/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP TLKF+PG+ V + F N KEA SPLA+ +F++ G+ +V+ G DF Sbjct: 1 MFIQTEATPNPETLKFLPGREVSPKTPYEFLNEKEAGSSPLAAFLFTLKGVKTVFLGADF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 + + K + DW L+P L IM+HF+SG P++ + + + G+ ++ +V Sbjct: 61 VALTKTQETDWAILKPQALAAIMDHFVSGMPVMADYSDPAPVEEVIYEGE----NAEIVA 116 Query: 120 RIKEVLDNRVRPAVARDGGDIVFK--GYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+++ RVRPAVA DGGDI+F+ G+V L MRGAC+GCPS++ TLK G+ N+L Sbjct: 117 EIKELIETRVRPAVANDGGDIIFEKFDVDTGVVTLQMRGACAGCPSSTMTLKSGIENMLR 176 Query: 178 HFVPEVKDIRT 188 H+VPEV + Sbjct: 177 HYVPEVTAVEA 187 >gi|170747078|ref|YP_001753338.1| scaffold protein Nfu/NifU [Methylobacterium radiotolerans JCM 2831] gi|170653600|gb|ACB22655.1| Scaffold protein Nfu/NifU [Methylobacterium radiotolerans JCM 2831] Length = 188 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 100/191 (52%), Positives = 142/191 (74%), Gaps = 5/191 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+VVL E +A+ A SPLA+ +F++PG+A VYFG+DF Sbjct: 1 MFIQTEATPNPATLKFLPGRVVLAESTFEARDAEAAARSPLAAALFTVPGVAGVYFGHDF 60 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 I+V K D +W ++P VLG IMEHF SG P++ GG G++ + G + E+D V Sbjct: 61 ISVTKAEDGSEWAQVKPAVLGAIMEHFQSGAPVMAEGGHGEI---EPGDEFYDEADHDTV 117 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IK++L+ RVRPAVA DGGDI F+GY++G+V+L M+GACSGCPS++ TL++GV N+ H Sbjct: 118 VTIKDLLETRVRPAVAGDGGDITFRGYKEGVVYLEMKGACSGCPSSTATLRHGVQNLFRH 177 Query: 179 FVPEVKDIRTV 189 F+PE+++++ + Sbjct: 178 FLPEIREVQAI 188 >gi|198427432|ref|XP_002130447.1| PREDICTED: similar to NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) [Ciona intestinalis] Length = 284 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 79/194 (40%), Positives = 120/194 (61%), Gaps = 12/194 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT +TPNP LKF+PG VL G F + K + SPLA R+F I G+ +V+ G DF Sbjct: 72 MFIQTFETPNPNCLKFVPGVPVLGTGTADFPDWKNSYKSPLAKRLFGIEGVKAVFLGPDF 131 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGD-PIIHNGGLGDMKLDDMGSGDFIESDSAV 117 +TV + ++ W+ L+P + ++M+ F +G+ P++ + G + D + + Sbjct: 132 LTVTRQDEEVQWKVLKPEIYSLVMDFFTAGNIPVLTDEGPSADTVVDEDDDE-------I 184 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANI 175 V +KE+LD R+RP V DGGDI+FKG+ G V L ++G+CS CPS+S TLK G+ N+ Sbjct: 185 VAMVKELLDTRIRPTVMEDGGDIIFKGFDPETGSVKLKLQGSCSNCPSSSVTLKSGIENM 244 Query: 176 LNHFVPEVKDIRTV 189 L ++PEV ++ V Sbjct: 245 LKFYIPEVMEVEEV 258 >gi|315497209|ref|YP_004086013.1| scaffold protein nfu/nifu [Asticcacaulis excentricus CB 48] gi|315415221|gb|ADU11862.1| Scaffold protein Nfu/NifU [Asticcacaulis excentricus CB 48] Length = 188 Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats. Identities = 90/194 (46%), Positives = 123/194 (63%), Gaps = 12/194 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP LKFIPG+ VL +G++ F +AE SPLA +F I G++ VYFG DF Sbjct: 1 MFIQTEATPNPDVLKFIPGREVLGKGSMEFRTETDAEKSPLALSLFQIDGVSGVYFGSDF 60 Query: 61 ITVGKDQYD---WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 +TV +D W ++ P+L IM+ + SG I++ G + + + + Sbjct: 61 LTVKRDAEAGLIWAQIKAPILAAIMDFYASGRAILNEEG-------AVNERTYEGEVAQI 113 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFK--GYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 V IK++LD RVRPAVA+DGGDI F+ G ++L MRGACSGCPS+S TL+ GV ++ Sbjct: 114 VLEIKDLLDTRVRPAVAQDGGDIEFEHFDIESGTLYLHMRGACSGCPSSSATLRQGVESL 173 Query: 176 LNHFVPEVKDIRTV 189 + H+VPEVK I V Sbjct: 174 MKHYVPEVKTIEQV 187 >gi|296114423|ref|ZP_06833077.1| Scaffold protein Nfu/NifU [Gluconacetobacter hansenii ATCC 23769] gi|295979184|gb|EFG85908.1| Scaffold protein Nfu/NifU [Gluconacetobacter hansenii ATCC 23769] Length = 187 Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats. Identities = 91/192 (47%), Positives = 126/192 (65%), Gaps = 10/192 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKE-AEISPLASRIFSIPGIASVYFGY 58 MFI+TEDTPNPATLKF+PG+ ++ G F +A A S LA +F + G++ V+FG Sbjct: 1 MFIETEDTPNPATLKFLPGRELMPNGATADFIDADSVAGRSRLAEVLFDLEGVSRVFFGG 60 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 DF+ V K D W+ L+P VL ++ ++ +G + + + + D + Sbjct: 61 DFVAVTKADTVAWDELKPQVLSVVADYLATGQAPVEHEAV-------VIEDAIAPGDEEI 113 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V++IKE+LD RVRPAVA DGGDIVF+GYRDGIV L+M+GACSGCPS+ TLK+GV N+L Sbjct: 114 VKQIKELLDTRVRPAVAGDGGDIVFRGYRDGIVRLTMQGACSGCPSSRATLKHGVENMLR 173 Query: 178 HFVPEVKDIRTV 189 H+VPEV + V Sbjct: 174 HYVPEVVSVEQV 185 >gi|58699011|ref|ZP_00373859.1| NifU domain protein [Wolbachia endosymbiont of Drosophila ananassae] gi|225630807|ref|YP_002727598.1| NifU domain protein [Wolbachia sp. wRi] gi|58534475|gb|EAL58626.1| NifU domain protein [Wolbachia endosymbiont of Drosophila ananassae] gi|225592788|gb|ACN95807.1| NifU domain protein [Wolbachia sp. wRi] Length = 194 Score = 240 bits (612), Expect = 9e-62, Method: Composition-based stats. Identities = 90/189 (47%), Positives = 130/189 (68%), Gaps = 4/189 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ E+TPNP TLKF+PG +L EG FSNA E + S LA+ +F I + V+FG+D Sbjct: 5 MFIQIEETPNPNTLKFLPGFEILNEGETTDFSNANEIKNSKLAANLFQIEHVVRVFFGHD 64 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FI+V K +W+ L+ +L IM+HF SG + G+ D + D F ++D +V Sbjct: 65 FISVTKLGGINWDTLKVEILTTIMDHFTSGGKALDKEGVNDNNIPD--EEFFDKNDIEIV 122 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 RIKE++++ ++PAVA+DGGDI F+GY+DGIV++ ++GACSGCPSA+ TLK GV N+L++ Sbjct: 123 NRIKELMESYIKPAVAQDGGDIKFRGYKDGIVYVELQGACSGCPSAAITLKQGVQNMLSY 182 Query: 179 FVPEVKDIR 187 +PE+ I Sbjct: 183 HIPEIAGIE 191 >gi|58697437|ref|ZP_00372735.1| NifU domain protein [Wolbachia endosymbiont of Drosophila simulans] gi|58536136|gb|EAL59746.1| NifU domain protein [Wolbachia endosymbiont of Drosophila simulans] Length = 190 Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 90/189 (47%), Positives = 130/189 (68%), Gaps = 4/189 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ E+TPNP TLKF+PG +L EG FSNA E + S LA+ +F I + V+FG+D Sbjct: 1 MFIQIEETPNPNTLKFLPGFEILNEGETTDFSNANEIKNSKLAANLFQIEHVVRVFFGHD 60 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FI+V K +W+ L+ +L IM+HF SG + G+ D + D F ++D +V Sbjct: 61 FISVTKLGGINWDTLKVEILTTIMDHFTSGGKALDKEGVNDNNIPD--EEFFDKNDIEIV 118 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 RIKE++++ ++PAVA+DGGDI F+GY+DGIV++ ++GACSGCPSA+ TLK GV N+L++ Sbjct: 119 NRIKELMESYIKPAVAQDGGDIKFRGYKDGIVYVELQGACSGCPSAAITLKQGVQNMLSY 178 Query: 179 FVPEVKDIR 187 +PE+ I Sbjct: 179 HIPEIAGIE 187 >gi|87199010|ref|YP_496267.1| nitrogen-fixing NifU-like [Novosphingobium aromaticivorans DSM 12444] gi|87134691|gb|ABD25433.1| nitrogen-fixing NifU-like protein [Novosphingobium aromaticivorans DSM 12444] Length = 195 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 84/191 (43%), Positives = 129/191 (67%), Gaps = 3/191 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFI+TE TPNPATLKF+PG+ V+ G F + +EAE SPLA +F + + V FG DF Sbjct: 4 MFIETETTPNPATLKFLPGEQVMASGTREFVSHEEAEASPLAQALFDLGDVTGVLFGRDF 63 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDM--KLDDMGSGDFIESDSAV 117 ++V W L+P VL ++++HF++ P+ G G + D +D+ + Sbjct: 64 VSVTAAPGVAWADLKPQVLSLLLDHFVAQAPLFAPGSAGGIVVPADADEDFADDPADADI 123 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + +IK++++ RVRPAVA DGGDI+++G+R+G+V+L M+GACSGCPS++ TLK G+ ++L Sbjct: 124 IDQIKDLIETRVRPAVANDGGDIIYRGFREGVVYLKMQGACSGCPSSTATLKNGIESLLK 183 Query: 178 HFVPEVKDIRT 188 H+VPEV ++R Sbjct: 184 HYVPEVSEVRA 194 >gi|220678984|emb|CAX14771.1| novel protein similar to HIRA interacting protein 5 (hirip5, zgc:110319) [Danio rerio] Length = 233 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 76/185 (41%), Positives = 111/185 (60%), Gaps = 10/185 (5%) Query: 7 DTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK- 65 DTPNP +LKF+PG+ VL G F + AE SPLA +F I GI SV++G DFIT+ K Sbjct: 35 DTPNPRSLKFLPGKPVLGTGTQDFPTSASAESSPLARDLFQISGIKSVFYGPDFITLTKT 94 Query: 66 -DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEV 124 D +W ++ + +I + F G+ I + + E D +V IKE+ Sbjct: 95 DDDVEWTDIKRHAIEVISKFFEGGEAITTGAAHAESSVT--------EDDDEIVSLIKEL 146 Query: 125 LDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVK 184 LD R+RP V DGGD++FKG+ DG V L + G+C+GCPS++ TLK G+ N++ ++PEV Sbjct: 147 LDTRIRPTVQEDGGDVIFKGFEDGTVKLKLVGSCTGCPSSTVTLKNGIQNMMQFYIPEVD 206 Query: 185 DIRTV 189 ++ V Sbjct: 207 NVEQV 211 >gi|296817809|ref|XP_002849241.1| HIRA-interacting protein 5 [Arthroderma otae CBS 113480] gi|238839694|gb|EEQ29356.1| HIRA-interacting protein 5 [Arthroderma otae CBS 113480] Length = 304 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 76/203 (37%), Positives = 119/203 (58%), Gaps = 14/203 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FI+T+ TPN LKF P VL EG + + + SPLA+++ ++ G+ Sbjct: 72 IFIETDTTPNADALKFRPNHPVLPEGFPVSFLEYLTPRSTLQPPYPSPLAAKLLNVDGVV 131 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH-----NGGLGDMKLDDMG 106 SV+FG DFITV KD +W H++P V +I E +G+ +I+ G G + + Sbjct: 132 SVFFGSDFITVTKDSDANWAHIKPEVFSLITEAITTGEALINIVDVRPGKEGAEEAEMEE 191 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + + E D +V I+E+L+ R+RPA+ DGGDI F+G+ +G V L +RGAC C S++ Sbjct: 192 AVRYNEEDEEIVGMIQELLETRIRPAIQEDGGDIEFRGFENGNVMLKLRGACRTCDSSTV 251 Query: 167 TLKYGVANILNHFVPEVKDIRTV 189 TLK G+ ++L H++ EVK + V Sbjct: 252 TLKNGIESMLMHYIEEVKSVTQV 274 >gi|42520881|ref|NP_966796.1| NifU domain-containing protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410621|gb|AAS14730.1| NifU domain protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 191 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 91/189 (48%), Positives = 129/189 (68%), Gaps = 7/189 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ E+TPNP TLKF+PG +L EG FSNA E + S LA+ +F I + V+FG+D Sbjct: 5 MFIQIEETPNPNTLKFLPGFEILNEGETADFSNANEIKNSKLAANLFQIEHVVRVFFGHD 64 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FI+V K D +W+ L+ VL IM HF SG L +++D F ++D +V Sbjct: 65 FISVTKLDGINWDILKVEVLTTIMNHFTSG-----GKALDKEEVNDPDEEFFDKNDIEIV 119 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 RIKE++++ ++PAVA+DGGDI F+GY+DGIV++ ++GACSGCPSA+ TLK GV N+L++ Sbjct: 120 NRIKELMESHIKPAVAQDGGDIKFRGYKDGIVYVELQGACSGCPSAAITLKQGVQNMLSY 179 Query: 179 FVPEVKDIR 187 +PE+ I Sbjct: 180 HIPEIAGIE 188 >gi|315052166|ref|XP_003175457.1| hypothetical protein MGYG_02982 [Arthroderma gypseum CBS 118893] gi|311340772|gb|EFQ99974.1| hypothetical protein MGYG_02982 [Arthroderma gypseum CBS 118893] Length = 301 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 74/202 (36%), Positives = 116/202 (57%), Gaps = 13/202 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FI+T+ TPN LKF P VL EG + + N + SPLA+++ ++ G Sbjct: 72 IFIETDTTPNADALKFRPNHPVLPEGFPVSFLEYLNPRSTLQPPYPSPLAAKLLNVDGAV 131 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH----NGGLGDMKLDDMGS 107 SV+FG DFITV KD +W H++P + +I E G+ +++ G + + Sbjct: 132 SVFFGSDFITVTKDSDANWAHIKPEIFSLITEAITRGEALVNVVDVRPGKEGAEEVGEEA 191 Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASET 167 + E D +V I+E+L+ R+RPA+ DGGDI F+G+ +G V L +RGAC C S++ T Sbjct: 192 VRYNEEDEEIVGMIQELLETRIRPAIQEDGGDIEFRGFENGNVLLKLRGACRTCDSSTVT 251 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 LK G+ ++L H++ EVK + V Sbjct: 252 LKNGIESMLMHYIEEVKSVTQV 273 >gi|330799706|ref|XP_003287883.1| hypothetical protein DICPUDRAFT_20344 [Dictyostelium purpureum] gi|325082086|gb|EGC35580.1| hypothetical protein DICPUDRAFT_20344 [Dictyostelium purpureum] Length = 203 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQTE TPNP +LKFIPG VL +G + F + K +++SPLA+ +F I G+ V+F D Sbjct: 4 IFIQTETTPNPDSLKFIPGVEVLSDGQIMDFPDFKSSQVSPLANSLFKIEGVNRVFFSSD 63 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FI+V K + DW L+P + G I++ + SG PI+ D + DS VV Sbjct: 64 FISVNKYPEQDWAALKPEIYGAIIDFYNSGSPILSE-----HSSDINTDTTILPEDSEVV 118 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+++ R+RP V DGG+I + G+ DGIV + ++G CS C S+ TLK G+ +L H Sbjct: 119 AMIKELIETRIRPTVLEDGGNIKYMGFADGIVLVQLQGTCSSCSSSQATLKGGIERMLMH 178 Query: 179 FVPEVKDIRTV 189 ++ EVK + + Sbjct: 179 WIAEVKGVVAI 189 >gi|320585764|gb|EFW98443.1| NifU [Grosmannia clavigera kw1407] Length = 370 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 79/209 (37%), Positives = 117/209 (55%), Gaps = 24/209 (11%) Query: 5 TEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIASVYF 56 TE TPN +KF+P VL EG I + + + SPLA+++ ++ G+ +V++ Sbjct: 121 TESTPNADAIKFLPNHQVLPEGIASPFIEYLSPRATIAPPYPSPLAAQLMNVDGVTAVFY 180 Query: 57 GYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPII---------------HNGGLGDM 100 G DFITV K +W H+RP V +I E SG I+ +G + Sbjct: 181 GSDFITVTKATDANWAHIRPEVFALITEAITSGQAIVRPSATGSAGAEGVDGTHGEGAEA 240 Query: 101 KLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSG 160 + S + E+DS VV IKE+L+ R+RPA+ DGGDI F+G+ DG V L +RGAC Sbjct: 241 EAVHEDSLQYNENDSEVVGMIKELLETRIRPAIQEDGGDIEFRGFEDGEVLLKLRGACRT 300 Query: 161 CPSASETLKYGVANILNHFVPEVKDIRTV 189 C S++ TLK G+ ++L H++ EVK +R V Sbjct: 301 CDSSTVTLKNGIESMLMHYIEEVKVVRQV 329 >gi|118356024|ref|XP_001011271.1| NifU-like domain containing protein [Tetrahymena thermophila] gi|89293038|gb|EAR91026.1| NifU-like domain containing protein [Tetrahymena thermophila SB210] Length = 225 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 75/194 (38%), Positives = 119/194 (61%), Gaps = 12/194 (6%) Query: 1 MFIQTEDTPNPATLKFIP-GQVVLVEGA-IHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 +FIQ + TPNP LKF+P G+ V+ +G + F A+ A +SPLA ++F+I G+ V++G Sbjct: 25 LFIQAKSTPNPNFLKFVPSGKTVMNDGTTLDFIAARYAHVSPLAKKLFTIDGVNRVFYGK 84 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 D+I++ K + DW L+P + +I E F P+ + + + DS Sbjct: 85 DYISISKKEDADWNELKPQIFSLITEQFTGTTPLFTDE-------PEREDTKIKDDDSEA 137 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANI 175 VQ IKE++D R+RP V DGGD++++ + + GIV L+M G+CSGCPS+ TLK G+ + Sbjct: 138 VQMIKEIIDTRIRPLVQDDGGDVIYRNFDEPSGIVTLTMMGSCSGCPSSQVTLKQGIEKM 197 Query: 176 LNHFVPEVKDIRTV 189 + H+VPEV + +V Sbjct: 198 IMHYVPEVNGVESV 211 >gi|145507614|ref|XP_001439762.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124406957|emb|CAK72365.1| unnamed protein product [Paramecium tetraurelia] Length = 207 Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats. Identities = 81/192 (42%), Positives = 120/192 (62%), Gaps = 5/192 (2%) Query: 1 MFIQTEDTPNPATLKFIP-GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQ + TPNP LKFIP G+ V++ G FS +EA+ SPLA ++F I G+ V++G D Sbjct: 10 LFIQAKPTPNPNFLKFIPDGKQVMLNGTYDFSRPREAKCSPLAQKLFMIDGVNRVFYGKD 69 Query: 60 FITVGKDQYD-WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +I++ K++ WE L+P + IMEH+ + D ++ E DS + Sbjct: 70 YISISKNEESKWEELKPQIFEQIMEHYQLDAEGKEKQLIIDGYSENQ-DTQIKEEDSEAI 128 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANIL 176 Q IKE++D R+RP V DGGDIVF+ + +GIV L M+G+C+GCPS+S TLK G+ +L Sbjct: 129 QLIKEIIDTRIRPTVQEDGGDIVFRDFDEQNGIVHLYMKGSCAGCPSSSITLKNGIERML 188 Query: 177 NHFVPEVKDIRT 188 H+V EVK++ Sbjct: 189 CHYVAEVKEVVA 200 >gi|302657114|ref|XP_003020287.1| hypothetical protein TRV_05641 [Trichophyton verrucosum HKI 0517] gi|291184105|gb|EFE39669.1| hypothetical protein TRV_05641 [Trichophyton verrucosum HKI 0517] Length = 304 Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats. Identities = 75/203 (36%), Positives = 116/203 (57%), Gaps = 14/203 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FI+T+ TPN LKF P VL EG + + + SPLA+++ ++ G Sbjct: 72 IFIETDTTPNADALKFRPNHPVLPEGFPVSFLEYLTPRSTLQPPYPSPLAAKLLNVDGAV 131 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH-----NGGLGDMKLDDMG 106 SV+FG DFITV KD +W H++P + +I E G+ +++ G G + Sbjct: 132 SVFFGSDFITVTKDSDANWAHIKPEIFSLITEAITRGEALVNVVDVRQGKEGAEGAEAEE 191 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + + E D VV I+E+L+ R+RPA+ DGGDI F+G+ +G V L +RGAC C S++ Sbjct: 192 AVRYNEEDEEVVGMIQELLETRIRPAIQEDGGDIEFRGFENGNVLLKLRGACRTCDSSTV 251 Query: 167 TLKYGVANILNHFVPEVKDIRTV 189 TLK G+ ++L H++ EVK + V Sbjct: 252 TLKNGIESMLMHYIEEVKSVTQV 274 >gi|148697451|gb|EDL29398.1| mCG14627 [Mus musculus] Length = 181 Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats. Identities = 79/174 (45%), Positives = 107/174 (61%), Gaps = 8/174 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + FS A SPLA ++F I G+ SV+FG DF Sbjct: 1 MFIQTQDTPNPNSLKFIPGKRVLETRTMDFSTPAAAFRSPLARQLFRIEGVKSVFFGPDF 60 Query: 61 ITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ + DW L+P + IM+ F SG P++ + E D VV Sbjct: 61 ITVTKENGELDWNLLKPDIHATIMDFFASGLPLVTE------ETPPPPGEAGSEEDDGVV 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 IKE+LD R+RP V DGGD++++ + DGIV L ++G+C CPS+ TLK G+ Sbjct: 115 AMIKELLDTRIRPTVQEDGGDVIYRAFEDGIVRLKLQGSCPSCPSSIITLKSGI 168 >gi|145505407|ref|XP_001438670.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124405842|emb|CAK71273.1| unnamed protein product [Paramecium tetraurelia] Length = 207 Score = 237 bits (605), Expect = 7e-61, Method: Composition-based stats. Identities = 81/192 (42%), Positives = 121/192 (63%), Gaps = 5/192 (2%) Query: 1 MFIQTEDTPNPATLKFIPG-QVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQ + TPNP LKFIPG + V++ G F+ +EA+ SPLA ++F I G+ V++G D Sbjct: 10 LFIQAKPTPNPNFLKFIPGGKQVMLNGTYDFTRPREAKCSPLAQKLFLIDGVTRVFYGKD 69 Query: 60 FITV-GKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +I++ K++ WE ++P + IMEH+ + D ++ E DS VV Sbjct: 70 YISIAKKEESRWEEIKPQIFEHIMEHYQLDSDGQEKKLIIDGYQENQ-DTQINEDDSEVV 128 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 Q IKE++D R+RP V DGGDIVF+ + + GIV L M+G+C+GCPS+S TLK G+ +L Sbjct: 129 QLIKEIIDTRIRPTVQEDGGDIVFRDFDEKSGIVQLYMKGSCAGCPSSSVTLKNGIERML 188 Query: 177 NHFVPEVKDIRT 188 H+V EVK++ Sbjct: 189 CHYVAEVKEVVA 200 >gi|289620358|emb|CBI53216.1| unnamed protein product [Sordaria macrospora] Length = 290 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 77/195 (39%), Positives = 112/195 (57%), Gaps = 29/195 (14%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +FIQTE+TPNP +LKF+P +++ +I G+ SV++G DF Sbjct: 78 IFIQTENTPNPDSLKFLPN-----------------------TKLMNIDGVTSVFYGTDF 114 Query: 61 ITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH-----NGGLGDMKLDDMGSGDFIESD 114 ITV K +W H+RP V +I E SG I++ G + D+ S + E+D Sbjct: 115 ITVTKSADANWAHIRPEVFALITETITSGQTIVNVVERREGEENTQESDEKDSLAYDEND 174 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 S VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C S++ TLK G+ Sbjct: 175 SEVVGMIKELLETRIRPAIQEDGGDIEFRGFEDGIVKLKLRGACRTCDSSTVTLKNGIEG 234 Query: 175 ILNHFVPEVKDIRTV 189 +L H++ EV+ + V Sbjct: 235 MLMHYIEEVQGVEQV 249 >gi|326475115|gb|EGD99124.1| NifU domain-containing protein [Trichophyton tonsurans CBS 112818] gi|326482250|gb|EGE06260.1| scaffold protein Nfu/NifU [Trichophyton equinum CBS 127.97] Length = 304 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 76/203 (37%), Positives = 116/203 (57%), Gaps = 14/203 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FI+T+ TPN LKF P VL EG + + + SPLA+++ ++ G Sbjct: 72 IFIETDTTPNADALKFRPNHPVLPEGFPVSFLEYLTPRSTLQPPYPSPLAAKLLNVDGAV 131 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH-----NGGLGDMKLDDMG 106 SV+FG DFITV KD +W H++P V +I E G+ +++ G G + Sbjct: 132 SVFFGSDFITVTKDSDANWAHIKPEVFSLITEAITRGEALVNVVDVRPGKEGAEGAEAEE 191 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + + E D VV I+E+L+ R+RPA+ DGGDI F+G+ +G V L +RGAC C S++ Sbjct: 192 AVRYNEEDEEVVGMIQELLETRIRPAIQEDGGDIEFRGFENGNVLLKLRGACRTCDSSTV 251 Query: 167 TLKYGVANILNHFVPEVKDIRTV 189 TLK G+ ++L H++ EVK + V Sbjct: 252 TLKNGIESMLMHYIEEVKSVTQV 274 >gi|258565761|ref|XP_002583625.1| HIRA-interacting protein 5 [Uncinocarpus reesii 1704] gi|237907326|gb|EEP81727.1| HIRA-interacting protein 5 [Uncinocarpus reesii 1704] Length = 316 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 115/206 (55%), Gaps = 20/206 (9%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNA-----------KEAEISPLASRIFSIP 49 +FIQTE TPN LKFIP VL + F SPLA+++F++ Sbjct: 72 IFIQTETTPNADALKFIPNFTVLPK---DFPTPFLEYLSPRSTLAPPHPSPLAAKLFNVD 128 Query: 50 GIASVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMG-- 106 G++SV++G DFIT+ K W H++P V +I E SG+ +++ D Sbjct: 129 GVSSVFYGPDFITITKAGDASWAHIKPEVFSLITEAVTSGEQLVNTVAAKDGAEPGQEGS 188 Query: 107 ---SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPS 163 + ++ E D +V I+E+L+ R+RPA+ DGGDI F+G++DG V L +RGAC C S Sbjct: 189 AEEAPEYAEEDEEIVGMIQELLETRIRPAIQEDGGDIEFRGFKDGNVMLKLRGACRTCDS 248 Query: 164 ASETLKYGVANILNHFVPEVKDIRTV 189 ++ TLK G+ ++L H++ EV + V Sbjct: 249 STVTLKNGIESMLMHYIEEVTSVTQV 274 >gi|329847368|ref|ZP_08262396.1| scaffold protein Nfu/NifU [Asticcacaulis biprosthecum C19] gi|328842431|gb|EGF92000.1| scaffold protein Nfu/NifU [Asticcacaulis biprosthecum C19] Length = 188 Score = 234 bits (597), Expect = 5e-60, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 124/194 (63%), Gaps = 12/194 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP +KF+PGQVVL +G F + EA++SPLA +F I G+++++FG DF Sbjct: 1 MFIQTEATPNPDVIKFLPGQVVLAQGTKQFVSEDEAKVSPLAEALFKIDGVSALFFGSDF 60 Query: 61 ITVGKD-QYD--WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 +TV +D W L+PP+L IM+ + SG PI+ + + + Sbjct: 61 LTVRRDPDATLIWAQLKPPILAAIMDFYTSGQPILRE-------TEVKTETVYEGELGQI 113 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + IK++LD RVRPAVA+DGGDI F + G ++L MRGAC+GCPS+S TL+ GV ++ Sbjct: 114 IAEIKDLLDTRVRPAVAQDGGDIEFDSFDMESGTLYLHMRGACAGCPSSSATLRQGVESL 173 Query: 176 LNHFVPEVKDIRTV 189 + H+VPEV+ I V Sbjct: 174 MKHYVPEVRHIEAV 187 >gi|111035797|emb|CAL29424.1| NifU-related protein [Wolbachia endosymbiont of Onchocerca volvulus] Length = 194 Score = 234 bits (597), Expect = 5e-60, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 130/191 (68%), Gaps = 4/191 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ ++TPN TLKF+PG ++L EG + FS+A E + S LA+ +F I + V+FG+D Sbjct: 5 MFIQIKETPNLNTLKFLPGFMILNEGETVDFSSANETKNSKLAANLFRIEHVIRVFFGHD 64 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FI+V K D +W L+ VL IM+HF S + G D D + F +SD+ +V Sbjct: 65 FISVTKSDDINWNTLKVEVLTTIMDHFASSGKALDREGTNDN--DILEEEFFDKSDTEIV 122 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 RI+E++++ ++PAV +DGGDI F+GY++GIV++ ++GACSGCPSA+ TLK G+ N+L + Sbjct: 123 SRIRELMESYIKPAVVQDGGDIKFRGYKNGIVYVELQGACSGCPSATITLKQGIQNMLCY 182 Query: 179 FVPEVKDIRTV 189 +PE+ I T+ Sbjct: 183 HIPEILGIDTI 193 >gi|296223650|ref|XP_002757718.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like [Callithrix jacchus] Length = 235 Score = 233 bits (595), Expect = 9e-60, Method: Composition-based stats. Identities = 78/193 (40%), Positives = 110/193 (56%), Gaps = 15/193 (7%) Query: 2 FIQTEDTPNPATLKF---IPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 F+Q P PA F +PG+ VL + F A SPLA ++F I G+ SV+FG Sbjct: 40 FVQRPLFPLPAA--FCNPVPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGP 97 Query: 59 DFITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 DFITV K+ + DW L+P + IM+ F SG P++ E D Sbjct: 98 DFITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAG--------SEEDDE 149 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 VV IKE+LD R+RP V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 150 VVAMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNML 209 Query: 177 NHFVPEVKDIRTV 189 ++PEV+ + V Sbjct: 210 QFYIPEVEGVEQV 222 >gi|169608792|ref|XP_001797815.1| hypothetical protein SNOG_07481 [Phaeosphaeria nodorum SN15] gi|111063827|gb|EAT84947.1| hypothetical protein SNOG_07481 [Phaeosphaeria nodorum SN15] Length = 263 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 80/199 (40%), Positives = 117/199 (58%), Gaps = 13/199 (6%) Query: 4 QTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIASVY 55 +TE TPN LKF P Q VL E + + N + SPLA+++ +I G+ SV+ Sbjct: 24 KTEPTPNDDALKFNPNQRVLPESISSPFLEYLNPRSTLAPPHPSPLAAQLLNIDGVTSVF 83 Query: 56 FGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHN----GGLGDMKLDDMGSGDF 110 G D ITV KD W H++P V +I E SG P+++ G ++ S + Sbjct: 84 LGLDHITVTKDTSTPWAHIKPEVFAIINEFMTSGQPLVNTIADKGNEQGQGNSEVDSLAY 143 Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 E+DS VVQ IKE+L+ R+RP++ DGGDI F+G+ DG V L +RGAC C S++ TLK Sbjct: 144 DENDSEVVQMIKELLETRIRPSIQEDGGDIDFRGFNDGQVLLKLRGACRTCDSSTVTLKN 203 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ ++L H++ EVK ++ V Sbjct: 204 GIESMLMHYIEEVKGVQQV 222 >gi|149238520|ref|XP_001525136.1| HIRA-interacting protein 5 [Lodderomyces elongisporus NRRL YB-4239] gi|146450629|gb|EDK44885.1| HIRA-interacting protein 5 [Lodderomyces elongisporus NRRL YB-4239] Length = 292 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 81/193 (41%), Positives = 115/193 (59%), Gaps = 9/193 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT +TPN LKF+P +L E F + +EA SPLA R+FSI GI S+ FG + Sbjct: 68 LFIQTAETPNDHALKFLPSLQILGENETREFLSGREAHSSPLAVRLFSIDGIKSIMFGSN 127 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FIT+ K QY+W L+P + ++ E+ G PI++ F E D VV Sbjct: 128 FITIEKLPQYEWALLKPEIFSILTEYLNQGLPIMNEEEGALA-----DDVAFNEDDDEVV 182 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANIL 176 Q IKE++ R+RPA+ DGGDI F +R DG VFL ++GAC C S+S TLK G+ ++L Sbjct: 183 QMIKELIFTRIRPAIQDDGGDIEFVEFRESDGTVFLRLKGACRSCDSSSVTLKNGIESML 242 Query: 177 NHFVPEVKDIRTV 189 H++ EV+ + + Sbjct: 243 KHYIEEVQSVEPI 255 >gi|162312172|ref|NP_595452.2| NifU-like protein [Schizosaccharomyces pombe 972h-] gi|46397296|sp|Q9UUB8|YH9J_SCHPO RecName: Full=NifU-like protein C1709.19c gi|157310401|emb|CAA21258.2| NifU-like protein [Schizosaccharomyces pombe] Length = 260 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 74/194 (38%), Positives = 117/194 (60%), Gaps = 10/194 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE--GAIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 ++I++E+TPN LKF+PG +L G+ F + SPLA ++F I G+ S++FG Sbjct: 43 IWIRSEETPNENALKFLPGLDILPPTIGSCEFMRGQGTVNSPLAQKLFDIDGVDSIFFGK 102 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 DFITV K +W ++P V +IMEH +G P++ L +ESDS + Sbjct: 103 DFITVSKGAGTEWAQMKPEVFSVIMEHLSNGSPVLSEEPLKGA-----SDTQILESDSQI 157 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE+++ +RP++ DGGD+ F+G+ + G V L +RGAC C S++ TLK G+ + Sbjct: 158 VAMIKELIETSIRPSIQEDGGDVEFRGFDEKTGTVSLKLRGACRTCSSSAVTLKNGIQQM 217 Query: 176 LNHFVPEVKDIRTV 189 L H++PEV+++ V Sbjct: 218 LKHYIPEVENVVQV 231 >gi|23006361|ref|ZP_00048716.1| COG0694: Thioredoxin-like proteins and domains [Magnetospirillum magnetotacticum MS-1] Length = 184 Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats. Identities = 91/179 (50%), Positives = 125/179 (69%), Gaps = 5/179 (2%) Query: 13 TLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKDQY--DW 70 TLKF+PG+VVL EG +A AE SPLAS +F++PG++ VYFG+DFI+V K +W Sbjct: 9 TLKFLPGRVVLTEGTFEARDASSAERSPLASALFAVPGVSGVYFGHDFISVTKADGVNEW 68 Query: 71 EHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVR 130 ++P VLG IM+HF SG P++ G +D + E+D V IK++L+ RVR Sbjct: 69 PQVKPAVLGAIMDHFQSGRPVLAEGT---ALAEDDAEEFYDEADHDTVATIKDLLETRVR 125 Query: 131 PAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 PAVA DGGDI F+GYRDGIV+L M+GACSGCPS++ TL+ GV N+ HF+P V++++ V Sbjct: 126 PAVAGDGGDITFRGYRDGIVYLEMKGACSGCPSSTATLRQGVQNLFRHFLPSVREVQAV 184 >gi|182678037|ref|YP_001832183.1| scaffold protein Nfu/NifU [Beijerinckia indica subsp. indica ATCC 9039] gi|182633920|gb|ACB94694.1| Scaffold protein Nfu/NifU [Beijerinckia indica subsp. indica ATCC 9039] Length = 187 Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats. Identities = 92/189 (48%), Positives = 139/189 (73%), Gaps = 2/189 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PG+ V+ G + A A+ SPLA +F++ G++ V+FG DF Sbjct: 1 MFIQTEATPNPATLKFLPGRPVMRLGTLDIREADGAKKSPLAEALFALEGVSGVFFGSDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 I+V + Q DW+ ++P VLG IMEH++SG P++ + D++ + G + E+D+ V Sbjct: 61 ISVTRQQGDWQDIKPAVLGAIMEHYLSGAPLLTDE--ADLQPQNDGEEFYAEADAHTVAT 118 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IK+++++ VRPAVA+DGGDI F+G+R+G V+L+M+G+CSGCPS+S TL++GV N+L H+V Sbjct: 119 IKQLIESHVRPAVAKDGGDIKFRGFREGTVYLAMKGSCSGCPSSSATLRHGVQNLLKHYV 178 Query: 181 PEVKDIRTV 189 PEV + + Sbjct: 179 PEVVSVEQI 187 >gi|302500846|ref|XP_003012416.1| hypothetical protein ARB_01375 [Arthroderma benhamiae CBS 112371] gi|291175974|gb|EFE31776.1| hypothetical protein ARB_01375 [Arthroderma benhamiae CBS 112371] Length = 264 Score = 230 bits (587), Expect = 7e-59, Method: Composition-based stats. Identities = 75/203 (36%), Positives = 115/203 (56%), Gaps = 14/203 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FI+T+ TPN LKF P VL EG + + + SPLA+++ ++ G Sbjct: 32 IFIETDTTPNADALKFRPNHPVLPEGFPVSFLEYLTPRSTLQPPYPSPLAAKLLNVDGAV 91 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH-----NGGLGDMKLDDMG 106 SV+FG DFITV KD +W H++P + +I E G+ +++ G G Sbjct: 92 SVFFGSDFITVTKDSDANWAHIKPEIFSLITEAITRGEALVNVVDVRQGKEGAEGAGAEE 151 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + + E D VV I+E+L+ R+RPA+ DGGDI F+G+ +G V L +RGAC C S++ Sbjct: 152 AVRYNEEDEEVVGMIQELLETRIRPAIQEDGGDIEFRGFENGNVLLKLRGACRTCDSSTV 211 Query: 167 TLKYGVANILNHFVPEVKDIRTV 189 TLK G+ ++L H++ EVK + V Sbjct: 212 TLKNGIESMLMHYIEEVKSVTQV 234 >gi|226480566|emb|CAX73380.1| HIRA interacting protein 5 [Schistosoma japonicum] gi|226480792|emb|CAX73493.1| HIRA interacting protein 5 [Schistosoma japonicum] Length = 233 Score = 230 bits (586), Expect = 9e-59, Method: Composition-based stats. Identities = 83/190 (43%), Positives = 119/190 (62%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +FIQ ++TPNP +LK+ PGQ VL G F + K+A SPLA ++F I G+ V+FG DF Sbjct: 25 LFIQAQETPNPNSLKYFPGQAVLGSGTRDFPSRKQAGSSPLARQLFRIEGVEQVFFGPDF 84 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 IT+ K + ++W ++P V IM+ + SG P+I + S E D V Sbjct: 85 ITITKNNDFEWAVIKPDVYATIMDFYSSGQPVIDEEKSQE-------SDKPCEVDDETVL 137 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+LD R+RP V DGGDI++KG++DGIV L ++G+CS CPS+ TLK GV N+L + Sbjct: 138 MIKELLDTRIRPTVQEDGGDIIYKGFKDGIVLLKLQGSCSSCPSSVVTLKNGVQNMLQFY 197 Query: 180 VPEVKDIRTV 189 +P+V + V Sbjct: 198 IPDVLGVEQV 207 >gi|148284929|ref|YP_001249019.1| hypothetical protein OTBS_1710 [Orientia tsutsugamushi str. Boryong] gi|189184851|ref|YP_001938636.1| thioredoxin-like protein [Orientia tsutsugamushi str. Ikeda] gi|146740368|emb|CAM80805.1| conserved hypothetical protein [Orientia tsutsugamushi str. Boryong] gi|189181622|dbj|BAG41402.1| thioredoxin-like protein [Orientia tsutsugamushi str. Ikeda] Length = 182 Score = 230 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 76/190 (40%), Positives = 111/190 (58%), Gaps = 9/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP +LKF P Q + +HFS +E S LA ++FSI + V+FG DF Sbjct: 1 MFIQTQQTPNPNSLKFFPDQKISPGNPVHFSTREECTHSILARKLFSIENVKEVFFGEDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ITV K WE ++P +L M+M+HF++G P+ + S + + Sbjct: 61 ITVTKVSDGSWEVIKPEILTMLMDHFVAGLPVFESEAEKKNIEQANLSEIEKQIIEIINT 120 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +++ PAVA DGGDI + ++DGIV L MRGAC GCPS++ TLK G+ ++L ++ Sbjct: 121 KVR--------PAVAMDGGDIEYHSFKDGIVKLQMRGACVGCPSSTMTLKQGIESLLKYY 172 Query: 180 VPEVKDIRTV 189 +PEV + V Sbjct: 173 IPEVVSVEQV 182 >gi|254566581|ref|XP_002490401.1| Protein involved in iron metabolism in mitochondria [Pichia pastoris GS115] gi|238030197|emb|CAY68120.1| Protein involved in iron metabolism in mitochondria [Pichia pastoris GS115] Length = 249 Score = 230 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 73/193 (37%), Positives = 112/193 (58%), Gaps = 7/193 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE-GAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT+ TPN LKF+P +L E I F N ++A SPLA ++F I G+ ++ G+D Sbjct: 21 LFIQTQTTPNDDALKFLPSMKILPEQTTIEFLNGRQAFKSPLALKLFGIDGVKTIMIGHD 80 Query: 60 FITV-GKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K Q DW L+P + ++ E +G P+++ D + + + VV Sbjct: 81 FITVEKKTQDDWSLLKPEIFAVLTESLNNGTPVLNEQHQSDANDQALLEE---DDEDEVV 137 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFK--GYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +KE++ R+RPA+ DGGDI F Y G V+L +RGAC C S+S TLK G+ ++L Sbjct: 138 SMVKELIFTRIRPAIQDDGGDIEFVRFEYETGTVYLRLRGACRSCSSSSITLKNGIESML 197 Query: 177 NHFVPEVKDIRTV 189 H++ EV+ + + Sbjct: 198 KHYIEEVEAVEQI 210 >gi|73667413|ref|YP_303429.1| nitrogen-fixing NifU, C-terminal [Ehrlichia canis str. Jake] gi|72394554|gb|AAZ68831.1| Nitrogen-fixing NifU, C-terminal [Ehrlichia canis str. Jake] Length = 186 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 83/190 (43%), Positives = 127/190 (66%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQ E+TPNP TLKF+PG V F++ AE SPLA+ +F + + V+FG DF Sbjct: 1 MFIQIEETPNPNTLKFMPGVPVNNGKVSEFADNIAAESSPLAAALFKVEHVKGVFFGGDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +++ K D+ +W+ L+P VL +IME ++ G + ++ F E D +V Sbjct: 61 VSITKSDEIEWDVLKPEVLTVIMEFLT-----LNPGDSTEDFNEEETDEFFDEKDVEMVD 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE++++ V+PAV +DGGDI FKGY +GIVF+ +RGACSGCPSAS TLK G+ N+L+++ Sbjct: 116 KIKELINDYVKPAVMQDGGDIKFKGYSNGIVFVKLRGACSGCPSASITLKEGIYNMLSYY 175 Query: 180 VPEVKDIRTV 189 +P+++ + +V Sbjct: 176 IPDIQGVESV 185 >gi|301107396|ref|XP_002902780.1| iron-sulfur cluster scaffold protein Nfu-like protein [Phytophthora infestans T30-4] gi|262097898|gb|EEY55950.1| iron-sulfur cluster scaffold protein Nfu-like protein [Phytophthora infestans T30-4] Length = 217 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 80/195 (41%), Positives = 122/195 (62%), Gaps = 14/195 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA---IHF-SNAKEAEISPLASRIFSIPGIASVYF 56 MFIQTE TPNP ++KF+PG+ VL E + F +++E SPLA ++F I G+ V+F Sbjct: 1 MFIQTEPTPNPLSVKFLPGRSVLDERFTTGVDFTPSSEEVRRSPLAKKLFQIEGVTRVFF 60 Query: 57 GYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDS 115 G DFI+V K ++ DW+ L + IM+ F S + ++ + + + + D Sbjct: 61 GKDFISVTKTEEEDWDALNAEIFATIMDFFASDEQVMSDEPI-------VTDTTILPDDD 113 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVA 173 VV IKE+L+ R+RP+V DGGDI +KG+ + G V + + G+C+GCPS+S TLK+GV Sbjct: 114 EVVAMIKELLEQRIRPSVQDDGGDIFYKGFDEKTGTVSVQLAGSCAGCPSSSVTLKHGVE 173 Query: 174 NILNHFVPEVKDIRT 188 N+L H++PEV+ I Sbjct: 174 NMLKHYIPEVRGIEE 188 >gi|165933598|ref|YP_001650387.1| mitochondrial-type Fe-S cluster assembly protein NFU [Rickettsia rickettsii str. Iowa] gi|165908685|gb|ABY72981.1| mitochondrial-type Fe-S cluster assembly protein NFU [Rickettsia rickettsii str. Iowa] Length = 190 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 81/191 (42%), Positives = 126/191 (65%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQT DTPNP + F PGQ + + + FS E + S LA +F I + SV+FG D Sbjct: 1 MFIQTADTPNPDAITFFPGQKISSDQPVFFSELAEVKGRSKLAESLFYINNVKSVFFGSD 60 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K + +W+ ++P +L +IM+HF+SG P+ D ++ + S + Sbjct: 61 FITVTKQAEGNWQVIKPEILMVIMDHFVSGLPVFEENTKADNVNHNL------DGLSEIE 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I E+++ RVRP+VA+DGGDI++KG+ +G+V L++RGAC GCPS++ TL+ G+ ++L H Sbjct: 115 KQIVEIIETRVRPSVAQDGGDIIYKGFENGVVKLALRGACLGCPSSTITLRNGIESMLKH 174 Query: 179 FVPEVKDIRTV 189 FVPEV+++ V Sbjct: 175 FVPEVQEVEAV 185 >gi|157828872|ref|YP_001495114.1| hypothetical protein A1G_05615 [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801353|gb|ABV76606.1| hypothetical protein A1G_05615 [Rickettsia rickettsii str. 'Sheila Smith'] Length = 190 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 81/191 (42%), Positives = 126/191 (65%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQT DTPNP + F PGQ + + + FS E + S LA +F I + SV+FG D Sbjct: 1 MFIQTADTPNPDAITFFPGQEISSDQPVFFSELAEVKGRSKLAESLFYINNVKSVFFGSD 60 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K + +W+ ++P +L +IM+HF+SG P+ D ++ + S + Sbjct: 61 FITVTKQAEGNWQVIKPEILMVIMDHFVSGLPVFEENTKADNVNHNL------DGLSEIE 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I E+++ RVRP+VA+DGGDI++KG+ +G+V L++RGAC GCPS++ TL+ G+ ++L H Sbjct: 115 KQIVEIIETRVRPSVAQDGGDIIYKGFENGVVKLALRGACLGCPSSTITLRNGIESMLKH 174 Query: 179 FVPEVKDIRTV 189 FVPEV+++ V Sbjct: 175 FVPEVQEVEAV 185 >gi|57239492|ref|YP_180628.1| hypothetical protein Erum7660 [Ehrlichia ruminantium str. Welgevonden] gi|58579471|ref|YP_197683.1| hypothetical protein ERWE_CDS_08070 [Ehrlichia ruminantium str. Welgevonden] gi|57161571|emb|CAH58499.1| putative NifU-related protein [Ehrlichia ruminantium str. Welgevonden] gi|58418097|emb|CAI27301.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] Length = 185 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 84/190 (44%), Positives = 123/190 (64%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQ EDTPNP TLKF+PG V F+++ AE SP A +F I I SV+FG DF Sbjct: 1 MFIQIEDTPNPNTLKFMPGIPVNNGKIGEFTDSITAESSPFAKALFEIEHIVSVFFGGDF 60 Query: 61 ITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I+V K +W+ L+P +L +IM+ ++ + ++ F D +V Sbjct: 61 ISVTKSSDIEWDVLKPEILTVIMDFLT-----LNPNDSVENNDEEDLQEFFDAKDEEIVS 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE++D+ ++PAVA+DGGDI FKGY +GIVF+ +RGACSGCPSAS TLK G+ N+L ++ Sbjct: 116 KIKELIDDYIKPAVAQDGGDIKFKGYSNGIVFVKLRGACSGCPSASITLKEGIYNMLTYY 175 Query: 180 VPEVKDIRTV 189 +P+++ + +V Sbjct: 176 LPDIQSVESV 185 >gi|58617525|ref|YP_196724.1| hypothetical protein ERGA_CDS_07980 [Ehrlichia ruminantium str. Gardel] gi|58417137|emb|CAI28250.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel] Length = 185 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 82/190 (43%), Positives = 122/190 (64%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQ EDTPNP TLKF+PG V F+++ AE SP A +F I I V+FG DF Sbjct: 1 MFIQIEDTPNPNTLKFMPGIPVNNGKIGEFTDSITAESSPFAKALFEIEHIVGVFFGGDF 60 Query: 61 ITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ++V K +W+ L+P +L +IM+ ++ + ++ F D +V Sbjct: 61 VSVTKSSDIEWDVLKPEILTVIMDFLT-----LNPNDSVENHDEEDLQEFFDAKDEEIVS 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE++D+ ++PAVA+DGGDI FKGY +GIVF+ +RGACSGCPSAS TLK G+ N+L ++ Sbjct: 116 KIKELIDDYIKPAVAQDGGDIKFKGYSNGIVFVKLRGACSGCPSASITLKEGIYNMLTYY 175 Query: 180 VPEVKDIRTV 189 +P+++ + +V Sbjct: 176 LPDIQSVESV 185 >gi|260951229|ref|XP_002619911.1| hypothetical protein CLUG_01070 [Clavispora lusitaniae ATCC 42720] gi|238847483|gb|EEQ36947.1| hypothetical protein CLUG_01070 [Clavispora lusitaniae ATCC 42720] Length = 243 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 74/194 (38%), Positives = 115/194 (59%), Gaps = 11/194 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT +TPN LKF+P +L E F + +EA ISPLA ++FS+ G+ S+ G + Sbjct: 23 LFIQTAETPNENALKFLPSTKLLQENETREFLSGREAVISPLAMKLFSVDGVKSIMLGSN 82 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 FIT+ K D +W L+P + ++ E +G PII + F E D + Sbjct: 83 FITIEKSTDDIEWAVLKPEIFSILTEFLTNGTPIISD------DAQLTNDMQFSEDDDEI 136 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE++ R+RPA+ DGGDI F + + G+V+L ++GAC C S+S TLK G+ ++ Sbjct: 137 VSMIKELIFTRIRPAIQDDGGDIEFVSFEENTGVVYLRLKGACRSCDSSSVTLKNGIESM 196 Query: 176 LNHFVPEVKDIRTV 189 L +++ EV+++R V Sbjct: 197 LKYYIEEVQEVRPV 210 >gi|88658493|ref|YP_507026.1| NifU domain-containing protein [Ehrlichia chaffeensis str. Arkansas] gi|88599950|gb|ABD45419.1| NifU domain protein [Ehrlichia chaffeensis str. Arkansas] Length = 186 Score = 227 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 82/190 (43%), Positives = 125/190 (65%), Gaps = 6/190 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQ +TPNP TLKF+PG + F+++ AE S LA+ +F I + SV+FG DF Sbjct: 1 MFIQIGETPNPNTLKFMPGMPINNGKVSEFADSVAAEGSSLATALFKIEYVKSVFFGGDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ++V K D +W+ L+P +L +IME +++ + + F E D +V Sbjct: 61 VSVTKSDDIEWDVLKPEILTVIMEFLT-----LNSDNATESFDQEELEEFFDEKDIEMVG 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IKE++DN V+PAV +DGGDI FKGY +GIVF+ +RGACSGCPSAS TLK G+ N+L+++ Sbjct: 116 KIKELIDNYVKPAVIQDGGDIKFKGYSNGIVFVKLRGACSGCPSASITLKEGIYNMLSYY 175 Query: 180 VPEVKDIRTV 189 +P+++ + ++ Sbjct: 176 IPDIQGVESI 185 >gi|56417173|ref|YP_154247.1| hypothetical protein AM1146 [Anaplasma marginale str. St. Maries] gi|222475537|ref|YP_002563954.1| hypothetical protein AMF_868 [Anaplasma marginale str. Florida] gi|56388405|gb|AAV86992.1| hypothetical protein AM1146 [Anaplasma marginale str. St. Maries] gi|222419675|gb|ACM49698.1| Conserved hypothetical protein [Anaplasma marginale str. Florida] Length = 194 Score = 227 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 126/191 (65%), Gaps = 4/191 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA-IHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ E TPNP L+F+ + G+ I FS+A A+ S LA +F I G++ V+FG D Sbjct: 6 MFIQIEVTPNPDALRFLLSAEIGAIGSGIEFSDATTAQGSTLARLLFEIQGVSKVFFGGD 65 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F++V K DW+ LRP +L ++ ++F + + D+ F DS VV Sbjct: 66 FVSVTKLPDADWDTLRPEILVVMTDYFSLHNAYSDAAPQAHEESDE--REFFDTKDSEVV 123 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 QR+KE++++ VRPAVA+DGGDI F+GY++G+VF+ +RGACSGCPSA+ TLK GV +L++ Sbjct: 124 QRVKELIEHYVRPAVAQDGGDIKFRGYKEGVVFVHLRGACSGCPSAAVTLKDGVYGMLSY 183 Query: 179 FVPEVKDIRTV 189 +VPEVK + +V Sbjct: 184 YVPEVKAVESV 194 >gi|51473845|ref|YP_067602.1| hypothetical protein RT0659 [Rickettsia typhi str. Wilmington] gi|51460157|gb|AAU04120.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 190 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 83/191 (43%), Positives = 127/191 (66%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTEDTPNP +KF PGQ + ++ + FS E + S LA +F I + SV+FG D Sbjct: 1 MFIQTEDTPNPDAIKFFPGQEISIDQPVFFSELAEVKGRSTLAESLFHINNVKSVFFGSD 60 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K +W+ ++P +L +IM+HFISG P+ + D + ++ + S + Sbjct: 61 FITVTKHAGGNWQVIKPEILMVIMDHFISGFPVFNENTKIDNEKHNI------DMLSEIE 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I E ++ RVRP V +DGGDI++KG+ G+V L++RGAC GCPS++ TLK G+ ++L H Sbjct: 115 KQIIETIETRVRPFVTQDGGDIIYKGFESGVVKLALRGACLGCPSSTITLKNGIESMLRH 174 Query: 179 FVPEVKDIRTV 189 F+PEV++++ V Sbjct: 175 FIPEVQEVQAV 185 >gi|254797154|ref|YP_003081992.1| hira-interacting protein 5 [Neorickettsia risticii str. Illinois] gi|254590399|gb|ACT69761.1| hira-interacting protein 5 [Neorickettsia risticii str. Illinois] Length = 180 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 77/190 (40%), Positives = 122/190 (64%), Gaps = 11/190 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP LKF PG +L G F A +A + L ++ I G++ V G DF Sbjct: 1 MFIQTEHTPNPNVLKFFPGVNILDSGIADFVTASDASGNKLPEMLWEIQGVSGVMLGVDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ++V K + +W+ L+P + +++E+F +G + + + +E V + Sbjct: 61 VSVSKTEDAEWDVLKPQIFSVLVEYFTTGSDFVR----------PVTEDEEVECTDEVSK 110 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +I+E++D +VRP+V DGG++VFKGY+DGIV+L ++GAC+GCPSAS TLK G+ N+L ++ Sbjct: 111 KIREIIDTKVRPSVIEDGGNVVFKGYKDGIVYLKLQGACAGCPSASVTLKDGIENLLQYY 170 Query: 180 VPEVKDIRTV 189 VPEV++++ V Sbjct: 171 VPEVREVQQV 180 >gi|68490038|ref|XP_711140.1| hypothetical protein CaO19.6283 [Candida albicans SC5314] gi|68490075|ref|XP_711122.1| hypothetical protein CaO19.13662 [Candida albicans SC5314] gi|46432400|gb|EAK91883.1| hypothetical protein CaO19.13662 [Candida albicans SC5314] gi|46432419|gb|EAK91901.1| hypothetical protein CaO19.6283 [Candida albicans SC5314] Length = 262 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 76/194 (39%), Positives = 114/194 (58%), Gaps = 5/194 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL-VEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT +TPN LKF+P +L F + +EA SPLA ++FSI GI SV FG D Sbjct: 32 LFIQTSETPNEQALKFLPSIKILQDNQTKEFLSGREAASSPLALKLFSIDGIRSVMFGSD 91 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD-FIESDSAV 117 FIT+ K + +DW L+P + ++ E+ +G PI+ + + + + E D V Sbjct: 92 FITIEKSNNFDWSLLKPEIFSILTEYLTNGTPILLEDNVDEYGNSLLTNDMAINEDDDEV 151 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE++ R+RPA+ DGGDI F + DG V+L ++GAC C S+S TLK G+ ++ Sbjct: 152 VSMIKELIFTRIRPAIQDDGGDIEFVNFNEEDGTVYLRLKGACRSCDSSSVTLKNGIESM 211 Query: 176 LNHFVPEVKDIRTV 189 L H++ EV + + Sbjct: 212 LKHYIEEVNSVEPI 225 >gi|254995338|ref|ZP_05277528.1| hypothetical protein AmarM_05319 [Anaplasma marginale str. Mississippi] gi|255003523|ref|ZP_05278487.1| hypothetical protein AmarPR_04754 [Anaplasma marginale str. Puerto Rico] gi|255004646|ref|ZP_05279447.1| hypothetical protein AmarV_05119 [Anaplasma marginale str. Virginia] Length = 189 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 126/191 (65%), Gaps = 4/191 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA-IHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ E TPNP L+F+ + G+ I FS+A A+ S LA +F I G++ V+FG D Sbjct: 1 MFIQIEVTPNPDALRFLLSAEIGAIGSGIEFSDATTAQGSTLARLLFEIQGVSKVFFGGD 60 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F++V K DW+ LRP +L ++ ++F + + D+ F DS VV Sbjct: 61 FVSVTKLPDADWDTLRPEILVVMTDYFSLHNAYSDAAPQAHEESDE--REFFDTKDSEVV 118 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 QR+KE++++ VRPAVA+DGGDI F+GY++G+VF+ +RGACSGCPSA+ TLK GV +L++ Sbjct: 119 QRVKELIEHYVRPAVAQDGGDIKFRGYKEGVVFVHLRGACSGCPSAAVTLKDGVYGMLSY 178 Query: 179 FVPEVKDIRTV 189 +VPEVK + +V Sbjct: 179 YVPEVKAVESV 189 >gi|68492023|ref|XP_710207.1| hypothetical protein CaO19.3485 [Candida albicans SC5314] gi|46431364|gb|EAK90941.1| hypothetical protein CaO19.3485 [Candida albicans SC5314] Length = 262 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 76/194 (39%), Positives = 114/194 (58%), Gaps = 5/194 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL-VEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT +TPN LKF+P +L F + +EA SPLA ++FSI GI SV FG D Sbjct: 32 LFIQTSETPNEQALKFLPSIKILQDNQTKEFLSGREAASSPLALKLFSIDGIRSVMFGSD 91 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD-FIESDSAV 117 FIT+ K + +DW L+P + ++ E+ +G PI+ + + + + E D V Sbjct: 92 FITIEKSNNFDWSLLKPEIFSILTEYLTNGTPILLEDNVDEYGNSLLTNDMAINEDDDEV 151 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE++ R+RPA+ DGGDI F + DG V+L ++GAC C S+S TLK G+ ++ Sbjct: 152 VSMIKELIFTRIRPAIQDDGGDIEFVNFNEEDGTVYLRLKGACRSCDSSSVTLKNGIESM 211 Query: 176 LNHFVPEVKDIRTV 189 L H++ EV + + Sbjct: 212 LKHYIEEVNSVEPI 225 >gi|88608783|ref|YP_506689.1| NifU-like domain-containing protein [Neorickettsia sennetsu str. Miyayama] gi|88600952|gb|ABD46420.1| NifU-like domain protein [Neorickettsia sennetsu str. Miyayama] Length = 180 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 77/190 (40%), Positives = 120/190 (63%), Gaps = 11/190 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP LKF PG +L G F +A L ++ I G+ V G DF Sbjct: 1 MFIQTEHTPNPNVLKFFPGVKILDSGTADFVTFSDASGHKLPEMLWEIQGVCGVMLGVDF 60 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ++V K + +W+ L+P + G+++E+F +G + + + +E V + Sbjct: 61 VSVSKTEDAEWDVLKPQIFGVLVEYFTTGSDFVR----------PVTEDEEVECTDEVSK 110 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +I+E++D +VRP+V DGG+IVFKGY+DGIV+L ++GAC+GCPSAS TLK G+ N+L ++ Sbjct: 111 KIQEIIDTKVRPSVIEDGGNIVFKGYKDGIVYLKLQGACAGCPSASVTLKDGIENLLQYY 170 Query: 180 VPEVKDIRTV 189 +PEV++++ V Sbjct: 171 IPEVREVQQV 180 >gi|15604511|ref|NP_221029.1| hypothetical protein RP667 [Rickettsia prowazekii str. Madrid E] gi|3861205|emb|CAA15105.1| unknown [Rickettsia prowazekii] gi|292572295|gb|ADE30210.1| NifU-like protein [Rickettsia prowazekii Rp22] Length = 190 Score = 226 bits (578), Expect = 7e-58, Method: Composition-based stats. Identities = 82/191 (42%), Positives = 126/191 (65%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTE+TPNP +KF PGQ + V+ + FS E + S LA +F I + SV+ G D Sbjct: 1 MFIQTEETPNPDAIKFFPGQEISVDQPVFFSELAEVKGRSALAESLFHINNVKSVFLGSD 60 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K +W+ ++P +L +IM+HFISG P+ + D + ++ + S + Sbjct: 61 FITVTKQARGNWQVIKPEILMVIMDHFISGFPVFNENTKIDDEKHNL------DMLSEIE 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I E ++ RVRP V +DGGDI++KG+ G+V L++RGAC GCPS++ TLK G+ ++L H Sbjct: 115 KQIIETIETRVRPFVTQDGGDIIYKGFESGVVKLALRGACLGCPSSTITLKNGIESMLKH 174 Query: 179 FVPEVKDIRTV 189 F+PEV++++ V Sbjct: 175 FIPEVQEVKAV 185 >gi|327299030|ref|XP_003234208.1| NifU domain-containing protein [Trichophyton rubrum CBS 118892] gi|326463102|gb|EGD88555.1| NifU domain-containing protein [Trichophyton rubrum CBS 118892] Length = 288 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 72/194 (37%), Positives = 111/194 (57%), Gaps = 14/194 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 +FI+T+ TPN LKF P VL EG + + + SPLA+++ ++ G Sbjct: 72 IFIETDTTPNADALKFRPNHPVLPEGFPVSFLEYLTPRSTLQPPYPSPLAAKLLNVDGAV 131 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH-----NGGLGDMKLDDMG 106 SV+FG DFITV KD +W H++P + +I E G+ +++ G G + Sbjct: 132 SVFFGSDFITVTKDSDANWAHIKPEIFSLITEAITRGEALVNVVDVRQGKEGAEGAEAEE 191 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + + E D VV I+E+L+ R+RPA+ DGGDI F+G+ +G V L +RGAC C S++ Sbjct: 192 AVRYNEEDEEVVGMIQELLETRIRPAIQEDGGDIEFRGFENGNVLLKLRGACRTCDSSTV 251 Query: 167 TLKYGVANILNHFV 180 TLK G+ ++L H+V Sbjct: 252 TLKNGIESMLMHYV 265 >gi|299469630|emb|CBN76484.1| conserved unknown protein [Ectocarpus siliculosus] Length = 282 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 79/195 (40%), Positives = 109/195 (55%), Gaps = 14/195 (7%) Query: 2 FIQTEDTPNPATLKFIPGQVVLV----EGAIHFSNAKEAEISPLASRIFSIPGIASVYFG 57 FIQTE TPNP +LKF+PG+ VL G + +E SPLA + S+ G+A V+ G Sbjct: 66 FIQTEPTPNPNSLKFLPGRPVLPAEHGTGVYFTPDDREKSQSPLAVALLSLEGVAGVFLG 125 Query: 58 YDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 DFIT+ K D+ W ++P V G IM+ F G P++ + Sbjct: 126 TDFITISKHDEGGWTLMKPVVFGEIMDFFAEGKPVMLAEPVVTDTTILDDDD-------E 178 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVAN 174 VV IKE+L RVRPAV DGGDI ++G+ G V + + G+C GCPS++ TLK GV Sbjct: 179 VVAMIKELLQERVRPAVQEDGGDIFYRGFDPNTGTVNVQLAGSCVGCPSSTVTLKNGVEK 238 Query: 175 ILNHFVPEVKDIRTV 189 +L H++PEV + V Sbjct: 239 MLMHYIPEVTAVNAV 253 >gi|50419691|ref|XP_458373.1| DEHA2C15796p [Debaryomyces hansenii CBS767] gi|49654039|emb|CAG86455.1| DEHA2C15796p [Debaryomyces hansenii] Length = 246 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 72/194 (37%), Positives = 111/194 (57%), Gaps = 11/194 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT +TPN LKF+P ++ E F + +EA SPLA ++FSI GI S+ FG + Sbjct: 29 LFIQTMETPNEHALKFLPSMQIMKENETREFLSGREAACSPLALKLFSIDGIKSIMFGSN 88 Query: 60 FITVGKDQYD--WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 FIT+ K D W L+P + ++ E +G PI++ + + + E D Sbjct: 89 FITIEKANEDLHWSLLKPEIFSILTEFLNNGTPILNE------ESELTDDMEISEDDDET 142 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE++ R+RPA+ DGGDI F + +G V+L ++GAC C S+S TLK G+ ++ Sbjct: 143 VTMIKELIFTRIRPAIQDDGGDIEFVSFAEDNGTVYLRLKGACRSCDSSSVTLKNGIESM 202 Query: 176 LNHFVPEVKDIRTV 189 L +++ EV + V Sbjct: 203 LKYYIEEVTTVEQV 216 >gi|238880174|gb|EEQ43812.1| HIRA-interacting protein 5 [Candida albicans WO-1] Length = 262 Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats. Identities = 76/188 (40%), Positives = 112/188 (59%), Gaps = 5/188 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL-VEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT +TPN LKF+P +L F + +EA SPLA ++FSI GI SV FG D Sbjct: 32 LFIQTSETPNEQALKFLPSIKILQDNQTKEFLSGREAASSPLALKLFSIDGIRSVMFGSD 91 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD-FIESDSAV 117 FIT+ K + +DW L+P + ++ E+ +G PI+ + + + + E D V Sbjct: 92 FITIEKSNNFDWSLLKPEIFSILTEYLTNGTPILLEDNVDEYGNSLLTNDMAINEDDDEV 151 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE++ R+RPA+ DGGDI F + DG V+L ++GAC C S+S TLK G+ ++ Sbjct: 152 VSMIKELIFTRIRPAIQDDGGDIEFVNFNEEDGTVYLRLKGACRSCDSSSVTLKNGIESM 211 Query: 176 LNHFVPEV 183 L H++ EV Sbjct: 212 LKHYIEEV 219 >gi|269959159|ref|YP_003328948.1| NifU domain containing protein [Anaplasma centrale str. Israel] gi|269848990|gb|ACZ49634.1| NifU domain containing protein [Anaplasma centrale str. Israel] Length = 188 Score = 223 bits (569), Expect = 9e-57, Method: Composition-based stats. Identities = 86/192 (44%), Positives = 124/192 (64%), Gaps = 7/192 (3%) Query: 1 MFIQTEDTPNPATLKFIPG-QVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ E+TPNP L+F+ VE + FS+A A S LA +F I G++ V+FG D Sbjct: 1 MFIQIENTPNPDALRFLLSADAGNVESGVEFSDADAARSSALARLLFDIQGVSKVFFGGD 60 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFI-SGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 FI+V K DW+ LRP +L ++ ++ G + D F E D+ V Sbjct: 61 FISVTKLPHADWDTLRPEILVVMTDYLSLRGA----DATPLPAHEDGGEQEFFDEVDTEV 116 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V+R+KE++++ VRPAVA+DGGDI F+GY++G+VF+ +RGACSGCPSA+ TLK GV +L+ Sbjct: 117 VKRVKELIEHYVRPAVAQDGGDIKFRGYKEGVVFVHLRGACSGCPSAAVTLKDGVYGMLS 176 Query: 178 HFVPEVKDIRTV 189 ++VPEVK + +V Sbjct: 177 YYVPEVKAVESV 188 >gi|157804045|ref|YP_001492594.1| NifU-like domain-containing protein [Rickettsia canadensis str. McKiel] gi|157785308|gb|ABV73809.1| NifU-like domain [Rickettsia canadensis str. McKiel] Length = 189 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 119/191 (62%), Gaps = 8/191 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTEDTPNP +KF PGQ + EG I FS E + S LA +F I + SV+FG D Sbjct: 1 MFIQTEDTPNPDAIKFFPGQEINSEGPIFFSELAEVKGKSKLAESLFHINNVKSVFFGSD 60 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K + +W+ ++P +L +IM+HF+SG P+ D ++ IE + Sbjct: 61 FITVTKQPESNWQVIKPEILMVIMDHFVSGFPVFEESTKADNVQHNLDGLLEIEKQIIEI 120 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 RVRP+VA+DGGDI++K + +G+V L +RGAC GCPS++ TLK G+ ++L H Sbjct: 121 IE------TRVRPSVAQDGGDIIYKCFENGVVKLVLRGACLGCPSSTITLKNGIESMLKH 174 Query: 179 FVPEVKDIRTV 189 FVPEV+ + V Sbjct: 175 FVPEVQAVEAV 185 >gi|241959110|ref|XP_002422274.1| nifU-like protein, mitochondrial precursor, putative; protein involved in iron metabolism in mitochondria, putative [Candida dubliniensis CD36] gi|223645619|emb|CAX40278.1| nifU-like protein, mitochondrial precursor, putative [Candida dubliniensis CD36] Length = 302 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 77/188 (40%), Positives = 113/188 (60%), Gaps = 5/188 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL-VEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT +TPN LKF+P +L F + +EA SPLA ++FSI GI SV FG D Sbjct: 77 LFIQTSETPNEQALKFLPSIKILQDNQTKEFLSGREAASSPLALKLFSIDGIRSVMFGSD 136 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD-FIESDSAV 117 FIT+ K + +DW L+P + ++ E+ +G PI+ G+ + + + E D V Sbjct: 137 FITIEKLNNFDWSLLKPEIFSILTEYLTNGTPILLEDGVDEDGNSLLTNDMAINEDDDEV 196 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE++ R+RPA+ DGGDI F + DG V+L ++GAC C S+S TLK G+ ++ Sbjct: 197 VSMIKELIFTRIRPAIQDDGGDIEFVNFNEEDGTVYLRLKGACRSCDSSSVTLKNGIESM 256 Query: 176 LNHFVPEV 183 L H++ EV Sbjct: 257 LKHYIEEV 264 >gi|241761631|ref|ZP_04759718.1| Scaffold protein Nfu/NifU [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753996|ref|YP_003226889.1| Scaffold protein Nfu/NifU [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|241373939|gb|EER63472.1| Scaffold protein Nfu/NifU [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258553359|gb|ACV76305.1| Scaffold protein Nfu/NifU [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 183 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 83/190 (43%), Positives = 124/190 (65%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M I+TE TPNPATLKF+ + V+ + +F N +EA SPLA +F + + +V++G DF Sbjct: 1 MLIETEKTPNPATLKFLLHRPVMERESRYFVNKEEAADSPLAVALFDLQHVTAVFYGRDF 60 Query: 61 ITVGKDQYD-WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I+V D W +L ++ +I +HF + P++ + + + V+ Sbjct: 61 ISVTLDSPSLWSNLESKIIMIISDHFDNDIPLLVENS-------EKNETKDHDEEDDVIL 113 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IK+++D+RVRPAVARDGGDIVF+ + DGIV+LSMRGAC+GCPS+ TLK GV +L HF Sbjct: 114 QIKDLIDSRVRPAVARDGGDIVFQKFEDGIVYLSMRGACAGCPSSVATLKQGVETLLKHF 173 Query: 180 VPEVKDIRTV 189 VPE+K++R + Sbjct: 174 VPEIKEVRAI 183 >gi|150864668|ref|XP_001383601.2| hypothetical protein PICST_82838 [Scheffersomyces stipitis CBS 6054] gi|149385924|gb|ABN65572.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 254 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 78/194 (40%), Positives = 117/194 (60%), Gaps = 11/194 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT +TPN + LKF+P +L E I F + +EA SPLA ++FSI GI S+ FG + Sbjct: 33 LFIQTVETPNESALKFLPSIKLLEENETIEFLSGREAARSPLAVKLFSIDGIKSIMFGSN 92 Query: 60 FITVGKDQYD--WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 FIT+ K+ D W L+P + ++ E+ +G PI+ +G + + + D V Sbjct: 93 FITIEKNSNDLHWSLLKPEIFSILTEYLTNGTPILIDGESLSKDM------EINDDDDEV 146 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE++ R+RPA+ DGGDI F + DG VFL ++GAC C S+S TLK G+ ++ Sbjct: 147 VSIIKELIFTRIRPAIQDDGGDIEFVSFREEDGTVFLRLKGACRSCDSSSVTLKNGIESM 206 Query: 176 LNHFVPEVKDIRTV 189 L +++ EVK + V Sbjct: 207 LKYYIEEVKAVEQV 220 >gi|283856470|ref|YP_163150.2| scaffold protein Nfu/NifU [Zymomonas mobilis subsp. mobilis ZM4] gi|283775474|gb|AAV90039.2| Scaffold protein Nfu/NifU [Zymomonas mobilis subsp. mobilis ZM4] Length = 183 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 83/190 (43%), Positives = 124/190 (65%), Gaps = 8/190 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M I+TE TPNPATLKF+ + V+ + +F N +EA SPLA +F + + +V++G DF Sbjct: 1 MLIETEKTPNPATLKFLLHRPVMERESRYFVNKEEAADSPLAVALFDLQHVTAVFYGRDF 60 Query: 61 ITVGKDQYD-WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I+V D W +L ++ +I +HF + P++ + + + V+ Sbjct: 61 ISVTLDSPSLWSNLESKIIMIISDHFDNDIPLLVENF-------EKNEIKDHDEEDDVIL 113 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IK+++D+RVRPAVARDGGDIVF+ + DGIV+LSMRGAC+GCPS+ TLK GV +L HF Sbjct: 114 QIKDLIDSRVRPAVARDGGDIVFQKFEDGIVYLSMRGACAGCPSSVATLKQGVETLLKHF 173 Query: 180 VPEVKDIRTV 189 VPE+K++R + Sbjct: 174 VPEIKEVRAI 183 >gi|67458659|ref|YP_246283.1| NifU-like domain-containing protein [Rickettsia felis URRWXCal2] gi|67004192|gb|AAY61118.1| NifU-like domain [Rickettsia felis URRWXCal2] Length = 190 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 81/181 (44%), Positives = 121/181 (66%), Gaps = 8/181 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTEDTPNP +KF PGQ + E + FS+ E + S LA +F I + SV+FG D Sbjct: 1 MFIQTEDTPNPDAIKFFPGQEISSEQPVFFSDISEVKGRSKLAESLFYINNVKSVFFGSD 60 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K + +W+ ++P VL +IM+HF+SG P+ D ++ + S + Sbjct: 61 FITVTKQAESNWQVIKPEVLMVIMDHFVSGFPVFEESTKADNVNHNL------DGLSEIE 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I E+++ RVRP+VA+DGGDI++KG+ +G+V L++RGAC GCPS++ TLK G+ ++L H Sbjct: 115 KQIVEIIETRVRPSVAQDGGDIIYKGFENGVVKLALRGACLGCPSSTITLKNGIESMLKH 174 Query: 179 F 179 F Sbjct: 175 F 175 >gi|134114121|ref|XP_774308.1| hypothetical protein CNBG2890 [Cryptococcus neoformans var. neoformans B-3501A] gi|50256943|gb|EAL19661.1| hypothetical protein CNBG2890 [Cryptococcus neoformans var. neoformans B-3501A] Length = 309 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 87/192 (45%), Positives = 120/192 (62%), Gaps = 7/192 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPN A+LKFIPG V A F + + A SPLA+R+ +I GI V+FG DF Sbjct: 80 MFIQTETTPNEASLKFIPGVQVTNGAAHEFLDLRSALQSPLATRLLTIDGITGVFFGPDF 139 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +T KD Y W L+P V ++MEHF SG + G D +++DS +V Sbjct: 140 VTCSKDDSYSWSILKPEVFAVLMEHFSSGASLFKEGSGESQAED----TRILDTDSEIVG 195 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ RVRPA+ DGGDI ++G+ + G+V L ++G+C GC S+S TLK G+ +L Sbjct: 196 MIKELLETRVRPAIMEDGGDIEYRGFDEDTGLVKLKLKGSCRGCSSSSVTLKNGIERMLT 255 Query: 178 HFVPEVKDIRTV 189 H+VPEV+ + V Sbjct: 256 HYVPEVQSVEQV 267 >gi|58269446|ref|XP_571879.1| iron ion homeostasis-related protein [Cryptococcus neoformans var. neoformans JEC21] gi|57228115|gb|AAW44572.1| iron ion homeostasis-related protein, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 309 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 87/192 (45%), Positives = 120/192 (62%), Gaps = 7/192 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPN A+LKFIPG V A F + + A SPLA+R+ +I GI V+FG DF Sbjct: 80 MFIQTETTPNEASLKFIPGVQVTNGAAHEFLDLRSALQSPLATRLLTIDGITGVFFGPDF 139 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +T KD Y W L+P V ++MEHF SG + G D +++DS +V Sbjct: 140 VTCSKDDSYSWSILKPEVFAVLMEHFSSGASLFKEGSGESQAED----TRILDTDSEIVG 195 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ RVRPA+ DGGDI ++G+ + G+V L ++G+C GC S+S TLK G+ +L Sbjct: 196 MIKELLETRVRPAIMEDGGDIEYRGFDEDTGLVKLKLKGSCRGCSSSSVTLKNGIERMLT 255 Query: 178 HFVPEVKDIRTV 189 H+VPEV+ + V Sbjct: 256 HYVPEVQSVEQV 267 >gi|224009450|ref|XP_002293683.1| nifu-like protein [Thalassiosira pseudonana CCMP1335] gi|220970355|gb|EED88692.1| nifu-like protein [Thalassiosira pseudonana CCMP1335] Length = 210 Score = 220 bits (561), Expect = 8e-56, Method: Composition-based stats. Identities = 80/196 (40%), Positives = 116/196 (59%), Gaps = 15/196 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHF----SNAKEAEISPLASRIFSIP-GIASVY 55 +FIQT TPNP +LKFIP + F + SPLA ++F++ GI S+Y Sbjct: 15 LFIQTATTPNPESLKFIPNGRLNNTDTAGFYVTRKDHTLIARSPLAKQLFNLDIGIKSLY 74 Query: 56 FGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESD 114 GYDFITV K + W+HL+ P+ G IM+ + SG P + ++ +E D Sbjct: 75 LGYDFITVTKFAEAHWQHLQTPIFGAIMDFYASGKPALRGE-------PEITDTTILEDD 127 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGV 172 VV IKE+L++R+RPAV DGGDI + G+ + G+V + + G+C GCPS+S TLK GV Sbjct: 128 DEVVAMIKELLESRIRPAVQEDGGDIRYVGFEEETGLVTVQLAGSCVGCPSSSVTLKNGV 187 Query: 173 ANILNHFVPEVKDIRT 188 N+L H++PEV + + Sbjct: 188 ENMLMHYIPEVTAVIS 203 >gi|321261141|ref|XP_003195290.1| iron homeostasis-related protein [Cryptococcus gattii WM276] gi|317461763|gb|ADV23503.1| Iron homeostasis-related protein, putative [Cryptococcus gattii WM276] Length = 309 Score = 220 bits (561), Expect = 8e-56, Method: Composition-based stats. Identities = 88/192 (45%), Positives = 120/192 (62%), Gaps = 7/192 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPN A+LKFIPG V A F + + A SPLA+R+ +I GI V+FG DF Sbjct: 80 MFIQTETTPNEASLKFIPGVQVTNGAAHEFLDLRSALQSPLATRLLTIDGITGVFFGPDF 139 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +T KD Y W L+P V ++MEHF SG + G D +++DS +V Sbjct: 140 VTCSKDDSYSWSILKPEVFAVLMEHFSSGASLFKEGSGESQAED----TRILDTDSEIVG 195 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+L+ RVRPA+ DGGDI ++G+ + GIV L ++G+C GC S+S TLK G+ +L Sbjct: 196 MIKELLETRVRPAIMEDGGDIEYRGFDEVTGIVKLKLKGSCRGCSSSSVTLKNGIERMLT 255 Query: 178 HFVPEVKDIRTV 189 H+VPEV+ + V Sbjct: 256 HYVPEVQSVEQV 267 >gi|239946652|ref|ZP_04698405.1| type Fe-S cluster assembly protein NFU [Rickettsia endosymbiont of Ixodes scapularis] gi|241563470|ref|XP_002401717.1| conserved hypothetical protein [Ixodes scapularis] gi|215501909|gb|EEC11403.1| conserved hypothetical protein [Ixodes scapularis] gi|239920928|gb|EER20952.1| type Fe-S cluster assembly protein NFU [Rickettsia endosymbiont of Ixodes scapularis] Length = 190 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 78/181 (43%), Positives = 119/181 (65%), Gaps = 8/181 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTEDTPNP +KF PGQ ++ + + FS E + S LA +F I + SV+FG D Sbjct: 1 MFIQTEDTPNPDAIKFFPGQEIISDQPVFFSELAEVKGRSKLAESLFHINNVKSVFFGSD 60 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K + +W+ ++P +L +IM+HF++G P+ + + S + Sbjct: 61 FITVTKQAEGNWQVIKPEILMVIMDHFVAGFPVFEESTKAGNVNHSL------DGLSEIE 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I E+++ RVRP+VA+DGGDI++KG+ +GIV L++RGAC GCPS++ TLK G+ ++L H Sbjct: 115 KQIVEIIETRVRPSVAQDGGDIIYKGFENGIVKLALRGACLGCPSSTITLKNGIESMLKH 174 Query: 179 F 179 F Sbjct: 175 F 175 >gi|323451223|gb|EGB07101.1| hypothetical protein AURANDRAFT_54041 [Aureococcus anophagefferens] Length = 232 Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 79/198 (39%), Positives = 114/198 (57%), Gaps = 15/198 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE-----GAIHFSNAK-EAEISPLASRIFSIPGIASV 54 +FIQ E TPNP +LKF+P Q VL E HF E SPLA ++F+I G+ + Sbjct: 18 VFIQVEKTPNPFSLKFVPSQAVLGEEHQDKSGFHFHRGDTEYLRSPLAKKLFAIDGVTGI 77 Query: 55 YFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIES 113 + DF+TV K++ W ++P V G IM+ + G P + + + Sbjct: 78 FLARDFVTVSKNEDGAWATIKPHVFGHIMDFYAEGLPAVEDALPA------ASDTLITDD 131 Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYG 171 DS VV IKE+++ R+RPAV DGGDI F+G+ + G+V + + G+C GCPS+S TL+ G Sbjct: 132 DSEVVAMIKELVEARIRPAVQEDGGDIFFRGFDEATGVVKVELAGSCVGCPSSSVTLRNG 191 Query: 172 VANILNHFVPEVKDIRTV 189 V N+L H++ EVK I V Sbjct: 192 VENMLMHYIAEVKAIENV 209 >gi|295673142|ref|XP_002797117.1| LiPid Depleted family member [Paracoccidioides brasiliensis Pb01] gi|226282489|gb|EEH38055.1| LiPid Depleted family member [Paracoccidioides brasiliensis Pb01] Length = 317 Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 77/202 (38%), Positives = 115/202 (56%), Gaps = 16/202 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE----GAIHFSNAKEA----EISPLASRIFSIPGIA 52 +FIQTE+TPN LKFIP VL E + + + + SPLAS++ ++ G++ Sbjct: 82 IFIQTENTPNADALKFIPNHSVLPENFPTTFLEYLSPRSTLAPPYPSPLASKLLNVDGVS 141 Query: 53 SVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIH-NGGLGDMKLDDMGSGDF 110 +V++G DFIT+ K +W H++P V +I E +GDPI+ + + + S + Sbjct: 142 AVFYGPDFITITKAGDANWAHIKPEVFSLITEAVTAGDPIVTISEAGAGSQAQEEDSLSY 201 Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 E D VV IKE+L+ R+RPA+ DGGDI F+G+ DGIV L +RGAC C S++ K Sbjct: 202 NEDDDEVVGMIKELLETRIRPAIQEDGGDIEFRGFDDGIVNLKLRGACRTCDSST---KL 258 Query: 171 GVANILNHF---VPEVKDIRTV 189 V + H + EVK + V Sbjct: 259 FVPTLRGHAEISIEEVKGVNQV 280 >gi|256419768|ref|YP_003120421.1| nitrogen-fixing NifU domain protein [Chitinophaga pinensis DSM 2588] gi|256034676|gb|ACU58220.1| nitrogen-fixing NifU domain protein [Chitinophaga pinensis DSM 2588] Length = 198 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 72/189 (38%), Positives = 108/189 (57%), Gaps = 3/189 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 + I TE TPNP T+KF+ +++ I F + A+ SPLA +FS P I V+ +F Sbjct: 9 ISIYTEMTPNPETMKFVANKLLYPGKHIDFPDEASAKPSPLAVELFSFPFIRGVFIMANF 68 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 IT+ K DW + P + + E+ P+I+ + K + + D+ VV+ Sbjct: 69 ITLTKTPDTDWNDIIPTIKAFLKEYLEDNRPVINEEEIVVTKA--AATNEVSADDTDVVK 126 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 RIKE+L+N V+PAV DGG I FK Y DG V L ++G+CSGCPS+ TLK G+ ++ Sbjct: 127 RIKELLENYVKPAVEMDGGAIQFKDYDDGTVTLMLQGSCSGCPSSMITLKAGIEGMMKRM 186 Query: 180 VPEVKDIRT 188 +PEVK++ Sbjct: 187 IPEVKEVVA 195 >gi|254455619|ref|ZP_05069048.1| nitrogen-fixing NifU domain protein [Candidatus Pelagibacter sp. HTCC7211] gi|207082621|gb|EDZ60047.1| nitrogen-fixing NifU domain protein [Candidatus Pelagibacter sp. HTCC7211] Length = 179 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 73/190 (38%), Positives = 117/190 (61%), Gaps = 12/190 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MF+QTE TPNP +LKF+PG+ V G K+ + L I SI G+ ++ G DF Sbjct: 1 MFVQTEVTPNPNSLKFLPGKKVSNSGPFEI-TKKDGIKNDLVRNILSINGVEGIFLGEDF 59 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I+V K D+ +W+ ++ V+ +I + + G + D + ++ + Q Sbjct: 60 ISVNKNDEINWDEIKHIVISLINDFYSDGKEFVI----------DEDAEQSDDNLDEIEQ 109 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +I ++LD ++RPAVARDGGDI FK ++DG+V + ++G+CSGCPS++ TLK GV N+L H+ Sbjct: 110 KIVKILDQKIRPAVARDGGDIKFKEFKDGVVKVQLQGSCSGCPSSTMTLKQGVQNLLCHY 169 Query: 180 VPEVKDIRTV 189 +PEVK++ + Sbjct: 170 LPEVKEVIAI 179 >gi|221104801|ref|XP_002157169.1| PREDICTED: similar to HIRA interacting protein 5 [Hydra magnipapillata] Length = 267 Score = 216 bits (552), Expect = 8e-55, Method: Composition-based stats. Identities = 83/194 (42%), Positives = 115/194 (59%), Gaps = 12/194 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFI+ +DTPNP +LKFIPG VL G + F SPLA ++F I G+ S++FG DF Sbjct: 59 MFIRVQDTPNPNSLKFIPGCKVLESGTVDFPTPSHGYRSPLARQLFRIKGVRSIFFGKDF 118 Query: 61 ITVGK---DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 IT+ K D W L+P + +IM+ F S P++ + + E D+ Sbjct: 119 ITISKSDDDDVSWVLLKPDIYAVIMDFFASNLPVLTDDVPAQDTIAA-------EDDNET 171 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE+LD R+RP V DGGDI+FKG+ GIV L ++G+CS CPS+S TLK GV N+ Sbjct: 172 VLLIKELLDTRIRPTVQEDGGDIIFKGFDSVSGIVKLKLQGSCSSCPSSSVTLKNGVQNM 231 Query: 176 LNHFVPEVKDIRTV 189 + ++PEV + V Sbjct: 232 MQFYIPEVTGVEEV 245 >gi|76155328|gb|AAX26597.2| SJCHGC03039 protein [Schistosoma japonicum] Length = 222 Score = 216 bits (552), Expect = 8e-55, Method: Composition-based stats. Identities = 80/177 (45%), Positives = 112/177 (63%), Gaps = 8/177 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +FIQ ++TPNP +LK+ PGQ VL G F + K+A SPLA ++F I G+ V+FG DF Sbjct: 53 LFIQAQETPNPNSLKYFPGQAVLGSGTRDFPSRKQAGSSPLARQLFRIEGVEQVFFGPDF 112 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 IT+ K + ++W ++P V IM+ + SG P+I + S E D V Sbjct: 113 ITITKNNDFEWAVIKPDVYATIMDFYSSGQPVIDEEKSQE-------SDKPCEVDDETVL 165 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+LD R+RP V DGGDI++KG++DGIV L ++G+CS CPS+ TLK GV N+L Sbjct: 166 MIKELLDTRIRPTVQEDGGDIIYKGFKDGIVLLKLQGSCSSCPSSVVTLKNGVQNML 222 >gi|116781621|gb|ABK22181.1| unknown [Picea sitchensis] Length = 181 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 72/169 (42%), Positives = 101/169 (59%), Gaps = 8/169 (4%) Query: 23 LVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK-DQYDWEHLRPPVLGMI 81 + G+ F NA+ A SPLA ++ I G+A ++FG DFITV K ++ W+ L+P + I Sbjct: 1 MEVGSADFPNARVAMGSPLAKSLYGIDGVARIFFGSDFITVTKSEEVSWDILKPEIFAAI 60 Query: 82 MEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIV 141 M+ + SG P+ + G E D V IKE+L+ R+RPAV DGGDI Sbjct: 61 MDFYSSGQPLFLDSKSG-----APTDTAINEDDDETVAMIKELLETRIRPAVQDDGGDIE 115 Query: 142 FKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 + G+ G+V L M+GACSGCPS+S TLK G+ N+L H+VPEVK + Sbjct: 116 YCGFDPETGVVKLKMQGACSGCPSSSLTLKSGIENMLMHYVPEVKGVEQ 164 >gi|255726880|ref|XP_002548366.1| hypothetical protein CTRG_02663 [Candida tropicalis MYA-3404] gi|240134290|gb|EER33845.1| hypothetical protein CTRG_02663 [Candida tropicalis MYA-3404] Length = 261 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 75/193 (38%), Positives = 112/193 (58%), Gaps = 7/193 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT +TPN LKF+P +L E F + +EA SPLA ++FSI GI SV +G D Sbjct: 32 LFIQTSETPNEQALKFLPSIQILGENQTKEFLSGREAACSPLAVKLFSIDGIKSVMYGSD 91 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FIT+ K + W L+P + ++ E+ +G PI+ + DDM + VV Sbjct: 92 FITIEKSENIAWPLLKPEIFSILTEYLTNGSPILLENDKNGIITDDMAFDEDD---DEVV 148 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE++ R+RPA+ DGGDI F + +G V+L ++GAC C S+S TLK G+ ++L Sbjct: 149 SMIKELIFTRIRPAIQDDGGDIEFIKFEPDNGTVYLKLKGACRSCDSSSVTLKNGIESML 208 Query: 177 NHFVPEVKDIRTV 189 H++ EV + + Sbjct: 209 KHYIEEVNSVEPI 221 >gi|190345080|gb|EDK36900.2| hypothetical protein PGUG_00997 [Meyerozyma guilliermondii ATCC 6260] Length = 236 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 72/185 (38%), Positives = 110/185 (59%), Gaps = 11/185 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT DTPN LKF+P +L E + F + +EA SPLA ++FS+ GI SV FG + Sbjct: 27 LFIQTADTPNEHALKFLPSMSILKENETLEFLSGREAARSPLAVKLFSVDGIKSVMFGSN 86 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 FIT+ K + W ++P + ++ EH +G P+I++ + + E D V Sbjct: 87 FITIEKSANSNQWAVMKPEIFSILTEHLTTGAPVINDEY------ELSNDMEINEDDDEV 140 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE++ R+RPA+ DGGDI F + + G V+L ++GAC C S+S TLK G+ ++ Sbjct: 141 VAMIKELIFTRIRPAIQEDGGDIEFAKFDEDSGTVYLKLKGACRSCESSSVTLKNGIESM 200 Query: 176 LNHFV 180 L H++ Sbjct: 201 LKHYI 205 >gi|238650984|ref|YP_002916840.1| hypothetical protein RPR_06295 [Rickettsia peacockii str. Rustic] gi|238625082|gb|ACR47788.1| hypothetical protein RPR_06295 [Rickettsia peacockii str. Rustic] Length = 190 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 78/181 (43%), Positives = 119/181 (65%), Gaps = 8/181 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTEDTPNP + F PGQ + + + FS E + S LA +F I + SV+FG D Sbjct: 1 MFIQTEDTPNPDAITFFPGQEISSDQPVFFSELAEVKGRSKLAESLFYINNVKSVFFGSD 60 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K + +W+ ++P +L +IM+HF+SG P+ D ++ + S + Sbjct: 61 FITVTKQAEGNWQVIKPEILMVIMDHFVSGLPVFEENTKADNVNHNL------DGLSEIE 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I E+++ RVRP+VA+DGGDI++KG+ +G+V L++RGAC GCPS++ TLK G+ ++L H Sbjct: 115 KQIVEIIETRVRPSVAQDGGDIIYKGFENGVVKLALRGACLGCPSSTITLKNGIESMLKH 174 Query: 179 F 179 F Sbjct: 175 F 175 >gi|146423384|ref|XP_001487621.1| hypothetical protein PGUG_00997 [Meyerozyma guilliermondii ATCC 6260] Length = 236 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 72/185 (38%), Positives = 110/185 (59%), Gaps = 11/185 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FIQT DTPN LKF+P +L E + F + +EA SPLA ++FS+ GI SV FG + Sbjct: 27 LFIQTADTPNEHALKFLPSMSILKENETLEFLSGREAARSPLAVKLFSVDGIKSVMFGSN 86 Query: 60 FITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 FIT+ K + W ++P + ++ EH +G P+I++ + + E D V Sbjct: 87 FITIEKLANSNQWAVMKPEIFLILTEHLTTGAPVINDEY------ELSNDMEINEDDDEV 140 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANI 175 V IKE++ R+RPA+ DGGDI F + + G V+L ++GAC C S+S TLK G+ ++ Sbjct: 141 VAMIKELIFTRIRPAIQEDGGDIEFAKFDEDSGTVYLKLKGACRSCESSSVTLKNGIESM 200 Query: 176 LNHFV 180 L H++ Sbjct: 201 LKHYI 205 >gi|15892941|ref|NP_360655.1| hypothetical protein RC1018 [Rickettsia conorii str. Malish 7] gi|15620134|gb|AAL03556.1| unknown [Rickettsia conorii str. Malish 7] Length = 190 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 78/181 (43%), Positives = 119/181 (65%), Gaps = 8/181 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTEDTPNP + F PGQ + + + FS E + S LA +F I + SV+FG D Sbjct: 1 MFIQTEDTPNPDAITFFPGQEISSDQPVFFSELAEVKGRSKLAESLFYINNVKSVFFGSD 60 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K + +W+ ++P +L +IM+HF+SG P+ D ++ + S + Sbjct: 61 FITVTKQAEGNWQVIKPEILMVIMDHFVSGFPVFEENTKADNVNHNL------DGLSEIE 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I E+++ RVRP+VA+DGGDI++KG+ +G+V L++RGAC GCPS++ TLK G+ ++L H Sbjct: 115 KQIVEIIETRVRPSVAQDGGDIIYKGFENGVVKLALRGACLGCPSSTITLKNGIESMLKH 174 Query: 179 F 179 F Sbjct: 175 F 175 >gi|71083083|ref|YP_265802.1| NifU-like domain-containing protein [Candidatus Pelagibacter ubique HTCC1062] gi|91762490|ref|ZP_01264455.1| NifU-like domain protein [Candidatus Pelagibacter ubique HTCC1002] gi|71062196|gb|AAZ21199.1| NifU-like domain protein [Candidatus Pelagibacter ubique HTCC1062] gi|91718292|gb|EAS84942.1| NifU-like domain protein [Candidatus Pelagibacter ubique HTCC1002] Length = 180 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 72/190 (37%), Positives = 121/190 (63%), Gaps = 11/190 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP +LKF+PG+ V G+ +E + + L I SI G+ V+ G DF Sbjct: 1 MFIQTEVTPNPNSLKFLPGKTVSNNGSFEVIKKEETD-NELVRNILSINGVTGVFLGEDF 59 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I++ K ++ +WE ++ + +I + + +G + + + G+ E + + + Sbjct: 60 ISINKNEEVNWEDIKHIAISLINDFYSTGKEFV---------IANELLGEKKEEHTEIEK 110 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +I +L++++RPAVA+DGGDI FK ++DGIV + ++G+CSGCPS++ TLK GV N+L H+ Sbjct: 111 QIISILESKIRPAVAKDGGDIKFKEFKDGIVKVELQGSCSGCPSSTMTLKQGVQNLLCHY 170 Query: 180 VPEVKDIRTV 189 +PEVK++ + Sbjct: 171 LPEVKEVVAI 180 >gi|303274691|ref|XP_003056661.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461013|gb|EEH58306.1| predicted protein [Micromonas pusilla CCMP1545] Length = 190 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 76/178 (42%), Positives = 116/178 (65%), Gaps = 9/178 (5%) Query: 15 KFIPGQVVLVEGA-IHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKDQY-DWEH 72 F+PG+ V + ++F+ +EA SPLA ++F+I G+ SV+FG D++TV K++ +W Sbjct: 1 MFMPGKPVNPDAPPLNFATPREAMASPLAKKLFAIDGVVSVFFGADYVTVTKNETHEWGV 60 Query: 73 LRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPA 132 L+P V +M+H+ SGDP++ + + D +V IKE+L+ R+RPA Sbjct: 61 LKPEVFAAVMDHYASGDPLVSDDAELVAAGTA-----IADDDDEIVAMIKELLETRIRPA 115 Query: 133 VARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 VA DGGDIV+KG+ + G+V + MRGAC GCPS+S TLK G+ N+L H+VPEVK++ Sbjct: 116 VAEDGGDIVYKGWDESTGVVTVQMRGACDGCPSSSVTLKSGIENMLRHYVPEVKEVVQ 173 >gi|34581359|ref|ZP_00142839.1| hypothetical protein [Rickettsia sibirica 246] gi|229587020|ref|YP_002845521.1| NifU-like protein [Rickettsia africae ESF-5] gi|28262744|gb|EAA26248.1| unknown [Rickettsia sibirica 246] gi|228022070|gb|ACP53778.1| NifU-like protein [Rickettsia africae ESF-5] Length = 190 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 78/181 (43%), Positives = 119/181 (65%), Gaps = 8/181 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTEDTPNP + F PGQ + + + FS E + S LA +F I + SV+FG D Sbjct: 1 MFIQTEDTPNPDAITFFPGQEISSDQPVFFSELAEVKGRSKLAESLFYINNVKSVFFGSD 60 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K + +W+ ++P +L +IM+HF+SG P+ D ++ + S + Sbjct: 61 FITVTKQAEGNWQVIKPEILMVIMDHFVSGFPVFEENTKADNVNHNL------DGLSEIE 114 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I E+++ RVRP+VA+DGGDI++KG+ +G+V L++RGAC GCPS++ TLK G+ ++L H Sbjct: 115 KQIVEIIETRVRPSVAQDGGDIIYKGFENGVVKLALRGACLGCPSSTITLKNGIESMLKH 174 Query: 179 F 179 F Sbjct: 175 F 175 >gi|110636788|ref|YP_676995.1| thioredoxin-like protein [Cytophaga hutchinsonii ATCC 33406] gi|110279469|gb|ABG57655.1| thioredoxin-related protein [Cytophaga hutchinsonii ATCC 33406] Length = 191 Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 68/187 (36%), Positives = 105/187 (56%), Gaps = 7/187 (3%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + TE TPNP TLKFI + ++ EG++ F A AE PL +F + V+ +FIT Sbjct: 8 VYTEATPNPNTLKFITDKTLVEEGSVDFPMASSAESCPLVLDLFRFDFVKRVFMAANFIT 67 Query: 63 VGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 V K + +WE + + +I + G P+ + + +E + VV +I Sbjct: 68 VTKSEGMEWEEVSGMIKSLIKGYIEEGKPLFKE------THKPLSNTAPVEGEPEVVTKI 121 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP 181 K VLD +RPAV +DGG I F+ + DG+V + ++G+CSGCPS++ TLK G+ N+L VP Sbjct: 122 KVVLDEYIRPAVEQDGGAINFESFVDGVVKVQLQGSCSGCPSSTVTLKSGIENLLKRMVP 181 Query: 182 EVKDIRT 188 EV ++ Sbjct: 182 EVTEVVA 188 >gi|157964815|ref|YP_001499639.1| NifU-like protein [Rickettsia massiliae MTU5] gi|157844591|gb|ABV85092.1| NifU-like protein [Rickettsia massiliae MTU5] Length = 191 Score = 214 bits (545), Expect = 6e-54, Method: Composition-based stats. Identities = 77/181 (42%), Positives = 118/181 (65%), Gaps = 8/181 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQT DTPNP + F PGQ + + + FS E + S LA +F I + SV+FG D Sbjct: 2 MFIQTADTPNPDAITFFPGQEISSDQPVFFSELAEVQGRSKLAESLFHINNVKSVFFGSD 61 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K + +W+ ++P +L +IM+HF+SG P+ D ++ + S + Sbjct: 62 FITVTKQAEGNWQVIKPEILMVIMDHFVSGFPVFEENTKADNVNHNL------DGLSEIE 115 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++I E+++ RVRP+VA+DGGDI++KG+ +G+V L++RGAC GCPS++ TLK G+ ++L H Sbjct: 116 KQIVEIIETRVRPSVAQDGGDIIYKGFENGVVKLALRGACLGCPSSTITLKNGIESMLKH 175 Query: 179 F 179 F Sbjct: 176 F 176 >gi|115376684|ref|ZP_01463912.1| NifU domain protein [Stigmatella aurantiaca DW4/3-1] gi|310823922|ref|YP_003956280.1| NIF system FeS cluster assembly, NifU family protein [Stigmatella aurantiaca DW4/3-1] gi|115366301|gb|EAU65308.1| NifU domain protein [Stigmatella aurantiaca DW4/3-1] gi|309396994|gb|ADO74453.1| NIF system FeS cluster assembly, NifU family protein [Stigmatella aurantiaca DW4/3-1] Length = 187 Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats. Identities = 74/189 (39%), Positives = 118/189 (62%), Gaps = 8/189 (4%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYDFI 61 IQ E TPNP+TLK++ + +L GA++F+ +EA + SPLA ++ I G+ +V G +F+ Sbjct: 5 IQLEWTPNPSTLKYVVDRRLLSSGAVNFTRREEAEQKSPLARKLMDIQGVTAVMLGLNFV 64 Query: 62 TVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 TV K D+ +W+ L V+ + H S +P++ + + E S+V QR Sbjct: 65 TVTKGDEGEWDELNDAVMSTLDAHLGSDEPVVDEAAVAAARAAPA------EGGSSVEQR 118 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I+E+LD +RPAVA+DGGDI Y +G+V+L M+G+CSGCPS++ TLK G+ L + Sbjct: 119 IREILDAEIRPAVAQDGGDITLDRYENGVVYLHMQGSCSGCPSSTATLKMGIEGRLREAI 178 Query: 181 PEVKDIRTV 189 PEV ++ ++ Sbjct: 179 PEVTEVVSI 187 >gi|296448206|ref|ZP_06890103.1| Scaffold protein Nfu/NifU [Methylosinus trichosporium OB3b] gi|296254290|gb|EFH01420.1| Scaffold protein Nfu/NifU [Methylosinus trichosporium OB3b] Length = 183 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 100/189 (52%), Positives = 134/189 (70%), Gaps = 6/189 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNP+TLKF+PG+ VL GA F +A+ A SPLA + +I G+ +V FG DF Sbjct: 1 MFIQTESTPNPSTLKFLPGRPVLAAGAREFRDAQAAAASPLAGALLAINGVEAVMFGPDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ++V K +W HL+P VLG IMEHF SG PI+ + G + + F +D+ +V Sbjct: 61 VSVTKADAEWAHLKPAVLGTIMEHFTSGAPIVLDEG------EAAPAEFFDPADAELVAT 114 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 +KE+L RV PAVARDGGDI F+G+RDGIV+L+M+G+CSGCPS+S TLK GV N+L H+V Sbjct: 115 LKELLVTRVTPAVARDGGDIAFRGFRDGIVYLAMKGSCSGCPSSSATLKNGVENLLRHYV 174 Query: 181 PEVKDIRTV 189 P+V+ + V Sbjct: 175 PQVRSVEQV 183 >gi|88606830|ref|YP_504700.1| NifU domain-containing protein [Anaplasma phagocytophilum HZ] gi|88597893|gb|ABD43363.1| NifU domain protein [Anaplasma phagocytophilum HZ] Length = 188 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 80/192 (41%), Positives = 126/192 (65%), Gaps = 7/192 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA-IHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 MFIQ E TPNP TLKF+ V+ + F +A +A+ SPLA +F + G+ V+FG D Sbjct: 1 MFIQIESTPNPDTLKFLLSAEVVGINSGAEFLSADDAQASPLARLLFEVEGVEKVFFGGD 60 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEH-FISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 F+++ K + WE L+P VL ++ ++ + G + +D F E DS + Sbjct: 61 FVSITKAENILWEVLKPEVLVVMTDYCLLQG----TDKEHVQASAEDEEKEFFDEKDSEI 116 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 VQ++KE+++N V+PAVA+DGGDI F+GY++G+VF+ +RGACSGCPSA+ TLK GV +L+ Sbjct: 117 VQQVKELIENYVKPAVAQDGGDIKFRGYKEGVVFVKLRGACSGCPSAAVTLKDGVYGMLS 176 Query: 178 HFVPEVKDIRTV 189 +++P +K + ++ Sbjct: 177 YYIPAIKAVESI 188 >gi|148666783|gb|EDK99199.1| mCG130855, isoform CRA_c [Mus musculus] Length = 219 Score = 211 bits (538), Expect = 4e-53, Method: Composition-based stats. Identities = 71/156 (45%), Positives = 94/156 (60%), Gaps = 7/156 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 69 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 128 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K ++ DW L+P + IM+ F SG P++ G E D VV Sbjct: 129 ITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETP-----PPPGEAGSSEEDDEVV 183 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSM 154 IKE+LD R+RP V DGGD++++G+ DGIV L + Sbjct: 184 AMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKL 219 >gi|108761437|ref|YP_634156.1| NifU family protein [Myxococcus xanthus DK 1622] gi|108465317|gb|ABF90502.1| NifU family protein [Myxococcus xanthus DK 1622] Length = 188 Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats. Identities = 73/189 (38%), Positives = 117/189 (61%), Gaps = 7/189 (3%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYDFI 61 IQ E TPNP+TLK++ + +L GA++F+N ++A+ SPLA ++ + G+ +V G +F+ Sbjct: 5 IQLEWTPNPSTLKYVVDRRLLAGGAVNFTNPEDAQAKSPLARKLMDVRGVTAVMIGTNFV 64 Query: 62 TVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 TV K ++ +W+ L V+ + H + +P++ L + SG V R Sbjct: 65 TVTKGEEGEWDELNDEVMSALDTHLTANEPVVDEAALAAAREAAGPSGG-----GTVEGR 119 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I+++LDN +RPAVA DGGDI + DGIV+L M+GAC+GCPS++ TLK G+ L + Sbjct: 120 IQDILDNEIRPAVAMDGGDITLDRFEDGIVYLHMKGACAGCPSSTATLKMGIEGRLREMI 179 Query: 181 PEVKDIRTV 189 PEV ++ +V Sbjct: 180 PEVLEVVSV 188 >gi|219130127|ref|XP_002185224.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217403403|gb|EEC43356.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 195 Score = 210 bits (535), Expect = 8e-53, Method: Composition-based stats. Identities = 78/197 (39%), Positives = 118/197 (59%), Gaps = 18/197 (9%) Query: 1 MFIQTEDTPNPATLKFIP-GQVVL---VEGAIHFSN----AKEAEISPLASRIFSIPGIA 52 +FIQT DTPNP +LKF+P G VL +G + AKE SPLA +F + G+ Sbjct: 6 IFIQTADTPNPESLKFVPTGVAVLTDNPDGNGFYVTKNDPAKEILRSPLAKSLFDVEGVK 65 Query: 53 SVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI 111 +VY G DF+TV K ++ W+ LRP + ++M S P + +++ ++ + Sbjct: 66 AVYLGGDFVTVTKYAEHKWKILRPQLFDVLMNWADSEKPAL-------LEMPEITDTTIM 118 Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLK 169 E D +V IKE++++R+RPAV DGGDI + + + GIV + + G+C GCPS+S TLK Sbjct: 119 EDDDEIVAMIKELIESRIRPAVQEDGGDIRYVSFEEETGIVTVELAGSCVGCPSSSVTLK 178 Query: 170 YGVANILNHFVPEVKDI 186 GV N+L H++PEV + Sbjct: 179 QGVENMLMHYIPEVSSV 195 >gi|241950625|ref|XP_002418035.1| conserved hypothetical protein [Candida dubliniensis CD36] gi|223641374|emb|CAX43334.1| conserved hypothetical protein [Candida dubliniensis CD36] Length = 237 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 69/193 (35%), Positives = 112/193 (58%), Gaps = 14/193 (7%) Query: 4 QTEDTPNPATLKFIP---GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +T TPNP LKFI + + + F+ +A SPLA +F IPG+ SV GYDF Sbjct: 19 KTLPTPNPNALKFISPECNILPMEDKTFEFTTTLQAIHSPLALTLFKIPGVKSVMLGYDF 78 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGD-PIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +TV K +W +LRP ++ + E S P+I + + + + E +S ++ Sbjct: 79 LTVNKQDYINWANLRPEIVEHLDEFLTSKKHPVITKELVDEAQREA-------EEESELI 131 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+++ R+RPA+ DGGDI KG+ + G VF+ ++GAC C ++ +TLK+G+ ++L Sbjct: 132 SMIKELIETRIRPAIQDDGGDIELKGFDEETGTVFVKLQGACKSCSASEDTLKHGIESML 191 Query: 177 NHFVPEVKDIRTV 189 H+V EVK++ + Sbjct: 192 MHYVEEVKEVIQI 204 >gi|149248632|ref|XP_001528703.1| hypothetical protein LELG_01223 [Lodderomyces elongisporus NRRL YB-4239] gi|146448657|gb|EDK43045.1| hypothetical protein LELG_01223 [Lodderomyces elongisporus NRRL YB-4239] Length = 248 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 72/201 (35%), Positives = 117/201 (58%), Gaps = 15/201 (7%) Query: 1 MFIQTEDTPNPATLKFI-PGQVVLV--EGAIHFSNAKEAEISPLASRIFSIPGIASVYFG 57 + +T TPN LKFI P +L F++ +A SPLA ++F IPG+ S+ G Sbjct: 17 LHFKTASTPNENALKFISPESPILPVANTTFEFNSTLQAIHSPLALQLFKIPGVKSIMLG 76 Query: 58 YDFITVGK-DQYDWEHLRPPVLGMIMEHFI-----SGD-PIIHNGGLGDMKLDDMGSGDF 110 +DF+TV K D +DW L P V+ ++ + SG P++ L + + + Sbjct: 77 HDFLTVNKLDNHDWNSLSPEVMDVMNKFLDKAGENSGKVPVVTQELLNKAESERLAED-- 134 Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETL 168 E DS +V IKE+++ R+RPA+ DGGDI +KG+ + G VFL ++GAC C ++ +TL Sbjct: 135 -EDDSELVLMIKELIETRIRPAIQDDGGDIEYKGFDEETGTVFLKLQGACKSCSASEDTL 193 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ ++L H++ EVK+++ + Sbjct: 194 KGGIESMLMHYIEEVKEVQQI 214 >gi|71654974|ref|XP_816097.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70881201|gb|EAN94246.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 280 Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 67/191 (35%), Positives = 105/191 (54%), Gaps = 4/191 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQ-VVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 + ++T +TPNP L+F + L G ++ F NA A SPLA +FSI G+ +VY Sbjct: 62 LLVETSETPNPDCLRFYSMELSFLKPGFSMDFPNAGHAYKSPLAEILFSIDGVEAVYIAD 121 Query: 59 DFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 ++ITV K DW+ + P + I E S I+ G + + + + D V Sbjct: 122 EYITVRKGHLVDWDSILPMIKESIAEFAESKVNILSEEGEELLSGHN-EDTEPKDDDDEV 180 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + +KE+L R+RP + DGG++ + DG VF+ + GAC CPSAS TLK G+ +L Sbjct: 181 ILAVKELLATRIRPMLQADGGNVRYLDMDDGTVFVLLEGACKSCPSASVTLKNGIERMLM 240 Query: 178 HFVPEVKDIRT 188 H++PEV +++ Sbjct: 241 HWIPEVVEVQE 251 >gi|126131446|ref|XP_001382248.1| hypothetical protein PICST_76567 [Scheffersomyces stipitis CBS 6054] gi|126094073|gb|ABN64219.1| nitrogen fixing protein [Scheffersomyces stipitis CBS 6054] Length = 242 Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 68/192 (35%), Positives = 110/192 (57%), Gaps = 8/192 (4%) Query: 4 QTEDTPNPATLKFIP---GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 QT TPNP LKFI + + F++ ++ SPLA R+F IPG+ SV G +F Sbjct: 18 QTLPTPNPNALKFISPECNILPMAGKTFEFTSTLQSVHSPLALRLFKIPGVRSVMLGENF 77 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W +LRP V+ ++ + + L D + + DS +V Sbjct: 78 LTVNKQDHINWANLRPEVVELMDDFLTTKQEPSITKELVDQSQQESEVAE--AEDSEIVS 135 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+++ R+RPA+ DGGDI +K + + G VFL ++GAC C S+ +TLK+G+ ++L Sbjct: 136 MIKELIETRIRPAIQDDGGDIEYKAFDEETGTVFLKLQGACKSCSSSEDTLKHGIESMLM 195 Query: 178 HFVPEVKDIRTV 189 H++ EV+++ + Sbjct: 196 HYIEEVREVVQI 207 >gi|255723790|ref|XP_002546824.1| hypothetical protein CTRG_01129 [Candida tropicalis MYA-3404] gi|240134715|gb|EER34269.1| hypothetical protein CTRG_01129 [Candida tropicalis MYA-3404] Length = 237 Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats. Identities = 69/193 (35%), Positives = 109/193 (56%), Gaps = 13/193 (6%) Query: 4 QTEDTPNPATLKFIP---GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +T TPNP LKFI + + + F+ +A SPLA +F IPG+ SV G+DF Sbjct: 18 KTLPTPNPNALKFISEECNILPMEDKTFEFTTTMQAMHSPLALMLFKIPGVNSVMLGHDF 77 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISG-DPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +TV K +W +LRP ++ + E S P+I + D + + DS ++ Sbjct: 78 LTVNKQDYINWANLRPEIVEHLDEFLTSKKQPVITKELI------DKANEESEMDDSELM 131 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+++ R+RPA+ DGGDI KG+ + G VF+ ++GAC C ++ +TLK G+ +L Sbjct: 132 SMIKELIETRIRPAIQDDGGDIELKGFDEETGTVFVKLQGACKSCSASEDTLKSGIEGML 191 Query: 177 NHFVPEVKDIRTV 189 H++ EVK++ V Sbjct: 192 MHYIEEVKEVVQV 204 >gi|322824715|gb|EFZ30028.1| hypothetical protein TCSYLVIO_3695 [Trypanosoma cruzi] Length = 280 Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats. Identities = 67/191 (35%), Positives = 105/191 (54%), Gaps = 4/191 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQ-VVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 + ++T +TPNP L+F + L G ++ F NA A SPLA +FSI G+ +VY Sbjct: 62 LLVETSETPNPDCLRFYSMELSFLKPGFSMDFPNAGHAYKSPLAEILFSIDGVEAVYIAD 121 Query: 59 DFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 ++ITV K DW+ + P + I E S I+ G + + + + D V Sbjct: 122 EYITVRKGHLVDWDAILPMIKESIAEFAESKVNILSEEGEELLSGHN-EDTEPKDDDDEV 180 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + +KE+L R+RP + DGG++ + DG VF+ + GAC CPSAS TLK G+ +L Sbjct: 181 ILAVKELLATRIRPMLQADGGNVRYLDMDDGTVFVLLEGACKSCPSASVTLKNGIERMLM 240 Query: 178 HFVPEVKDIRT 188 H++PEV +++ Sbjct: 241 HWIPEVVEVQE 251 >gi|68472639|ref|XP_719638.1| hypothetical protein CaO19.9614 [Candida albicans SC5314] gi|68472898|ref|XP_719514.1| hypothetical protein CaO19.2067 [Candida albicans SC5314] gi|46441335|gb|EAL00633.1| hypothetical protein CaO19.2067 [Candida albicans SC5314] gi|46441464|gb|EAL00761.1| hypothetical protein CaO19.9614 [Candida albicans SC5314] Length = 237 Score = 207 bits (527), Expect = 7e-52, Method: Composition-based stats. Identities = 68/193 (35%), Positives = 112/193 (58%), Gaps = 14/193 (7%) Query: 4 QTEDTPNPATLKFIP---GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +T TPNP LKFI + + + F+ +A SPLA +F IPG+ SV G+DF Sbjct: 19 KTLPTPNPNALKFISPECNILPMNDKTFEFTTTLQAIHSPLALTLFKIPGVKSVMLGHDF 78 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGD-PIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +TV K +W +LRP ++ + E S P+I + + + + E +S ++ Sbjct: 79 LTVNKQDYINWANLRPEIVEQLDEFLTSKKHPVITKELVDEAQREA-------EEESELI 131 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+++ R+RPA+ DGGDI KG+ + G VF+ ++GAC C ++ +TLK+G+ ++L Sbjct: 132 SMIKELIETRIRPAIQDDGGDIELKGFDEETGTVFVKLQGACKSCSASEDTLKHGIESML 191 Query: 177 NHFVPEVKDIRTV 189 H+V EVK++ + Sbjct: 192 MHYVEEVKEVIQI 204 >gi|311745600|ref|ZP_07719385.1| NifU domain protein [Algoriphagus sp. PR1] gi|126578163|gb|EAZ82383.1| NifU domain protein [Algoriphagus sp. PR1] Length = 193 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 67/190 (35%), Positives = 109/190 (57%), Gaps = 10/190 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 + + E PNP +LKF+ +++ EG + F +A AE SPLA +F+ + V+ + Sbjct: 9 VHLYMEANPNPNSLKFVANFMLVDEGVSFDFPDAASAENSPLALELFNFSAVDRVFVASN 68 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+TV K + +W ++ I ++ SG ++ D F E+DS V Sbjct: 69 FVTVTKKEDVEWSEVQNIFRDHIKKYLESGQAVVKADFDKDP--------LFDENDSETV 120 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++IK +LD +RPAV +DGG IVF + DG+V + ++G+CSGCPS++ TLK G+ N+L Sbjct: 121 KKIKGILDEYIRPAVEQDGGAIVFHSFHDGVVKVLLQGSCSGCPSSTVTLKAGIQNLLTR 180 Query: 179 FVPEVKDIRT 188 +PEVK++ Sbjct: 181 MLPEVKEVEA 190 >gi|332664007|ref|YP_004446795.1| nitrogen-fixing NifU domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332332821|gb|AEE49922.1| nitrogen-fixing NifU domain-containing protein [Haliscomenobacter hydrossis DSM 1100] Length = 212 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 66/192 (34%), Positives = 107/192 (55%), Gaps = 5/192 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEI-SPLASRIFSIPGIASVYFGYD 59 + + TE TPNP +LKF+ ++ L G F A SPLA+ +F P + VY + Sbjct: 19 VLLYTEQTPNPESLKFVTNRM-LYRGTADFREVDLATEWSPLATALFDFPYVRGVYVSNN 77 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMK--LDDMGSGDFIESDSA 116 F+TV K+ Y+W + + I + G ++ G + D + ++ Sbjct: 78 FVTVSKELNYEWPDIMLKLKDFIKNYIEEGGELVKEGFAEHISKIEADRAGVAYTGDEAE 137 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +VQ+IKE++D V+PAV DGG+I FK Y +G VF+ M+G+CSGCPS++ TLK G+ +L Sbjct: 138 LVQKIKELIDTYVKPAVEMDGGNIEFKHYENGKVFVLMQGSCSGCPSSTVTLKAGIEGML 197 Query: 177 NHFVPEVKDIRT 188 +P+V+++ Sbjct: 198 KRMIPQVEEVVQ 209 >gi|71662836|ref|XP_818418.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70883670|gb|EAN96567.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 280 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 66/191 (34%), Positives = 104/191 (54%), Gaps = 4/191 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQ-VVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 + ++T +TPNP L+F + L G ++ F NA A SPLA +FSI G+ +VY Sbjct: 62 LLVETSETPNPDCLRFYSMELSFLKPGFSMDFPNAGHAYKSPLAEILFSIDGVEAVYIAD 121 Query: 59 DFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 ++ITV K DW+ + P + I E ++ G D+ + + D V Sbjct: 122 EYITVRKGHLVDWDAILPMIKESIEEFAERKMNVLSEEG-EDLLSGHNEDTEPKDDDDEV 180 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + +KE+L R+RP + DGG++ + DG VF+ + GAC CPSAS TLK G+ +L Sbjct: 181 ILAVKELLATRIRPMLQADGGNVRYLDMDDGTVFVLLEGACKSCPSASVTLKNGIERMLM 240 Query: 178 HFVPEVKDIRT 188 H++PEV +++ Sbjct: 241 HWIPEVVEVQE 251 >gi|260949769|ref|XP_002619181.1| hypothetical protein CLUG_00340 [Clavispora lusitaniae ATCC 42720] gi|238846753|gb|EEQ36217.1| hypothetical protein CLUG_00340 [Clavispora lusitaniae ATCC 42720] Length = 237 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 72/193 (37%), Positives = 114/193 (59%), Gaps = 10/193 (5%) Query: 4 QTEDTPNPATLKFIPGQV---VLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +T TPN LKF+ + L FS + +A SPLA ++F + G+ SV G+DF Sbjct: 17 KTYPTPNENALKFVSPEAEISPLKNKTFEFSTSLQAVHSPLALKLFKLNGVKSVMIGHDF 76 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFIS-GDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +TV K D +W HLRP V+ ++ S +P+I + + D + + E+DS VV Sbjct: 77 LTVNKLDHVNWAHLRPEVVKLLDSFLTSKDEPVITKELIQQGENDSLSAS---ENDSEVV 133 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE++D R+RPA+ DGGDI +K + + G VFL ++GAC C ++ +TLK G+ ++L Sbjct: 134 SMIKELIDTRIRPAIQDDGGDIEYKAFDEETGTVFLKLQGACKSCSASEDTLKGGIESML 193 Query: 177 NHFVPEVKDIRTV 189 H++ EVK++ + Sbjct: 194 MHYIEEVKEVVQI 206 >gi|238881874|gb|EEQ45512.1| conserved hypothetical protein [Candida albicans WO-1] Length = 237 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 68/193 (35%), Positives = 112/193 (58%), Gaps = 14/193 (7%) Query: 4 QTEDTPNPATLKFIP---GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +T TPNP LKFI + + + F+ +A SPLA +F IPG+ SV G+DF Sbjct: 19 KTLPTPNPNALKFISPECNILPMNDKTFEFTTTLQAIHSPLALTLFKIPGVKSVMLGHDF 78 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGD-PIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +TV K +W +LRP ++ + E S P+I + + + + E +S ++ Sbjct: 79 LTVNKQDYINWANLRPGIVEQLDEFLTSKKHPVITKELVDEAQREA-------EEESELI 131 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANIL 176 IKE+++ R+RPA+ DGGDI KG+ + G VF+ ++GAC C ++ +TLK+G+ ++L Sbjct: 132 SMIKELIETRIRPAIQDDGGDIELKGFDEETGTVFVKLQGACKSCSASEDTLKHGIESML 191 Query: 177 NHFVPEVKDIRTV 189 H+V EVK++ + Sbjct: 192 MHYVEEVKEVIQI 204 >gi|157826074|ref|YP_001493794.1| hypothetical protein A1C_05170 [Rickettsia akari str. Hartford] gi|157800032|gb|ABV75286.1| hypothetical protein A1C_05170 [Rickettsia akari str. Hartford] Length = 190 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 77/181 (42%), Positives = 113/181 (62%), Gaps = 8/181 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTEDTPNP +KF PGQ + + + FS E + S LA +F I + S++FG D Sbjct: 1 MFIQTEDTPNPDAIKFFPGQEISSDQPVFFSELAEVKGRSKLAESLFHINNVKSIFFGSD 60 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K + +W+ ++P VL +IM+HF++G P+ D ++ IE + Sbjct: 61 FITVTKQAEGNWQIIKPEVLMIIMDHFVAGFPVFEESTKADTVNHNIDGFSEIEKQIIEI 120 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 RVRP+VA+DGGDI++KG+ +G+V L++RGAC GCPS++ TLK G+ ++L H Sbjct: 121 IE------TRVRPSVAQDGGDIIYKGFENGVVKLALRGACRGCPSSTITLKNGIESMLKH 174 Query: 179 F 179 F Sbjct: 175 F 175 >gi|154339123|ref|XP_001562253.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134062836|emb|CAM39281.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 282 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 61/192 (31%), Positives = 104/192 (54%), Gaps = 4/192 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL--VEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 + ++T +TPNP L+F E ++ + A SPLA +F + G+ +++ Sbjct: 64 LVVETNETPNPDCLRFFSMDFSFLKPEFSMDIPSPAHAYKSPLAEALFGVAGVQAIFLAD 123 Query: 59 DFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 +++TV KD Q DW L + +I+E S + ++ G ++ + + E D V Sbjct: 124 EYVTVRKDPQADWGALVHIIKEVIVEFAESKENVLSEAGEAEL-MGYNDDTEPNEDDDEV 182 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +KE+L R+RP + DGG++ F +G VFL + GAC CPS+ TLK G+ +L Sbjct: 183 VLAVKELLATRIRPMLRADGGNVRFIDMDEGTVFLLLEGACKSCPSSHITLKSGIERMLM 242 Query: 178 HFVPEVKDIRTV 189 H++PEV +++ V Sbjct: 243 HWIPEVVEVQEV 254 >gi|297182169|gb|ADI18341.1| thioredoxin-like proteins and domains [uncultured Rhodobacterales bacterium HF4000_03E16] Length = 146 Score = 204 bits (519), Expect = 6e-51, Method: Composition-based stats. Identities = 79/151 (52%), Positives = 103/151 (68%), Gaps = 6/151 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPATLKF+PGQ VL G F +A+ A SPLA R+F++ G+ V+FG+DF Sbjct: 1 MFIQTESTPNPATLKFLPGQTVLEMGTADFPSAEGASASPLAERLFAVNGVEGVFFGHDF 60 Query: 61 ITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K + DW+HL+P +LG IMEHF SG P++ G G + D +V Sbjct: 61 VTVTKAEAMDWDHLKPSLLGAIMEHFQSGAPVMAGDAAG-----PSGHAEHSGEDGEIVS 115 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIV 150 +IKE+LD+RVRPAVA+DGGDI F G+ G+V Sbjct: 116 QIKELLDSRVRPAVAQDGGDITFHGFERGVV 146 >gi|255038627|ref|YP_003089248.1| nitrogen-fixing NifU domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254951383|gb|ACT96083.1| nitrogen-fixing NifU domain protein [Dyadobacter fermentans DSM 18053] Length = 198 Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats. Identities = 66/196 (33%), Positives = 106/196 (54%), Gaps = 14/196 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEA----EISPLASRIFSIPGIASVY 55 +F+ TE +PNP ++KF+ ++ +G + + + + A + SPLA+ +F P + V+ Sbjct: 6 VFVYTELSPNPNSMKFVLNFELVPDGLSFDYPSLEAALEEGKASPLAADLFQFPHVKRVF 65 Query: 56 FGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESD 114 +FIT+ K D WE + I +F P+ + K D + D Sbjct: 66 IASNFITITKGDDIAWEEVLRDTKQFIKIYFEENHPVF------EQKTIDTNTLIVDARD 119 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG--IVFLSMRGACSGCPSASETLKYGV 172 S VQ+IK LD VRPAV DGG I F + +G +V + ++G+CSGCPS++ TLK G+ Sbjct: 120 SDTVQKIKAALDQYVRPAVESDGGAINFHSFDEGSGVVKVLLQGSCSGCPSSTLTLKAGI 179 Query: 173 ANILNHFVPEVKDIRT 188 N+L VP+VK++ Sbjct: 180 ENLLTRMVPDVKEVVA 195 >gi|327402876|ref|YP_004343714.1| nitrogen-fixing NifU domain-containing protein [Fluviicola taffensis DSM 16823] gi|327318384|gb|AEA42876.1| nitrogen-fixing NifU domain-containing protein [Fluviicola taffensis DSM 16823] Length = 201 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 64/191 (33%), Positives = 104/191 (54%), Gaps = 5/191 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEI-SPLASRIFSIPGIASVYFGYDF 60 + E TPNP T+KF+ + +L+ G ++ F + EA+ SPLA +F+ P + +V+ +F Sbjct: 8 VYVEMTPNPNTMKFVANKYLLINGESVEFHSGSEAKGYSPLAEELFNFPFVKTVFITANF 67 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV- 118 +TV K D W+ + + I + G I+ + K + + Sbjct: 68 VTVAKNDSISWDFVTMELREFIKSWIVDGKDILIQMPVAKPKAASGDDSKPAKEYAPSEY 127 Query: 119 -QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 I+ +LD VRPAV DGG I F G+ +G V +++RGACSGCPS++ TLK G+ N+L Sbjct: 128 DDAIRSLLDEYVRPAVEGDGGAIDFVGFEEGTVTVALRGACSGCPSSTATLKGGIENLLK 187 Query: 178 HFVPEVKDIRT 188 +P+VK++ Sbjct: 188 QHLPDVKEVVA 198 >gi|332291487|ref|YP_004430096.1| nitrogen-fixing NifU domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332169573|gb|AEE18828.1| nitrogen-fixing NifU domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 300 Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 58/191 (30%), Positives = 103/191 (53%), Gaps = 5/191 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNP+TLKF+ + LV A F + + +P+A +F +P + V+F ++I+ Sbjct: 109 VYAESTPNPSTLKFVANKK-LVTTAFEFKSIDDTANAPMAKALFHLPYVKEVFFDENYIS 167 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 V K D +W+ + I ++ G I+ L + + + + E+ + + I Sbjct: 168 VQKYDVAEWDEVVTETREFIRDYIQDGKEIVTAAQLKTPQQAEAIAEEKFETLDDISKEI 227 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETLKYGVANILNHF 179 +++ V+PAVA DGG+I+FK Y V + ++GACSGCPS++ TLK G+ N+L Sbjct: 228 VNIIEEYVKPAVASDGGNIMFKNYDPKTQNVSVILQGACSGCPSSTFTLKNGIENMLKQM 287 Query: 180 VPE-VKDIRTV 189 +P + + + Sbjct: 288 LPGKINMVEAI 298 Score = 77.1 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 2/113 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E T NPA KF Q ++ + F N EA SPLA ++F +P + +VY +F+ Sbjct: 6 ISVEGTSNPAIKKFQADQFLVNHNSYEFKNIDEAANSPLAQQLFYLPFVKTVYITQNFVA 65 Query: 63 VGKDQ-YDWEHLRPPVLGMIMEHF-ISGDPIIHNGGLGDMKLDDMGSGDFIES 113 + K +W ++ V I ++ +G II + + + S Sbjct: 66 IEKYNIVEWIDVQQEVANQIEDYLNDNGLVIIEDVAAKKIPVTVYAESTPNPS 118 >gi|146418001|ref|XP_001484967.1| hypothetical protein PGUG_02696 [Meyerozyma guilliermondii ATCC 6260] Length = 244 Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats. Identities = 68/192 (35%), Positives = 114/192 (59%), Gaps = 9/192 (4%) Query: 4 QTEDTPNPATLKFI-PGQVV-LVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 QT TPN LKF+ P ++V + F+++ +A SPLA ++F +PG+ SV G DF+ Sbjct: 23 QTLSTPNENALKFVSPTKIVPMENKTFEFTSSLQAVHSPLALKLFKLPGVRSVMLGPDFL 82 Query: 62 TVGK-DQYDWEHLRPPVLGMIMEHFISG-DPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 TV K D +W HLRP VL ++ + +P+I + + + + +V Sbjct: 83 TVNKQDHVNWAHLRPEVLSLLDKFLTEKQEPVITKELIEATEKEAAEADADD---LEIVS 139 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+++ R+RPA+ DGGDI +K + + G VFL ++GAC C ++ +TLK+G+ ++L Sbjct: 140 MIKELIETRIRPAIQDDGGDIEYKAFDEETGTVFLKLQGACKSCSASEDTLKHGIESMLK 199 Query: 178 HFVPEVKDIRTV 189 H+V EV+++ + Sbjct: 200 HYVEEVQEVEQI 211 >gi|86130774|ref|ZP_01049373.1| NifU-like protein [Dokdonia donghaensis MED134] gi|85818185|gb|EAQ39345.1| NifU-like protein [Dokdonia donghaensis MED134] Length = 300 Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats. Identities = 59/191 (30%), Positives = 103/191 (53%), Gaps = 5/191 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNP+T+KF+ + LV + F + + +P+A +F P + V+F ++I+ Sbjct: 109 VYAESTPNPSTIKFVANKK-LVTTSFEFKSIDDTANAPMAKALFHFPFVKEVFFDENYIS 167 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 V K D +W+ + I ++ G I+ L + D + + E+ V + I Sbjct: 168 VQKYDMAEWDEVVTETREFIRDYIQDGKEIVTAEQLKTPQQVDAIAEEKFETLDDVSKEI 227 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETLKYGVANILNHF 179 +++ V+PAVA DGG+IVFK Y + V + ++GACSGCPS++ TLK G+ N+L Sbjct: 228 VNIIEEYVKPAVASDGGNIVFKHYDEKTQNVSVILQGACSGCPSSTFTLKNGIENMLKQM 287 Query: 180 VPE-VKDIRTV 189 +P + + + Sbjct: 288 LPGKINMVEAI 298 Score = 74.4 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 2/113 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E T NPA KF Q ++ + F N EA SPLA ++F +P + +VY +F+ Sbjct: 6 ISVEGTSNPAIKKFQADQFLVNHNSYEFKNIDEAANSPLAQQLFYLPFVKTVYIAQNFVA 65 Query: 63 VGKDQ-YDWEHLRPPVLGMIMEHF-ISGDPIIHNGGLGDMKLDDMGSGDFIES 113 + K +W ++ V + ++ +G II + + + S Sbjct: 66 IEKYNIVEWIDVQQEVANQVEDYLNDNGLVIIEDVAAKKIPVTVYAESTPNPS 118 >gi|163753913|ref|ZP_02161036.1| thioredoxin-related protein [Kordia algicida OT-1] gi|161326127|gb|EDP97453.1| thioredoxin-related protein [Kordia algicida OT-1] Length = 301 Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats. Identities = 55/191 (28%), Positives = 98/191 (51%), Gaps = 5/191 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E TPNP +KF+ + ++ + F N E + +PLA +F P + ++ ++I+ Sbjct: 110 IYAESTPNPTVMKFVANKKIV-DRIFEFKNIDETKYAPLAQSLFHFPFVKEIFLDKNYIS 168 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 + K D +W + + I + G +I + K S + E + + I Sbjct: 169 ITKYDMVEWNDITMEIREFIRNYIQEGREVISKDIPVEQKEKIQISDESFEELDDISKEI 228 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDG--IVFLSMRGACSGCPSASETLKYGVANILNHF 179 +L+ ++PAVA DGG+I+F Y IV + ++GACSGCPS++ TLK G+ N L + Sbjct: 229 VNILEEYIKPAVASDGGNIMFDSYDPNSKIVKVVLQGACSGCPSSTMTLKSGIENTLKNL 288 Query: 180 V-PEVKDIRTV 189 + +V ++ + Sbjct: 289 LKGQVSEVVAI 299 Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 58/147 (39%), Gaps = 12/147 (8%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 + I E T NPA +KF + + F N EA+ SPLA ++F +P + +++ +F Sbjct: 4 ITISIEKTSNPAIIKFEASTFLSRHNSYEFKNIDEAKDSPLAQQLFYLPFVKTIFISGNF 63 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIES------ 113 I + + WE ++ V I + G +I + + + Sbjct: 64 IAIERYNIVTWEDVQDEVAEQIQNYINEGKEVISESASPKKVVPVTIYAESTPNPTVMKF 123 Query: 114 --DSAVVQRI---KEVLDNRVRPAVAR 135 + +V RI K + + + P Sbjct: 124 VANKKIVDRIFEFKNIDETKYAPLAQS 150 >gi|190346499|gb|EDK38598.2| hypothetical protein PGUG_02696 [Meyerozyma guilliermondii ATCC 6260] Length = 244 Score = 200 bits (509), Expect = 9e-50, Method: Composition-based stats. Identities = 68/192 (35%), Positives = 114/192 (59%), Gaps = 9/192 (4%) Query: 4 QTEDTPNPATLKFI-PGQVV-LVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 QT TPN LKF+ P ++V + F+++ +A SPLA ++F +PG+ SV G DF+ Sbjct: 23 QTLSTPNENALKFVSPTKIVPMENKTFEFTSSLQAVHSPLALKLFKLPGVRSVMLGPDFL 82 Query: 62 TVGK-DQYDWEHLRPPVLGMIMEHFISG-DPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 TV K D +W HLRP V ++ + +P+I + + + + S +V Sbjct: 83 TVNKQDHVNWAHLRPEVSSLLDKFLTEKQEPVITKELIEATEKEAAEADADD---SEIVS 139 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+++ R+RPA+ DGGDI +K + + G VFL ++GAC C ++ +TLK+G+ ++L Sbjct: 140 MIKELIETRIRPAIQDDGGDIEYKAFDEETGTVFLKLQGACKSCSASEDTLKHGIESMLK 199 Query: 178 HFVPEVKDIRTV 189 H+V EV+++ + Sbjct: 200 HYVEEVQEVEQI 211 >gi|325286802|ref|YP_004262592.1| nitrogen-fixing NifU domain-containing protein [Cellulophaga lytica DSM 7489] gi|324322256|gb|ADY29721.1| nitrogen-fixing NifU domain-containing protein [Cellulophaga lytica DSM 7489] Length = 300 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 56/190 (29%), Positives = 105/190 (55%), Gaps = 5/190 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E+TPNPA ++F+ ++++ F N +EA+ S LA+ +F P + V+ ++I+ Sbjct: 109 VYAENTPNPAAMRFVANKLIVP-TIFEFKNKEEAKDSDLATTLFQFPYVKEVFLDENYIS 167 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 V K D+ DW + + I G ++ + K + + E+ ++I Sbjct: 168 VTKTDEADWNEITLELRESIQAFLTEGKEVVSANSISKQKQEAPATQLQDENLDDTSKQI 227 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETLKYGVANILNHF 179 ++L+ V+PAVA DGG+I+FK Y + V + ++GACSGCPS++ TLK G+ N+L + Sbjct: 228 IDILEEYVKPAVASDGGNIMFKSYDENTKKVNVILQGACSGCPSSTFTLKNGIENMLKNM 287 Query: 180 VPE-VKDIRT 188 + + + ++ Sbjct: 288 MGDKIGEVVA 297 Score = 80.2 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 3/110 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 + I T T NPA LKF + + + N EA+ SPLA ++F +P I +VY +F Sbjct: 6 ITIYT--TTNPAILKFETNHFITKNNSYEYKNIDEAKNSPLAQQLFYLPFIKTVYISGNF 63 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD 109 I + + D W+ +R V ++++ SG+ ++H + + + Sbjct: 64 IALERFDIVAWDDVRDEVAQQLVDYLNSGEVVVHEQEDPQSVPATVYAEN 113 >gi|221103919|ref|XP_002156303.1| PREDICTED: similar to GK25604 [Hydra magnipapillata] Length = 192 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 65/195 (33%), Positives = 104/195 (53%), Gaps = 14/195 (7%) Query: 2 FIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNA----KEAEISPLASRIFSIPGIASVYF 56 I TE +PNP ++KF+ + EG + + +E++ SPLA +F P + ++ Sbjct: 1 MIYTELSPNPNSMKFVLNFELAPEGLTFDYPSLASTVEESKASPLAGDLFQFPFVRRIFI 60 Query: 57 GYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDS 115 +FIT+ KD + +WE + + + F +P+ K D + +DS Sbjct: 61 ASNFITITKDDETEWEDIVYDIKKFMKIFFEQNNPVFA------QKTIDKNTLIVDANDS 114 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVA 173 AV+ +IK LD VRPAV DGG I F + + G V + ++G+CSGCPS++ TLK G+ Sbjct: 115 AVIAKIKSTLDQYVRPAVESDGGAINFASFDEISGQVKVYLQGSCSGCPSSTVTLKDGIE 174 Query: 174 NILNHFVPEVKDIRT 188 +L VPEVK++ Sbjct: 175 RLLKTMVPEVKEVVA 189 >gi|312885490|ref|ZP_07745129.1| Scaffold protein Nfu/NifU [Mucilaginibacter paludis DSM 18603] gi|311302070|gb|EFQ79100.1| Scaffold protein Nfu/NifU [Mucilaginibacter paludis DSM 18603] Length = 182 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 64/187 (34%), Positives = 109/187 (58%), Gaps = 13/187 (6%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + TE TPNPAT+KFI + +L+ G++ ++ + AE SP A +F + V+F +F+T Sbjct: 5 VYTESTPNPATMKFIVNK-LLINGSVDYATRESAEKSPFAKELFKFSFVNGVFFASNFVT 63 Query: 63 VGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 V K + DW L P + + S + ++ + F +D+ + +I Sbjct: 64 VTKTEGSDWNDLEPILKEFVKGAVESELLV---------QIKEQEEVAFEGTDAEI--KI 112 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP 181 +++L + VRPAV +DGG I +K + +G+V + +RG+CSGCPS++ TLK G+ N+L VP Sbjct: 113 QQILQDYVRPAVEQDGGAITYKSFNEGVVTVELRGSCSGCPSSTITLKSGIENLLKRMVP 172 Query: 182 EVKDIRT 188 EV ++ + Sbjct: 173 EVTEVVS 179 >gi|326801010|ref|YP_004318829.1| Scaffold protein Nfu/NifU [Sphingobacterium sp. 21] gi|326551774|gb|ADZ80159.1| Scaffold protein Nfu/NifU [Sphingobacterium sp. 21] Length = 184 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 61/187 (32%), Positives = 112/187 (59%), Gaps = 12/187 (6%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + TE TPNPAT+KF+ + +L G++ F + ++A+ SP A +F + V+F +F+T Sbjct: 6 VYTESTPNPATMKFLVNK-LLYNGSLDFPDKEKAQSSPFARELFKFNFVNGVFFASNFVT 64 Query: 63 VGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 + K + +WE + P + + S + +++ D+ + + E++ ++I Sbjct: 65 ITKSEDSEWEDILPILKDFVKGAVES------ELLIHEVERDENVAFEGSETE----KKI 114 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP 181 ++VL + VRPAV +DGG I +K + +G+V + +RG+CSGCPS++ TLK G+ +L VP Sbjct: 115 QQVLHDYVRPAVEQDGGAIAYKSFDEGVVTVELRGSCSGCPSSTITLKAGIEGLLKRMVP 174 Query: 182 EVKDIRT 188 EV+++ Sbjct: 175 EVQEVVA 181 >gi|320581036|gb|EFW95258.1| hypothetical protein HPODL_3630 [Pichia angusta DL-1] Length = 242 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 69/201 (34%), Positives = 107/201 (53%), Gaps = 12/201 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQ----VVLVEGAIHFSNAKEAEI-SPLASRIFSIPG--IAS 53 +FIQT+ TPN LKF+P + + + K+A S LA ++ S+ I S Sbjct: 20 LFIQTQSTPNENALKFVPSEFKFLPSPNTPTLEITGIKDALNKSELAFKLLSVNDKSIKS 79 Query: 54 VYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLG--DMKLDDMGSGDF 110 + FGY+FITV K + + W L+P + ++ EH SG +I+ + + + D Sbjct: 80 ILFGYNFITVIKGEKHSWSLLKPEIFSILTEHLTSGQAVINQKYINILGQQSAENEDLDG 139 Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETL 168 E + VV I E+L R++PA+ DGGDI F + + G VFL + GAC C S+ TL Sbjct: 140 YEDEDEVVALINELLITRIQPAIQEDGGDIKFVRFDEDTGTVFLKLIGACKSCSSSEITL 199 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ +L ++ EVK ++ V Sbjct: 200 KNGIEEMLKFYIDEVKSVQQV 220 >gi|300175875|emb|CBK21871.2| Scaffold protein Isu1 [Blastocystis hominis] Length = 271 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 74/194 (38%), Positives = 109/194 (56%), Gaps = 11/194 (5%) Query: 1 MFIQTEDTPNPATLKFIP--GQVVLVE---GAIHFSNAKEAEISPLASRIFSIPGIASVY 55 +F+Q ++TPNP KF+P VL + F+ KEA SPLAS++F IP + SV Sbjct: 28 LFVQIKETPNPDVQKFLPTPSISVLPSEFGHTMEFNTTKEARASPLASKLFDIPEVKSVL 87 Query: 56 FGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESD 114 G D+I V + +WE+L P + I++ F S D H + + ++D Sbjct: 88 LGNDYICVTRQKGVEWEYLNPAIFHTILDFFSSPD---HEAVVLKPDEIPEDPNEIKDTD 144 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGV 172 S VV+ IKE+LD R+RP + DGGDI F + + G + + M GAC GC S+S TLK GV Sbjct: 145 SEVVRLIKELLDTRIRPRIKADGGDIFFHTFDESSGELLVRMTGACKGCASSSVTLKQGV 204 Query: 173 ANILNHFVPEVKDI 186 ++ H++PEV + Sbjct: 205 EQMMKHYIPEVVTV 218 >gi|255532822|ref|YP_003093194.1| nitrogen-fixing NifU domain-containing protein [Pedobacter heparinus DSM 2366] gi|255345806|gb|ACU05132.1| nitrogen-fixing NifU domain protein [Pedobacter heparinus DSM 2366] Length = 183 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 65/187 (34%), Positives = 106/187 (56%), Gaps = 12/187 (6%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + TE TPNPAT+KF+ + +L+ G+ F+ + AE SP A +F + V+F +F+T Sbjct: 5 VYTEQTPNPATMKFMVNK-LLINGSEDFATKESAEHSPFAKELFKFSFVNGVFFASNFVT 63 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 V K + +W + P + + S I +D + S + +I Sbjct: 64 VTKTEDAEWADIEPILKEFVKGAVESEYKI----------KEDTSAEAPAFEGSDLEIKI 113 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP 181 +++L + VRPAV +DGG I +K + DG+V + +RG+CSGCPS++ TLK G+ N+L VP Sbjct: 114 QQILHDYVRPAVEQDGGAISYKSFDDGVVTVELRGSCSGCPSSTITLKSGIQNLLQRMVP 173 Query: 182 EVKDIRT 188 EVK++ + Sbjct: 174 EVKEVVS 180 >gi|42523787|ref|NP_969167.1| nifU related protein [Bdellovibrio bacteriovorus HD100] gi|39575994|emb|CAE80160.1| nifU related protein [Bdellovibrio bacteriovorus HD100] Length = 186 Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 78/185 (42%), Positives = 114/185 (61%), Gaps = 11/185 (5%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 E TPNPAT+KF+ + V +G +EAE SPLA++IF P +SVY G DFITV K Sbjct: 12 EPTPNPATMKFLLHKKVTDQG-FDCPTVQEAERSPLAAKIFGFPWTSSVYVGPDFITVTK 70 Query: 66 -DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEV 124 D DWE L P+ G+I EH +P++ + + + + E+DS +V+ IK V Sbjct: 71 QDWVDWELLAHPLSGLIQEHLDRDEPVV---------VTFVEAEEDNENDSPMVRNIKSV 121 Query: 125 LDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVK 184 L+ +RP VA DGGDIVF Y + ++++ M+GACSGCPS++ TLK G+ + PE+ Sbjct: 122 LNREIRPVVALDGGDIVFHKYENNVLYIHMKGACSGCPSSTVTLKEGIEVRMKELFPEIV 181 Query: 185 DIRTV 189 ++ +V Sbjct: 182 EVVSV 186 >gi|304320546|ref|YP_003854189.1| NifU-like domain protein [Parvularcula bermudensis HTCC2503] gi|303299448|gb|ADM09047.1| NifU-like domain protein [Parvularcula bermudensis HTCC2503] Length = 163 Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats. Identities = 76/165 (46%), Positives = 108/165 (65%), Gaps = 6/165 (3%) Query: 28 IHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFI 86 + F + A++SPLAS +F I G+ VY G DF+TV KD +W+HL+P VLG + ++ Sbjct: 1 MDFPTLESAKVSPLASALFDIDGVVEVYLGADFLTVTKDPSVEWQHLKPAVLGTVADYLA 60 Query: 87 SGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR 146 +G P++ G D D+ +V++I ++++ RVRPAVA+DGGDIVF + Sbjct: 61 AGIPVVDQGAAADS---ADTPDDYEGETKEIVEQIIDLIETRVRPAVAQDGGDIVFHRFV 117 Query: 147 --DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 DGIVFLSMRGACSGCPS++ TLK G+ N+L H+VPEV + V Sbjct: 118 PGDGIVFLSMRGACSGCPSSTMTLKSGIENLLKHYVPEVTAVEAV 162 >gi|124006329|ref|ZP_01691163.1| NifU domain protein [Microscilla marina ATCC 23134] gi|123987986|gb|EAY27657.1| NifU domain protein [Microscilla marina ATCC 23134] Length = 197 Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats. Identities = 60/190 (31%), Positives = 103/190 (54%), Gaps = 10/190 (5%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGA-IHFSNAKEAEISPLASRIF-SIPGIASVYFGYDF 60 I TE PNP +LK++ +++ +G F +A+ A+ SPLA+ +F + V+ +F Sbjct: 11 IYTESNPNPNSLKYVINYMLVPDGTTFDFPDAETAQQSPLATELFSKFSYVDRVFMMSNF 70 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K ++ DW + V + + P++ + D + + + + + Sbjct: 71 VTVTKKEEADWHDVAGEVKEFLQGYLEEQKPLLT------QDIQDEYDKELNKDEPEIDR 124 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +IK +L+ VRPAV DGG I F Y +G V + ++G+CSGCPS+ TLK G+ N+L Sbjct: 125 KIKGILEEYVRPAVESDGGAINFHSYENGTVKVLLQGSCSGCPSSMVTLKSGIENLLKRM 184 Query: 180 VPE-VKDIRT 188 +PE VK++ Sbjct: 185 LPEDVKEVVA 194 >gi|332519966|ref|ZP_08396430.1| nitrogen-fixing NifU domain protein [Lacinutrix algicola 5H-3-7-4] gi|332044525|gb|EGI80719.1| nitrogen-fixing NifU domain protein [Lacinutrix algicola 5H-3-7-4] Length = 300 Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats. Identities = 56/191 (29%), Positives = 97/191 (50%), Gaps = 5/191 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNP+ +KF+ + + A F +A+ SPLA+ +F +P + SV+ ++++ Sbjct: 109 VYAESTPNPSVIKFVANKKI-ANAAYEFVTIDDAKPSPLATELFHLPFVKSVFIDENYVS 167 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 V K D +W+ + + I + G II ++ E+ + I Sbjct: 168 VTKYDVAEWQEITNELREFIRSYIEDGKEIISANAPEAIEKSTKNVDAHFETLDDTSKEI 227 Query: 122 KEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +L+ V+PAVA DGG+I F+ Y V + ++GACSGCPS++ TLK G+ N+L Sbjct: 228 VNILEEYVKPAVASDGGNIQFESYNADTKTVKVILQGACSGCPSSTFTLKNGIENMLKEM 287 Query: 180 VPE-VKDIRTV 189 + V + + Sbjct: 288 LKGKVNTVEAI 298 Score = 71.0 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 1/98 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + ++T N + +KF Q + + F+N EA+ SPLA +F +P + VY +FI Sbjct: 6 VTIQETSNNSIIKFELNQFITQHQSFEFNNIDEAKESPLAQELFYLPFVKKVYITSNFIA 65 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGD 99 + + + +W+ ++ V I + G +I Sbjct: 66 IERFNIVEWKDVQDEVSEQIKAYLNKGGIVITENATSK 103 >gi|312129640|ref|YP_003996980.1| nitrogeN-fixing nifu domain protein [Leadbetterella byssophila DSM 17132] gi|311906186|gb|ADQ16627.1| nitrogen-fixing NifU domain protein [Leadbetterella byssophila DSM 17132] Length = 199 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 69/195 (35%), Positives = 99/195 (50%), Gaps = 14/195 (7%) Query: 2 FIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNA----KEAEISPLASRIFSIPGIASVYF 56 I TE +PNP ++KF+ ++ EG + + E + SPLAS +F + V+ Sbjct: 7 MIYTELSPNPNSMKFVLNYEIVPEGLSFDYPTKASTFDEKKASPLASDLFLFDFVERVFI 66 Query: 57 GYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDS 115 +FIT+ K DW+ + V I +F P+ K D + SDS Sbjct: 67 SSNFITLTKRGDIDWDDVLGDVRQFIKTYFDENHPVFA------QKTIDSHTLIVQGSDS 120 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVA 173 VV +IK LD VRPAV DGG I F + + G V + ++G+CSGCPSAS TLK G+ Sbjct: 121 EVVAKIKSTLDQYVRPAVESDGGAINFSSFEEESGTVKVLLQGSCSGCPSASLTLKAGIE 180 Query: 174 NILNHFVPEVKDIRT 188 +L +PEVK + Sbjct: 181 RLLTTMIPEVKSVEA 195 >gi|294659524|ref|XP_461916.2| DEHA2G08492p [Debaryomyces hansenii CBS767] gi|199434030|emb|CAG90379.2| DEHA2G08492p [Debaryomyces hansenii] Length = 240 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 68/192 (35%), Positives = 108/192 (56%), Gaps = 9/192 (4%) Query: 4 QTEDTPNPATLKFI-PGQVVLV--EGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +T +TPNP LKFI P +L F++ +A SPLA ++F + G+ S+ G DF Sbjct: 21 KTLETPNPNALKFISPECQILPIPSKTFEFTSTLQAIHSPLALKLFKLHGVRSIMLGEDF 80 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D +W LRP V+ ++ S + L + + E DS +V Sbjct: 81 LTVNKQDHINWAQLRPEVVDLLDGFLTSKKESVVTKELIEESE---REIESSEDDSEIVS 137 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+++ R+RPA+ DGGDI FKG+ + G VFL ++GAC C S+ +TLK G+ ++ Sbjct: 138 MIKELIETRIRPAIQDDGGDIEFKGFDEETGNVFLKLQGACKTCSSSEDTLKNGIEQMMK 197 Query: 178 HFVPEVKDIRTV 189 H++ V+++ + Sbjct: 198 HYIDGVQEVIQI 209 >gi|195559882|ref|XP_002077376.1| GD12677 [Drosophila simulans] gi|194202482|gb|EDX16058.1| GD12677 [Drosophila simulans] Length = 175 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 62/149 (41%), Positives = 90/149 (60%), Gaps = 8/149 (5%) Query: 42 ASRIFSIPGIASVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDM 100 A +F + G+ V+FG DFIT+ K + +W ++P V +IM+ F SG P++++ Sbjct: 1 AKLLFRVEGVKGVFFGSDFITISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPN-- 58 Query: 101 KLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSG 160 + +E D V IKE+LD R+RP V DGGDIVF GY G+V L M+G+CS Sbjct: 59 -----ADTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGYEAGVVKLKMQGSCSS 113 Query: 161 CPSASETLKYGVANILNHFVPEVKDIRTV 189 CPS+ TLK GV N+L ++PEV+ + V Sbjct: 114 CPSSIVTLKNGVQNMLQFYIPEVESVEQV 142 >gi|322499834|emb|CBZ34907.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 284 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 4/192 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL--VEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 + ++T +TPNP ++F V E ++ + +A SPLA +F + G+ +V+ Sbjct: 66 IVVETNETPNPDCMRFFSMDVSFLKPEFSMDIPSPAQAYKSPLAEALFGVAGVQAVFLAD 125 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 +++TV K Q DW L P + +I+E S + ++ G ++ L + + D V Sbjct: 126 EYVTVRKHPQADWAALIPIIKEVIVEFAESKENVLSAAGEEEL-LGYNNDTEPDDDDDEV 184 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +KE+L R+RP + DGG++ F +G VFL + G+C CPS+ TLK G+ +L Sbjct: 185 VLAVKELLATRIRPMLRADGGNVRFIDMDEGTVFLLLEGSCKSCPSSHVTLKSGIERMLM 244 Query: 178 HFVPEVKDIRTV 189 H++PEV + + V Sbjct: 245 HWIPEVVEAQEV 256 >gi|86140721|ref|ZP_01059280.1| NifU-like domain protein [Leeuwenhoekiella blandensis MED217] gi|85832663|gb|EAQ51112.1| NifU-like domain protein [Leeuwenhoekiella blandensis MED217] Length = 301 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 58/191 (30%), Positives = 99/191 (51%), Gaps = 5/191 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNPA LKF+ + ++ E + F N EA+ +PLA +F P + V+ ++++ Sbjct: 110 VYAESTPNPAVLKFVTNKKIVTE-TLEFKNIDEAKNAPLALALFHFPFVKEVFMDSNYVS 168 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 V K D +W+ + V I + G II + + E+ + I Sbjct: 169 VQKYDVAEWDDVFQEVREFIKTYIEEGKEIISENFKKTPQAVEEQKEVEFEAMDDTSKEI 228 Query: 122 KEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +++ V+PAVA DGG+I+FK Y V + ++GACSGCPS++ TLK G+ N+L Sbjct: 229 ANIIEEYVKPAVASDGGNILFKHYDPESKNVKVILQGACSGCPSSTFTLKNGIENMLKEM 288 Query: 180 V-PEVKDIRTV 189 + ++ + + Sbjct: 289 LRGKINSVEAI 299 Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 1/116 (0%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E T NPA KF ++ + F N EA+ SPLA ++F +P + +VY +FI Sbjct: 6 ITIEPTSNPAIKKFQANSFLVDHNSYEFKNIDEAKNSPLAQQLFYLPFVKTVYISQNFIA 65 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 + K + +W ++ + I +I K+ + + + + Sbjct: 66 IEKFNIVEWIDIQDELSAQIENFLNDNGVVIIEDATSVKKVPVTVYAESTPNPAVL 121 >gi|91216703|ref|ZP_01253668.1| nifU related protein [Psychroflexus torquis ATCC 700755] gi|91185172|gb|EAS71550.1| nifU related protein [Psychroflexus torquis ATCC 700755] Length = 302 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 58/190 (30%), Positives = 107/190 (56%), Gaps = 6/190 (3%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNP+ +KF+ + +++E + F + +AE+SPLA ++F P + ++ ++I+ Sbjct: 111 VYAESTPNPSVMKFVANKKLVLE-SAEFKSIDDAELSPLAQKLFHFPFVKEIFMDDNYIS 169 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 + K D +WE + + G I ++ G I+ +G + K + + + + I Sbjct: 170 INKYDMAEWEEITNELRGFIKDYLEEGGKILESGKVQSKKTEAPSPEIDTSNLDDISKEI 229 Query: 122 KEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 ++L+ V+PAVA DGG+I+FK Y V + ++GACSGCPS++ TLK G+ ++L Sbjct: 230 VQILEEYVKPAVASDGGNIMFKSYNAESKDVQVILQGACSGCPSSTITLKNGIESMLKEM 289 Query: 180 VPEVKDIRTV 189 + + TV Sbjct: 290 LQG--KVETV 297 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 1/98 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ + T P+ LKF + + + + N +EA SP+AS++F +P + +VY +FI Sbjct: 6 VEIKPTNKPSILKFEFNEFLTKQKGYEYHNIEEAMKSPIASQLFYLPFVKTVYISQNFIA 65 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGD 99 + K + +W ++ + +++H G I+ Sbjct: 66 IEKFNIVEWADVQNEISEQLLKHMNDGGKIVDEKEENS 103 >gi|4790|emb|CAA49299.1| YKL253 [Saccharomyces cerevisiae] Length = 230 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 112/206 (54%), Gaps = 17/206 (8%) Query: 1 MFIQTEDTPNPATLKFIP--GQVVLVEGAIHF--SNAKE--AEISPLASRIF-SIPGIAS 53 + I+T TPN LKF+ G+++ G+ N E S LA +IF PG+ S Sbjct: 22 IHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVES 81 Query: 54 VYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLD-------DM 105 + G DF+T+ KD W ++P ++ ++ + G+ +I + + +M Sbjct: 82 LMIGDDFLTINKDRMVHWNSIKPEIIDLLTKQLAYGEDVISKEFHAVQEEEGEGGYKINM 141 Query: 106 GSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPS 163 + E D V + I+E++D R+RPA+ DGGDI ++G+ G V+L ++GAC+ C S Sbjct: 142 PKFELTEEDEEVSELIEELIDTRIRPAILEDGGDIDYRGWDPKTGTVYLRLQGACTSCSS 201 Query: 164 ASETLKYGVANILNHFVPEVKDIRTV 189 + TLKYG+ ++L H+V EVK++ + Sbjct: 202 SEVTLKYGIESMLKHYVDEVKEVIQI 227 >gi|151941505|gb|EDN59868.1| nifu-like protein [Saccharomyces cerevisiae YJM789] Length = 256 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 112/206 (54%), Gaps = 17/206 (8%) Query: 1 MFIQTEDTPNPATLKFIP--GQVVLVEGAIHF--SNAKE--AEISPLASRIF-SIPGIAS 53 + I+T TPN LKF+ G+++ G+ N E S LA +IF PG+ S Sbjct: 22 IHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVES 81 Query: 54 VYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLD-------DM 105 + G DF+T+ KD W ++P ++ ++ + G+ +I + + +M Sbjct: 82 LMIGDDFLTINKDRMVHWNSIKPEIIDLLTKQLACGEDVISKEFHAVQEEEGEGGYKINM 141 Query: 106 GSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPS 163 + E D V + I+E++D R+RPA+ DGGDI ++G+ G V+L ++GAC+ C S Sbjct: 142 PKFELSEEDEEVSELIEELIDTRIRPAILEDGGDIDYRGWDPKTGTVYLRLQGACTSCSS 201 Query: 164 ASETLKYGVANILNHFVPEVKDIRTV 189 + TLKYG+ ++L H+V EVK++ + Sbjct: 202 SEVTLKYGIESMLKHYVDEVKEVIQI 227 >gi|91205888|ref|YP_538243.1| NifU-like protein [Rickettsia bellii RML369-C] gi|157826752|ref|YP_001495816.1| NifU-like protein [Rickettsia bellii OSU 85-389] gi|91069432|gb|ABE05154.1| NifU-like protein [Rickettsia bellii RML369-C] gi|157802056|gb|ABV78779.1| NifU-like protein [Rickettsia bellii OSU 85-389] Length = 185 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 75/181 (41%), Positives = 113/181 (62%), Gaps = 11/181 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAE-ISPLASRIFSIPGIASVYFGYD 59 MFIQTEDTPNP +KF PGQ + + I FS E + S LA +F+I + S++FG D Sbjct: 1 MFIQTEDTPNPDAIKFFPGQEISTQ-PIFFSERAEVKGKSKLAESLFNINNVKSIFFGSD 59 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 FITV K + DW+ ++P VL ++M+HF++G P+ D + S + + Sbjct: 60 FITVTKKTESDWQVIKPEVLMVVMDHFVAGFPVFEVSSKVDDVNLEGFSDIEKQIIEIIE 119 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 R++ P+VA+DGGDI++KG+ +G+V L++RGAC GCPS++ TLK G+ ++L H Sbjct: 120 TRVR--------PSVAQDGGDIIYKGFENGVVKLALRGACLGCPSSTITLKNGIESMLKH 171 Query: 179 F 179 F Sbjct: 172 F 172 >gi|146089377|ref|XP_001470367.1| hypothetical protein [Leishmania infantum JPCM5] gi|134070400|emb|CAM68738.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 284 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 4/192 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL--VEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 + ++T +TPNP ++F V E ++ + +A SPLA +F + G+ +V+ Sbjct: 66 IVVETNETPNPDCMRFFSMDVSFLKPEFSMDIPSPAQAYKSPLAEALFGVAGVQAVFLAD 125 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 +++TV K Q DW L P + +I+E S + ++ G ++ L + + D V Sbjct: 126 EYVTVRKHPQADWAALIPIIKEVIVEFAESKENVLSAAGEEEL-LGYNNDTEPDDDDDEV 184 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +KE+L R+RP + DGG++ F +G VFL + G+C CPS+ TLK G+ +L Sbjct: 185 VLAVKELLATRIRPMLRADGGNVRFIDMDEGTVFLLLEGSCKSCPSSHVTLKSGIERMLM 244 Query: 178 HFVPEVKDIRTV 189 H++PEV + + V Sbjct: 245 HWIPEVVEAQEV 256 >gi|323347797|gb|EGA82061.1| Nfu1p [Saccharomyces cerevisiae Lalvin QA23] Length = 256 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 112/206 (54%), Gaps = 17/206 (8%) Query: 1 MFIQTEDTPNPATLKFIP--GQVVLVEGAIHF--SNAKE--AEISPLASRIF-SIPGIAS 53 + I+T TPN LKF+ G+++ G+ N E S LA +IF PG+ S Sbjct: 22 IHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVES 81 Query: 54 VYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLD-------DM 105 + G DF+T+ KD W ++P ++ ++ + G+ +I + + +M Sbjct: 82 LMIGDDFLTINKDRMVHWNSIKPEIIDLLTKQLAXGEDVISKEFHAVQEEEGEGGYKINM 141 Query: 106 GSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPS 163 + E D V + I+E++D R+RPA+ DGGDI ++G+ G V+L ++GAC+ C S Sbjct: 142 PKFELTEEDEEVSELIEELIDTRIRPAILEDGGDIDYRGWDPKTGTVYLRLQGACTSCSS 201 Query: 164 ASETLKYGVANILNHFVPEVKDIRTV 189 + TLKYG+ ++L H+V EVK++ + Sbjct: 202 SEVTLKYGIESMLKHYVDEVKEVIQI 227 >gi|6322811|ref|NP_012884.1| Nfu1p [Saccharomyces cerevisiae S288c] gi|549668|sp|P32860|NFU1_YEAST RecName: Full=NifU-like protein, mitochondrial; Flags: Precursor gi|486050|emb|CAA81875.1| unnamed protein product [Saccharomyces cerevisiae] gi|45269699|gb|AAS56230.1| YKL040C [Saccharomyces cerevisiae] gi|190409786|gb|EDV13051.1| hypothetical protein SCRG_03979 [Saccharomyces cerevisiae RM11-1a] gi|207343478|gb|EDZ70927.1| YKL040Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256272476|gb|EEU07457.1| Nfu1p [Saccharomyces cerevisiae JAY291] gi|259147796|emb|CAY81046.1| Nfu1p [Saccharomyces cerevisiae EC1118] gi|285813219|tpg|DAA09116.1| TPA: Nfu1p [Saccharomyces cerevisiae S288c] Length = 256 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 112/206 (54%), Gaps = 17/206 (8%) Query: 1 MFIQTEDTPNPATLKFIP--GQVVLVEGAIHF--SNAKE--AEISPLASRIF-SIPGIAS 53 + I+T TPN LKF+ G+++ G+ N E S LA +IF PG+ S Sbjct: 22 IHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVES 81 Query: 54 VYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLD-------DM 105 + G DF+T+ KD W ++P ++ ++ + G+ +I + + +M Sbjct: 82 LMIGDDFLTINKDRMVHWNSIKPEIIDLLTKQLAYGEDVISKEFHAVQEEEGEGGYKINM 141 Query: 106 GSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPS 163 + E D V + I+E++D R+RPA+ DGGDI ++G+ G V+L ++GAC+ C S Sbjct: 142 PKFELTEEDEEVSELIEELIDTRIRPAILEDGGDIDYRGWDPKTGTVYLRLQGACTSCSS 201 Query: 164 ASETLKYGVANILNHFVPEVKDIRTV 189 + TLKYG+ ++L H+V EVK++ + Sbjct: 202 SEVTLKYGIESMLKHYVDEVKEVIQI 227 >gi|261329222|emb|CBH12201.1| HIRA-interacting protein 5, putative [Trypanosoma brucei gambiense DAL972] Length = 280 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 71/192 (36%), Positives = 106/192 (55%), Gaps = 6/192 (3%) Query: 2 FIQTE--DTPNPATLKFIPGQ-VVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFG 57 FI E +TPNP L+F + L G ++ +A+ A SPLA +FSI G+ SV+ Sbjct: 60 FIVVEKNETPNPDCLRFYSMELSFLPPGRSLDLPDAQHAGKSPLAELLFSISGVQSVFLA 119 Query: 58 YDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 ++ITVGK DW L P + I+E SG I+ G +D+ D + D Sbjct: 120 DEYITVGKVPHVDWGSLVPQIQECIVEFAESGVGILSEEGEACF-VDNNNDTDPEDDDDE 178 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 VV +KE+L R+RP + DGG++ + DG VF+ + GAC CPS+ TLK G+ +L Sbjct: 179 VVLAVKELLSARIRPLLRADGGNVRYISMDDGTVFVLLEGACKSCPSSGVTLKNGIERML 238 Query: 177 NHFVPEVKDIRT 188 H++PEV +++ Sbjct: 239 MHWIPEVVEVQE 250 >gi|255713524|ref|XP_002553044.1| KLTH0D07458p [Lachancea thermotolerans] gi|238934424|emb|CAR22606.1| KLTH0D07458p [Lachancea thermotolerans] Length = 248 Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 113/204 (55%), Gaps = 15/204 (7%) Query: 1 MFIQTEDTPNPATLKFIP--GQVVLVEG--AIHFSNAKEA--EISPLASRIF-SIPGIAS 53 + I++ TPN LKFI G+++ G ++ N E+ + SPLASR+F PG+ + Sbjct: 21 LHIKSVSTPNENALKFISTDGELLQERGKPSVEIKNTDESLIKHSPLASRLFTQCPGVEA 80 Query: 54 VYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLD-----DMGS 107 + G DFITV KD+ W + P V+ ++ ++ SG + + ++ Sbjct: 81 LMIGDDFITVNKDEMVHWNQITPSVIDLLTQYLASGREAVTPEFFSVQEQGVGYDVNVPK 140 Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSAS 165 ++ E + + I E++ R+RPA+ DGGDI ++GY G V+L ++GAC C S+ Sbjct: 141 FEYNEDEQEISDMIDELIQTRIRPAIMDDGGDIQYRGYDPQTGTVYLKLQGACKSCSSSE 200 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TLK+G+ ++L H++ EV+++ + Sbjct: 201 VTLKHGIESMLKHYIEEVENVVQI 224 >gi|323354104|gb|EGA85950.1| Nfu1p [Saccharomyces cerevisiae VL3] Length = 249 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 112/206 (54%), Gaps = 17/206 (8%) Query: 1 MFIQTEDTPNPATLKFIP--GQVVLVEGAIHF--SNAKE--AEISPLASRIF-SIPGIAS 53 + I+T TPN LKF+ G+++ G+ N E S LA +IF PG+ S Sbjct: 22 IHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVES 81 Query: 54 VYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLD-------DM 105 + G DF+T+ KD W ++P ++ ++ + G+ +I + + +M Sbjct: 82 LMIGDDFLTINKDRMVHWNSIKPEIIDLLTKQLAYGEDVISKEFHAVQEEEGEGGYKINM 141 Query: 106 GSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPS 163 + E D V + I+E++D R+RPA+ DGGDI ++G+ G V+L ++GAC+ C S Sbjct: 142 PKFELTEEDEEVSELIEELIDTRIRPAILEDGGDIDYRGWDPKTGTVYLRLQGACTSCSS 201 Query: 164 ASETLKYGVANILNHFVPEVKDIRTV 189 + TLKYG+ ++L H+V EVK++ + Sbjct: 202 SEVTLKYGIESMLKHYVDEVKEVIQI 227 >gi|284037367|ref|YP_003387297.1| nitrogen-fixing NifU domain protein [Spirosoma linguale DSM 74] gi|283816660|gb|ADB38498.1| nitrogen-fixing NifU domain protein [Spirosoma linguale DSM 74] Length = 200 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 62/194 (31%), Positives = 104/194 (53%), Gaps = 15/194 (7%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEA----EISPLASRIFSIPGIASVYFG 57 I TE +PNP ++KF+ ++ G + ++ +A + SPLA +F + V+ Sbjct: 11 IFTEGSPNPNSMKFVVNFELVPTGLSFDYATPGDALLDGKASPLAVALFGFEFVRRVFIS 70 Query: 58 YDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 +F+TV KD + DW+ + V + ++F P+ + + ++ DS Sbjct: 71 ANFVTVTKDDETDWDEVLLEVKLFLKDYFGEQKPVFSQRTVD-------TNTTKLDMDSE 123 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVAN 174 VQ+IK VL+ ++PAV DGG I F + + G V + ++G+CSGCPS++ TLK G+ N Sbjct: 124 TVQKIKAVLEQYIKPAVESDGGAISFYSFDEPSGTVKVLLQGSCSGCPSSTLTLKAGIEN 183 Query: 175 ILNHFVPEVKDIRT 188 +L VPEVK + Sbjct: 184 LLTRLVPEVKLVEA 197 >gi|72391004|ref|XP_845796.1| HIRA-interacting protein 5 [Trypanosoma brucei TREU927] gi|62176423|gb|AAX70531.1| HIRA-interacting protein 5, putative [Trypanosoma brucei] gi|70802332|gb|AAZ12237.1| HIRA-interacting protein 5, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 280 Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats. Identities = 67/191 (35%), Positives = 106/191 (55%), Gaps = 4/191 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQ-VVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 + ++ +TPNP L+F + L G ++ +A+ A SPLA +FSI G+ SV+ Sbjct: 61 IVVEKNETPNPDCLRFYSMELSFLPPGRSLDLPDAQHAGKSPLAELLFSISGVQSVFLAD 120 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 ++ITVGK DW L P + I+E SG ++ G +D+ D + D V Sbjct: 121 EYITVGKVPHVDWGSLVPQIQECIVEFAESGVGVLSEEGEACF-VDNNNDTDPEDDDDEV 179 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +KE+L R+RP + DGG++ + DG VF+ + GAC CPS+ TLK G+ +L Sbjct: 180 VLAVKELLSARIRPLLRADGGNVRYISMDDGTVFVLLEGACKSCPSSGVTLKNGIERMLM 239 Query: 178 HFVPEVKDIRT 188 H++PEV +++ Sbjct: 240 HWIPEVVEVQE 250 >gi|149369678|ref|ZP_01889530.1| thioredoxin-related protein [unidentified eubacterium SCB49] gi|149357105|gb|EDM45660.1| thioredoxin-related protein [unidentified eubacterium SCB49] Length = 306 Score = 193 bits (491), Expect = 9e-48, Method: Composition-based stats. Identities = 62/197 (31%), Positives = 100/197 (50%), Gaps = 11/197 (5%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E TPNPA LKF+ + LV G F N +A+ +PLA+ +F+ P + V+ ++I+ Sbjct: 109 IYGETTPNPAVLKFVANKP-LVTGTFDFKNIDDAKHAPLATALFNFPFVKEVFMSNNYIS 167 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDD------MGSGDFIESDS 115 V K D +W+ + + I + G I + L + ++ +S S Sbjct: 168 VMKYDIAEWDEISMQLREFIRSYIEDGKEIFTDAMLNETIKEEQKAVASPTENGSDKSYS 227 Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETLKYGVA 173 + I ++LD ++PAVA DGG I F Y V + ++GACSGCPSA+ TLK G+ Sbjct: 228 DIDNEIMDILDEYIKPAVASDGGHIAFDSYDANTKTVKVILQGACSGCPSATVTLKNGIE 287 Query: 174 NILNHFVPE-VKDIRTV 189 +L + V+ + + Sbjct: 288 TMLRDMMKGRVEIVEAI 304 Score = 84.1 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I + T N +KF+ + + F N +EA SP+A ++F +P + +VY +FI Sbjct: 6 IIIQPTNNENIVKFVANSFLTQAKSYEFKNIEEAVESPIAQQLFYLPFVKTVYISQNFIA 65 Query: 63 VGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGG 96 + K W+ ++ V I E+ SG P+++ Sbjct: 66 IEKYNIVSWDMVQDEVAESINEYIESGKPVVNESA 100 >gi|149280243|ref|ZP_01886366.1| thioredoxin-related protein [Pedobacter sp. BAL39] gi|149229080|gb|EDM34476.1| thioredoxin-related protein [Pedobacter sp. BAL39] Length = 183 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 61/187 (32%), Positives = 103/187 (55%), Gaps = 12/187 (6%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + TE TPNPAT+KF+ + +L+ G+ F+ + AE S A +F + V+F +F+T Sbjct: 5 VYTEQTPNPATMKFMVNK-LLINGSEDFATRESAEHSQFAKELFKFNFVNGVFFASNFVT 63 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 + K + DW+ + + + S I + S + +I Sbjct: 64 ITKTEDADWQDIEALLKDFVKGAVESEYKIKEETQAEAPAFEG----------SDLEIKI 113 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP 181 +++L + VRPAV +DGG I +K + +G+V + +RG+CSGCPS++ TLK G+ N+L VP Sbjct: 114 QQILHDYVRPAVEQDGGAISYKSFDEGVVTVELRGSCSGCPSSTITLKSGIQNLLQRMVP 173 Query: 182 EVKDIRT 188 EVK++ + Sbjct: 174 EVKEVVS 180 >gi|298206804|ref|YP_003714983.1| NifU-like domain protein [Croceibacter atlanticus HTCC2559] gi|83849436|gb|EAP87304.1| NifU-like domain protein [Croceibacter atlanticus HTCC2559] Length = 305 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 55/196 (28%), Positives = 104/196 (53%), Gaps = 10/196 (5%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E TPNP+ LKF+ + ++V+ + F + + +PLA +F+ P + ++ ++++ Sbjct: 109 IYAESTPNPSVLKFVANKKLVVQ-SEEFKSIDDTANAPLAQALFNFPFVKEIFIDENYVS 167 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGD-MKLDDMGSGDFIESD----SA 116 + K D +W + + I +H +SG P++ + G+ + + D Sbjct: 168 IQKYDMAEWGDITTELRDFISQHIMSGKPVVTEHRANKLAPQTNGGTTEKPQLDLSHLDD 227 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETLKYGVAN 174 + I E+LD ++PAVA DGG+I+F Y + V + ++GACSGCPS++ TLK G+ Sbjct: 228 TSKAIVEILDEYIKPAVASDGGNIMFDSYDEETKSVKVILQGACSGCPSSTMTLKNGIET 287 Query: 175 ILNHFVPE-VKDIRTV 189 +L + V+ + + Sbjct: 288 MLRDMLNGKVEHVVAI 303 Score = 90.6 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 1/116 (0%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I + T NP+ LKF + + + F N EA+ SPLA ++F +P + +VY +FI Sbjct: 5 IDIQSTSNPSILKFETNKFLSRHDSFEFHNIDEAKPSPLAQKLFYLPFVKTVYIAQNFIA 64 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 + K D +W ++ V I+E+ SG+ +I + + + + S + Sbjct: 65 IQKYDIAEWSDVQDEVKSQILEYLNSGEDVIIDKTPQKKSVPVTIYAESTPNPSVL 120 >gi|225011341|ref|ZP_03701795.1| nitrogen-fixing NifU domain protein [Flavobacteria bacterium MS024-3C] gi|225004524|gb|EEG42492.1| nitrogen-fixing NifU domain protein [Flavobacteria bacterium MS024-3C] Length = 301 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 56/191 (29%), Positives = 103/191 (53%), Gaps = 5/191 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E TPNP+ +K++ ++++ F N EA+ +PLA +F +P + V+ ++I+ Sbjct: 110 IYAESTPNPSVMKYVANKLIVP-ALFEFKNIDEAKDAPLAKELFLMPFVKEVFMDQNYIS 168 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 V K D +WE + + I +SG + + K + ++ ++I Sbjct: 169 VTKYDVAEWEEINNELREKIRLFLMSGQESVGANTVQKEKEKAPTTLLHTDNLDDTSKQI 228 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHF 179 ++L+ V+PAVA DGG+I+F Y + V + ++GACSGCPS++ TLK G+ N+L + Sbjct: 229 VDILEEYVKPAVASDGGNIMFDSYDEVSKTVNVILQGACSGCPSSTFTLKNGIENMLKNM 288 Query: 180 VPE-VKDIRTV 189 + + V + + Sbjct: 289 MGDKVAQVIAI 299 Score = 80.6 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 2 FIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 I T NP +KF + + F N +A+ SPLA ++F +P + +VY +FI Sbjct: 6 HITIIPTNNPNIMKFETNHFISPDKNYEFQNIDQAKESPLAQQLFHLPFVKTVYISSNFI 65 Query: 62 TVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIH 93 + K D WE ++ + ++++ +G ++ Sbjct: 66 GIEKYDIVGWEDIKDSLGQQLVDYLNTGAAVVA 98 >gi|325104464|ref|YP_004274118.1| Scaffold protein Nfu/NifU [Pedobacter saltans DSM 12145] gi|324973312|gb|ADY52296.1| Scaffold protein Nfu/NifU [Pedobacter saltans DSM 12145] Length = 183 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 59/190 (31%), Positives = 107/190 (56%), Gaps = 14/190 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 + + TE TPNP T+KFI + +L+ G++ + + A S AS ++ + V+F +F Sbjct: 3 ITVYTESTPNPNTMKFIVNK-LLINGSVDYPTRESATESRFASELYKFSFVNGVFFASNF 61 Query: 61 ITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE-SDSAVV 118 +T+ K + +W + P + + S + + +F++ S V Sbjct: 62 VTITKSEDAEWADIEPILKEFVKGAVES-----------EYAVQSKKEEEFVDFEGSEVE 110 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +I+++L + V+PAV +DGG I +K + DG+V + +RG+CSGCPS++ TLK G+ ++L Sbjct: 111 IKIQQILHDYVKPAVEQDGGAIAYKSFEDGVVTVELRGSCSGCPSSTITLKSGIQSLLQR 170 Query: 179 FVPEVKDIRT 188 VPEVK++ + Sbjct: 171 MVPEVKEVVS 180 >gi|163786509|ref|ZP_02180957.1| thioredoxin-related protein [Flavobacteriales bacterium ALC-1] gi|159878369|gb|EDP72425.1| thioredoxin-related protein [Flavobacteriales bacterium ALC-1] Length = 300 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 4/181 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNP+ LKF+ + VLV F++ +EA+ SPLA+ +F P I +++ +FI+ Sbjct: 109 VYAESTPNPSVLKFVCNK-VLVPSLYEFTSIEEAKPSPLATALFQFPFIKNIFIEKNFIS 167 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 + K D +WE + + + + G I+++ + + E+ + I Sbjct: 168 ITKFDIIEWEDITLQLREFLKSYIEDGKTILNDDAPQKLNKTEEAIEQKFEALDDTSKNI 227 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETLKYGVANILNHF 179 +L+ ++PAV DGG+I FK Y V + ++GACSGCPS++ TLK G+ N+L Sbjct: 228 VNILEEYIKPAVESDGGNIEFKSYDANTKKVEVLLQGACSGCPSSTFTLKNGIENMLKEM 287 Query: 180 V 180 + Sbjct: 288 L 288 Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 1/97 (1%) Query: 7 DTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKD 66 T N LKF + + + F+N +A+ SPLA ++F +P + VY +FI + + Sbjct: 10 PTSNETILKFEADRFLTNHNSFEFNNIDDAKHSPLAQQLFYLPFVKKVYIATNFIAIERY 69 Query: 67 Q-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKL 102 +W+ ++ V I ++ + ++ + Sbjct: 70 NIVEWKDVQNEVAAQIEDYLSNDGVVVTEEAIKPKAA 106 >gi|225012214|ref|ZP_03702651.1| nitrogen-fixing NifU domain protein [Flavobacteria bacterium MS024-2A] gi|225003769|gb|EEG41742.1| nitrogen-fixing NifU domain protein [Flavobacteria bacterium MS024-2A] Length = 295 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 57/191 (29%), Positives = 101/191 (52%), Gaps = 9/191 (4%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNPA +KF+ + LV ++ F N EA+ +PLA ++F +P + V+ ++++ Sbjct: 108 VYAESTPNPAVMKFVANKP-LVSHSVEFKNIDEAKNAPLAQKLFHLPFVKEVFIDANYVS 166 Query: 63 VGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 + K + +WE + V I G+ I+ + S + ++ +V Sbjct: 167 ITKFEVTEWEEVVMEVREFIRAFIEEGNVILTEAPIAIEIDQKNQSSNLTATEEQIVS-- 224 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +LD ++PAVA DGG+I+F Y + V + ++GACSGCPS++ TLK G+ +L Sbjct: 225 --ILDEYIKPAVASDGGNIMFDSYDEVEKEVHVVLQGACSGCPSSTFTLKNGIETMLKEM 282 Query: 180 VPE-VKDIRTV 189 +P + + V Sbjct: 283 MPGKIATVIAV 293 Score = 54.0 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 1/99 (1%) Query: 16 FIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK-DQYDWEHLR 74 F Q + + +HF N EA+ +PL ++F +P + SV ++V + D +WE + Sbjct: 19 FEVDQEIGPKEIVHFKNIDEAKGAPLIQQLFYLPFVKSVSLSEKKVSVERFDILEWEEVI 78 Query: 75 PPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIES 113 V + + G +I + + + Sbjct: 79 DEVKEQLQTYLNEGGVVIETQRNDKIPVSVYAESTPNPA 117 >gi|313677059|ref|YP_004055055.1| scaffold protein nfu/nifu [Marivirga tractuosa DSM 4126] gi|312943757|gb|ADR22947.1| Scaffold protein Nfu/NifU [Marivirga tractuosa DSM 4126] Length = 198 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 63/191 (32%), Positives = 106/191 (55%), Gaps = 11/191 (5%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 I E PNP +LKF Q+++ EG + F + ++ +PLA +F + V++ +FI Sbjct: 11 IYMEANPNPNSLKFATNQMLVPEGDSFDFPSIEDTAQAPLAEILFKKEYVDRVFYMSNFI 70 Query: 62 TVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 TV K +Y+W ++ V I E SG +I +++ D+ ++ + ++ Sbjct: 71 TVTKKPEYEWVEIQNDVKDTIKEFLESGKRVI------ELQAKDLFEETNTSENAELEEQ 124 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETLKYGVANILNH 178 IK +LD ++PAV +DGG I F Y V L ++GACSGCPS++ TLK G+ N+L Sbjct: 125 IKNILDEYIKPAVEQDGGAISFHSYEKDTQRVNLLLQGACSGCPSSTITLKAGIENLLKR 184 Query: 179 FVP-EVKDIRT 188 +P +VK+++ Sbjct: 185 MLPNDVKEVQA 195 >gi|305665213|ref|YP_003861500.1| NifU-like protein [Maribacter sp. HTCC2170] gi|88709966|gb|EAR02198.1| nifU related protein [Maribacter sp. HTCC2170] Length = 300 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 58/192 (30%), Positives = 107/192 (55%), Gaps = 5/192 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 + + E TPNP+ +KF+ + ++ A F N EA+ S LA ++F +P + V+F ++ Sbjct: 107 ITVYAEVTPNPSVMKFVSNKRIVP-TAFEFKNIDEAKDSALAQQLFQLPFVKEVFFDENY 165 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 ++V K D +WE + P+ M+ + G+ ++ + + S ES + Sbjct: 166 VSVNKFDVAEWEDITMPLREMVRDFLAEGNEVVTVSAITLKSAEAPKSQLNNESLDDTSK 225 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDG--IVFLSMRGACSGCPSASETLKYGVANILN 177 +I ++L+ V+PAVA DGG+I+F+ Y V + ++GACSGCPS++ TLK G+ +L Sbjct: 226 QIVDILEEYVKPAVASDGGNILFQSYEKDTKTVNVILQGACSGCPSSTFTLKNGIETMLK 285 Query: 178 HFVPE-VKDIRT 188 + + + V ++ Sbjct: 286 NMMGDKVNEVVA 297 Score = 85.6 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 1/98 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I + T NPA LKF + F N EA+ SPLA ++F +P I +VYF +FI Sbjct: 6 ITVKQTNNPAVLKFETNHFITKNNNYEFKNIDEAKNSPLAQQLFYLPFIKTVYFSGNFIG 65 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGD 99 + + D +W ++ V ++E+ SG+PI+ G Sbjct: 66 LERFDIVEWADVKDEVAQQLVEYLNSGEPIVIEEEQGK 103 >gi|45185274|ref|NP_982991.1| ABR045Wp [Ashbya gossypii ATCC 10895] gi|44980932|gb|AAS50815.1| ABR045Wp [Ashbya gossypii ATCC 10895] Length = 239 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 63/199 (31%), Positives = 108/199 (54%), Gaps = 14/199 (7%) Query: 1 MFIQTEDTPNPATLKFIP--GQVVLVEG--AIHFSN--AKEAEISPLASRIF-SIPGIAS 53 + I+T TPN LK++ G+++ G ++ N + +PLA ++F +PG+ + Sbjct: 20 LHIKTLTTPNENALKYVSTDGELLQERGAPSVEIRNFDMELIRQAPLAEKLFAQVPGVEA 79 Query: 54 VYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE 112 V G DF+TV KD + W + P VL ++ + SG + G + + + E Sbjct: 80 VMIGDDFVTVSKDAELGWAQVTPRVLEVLTQQLASGQAAVQ----GQVAVGGTERFQYDE 135 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKY 170 + + I+E++ RVRPA+ DGGDI ++G+ G V+L ++GAC C S+ TLK+ Sbjct: 136 EEQEISDTIEEIIQTRVRPAIMDDGGDIQYRGWDPETGRVYLKLQGACKSCSSSEVTLKH 195 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ ++L H+V EV + V Sbjct: 196 GIESMLKHYVEEVSGVEQV 214 >gi|79313311|ref|NP_001030735.1| NFU4; structural molecule [Arabidopsis thaliana] gi|332642928|gb|AEE76449.1| NifU-like protein 4 [Arabidopsis thaliana] Length = 222 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 62/147 (42%), Positives = 86/147 (58%), Gaps = 6/147 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+ TPNP++L F PG+ V+ G+ F N + A SPLA I+SI G+ V+FG DF Sbjct: 80 MFIQTQSTPNPSSLMFYPGKPVMEVGSADFPNVRSALGSPLAKSIYSIDGVVRVFFGSDF 139 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 +TV K D W+ L+P + +M+ + SG P+ + K E DS V Sbjct: 140 VTVTKSDDVSWDILKPEIFAAVMDFYSSGQPLFLDSQAAAAK-----DTAISEDDSETVA 194 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYR 146 IKE+L+ R+RPAV DGGDI + G+ Sbjct: 195 MIKELLETRIRPAVQDDGGDIEYCGFD 221 >gi|146299436|ref|YP_001194027.1| NifU domain-containing protein [Flavobacterium johnsoniae UW101] gi|146153854|gb|ABQ04708.1| nitrogen-fixing NifU domain protein [Flavobacterium johnsoniae UW101] Length = 299 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 58/192 (30%), Positives = 99/192 (51%), Gaps = 5/192 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 + + E TPNPA LKF+ ++ L A+ + N + SPLA +F P + V+ ++ Sbjct: 106 ITVYGETTPNPAALKFVVSRM-LTRNAVEYKNIDQTASSPLAQELFKFPYVKEVFIDENY 164 Query: 61 ITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 I+V K + DW+ + + I + +G ++ + +D+ + + Q Sbjct: 165 ISVTKYEINDWQEITLELRTFIKQFIENGGTVLDESLIQTATKNDVTKDEAFDKLDVTSQ 224 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +I +L+ V+PAVA DGG+I F Y D V + ++GACSGCPS++ TLK G+ N+L Sbjct: 225 QIINILEEYVKPAVAADGGNIAFDSYNEDDKTVKVILQGACSGCPSSTFTLKSGIENMLK 284 Query: 178 HFV-PEVKDIRT 188 + E + Sbjct: 285 SMLNDEAIKVEA 296 Score = 80.6 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 1/131 (0%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I ++T NP LKF + + F N EA+ SPLA ++F +P + +VY +FI Sbjct: 4 ITIKETQNPTILKFEFEDFITQNQSFEFKNIDEAQASPLAQQLFYLPFVKTVYISGNFIA 63 Query: 63 VGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 + + DW+ ++ V I G II K G+ + +A+ + Sbjct: 64 IERYSIVDWDDVKDAVAEQITSFVDKGGVIIKVDENKAKKQPITVYGETTPNPAALKFVV 123 Query: 122 KEVLDNRVRPA 132 +L Sbjct: 124 SRMLTRNAVEY 134 >gi|260838224|ref|XP_002613749.1| hypothetical protein BRAFLDRAFT_84497 [Branchiostoma floridae] gi|229299138|gb|EEN69758.1| hypothetical protein BRAFLDRAFT_84497 [Branchiostoma floridae] Length = 263 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 77/191 (40%), Positives = 102/191 (53%), Gaps = 24/191 (12%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT++TPNP +LKF+PG VL G F N A SPLA + + Sbjct: 64 MFIQTQETPNPNSLKFLPGCEVLETGTFDFPNHSAAHASPLARLVHPLDD---------- 113 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 D YDW+ L+P + IM+ F SG PI+ + D VQ Sbjct: 114 -----DTYDWQILKPDIFATIMDFFASGLPILTDEPP-------PSDTVIHPDDDETVQM 161 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 IKE+LD R+RP V DGGDIV+ G+ GIV L M+G+CS CPS+ TL+ GV N+L Sbjct: 162 IKELLDTRIRPTVQEDGGDIVYVGFDQESGIVKLKMQGSCSSCPSSVVTLRSGVQNMLQF 221 Query: 179 FVPEVKDIRTV 189 ++PEV+ + V Sbjct: 222 YIPEVQGVEEV 232 >gi|260060626|ref|YP_003193706.1| nifU related protein [Robiginitalea biformata HTCC2501] gi|88784756|gb|EAR15925.1| nifU related protein [Robiginitalea biformata HTCC2501] Length = 300 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 56/191 (29%), Positives = 103/191 (53%), Gaps = 5/191 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNPA +K++ + ++ + F + +A SPLA ++F P + V+ +++I+ Sbjct: 109 VYAEVTPNPAVMKYVANKQLVPD-VFEFKDIDQARHSPLAQKLFGFPFVKEVFMDHNYIS 167 Query: 63 VGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 V K + +WE + + I E+ +G ++ G + +E + Q I Sbjct: 168 VTKYEVAEWEDVSMELREFIREYLAAGGEVLEPGASAEKSQIAGVPEGNLEQMDPISQEI 227 Query: 122 KEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +L+ V+PAVA DGG+IVF+ Y V + ++GACSGCPS++ TLK G+ +L + Sbjct: 228 AGILEEYVKPAVASDGGNIVFQSYEAESKTVHVILQGACSGCPSSTFTLKNGIQTMLQNM 287 Query: 180 VPE-VKDIRTV 189 + + V ++ + Sbjct: 288 MGDRVNEVVAI 298 Score = 85.6 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 55/97 (56%), Gaps = 1/97 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I ++T NPA LKF Q ++ +G+ + N EA+ SPLA ++F +P I +VY +F+ Sbjct: 6 ITLKETNNPAILKFEANQPLVTKGSYEYKNIDEAKDSPLAQQLFYLPFIKTVYISGNFVA 65 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLG 98 + + D W+ ++ V ++E+ +G+P++ Sbjct: 66 MERFDIVTWDDVKQEVAQQLVEYLNAGEPVVDEPEQA 102 >gi|156839096|ref|XP_001643243.1| hypothetical protein Kpol_460p20 [Vanderwaltozyma polyspora DSM 70294] gi|156113844|gb|EDO15385.1| hypothetical protein Kpol_460p20 [Vanderwaltozyma polyspora DSM 70294] Length = 256 Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 69/205 (33%), Positives = 111/205 (54%), Gaps = 16/205 (7%) Query: 1 MFIQTEDTPNPATLKFIP--GQVVLVEGA--IHFSNAKEA--EISPLASRIF-SIPGIAS 53 + ++T TPN LKFI G++ G + N ++ E S A R+F PGI S Sbjct: 27 LHVKTVSTPNENALKFISTDGELFQDRGTHSLEIKNTDDSLIEQSKFAQRLFVQCPGIES 86 Query: 54 VYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG---- 108 + G DF+TV KD+ W ++P VL ++++ SG+ I+ K + G Sbjct: 87 LMIGDDFVTVNKDEMIHWNQIKPNVLEILLQQLSSGESIVTQKFHEISKESESGYDIQLP 146 Query: 109 --DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSA 164 + E + V I E++ R+RPA+ DGGDI ++GY G V+L ++GAC C S+ Sbjct: 147 KFELNEDEQEVSDMIDELIQTRIRPAIQDDGGDIQYRGYDPKTGKVYLKLQGACKSCSSS 206 Query: 165 SETLKYGVANILNHFVPEVKDIRTV 189 +TLKYG+ ++L H+V EV+++ + Sbjct: 207 EDTLKYGIESMLKHYVEEVEEVIQI 231 >gi|254582903|ref|XP_002499183.1| ZYRO0E05830p [Zygosaccharomyces rouxii] gi|238942757|emb|CAR30928.1| ZYRO0E05830p [Zygosaccharomyces rouxii] Length = 254 Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 68/203 (33%), Positives = 107/203 (52%), Gaps = 15/203 (7%) Query: 1 MFIQTEDTPNPATLKFIP--GQVVLVEGA--IHFSNAKEA--EISPLASRIF-SIPGIAS 53 + I+T TPN LKFI G+++ +G+ + N+ E+ E S LA RIF PG+ S Sbjct: 25 IAIKTMTTPNENALKFISTDGEMLQDKGSSSLEIKNSDESLIEHSNLAQRIFLQCPGVES 84 Query: 54 VYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDD-----MGS 107 + G DF+TV KD W ++P V+ ++ SG+ ++ + D Sbjct: 85 LMIGDDFLTVNKDSMVHWNQIKPGVIELLTSQLASGEDVVSDEFHTIRDSDAGYEVTAPK 144 Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSAS 165 + E D V I E++ R+RPA+ DGGDI ++ Y G V+L ++GAC C S+ Sbjct: 145 FELSEEDEEVSDMIDELIQTRIRPAIQDDGGDIQYRAYDPKTGTVYLKLQGACKSCSSSE 204 Query: 166 ETLKYGVANILNHFVPEVKDIRT 188 +TLK G+ +L H+V EV ++ Sbjct: 205 DTLKAGIEGMLKHYVDEVTNVVQ 227 >gi|254566217|ref|XP_002490219.1| Protein involved in iron metabolism in mitochondria [Pichia pastoris GS115] gi|238030015|emb|CAY67938.1| Protein involved in iron metabolism in mitochondria [Pichia pastoris GS115] gi|328350616|emb|CCA37016.1| NifU-like protein 5, mitochondrial [Pichia pastoris CBS 7435] Length = 257 Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 69/211 (32%), Positives = 109/211 (51%), Gaps = 24/211 (11%) Query: 3 IQTEDTPNPATLKFIP-GQVVLVE----GAIHFSNAKEA-EISPLASRIFSIPGIASVYF 56 IQT TPN LKFI G +L I + A E SPLA ++F +PG+ S+ Sbjct: 22 IQTASTPNDNALKFITKGVRLLPPHIQKSTIEIDDLASATEKSPLALQLFKVPGVKSILI 81 Query: 57 GYDFITVGK--------DQYDWEHLRPPVLGMIMEHFISG--------DPIIHNGGLGDM 100 G DFITV K D W+ L+P ++ +I P Sbjct: 82 GDDFITVNKVDEKLSNSDHSRWQFLKPQIINVIDRSLSKSSEKKVNVLTPQFLENISNVH 141 Query: 101 KLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGAC 158 D + S + +++D V IKE+++ R+RPA+ DGGD+ F+ + GIV++ ++GAC Sbjct: 142 HDDYIVSQEPLDTDDDVTYEIKELINTRIRPAIQDDGGDVQFRRFDPDAGIVYIKLKGAC 201 Query: 159 SGCPSASETLKYGVANILNHFVPEVKDIRTV 189 C + +TLK+G+ ++L H+V EVK+++ + Sbjct: 202 KSCSLSEDTLKHGIESMLQHYVEEVKEVKAI 232 >gi|319953626|ref|YP_004164893.1| nitrogen-fixing nifu domain-containing protein [Cellulophaga algicola DSM 14237] gi|319422286|gb|ADV49395.1| nitrogen-fixing NifU domain-containing protein [Cellulophaga algicola DSM 14237] Length = 300 Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 56/191 (29%), Positives = 103/191 (53%), Gaps = 5/191 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNPA +KF+ + ++ A F N EA+ S LA ++F P + V+F ++ + Sbjct: 109 VYAESTPNPAVMKFVSNKTIVP-TAFEFKNIDEAKDSELAKKLFHFPFVKEVFFDENYAS 167 Query: 63 VGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 V K + DW + + +I G ++ + K + + + ++I Sbjct: 168 VTKYEVADWNEVTFDIRELIRNFIADGLEVVSAESVVKKKAEAPKTQLQDANLDDTSKKI 227 Query: 122 KEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 ++L+ V+PAVA DGG+I+FK Y V + ++GACSGCPS++ TLK G+ ++L + Sbjct: 228 IDILEEYVKPAVASDGGNIMFKSYDKETKTVNVILQGACSGCPSSTYTLKNGIESMLKNM 287 Query: 180 VPE-VKDIRTV 189 + + V+++ + Sbjct: 288 MADHVENVVAI 298 Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I +T NPA LKF + + + EA+ SPLA ++F +P + +VY +FI Sbjct: 6 ITIVETNNPAILKFDTNHFITKSNNYEYKDIDEAKNSPLAQQLFYLPFVKTVYISANFIA 65 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGG 96 + + +W+ ++ V ++E+ SG+P+I Sbjct: 66 LERFSIVEWDDVKDEVAQQLVEYLNSGEPVIFEDK 100 >gi|328350796|emb|CCA37196.1| NifU-like protein 5, mitochondrial [Pichia pastoris CBS 7435] Length = 210 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 62/179 (34%), Positives = 100/179 (55%), Gaps = 11/179 (6%) Query: 14 LKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITV-GKDQYDWEH 72 +K +P + I F N ++A SPLA ++F I G+ ++ G+DFITV K Q DW Sbjct: 1 MKILP-----EQTTIEFLNGRQAFKSPLALKLFGIDGVKTIMIGHDFITVEKKTQDDWSL 55 Query: 73 LRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPA 132 L+P + ++ E +G P+++ D + + + VV +KE++ R+RPA Sbjct: 56 LKPEIFAVLTESLNNGTPVLNEQHQSDANDQALLEE---DDEDEVVSMVKELIFTRIRPA 112 Query: 133 VARDGGDIVFK--GYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 + DGGDI F Y G V+L +RGAC C S+S TLK G+ ++L H++ EV+ + + Sbjct: 113 IQDDGGDIEFVRFEYETGTVYLRLRGACRSCSSSSITLKNGIESMLKHYIEEVEAVEQI 171 >gi|322492565|emb|CBZ27842.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 281 Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 62/192 (32%), Positives = 105/192 (54%), Gaps = 4/192 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL--VEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 + ++T +TPNP ++F + E ++ + +A SPLA +F + G+ +V+ Sbjct: 63 IVVETNETPNPDCIRFFSMDISFLKPEFSVDIPSPAQAYKSPLAEALFGVAGVQAVFLAD 122 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 +++TV K Q DW L P + +I+E S + ++ G ++ L + E D V Sbjct: 123 EYVTVRKHPQEDWAALMPIIKEVIVEFAESKENVLSAAGEEEL-LGYNNDTEPDEDDDEV 181 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +KE+L R+RP + DGG++ F +G VFL + GAC CPS+ TLK G+ +L Sbjct: 182 VLAVKELLATRIRPMLRADGGNVRFIDMDEGTVFLLLEGACKSCPSSHITLKSGIERMLM 241 Query: 178 HFVPEVKDIRTV 189 H++PEV + + V Sbjct: 242 HWIPEVVEAQEV 253 >gi|88802135|ref|ZP_01117663.1| NifU protein [Polaribacter irgensii 23-P] gi|88782793|gb|EAR13970.1| NifU protein [Polaribacter irgensii 23-P] Length = 301 Score = 190 bits (483), Expect = 8e-47, Method: Composition-based stats. Identities = 61/192 (31%), Positives = 102/192 (53%), Gaps = 6/192 (3%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYDFI 61 + E TPNPA +KF + L + + F N EA SPLA IF+ P + V+ ++I Sbjct: 109 VYAEVTPNPAVMKFGTNKA-LTQTDVEFKNIDEASASSPLAQAIFNFPFVQQVFISDNYI 167 Query: 62 TVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +V K D +W + V I E+ G II ++ + + + + Sbjct: 168 SVTKYDMVEWNEVYGEVRTFIREYLADGKTIIKELPKEEVVETANKAQEPEVVLEGISAQ 227 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNH 178 I ++LD ++PAVA DGG+I F+ Y + +V + ++GACSGCPS++ TLK G+ N+L Sbjct: 228 IVDILDEYIKPAVASDGGNIAFRSYDEQTKVVRVILQGACSGCPSSTATLKNGIENLLKE 287 Query: 179 FVPE-VKDIRTV 189 +P+ + ++ + Sbjct: 288 MLPDQINEVVAI 299 Score = 74.4 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 51/107 (47%), Gaps = 1/107 (0%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I ++T N +K+ +++ G+ F+N EA+ SPLA +F +P + V+ +FI Sbjct: 6 ITIQETTNNTIIKYNSNTILINGGSYEFNNIDEAKNSPLAQELFYLPFVKKVFITANFIA 65 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG 108 + + D +W ++ V I G+ +++ + ++ + Sbjct: 66 IQRFDILEWIDVQEEVKEQIEAFLNDGNIVVNEQKTSKKEAIEVYAE 112 >gi|295132490|ref|YP_003583166.1| nifU related protein [Zunongwangia profunda SM-A87] gi|294980505|gb|ADF50970.1| nifU related protein [Zunongwangia profunda SM-A87] Length = 309 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 57/200 (28%), Positives = 97/200 (48%), Gaps = 14/200 (7%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNP +KF+ + LV A F N +A SPLA ++F P + V+ ++++ Sbjct: 109 VYAESTPNPKVMKFVANRK-LVLHAAEFKNIDDAAESPLAQKLFHFPFVKEVFIDENYVS 167 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD---------FIE 112 + K D W+ + + I G+ +++N + GS I+ Sbjct: 168 INKYDVASWDEITMELREFIRNFIQEGNSVLNNDAITGAPEGKNGSETSKTAPKPQINID 227 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKY 170 Q++ +L+ ++PAVA DGG+I+F Y V + ++GACSGCPS++ TLK Sbjct: 228 ELDDTSQQVVAILEEYIKPAVASDGGNILFDSYNEESRTVKVILQGACSGCPSSTMTLKS 287 Query: 171 GVANILNHFVPE-VKDIRTV 189 G+ +L + V + V Sbjct: 288 GIETMLRDMLKGKVDYVEAV 307 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 1/98 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I + T P +KF + + F N EA SP+A ++F +P + +VY +FI Sbjct: 6 INIQHTTQPEIVKFEANKFLTKHENFEFKNIDEAAKSPIAQQLFYLPFVKTVYISQNFIA 65 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGD 99 + K D W + V I + G +I Sbjct: 66 IEKYDIVAWPEVENEVAEQIQNYLNKGGIVIKTDEQQK 103 >gi|50312363|ref|XP_456215.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49645351|emb|CAG98923.1| KLLA0F25476p [Kluyveromyces lactis] Length = 256 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 112/205 (54%), Gaps = 16/205 (7%) Query: 1 MFIQTEDTPNPATLKFIP--GQVVLVEGA--IHFSNAKEA--EISPLASRIFS-IPGIAS 53 + I+T TPN LKF+ G ++ +G + N E + +P S++F PG+ + Sbjct: 28 IHIKTLTTPNENALKFVSTDGGLLQEKGTQSVEIKNTDEELLKHAPFPSKVFQQCPGVEA 87 Query: 54 VYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG---- 108 + G DF+T+ KD+ W + P V+ ++++H SG P K ++G Sbjct: 88 MMIGDDFVTINKDELIHWNQVTPTVIDLLVQHLASGKPTFLPDFFDVKKSSEVGYDVDIP 147 Query: 109 --DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSA 164 ++ E + + + I E++ R+RPA+ DGGDI ++G+ G V+L ++GAC C S+ Sbjct: 148 KFEYDEDEQEISEMIDELIQTRIRPAIMDDGGDIQYRGWNPETGTVYLKLQGACKSCSSS 207 Query: 165 SETLKYGVANILNHFVPEVKDIRTV 189 +TLK+G+ +L H++ EV+D+ + Sbjct: 208 EDTLKHGIEAMLKHYIEEVEDVVQI 232 >gi|126663121|ref|ZP_01734119.1| thioredoxin-related protein [Flavobacteria bacterium BAL38] gi|126624779|gb|EAZ95469.1| thioredoxin-related protein [Flavobacteria bacterium BAL38] Length = 299 Score = 188 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 101/191 (52%), Gaps = 5/191 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNP+ LKF+ + +L + A+ N E SPLA +F P + ++ ++I+ Sbjct: 108 VYAETTPNPSVLKFVCNK-LLTKTALECKNIDETIASPLAKELFKFPFVKEIFIDENYIS 166 Query: 63 VGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 V K +W+ + + I E+ +G+ +I + ++ + ++ Q+I Sbjct: 167 VTKFAVTEWDEITLELRTFIKEYIENGNTVIDETAIVKTEIHQKQQEAYFDTLDVTSQQI 226 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +++ V+PAV DGG+I+F+ + + V + ++GACSGCPS++ TLK G+ N+L Sbjct: 227 INIIEEYVKPAVQSDGGNIMFESFDPIEKRVKVILQGACSGCPSSTFTLKNGIENMLKDM 286 Query: 180 V-PEVKDIRTV 189 + E + + Sbjct: 287 LKDENIKVEAI 297 Score = 74.8 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 1/116 (0%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I T+ T NPA +KF + ++ F N E + SPLA ++F +P + +VY +FI Sbjct: 4 IATKITQNPAIVKFELDENIVRSENFEFKNIDETQNSPLAKQLFFLPFVKTVYVSGNFIA 63 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 + K +WE ++ V I E +G II K + + S + Sbjct: 64 IEKFSIVEWEDVQEDVANQINEFISNGGEIIKIDENKTKKQPVTVYAETTPNPSVL 119 >gi|157870953|ref|XP_001684026.1| hypothetical protein [Leishmania major strain Friedlin] gi|68127094|emb|CAJ04535.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 240 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 61/192 (31%), Positives = 106/192 (55%), Gaps = 4/192 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVL--VEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 + ++T +TPNP ++F + E ++ ++ +A SPLA +F + G+ +V+ Sbjct: 22 IVVETNETPNPDCMRFFSMDLSFLKPEFSMDITSPAQAYKSPLAEALFGVAGVQAVFLAD 81 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 +++TV K Q DW L P + +I+E S + ++ G ++ L + E D V Sbjct: 82 EYVTVRKHPQADWAALIPIIKEVIVEFAESKENVLSAAGEEEL-LGYNNDTEPDEDDDEV 140 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +KE+L R+RP + DGG++ F +G VFL + G+C CPS+ TLK G+ +L Sbjct: 141 VLAVKELLATRIRPMLRADGGNVRFIDMDEGTVFLLLEGSCKSCPSSHITLKSGIERMLM 200 Query: 178 HFVPEVKDIRTV 189 H++PEV + + V Sbjct: 201 HWIPEVVEAQEV 212 >gi|150026140|ref|YP_001296966.1| hypothetical protein FP2102 [Flavobacterium psychrophilum JIP02/86] gi|149772681|emb|CAL44164.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86] Length = 298 Score = 187 bits (475), Expect = 7e-46, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 98/191 (51%), Gaps = 7/191 (3%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNPA +KF+ + L + + N + SPLA +F P + ++ ++++ Sbjct: 107 VYAESTPNPAVMKFVASKK-LTKTIVECKNIDQTHASPLAKELFKFPFVKEIFIDENYLS 165 Query: 63 VGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 + K +W+ + + I E +G ++ + K ++ ++ Q+I Sbjct: 166 ITKYAVAEWQEITLELRTFIKEFIENGKIVVDETKIVATKHEEKQEITNFDNLDVTSQKI 225 Query: 122 KEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +++ +RPAVA DGG+I+F Y V + ++GACSGCPS++ TLK G+ ++L Sbjct: 226 INIIEEYIRPAVAADGGNILFDSYCQDTKQVKVILQGACSGCPSSTFTLKNGIESMLKDM 285 Query: 180 V--PEVKDIRT 188 + PE++ + Sbjct: 286 LNQPELR-VEA 295 Score = 77.9 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 1/99 (1%) Query: 2 FIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 I +DT NP LKF + + + N EA SPLA ++F +P + +VY +FI Sbjct: 3 LITIKDTNNPNILKFEFSYFITPNQSYEYKNIDEAGASPLAQQLFYLPFVKTVYISGNFI 62 Query: 62 TVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGD 99 + K WE ++ V + +G ++ Sbjct: 63 AIEKYNIVQWEDVKHDVADQMEAFVSNGGEVVKQTETPK 101 >gi|332877772|ref|ZP_08445513.1| NifU-like protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684352|gb|EGJ57208.1| NifU-like protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 298 Score = 187 bits (475), Expect = 7e-46, Method: Composition-based stats. Identities = 63/193 (32%), Positives = 105/193 (54%), Gaps = 8/193 (4%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFS-IPGIASVYFGYDFI 61 + TE TPNPA +KF+ + LV I + +A EA +PLA +F P I V+F D+I Sbjct: 108 LYTETTPNPAVMKFVANKR-LVPTIIEYKSATEAAEAPLAQALFQAFPFITEVFFDNDYI 166 Query: 62 TVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +V K D DWE P + I ++ + +I+ + + + + Q+ Sbjct: 167 SVTKTDTADWEEESPRLRAFIKDYLAAEKTVINISEVKKWQTAVQAHLLSKVTTDPISQQ 226 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETLKYGVANILNH 178 I +++ V+PAVA DGG+I F Y+ V + ++GACSGCPS+++TLK G+ IL + Sbjct: 227 IVAIIEEHVKPAVASDGGNIQFISYQPDTHHVEVLLQGACSGCPSSTQTLKKGIEAILKN 286 Query: 179 FV--PEVKDIRTV 189 + P++ ++ + Sbjct: 287 KLGNPDI-NVEAI 298 Score = 74.4 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 2/93 (2%) Query: 5 TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVG 64 + T NP +K + LV+G+ + N EA+ +PLA +F +P I +VY +FI + Sbjct: 8 VQPTANPDIIKLEANRP-LVKGSYEYKNVDEAKNAPLAKELFYLPFIKTVYISSNFIALK 66 Query: 65 K-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGG 96 + +W+ ++ V I + SG P+++N Sbjct: 67 RFPIIEWKDVQEEVAQQIAVYLQSGRPLVNNDS 99 >gi|227536308|ref|ZP_03966357.1| nifU domain protein [Sphingobacterium spiritivorum ATCC 33300] gi|300772344|ref|ZP_07082214.1| NifU domain protein [Sphingobacterium spiritivorum ATCC 33861] gi|227243915|gb|EEI93930.1| nifU domain protein [Sphingobacterium spiritivorum ATCC 33300] gi|300760647|gb|EFK57473.1| NifU domain protein [Sphingobacterium spiritivorum ATCC 33861] Length = 184 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 57/178 (32%), Positives = 97/178 (54%), Gaps = 12/178 (6%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + TE TPNPAT+KF+ + +L+ G++ + N ++A+ SP A +F + V+F +F+T Sbjct: 6 VYTESTPNPATMKFLVNK-LLINGSLDYPNKEKAQESPFAFELFKFNFVTGVFFASNFVT 64 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 + K D +W + + + S + D + + V +I Sbjct: 65 ITKSDDVEWSDIEAILKDFVKGAVESELAVKEVHHDEDTNFEG----------TEVEVKI 114 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 ++VL + VRPAV +DGG I +K + +GIV + +RG+CSGCPS++ TLK G+ +L Sbjct: 115 QQVLHDYVRPAVEQDGGAIHYKSFDNGIVTVELRGSCSGCPSSTITLKSGIEGLLKRM 172 >gi|149525599|ref|XP_001517848.1| PREDICTED: similar to HIRA interacting protein 5 [Ornithorhynchus anatinus] Length = 180 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 56/150 (37%), Positives = 87/150 (58%), Gaps = 9/150 (6%) Query: 42 ASRIFSIPGIASVYFGYDFITVGKD--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGD 99 + +F I G+ SV+ G DFITV K+ DW L+P + IM+ F SG P++ Sbjct: 29 SRHLFRIEGVKSVFLGPDFITVTKENEDVDWNLLKPDIYATIMDFFASGLPVVTEEAPS- 87 Query: 100 MKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACS 159 + ES AVV I+ +L + RP V DGGD++++G+ DG+V L ++G+C+ Sbjct: 88 -----AEAARARESKDAVV-LIERLLSSMARPTVQEDGGDVIYRGFEDGVVQLKLQGSCT 141 Query: 160 GCPSASETLKYGVANILNHFVPEVKDIRTV 189 CPS+ TLK G+ N+L ++PEV+ + V Sbjct: 142 SCPSSIVTLKSGIQNMLQFYIPEVEGVEQV 171 >gi|197106639|ref|YP_002132016.1| thioredoxin-like domain protein [Phenylobacterium zucineum HLK1] gi|196480059|gb|ACG79587.1| thioredoxin-like domain protein [Phenylobacterium zucineum HLK1] Length = 233 Score = 183 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 69/194 (35%), Positives = 100/194 (51%), Gaps = 17/194 (8%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAK--EAEISPLASRIFSIPGIASVYFGY 58 M I TE TPNP KF+P L +G H + + SPLA+R+F++ + V Sbjct: 1 MLILTETTPNPEARKFLP-HARLTDGTAHAFDRTGFDPAASPLAARLFALGSVRHVLIAE 59 Query: 59 DFITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 DF+TV + D W LR + I +H SG P + G ++ S Sbjct: 60 DFVTVTRETDGEAWTTLRIKAIAEIADHLESGAPAVAAEGADPPDPEE----------SQ 109 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVAN 174 V I++VL VRP VARDGGD++F + G++++ M+GAC GCPS+ TLK G+ Sbjct: 110 VEGEIRQVLGLYVRPGVARDGGDVLFDRFEPDTGVLWIRMQGACGGCPSSRLTLKAGIEQ 169 Query: 175 ILNHFVPEVKDIRT 188 I+ +VPEV + Sbjct: 170 IVRRYVPEVLRVEE 183 >gi|254495078|ref|ZP_05108002.1| NifU-like protein [Polaribacter sp. MED152] gi|85819428|gb|EAQ40585.1| NifU-like protein [Polaribacter sp. MED152] Length = 301 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 60/192 (31%), Positives = 105/192 (54%), Gaps = 7/192 (3%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFGYDFI 61 + E TPNPA +KF + L + + + N +EA + SPLA IF+ P + V+ ++I Sbjct: 110 VYAEVTPNPAVMKFGTNKA-LTQTDVEYKNIEEASKSSPLAQAIFNFPFVKEVFISDNYI 168 Query: 62 TVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 +V K D +W + V I E+ + G II + + +E + + Sbjct: 169 SVTKYDMVEWNEVFAEVRSFIREYLVDGKTIIKDLPTVETSKTPEVVAPVVE-LEGIPAQ 227 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANILNH 178 I ++LD ++PAVA DGG+I F+ Y + +V + ++GACSGCPS++ TLK G+ ++L Sbjct: 228 ISDILDEYIKPAVAGDGGNIAFRSYDEQNKVVSVILQGACSGCPSSTATLKNGIESLLKE 287 Query: 179 FVP-EVKDIRTV 189 +P ++ ++ + Sbjct: 288 MLPNQINEVVAI 299 Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 1/116 (0%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I ++T N LKF +V++ G+ FSN EA+ SPLA ++F +P + V+ +FI Sbjct: 6 ITIQETTNETILKFNSTKVLINGGSYEFSNIDEAKNSPLAQQLFYLPFVKKVFITANFIA 65 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 + + D +W ++ V I + G+ +++ K + + + + Sbjct: 66 IQRFDIVEWADVQDEVAEQIEAYISDGNIVVNEETTSSKKEAIEVYAEVTPNPAVM 121 >gi|315223924|ref|ZP_07865769.1| nitrogen-fixing NifU domain protein [Capnocytophaga ochracea F0287] gi|314946096|gb|EFS98100.1| nitrogen-fixing NifU domain protein [Capnocytophaga ochracea F0287] Length = 299 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 97/184 (52%), Gaps = 5/184 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIF-SIPGIASVYFGYD 59 + + TE TPNP+ +KF+ + LV I + + KE + +P+A +F P I V+F + Sbjct: 105 ISVYTETTPNPSVMKFVANKR-LVPTIIEYKHIKETDEAPMAKALFTQFPFIEEVFFDDN 163 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +I+V K D +W + P + I + G +I + + + + + V Sbjct: 164 YISVTKKDNKEWAMVTPNIREFIKNYLSEGHTLISSSEIKRHQQATQERLLSMVTTDEVS 223 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++I ++D V+PAVA DGG+I F Y V + ++GACSGCPS++ TLK G+ IL Sbjct: 224 KQIVAIIDEFVKPAVASDGGNIQFISYNPETHYVEVILQGACSGCPSSTLTLKKGIEVIL 283 Query: 177 NHFV 180 + Sbjct: 284 KDKL 287 Score = 67.1 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 2/110 (1%) Query: 5 TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVG 64 + T +P +K + LV+G+ + N EA+ SPLA +F +P + +VY +FI + Sbjct: 8 VQPTSSPDIIKLEANKA-LVKGSYEYKNIDEAKNSPLAKELFYLPFVKTVYISSNFIALK 66 Query: 65 K-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIES 113 + +W+ ++ V ++ + SG I+ G + S Sbjct: 67 RFPIIEWKDVQEEVAQQVLLYLQSGREIVSTEGEQKEIISVYTETTPNPS 116 >gi|228472622|ref|ZP_04057382.1| nitrogen-fixing NifU domain protein [Capnocytophaga gingivalis ATCC 33624] gi|228276035|gb|EEK14791.1| nitrogen-fixing NifU domain protein [Capnocytophaga gingivalis ATCC 33624] Length = 299 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 14/195 (7%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E TPNP +KF+ + LV F +EAE SPLA +F + SV+F ++++ Sbjct: 111 IYVESTPNPMAMKFVANKK-LVSRPYEFKTIEEAENSPLAQALFGFDFVKSVFFDANYVS 169 Query: 63 VGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 + + WE + + ++ + G ++ + + + I S ++ Sbjct: 170 ITRLPRSTPWEEVMMETREFLRQYLMEGKTVVKVAVSEEDRPKGLPRLGDIYS-----KK 224 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETLKYGVANILNH 178 I +LD +RPAV+ DGG+I F Y V + ++GAC+GCPS+ TLK G+ +L Sbjct: 225 IVALLDQYIRPAVSSDGGNIEFVSYDKETHKVKVVLQGACNGCPSSRITLKQGIEGLLRE 284 Query: 179 FVPE----VKDIRTV 189 + + V+ + V Sbjct: 285 QLKDDKLTVEAVDNV 299 Score = 54.4 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKD-QYDWEHLRPPVLGM 80 VLV+G +S + SPLA + +P I +VYF +FI + WE + P ++G Sbjct: 21 VLVKGNYQYSKGDNTQDSPLAGELLRLPFIKTVYFSANFIALQSTGNIRWEEVAPELVGQ 80 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDM 105 I G+ +++ G + Sbjct: 81 IETALSQGEALVYLPGEETQETAPK 105 >gi|300776224|ref|ZP_07086083.1| nitrogen-fixing NifU [Chryseobacterium gleum ATCC 35910] gi|300505357|gb|EFK36496.1| nitrogen-fixing NifU [Chryseobacterium gleum ATCC 35910] Length = 292 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 9/192 (4%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFS-IPGIASVYFGYDFI 61 I E TPNP +KF+ ++++ EG + + AE PLA IF V+ +F+ Sbjct: 103 IYAEMTPNPNVMKFVSSKLLM-EGFVEVKSKDAAEEVPLAQAIFKEFDFATEVFISDNFV 161 Query: 62 TVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 V +D +W + V +I E+ +G I + K ++ + Q+ Sbjct: 162 AVTRDNSVEWHQVMMTVRALIAEYLQNGGEI---SKIEPQKHENPVEKIINRDYTEDEQK 218 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 I ++L+ V PAV DGG I Y + + ++GACSGCPS++ TLK G+ NIL Sbjct: 219 ISDILNEYVAPAVENDGGKISLMEYDQENKTAKMLLQGACSGCPSSTATLKNGIENILKQ 278 Query: 179 FVPE-VKDIRTV 189 FVP+ V+ + V Sbjct: 279 FVPDLVEKVEAV 290 Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 5 TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVG 64 E T NP +KF+ L+ G++ + PLA +F+ P + ++ +F+ V Sbjct: 6 IEPTENPKVMKFVADYN-LIPGSLELDRNSDISEIPLAQELFNYPFVERIFITANFVAVA 64 Query: 65 K-DQYDWEHLRPPVLGMIMEHFISG 88 K D +WEH+ + +I + ++ Sbjct: 65 KQDTVEWEHVAESLKNVIEDELLAN 89 >gi|322827929|gb|EFZ31905.1| hypothetical protein TCSYLVIO_1772 [Trypanosoma cruzi] Length = 261 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 63/198 (31%), Positives = 96/198 (48%), Gaps = 13/198 (6%) Query: 1 MFIQTEDTPNPATLKF-IPGQV----VLVEGAIHFSNAKEAEISPLASRIFSIPG--IAS 53 M + TPNP L F IP + ++ A + PL++ IF G +AS Sbjct: 11 MQLHAAPTPNPLCLAFHIPSSTYDGFIPNGQTCEVAHRGLAWVHPLSNGIFEQYGQEVAS 70 Query: 54 VYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE 112 V+ +++ DW L + I + + + + + DD+ E Sbjct: 71 VFIAPRHVSITVYPNVDWSTLEWSISSFIGHYLLFVNECVPAAKEYTLMEDDL---RIHE 127 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKY 170 DS V+Q IKE+L +VRP V RDGGD+ + D G+V L+M GAC CPS+S TLK Sbjct: 128 EDSEVLQCIKELLREQVRPMVQRDGGDVKLLNFNDETGVVSLAMLGACRTCPSSSNTLKD 187 Query: 171 GVANILNHFVPEVKDIRT 188 G+ ++ HF+PEV ++ Sbjct: 188 GIERVMKHFLPEVTEVVE 205 >gi|325955388|ref|YP_004239048.1| nitrogen-fixing NifU domain-containing protein [Weeksella virosa DSM 16922] gi|323438006|gb|ADX68470.1| nitrogen-fixing NifU domain-containing protein [Weeksella virosa DSM 16922] Length = 295 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 57/192 (29%), Positives = 104/192 (54%), Gaps = 6/192 (3%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFS-IPGIASVYFGYDFI 61 + E TPNPA +KF+ + +LV I + ++A+ P+A+ IF P I V+ ++I Sbjct: 103 LYAEMTPNPAVMKFVSNK-LLVPSIIEIKSREKAQNVPIATAIFQEYPFIEEVFIAENYI 161 Query: 62 TVGKDQYD-WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ++ K+ + W+ V ++ + + I ++ ++ + IE + V Q+ Sbjct: 162 SLTKNDTESWDLWTMDVRSFVLSYLQTDGKIFNDDYEFVTEIPHEVAIKSIEEMTDVEQQ 221 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNH 178 IK +LD V+PAVA DGG+I + + + ++GACSGCPS++ TLK+G+ +L Sbjct: 222 IKAILDEYVQPAVANDGGNIELIEFDEQTKTAKMLLQGACSGCPSSTATLKHGIEGLLKQ 281 Query: 179 FVPEVK-DIRTV 189 +PEV ++ + Sbjct: 282 MLPEVVNNVEAI 293 Score = 79.1 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 4/86 (4%) Query: 3 IQTEDTPNPATLKFI-PGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 I TE+TPNP LKF+ P Q L G + + AE SPLA + + P I V+ +F+ Sbjct: 4 IYTENTPNPNILKFVCPTQ--LTAGGVEYKKDDSAENSPLAQVLLTFPFIDKVFITANFV 61 Query: 62 TVGK-DQYDWEHLRPPVLGMIMEHFI 86 + K D WE + ++ +I EH+ Sbjct: 62 ALEKIDTIKWEDVSDDLIEIIQEHYD 87 >gi|89889561|ref|ZP_01201072.1| thioredoxin containing NifU domain [Flavobacteria bacterium BBFL7] gi|89517834|gb|EAS20490.1| thioredoxin containing NifU domain [Flavobacteria bacterium BBFL7] Length = 214 Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 100/193 (51%), Gaps = 7/193 (3%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNP+ +KF+ + ++V F + + + LA ++++ P + +Y ++++ Sbjct: 21 VYAEATPNPSVMKFVANKKLVVNST-EFKSIADTADNTLARQLYNFPFVKEIYADENYVS 79 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI--ESDSAVVQ 119 + K D W+ + + I E +G I + + + + E+ V + Sbjct: 80 IQKHDIASWDEVTFEIRSFIKEAIENGAEIGSSKHEAGTVKKEGENIELPKFENLDDVSK 139 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETLKYGVANILN 177 ++ E+LD ++PAVA DGG+IVF Y + V + ++GACSGCPS++ TLK G+ +L Sbjct: 140 KVVEILDEYIKPAVASDGGNIVFDSYDENTKEVKVILQGACSGCPSSTMTLKSGIETMLR 199 Query: 178 HFVPE-VKDIRTV 189 +P V + + Sbjct: 200 DMLPGKVDRVMAI 212 >gi|256820781|ref|YP_003142060.1| nitrogen-fixing NifU domain-containing protein [Capnocytophaga ochracea DSM 7271] gi|256582364|gb|ACU93499.1| nitrogen-fixing NifU domain protein [Capnocytophaga ochracea DSM 7271] Length = 299 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 5/184 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIF-SIPGIASVYFGYD 59 + + TE TPNP+ +KF+ + LV I + + +E + +P+A +F P I V+F + Sbjct: 105 ISVYTETTPNPSVMKFVANKR-LVPTIIEYKHIEETDEAPMAKALFTQFPFIEEVFFDDN 163 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +I+V K D +W + + I + G +I + + + + + V Sbjct: 164 YISVTKKDNKEWAMVTSNIREFIKNYLSEGHILISSSEIKRHQQATQERLLSMVTTDEVS 223 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++I ++D V+PAVA DGG+I F Y V + ++GACSGCPS++ TLK G+ IL Sbjct: 224 KQIIAIIDEFVKPAVASDGGNIQFISYNPETHYVEVILQGACSGCPSSTLTLKKGIEVIL 283 Query: 177 NHFV 180 + Sbjct: 284 KDKL 287 Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 2/110 (1%) Query: 5 TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVG 64 + T +P +K + LV+G+ + N EA+ SPLA +F +P + +VY +FI + Sbjct: 8 VQPTSSPDIIKLEANKA-LVKGSYEYKNIDEAKNSPLAKELFYLPFVKTVYISSNFIALK 66 Query: 65 K-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIES 113 + +W+ ++ V ++ + SG I+ G + S Sbjct: 67 RFPIIEWKDVQEEVAQQVLLYLQSGREIVSTEGEQKKVISVYTETTPNPS 116 >gi|71666135|ref|XP_820030.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70885357|gb|EAN98179.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 261 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 62/198 (31%), Positives = 95/198 (47%), Gaps = 13/198 (6%) Query: 1 MFIQTEDTPNPATLKF-IPGQV----VLVEGAIHFSNAKEAEISPLASRIFSIPG--IAS 53 M + TPNP L F IP + ++ A + PL++ IF G +AS Sbjct: 11 MQLHAAPTPNPLCLAFHIPSSTYDGFIPNGQTCEVAHRGLAWVHPLSNGIFEQYGQEVAS 70 Query: 54 VYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE 112 V+ +++ DW L + I + + + + + DD+ E Sbjct: 71 VFIAPRHVSITVYPNVDWSTLEWSISSFIGHYLLFVNECVPAAKEYTLMEDDL---RIHE 127 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKY 170 DS V+Q IKE+L +VRP V RDGGD+ + G+V L+M GAC CPS+S TLK Sbjct: 128 EDSEVLQCIKELLREQVRPMVQRDGGDVKLLNFNEETGVVSLAMLGACRTCPSSSNTLKD 187 Query: 171 GVANILNHFVPEVKDIRT 188 G+ ++ HF+PEV ++ Sbjct: 188 GIERVMKHFLPEVTEVVE 205 >gi|320584117|gb|EFW98328.1| hypothetical protein HPODL_0008 [Pichia angusta DL-1] Length = 250 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 63/202 (31%), Positives = 108/202 (53%), Gaps = 18/202 (8%) Query: 3 IQTEDTPNPATLKFIPGQ----VVLVEGAIHFSNAKEA-EISPLASRIFSIPGIASVYFG 57 ++T TPN LKFI + A+ ++ EA + SPLAS +F + G+ S+ G Sbjct: 26 LKTVGTPNENALKFISTDFNFLPESLTSAVEVNDLPEASQRSPLASELFKLNGVKSLLIG 85 Query: 58 YDFITVGKDQYD--------WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD 109 ++FITV K + W+ L V+ +I S P+++ L ++ + + Sbjct: 86 HNFITVNKVDPELSNNPDLHWDSLSTKVMNVITNAVDSNIPVLNPEYLDEIVRKQDEAQE 145 Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASET 167 V IKE+++ R+RPA+ DGGDI F+ + G V+L ++GAC C + +T Sbjct: 146 DD---DDVTYEIKELINTRIRPALQDDGGDIHFRSFDAESGTVYLKLQGACKSCSLSEDT 202 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 LK G+ ++L H++PEV++++ V Sbjct: 203 LKNGIESMLKHYIPEVEEVKAV 224 >gi|8118105|gb|AAF72894.1|AF228511_2 NU1 [Trypanosoma cruzi] Length = 261 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 61/198 (30%), Positives = 95/198 (47%), Gaps = 13/198 (6%) Query: 1 MFIQTEDTPNPATLKF-IPGQV----VLVEGAIHFSNAKEAEISPLASRIFSIPG--IAS 53 M + TPNP L F IP + ++ A + PL++ IF G +AS Sbjct: 11 MQLHAAPTPNPLCLAFHIPSSTYDGFIPNGQTCEVAHRGLAWVHPLSNGIFEQYGQEVAS 70 Query: 54 VYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE 112 V+ +++ +W L + I + + + + + DD+ E Sbjct: 71 VFIAPRHVSITVYPNVEWSKLEWSISSFIGHYLLFVNECVPAAKEYTLMEDDL---RIHE 127 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKY 170 DS V+Q IKE+L +VRP V RDGGD+ + G+V L+M GAC CPS+S TLK Sbjct: 128 EDSEVLQCIKELLREQVRPMVQRDGGDVKLLNFNEETGVVSLAMLGACRTCPSSSNTLKD 187 Query: 171 GVANILNHFVPEVKDIRT 188 G+ ++ HF+PEV ++ Sbjct: 188 GIERVMKHFLPEVTEVVE 205 >gi|313206892|ref|YP_004046069.1| nitrogen-fixing nifu domain protein [Riemerella anatipestifer DSM 15868] gi|312446208|gb|ADQ82563.1| nitrogen-fixing NifU domain protein [Riemerella anatipestifer DSM 15868] Length = 292 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 59/192 (30%), Positives = 94/192 (48%), Gaps = 9/192 (4%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFS-IPGIASVYFGYDFI 61 I E TPNP+ +KF+ + +L+EG + + +EA PLA IF V+ +F+ Sbjct: 103 IYAEMTPNPSVMKFVASR-LLLEGFVEVKSREEAAEVPLAQAIFKEFDFAQEVFISDNFV 161 Query: 62 TVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 V KD W + I E+ +G + H K ++ + Q+ Sbjct: 162 AVTKDDSVQWHEVMVVTRAFIAEYLQNGGEVSHKEP---QKHENPVEKIINREYTDTEQK 218 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETLKYGVANILNH 178 I ++L+ V PAV DGG I Y + + ++GACSGCPS++ TLK G+ N+L Sbjct: 219 ISDILNEYVAPAVENDGGKISLMEYDESTKTAKMLLQGACSGCPSSTATLKGGIENVLKQ 278 Query: 179 FVPE-VKDIRTV 189 F+P+ V+ + V Sbjct: 279 FLPDLVEKVEAV 290 Score = 67.5 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 2/87 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E T NP +KF+ L+ G++ + PLA +F+ P + ++ +FI Sbjct: 4 IIIEATENPRVMKFVADYN-LIPGSLELDRNSDISEIPLAQELFNYPFVDKIFITANFIA 62 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISG 88 V K D +WEH+ + +I + ++ Sbjct: 63 VAKQDTVEWEHVVQSLKNVIEDELLAN 89 >gi|326334857|ref|ZP_08201058.1| nitrogen-fixing NifU domain protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692894|gb|EGD34832.1| nitrogen-fixing NifU domain protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 295 Score = 178 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 57/180 (31%), Positives = 97/180 (53%), Gaps = 9/180 (5%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E TPNP +KF+ + LV + +A+EA SPLA+ +F P + V+F ++I+ Sbjct: 110 IYVESTPNPMAMKFVANKK-LVSRVYEYKSAQEAAESPLAAALFKFPYVKEVFFDSNYIS 168 Query: 63 V-GKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 V + + WE + + I ++ ++G P++ + + + + I S ++I Sbjct: 169 VIRQPKILWEEVMMELREFIRQYLMAGKPVVRVIVEDGDRPKGLPTLNDIYS-----RKI 223 Query: 122 KEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +LD ++PAV+ DGG+I F Y +V + M+GAC+GCPS+ TLK G+ IL Sbjct: 224 IAILDQYIKPAVSSDGGNIQFVSYDKESQVVKVLMQGACNGCPSSKLTLKQGIEAILREK 283 Score = 65.6 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 2/101 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M + + T NPA +K + V+LV+G+ F+ ++AE SPLA + +IP I +V+ +F Sbjct: 1 MRLDIQRTTNPAIIK-LEAPVILVKGSYQFTTEEQAENSPLAKELLAIPFIKTVFISANF 59 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDM 100 I + +W+ + V + + G PI+ + + Sbjct: 60 IALEALPIVEWDDVAQEVALQVEAYLRRGAPILIDNIPEEA 100 >gi|90076830|dbj|BAE88095.1| unnamed protein product [Macaca fascicularis] Length = 199 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 57/132 (43%), Positives = 74/132 (56%), Gaps = 10/132 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT++TPNP +LKFIPG+ VL + F A SPLA ++F I G+ SV+FG DF Sbjct: 59 MFIQTQNTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDF 118 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K + DW L+P + IM+ F SG P++ E D VV Sbjct: 119 ITVTKENEDLDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAG--------SEEDDEVV 170 Query: 119 QRIKEVLDNRVR 130 IKE+LD R+R Sbjct: 171 AMIKELLDTRIR 182 >gi|213962175|ref|ZP_03390439.1| nitrogen-fixing NifU domain protein [Capnocytophaga sputigena Capno] gi|213955181|gb|EEB66499.1| nitrogen-fixing NifU domain protein [Capnocytophaga sputigena Capno] Length = 300 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 56/184 (30%), Positives = 99/184 (53%), Gaps = 5/184 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIF-SIPGIASVYFGYD 59 + + TE TPNP +KF+ + LV I + + +EA +P+A+ + P I V+F + Sbjct: 107 ITVYTETTPNPTVMKFVANKR-LVPTVIEYKSIEEATEAPMAATLLTRFPFIEEVFFDDN 165 Query: 60 FITVGKDQYD-WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +I++ K + WE + + I ++ G PII+ + + + + + + Sbjct: 166 YISLTKKGMEEWEMIAADLRDYIRKYLSEGRPIINPSEIKRRQEEAQARLLSMVTTDEIS 225 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETLKYGVANIL 176 Q+I +++ V+PAVA DGG+I F Y V + ++GACSGCPS+++TLK G+ IL Sbjct: 226 QQIVAIIEQYVKPAVASDGGNIQFISYNRDTHHVEVLLQGACSGCPSSTQTLKKGIEVIL 285 Query: 177 NHFV 180 + Sbjct: 286 KDKL 289 Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 12/148 (8%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ + T NP +K + LV+G+ F N EA+ +PLA +F +P + +VY +FI Sbjct: 6 LKIQPTANPDIIKLEANRP-LVKGSYEFKNIDEAKNAPLAKELFYLPFVKTVYISSNFIA 64 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 + + +W+ ++ V ++ + SG I+ M + + + + Sbjct: 65 LKRFPIVEWKEVQEEVAQQVLVYLQSGKDILLGEARKPMGEAITVYTETTPNPTVM---- 120 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGI 149 K V + R+ P V I +K + Sbjct: 121 KFVANKRLVPTV------IEYKSIEEAT 142 >gi|315023968|gb|EFT36970.1| nifU related protein [Riemerella anatipestifer RA-YM] gi|325335671|gb|ADZ11945.1| Thioredoxin-like protein [Riemerella anatipestifer RA-GD] Length = 292 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 58/192 (30%), Positives = 93/192 (48%), Gaps = 9/192 (4%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFS-IPGIASVYFGYDFI 61 I E TPNP+ +KF+ + +L++G + + +EA PLA IF V+ +F+ Sbjct: 103 IYAEMTPNPSVMKFVASR-LLLDGFVEVKSREEAAEVPLAQAIFKEFSFAQEVFISDNFV 161 Query: 62 TVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 V KD W + I E+ +G + K ++ + Q+ Sbjct: 162 AVTKDDSVQWHEVMVVTRAFIAEYLQNGGEVSQKEP---QKHENPVEKIINREYTYTEQK 218 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETLKYGVANILNH 178 I +VL+ V PAV DGG I Y + + ++GACSGCPS++ TLK G+ N+L Sbjct: 219 ISDVLNEYVAPAVENDGGKISLMEYDESTKTAKMLLQGACSGCPSSTATLKGGIENVLKQ 278 Query: 179 FVPE-VKDIRTV 189 F+P+ V+ + V Sbjct: 279 FLPDLVEKVEAV 290 Score = 67.9 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 2/87 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E T NP +KF+ L+ G++ + PLA +F+ P + ++ +FI Sbjct: 4 IIIEATENPRVMKFVADYN-LIPGSLELDRNSDISEIPLAQELFNYPFVDKIFITANFIA 62 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISG 88 V K D +WEH+ + +I + ++ Sbjct: 63 VAKQDTVEWEHVVQSLKNVIEDELLAN 89 >gi|297266190|ref|XP_001096379.2| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like [Macaca mulatta] Length = 196 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 63/186 (33%), Positives = 90/186 (48%), Gaps = 36/186 (19%) Query: 10 NPATLKFIP----GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 NP T+K P Q L F N +ISPL + I G+ SV+FG DFITV K Sbjct: 28 NPYTIKKQPLHQFVQRPLFPLPAAFCNP--GKISPLLKQ---IEGVKSVFFGPDFITVTK 82 Query: 66 D--QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKE 123 + DW L+P + IM+ F SG P++ Sbjct: 83 ENEDLDWNLLKPDIYATIMDFFASGLPLVTEETPSGEA---------------------- 120 Query: 124 VLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEV 183 + P V DGGD+++KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L ++PEV Sbjct: 121 ---GNMLPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFYIPEV 177 Query: 184 KDIRTV 189 + + V Sbjct: 178 EGVEQV 183 >gi|261332565|emb|CBH15560.1| HIRA-interacting protein 5, putative [Trypanosoma brucei gambiense DAL972] Length = 261 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 61/198 (30%), Positives = 93/198 (46%), Gaps = 13/198 (6%) Query: 1 MFIQTEDTPNPATLKF-IPGQV----VLVEGAIHFSNAKEAEISPLASRIFSI--PGIAS 53 M + + TPNP+ F IP + ++ A + PL+ IF +AS Sbjct: 11 MQLHSLPTPNPSCYTFHIPSSTYDNFIPDGQTCDVAHMSLAWVHPLSQGIFEQYPQEVAS 70 Query: 54 VYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE 112 V+ ++ DW L + I + + + + DD+ E Sbjct: 71 VFIAPRHTSITVHPHVDWNKLEWSISSFIGHYLVFTNACFPAAAEYALLEDDLV---IHE 127 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKY 170 DS V+Q IKE++ +VRP V RDGGD+ + + G+V L+M GAC CPS+ TLK Sbjct: 128 DDSEVLQCIKELVRGQVRPMVQRDGGDVKLLNFNEKTGVVSLAMLGACRTCPSSQNTLKD 187 Query: 171 GVANILNHFVPEVKDIRT 188 GV +L HF+PEVK++ Sbjct: 188 GVERLLKHFLPEVKEVVE 205 >gi|255534458|ref|YP_003094829.1| nifU related protein [Flavobacteriaceae bacterium 3519-10] gi|255340654|gb|ACU06767.1| nifU related protein [Flavobacteriaceae bacterium 3519-10] Length = 292 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 61/193 (31%), Positives = 95/193 (49%), Gaps = 9/193 (4%) Query: 2 FIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFS-IPGIASVYFGYDF 60 I +E TPNP +KF+ +L +G + + EA PLA IF ++ +F Sbjct: 102 LIYSEMTPNPMVMKFVSSTELL-DGFVEVKSPAEAGEVPLAKAIFDEFGFAKEIFISGNF 160 Query: 61 ITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 + V K+ +W + + I + +G I + + K + +A Q Sbjct: 161 VAVTKNVSVEWHEVMITMRDFIANYLQNGGAISN---IATQKHETPVESSIQRDYTANEQ 217 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILN 177 +I ++LD V PAVA DGG I Y + + ++GACSGCPS++ TLK G+ NIL Sbjct: 218 KISDILDEYVAPAVAGDGGKISLIEYDEASKTAKMLLQGACSGCPSSTATLKGGIENILK 277 Query: 178 HFVPE-VKDIRTV 189 FVPE V+++ V Sbjct: 278 QFVPELVENVEAV 290 Score = 67.9 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E T NP LKF+ +L G++ + PLA ++ + P + ++ +FI Sbjct: 4 ILIEATENPKVLKFVADYNLLP-GSLELDRQSDISEIPLAQKLLNFPFVDRIFITANFIA 62 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISG 88 V K D +WE + + +I + I+ Sbjct: 63 VAKQDTVEWEFVADSLKNVIEDELIAN 89 >gi|323332794|gb|EGA74199.1| Nfu1p [Saccharomyces cerevisiae AWRI796] Length = 224 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 61/194 (31%), Positives = 105/194 (54%), Gaps = 17/194 (8%) Query: 13 TLKFIP--GQVVLVEGAIHF--SNAKE--AEISPLASRIF-SIPGIASVYFGYDFITVGK 65 LKF+ G+++ G+ N E S LA +IF PG+ S+ G DF+T+ K Sbjct: 2 ALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVESLMIGDDFLTINK 61 Query: 66 D-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLD-------DMGSGDFIESDSAV 117 D W ++P ++ ++ + G+ +I + + +M + E D V Sbjct: 62 DRMVHWNSIKPEIIDLLTKQLACGEDVISKEFHAVQEEEGEGGYKINMPKFELTEEDEEV 121 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANI 175 + I+E++D R+RPA+ DGGDI ++G+ G V+L ++GAC+ C S+ TLKYG+ ++ Sbjct: 122 SELIEELIDTRIRPAILEDGGDIDYRGWDPKTGTVYLRLQGACTSCSSSEVTLKYGIESM 181 Query: 176 LNHFVPEVKDIRTV 189 L H+V EVK++ + Sbjct: 182 LKHYVDEVKEVIQI 195 >gi|71747438|ref|XP_822774.1| HIRA-interacting protein 5 [Trypanosoma brucei TREU927] gi|70832442|gb|EAN77946.1| HIRA-interacting protein 5, putative [Trypanosoma brucei] Length = 261 Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 61/198 (30%), Positives = 93/198 (46%), Gaps = 13/198 (6%) Query: 1 MFIQTEDTPNPATLKF-IPGQV----VLVEGAIHFSNAKEAEISPLASRIFSI--PGIAS 53 M + + TPNP+ F IP + ++ A + PL+ IF +AS Sbjct: 11 MQLHSLPTPNPSCYTFHIPSSTYDNFIPDGQTCDVAHMGLAWVHPLSQGIFEQYPQEVAS 70 Query: 54 VYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE 112 V+ ++ DW L + I + + + + DD+ E Sbjct: 71 VFIAPRHTSITVHPHVDWNKLEWSISSFIGHYLVFTNACFPAAAEYALLEDDLV---IHE 127 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKY 170 DS V+Q IKE++ +VRP V RDGGD+ + + G+V L+M GAC CPS+ TLK Sbjct: 128 DDSEVLQCIKELVREQVRPMVQRDGGDVKLLNFNEKTGVVSLAMLGACRTCPSSQNTLKD 187 Query: 171 GVANILNHFVPEVKDIRT 188 GV +L HF+PEVK++ Sbjct: 188 GVERLLKHFLPEVKEVVE 205 >gi|316971797|gb|EFV55531.1| putative HECT-domain protein [Trichinella spiralis] Length = 626 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 63/149 (42%), Positives = 83/149 (55%), Gaps = 11/149 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M+IQ +TPNP +LKF+PG VL F N AE SPLA IF I G+ SV+FG DF Sbjct: 1 MYIQVMETPNPHSLKFLPGIPVLPGRTAEFPNRPSAENSPLARAIFRIKGVKSVFFGEDF 60 Query: 61 ITVGKDQY--DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 ITV K+ DW ++P + IM+ F S II +DD D + D+ V Sbjct: 61 ITVTKNSEVKDWVTMKPEIFSTIMDFFTSKQDII---------IDDSTEKDAADDDNDTV 111 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD 147 IK++L+ R+RP V DGGD+VF + Sbjct: 112 AMIKDLLNTRIRPTVQDDGGDVVFMVVDE 140 >gi|30249416|ref|NP_841486.1| nitrogen-fixing protein NifU [Nitrosomonas europaea ATCC 19718] gi|30138779|emb|CAD85356.1| Nitrogen-fixing protein NifU [Nitrosomonas europaea ATCC 19718] Length = 186 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 6/184 (3%) Query: 4 QTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITV 63 + E TPNP LKF+ + + A + +A++A PLA+ +F I + +V++ +IT+ Sbjct: 6 EIEGTPNPNALKFVLKEPLTWGVAKSYDHAEQAVDDPLAAALFDIDHVTNVFYVDRWITI 65 Query: 64 GKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIK 122 +D DW+ L V I P + + D E D ++RI Sbjct: 66 TQDGGADWQDLAREVADPIRA-----APAATDQSAAVVAAASRTLADLSEEDQQRLERIN 120 Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 +LD VRP + DGGD+ I+ + +GAC CPS+ G+ +L P+ Sbjct: 121 ILLDEEVRPFLQHDGGDLHVLALEGNILRIHYQGACGTCPSSISGTLRGIEQLLRTIEPD 180 Query: 183 VKDI 186 ++ + Sbjct: 181 IRVV 184 >gi|262277769|ref|ZP_06055562.1| NifU domain protein [alpha proteobacterium HIMB114] gi|262224872|gb|EEY75331.1| NifU domain protein [alpha proteobacterium HIMB114] Length = 179 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 60/188 (31%), Positives = 102/188 (54%), Gaps = 15/188 (7%) Query: 2 FIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 I DTPNP T KF+ Q ++ G+ F + ++ I L + +F I + VY +FI Sbjct: 1 MINVVDTPNPDTKKFVFDQTIVKIGSKEFKKSDQSNID-LVNDLFLIKELELVYLDKNFI 59 Query: 62 TVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ++ K+ W+ + +L + + D + + E + +R Sbjct: 60 SIKKNKDSSWDDIVQDILEALNKRISQN-------------FDALSFEEESEFTDDISKR 106 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I+EVL++++RPAVA DGGDI K ++DG+ + ++GAC+GCPS++ TLK+GV ++ H+V Sbjct: 107 IEEVLNDKIRPAVAMDGGDIRLKSFKDGVAEVMLKGACAGCPSSTVTLKHGVERMIKHYV 166 Query: 181 PEVKDIRT 188 PEV + Sbjct: 167 PEVTSVEA 174 >gi|322490669|emb|CBZ25931.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 301 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 98/196 (50%), Gaps = 13/196 (6%) Query: 1 MFIQTEDTPNPATLKF-IPG---QVVLVEG-AIHFSNAKEAEISPLASRIFSI--PGIAS 53 M + + TPNP F IP + + +G + ++ A + PL+ +F + S Sbjct: 52 MQLHAQPTPNPLCHSFTIPADSFESFVPQGQSCEVAHRGLAWVHPLSQGLFEQYSQEVMS 111 Query: 54 VYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE 112 V+ +++ +W + + + + I + I + DD+ + + Sbjct: 112 VFIAPRHVSISVYTNVEWSKIEWSISSFLGHYLIFNNTCISPAKEYTLIEDDL---ELKD 168 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKY 170 +DS V+Q IKE+L +VRP V RDGGD+ + + G+V L+M GAC CPS+ TLK Sbjct: 169 TDSEVLQCIKELLREQVRPMVQRDGGDVKLLNFNEKTGVVSLAMLGACKTCPSSQNTLKD 228 Query: 171 GVANILNHFVPEVKDI 186 G+ ++ HF+PEV ++ Sbjct: 229 GIERVMKHFLPEVTEV 244 >gi|325982994|ref|YP_004295396.1| Scaffold protein Nfu/NifU [Nitrosomonas sp. AL212] gi|325532513|gb|ADZ27234.1| Scaffold protein Nfu/NifU [Nitrosomonas sp. AL212] Length = 186 Score = 170 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 6/183 (3%) Query: 5 TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVG 64 E TPN LKFI + + A F NA+ A PLAS +F I + +V++ +ITV Sbjct: 7 IEGTPNKNALKFILKEPLTWGVARSFDNAEAARDDPLASALFDIDHVTNVFYIDHWITVT 66 Query: 65 KD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKE 123 +D + +W+ L + I + L ++ D +++I Sbjct: 67 QDGEANWQDLARDIADPIRAAPAASAQSAETVATASQALANLN-----PEDQLRLEKINI 121 Query: 124 VLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEV 183 +LD VRP + DGGD+ G I+ + +GAC CPS+ G+ N+L P++ Sbjct: 122 LLDEEVRPYLQSDGGDLHILGLEGNILHIHYQGACGTCPSSISGTLRGIENMLRTLEPDI 181 Query: 184 KDI 186 + + Sbjct: 182 QVV 184 >gi|154345572|ref|XP_001568723.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134066065|emb|CAM43852.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 260 Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 13/196 (6%) Query: 1 MFIQTEDTPNPATLKF-IPG---QVVLVEG-AIHFSNAKEAEISPLASRIFSI--PGIAS 53 M + + TPNP F IP + + +G + ++ A + PL+ +F + Sbjct: 11 MQLHAQPTPNPLCHSFSIPADSFESFVPQGQSCEVAHRGLAWVHPLSQGLFEQYPQEVMC 70 Query: 54 VYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE 112 V+ +++ DW + + + + I + + + DD+ + + Sbjct: 71 VFIAPRHVSISVYTNVDWSKIEWSISSFLGHYLIFNNACVSPAKEYTLIEDDL---ELKD 127 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKY 170 +DS V+Q IKE+L +VRP V RDGGD+ + + G+V L+M GAC CPS+ TLK Sbjct: 128 NDSEVLQCIKELLREQVRPMVQRDGGDVKLLNFNEKTGVVSLAMLGACRTCPSSQNTLKD 187 Query: 171 GVANILNHFVPEVKDI 186 G+ ++ HF+PEV ++ Sbjct: 188 GIERVMKHFLPEVTEV 203 >gi|330813331|ref|YP_004357570.1| hypothetical protein SAR11G3_00356 [Candidatus Pelagibacter sp. IMCC9063] gi|327486426|gb|AEA80831.1| hypothetical protein SAR11G3_00356 [Candidatus Pelagibacter sp. IMCC9063] Length = 179 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 99/184 (53%), Gaps = 14/184 (7%) Query: 7 DTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK- 65 DTPNP + KF+ ++ G+ + ++ + A ++F +Y +F+T+ K Sbjct: 6 DTPNPESKKFVFDFDIVKSGSKEIKSIEDCKEIKFAEKLFDQVSPELIYIDSNFVTIKKK 65 Query: 66 DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVL 125 DW ++ +L ++ E + + + E + QRI+EVL Sbjct: 66 SSQDWNEIKENILKILSE-------------EVNADFEALSFEKSFEFKDEISQRIEEVL 112 Query: 126 DNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKD 185 ++++RPAVA DGGDI K Y+DGIV + ++G+C+GCPS++ TLK GV ++ H+VPEV Sbjct: 113 NDKIRPAVAMDGGDIQLKSYKDGIVEVMLKGSCAGCPSSTVTLKQGVERMIKHYVPEVNS 172 Query: 186 IRTV 189 + V Sbjct: 173 VIAV 176 >gi|294936237|ref|XP_002781672.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] gi|239892594|gb|EER13467.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] Length = 262 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 62/195 (31%), Positives = 106/195 (54%), Gaps = 11/195 (5%) Query: 1 MFIQTEDTPNPATLKFIP--GQVVLVEGAIHFS-NAKEAEISPLASRIFSIPGIASVYFG 57 + + E TPNP+ + F G+ +L +GA S + SPLA+ +F I G+ V Sbjct: 29 IAVSAEATPNPSAMIFTLEGGKPILGKGAKSMSFEKTQCGGSPLAASLFRIHGVDKVLLA 88 Query: 58 YDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 TV K + +WE L+P V +I + F I + + ++ G +D Sbjct: 89 ARHATVTKSPETEWEMLKPNVELVISQFFD----IPNVKPVAPDTIEYTQEGQDQHNDD- 143 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVAN 174 VV+ I E+L+ R++P V RDGGD+ F + G++ + + G+C+GCP +S TLK+G+ Sbjct: 144 VVKSIHEILEQRIKPFVERDGGDVEFIAFDSDTGVLQIRLVGSCAGCPKSSVTLKFGIQR 203 Query: 175 ILNHFVPEVKDIRTV 189 ++ H++PEVK++ + Sbjct: 204 MVCHYIPEVKNVINI 218 >gi|301166538|emb|CBW26114.1| putative nitrogen fixation-related protein [Bacteriovorax marinus SJ] Length = 184 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 11/185 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 M IQ + TPNP LKFI + V EG + + + + LA +F++ G+ ++F + Sbjct: 1 MDIQIQPTPNPNALKFILDKPVKNEGNSSYKSPMDCGDNNLALTLFTVRGVDQLHFYDNV 60 Query: 61 ITVGKDQY-DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 IT+ K Y DWE + P ++ I + DP D + + S ++ Sbjct: 61 ITITKFGYEDWESMEPTIMDYINSEYPKHDP---------NYFDPDPEAERRANLSPELK 111 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN-H 178 I+ +LD +RP + DGGDI + D I+ + +GAC CPS++ + IL Sbjct: 112 EIEAILDKTIRPGLQGDGGDIQTISFEDNILLVQYQGACGTCPSSTTGTLEAIKAILRDE 171 Query: 179 FVPEV 183 + P++ Sbjct: 172 YNPDI 176 >gi|157876630|ref|XP_001686660.1| hypothetical protein [Leishmania major strain Friedlin] gi|68129735|emb|CAJ09041.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 311 Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 58/196 (29%), Positives = 97/196 (49%), Gaps = 13/196 (6%) Query: 1 MFIQTEDTPNPATLKF-IPG---QVVLVEG-AIHFSNAKEAEISPLASRIFSI--PGIAS 53 M + TPNP F IP + + +G + ++ A + PL+ +F + S Sbjct: 62 MQLHALPTPNPLCHTFTIPADSFESFVPQGQSCEVAHRGLAWVHPLSQGLFEQYPQELMS 121 Query: 54 VYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE 112 V+ +++ DW + + + + I + I + DD+ + + Sbjct: 122 VFIAPRHVSISVYTNVDWSKIEWSISSFLGHYLIFTNACISPAKEYTLMEDDL---ELKD 178 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKY 170 +D+ V+Q IKE+L +VRP V RDGGD+ + + GIV L+M GAC CPS+ TLK Sbjct: 179 TDTEVLQCIKELLREQVRPMVQRDGGDVKLLNFNEKTGIVSLAMLGACKTCPSSQNTLKD 238 Query: 171 GVANILNHFVPEVKDI 186 G+ ++ HFVPEV ++ Sbjct: 239 GIERVMKHFVPEVTEV 254 >gi|327289878|ref|XP_003229651.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like, partial [Anolis carolinensis] Length = 129 Score = 167 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 53/131 (40%), Positives = 75/131 (57%), Gaps = 9/131 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQT+DTPNP +LKFIPG+ VL + F++ SPLA ++F I G+ SV+FG DF Sbjct: 6 MFIQTQDTPNPNSLKFIPGKPVLESRTMEFTSPASTYCSPLARQLFRIEGVKSVFFGADF 65 Query: 61 ITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +TV K + DW ++P + IM+ + SG P++ + E D VV Sbjct: 66 VTVTKESEDVDWNLIKPDIYATIMDFYASGLPVVTDEAP-------RPETAPSEEDDEVV 118 Query: 119 QRIKEVLDNRV 129 IKE+LD R+ Sbjct: 119 SMIKELLDTRI 129 >gi|82701834|ref|YP_411400.1| nitrogen-fixing NifU-like [Nitrosospira multiformis ATCC 25196] gi|82409899|gb|ABB74008.1| Nitrogen-fixing NifU-like protein [Nitrosospira multiformis ATCC 25196] Length = 186 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 7/188 (3%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TPN LKFI + + + NA++A+ PLA +F I + +V++ +IT Sbjct: 5 VEIEGTPNRNALKFILKEPLTWGVTRSYDNAEQAKGDPLAEALFDIDHVTNVFYVDRWIT 64 Query: 63 VGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 V +D DW+ L V I + + D + I Sbjct: 65 VTQDGAADWQDLAREVADPIRAAPA-----ADAQTAATIAAAGAEIANLSPEDQQRLNLI 119 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP 181 E+LD +RP + DGGD+ G + + +GAC CPS+ G+ N+L P Sbjct: 120 NEMLDEEIRPYLQSDGGDLHVLGLEGNRLSVHYQGACGTCPSSITGTLRGIQNMLRSIEP 179 Query: 182 EVKDIRTV 189 ++ ++ V Sbjct: 180 DL-EVVAV 186 >gi|322503448|emb|CBZ38533.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 299 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 58/196 (29%), Positives = 98/196 (50%), Gaps = 13/196 (6%) Query: 1 MFIQTEDTPNPATLKF-IPG---QVVLVEG-AIHFSNAKEAEISPLASRIFSI--PGIAS 53 M + + TPNP F IP + + +G + ++ A + PL+ +F + S Sbjct: 50 MQLHAQRTPNPLCHSFTIPADSFESFVPQGQSCEVAHRGLAWVHPLSQGLFEQYPQELMS 109 Query: 54 VYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE 112 V+ +++ DW + + + + I + I + DD+ + + Sbjct: 110 VFIAPRHVSISVYTNVDWSKIEWSISSFLGHYLIFTNACISPAKEYTLIEDDL---ELKD 166 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKY 170 +DS V+Q IKE+L +VRP V RDGGD+ + + GIV L+M GAC CPS+ TLK Sbjct: 167 TDSEVLQCIKELLREQVRPMVQRDGGDVKLLNFNEKTGIVSLAMLGACKTCPSSQNTLKD 226 Query: 171 GVANILNHFVPEVKDI 186 G+ ++ HF+PEV ++ Sbjct: 227 GIERVMKHFLPEVTEV 242 >gi|146103241|ref|XP_001469515.1| hypothetical protein [Leishmania infantum] gi|134073885|emb|CAM72624.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 299 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 13/196 (6%) Query: 1 MFIQTEDTPNPATLKF-IPG---QVVLVEG-AIHFSNAKEAEISPLASRIFSI--PGIAS 53 M + + TPNP F IP + + +G + ++ A + PL+ +F + S Sbjct: 50 MQLHAQRTPNPLCHSFTIPADSFESFVPQGQSCEVAHRGLAWVHPLSQGLFEQYPQELMS 109 Query: 54 VYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE 112 V+ +++ DW + + + + I + I + DD+ + + Sbjct: 110 VFIAPRHVSISVYTNVDWSKIEWSISSFLGHYLIFTNACISPAKEYTLIEDDL---ELKD 166 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKY 170 SDS V+Q IKE+L +VRP V RDGGD+ + + GIV L+M GAC CPS+ TLK Sbjct: 167 SDSEVLQCIKELLREQVRPMVQRDGGDVKLLNFNEKTGIVSLAMLGACKTCPSSQNTLKD 226 Query: 171 GVANILNHFVPEVKDI 186 G+ ++ HF+PEV ++ Sbjct: 227 GIERVMKHFLPEVTEV 242 >gi|50292835|ref|XP_448850.1| hypothetical protein [Candida glabrata CBS 138] gi|49528163|emb|CAG61820.1| unnamed protein product [Candida glabrata] Length = 263 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 111/204 (54%), Gaps = 16/204 (7%) Query: 1 MFIQTEDTPNPATLKFIP--GQVVLVEGAIHF----SNAKEAEISPLASRIF-SIPGIAS 53 + IQT TPN LKF+ +++ G+ ++ S LAS+IF PG+ S Sbjct: 24 ITIQTLTTPNENALKFLNKDNELLQTRGSKSIVIKNTDQNLISHSDLASKIFAQCPGVES 83 Query: 54 VYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMG------ 106 + G DF+TV KD W ++ V+ ++ + SG +I + + ++ G Sbjct: 84 LMIGDDFLTVNKDSQVPWAQIQSDVIDLLTQQLASGKNVISDEFHAIKEDNEAGYQINEM 143 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSA 164 D E D + + I+E+++ R+RPA+ DGGDI F+G+ G V+L ++GAC+ C S+ Sbjct: 144 KFDLTEEDEEIKELIEELIETRIRPAILEDGGDIDFRGWDPESGTVYLKLQGACTSCSSS 203 Query: 165 SETLKYGVANILNHFVPEVKDIRT 188 TLKYG+ ++L H+V EVK++ Sbjct: 204 EVTLKYGIESMLKHYVDEVKEVIQ 227 >gi|149912092|ref|ZP_01900681.1| hypothetical protein PE36_11562 [Moritella sp. PE36] gi|149804829|gb|EDM64868.1| hypothetical protein PE36_11562 [Moritella sp. PE36] Length = 215 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 6/190 (3%) Query: 1 MFIQTEDT-PNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 + I+ E + +P T KFI + + G F+N + A SPL ++F++PG+A+V Sbjct: 11 ISIRAETSIADPDTCKFIVSRTLHPGGPFFFANKERAAGSPLGEQLFALPGVANVLIAES 70 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +T+ K+ W L+ + I ++G P I + D +G SD+ ++ Sbjct: 71 IVTICKEPTASWSGLKAAIGTAIRAQLLTGVPAILEMYI----HTDTQTGMQRRSDAELI 126 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 I+ +LD + ++A GG I R G +++SM G C GC SA TL+ G +L Sbjct: 127 TVIQGLLDKEINRSIANHGGKISIVEIRQGKLYISMSGGCQGCASAQVTLRQGFEVMLKR 186 Query: 179 FVPEVKDIRT 188 PE+++I Sbjct: 187 VAPEIEEIVD 196 >gi|126668356|ref|ZP_01739314.1| hypothetical protein MELB17_13022 [Marinobacter sp. ELB17] gi|126627172|gb|EAZ97811.1| hypothetical protein MELB17_13022 [Marinobacter sp. ELB17] Length = 211 Score = 164 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 10/189 (5%) Query: 3 IQTEDT-PNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 I+ E + +P T KFI + + G F N + A SPL ++F++PG+A++ + Sbjct: 13 IRAESSLADPDTCKFIVSRTLHPGGPFFFGNKERAVGSPLGEQLFALPGVANLLIADSVV 72 Query: 62 TVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 TV K+ W L+ + I SG P I + + ++D+ + Sbjct: 73 TVCKEPAASWSGLKAGIGMAIRTQLRSGVPAILEMPAHNRRQ--------GKTDAELTTA 124 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 ++E+LD V ++A GG I G R G + ++M G C GC S+ TL+ G +L Sbjct: 125 VQELLDKEVNRSIANHGGKISIVGVRQGKLSITMSGGCQGCASSQVTLRQGFEVMLKRVA 184 Query: 181 PEVKDIRTV 189 PE+++I V Sbjct: 185 PEIEEIIDV 193 >gi|325115956|emb|CBZ51510.1| Nitrogen-fixing NifU, C-terminal, related [Neospora caninum Liverpool] Length = 191 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 9/177 (5%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKD-QYDWEHLRPPVLG 79 L G I + + SPLA +F I G +SV D++TV K DW L PV Sbjct: 2 PYLKRGMIDVLSVRAEGASPLADCLFKIDGTSSVLIAGDYVTVVKAKDTDWGDLEEPVKR 61 Query: 80 MIMEHFISGDPII------HNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAV 133 I++H +SG P I + + + + + + + + I+E+L R RP + Sbjct: 62 SILDHLMSGLPAIQPVASSEEISVPEGRRQEPQQQSKPDEEEDLSEAIRELLHMRARPML 121 Query: 134 ARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 DGGD+ + + GIV++ ++G+C GCPS+ T+K G+ +L +++PEV+D+R Sbjct: 122 QADGGDLEMMRFDEETGIVWVHLKGSCEGCPSSLITVKRGMKQMLQYYIPEVEDVRQ 178 >gi|42521822|ref|NP_967202.1| putative nitrogen-fixing protein NifU [Bdellovibrio bacteriovorus HD100] gi|39574352|emb|CAE77856.1| putative nitrogen-fixing protein NifU [Bdellovibrio bacteriovorus HD100] Length = 186 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 11/188 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 + I+ + TPNP KF+ + VL +G +++AKEAE S LAS +F + G+ V+F + Sbjct: 6 VLIRIQATPNPNAWKFVLDRAVLNDGKATYADAKEAEQSILASSLFQVEGVRQVHFFQNV 65 Query: 61 ITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 IT+ + D E ++ V +I + +P + ++ + VQ Sbjct: 66 ITITHNFDADPEEIQRNVCSVIQTRMPAHNPAVTQMDEKKLRRASLPPE---------VQ 116 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN-H 178 +I+E+LD VRP + DGGD+ Y D +++ +GAC CPSA+ + IL Sbjct: 117 QIEEILDQTVRPGLQGDGGDLDVVKYEDNKLYVFYQGACGTCPSATSGTLMAIEGILRDQ 176 Query: 179 FVPEVKDI 186 F P ++ I Sbjct: 177 FNPTIEVI 184 >gi|114331232|ref|YP_747454.1| NifU domain-containing protein [Nitrosomonas eutropha C91] gi|114308246|gb|ABI59489.1| nitrogen-fixing NifU domain protein [Nitrosomonas eutropha C91] Length = 186 Score = 160 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 6/184 (3%) Query: 4 QTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITV 63 + E TPNP LKFI + + ++NA++A PLA+ +F I + +V++ +IT+ Sbjct: 6 EIEGTPNPNALKFILKEPLTWGVTKSYNNAEQAADDPLAAALFDIDHVINVFYVDRWITI 65 Query: 64 GKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIK 122 +D DW+ L V I P + + + E D ++RI Sbjct: 66 TQDGGADWQDLAREVADPIRA-----APAATDQSATVVAAASEALANLSEEDQQRLERIN 120 Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 +L+ VRP + DGGD+ ++ + +GAC CPS+ G+ +L P+ Sbjct: 121 ILLEEEVRPYLQHDGGDLHVLALEGSLLRIHYQGACGTCPSSISGTLRGIEQLLRTIEPD 180 Query: 183 VKDI 186 ++ + Sbjct: 181 IRVV 184 >gi|218659803|ref|ZP_03515733.1| Scaffold protein Nfu/NifU [Rhizobium etli IE4771] Length = 107 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 57/97 (58%), Positives = 76/97 (78%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPAT KF+PG+VV+ G F +A+EA+ SPLA+R+F IPG+ VYFGYDF Sbjct: 9 MFIQTEATPNPATQKFLPGKVVMENGTAEFRSAEEAQASPLAARLFEIPGVTGVYFGYDF 68 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGL 97 I+V KD +W+HL+P +LG IMEHF+SG P++ + + Sbjct: 69 ISVSKDDVEWQHLKPAILGSIMEHFMSGKPVMGDASI 105 >gi|218516514|ref|ZP_03513354.1| nitrogen fixation protein [Rhizobium etli 8C-3] Length = 99 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 57/92 (61%), Positives = 73/92 (79%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPNPAT KF+PG+VV+ G F +A EAE SPLA+R+F IPG+ VYFGYDF Sbjct: 1 MFIQTEATPNPATQKFLPGKVVMENGTAEFRSAAEAEASPLAARLFEIPGVTGVYFGYDF 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPII 92 I+V KD +W+HL+P +LG IM+HF+SG P++ Sbjct: 61 ISVSKDNAEWQHLKPAILGSIMKHFMSGKPVM 92 >gi|89900651|ref|YP_523122.1| nitrogen-fixing NifU-like protein [Rhodoferax ferrireducens T118] gi|89345388|gb|ABD69591.1| nitrogen-fixing NifU-like [Rhodoferax ferrireducens T118] Length = 186 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 6/184 (3%) Query: 4 QTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITV 63 + EDTPNP KF+ + + A + NA++A+ LAS +F+I + +V++ ++TV Sbjct: 6 EIEDTPNPNARKFVLREPLTWGIAHSYENAEQAQGDALASALFAIDHVTNVFYIDRWLTV 65 Query: 64 GKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIK 122 +D Q +W+ L + + + + + D+ + D D I+ Sbjct: 66 TQDGQANWDALVREIAVPLRAAPAASEQSAAAVFEARAHVADLSAQDRQRLDD-----IE 120 Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 +LD +RP + DGGD+ G + + +GAC CPSA G+ + L P+ Sbjct: 121 LILDQEIRPYLQSDGGDLHILGLAGNQLIVHYQGACGTCPSAISGTLQGIESRLRTLEPD 180 Query: 183 VKDI 186 ++ I Sbjct: 181 IEVI 184 >gi|57335931|emb|CAH25367.1| nifU-like protein [Guillardia theta] Length = 183 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 54/127 (42%), Positives = 74/127 (58%), Gaps = 8/127 (6%) Query: 65 KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEV 124 KDQ+ W ++P V I++ + SG II + D E DS +V IKE+ Sbjct: 32 KDQHSWAEMKPEVFDAILDFYASGQSIIT------AEEDMPQDTKVNEDDSEIVAMIKEL 85 Query: 125 LDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 LD R+RPAV DGGDI F G+ + G V + ++GACS C S+ TLK GV N+L H+VPE Sbjct: 86 LDTRIRPAVQDDGGDISFIGFDEETGRVTVRLQGACSTCSSSKVTLKSGVENMLMHYVPE 145 Query: 183 VKDIRTV 189 V ++ V Sbjct: 146 VTEVVAV 152 >gi|310877201|gb|ADP36961.1| hypothetical protein [Asterochloris sp. DA2] Length = 141 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 58/118 (49%), Positives = 76/118 (64%), Gaps = 7/118 (5%) Query: 70 WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRV 129 W L+P V IM+HF SGDP++ + E DS VV IKE+L+ R+ Sbjct: 3 WSVLKPDVFXAIMDHFTSGDPLLLDDDEYGA-----SDTAIQEDDSDVVAMIKELLETRI 57 Query: 130 RPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKD 185 RPAV DGGDIVF+G+ + GIV L M+GACSGCPS++ TLK G+ N+L H++PEVK Sbjct: 58 RPAVMEDGGDIVFQGFDENSGIVKLKMQGACSGCPSSAVTLKSGIENMLKHYIPEVKS 115 >gi|323336723|gb|EGA77987.1| Nfu1p [Saccharomyces cerevisiae Vin13] Length = 174 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 82/145 (56%), Gaps = 10/145 (6%) Query: 55 YFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLD-------DMG 106 G DF+T+ KD W ++P ++ ++ + G+ +I + + +M Sbjct: 1 MIGDDFLTINKDRMVHWNSIKPEIIDLLTKQLAXGEDVISKEFHAVQEEEGEGGYKINMP 60 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSA 164 + E D V + I+E++D R+RPA+ DGGDI ++G+ G V+L ++GAC+ C S+ Sbjct: 61 KFELTEEDEEVSELIEELIDTRIRPAILEDGGDIDYRGWDPKTGTVYLRLQGACTSCSSS 120 Query: 165 SETLKYGVANILNHFVPEVKDIRTV 189 TLKYG+ ++L H+V EVK++ + Sbjct: 121 EVTLKYGIESMLKHYVDEVKEVIQI 145 >gi|149195565|ref|ZP_01872622.1| putative nitrogen-fixing protein NifU [Lentisphaera araneosa HTCC2155] gi|149141027|gb|EDM29423.1| putative nitrogen-fixing protein NifU [Lentisphaera araneosa HTCC2155] Length = 185 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 16/188 (8%) Query: 1 MFI-QTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +F+ E TPNP LK++ + +L +G FS A+EA LA F++ G+ S+++ + Sbjct: 2 IFVTHMETTPNPNALKYVLNETILEDGICQFSAAEEA-TDDLARACFAVEGVVSIFYRDN 60 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +IT+ K D DW + + I + + K + +F E + V Sbjct: 61 YITITKNDSADWFEIEMTIKDEIN----------NRVEAIEFKAQAVPEINFGEKQTLVF 110 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + I ++LD +RP +A DGG + + ++ + +GAC CPS++ + NIL Sbjct: 111 E-IDDILDETIRPGLAMDGGGVDIIDLSDEMVLSVRYQGACGSCPSSTTGTLMAIENILQ 169 Query: 178 H-FVPEVK 184 F P + Sbjct: 170 EQFDPRIT 177 >gi|256089666|ref|XP_002580899.1| iron-sulfur cluster scaffold protein nfu-related [Schistosoma mansoni] gi|238666574|emb|CAZ37138.1| iron-sulfur cluster scaffold protein nfu-related [Schistosoma mansoni] Length = 153 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 40/100 (40%), Positives = 62/100 (62%), Gaps = 1/100 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 +FIQ ++TPNP +LK+ PG+ VL G F + ++ SPLA ++F I G+ V+FG DF Sbjct: 44 LFIQVQETPNPNSLKYFPGKPVLGSGTRDFPSCTQSTSSPLARQLFRIEGVERVFFGPDF 103 Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGD 99 IT+ K D ++W ++P V IM+ + SG P++ D Sbjct: 104 ITITKNDDFEWAVIKPDVYATIMDFYSSGQPVVSEEKAQD 143 >gi|323304101|gb|EGA57879.1| Nfu1p [Saccharomyces cerevisiae FostersB] Length = 174 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 81/145 (55%), Gaps = 10/145 (6%) Query: 55 YFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLD-------DMG 106 G DF+T+ KD W ++P ++ ++ + + +I + + +M Sbjct: 1 MIGDDFLTINKDRMVHWNSIKPEIIDLLTKQLAYXEDVISKEFHAVQEEEGEGGYKINMP 60 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSA 164 + E D V + I+E++D R+RPA+ DGGDI ++G+ G V+L ++GAC+ C S+ Sbjct: 61 KFELTEEDEEVSELIEELIDTRIRPAILEDGGDIDYRGWDPKTGTVYLRLQGACTSCSSS 120 Query: 165 SETLKYGVANILNHFVPEVKDIRTV 189 TLKYG+ ++L H+V EVK++ + Sbjct: 121 EVTLKYGIESMLKHYVDEVKEVIQI 145 >gi|329904748|ref|ZP_08273923.1| nitrogen-fixing NifU-like protein [Oxalobacteraceae bacterium IMCC9480] gi|327547851|gb|EGF32611.1| nitrogen-fixing NifU-like protein [Oxalobacteraceae bacterium IMCC9480] Length = 186 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 84/187 (44%), Gaps = 7/187 (3%) Query: 4 QTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITV 63 + +DTPNP +KF + + A + N +A PLA+ +F++ + +V++ ++TV Sbjct: 6 EIDDTPNPNAVKFTLHEPLSWGVAHAYDNPAQAAGDPLATALFALDHVTNVFYTDRWLTV 65 Query: 64 GKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIK 122 +D + DW L + + + + E + RI Sbjct: 66 TQDGEADWPALVRLIAVPLRAAPA-----AAAQSAELVSAARLAVHTMSEDEQDRFARIT 120 Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 ++LD ++RPA+ DGGD+ G + + +GAC CPS+ + N+L P+ Sbjct: 121 DLLDLQIRPALQADGGDLHVLGLSGDTLSIHYQGACGTCPSSIGGTLASIENLLRSIEPD 180 Query: 183 VKDIRTV 189 + ++ V Sbjct: 181 I-AVQAV 186 >gi|209883397|ref|YP_002287254.1| nifu protein [Oligotropha carboxidovorans OM5] gi|209871593|gb|ACI91389.1| nifu protein [Oligotropha carboxidovorans OM5] Length = 210 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 54/133 (40%), Positives = 81/133 (60%), Gaps = 5/133 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE+TP+P +KF+PG+ VL EG ++ + + A SPLA ++F+IPG+A V D Sbjct: 1 MFIQTEETPDPERMKFLPGREVLPEGTLNLKSREHAGSSPLAEQLFAIPGVAGVLLNKDS 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 I V + DW+HL+P +LG+IMEHF+SG P++ + D E+D+ R Sbjct: 61 IVVTRSDSDWQHLKPAILGVIMEHFMSGAPVLRAPPAA---PERTAESDGGETDA--TGR 115 Query: 121 IKEVLDNRVRPAV 133 I+E L + P + Sbjct: 116 IREALRKVIDPEL 128 >gi|221504979|gb|EEE30644.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 235 Score = 144 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 12/177 (6%) Query: 24 VEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKD-QYDWEHLRPPVLGMIM 82 +G F +A L F I G +SV ++TV K DW+ L PV I Sbjct: 3 EKGTGTFR-CTQAHTLSLLFCTFQIDGTSSVLIAGGYVTVVKARDTDWKDLEEPVKRCIQ 61 Query: 83 EHFISGDPIIHNGGLGDMKLDDMG--------SGDFIESDSAVVQRIKEVLDNRVRPAVA 134 +H SG P + + E + + + I+E+L R RP + Sbjct: 62 DHLTSGIPAVQRAVSSEDVSGAAEGRPQVPEKKNAKSEEEEDLSEAIRELLHMRARPMLQ 121 Query: 135 RDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 DGGD+ + + GIV++ ++G+C GCPS+ T+K G+ +L +++PEV+ I V Sbjct: 122 ADGGDLEMMRFDEETGIVWVHLKGSCEGCPSSLITVKRGMKQMLQYYIPEVRTILRV 178 >gi|237843489|ref|XP_002371042.1| NifU-like domain-containing protein [Toxoplasma gondii ME49] gi|211968706|gb|EEB03902.1| NifU-like domain-containing protein [Toxoplasma gondii ME49] gi|221484803|gb|EEE23097.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 235 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 12/177 (6%) Query: 24 VEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKD-QYDWEHLRPPVLGMIM 82 +G F +A L F I G +SV ++TV K DW+ L PV I Sbjct: 3 EKGTGTFR-CTQAHTLSLLFCTFQIDGTSSVLIAGGYVTVVKARDTDWKDLEEPVKRCIQ 61 Query: 83 EHFISGDPIIHNGGLGDMKLDDMG--------SGDFIESDSAVVQRIKEVLDNRVRPAVA 134 +H SG P + + E + + + I+E+L R RP + Sbjct: 62 DHLTSGIPAVQRAVSSEDVSGAAEGRPEVPEKKNAKSEEEEDLSEAIRELLHMRARPMLQ 121 Query: 135 RDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 DGGD+ + + GIV++ ++G+C GCPS+ T+K G+ +L +++PEV+ I V Sbjct: 122 ADGGDLEMMRFDEETGIVWVHLKGSCEGCPSSLITVKRGMKQMLQYYIPEVRTILRV 178 >gi|149196448|ref|ZP_01873503.1| putative nitrogen-fixing protein NifU [Lentisphaera araneosa HTCC2155] gi|149140709|gb|EDM29107.1| putative nitrogen-fixing protein NifU [Lentisphaera araneosa HTCC2155] Length = 189 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 13/184 (7%) Query: 5 TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVG 64 T+ TPNP +KFI V+ +G + +SNA++ + LA+ +FSI I V+F + ITV Sbjct: 7 TQPTPNPNAVKFILNLDVITKGRVSYSNAEDCHNNELAATLFSIACITQVHFFENVITVT 66 Query: 65 KD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKE 123 ++ WE L V+ ++ + DP G + S V++I++ Sbjct: 67 QNGDMYWEELEDAVIALLQDGIDKHDPEFQVGE---------DEEERRAKLSPEVRQIED 117 Query: 124 VLDNRVRPAVARDGGDIVFKGYRDG--IVFLSMRGACSGCPSASETLKYGVANILN-HFV 180 +LD VRP++ DGGD++ GY G I+ + GAC+ C S++ + + L F Sbjct: 118 ILDRTVRPSLQGDGGDLMVMGYDLGSKILKVMYEGACNSCASSTTGTLMAIKSTLQAEFD 177 Query: 181 PEVK 184 P+++ Sbjct: 178 PDIE 181 >gi|145544593|ref|XP_001457981.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124425800|emb|CAK90584.1| unnamed protein product [Paramecium tetraurelia] Length = 196 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 16/192 (8%) Query: 1 MFIQTEDTPNPATLKFIP-GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 + IQ + PNP LKFIP G+ + + F+ + G+ ++G D Sbjct: 10 LLIQVKQVPNPNFLKFIPIGKQ--SKRCLMFTTCLKPIQH---------NGVTREFYGMD 58 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 +I++ K ++ W+ LR + I + + S L + + S + DS + Sbjct: 59 YISISKKNESKWDDLRSRIFEQIFDQYESNQEGSEKQFLFEGFKQNKDSV-IQDDDSKPI 117 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANIL 176 Q IK++L++R+RP GGDIVF+ + +GI++L +G+C CP+ + TLK +L Sbjct: 118 QLIKDILNHRIRPDFQEIGGDIVFREFDELNGILYLYKKGSCVECPATATTLKNRFEKML 177 Query: 177 NHFVPEVKDIRT 188 V +VK + Sbjct: 178 CQNVDQVKQVIA 189 >gi|294877892|ref|XP_002768179.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] gi|239870376|gb|EER00897.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] Length = 177 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 8/160 (5%) Query: 33 AKEAEISPLASRIFSIPGIASVYFGYDFITVGKD-QYDWEHLRPPVLGMIMEHFISGDPI 91 + SPLA+ +F I G+ V TV K + DWE L+P V ++ + F I Sbjct: 5 RSQCGGSPLAASLFRIHGVDKVLLAARHATVTKSPETDWEMLQPNVELVMSQFFE----I 60 Query: 92 IHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGI 149 + + ++ G +D VV+ I E+L+ R++P V RDGGD+ F + G Sbjct: 61 PNVKPVSPEAIEYTPEGQDQHND-EVVKSIHEILEQRIKPFVERDGGDVEFVSFDADSGE 119 Query: 150 VFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 + + + G+CSGCP +S TLK+G+ ++ H++PEVK++ + Sbjct: 120 LEIRLVGSCSGCPKSSVTLKFGIQRMVCHYIPEVKNVTNI 159 >gi|17946069|gb|AAL49077.1| RE53788p [Drosophila melanogaster] Length = 134 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 47/108 (43%), Positives = 65/108 (60%), Gaps = 7/108 (6%) Query: 82 MEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIV 141 M+ F SG P++++ + +E D V IKE+LD R+RP V DGGDIV Sbjct: 1 MDFFASGLPVLNDAQPN-------ADTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIV 53 Query: 142 FKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 F GY G+V L M+G+CS CPS+ TLK GV N+L ++PEV+ + V Sbjct: 54 FMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQV 101 >gi|299132121|ref|ZP_07025316.1| Scaffold protein Nfu/NifU [Afipia sp. 1NLS2] gi|298592258|gb|EFI52458.1| Scaffold protein Nfu/NifU [Afipia sp. 1NLS2] Length = 213 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 81/151 (53%), Gaps = 7/151 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE+T + L+F+PG+ VL EG ++ ++A SPLA ++F+IPG+A V D Sbjct: 1 MFIQTEETQDSERLRFLPGREVLPEGTLNLKTKEQAASSPLAEQLFTIPGVAGVLLNKDS 60 Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 I V + DW+HL+P +LG IMEHF+SG P++ G E D+ + Sbjct: 61 IVVTRSGSDWQHLKPAILGAIMEHFMSGAPVVRTPPGASAHASASGE----EGDATATGQ 116 Query: 121 IKEVLDNRVRPAV---ARDGGDIVFKGYRDG 148 I+E L + P + D G + DG Sbjct: 117 IREALRRVIDPELGYNIVDLGLVYDVTVEDG 147 >gi|327188587|gb|EGE55797.1| nitrogen fixation protein [Rhizobium etli CNPAF512] Length = 107 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 56/107 (52%), Positives = 81/107 (75%), Gaps = 1/107 (0%) Query: 82 MEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIV 141 MEHF+SG P++ + + + D G F E D ++V IKE+L+ RVRPAVA+DGGDI Sbjct: 1 MEHFMSGKPVMGDASILS-EDADAGDEFFDEGDESIVLTIKELLETRVRPAVAQDGGDIT 59 Query: 142 FKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 F+G++DG V+L+M+G+CSGCPS++ TLK+GV N+L HFVPEV+++ Sbjct: 60 FRGFKDGKVYLNMKGSCSGCPSSTATLKHGVQNLLRHFVPEVQEVIA 106 >gi|254439456|ref|ZP_05052950.1| NifU-like domain protein [Octadecabacter antarcticus 307] gi|198254902|gb|EDY79216.1| NifU-like domain protein [Octadecabacter antarcticus 307] Length = 414 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 14/180 (7%) Query: 10 NPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKD-QY 68 +P TL+FI V ++ + +A +PLA +F+I G+ V I V + Sbjct: 18 DPQTLRFILDAPVQDSTSVCYDDASA--DAPLARALFAISGVQRVEVDGASIYVSRSADV 75 Query: 69 DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNR 128 DW L+ P+ I + ++ L + + G+ D+ + + ++LD+ Sbjct: 76 DWSALKAPIAAAIRD-------VLEREALPLGQRSEAPKGE----DALLFLAVADLLDSE 124 Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 PA+A GG + + + V+L M G C GC ++S TL+ G+ +L +P + +I Sbjct: 125 ANPAIASHGGSVAVERVENSDVYLRMSGGCQGCAASSATLRQGIETMLRAGLPAIGEIID 184 >gi|50593019|ref|NP_001002757.1| NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 3 [Homo sapiens] gi|50593023|ref|NP_001002756.1| NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 3 [Homo sapiens] gi|114577881|ref|XP_001137265.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 3 [Pan troglodytes] gi|114577883|ref|XP_001137343.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 4 [Pan troglodytes] gi|114577885|ref|XP_001137421.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial isoform 5 [Pan troglodytes] gi|332226736|ref|XP_003262548.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like isoform 4 [Nomascus leucogenys] gi|332226738|ref|XP_003262549.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like isoform 5 [Nomascus leucogenys] gi|332226740|ref|XP_003262550.1| PREDICTED: NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like isoform 6 [Nomascus leucogenys] Length = 113 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 8/108 (7%) Query: 82 MEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIV 141 M+ F SG P++ E D VV IKE+LD R+RP V DGGD++ Sbjct: 1 MDFFASGLPLVTEETPSGEAG--------SEEDDEVVAMIKELLDTRIRPTVQEDGGDVI 52 Query: 142 FKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 +KG+ DGIV L ++G+C+ CPS+ TLK G+ N+L ++PEV+ + V Sbjct: 53 YKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFYIPEVEGVEQV 100 >gi|238568059|ref|XP_002386363.1| hypothetical protein MPER_15421 [Moniliophthora perniciosa FA553] gi|215438109|gb|EEB87293.1| hypothetical protein MPER_15421 [Moniliophthora perniciosa FA553] Length = 105 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 42/100 (42%), Positives = 61/100 (61%), Gaps = 1/100 (1%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 MFIQTE TPN +LKFIPG V+ EG F + + A SPLA R+ I G+ +V++G DF Sbjct: 1 MFIQTETTPNDDSLKFIPGIPVMGEGTAEFLDTRSALASPLAIRLMGIEGVKAVFYGPDF 60 Query: 61 ITVGKDQYD-WEHLRPPVLGMIMEHFISGDPIIHNGGLGD 99 +T+ KD + W ++P V ++ME F SG + + + Sbjct: 61 VTISKDSENPWAVIKPEVYSILMEFFSSGQKMFRSDEERE 100 >gi|120434576|ref|YP_860269.1| hypothetical protein GFO_0207 [Gramella forsetii KT0803] gi|117576726|emb|CAL65195.1| conserved hypothetical protein [Gramella forsetii KT0803] Length = 257 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 74/145 (51%), Gaps = 5/145 (3%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 + E TPNPA +KF+ + ++++ A+ F N +A+ +PL ++F P + ++ ++++ Sbjct: 110 VYAESTPNPAVMKFVANKKLVLK-AVEFKNIDDAKNAPLVQKLFHFPFVKEIFIDENYVS 168 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGG---LGDMKLDDMGSGDFIESDSAVV 118 + K D WE + + I + G+ +++ D + E+ Sbjct: 169 IQKYDMAGWEEITMELREFIRNYIEEGNEVLNVESVQVAADSSSEKGTKTPEFENLDDTS 228 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFK 143 Q+I +LD ++PAVA DGG+I+F Sbjct: 229 QQIIAILDEYIKPAVASDGGNILFD 253 Score = 71.7 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 1/116 (0%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I T P+ KF + + + F N EA SP+A ++F +P + +VY +FI Sbjct: 6 INIVRTTTPSIAKFEADKFLTRHESFEFKNIDEASRSPIAQQLFYLPFVKTVYIAQNFIA 65 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 + K D +WE + V I + G +I K+ + + + + Sbjct: 66 IEKYDIVEWEDVEKEVAEQIETYLNKGGEVIKEVKASTGKVPVTVYAESTPNPAVM 121 >gi|237653650|ref|YP_002889964.1| nitrogen-fixing NifU domain protein [Thauera sp. MZ1T] gi|237624897|gb|ACR01587.1| nitrogen-fixing NifU domain protein [Thauera sp. MZ1T] Length = 202 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 10/193 (5%) Query: 7 DTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKD 66 TPNP KF+ + HFS L + ++PG+ +Y FIT+ +D Sbjct: 9 STPNPLANKFMLDAPLYTGAPRHFSAGVAVVGDTLGESLLAVPGVVDIYCTGGFITITRD 68 Query: 67 -QYDWEHLRPPVLGMIMEHFIS---------GDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 W + P V +I H G +G + + D+ Sbjct: 69 PGTPWSAIEPAVTELIEGHKARRVIGIANPAGPGGAAGAAIGAGEAVAEEPVEVEADDAE 128 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++ RI ++LD +RP + +DGG + ++ + + +GAC GCPS+S + + N+L Sbjct: 129 LLMRINQILDEHIRPFLDQDGGGLDVVKLKEFTLTVRYKGACGGCPSSSTGTLFAINNLL 188 Query: 177 NHFVPEVKDIRTV 189 ++V + + + Sbjct: 189 QNYVDDRLLVEPI 201 >gi|167042854|gb|ABZ07571.1| putative NifU-like domain protein [uncultured marine microorganism HF4000_ANIW137J11] Length = 225 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 16/188 (8%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I+ E T + +F+ + L +G F++ AE +PLA +F++P +++V D ++ Sbjct: 6 IRGEPTADQQVCRFVVDRS-LHDGNASFTSTAAAEGAPLAEALFALPDVSAVTIARDTVS 64 Query: 63 VGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 V K +W + + I SG+P + + + +R+ Sbjct: 65 VTKQGDAEWPEIGKLIGDAIRAQIASGEPAVGEMTPASGE--------------ELFERV 110 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP 181 + VL N + P++A GG + + +G ++ M G C GC A TLK+G+ + L VP Sbjct: 111 QAVLVNEINPSIANHGGVVTLQRIEEGKAYVQMGGGCQGCGMADVTLKHGIESYLRQKVP 170 Query: 182 EVKDIRTV 189 E+ ++ V Sbjct: 171 EISEVVDV 178 >gi|294877894|ref|XP_002768180.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] gi|239870377|gb|EER00898.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] Length = 251 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 12/185 (6%) Query: 12 ATLKFIPG--QVVLVEGA--IHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK-D 66 + F + +L GA + F + + + SPLA +F I G+ V + + V K Sbjct: 58 NVMIFWLNNDKKILPSGAKGMTFDSKEGSSQSPLALSLFKIEGVERVVLTHHNVAVSKVS 117 Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLD 126 DW ++P V ++ F P + + ++ + + +++RI EVLD Sbjct: 118 SIDWCFVKPKVESVLSNFFA--VPGLQSVYRSALQFETEVEE---AEKAKLMERIAEVLD 172 Query: 127 NRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVK 184 +R+RP + DGGD+ + + G++ + ++GAC+GCP +S TL++ + N+L VPEVK Sbjct: 173 DRIRPVLQDDGGDVDVADFDEETGVLSVRLKGACAGCPMSSVTLRFRIENMLVQSVPEVK 232 Query: 185 DIRTV 189 + + Sbjct: 233 KVINI 237 >gi|254455102|ref|ZP_05068538.1| NifU-like domain protein [Octadecabacter antarcticus 238] gi|198263804|gb|EDY88075.1| NifU-like domain protein [Octadecabacter antarcticus 238] Length = 419 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 15/188 (7%) Query: 3 IQTEDT-PNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 I+ + T +P TL+FI V ++ + +A +PLA +F+I G+ V I Sbjct: 10 IRVQPTVKDPQTLRFILEAPVQDSTSVCYDDASA--DAPLARALFAISGVQRVEVDGASI 67 Query: 62 TVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 V + DW L+ P+ I + S + + K +D + Sbjct: 68 YVSRSTDVDWSALKAPIAVAIRDVLDS-EALPLGQRSEAPKGEDALLLLAVAELL----- 121 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 D PA+A GG + + + V+L M G C GC ++S TL+ G+ +L + Sbjct: 122 -----DCEANPAIASHGGSVAVERVENSDVYLRMSGGCQGCAASSATLRQGIETMLRAGL 176 Query: 181 PEVKDIRT 188 P + +I Sbjct: 177 PAIGEIID 184 >gi|213407222|ref|XP_002174382.1| NifU-like protein c [Schizosaccharomyces japonicus yFS275] gi|212002429|gb|EEB08089.1| NifU-like protein c [Schizosaccharomyces japonicus yFS275] Length = 183 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 35/103 (33%), Positives = 60/103 (58%), Gaps = 2/103 (1%) Query: 88 GDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD 147 G P + + ++SDS V IKE++D+ +RP++ DGGD+ ++G+ + Sbjct: 43 GAPFHGEPVIDGTPFNPSADTQILDSDSETVAMIKELIDSSIRPSIQEDGGDLEYRGFDE 102 Query: 148 --GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 G V+L +RG+C C S+ TLK G+ +L H++PEVK++ Sbjct: 103 QTGTVYLKLRGSCRTCASSEITLKSGIQQMLMHYIPEVKNVEQ 145 >gi|118340603|gb|ABK80653.1| uncharacterized protein [uncultured marine Nitrospinaceae bacterium] Length = 253 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 14/189 (7%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 + I+ + +P F + ++ + +F++ + AE S LA R+FS + +V Sbjct: 61 VLIKAQPSPTGDQCLFTVNRSLMTGHSWYFADFESAEGSSLAERLFSQEDVETVLVCECT 120 Query: 61 ITVG-KDQY--DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 +T+ KD+ DW L V I E G+ +I + D+ ++ V Sbjct: 121 VTITRKDKTLFDWGPLAKDVGTAIREAIQDGEGLIAEKIIADLPTEE-----------EV 169 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + I++V+D V P VA GG+I R V + M G C GC +A TLK G+ Sbjct: 170 REGIQKVIDVEVNPGVAGHGGNISLLDVRGNSVTIQMGGGCQGCSAADLTLKQGIHTSFR 229 Query: 178 HFVPEVKDI 186 VP+V I Sbjct: 230 TAVPKVGAI 238 >gi|313230548|emb|CBY18764.1| unnamed protein product [Oikopleura dioica] Length = 140 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 3/105 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FI TE TPNP LKF+PG+ VL G F + +EA SPLA RIF++ G+ +FG D Sbjct: 15 LFITTEVTPNPNALKFVPGRDVLGAGATCDFPDIREAYKSPLAKRIFAVDGVKGCFFGPD 74 Query: 60 FITVGKDQY--DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKL 102 F+T+ + DW ++ + ++ + F S PII+ L + Sbjct: 75 FVTIIRHDETDDWPVMKAELFAVLTDFFDSNLPIINEDALPNQDT 119 >gi|313220326|emb|CBY31182.1| unnamed protein product [Oikopleura dioica] Length = 140 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 3/105 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 +FI TE TPNP LKF+PG+ VL G F + +EA SPLA RIF++ G+ +FG D Sbjct: 15 LFITTEVTPNPNALKFVPGRDVLGAGATCDFPDIREAYKSPLAKRIFAVDGVKGCFFGPD 74 Query: 60 FITVGKDQY--DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKL 102 F+T+ + DW ++ + ++ + F S PII+ L + Sbjct: 75 FVTIIRHDETDDWPVMKAELFAVLTDFFDSNLPIINEDALPNQDT 119 >gi|157874760|ref|XP_001685794.1| hypothetical protein [Leishmania major strain Friedlin] gi|68128867|emb|CAJ06031.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 426 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 7/125 (5%) Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLD 126 + DW L+ V ++ +H SG+P + E DS VV IKE++ Sbjct: 216 ETDWSELKLHVSALLTDHICSGNPHVDPSAP-----HPHADTAPEEGDSEVVLMIKELVS 270 Query: 127 NRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVK 184 +RP + DGGD+ F G+ G + + + GAC C S+ TL + H++PEV Sbjct: 271 TTIRPQLQDDGGDLRFVGFDPVLGDMHVELLGACRTCKSSKTTLVDLIERTTRHWIPEVS 330 Query: 185 DIRTV 189 +R V Sbjct: 331 AVRDV 335 Score = 45.2 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 3/70 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQV--VLVEGAIHFSNAKEAEISPLASRIF-SIPGIASVYFG 57 +F++ + TPN A KF ++ + N+ + +SPLA + ++P + V G Sbjct: 47 VFVRFQPTPNDACYKFYVDEMQFLPPNAHTMVFNSTNSYLSPLAHTLLEALPMVEEVTVG 106 Query: 58 YDFITVGKDQ 67 F+TV + + Sbjct: 107 TSFVTVKRVE 116 >gi|322502114|emb|CBZ37197.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 448 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 7/125 (5%) Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLD 126 + DW L+ V ++ +H SG+P + E DS VV IKE++ Sbjct: 238 ETDWSELKLHVSALLTDHICSGNPHVDPSAP-----HPHADTVPEEGDSEVVLMIKELVS 292 Query: 127 NRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVK 184 +RP + DGGD+ F G+ G + + + GAC C S+ TL + H++PEV Sbjct: 293 TTIRPQLQDDGGDLRFVGFDPVLGDMHVELLGACRTCKSSKTTLVDLIERTTRHWIPEVS 352 Query: 185 DIRTV 189 ++ V Sbjct: 353 AVKDV 357 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQV--VLVEGAIHFSNAKEAEISPLASRIF-SIPGIASVYFG 57 +F++ + TPN A KF ++ + N+ + ISPLA + ++P + V G Sbjct: 69 VFVRFQPTPNDACYKFYVDEMQFLPPNAHTMVFNSTNSYISPLAHTLLEALPMVEEVTVG 128 Query: 58 YDFITVGKDQ 67 F+TV + + Sbjct: 129 TSFVTVKRVE 138 >gi|146097555|ref|XP_001468136.1| hypothetical protein [Leishmania infantum] gi|134072503|emb|CAM71216.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 448 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 7/125 (5%) Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLD 126 + DW L+ V ++ +H SG+P + E DS VV IKE++ Sbjct: 238 ETDWSELKLHVSALLTDHICSGNPHVDPSAP-----HPHADTVPEEGDSEVVLMIKELVS 292 Query: 127 NRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVK 184 +RP + DGGD+ F G+ G + + + GAC C S+ TL + H++PEV Sbjct: 293 TTIRPQLQDDGGDLRFVGFDPVLGDMHVELLGACRTCKSSKTTLVDLIERTTRHWIPEVS 352 Query: 185 DIRTV 189 ++ V Sbjct: 353 AVKDV 357 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQV--VLVEGAIHFSNAKEAEISPLASRIF-SIPGIASVYFG 57 +F++ + TPN A KF ++ + N+ + ISPLA + ++P + V G Sbjct: 69 VFVRFQPTPNDACYKFYVDEMQFLPPNAHTMVFNSTNSYISPLAHTLLEALPMVEEVTVG 128 Query: 58 YDFITVGKDQ 67 F+TV + + Sbjct: 129 TSFVTVKRVE 138 >gi|312213452|emb|CBX93534.1| hypothetical protein [Leptosphaeria maculans] Length = 186 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 41/100 (41%), Positives = 53/100 (53%), Gaps = 9/100 (9%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGA----IHFSNAKEA----EISPLASRIFSIPGIA 52 MFIQTE TPN LKF P VL E + + + SPLA+ + +I G+ Sbjct: 71 MFIQTEPTPNDDALKFNPNARVLSESISSPYLEYLTPRSTLAPPHPSPLAAALMNIDGVT 130 Query: 53 SVYFGYDFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPI 91 SV+FG D+ITV KD W H++P V +I E SG I Sbjct: 131 SVFFGTDYITVTKDSGTPWAHIKPEVFALITEFMTSGQAI 170 >gi|322820651|gb|EFZ27204.1| HIRA-interacting protein 5, putative [Trypanosoma cruzi] Length = 452 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLD 126 W L+ V ++ +H SG P + E DS VV +KE++ Sbjct: 297 STHWSELKLHVSALLTDHLFSGRPHVDPDAP-----HPHPDTLPQEGDSEVVLILKELIS 351 Query: 127 NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +RP + DGGDI F G++++ M GAC C S+ TL + H+VPEV ++ Sbjct: 352 TTIRPQLQLDGGDIRFVSLEGGVMYVEMLGACRRCKSSKTTLSDLIERTTRHWVPEVHEV 411 Query: 187 RT 188 R Sbjct: 412 RE 413 Score = 51.3 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%) Query: 2 FIQTEDTPNPATLKFIPGQVVLVE----GAIHFSNAKEAEISPLASR-IFSIPGIASVYF 56 I+ ++TPN A KF V + G + F + SPLA + + +P + V Sbjct: 111 LIRFQETPNEACYKFFVNDVAFLPAGHAGTLRF-DLDNCFQSPLAEKILHGLPMVEEVTI 169 Query: 57 GYDFITV 63 G F+TV Sbjct: 170 GPHFVTV 176 >gi|71665794|ref|XP_819863.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70885183|gb|EAN98012.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 426 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLD 126 W L+ V ++ +H SG P + E DS VV +KE++ Sbjct: 271 STHWSELKLHVSALLTDHLFSGRPHVDPDAP-----HPHPDTLPQEGDSEVVLILKELIS 325 Query: 127 NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +RP + DGGDI F G++++ M GAC C S+ TL + H+VPEV ++ Sbjct: 326 TTIRPQLQLDGGDIRFVSLEGGVMYVEMLGACRRCKSSKTTLSDLIERTTRHWVPEVHEV 385 Query: 187 RT 188 R Sbjct: 386 RE 387 Score = 51.3 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%) Query: 2 FIQTEDTPNPATLKFIPGQVVLVE----GAIHFSNAKEAEISPLASR-IFSIPGIASVYF 56 I+ ++TPN A KF V + G + F + SPLA + + +P + V Sbjct: 88 LIRFQETPNEACYKFFVNDVAFLPAGHAGTLRF-DLDNCFQSPLAEKILHGLPMVEEVTI 146 Query: 57 GYDFITV 63 G F+TV Sbjct: 147 GPHFVTV 153 >gi|71416241|ref|XP_810158.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70874651|gb|EAN88307.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 452 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLD 126 W L+ V ++ +H SG P + E DS VV +KE++ Sbjct: 298 STHWSELKLHVSALLTDHLFSGRPHVDPDAP-----HPHPDTLPQEGDSEVVLILKELIS 352 Query: 127 NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +RP + DGGDI F G++++ M GAC C S+ TL + H+VPEV ++ Sbjct: 353 TTIRPQLQLDGGDIRFVSLEGGVMYVEMLGACRRCKSSKTTLSDLIERTTRHWVPEVHEV 412 Query: 187 RT 188 R Sbjct: 413 RE 414 Score = 51.3 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%) Query: 2 FIQTEDTPNPATLKFIPGQVVLVE----GAIHFSNAKEAEISPLASR-IFSIPGIASVYF 56 I+ ++TPN A KF V + G + F + SPLA + + +P + V Sbjct: 115 LIRFQETPNEACYKFFVNDVAFLPAGHAGTLRF-DLDNCFQSPLAEKILHGLPMVEEVTI 173 Query: 57 GYDFITV 63 G F+TV Sbjct: 174 GPHFVTV 180 >gi|322494548|emb|CBZ29850.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 426 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 7/125 (5%) Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLD 126 + DW L+ V ++ +H SG+P + E DS VV IKE++ Sbjct: 216 ETDWSELKLHVSALLTDHICSGNPHVDPSS-----SHPHADTLPEEGDSEVVLLIKELVS 270 Query: 127 NRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVK 184 +RP + DGGD+ F G+ G + + + GAC C S+ TL + H++PEV+ Sbjct: 271 TTIRPQLQDDGGDLRFVGFDPVLGDMHVELLGACRTCKSSKTTLVDLIERTTRHWIPEVR 330 Query: 185 DIRTV 189 ++ V Sbjct: 331 AVKDV 335 Score = 44.0 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQV--VLVEGAIHFSNAKEAEISPLASRIF-SIPGIASVYFG 57 +F++ + TPN A KF ++ + ++ + +SPLA + ++P + V G Sbjct: 47 VFVRFQPTPNDACYKFYVDEMHFLPPNAHTMVFDSTNSYLSPLAHTLLEALPMVEEVTVG 106 Query: 58 YDFITV 63 F+TV Sbjct: 107 TSFVTV 112 >gi|297830796|ref|XP_002883280.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297329120|gb|EFH59539.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 96 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 43/78 (55%), Positives = 54/78 (69%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKY 170 DS V IKE+L+ R+RPAV DGGDI + G+ GIV L M+GACSGCPS+S TLK Sbjct: 1 DDSETVAMIKELLETRIRPAVQDDGGDIEYCGFDPESGIVKLRMQGACSGCPSSSVTLKS 60 Query: 171 GVANILNHFVPEVKDIRT 188 G+ N+L H+V EVK + Sbjct: 61 GIENMLMHYVSEVKGVEQ 78 >gi|159163237|pdb|1VEH|A Chain A, Solution Structure Of Rsgi Ruh-018, A Nifu-Like Domain Of Hirip5 Protein From Mouse Cdna Length = 92 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 36/73 (49%), Positives = 54/73 (73%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 VV IKE+LD R+RP V DGGD++++G+ DGIV L ++G+C+ CPS+ TLK G+ N+L Sbjct: 14 VVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNML 73 Query: 177 NHFVPEVKDIRTV 189 ++PEV+ + V Sbjct: 74 QFYIPEVEGVEQV 86 >gi|304397831|ref|ZP_07379707.1| IscR-regulated protein YhgI [Pantoea sp. aB] gi|304354542|gb|EFM18913.1| IscR-regulated protein YhgI [Pantoea sp. aB] Length = 191 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 15/181 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HFS + R+F I PG + G + + L+ L Sbjct: 3 RITDSAQEHFSKLLSKQEDGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELKFEKLS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ P + + + D D++GS + D+ +V+R++ +L ++ Sbjct: 63 AYVDELS--KPYLEDAEI-DFVTDNLGSQLTLKAPNAKMRKVSDDAPMVERVEYLLQAQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + DG L G C+GC TLK G+ L PE+K +R Sbjct: 120 NPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMIDVTLKDGIEKELLAAFPELKGVRD 179 Query: 189 V 189 + Sbjct: 180 I 180 >gi|242237773|ref|YP_002985954.1| DNA uptake protein [Dickeya dadantii Ech703] gi|242129830|gb|ACS84132.1| IscR-regulated protein YhgI [Dickeya dadantii Ech703] Length = 191 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 70/180 (38%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + + L+ L Sbjct: 3 RITDSAQEHFAKLLAKQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEANDTELKFEKLS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + D D +GS + D+ +++R++ VL +++ Sbjct: 63 AYVDELSA--PYLEEAEI-DFVTDQLGSQLTLKAPNAKMRKVSDDAPLMERVEYVLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + +G L G C+GC TLK G+ L PE+K +R Sbjct: 120 NPQLAGHGGRVTLMEITEEGYAILQFGGGCNGCSMVDYTLKEGIEKELLQKFPELKGVRD 179 >gi|317049909|ref|YP_004117557.1| IscR-regulated protein YhgI [Pantoea sp. At-9b] gi|316951526|gb|ADU71001.1| IscR-regulated protein YhgI [Pantoea sp. At-9b] Length = 191 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 15/172 (8%) Query: 29 HFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFIS 87 HFS + R+F I PG + G + + L+ L ++ + Sbjct: 11 HFSKLLSKQEDGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELKFEKLSAYVDELSA 70 Query: 88 GDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVRPAVARDG 137 P + + + D D++GS + D+ +V+R++ +L ++ P +A G Sbjct: 71 --PYLEDAEI-DFVTDNLGSQLTLKAPNAKMRKVSDDAPMVERVEYLLQAQINPQLAGHG 127 Query: 138 GDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 G + DG L G C+GC TLK G+ L PE+K +R Sbjct: 128 GRVSLMEITDDGYAILQFGGGCNGCSMIDVTLKDGIEKELLAAFPELKGVRD 179 >gi|146313459|ref|YP_001178533.1| putative DNA uptake protein [Enterobacter sp. 638] gi|166990523|sp|A4WFK2|NFUA_ENT38 RecName: Full=Fe/S biogenesis protein nfuA gi|145320335|gb|ABP62482.1| HesB/YadR/YfhF-family protein [Enterobacter sp. 638] Length = 191 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 73/180 (40%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ +L Sbjct: 3 RISDSAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEASDTALKFELLT 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ +L +++ Sbjct: 63 AYVDELSA--PYLDDAEI-DFVTDQLGSQLTLKAPNAKMRKVSDDAPLMERVEYLLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + DG+ L G C+GC TLK G+ + + PE+K +R Sbjct: 120 NPQLAGHGGRVTLMEITEDGLAILQFGGGCNGCSMVDVTLKEGIEKQMLNEFPELKGVRD 179 >gi|308188428|ref|YP_003932559.1| Protein gntY [Pantoea vagans C9-1] gi|308058938|gb|ADO11110.1| Protein gntY [Pantoea vagans C9-1] Length = 191 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 15/181 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HFS + R+F I PG + G + + L+ L Sbjct: 3 RITDSAQEHFSKLLSKQEDGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELKFEKLS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ P + + + D D++GS + D+ +V+R++ +L ++ Sbjct: 63 AYVDELS--KPYLEDAEI-DFVTDNLGSQLTLKAPNAKMRKVSDDAPMVERVEYLLQAQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + +G L G C+GC TLK G+ L PE+K +R Sbjct: 120 NPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMIDVTLKDGIEKELLAAFPELKGVRD 179 Query: 189 V 189 + Sbjct: 180 I 180 >gi|320181906|gb|EFW56812.1| NfuA Fe-S protein maturation [Shigella boydii ATCC 9905] Length = 191 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ +L Sbjct: 3 RISDAAQAHFAKLLANQEKGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTALKFDLLT 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ +L +++ Sbjct: 63 AYVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYMLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + DG L G C+GC TLK G+ L + PE+K +R Sbjct: 120 NPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGVRD 179 >gi|261333257|emb|CBH16252.1| HIRA-interacting protein 5, putative [Trypanosoma brucei gambiense DAL972] Length = 337 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 5/123 (4%) Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLD 126 W L+ V ++ +H SG I + DS VV +KE++ Sbjct: 206 STHWSELKLHVSALLTDHLYSGRAHIDADAP-----HPHPDTIPQDGDSEVVVVLKELIS 260 Query: 127 NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +RP + DGGDI F G D ++ + M GAC C S+ TL+ + H+VPEV+ + Sbjct: 261 TTIRPQLQADGGDIRFVGLADSVMLVEMLGACRKCRSSKTTLRDMIERTTRHWVPEVQKV 320 Query: 187 RTV 189 V Sbjct: 321 EEV 323 Score = 54.8 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 12/136 (8%) Query: 7 DTPNPATLKFIP-GQVVLVE--GAIHFSNAKEAEISPLASR-IFSIPGIASVYFGYDFIT 62 +TPN A KF G L + + F + SPLA + ++P + V G DF+T Sbjct: 49 ETPNEACYKFFVKGVEFLPQSGNTLRF-DFDNCHQSPLAKHILHNLPMVEEVTIGRDFVT 107 Query: 63 VGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIK 122 V + D + V + G+P + +++ +++K Sbjct: 108 VRR--VDDDDTAAAVRQY--AVRLGGNPTATPEETAE--RSAALQRKVMDAMEENCEQVK 161 Query: 123 EVLDNRVRPAVARDGG 138 L R P + DGG Sbjct: 162 -TLSGRNDPNESVDGG 176 >gi|260599716|ref|YP_003212287.1| Fe/S biogenesis protein NfuA [Cronobacter turicensis z3032] gi|260218893|emb|CBA34248.1| Fe/S biogenesis protein nfuA [Cronobacter turicensis z3032] Length = 191 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 73/180 (40%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ ++ R+F I PG + G + + L+ +L Sbjct: 3 RISDAAQAHFAKLLASQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTALKFDLLT 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ +L +++ Sbjct: 63 AYVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYLLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + +G L G C+GC TLK G+ L + PE+K +R Sbjct: 120 NPQLAGHGGRVTLMEITDEGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGVRD 179 >gi|320191574|gb|EFW66224.1| NfuA Fe-S protein maturation [Escherichia coli O157:H7 str. EC1212] Length = 191 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ E + R+F I PG + G + + L+ +L Sbjct: 3 RISDAAQAHFAKLLENQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTALKFDLLT 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ +L +++ Sbjct: 63 AYVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYMLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + DG L G C+GC TLK G+ L + PE+K +R Sbjct: 120 NPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGVRD 179 >gi|295097023|emb|CBK86113.1| IscR-regulated protein YhgI [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 191 Score = 120 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ L Sbjct: 3 RISDSAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTALKFEQLT 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ +L +++ Sbjct: 63 AYVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVSDDAPLMERVEYLLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + DG+ L G C+GC TLK G+ L + PE+K +R Sbjct: 120 NPQLAGHGGRVSLMEITEDGLAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGVRD 179 >gi|271502336|ref|YP_003335362.1| IscR-regulated protein YhgI [Dickeya dadantii Ech586] gi|270345891|gb|ACZ78656.1| IscR-regulated protein YhgI [Dickeya dadantii Ech586] Length = 191 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 70/172 (40%), Gaps = 15/172 (8%) Query: 29 HFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFIS 87 HF+ + R+F I PG + G + + + L+ L ++ + Sbjct: 11 HFAKLLAKQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEPNDTELKFEKLSAYVDELSA 70 Query: 88 GDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVRPAVARDG 137 P + + + D D +GS + D+ +++R++ VL +++ P +A G Sbjct: 71 --PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVGDDAPLMERVEYVLQSQINPQLAGHG 127 Query: 138 GDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 G + +G L G C+GC TLK G+ L PE+K +R Sbjct: 128 GRVSLMEITEEGYAILQFGGGCNGCSMVDYTLKEGIEKELLEKFPELKGVRD 179 >gi|291619243|ref|YP_003521985.1| YhgI [Pantoea ananatis LMG 20103] gi|291154273|gb|ADD78857.1| YhgI [Pantoea ananatis LMG 20103] gi|327395572|dbj|BAK12994.1| thioredoxin-like protein YhgI [Pantoea ananatis AJ13355] Length = 191 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 15/181 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HFS + R+F I PG + G + + L+ L Sbjct: 3 RITDSAQEHFSKLLSKQEDGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELKFEKLS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D++GS + D+ +V+R++ +L ++ Sbjct: 63 AYVDELSA--PYLEDAEI-DFVTDNLGSQLTLKAPNAKMRKVSDDAPMVERVEYLLQAQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + DG L G C+GC TLK G+ L P++K +R Sbjct: 120 NPQLAGHGGRVSLMEITDDGFAILQFGGGCNGCSMIDVTLKDGIEKELLAAFPQLKGVRD 179 Query: 189 V 189 + Sbjct: 180 I 180 >gi|297627112|ref|YP_003688875.1| NifU-like protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922877|emb|CBL57457.1| NifU-like protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 190 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 22/191 (11%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLV-EGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 + + E T +PATL+++ +L G + +P + + ++ V G D Sbjct: 18 IALHPEATDDPATLRWVVSHHILPFAGTL--------ASAPGLDDLLA-DRVSRVVVGPD 68 Query: 60 FITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 + V DW L P V +M D + + D A+ Sbjct: 69 TLLVTLAPGSDWAELGPVVRRALMRALGHTDAWVGAA-----------DARVLSGDDALG 117 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 E+++ + GG I G +DG+V + M GAC GCP+A T+ + + L Sbjct: 118 VCADELIEGPIGDIARAHGGHIALAGVQDGVVTVKMSGACRGCPAAVITMHQRLEHQLRR 177 Query: 179 FVPEVKDIRTV 189 VP + D+R++ Sbjct: 178 RVPGLVDVRSI 188 >gi|15803918|ref|NP_289954.1| putative DNA uptake protein [Escherichia coli O157:H7 EDL933] gi|15833510|ref|NP_312283.1| DNA uptake protein [Escherichia coli O157:H7 str. Sakai] gi|16131290|ref|NP_417873.1| Fe/S biogenesis protein; possible scaffold/chaperone for damaged Fe/S proteins [Escherichia coli str. K-12 substr. MG1655] gi|24114681|ref|NP_709191.1| putative DNA uptake protein [Shigella flexneri 2a str. 301] gi|26250015|ref|NP_756055.1| putative DNA uptake protein [Escherichia coli CFT073] gi|30065301|ref|NP_839472.1| putative DNA uptake protein [Shigella flexneri 2a str. 2457T] gi|74313917|ref|YP_312336.1| putative DNA uptake protein [Shigella sonnei Ss046] gi|82545771|ref|YP_409718.1| DNA uptake protein [Shigella boydii Sb227] gi|82778770|ref|YP_405119.1| putative DNA uptake protein [Shigella dysenteriae Sd197] gi|89110596|ref|AP_004376.1| predicted gluconate transport associated protein [Escherichia coli str. K-12 substr. W3110] gi|91212889|ref|YP_542875.1| putative DNA uptake protein [Escherichia coli UTI89] gi|110643647|ref|YP_671377.1| putative DNA uptake protein [Escherichia coli 536] gi|110807249|ref|YP_690769.1| putative DNA uptake protein [Shigella flexneri 5 str. 8401] gi|117625679|ref|YP_859002.1| putative DNA uptake protein [Escherichia coli APEC O1] gi|157155730|ref|YP_001464872.1| putative DNA uptake protein [Escherichia coli E24377A] gi|157162891|ref|YP_001460209.1| putative DNA uptake protein [Escherichia coli HS] gi|168747108|ref|ZP_02772130.1| protein GntY [Escherichia coli O157:H7 str. EC4113] gi|168753167|ref|ZP_02778174.1| protein GntY [Escherichia coli O157:H7 str. EC4401] gi|168759439|ref|ZP_02784446.1| protein GntY [Escherichia coli O157:H7 str. EC4501] gi|168765762|ref|ZP_02790769.1| protein GntY [Escherichia coli O157:H7 str. EC4486] gi|168772693|ref|ZP_02797700.1| protein GntY [Escherichia coli O157:H7 str. EC4196] gi|168779498|ref|ZP_02804505.1| protein GntY [Escherichia coli O157:H7 str. EC4076] gi|168785219|ref|ZP_02810226.1| protein GntY [Escherichia coli O157:H7 str. EC869] gi|168797185|ref|ZP_02822192.1| protein GntY [Escherichia coli O157:H7 str. EC508] gi|170018350|ref|YP_001723304.1| putative DNA uptake protein [Escherichia coli ATCC 8739] gi|170082930|ref|YP_001732250.1| gluconate transport associated protein [Escherichia coli str. K-12 substr. DH10B] gi|170681204|ref|YP_001745662.1| putative DNA uptake protein [Escherichia coli SMS-3-5] gi|170766983|ref|ZP_02901436.1| protein GntY [Escherichia albertii TW07627] gi|187731025|ref|YP_001882093.1| putative DNA uptake protein [Shigella boydii CDC 3083-94] gi|188492005|ref|ZP_02999275.1| protein GntY [Escherichia coli 53638] gi|191167295|ref|ZP_03029112.1| protein GntY [Escherichia coli B7A] gi|191167903|ref|ZP_03029707.1| protein GntY [Escherichia coli B7A] gi|191171521|ref|ZP_03033069.1| protein GntY [Escherichia coli F11] gi|193061845|ref|ZP_03042942.1| protein GntY [Escherichia coli E22] gi|193068805|ref|ZP_03049765.1| protein GntY [Escherichia coli E110019] gi|194426967|ref|ZP_03059519.1| protein GntY [Escherichia coli B171] gi|194435891|ref|ZP_03067994.1| protein GntY [Escherichia coli 101-1] gi|195934903|ref|ZP_03080285.1| putative DNA uptake protein [Escherichia coli O157:H7 str. EC4024] gi|208809095|ref|ZP_03251432.1| protein GntY [Escherichia coli O157:H7 str. EC4206] gi|208811856|ref|ZP_03253185.1| protein GntY [Escherichia coli O157:H7 str. EC4045] gi|208821055|ref|ZP_03261375.1| protein GntY [Escherichia coli O157:H7 str. EC4042] gi|209396437|ref|YP_002272850.1| protein GntY [Escherichia coli O157:H7 str. EC4115] gi|209920872|ref|YP_002294956.1| putative DNA uptake protein [Escherichia coli SE11] gi|215488695|ref|YP_002331126.1| putative DNA uptake protein [Escherichia coli O127:H6 str. E2348/69] gi|217325780|ref|ZP_03441864.1| protein GntY [Escherichia coli O157:H7 str. TW14588] gi|218550672|ref|YP_002384463.1| DNA uptake protein [Escherichia fergusonii ATCC 35469] gi|218555963|ref|YP_002388876.1| putative DNA uptake protein [Escherichia coli IAI1] gi|218560472|ref|YP_002393385.1| DNA uptake protein [Escherichia coli S88] gi|218691690|ref|YP_002399902.1| putative DNA uptake protein [Escherichia coli ED1a] gi|218697097|ref|YP_002404764.1| putative DNA uptake protein [Escherichia coli 55989] gi|218707005|ref|YP_002414524.1| putative DNA uptake protein [Escherichia coli UMN026] gi|227883548|ref|ZP_04001353.1| HesB family protein [Escherichia coli 83972] gi|237703145|ref|ZP_04533626.1| Fe/S biogenesis protein nfuA [Escherichia sp. 3_2_53FAA] gi|238902505|ref|YP_002928301.1| putative gluconate transport associated protein [Escherichia coli BW2952] gi|253771757|ref|YP_003034588.1| DNA uptake protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038582|ref|ZP_04872638.1| GntY [Escherichia sp. 1_1_43] gi|254163342|ref|YP_003046450.1| putative DNA uptake protein [Escherichia coli B str. REL606] gi|254795329|ref|YP_003080166.1| putative DNA uptake protein [Escherichia coli O157:H7 str. TW14359] gi|256020759|ref|ZP_05434624.1| putative DNA uptake protein [Shigella sp. D9] gi|256025858|ref|ZP_05439723.1| putative DNA uptake protein [Escherichia sp. 4_1_40B] gi|260846198|ref|YP_003223976.1| putative gluconate transport associated protein [Escherichia coli O103:H2 str. 12009] gi|260857521|ref|YP_003231412.1| putative gluconate transport associated protein [Escherichia coli O26:H11 str. 11368] gi|260870140|ref|YP_003236542.1| putative gluconate transport associated protein [Escherichia coli O111:H- str. 11128] gi|261224695|ref|ZP_05938976.1| predicted gluconate transport associated protein [Escherichia coli O157:H7 str. FRIK2000] gi|261254410|ref|ZP_05946943.1| putative gluconate transport associated protein [Escherichia coli O157:H7 str. FRIK966] gi|291284750|ref|YP_003501568.1| Fe/S biogenesis protein nfuA [Escherichia coli O55:H7 str. CB9615] gi|293406992|ref|ZP_06650916.1| DNA uptake protein [Escherichia coli FVEC1412] gi|293412832|ref|ZP_06655500.1| IscR-regulated protein YhgI [Escherichia coli B354] gi|293416816|ref|ZP_06659453.1| IscR-regulated protein YhgI [Escherichia coli B185] gi|293453720|ref|ZP_06664139.1| IscR-regulated protein YhgI [Escherichia coli B088] gi|298382734|ref|ZP_06992329.1| DNA uptake protein [Escherichia coli FVEC1302] gi|300815387|ref|ZP_07095612.1| IscR-regulated protein YhgI [Escherichia coli MS 107-1] gi|300822787|ref|ZP_07102924.1| IscR-regulated protein YhgI [Escherichia coli MS 119-7] gi|300898897|ref|ZP_07117198.1| IscR-regulated protein YhgI [Escherichia coli MS 198-1] gi|300907442|ref|ZP_07125089.1| IscR-regulated protein YhgI [Escherichia coli MS 84-1] gi|300919299|ref|ZP_07135813.1| IscR-regulated protein YhgI [Escherichia coli MS 115-1] gi|300926895|ref|ZP_07142661.1| IscR-regulated protein YhgI [Escherichia coli MS 182-1] gi|300931053|ref|ZP_07146409.1| IscR-regulated protein YhgI [Escherichia coli MS 187-1] gi|300937287|ref|ZP_07152130.1| IscR-regulated protein YhgI [Escherichia coli MS 21-1] gi|300946843|ref|ZP_07161084.1| IscR-regulated protein YhgI [Escherichia coli MS 116-1] gi|300956744|ref|ZP_07169013.1| IscR-regulated protein YhgI [Escherichia coli MS 175-1] gi|300985358|ref|ZP_07177414.1| IscR-regulated protein YhgI [Escherichia coli MS 45-1] gi|300987300|ref|ZP_07178108.1| IscR-regulated protein YhgI [Escherichia coli MS 200-1] gi|301019565|ref|ZP_07183727.1| IscR-regulated protein YhgI [Escherichia coli MS 69-1] gi|301023028|ref|ZP_07186838.1| IscR-regulated protein YhgI [Escherichia coli MS 196-1] gi|301050374|ref|ZP_07197263.1| IscR-regulated protein YhgI [Escherichia coli MS 185-1] gi|301302293|ref|ZP_07208425.1| IscR-regulated protein YhgI [Escherichia coli MS 124-1] gi|301329725|ref|ZP_07222468.1| IscR-regulated protein YhgI [Escherichia coli MS 78-1] gi|301645854|ref|ZP_07245768.1| IscR-regulated protein YhgI [Escherichia coli MS 146-1] gi|306816248|ref|ZP_07450386.1| putative DNA uptake protein [Escherichia coli NC101] gi|307140100|ref|ZP_07499456.1| putative DNA uptake protein [Escherichia coli H736] gi|307311921|ref|ZP_07591559.1| IscR-regulated protein YhgI [Escherichia coli W] gi|309785841|ref|ZP_07680472.1| nifU-like domain protein [Shigella dysenteriae 1617] gi|309794685|ref|ZP_07689107.1| IscR-regulated protein YhgI [Escherichia coli MS 145-7] gi|312968274|ref|ZP_07782484.1| nifU-like domain protein [Escherichia coli 2362-75] gi|312972322|ref|ZP_07786496.1| nifU-like domain protein [Escherichia coli 1827-70] gi|331644114|ref|ZP_08345243.1| IscR-regulated protein YhgI [Escherichia coli H736] gi|331654992|ref|ZP_08355991.1| IscR-regulated protein YhgI [Escherichia coli M718] gi|331659703|ref|ZP_08360641.1| IscR-regulated protein YhgI [Escherichia coli TA206] gi|331665020|ref|ZP_08365921.1| IscR-regulated protein YhgI [Escherichia coli TA143] gi|331670236|ref|ZP_08371075.1| IscR-regulated protein YhgI [Escherichia coli TA271] gi|331674902|ref|ZP_08375659.1| IscR-regulated protein YhgI [Escherichia coli TA280] gi|331679478|ref|ZP_08380148.1| IscR-regulated protein YhgI [Escherichia coli H591] gi|331685056|ref|ZP_08385642.1| IscR-regulated protein YhgI [Escherichia coli H299] gi|332281961|ref|ZP_08394374.1| Fe/S biogenesis protein nfuA [Shigella sp. D9] gi|51702267|sp|P63020|NFUA_ECOLI RecName: Full=Fe/S biogenesis protein nfuA gi|51702268|sp|P63021|NFUA_ECOL6 RecName: Full=Fe/S biogenesis protein nfuA gi|51702269|sp|P63022|NFUA_ECO57 RecName: Full=Fe/S biogenesis protein nfuA gi|51702270|sp|P63023|NFUA_SHIFL RecName: Full=Fe/S biogenesis protein nfuA gi|119370608|sp|Q0TC53|NFUA_ECOL5 RecName: Full=Fe/S biogenesis protein nfuA gi|119370609|sp|Q1R5M0|NFUA_ECOUT RecName: Full=Fe/S biogenesis protein nfuA gi|119370617|sp|Q31VL8|NFUA_SHIBS RecName: Full=Fe/S biogenesis protein nfuA gi|119370618|sp|Q32AM7|NFUA_SHIDS RecName: Full=Fe/S biogenesis protein nfuA gi|119370619|sp|Q3YWL1|NFUA_SHISS RecName: Full=Fe/S biogenesis protein nfuA gi|122957141|sp|Q0SZQ1|NFUA_SHIF8 RecName: Full=Fe/S biogenesis protein nfuA gi|150383445|sp|A1AGT8|NFUA_ECOK1 RecName: Full=Fe/S biogenesis protein nfuA gi|166990521|sp|A7ZSU3|NFUA_ECO24 RecName: Full=Fe/S biogenesis protein nfuA gi|166990522|sp|A8A5M2|NFUA_ECOHS RecName: Full=Fe/S biogenesis protein nfuA gi|189041724|sp|B1IP51|NFUA_ECOLC RecName: Full=Fe/S biogenesis protein nfuA gi|254767294|sp|B7UKB9|NFUA_ECO27 RecName: Full=Fe/S biogenesis protein nfuA gi|254767295|sp|B7MDP0|NFUA_ECO45 RecName: Full=Fe/S biogenesis protein nfuA gi|254767296|sp|B7L4U4|NFUA_ECO55 RecName: Full=Fe/S biogenesis protein nfuA gi|254767297|sp|B5YTW5|NFUA_ECO5E RecName: Full=Fe/S biogenesis protein nfuA gi|254767299|sp|B7N147|NFUA_ECO81 RecName: Full=Fe/S biogenesis protein nfuA gi|254767300|sp|B7M1X0|NFUA_ECO8A RecName: Full=Fe/S biogenesis protein nfuA gi|254767301|sp|B1X760|NFUA_ECODH RecName: Full=Fe/S biogenesis protein nfuA gi|254767302|sp|B7NE19|NFUA_ECOLU RecName: Full=Fe/S biogenesis protein nfuA gi|254767303|sp|B6I2X8|NFUA_ECOSE RecName: Full=Fe/S biogenesis protein nfuA gi|254767304|sp|B1LHL4|NFUA_ECOSM RecName: Full=Fe/S biogenesis protein nfuA gi|254767306|sp|B7LSB7|NFUA_ESCF3 RecName: Full=Fe/S biogenesis protein nfuA gi|254767329|sp|B2U3M4|NFUA_SHIB3 RecName: Full=Fe/S biogenesis protein nfuA gi|259511741|sp|C4ZVW3|NFUA_ECOBW RecName: Full=Fe/S biogenesis protein nfuA gi|12518044|gb|AAG58515.1|AE005563_9 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|26110444|gb|AAN82629.1|AE016768_47 Protein yhgI [Escherichia coli CFT073] gi|606349|gb|AAA58212.1| ORF_o191 [Escherichia coli str. K-12 substr. MG1655] gi|1789819|gb|AAC76439.1| Fe/S biogenesis protein; possible scaffold/chaperone for damaged Fe/S proteins [Escherichia coli str. K-12 substr. MG1655] gi|13363730|dbj|BAB37679.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|24053889|gb|AAN44898.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30043563|gb|AAP19283.1| hypothetical protein S4328 [Shigella flexneri 2a str. 2457T] gi|73857394|gb|AAZ90101.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81242918|gb|ABB63628.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|81247182|gb|ABB67890.1| conserved hypothetical protein [Shigella boydii Sb227] gi|85676627|dbj|BAE77877.1| predicted gluconate transport associated protein [Escherichia coli str. K12 substr. W3110] gi|91074463|gb|ABE09344.1| hypothetical protein UTI89_C3915 [Escherichia coli UTI89] gi|110345239|gb|ABG71476.1| hypothetical protein YhgI (HesB-like domain) [Escherichia coli 536] gi|110616797|gb|ABF05464.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|115514803|gb|ABJ02878.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|157068571|gb|ABV07826.1| protein GntY [Escherichia coli HS] gi|157077760|gb|ABV17468.1| protein GntY [Escherichia coli E24377A] gi|169753278|gb|ACA75977.1| IscR-regulated protein YhgI [Escherichia coli ATCC 8739] gi|169890765|gb|ACB04472.1| predicted gluconate transport associated protein [Escherichia coli str. K-12 substr. DH10B] gi|170124421|gb|EDS93352.1| protein GntY [Escherichia albertii TW07627] gi|170518922|gb|ACB17100.1| protein GntY [Escherichia coli SMS-3-5] gi|187428017|gb|ACD07291.1| protein GntY [Shigella boydii CDC 3083-94] gi|187771744|gb|EDU35588.1| protein GntY [Escherichia coli O157:H7 str. EC4196] gi|188018489|gb|EDU56611.1| protein GntY [Escherichia coli O157:H7 str. EC4113] gi|188487204|gb|EDU62307.1| protein GntY [Escherichia coli 53638] gi|189002308|gb|EDU71294.1| protein GntY [Escherichia coli O157:H7 str. EC4076] gi|189359050|gb|EDU77469.1| protein GntY [Escherichia coli O157:H7 str. EC4401] gi|189364704|gb|EDU83123.1| protein GntY [Escherichia coli O157:H7 str. EC4486] gi|189369561|gb|EDU87977.1| protein GntY [Escherichia coli O157:H7 str. EC4501] gi|189374586|gb|EDU93002.1| protein GntY [Escherichia coli O157:H7 str. EC869] gi|189380102|gb|EDU98518.1| protein GntY [Escherichia coli O157:H7 str. EC508] gi|190902076|gb|EDV61821.1| protein GntY [Escherichia coli B7A] gi|190902647|gb|EDV62379.1| protein GntY [Escherichia coli B7A] gi|190908148|gb|EDV67739.1| protein GntY [Escherichia coli F11] gi|192932635|gb|EDV85232.1| protein GntY [Escherichia coli E22] gi|192957881|gb|EDV88324.1| protein GntY [Escherichia coli E110019] gi|194414928|gb|EDX31198.1| protein GntY [Escherichia coli B171] gi|194425434|gb|EDX41418.1| protein GntY [Escherichia coli 101-1] gi|208728896|gb|EDZ78497.1| protein GntY [Escherichia coli O157:H7 str. EC4206] gi|208733133|gb|EDZ81820.1| protein GntY [Escherichia coli O157:H7 str. EC4045] gi|208741178|gb|EDZ88860.1| protein GntY [Escherichia coli O157:H7 str. EC4042] gi|209157837|gb|ACI35270.1| protein GntY [Escherichia coli O157:H7 str. EC4115] gi|209756428|gb|ACI76526.1| hypothetical protein ECs4256 [Escherichia coli] gi|209756430|gb|ACI76527.1| hypothetical protein ECs4256 [Escherichia coli] gi|209756432|gb|ACI76528.1| hypothetical protein ECs4256 [Escherichia coli] gi|209756434|gb|ACI76529.1| hypothetical protein ECs4256 [Escherichia coli] gi|209756436|gb|ACI76530.1| hypothetical protein ECs4256 [Escherichia coli] gi|209914131|dbj|BAG79205.1| conserved hypothetical protein [Escherichia coli SE11] gi|215266767|emb|CAS11207.1| predicted gluconate transport associated protein [Escherichia coli O127:H6 str. E2348/69] gi|217322001|gb|EEC30425.1| protein GntY [Escherichia coli O157:H7 str. TW14588] gi|218353829|emb|CAV00186.1| putative gluconate transport associated protein [Escherichia coli 55989] gi|218358213|emb|CAQ90860.1| putative gluconate transport associated protein [Escherichia fergusonii ATCC 35469] gi|218362731|emb|CAR00357.1| putative gluconate transport associated protein [Escherichia coli IAI1] gi|218367241|emb|CAR05015.1| putative gluconate transport associated protein [Escherichia coli S88] gi|218429254|emb|CAR10065.1| putative gluconate transport associated protein [Escherichia coli ED1a] gi|218434102|emb|CAR15019.1| putative gluconate transport associated protein [Escherichia coli UMN026] gi|226839088|gb|EEH71111.1| GntY [Escherichia sp. 1_1_43] gi|226902409|gb|EEH88668.1| Fe/S biogenesis protein nfuA [Escherichia sp. 3_2_53FAA] gi|227839427|gb|EEJ49893.1| HesB family protein [Escherichia coli 83972] gi|238862428|gb|ACR64426.1| predicted gluconate transport associated protein [Escherichia coli BW2952] gi|242378937|emb|CAQ33735.1| iron-sulfur cluster scaffold protein [Escherichia coli BL21(DE3)] gi|253322801|gb|ACT27403.1| IscR-regulated protein YhgI [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975243|gb|ACT40914.1| predicted gluconate transport associated protein [Escherichia coli B str. REL606] gi|253979399|gb|ACT45069.1| predicted gluconate transport associated protein [Escherichia coli BL21(DE3)] gi|254594729|gb|ACT74090.1| predicted gluconate transport associated protein [Escherichia coli O157:H7 str. TW14359] gi|257756170|dbj|BAI27672.1| predicted gluconate transport associated protein [Escherichia coli O26:H11 str. 11368] gi|257761345|dbj|BAI32842.1| predicted gluconate transport associated protein [Escherichia coli O103:H2 str. 12009] gi|257766496|dbj|BAI37991.1| predicted gluconate transport associated protein [Escherichia coli O111:H- str. 11128] gi|260447567|gb|ACX37989.1| IscR-regulated protein YhgI [Escherichia coli DH1] gi|281180446|dbj|BAI56776.1| conserved hypothetical protein [Escherichia coli SE15] gi|281602769|gb|ADA75753.1| predicted gluconate transport-associated protein [Shigella flexneri 2002017] gi|284822069|gb|ADB98039.1| conserved hypothetical protein [Escherichia coli] gi|284923406|emb|CBG36500.1| putative competence protein [Escherichia coli 042] gi|290764623|gb|ADD58584.1| Fe/S biogenesis protein nfuA [Escherichia coli O55:H7 str. CB9615] gi|291321846|gb|EFE61277.1| IscR-regulated protein YhgI [Escherichia coli B088] gi|291425803|gb|EFE98837.1| DNA uptake protein [Escherichia coli FVEC1412] gi|291431392|gb|EFF04377.1| IscR-regulated protein YhgI [Escherichia coli B185] gi|291468479|gb|EFF10972.1| IscR-regulated protein YhgI [Escherichia coli B354] gi|294494004|gb|ADE92760.1| protein GntY [Escherichia coli IHE3034] gi|298276570|gb|EFI18088.1| DNA uptake protein [Escherichia coli FVEC1302] gi|299880991|gb|EFI89202.1| IscR-regulated protein YhgI [Escherichia coli MS 196-1] gi|300298003|gb|EFJ54388.1| IscR-regulated protein YhgI [Escherichia coli MS 185-1] gi|300306168|gb|EFJ60688.1| IscR-regulated protein YhgI [Escherichia coli MS 200-1] gi|300316464|gb|EFJ66248.1| IscR-regulated protein YhgI [Escherichia coli MS 175-1] gi|300357459|gb|EFJ73329.1| IscR-regulated protein YhgI [Escherichia coli MS 198-1] gi|300399190|gb|EFJ82728.1| IscR-regulated protein YhgI [Escherichia coli MS 69-1] gi|300400857|gb|EFJ84395.1| IscR-regulated protein YhgI [Escherichia coli MS 84-1] gi|300408099|gb|EFJ91637.1| IscR-regulated protein YhgI [Escherichia coli MS 45-1] gi|300413614|gb|EFJ96924.1| IscR-regulated protein YhgI [Escherichia coli MS 115-1] gi|300417099|gb|EFK00410.1| IscR-regulated protein YhgI [Escherichia coli MS 182-1] gi|300453498|gb|EFK17118.1| IscR-regulated protein YhgI [Escherichia coli MS 116-1] gi|300457646|gb|EFK21139.1| IscR-regulated protein YhgI [Escherichia coli MS 21-1] gi|300461108|gb|EFK24601.1| IscR-regulated protein YhgI [Escherichia coli MS 187-1] gi|300524787|gb|EFK45856.1| IscR-regulated protein YhgI [Escherichia coli MS 119-7] gi|300532279|gb|EFK53341.1| IscR-regulated protein YhgI [Escherichia coli MS 107-1] gi|300842456|gb|EFK70216.1| IscR-regulated protein YhgI [Escherichia coli MS 124-1] gi|300844197|gb|EFK71957.1| IscR-regulated protein YhgI [Escherichia coli MS 78-1] gi|301075843|gb|EFK90649.1| IscR-regulated protein YhgI [Escherichia coli MS 146-1] gi|305850644|gb|EFM51101.1| putative DNA uptake protein [Escherichia coli NC101] gi|306908065|gb|EFN38565.1| IscR-regulated protein YhgI [Escherichia coli W] gi|307555500|gb|ADN48275.1| putative thioredoxin-like protein [Escherichia coli ABU 83972] gi|307628476|gb|ADN72780.1| putative DNA uptake protein [Escherichia coli UM146] gi|308121735|gb|EFO58997.1| IscR-regulated protein YhgI [Escherichia coli MS 145-7] gi|308926961|gb|EFP72437.1| nifU-like domain protein [Shigella dysenteriae 1617] gi|309703824|emb|CBJ03165.1| putative competence protein [Escherichia coli ETEC H10407] gi|310334699|gb|EFQ00904.1| nifU-like domain protein [Escherichia coli 1827-70] gi|312287099|gb|EFR15009.1| nifU-like domain protein [Escherichia coli 2362-75] gi|312947962|gb|ADR28789.1| putative DNA uptake protein [Escherichia coli O83:H1 str. NRG 857C] gi|313647284|gb|EFS11736.1| nifU-like domain protein [Shigella flexneri 2a str. 2457T] gi|315062692|gb|ADT77019.1| predicted gluconate transport associated protein [Escherichia coli W] gi|315137990|dbj|BAJ45149.1| Fe/S biogenesis protein nfuA [Escherichia coli DH1] gi|315256005|gb|EFU35973.1| IscR-regulated protein YhgI [Escherichia coli MS 85-1] gi|315286086|gb|EFU45524.1| IscR-regulated protein YhgI [Escherichia coli MS 110-3] gi|315291745|gb|EFU51101.1| IscR-regulated protein YhgI [Escherichia coli MS 153-1] gi|315295925|gb|EFU55234.1| IscR-regulated protein YhgI [Escherichia coli MS 16-3] gi|315614682|gb|EFU95322.1| nifU-like domain protein [Escherichia coli 3431] gi|320175494|gb|EFW50592.1| NfuA Fe-S protein maturation [Shigella dysenteriae CDC 74-1112] gi|320185943|gb|EFW60692.1| NfuA Fe-S protein maturation [Shigella flexneri CDC 796-83] gi|320197373|gb|EFW71988.1| NfuA Fe-S protein maturation [Escherichia coli WV_060327] gi|320199587|gb|EFW74177.1| NfuA Fe-S protein maturation [Escherichia coli EC4100B] gi|320639696|gb|EFX09290.1| Fe/S biogenesis protein NfuA [Escherichia coli O157:H7 str. G5101] gi|320645194|gb|EFX14210.1| Fe/S biogenesis protein NfuA [Escherichia coli O157:H- str. 493-89] gi|320650505|gb|EFX18971.1| Fe/S biogenesis protein NfuA [Escherichia coli O157:H- str. H 2687] gi|320655697|gb|EFX23620.1| Fe/S biogenesis protein NfuA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661481|gb|EFX28896.1| Fe/S biogenesis protein NfuA [Escherichia coli O55:H7 str. USDA 5905] gi|320666504|gb|EFX33487.1| Fe/S biogenesis protein NfuA [Escherichia coli O157:H7 str. LSU-61] gi|323154249|gb|EFZ40452.1| nifU-like domain protein [Escherichia coli EPECa14] gi|323162799|gb|EFZ48636.1| nifU-like domain protein [Escherichia coli E128010] gi|323164978|gb|EFZ50769.1| nifU-like domain protein [Shigella sonnei 53G] gi|323174049|gb|EFZ59677.1| nifU-like domain protein [Escherichia coli LT-68] gi|323179060|gb|EFZ64634.1| nifU-like domain protein [Escherichia coli 1180] gi|323182875|gb|EFZ68276.1| nifU-like domain protein [Escherichia coli 1357] gi|323188996|gb|EFZ74280.1| nifU-like domain protein [Escherichia coli RN587/1] gi|323376720|gb|ADX48988.1| IscR-regulated protein YhgI [Escherichia coli KO11] gi|323934596|gb|EGB30996.1| IscR-regulated protein YhgI [Escherichia coli E1520] gi|323939366|gb|EGB35577.1| IscR-regulated protein YhgI [Escherichia coli E482] gi|323944364|gb|EGB40439.1| IscR-regulated protein YhgI [Escherichia coli H120] gi|323950071|gb|EGB45954.1| IscR-regulated protein YhgI [Escherichia coli H252] gi|323954649|gb|EGB50431.1| IscR-regulated protein YhgI [Escherichia coli H263] gi|323959586|gb|EGB55238.1| IscR-regulated protein YhgI [Escherichia coli H489] gi|323966227|gb|EGB61663.1| IscR-regulated protein YhgI [Escherichia coli M863] gi|323970012|gb|EGB65287.1| IscR-regulated protein YhgI [Escherichia coli TA007] gi|323974782|gb|EGB69894.1| IscR-regulated protein YhgI [Escherichia coli TW10509] gi|324009392|gb|EGB78611.1| IscR-regulated protein YhgI [Escherichia coli MS 57-2] gi|324014596|gb|EGB83815.1| IscR-regulated protein YhgI [Escherichia coli MS 60-1] gi|324018651|gb|EGB87870.1| IscR-regulated protein YhgI [Escherichia coli MS 117-3] gi|324111727|gb|EGC05707.1| IscR-regulated protein YhgI [Escherichia fergusonii B253] gi|324116389|gb|EGC10308.1| IscR-regulated protein YhgI [Escherichia coli E1167] gi|325498956|gb|EGC96815.1| putative DNA uptake protein [Escherichia fergusonii ECD227] gi|326337622|gb|EGD61457.1| NfuA Fe-S protein maturation [Escherichia coli O157:H7 str. 1044] gi|326344627|gb|EGD68376.1| NfuA Fe-S protein maturation [Escherichia coli O157:H7 str. 1125] gi|327251050|gb|EGE62743.1| nifU-like domain protein [Escherichia coli STEC_7v] gi|330909447|gb|EGH37961.1| NfuA Fe-S protein maturation [Escherichia coli AA86] gi|331036408|gb|EGI08634.1| IscR-regulated protein YhgI [Escherichia coli H736] gi|331047007|gb|EGI19085.1| IscR-regulated protein YhgI [Escherichia coli M718] gi|331052918|gb|EGI24951.1| IscR-regulated protein YhgI [Escherichia coli TA206] gi|331057530|gb|EGI29516.1| IscR-regulated protein YhgI [Escherichia coli TA143] gi|331062298|gb|EGI34218.1| IscR-regulated protein YhgI [Escherichia coli TA271] gi|331067811|gb|EGI39209.1| IscR-regulated protein YhgI [Escherichia coli TA280] gi|331072650|gb|EGI43975.1| IscR-regulated protein YhgI [Escherichia coli H591] gi|331077427|gb|EGI48639.1| IscR-regulated protein YhgI [Escherichia coli H299] gi|332085565|gb|EGI90731.1| nifU-like domain protein [Shigella boydii 5216-82] gi|332090470|gb|EGI95568.1| nifU-like domain protein [Shigella boydii 3594-74] gi|332104313|gb|EGJ07659.1| Fe/S biogenesis protein nfuA [Shigella sp. D9] gi|332345367|gb|AEE58701.1| conserved hypothetical protein [Escherichia coli UMNK88] gi|332749484|gb|EGJ79901.1| nifU-like domain protein [Shigella flexneri K-671] gi|332750331|gb|EGJ80742.1| nifU-like domain protein [Shigella flexneri 4343-70] gi|332751428|gb|EGJ81831.1| nifU-like domain protein [Shigella flexneri 2747-71] gi|332763599|gb|EGJ93838.1| iron-sulfur cluster scaffold protein [Shigella flexneri 2930-71] gi|332996395|gb|EGK16022.1| nifU-like domain protein [Shigella flexneri VA-6] gi|332996634|gb|EGK16259.1| nifU-like domain protein [Shigella flexneri K-272] gi|332997137|gb|EGK16753.1| nifU-like domain protein [Shigella flexneri K-218] gi|333012337|gb|EGK31718.1| nifU-like domain protein [Shigella flexneri K-304] gi|333013043|gb|EGK32419.1| nifU-like domain protein [Shigella flexneri K-227] Length = 191 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ +L Sbjct: 3 RISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTALKFDLLT 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ +L +++ Sbjct: 63 AYVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYMLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + DG L G C+GC TLK G+ L + PE+K +R Sbjct: 120 NPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGVRD 179 >gi|161505922|ref|YP_001573034.1| putative DNA uptake protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189041726|sp|A9MMB3|NFUA_SALAR RecName: Full=Fe/S biogenesis protein nfuA gi|160867269|gb|ABX23892.1| hypothetical protein SARI_04103 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 191 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ +L Sbjct: 3 RISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTALKFDLLT 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ VL +++ Sbjct: 63 AYVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYVLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + +G L G C+GC TLK G+ L + PE+K +R Sbjct: 120 NPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGVRD 179 >gi|331649212|ref|ZP_08350298.1| IscR-regulated protein YhgI [Escherichia coli M605] gi|331041710|gb|EGI13854.1| IscR-regulated protein YhgI [Escherichia coli M605] Length = 191 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ +L Sbjct: 3 RISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTALKFDLLT 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ +L +++ Sbjct: 63 AYIDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYMLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + DG L G C+GC TLK G+ L + PE+K +R Sbjct: 120 NPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGVRD 179 >gi|156936423|ref|YP_001440339.1| putative DNA uptake protein [Cronobacter sakazakii ATCC BAA-894] gi|166990524|sp|A7ME80|NFUA_ENTS8 RecName: Full=Fe/S biogenesis protein nfuA gi|156534677|gb|ABU79503.1| hypothetical protein ESA_04324 [Cronobacter sakazakii ATCC BAA-894] Length = 191 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 73/180 (40%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ ++ R+F I PG + G + + L+ +L Sbjct: 3 RISDAAQAHFAKLLASQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTALKFDLLT 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ +L +++ Sbjct: 63 AYVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYMLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + +G L G C+GC TLK G+ L + PE+K +R Sbjct: 120 NPQLAGHGGRVTLMEITDEGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGVRD 179 >gi|261341914|ref|ZP_05969772.1| IscR-regulated protein YhgI [Enterobacter cancerogenus ATCC 35316] gi|288315816|gb|EFC54754.1| IscR-regulated protein YhgI [Enterobacter cancerogenus ATCC 35316] Length = 191 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ L Sbjct: 3 RISDSAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTALKFEQLT 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ +L +++ Sbjct: 63 AYVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVSDDAPLMERVEYMLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + DG+ L G C+GC TLK G+ L + PE+K +R Sbjct: 120 NPQLAGHGGRVTLMEITEDGLAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGVRD 179 >gi|239993300|ref|ZP_04713824.1| putative DNA uptake protein [Alteromonas macleodii ATCC 27126] Length = 192 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 67/180 (37%), Gaps = 14/180 (7%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + E HF + S R+F + PG +S G + D + R P G Sbjct: 3 TISEEAQAHFVKLLSKQESGTNIRVFVVNPGTSSAECGVSYCPP--DAVEETDTRLPFNG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLD---------DMGSGDFIESDSAVVQRIKEVLDNRVR 130 P + + + + D+ +++RI ++++ + Sbjct: 61 FDAVVDEESAPYLEEAEIDYVTDQMGSQLTLKAPNAKARKVSDDAPLIERINYMIESEIN 120 Query: 131 PAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIRT 188 P +A GG++V DG L G C+GC TLK G+ ++ F E+K +R Sbjct: 121 PQLASHGGNVVLTELTDDGYAILQFGGGCNGCSMVDVTLKEGIEKQMVEQFAGELKGVRD 180 >gi|194430959|ref|ZP_03063252.1| protein GntY [Shigella dysenteriae 1012] gi|194420414|gb|EDX36490.1| protein GntY [Shigella dysenteriae 1012] gi|332085774|gb|EGI90938.1| nifU-like domain protein [Shigella dysenteriae 155-74] Length = 191 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ +L Sbjct: 3 RISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTALKFDLLT 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ +L +++ Sbjct: 63 AYVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYMLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + DG L G C+GC TLK G+ L + PE+K +R Sbjct: 120 NPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLKEGIEKHLLNEFPELKGVRD 179 >gi|317494418|ref|ZP_07952832.1| IscR-regulated protein YhgI [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917668|gb|EFV39013.1| IscR-regulated protein YhgI [Enterobacteriaceae bacterium 9_2_54FAA] Length = 191 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + + R+F I PG + G + + + L L Sbjct: 3 RITEAAQEHFAKLLANQEAGTQIRVFVINPGTPTAECGVSYCPPDAVEANDTKLDFEKLS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS ++ D+ +++R++ VL +++ Sbjct: 63 AYVDDVSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVDDDAPLIERVEYVLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + DGI L G C+GC TLK G+ L PE+K +R Sbjct: 120 NPQLAGHGGKVTLMEITEDGIAILQFGGGCNGCSMVDYTLKEGIEKELLQKFPELKGVRD 179 >gi|56459359|ref|YP_154640.1| putative DNA uptake protein [Idiomarina loihiensis L2TR] gi|81363232|sp|Q5QZC8|NFUA_IDILO RecName: Full=Fe/S biogenesis protein nfuA gi|56178369|gb|AAV81091.1| hypothetical protein IL0248 [Idiomarina loihiensis L2TR] Length = 192 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 14/181 (7%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F + PG+A+ G + D + + R P G Sbjct: 3 RISEAAQSHFKKLLADQPDGTCIRVFVVNPGMANAECGVSYCPP--DSVEPDDERLPFNG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLD---------DMGSGDFIESDSAVVQRIKEVLDNRVR 130 P + + + + + + D+ +++R++ V+ + Sbjct: 61 FDAVVDSGSAPFLEDAAIDFEEQEMGSQLTLKAPNAKARKVADDAPLIERVEYVIQAEIN 120 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRT 188 P +A GG ++ DG+ L G C+GC TLK G+ L P EVK +R Sbjct: 121 PQLASHGGQVMISEITDDGVAILQFGGGCNGCSMIDVTLKNGIEKELLERFPEEVKGVRD 180 Query: 189 V 189 + Sbjct: 181 I 181 >gi|293393405|ref|ZP_06637716.1| Fe/S-biogenesis protein NfuA [Serratia odorifera DSM 4582] gi|291424006|gb|EFE97224.1| Fe/S-biogenesis protein NfuA [Serratia odorifera DSM 4582] Length = 191 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ L Sbjct: 3 RITDTAQEHFAKLLANQEEGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELKFDKLS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS ++ ++ +++R++ VL +++ Sbjct: 63 AYVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVDENAPLMERVEYVLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + DG+ L G C+GC TLK G+ L PE+K +R Sbjct: 120 NPQLAGHGGRVTLMEITEDGLAILQFGGGCNGCSMVDVTLKEGIEKELLQKFPELKGVRD 179 >gi|21430120|gb|AAM50738.1| GM32035p [Drosophila melanogaster] Length = 104 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 39/70 (55%), Positives = 50/70 (71%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 IKE+LD R+RP V DGGDIVF GY G+V L M+G+CS CPS+ TLK GV N+L + Sbjct: 2 MIKELLDTRIRPTVQEDGGDIVFMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFY 61 Query: 180 VPEVKDIRTV 189 +PEV+ + V Sbjct: 62 IPEVESVEQV 71 >gi|71748540|ref|XP_823325.1| HIRA-interacting protein 5 [Trypanosoma brucei TREU927] gi|70832993|gb|EAN78497.1| HIRA-interacting protein 5, putative [Trypanosoma brucei] Length = 243 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 5/123 (4%) Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLD 126 W L+ V ++ +H SG I + DS VV +KE++ Sbjct: 112 STHWSELKLHVSALLTDHLYSGRAHIDADAP-----HPHPDTIPQDGDSEVVVVLKELIS 166 Query: 127 NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +RP + DGGDI F G D ++ + M GAC C S+ TL+ + H+VPEV+ + Sbjct: 167 TTIRPQLQADGGDIRFVGLADSVMLVEMLGACRKCRSSKTTLRDMIERTTRHWVPEVQKV 226 Query: 187 RTV 189 V Sbjct: 227 EEV 229 >gi|157148997|ref|YP_001456316.1| putative DNA uptake protein [Citrobacter koseri ATCC BAA-895] gi|166990520|sp|A8AQW7|NFUA_CITK8 RecName: Full=Fe/S biogenesis protein nfuA gi|157086202|gb|ABV15880.1| hypothetical protein CKO_04835 [Citrobacter koseri ATCC BAA-895] Length = 191 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 72/179 (40%), Gaps = 15/179 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ + R+F I PG + G + + L+ +L Sbjct: 4 ISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEASDTALKFDLLTA 63 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 ++ + P + + + D D +GS + D+ +++R++ +L +++ Sbjct: 64 YVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYMLQSQIN 120 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + +G L G C+GC TLK G+ L + PE+K +R Sbjct: 121 PQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGVRD 179 >gi|16766799|ref|NP_462414.1| DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62182013|ref|YP_218430.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161616554|ref|YP_001590519.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549282|ref|ZP_02343041.1| protein GntY [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990716|ref|ZP_02571815.1| protein GntY [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232650|ref|ZP_02657708.1| protein GntY [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235106|ref|ZP_02660164.1| protein GntY [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168241653|ref|ZP_02666585.1| protein GntY [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168260762|ref|ZP_02682735.1| protein GntY [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465218|ref|ZP_02699110.1| protein GntY [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818674|ref|ZP_02830674.1| protein GntY [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445195|ref|YP_002042763.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448010|ref|YP_002047536.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472075|ref|ZP_03078059.1| protein GntY [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735692|ref|YP_002116454.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247966|ref|YP_002148435.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265281|ref|ZP_03165355.1| protein GntY [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244988|ref|YP_002217471.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387996|ref|ZP_03214608.1| protein GntY [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928851|ref|ZP_03220050.1| protein GntY [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354865|ref|YP_002228666.1| DNA uptake protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858751|ref|YP_002245402.1| DNA uptake protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213426878|ref|ZP_03359628.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|224585306|ref|YP_002639105.1| DNA uptake protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910484|ref|ZP_04654321.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289824843|ref|ZP_06544286.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|51701441|sp|Q8ZLI7|NFUA_SALTY RecName: Full=Fe/S biogenesis protein nfuA gi|75480222|sp|Q57IW3|NFUA_SALCH RecName: Full=Fe/S biogenesis protein nfuA gi|189041727|sp|A9MTT1|NFUA_SALPB RecName: Full=Fe/S biogenesis protein nfuA gi|254767317|sp|B5F8M8|NFUA_SALA4 RecName: Full=Fe/S biogenesis protein nfuA gi|254767318|sp|B5FKD2|NFUA_SALDC RecName: Full=Fe/S biogenesis protein nfuA gi|254767319|sp|B5R371|NFUA_SALEP RecName: Full=Fe/S biogenesis protein nfuA gi|254767320|sp|B5R7K3|NFUA_SALG2 RecName: Full=Fe/S biogenesis protein nfuA gi|254767321|sp|B4TKT8|NFUA_SALHS RecName: Full=Fe/S biogenesis protein nfuA gi|254767322|sp|B4SVL5|NFUA_SALNS RecName: Full=Fe/S biogenesis protein nfuA gi|254767323|sp|C0Q0I7|NFUA_SALPC RecName: Full=Fe/S biogenesis protein nfuA gi|254767325|sp|B4TY71|NFUA_SALSV RecName: Full=Fe/S biogenesis protein nfuA gi|16422070|gb|AAL22373.1| putative thioredoxin-like proteins and domain protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62129646|gb|AAX67349.1| putative Thioredoxin-like proteins and domain [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365918|gb|ABX69686.1| hypothetical protein SPAB_04370 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403858|gb|ACF64080.1| protein GntY [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406314|gb|ACF66533.1| protein GntY [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458439|gb|EDX47278.1| protein GntY [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711194|gb|ACF90415.1| protein GntY [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632440|gb|EDX50924.1| protein GntY [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197211669|gb|ACH49066.1| protein GntY [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243536|gb|EDY26156.1| protein GntY [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291455|gb|EDY30807.1| protein GntY [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939504|gb|ACH76837.1| protein GntY [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605094|gb|EDZ03639.1| protein GntY [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322284|gb|EDZ07482.1| protein GntY [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274646|emb|CAR39700.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325543|gb|EDZ13382.1| protein GntY [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330667|gb|EDZ17431.1| protein GntY [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333139|gb|EDZ19903.1| protein GntY [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338772|gb|EDZ25536.1| protein GntY [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344656|gb|EDZ31420.1| protein GntY [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350434|gb|EDZ37065.1| protein GntY [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710554|emb|CAR34912.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469834|gb|ACN47664.1| hypothetical protein SPC_3581 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248666|emb|CBG26504.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995733|gb|ACY90618.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160054|emb|CBW19573.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914535|dbj|BAJ38509.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087927|emb|CBY97689.1| Fe/S biogenesis protein nfuA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226562|gb|EFX51612.1| NfuA Fe-S protein maturation [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614115|gb|EFY11051.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618007|gb|EFY14900.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625379|gb|EFY22205.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629844|gb|EFY26617.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632267|gb|EFY29018.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636382|gb|EFY33089.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643238|gb|EFY39807.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644760|gb|EFY41296.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651215|gb|EFY47599.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654917|gb|EFY51232.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659174|gb|EFY55426.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663125|gb|EFY59329.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668611|gb|EFY64764.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674585|gb|EFY70678.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678209|gb|EFY74270.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682534|gb|EFY78555.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684247|gb|EFY80253.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716501|gb|EFZ08072.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131871|gb|ADX19301.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192198|gb|EFZ77430.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196376|gb|EFZ81528.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201823|gb|EFZ86886.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206365|gb|EFZ91326.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211958|gb|EFZ96785.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216864|gb|EGA01587.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222263|gb|EGA06646.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224278|gb|EGA08567.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228206|gb|EGA12337.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233527|gb|EGA17620.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237011|gb|EGA21078.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243774|gb|EGA27790.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245984|gb|EGA29971.1| Fe/S biogenesis protein NfuA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250760|gb|EGA34638.1| Fe/S biogenesis protein NfuA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255771|gb|EGA39521.1| Fe/S biogenesis protein NfuA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261371|gb|EGA44957.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267656|gb|EGA51138.1| Fe/S biogenesis protein NfuA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268536|gb|EGA52003.1| Fe/S biogenesis protein NfuA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625252|gb|EGE31597.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630011|gb|EGE36354.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332990363|gb|AEF09346.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 191 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ +L Sbjct: 3 RISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTALKFDLLT 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ L +++ Sbjct: 63 AYVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYALQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + +G L G C+GC TLK G+ L + PE+K +R Sbjct: 120 NPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGVRD 179 >gi|16762776|ref|NP_458393.1| DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144263|ref|NP_807605.1| DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213023194|ref|ZP_03337641.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213420971|ref|ZP_03354037.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213612531|ref|ZP_03370357.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647818|ref|ZP_03377871.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|51701440|sp|Q8Z223|NFUA_SALTI RecName: Full=Fe/S biogenesis protein nfuA gi|25356753|pir||AC0997 conserved hypothetical protein STY4285 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505082|emb|CAD08103.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139900|gb|AAO71465.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 191 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ +L Sbjct: 3 RISDAAQAHFAKLLANQKEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTALKFDLLT 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ L +++ Sbjct: 63 AYVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYALQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + +G L G C+GC TLK G+ L + PE+K +R Sbjct: 120 NPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGVRD 179 >gi|253987620|ref|YP_003038976.1| DNA uptake protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779070|emb|CAQ82230.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 191 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 70/179 (39%), Gaps = 15/179 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ + R+F I PG + G + + L+ L Sbjct: 4 ITEAAQAHFAKLLANQEPGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELKFEKLSA 63 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 ++ + P + + D D +GS + D+ +V+R++ VL +++ Sbjct: 64 YVDELSA--PFLEEAEI-DFVTDQLGSQLTLKAPNAKMRKVSDDAPLVERVEYVLQSQIN 120 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + +G L G C+GC TLK G+ L + PE+K ++ Sbjct: 121 PQLAGHGGRVSLMEITDEGFAILQFGGGCNGCSMVDVTLKEGIEKELLNMFPELKGVKD 179 >gi|218702159|ref|YP_002409788.1| putative DNA uptake protein [Escherichia coli IAI39] gi|254767298|sp|B7NMH9|NFUA_ECO7I RecName: Full=Fe/S biogenesis protein nfuA gi|218372145|emb|CAR20007.1| putative gluconate transport associated protein [Escherichia coli IAI39] Length = 191 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ +L Sbjct: 3 RISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTALKFDLLT 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ +L +++ Sbjct: 63 AYVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYMLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + DG L G C+ C TLK G+ L + PE+K +R Sbjct: 120 NPQLAGHGGRVSLMEITEDGYAILQFGGGCNSCSMVDVTLKEGIEKQLLNEFPELKGVRD 179 >gi|222035115|emb|CAP77860.1| Protein gntY [Escherichia coli LF82] Length = 191 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ +L Sbjct: 3 RISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTALKFDLLT 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ +L +++ Sbjct: 63 AYVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYMLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + G L G C+GC TLK G+ L + PE+K +R Sbjct: 120 NPQLAGHGGRVSLMEITEGGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGVRD 179 >gi|307132919|ref|YP_003884935.1| Fe-S biogenesis protein [Dickeya dadantii 3937] gi|306530448|gb|ADN00379.1| Fe-S biogenesis protein [Dickeya dadantii 3937] Length = 191 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 15/172 (8%) Query: 29 HFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFIS 87 HF+ + R+F I PG + G + + + L+ L ++ + Sbjct: 11 HFAKLLAKQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEPNDTELKFEKLSAYVDELST 70 Query: 88 GDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVRPAVARDG 137 P + + + D D +GS + D+ +++R++ VL +++ P +A G Sbjct: 71 --PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVGDDAPLMERVEYVLQSQINPQLAGHG 127 Query: 138 GDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 G + +G L G C+GC TLK G+ L PE+ +R Sbjct: 128 GRVTLMEITEEGYAILQFGGGCNGCSMVDYTLKEGIEKELLQKFPELTGVRD 179 >gi|251787885|ref|YP_003002606.1| putative DNA uptake protein [Dickeya zeae Ech1591] gi|247536506|gb|ACT05127.1| IscR-regulated protein YhgI [Dickeya zeae Ech1591] Length = 191 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 15/172 (8%) Query: 29 HFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFIS 87 HF+ + R+F I PG + G + + + L+ L ++ + Sbjct: 11 HFAKLLVKQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEPNDTELKFEKLSAYVDELSA 70 Query: 88 GDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVRPAVARDG 137 P + + D D +GS + D+ +++R++ VL +++ P +A G Sbjct: 71 --PYLEEAEI-DFVTDQLGSQLTLKAPNAKMRKVGDDAPLMERVEYVLQSQINPQLAGHG 127 Query: 138 GDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 G + +G L G C+GC TLK G+ L PE+K +R Sbjct: 128 GRVTLMEITEEGYAILQFGGGCNGCSMVDYTLKEGIEKELLQKFPELKGVRD 179 >gi|296105108|ref|YP_003615254.1| putative DNA uptake protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059567|gb|ADF64305.1| putative DNA uptake protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 191 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ L Sbjct: 3 RISDSAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTALKFDQLT 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ +L +++ Sbjct: 63 AYVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVSDDAPLMERVEYLLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + +G L G C+GC TLK G+ L + PE+K +R Sbjct: 120 NPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGVRD 179 >gi|237728733|ref|ZP_04559214.1| Fe/S biogenesis protein nfuA [Citrobacter sp. 30_2] gi|226909355|gb|EEH95273.1| Fe/S biogenesis protein nfuA [Citrobacter sp. 30_2] Length = 191 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 71/179 (39%), Gaps = 15/179 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ + R+F I PG + G + + ++ +L Sbjct: 4 ISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTAIKFDLLTA 63 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 ++ + P + + + D D +GS + D+ +++R++ +L +++ Sbjct: 64 YVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYMLQSQIN 120 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + +G L G C+GC TLK G+ L PE+K +R Sbjct: 121 PQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLKEGIEKQLLAEFPELKGVRD 179 >gi|283787951|ref|YP_003367816.1| competence protein [Citrobacter rodentium ICC168] gi|282951405|emb|CBG91104.1| putative competence protein [Citrobacter rodentium ICC168] Length = 191 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ +L Sbjct: 3 RISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTALKFDLLT 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ +L +++ Sbjct: 63 AYVDELSA--PFLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYMLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + +G L G C+GC TLK G+ L + PE+K +R Sbjct: 120 NPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGVRD 179 >gi|154343762|ref|XP_001567825.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134065159|emb|CAM40585.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 431 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 7/124 (5%) Query: 68 YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDN 127 DW L+ V ++ +H SG+P + + + D + DS +V IKE++ Sbjct: 222 TDWSELKFHVSALLTDHICSGNPHV-DPNAPNPHADTVAEA----GDSEIVLMIKELVAT 276 Query: 128 RVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKD 185 +RP + DGGD+ F G+ G + + + GAC C ++ L + H++PEVK Sbjct: 277 TIRPQLQEDGGDLRFVGFDPVLGDMRVELLGACRTCKNSKTALVDLIERTTRHWIPEVKA 336 Query: 186 IRTV 189 ++ V Sbjct: 337 VKEV 340 Score = 47.9 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIH--FSNAKEAEISPLASRIFS-IPGIASVYFG 57 +F++ + TPN A KF + + H N + +SPLA + +P + V G Sbjct: 48 VFVRFQPTPNDACYKFYVDHMQFLPPHAHTMLFNRTNSYLSPLAHALLEALPMVEEVTVG 107 Query: 58 YDFITVGKDQYDWEH 72 F+TV + + Sbjct: 108 ASFVTVKRVEVADTE 122 >gi|127511040|ref|YP_001092237.1| putative DNA uptake protein [Shewanella loihica PV-4] gi|150383448|sp|A3Q930|NFUA_SHELP RecName: Full=Fe/S biogenesis protein nfuA gi|126636335|gb|ABO21978.1| HesB/YadR/YfhF-family protein [Shewanella loihica PV-4] Length = 192 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 70/182 (38%), Gaps = 16/182 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F I PG S G + D + + + G Sbjct: 3 TISDAAQAHFVKLLADQPEGTHIRVFVISPGTPSAECGVSYCPP--DAVEADDIELEFNG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 P + + + D D +GS +++D+ + +RI+ V+ + + Sbjct: 61 FHAMVDEKSAPFLEDASI-DFVTDQLGSQLTLKAPNAKMRKVDADAPLKERIEYVIQSEI 119 Query: 130 RPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIR 187 P +A GG+I+ + GI L G C+GC TLK G+ L P E+ +R Sbjct: 120 NPQLASHGGNIMLVDIDEAGIAILQFGGGCNGCSMVDVTLKDGIEKQLLDMFPGELTGVR 179 Query: 188 TV 189 V Sbjct: 180 DV 181 >gi|322830955|ref|YP_004210982.1| IscR-regulated protein YhgI [Rahnella sp. Y9602] gi|321166156|gb|ADW71855.1| IscR-regulated protein YhgI [Rahnella sp. Y9602] Length = 191 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 15/172 (8%) Query: 29 HFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFIS 87 HF+ ++ R+F I PG + G + + L+ L ++ + Sbjct: 11 HFAKLLASQEEGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELKFEKLSAFIDELSA 70 Query: 88 GDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVRPAVARDG 137 P + + + D D +GS + D+ +++R++ L +++ P +A G Sbjct: 71 --PYLQDAVI-DFVTDQLGSQLTLKAPNAKMRKVSDDAPLMERVEYQLQSQINPQLASHG 127 Query: 138 GDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 G + DGI L G C+GC TLK G+ L PE+K +R Sbjct: 128 GRVSLMEITDDGIAILQFGGGCNGCSMIDVTLKDGIEKELLQNFPELKGVRD 179 >gi|56415426|ref|YP_152501.1| DNA uptake protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364356|ref|YP_002143993.1| DNA uptake protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81361710|sp|Q5PLY6|NFUA_SALPA RecName: Full=Fe/S biogenesis protein nfuA gi|254767324|sp|B5BHG9|NFUA_SALPK RecName: Full=Fe/S biogenesis protein nfuA gi|56129683|gb|AAV79189.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095833|emb|CAR61406.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 191 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ +L Sbjct: 3 RISDAAQAHFAKLLANQEEGTQIRVFVINPGAPNAECGVSYCPPDAVEATDTALKFDLLT 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ L +++ Sbjct: 63 AYVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYALQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + +G L G C+GC TLK G+ L + PE+K +R Sbjct: 120 NPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGVRD 179 >gi|283835809|ref|ZP_06355550.1| hypothetical protein CIT292_10204 [Citrobacter youngae ATCC 29220] gi|291067975|gb|EFE06084.1| IscR-regulated protein YhgI [Citrobacter youngae ATCC 29220] Length = 191 Score = 117 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 71/179 (39%), Gaps = 15/179 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ + R+F I PG + G + + ++ +L Sbjct: 4 ISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTAIKFDLLTA 63 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 ++ + P + + + D D +GS + D+ +++R++ +L +++ Sbjct: 64 YVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYMLQSQIN 120 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + +G L G C+GC TLK G+ L PE+K +R Sbjct: 121 PQLAGHGGRVSLMEITDEGFAILQFGGGCNGCSMVDVTLKEGIEKQLLAEFPELKGVRD 179 >gi|226314372|ref|YP_002774268.1| iron-sulfur cluster assembly protein [Brevibacillus brevis NBRC 100599] gi|226097322|dbj|BAH45764.1| putative iron-sulfur cluster assembly protein [Brevibacillus brevis NBRC 100599] Length = 89 Score = 117 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 105 MGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSA 164 + E + ++ +++EVLD ++RP + RDGGD+ DGIV L + GAC CPS+ Sbjct: 5 KERLERSECNMDIMDQVQEVLD-KLRPYLQRDGGDVQLVDVEDGIVKLRLMGACGSCPSS 63 Query: 165 SETLKYGVANILNHFVPEVKDIRTV 189 + TLK G+ L +P +K+++ V Sbjct: 64 TITLKAGIERALVEEIPGIKEVQQV 88 >gi|253690287|ref|YP_003019477.1| IscR-regulated protein YhgI [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259511744|sp|C6DH68|NFUA_PECCP RecName: Full=Fe/S biogenesis protein nfuA gi|251756865|gb|ACT14941.1| IscR-regulated protein YhgI [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 191 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 15/172 (8%) Query: 29 HFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFIS 87 HF + R+F I PG + G + + L+ + ++ + Sbjct: 11 HFLKLLAKQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEASDTVLKFEKISAYVDELSA 70 Query: 88 GDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVRPAVARDG 137 P + + + D D +GS ++ + +++R++ VL +++ P +A G Sbjct: 71 --PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVDDSAPLMERVEYVLQSQINPQLAGHG 127 Query: 138 GDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 G + DG+ L G C+GC TLK G+ L PE+K +R Sbjct: 128 GRVTLMEITDDGMAILQFGGGCNGCSMVDYTLKEGIEKELLEKFPELKGVRD 179 >gi|212637526|ref|YP_002314051.1| putative DNA uptake protein [Shewanella piezotolerans WP3] gi|254767327|sp|B8CUY8|NFUA_SHEPW RecName: Full=Fe/S biogenesis protein nfuA gi|212559010|gb|ACJ31464.1| HesB/YadR/YfhF:Nitrogen-fixing NifU [Shewanella piezotolerans WP3] Length = 192 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 43/182 (23%), Positives = 68/182 (37%), Gaps = 16/182 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF N + R+F I PG A G + D + + G Sbjct: 3 TISETAQAHFVNLLSDQPEGTHIRVFVISPGTAQAECGVSYCPP--DAVEADDTELEFNG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 P + + D D +GS + D+ +V+RI+ V+ + + Sbjct: 61 FNAMVDEKSAPFLEEATI-DFVTDQLGSQLTLKAPNAKMRKVSGDAPLVERIEYVIQSEI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIR 187 P +A GG+I+ DGI L G C+GC TLK G+ L P E+ ++ Sbjct: 120 NPQLASHGGNIMLVEITEDGIAVLQFGGGCNGCSMVDVTLKDGIEKQLLDMFPGELTGVK 179 Query: 188 TV 189 V Sbjct: 180 DV 181 >gi|227112203|ref|ZP_03825859.1| putative DNA uptake protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 191 Score = 117 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 15/172 (8%) Query: 29 HFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFIS 87 HF + R+F I PG + G + + L+ + ++ + Sbjct: 11 HFLKLLAKQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEASDTVLKFEKISAYVDELSA 70 Query: 88 GDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVRPAVARDG 137 P + + + D D +GS ++ ++ +++R++ VL +++ P +A G Sbjct: 71 --PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVDDNAPLMERVEYVLQSQINPQLAGHG 127 Query: 138 GDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 G + DG+ L G C+GC TLK G+ L PE+K +R Sbjct: 128 GRVTLMEITDDGLAILQFGGGCNGCSMVDVTLKEGIEKELLQTFPELKGVRD 179 >gi|152972292|ref|YP_001337438.1| putative DNA uptake protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206576923|ref|YP_002236213.1| IscR-regulated protein YhgI [Klebsiella pneumoniae 342] gi|238896881|ref|YP_002921626.1| putative DNA uptake protein [Klebsiella pneumoniae NTUH-K2044] gi|262045250|ref|ZP_06018276.1| Fe/S-biogenesis protein NfuA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288933201|ref|YP_003437260.1| IscR-regulated protein YhgI [Klebsiella variicola At-22] gi|290512005|ref|ZP_06551373.1| IscR-regulated protein YhgI [Klebsiella sp. 1_1_55] gi|330012478|ref|ZP_08307392.1| IscR-regulated protein YhgI [Klebsiella sp. MS 92-3] gi|166990527|sp|A6TF37|NFUA_KLEP7 RecName: Full=Fe/S biogenesis protein nfuA gi|254767307|sp|B5XTS2|NFUA_KLEP3 RecName: Full=Fe/S biogenesis protein nfuA gi|150957141|gb|ABR79171.1| membrane-bound protein in GNT I transport system [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206565981|gb|ACI07757.1| IscR-regulated protein YhgI [Klebsiella pneumoniae 342] gi|238549208|dbj|BAH65559.1| membrane-bound protein in GNT I transport system [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259037460|gb|EEW38705.1| Fe/S-biogenesis protein NfuA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288887930|gb|ADC56248.1| IscR-regulated protein YhgI [Klebsiella variicola At-22] gi|289775795|gb|EFD83795.1| IscR-regulated protein YhgI [Klebsiella sp. 1_1_55] gi|328533829|gb|EGF60508.1| IscR-regulated protein YhgI [Klebsiella sp. MS 92-3] Length = 191 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ L Sbjct: 3 RISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEDTDTALKFEQLT 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ +L +++ Sbjct: 63 AYVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVSDDAPLMERVEYLLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + DG+ L G C+GC TLK G+ L + PE+K +R Sbjct: 120 NPQLAGHGGRVSLMEITDDGLAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGVRD 179 >gi|227327615|ref|ZP_03831639.1| putative DNA uptake protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 191 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 15/172 (8%) Query: 29 HFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFIS 87 HF + R+F I PG + G + + L+ + ++ + Sbjct: 11 HFLKLLAKQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEASDTVLKFEKISAYVDELSA 70 Query: 88 GDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVRPAVARDG 137 P + + + D D +GS ++ ++ +++R++ VL +++ P +A G Sbjct: 71 --PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVDDNAPLMERVEYVLQSQINPQLAGHG 127 Query: 138 GDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 G + DG+ L G C+GC TLK G+ L P++K +R Sbjct: 128 GRVTLMEITDDGLAILQFGGGCNGCSMVDVTLKEGIEKELLEKFPDLKGVRD 179 >gi|50123054|ref|YP_052221.1| putative DNA uptake protein [Pectobacterium atrosepticum SCRI1043] gi|81643699|sp|Q6CZL7|NFUA_ERWCT RecName: Full=Fe/S biogenesis protein nfuA gi|49613580|emb|CAG77031.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 191 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 15/172 (8%) Query: 29 HFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFIS 87 HF + R+F I PG + G + + ++ + ++ S Sbjct: 11 HFLKLLAKQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEASDTVVKFEKISAYVDELSS 70 Query: 88 GDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVRPAVARDG 137 P + + + D D +GS ++ + +++R++ VL +++ P +A G Sbjct: 71 --PYLEDADI-DFVTDQLGSQLTLKAPNAKMRKVDDSAPLMERVEYVLQSQINPQLAGHG 127 Query: 138 GDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 G + DG+ L G C+GC TLK G+ L PE+K +R Sbjct: 128 GRVTLMEITDDGLAILQFGGGCNGCSMVDFTLKEGIEKELLEKFPELKGVRD 179 >gi|221135019|ref|ZP_03561322.1| putative DNA uptake protein [Glaciecola sp. HTCC2999] Length = 192 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 64/179 (35%), Gaps = 14/179 (7%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF + + R+F + PG ++ G + T D + +R P G Sbjct: 4 ISETAQAHFVKLLKNQEDNTNIRVFVVNPGTSTAECGVSYCTP--DAVEATDIRLPFNGF 61 Query: 81 IMEHFISGDPIIHNGGLGDMKLD---------DMGSGDFIESDSAVVQRIKEVLDNRVRP 131 P + + + I D+ ++ R++ ++ + P Sbjct: 62 DAVVDQESAPFLEEAEIDFVTDQMGSQLTLKAPNAKARKIADDAPLIDRVEYLIQTEINP 121 Query: 132 AVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIRT 188 +A G + G DGI L G C+GC TLK G+ +L F E+ +R Sbjct: 122 QLANHNGQVTLTGITDDGIAILQFGGGCNGCSMVDVTLKDGIEKQMLEQFAGELTGVRD 180 >gi|270264449|ref|ZP_06192715.1| Fe/S biogenesis protein NfuA [Serratia odorifera 4Rx13] gi|270041585|gb|EFA14683.1| Fe/S biogenesis protein NfuA [Serratia odorifera 4Rx13] Length = 191 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ L Sbjct: 3 RITDTAQEHFAKLLANQEEGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELKFEKLS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ P + + + D D +GS ++ ++ +++R++ VL +++ Sbjct: 63 AYIDEIS--KPYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVDDNAPLMERVEYVLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + D + L G C+GC TLK G+ L PE+K +R Sbjct: 120 NPQLAGHGGRVTLMEITDDSLAILQFGGGCNGCSMVDVTLKEGIEKELLQKFPELKGVRD 179 >gi|157372866|ref|YP_001480855.1| putative DNA uptake protein [Serratia proteamaculans 568] gi|166990528|sp|A8GKT7|NFUA_SERP5 RecName: Full=Fe/S biogenesis protein nfuA gi|157324630|gb|ABV43727.1| HesB/YadR/YfhF-family protein [Serratia proteamaculans 568] Length = 191 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ L Sbjct: 3 RITDTAQEHFAKLLANQEEGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELKFEKLS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ P + + + D D +GS ++ ++ +++R++ VL +++ Sbjct: 63 AYIDELS--KPYLDDAEI-DFVTDQLGSQLTLKAPNAKMRKVDDNAPLMERVEYVLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + D + L G C+GC TLK G+ L PE+K +R Sbjct: 120 NPQLAGHGGRVTLMEITDDSLAILQFGGGCNGCSMVDVTLKEGIEKELLQKFPELKGVRD 179 >gi|292489916|ref|YP_003532806.1| protein gntY [Erwinia amylovora CFBP1430] gi|292900951|ref|YP_003540320.1| Fe-S protein [Erwinia amylovora ATCC 49946] gi|291200799|emb|CBJ47933.1| putative Fe-S protein [Erwinia amylovora ATCC 49946] gi|291555353|emb|CBA23723.1| Protein gntY [Erwinia amylovora CFBP1430] gi|312174100|emb|CBX82353.1| Protein gntY [Erwinia amylovora ATCC BAA-2158] Length = 191 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 70/179 (39%), Gaps = 15/179 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ + R+F I PG + G + + L+ L Sbjct: 4 ITDSAQEHFAKLLSKQEDGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELKFDKLSA 63 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 ++ + P + + + D D++GS + D+ +++R++ +L ++ Sbjct: 64 FVDELSA--PYLQDAEI-DFVTDNLGSQLTLKAPNAKMRKVSDDAPLIERVEYLLQAQIN 120 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + DG L G C+GC TLK G+ + PE+K +R Sbjct: 121 PQLASHGGKVSLMEITDDGYAILQFGGGCNGCSMVDVTLKEGIEKEMLAAFPELKGVRD 179 >gi|119776634|ref|YP_929374.1| putative DNA uptake protein [Shewanella amazonensis SB2B] gi|150383447|sp|A1SBE8|NFUA_SHEAM RecName: Full=Fe/S biogenesis protein nfuA gi|119769134|gb|ABM01705.1| YhgI protein [Shewanella amazonensis SB2B] Length = 192 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 66/180 (36%), Gaps = 14/180 (7%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F I PG A G + D + + + G Sbjct: 3 TISEAAQAHFVKLLADQPEGTNIRVFVISPGTAQAECGVSYCPP--DAVEDDDIELEFNG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLD---------DMGSGDFIESDSAVVQRIKEVLDNRVR 130 P + + + + + +D+++V+RI+ V+ + Sbjct: 61 FNAMVDEKSAPFLEDASIDLVTDQLGSQLTLKAPNAKMRKVSADASLVERIEYVIQAEIN 120 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRT 188 P +A GG+I+ DG+ + G C+GC TLK G+ L P E+ ++R Sbjct: 121 PQLASHGGNILLVEVTDDGVAVIQFGGGCNGCSMVDVTLKDGIEKQLLDMFPGELTEVRD 180 >gi|329297358|ref|ZP_08254694.1| Fe/S biogenesis protein NfuA [Plautia stali symbiont] Length = 191 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 69/178 (38%), Gaps = 15/178 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ L Sbjct: 3 RITDTAQEHFAKLLTKQEDGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELKFDKLS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D++GS + D+ +V+R++ +L ++ Sbjct: 63 AYVDELSA--PYLEDAEI-DFVTDNLGSQLTLKAPNAKMRKVSDDAPMVERVEYLLQAQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 P +A GG + +G L G C+GC TLK G+ L PE+K + Sbjct: 120 NPQLASHGGRVSLMEITDEGYAILQFGGGCNGCSMIDVTLKDGIEKELLAAFPELKGV 177 >gi|300718787|ref|YP_003743590.1| Fe/S biogenesis protein [Erwinia billingiae Eb661] gi|299064623|emb|CAX61743.1| Fe/S biogenesis protein [Erwinia billingiae Eb661] Length = 191 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 15/179 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ + R+F I PG + G + + L+ L Sbjct: 4 ITDSAQEHFAKLLSKQEDGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELKFEKLSA 63 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 ++ + P + + D D++GS ++ ++ +++R++ L + Sbjct: 64 YIDELSA--PYLEEAEI-DFVTDNLGSQLTLKAPNAKMRKVDDNAPLIERVEYQLQATIN 120 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + DG L G C+GC TLK G+ L PE+K +R Sbjct: 121 PQLASHGGKVSLMEITDDGYAILQFGGGCNGCSMVDVTLKEGIEKELLVAFPELKGVRD 179 >gi|37524219|ref|NP_927563.1| putative DNA uptake protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|51701988|sp|Q7N9W2|NFUA_PHOLL RecName: Full=Fe/S biogenesis protein nfuA gi|36783642|emb|CAE12493.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 191 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 69/179 (38%), Gaps = 15/179 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ + R+F I PG + G + + L+ L Sbjct: 4 ITEAAQTHFAKLLANQEPGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELKFDQLSA 63 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 ++ + P + + D D +GS + DS + +R++ VL +++ Sbjct: 64 YVDELSA--PFLEEAEI-DFVTDQLGSQLTLKAPNAKMRKVSDDSPLAERVEYVLQSQIN 120 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + DG L G C+GC TLK G+ L + PE+K ++ Sbjct: 121 PQLAGHGGRVSLMEITDDGFAILQFGGGCNGCSMVDVTLKEGIEKELLNMFPELKGVKD 179 >gi|290473229|ref|YP_003466094.1| Fe/S biogenesis protein [Xenorhabdus bovienii SS-2004] gi|289172527|emb|CBJ79294.1| Fe/S biogenesis protein [Xenorhabdus bovienii SS-2004] Length = 191 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 72/179 (40%), Gaps = 15/179 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ ++ R+F I PG + G + + L+ + Sbjct: 4 ITEAAQAHFAKLLASQEPGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELKFDQISA 63 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE----------SDSAVVQRIKEVLDNRVR 130 ++ + P + + D D +GS ++ D+ +++R++ VL +++ Sbjct: 64 YVDEISA--PFLAEAVI-DFVTDQLGSQLTLKAPNAKMRKVTDDAPLIERVEYVLQSQIN 120 Query: 131 PAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + D G L G C+GC TLK G+ L + PE+K +R Sbjct: 121 PQLAGHGGRVSLMEITDAGYAILQFGGGCNGCSMVDVTLKEGIEKELLNMFPELKGVRD 179 >gi|261823348|ref|YP_003261454.1| DNA uptake protein [Pectobacterium wasabiae WPP163] gi|261607361|gb|ACX89847.1| IscR-regulated protein YhgI [Pectobacterium wasabiae WPP163] Length = 191 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 15/172 (8%) Query: 29 HFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFIS 87 HF + R+F I PG + G + + L+ + ++ + Sbjct: 11 HFLKLLAKQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEASDTVLKFEKISAYVDELSA 70 Query: 88 GDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVRPAVARDG 137 P + + + D D +GS ++ + +++R++ VL +++ P +A G Sbjct: 71 --PYLEDADI-DFVTDQLGSQLTLKAPNAKMRKVDDSAPLMERVEYVLQSQINPQLAGHG 127 Query: 138 GDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 G + DG+ L G C+GC TLK G+ L PE+K +R Sbjct: 128 GRVTLMEITDDGLAILQFGGGCNGCSMVDVTLKEGIEKELLQTFPELKGVRD 179 >gi|332141688|ref|YP_004427426.1| Fe/S biogenesis protein NfuA [Alteromonas macleodii str. 'Deep ecotype'] gi|332143387|ref|YP_004429125.1| Fe/S biogenesis protein NfuA [Alteromonas macleodii str. 'Deep ecotype'] gi|254767290|sp|B4S1U9|NFUA_ALTMD RecName: Full=Fe/S biogenesis protein nfuA gi|327551710|gb|AEA98428.1| Fe/S biogenesis protein NfuA [Alteromonas macleodii str. 'Deep ecotype'] gi|327553409|gb|AEB00128.1| Fe/S biogenesis protein NfuA [Alteromonas macleodii str. 'Deep ecotype'] Length = 192 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 64/180 (35%), Gaps = 14/180 (7%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + E HF + S R+F + PG +S G + D + R G Sbjct: 3 TISEEAQAHFVKLLSKQESGTNIRVFVVNPGTSSAECGVSYCPP--DAVEETDTRLTFNG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLD---------DMGSGDFIESDSAVVQRIKEVLDNRVR 130 P + + + + D+ +++RI ++++ + Sbjct: 61 FDAVVDEESAPYLDEAEIDYVTDQMGSQLTLKAPNAKARKVSDDAPLIERINYMIESEIN 120 Query: 131 PAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIRT 188 P +A GG +V DG L G C+GC TLK G+ +L F E+ +R Sbjct: 121 PQLANHGGQVVLTELTDDGYAVLQFGGGCNGCSMVDVTLKDGIEKQMLEQFAGELNGVRD 180 >gi|311277652|ref|YP_003939883.1| IscR-regulated protein YhgI [Enterobacter cloacae SCF1] gi|308746847|gb|ADO46599.1| IscR-regulated protein YhgI [Enterobacter cloacae SCF1] Length = 191 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 70/180 (38%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + + L Sbjct: 3 RISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTAMEFEQLT 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ +L +++ Sbjct: 63 AYVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVSDDAPLMERVEYLLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + +G L G C+GC TLK G+ L + PE+K +R Sbjct: 120 NPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGVRD 179 >gi|188535341|ref|YP_001909138.1| putative DNA uptake protein [Erwinia tasmaniensis Et1/99] gi|259910062|ref|YP_002650418.1| putative DNA uptake protein [Erwinia pyrifoliae Ep1/96] gi|254767305|sp|B2VJW0|NFUA_ERWT9 RecName: Full=Fe/S biogenesis protein nfuA gi|188030383|emb|CAO98274.1| putative membrane-bound protein GntY [Erwinia tasmaniensis Et1/99] gi|224965684|emb|CAX57216.1| putative DNA uptake protein [Erwinia pyrifoliae Ep1/96] gi|283480162|emb|CAY76078.1| Protein gntY [Erwinia pyrifoliae DSM 12163] gi|310765661|gb|ADP10611.1| putative DNA uptake protein [Erwinia sp. Ejp617] Length = 191 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 70/179 (39%), Gaps = 15/179 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ + R+F I PG + G + + L+ L Sbjct: 4 ITDSAQEHFAKLLSKQEDGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELKFDKLSA 63 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 ++ + P + + + D D++GS + D+ +++R++ +L ++ Sbjct: 64 FVDELSA--PYLQDAEI-DFVTDNLGSQLTLKAPNAKMRKVSDDAPLIERVEYLLQAQIN 120 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + +G L G C+GC TLK G+ + PE+K +R Sbjct: 121 PQLASHGGKVSLMEITDEGYAILQFGGGCNGCSMVDVTLKEGIEKEMLAAFPELKGVRD 179 >gi|15615981|ref|NP_244286.1| nitrogen fixation protein (NifU protein) [Bacillus halodurans C-125] gi|10176042|dbj|BAB07138.1| nitrogen fixation protein (NifU protein) [Bacillus halodurans C-125] Length = 79 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 1/79 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 +E+ + + +++KEVLD ++RP + RDGGD+ DGIV + + GAC CPS++ TLK Sbjct: 1 METSTEMHEQVKEVLD-KLRPFLLRDGGDVELVDVEDGIVKVRLLGACGSCPSSTITLKA 59 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ L VP VK+I V Sbjct: 60 GIERALLEEVPGVKEIEQV 78 >gi|85060303|ref|YP_456005.1| putative DNA uptake protein [Sodalis glossinidius str. 'morsitans'] gi|119370620|sp|Q2NQH5|NFUA_SODGM RecName: Full=Fe/S biogenesis protein nfuA gi|84780823|dbj|BAE75600.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 191 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 69/172 (40%), Gaps = 15/172 (8%) Query: 29 HFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFIS 87 HF+ + R+F I PG + G + + L+ + ++ + Sbjct: 11 HFAKLLSNQEPGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTELKFDKISAYVDELSA 70 Query: 88 GDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVRPAVARDG 137 P + + + D D +GS + ++ +++R++ +L +++ P +A G Sbjct: 71 --PYLQDAEI-DFVTDKLGSQLTLKAPNAKMRKVSDEAPLIERVEYLLQSQINPQLAGHG 127 Query: 138 GDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 G + D + L G C+GC TLK G+ L PE+K +R Sbjct: 128 GQVTLMEITDDMLAILQFGGGCNGCSMVDYTLKEGIEKELLEKFPELKGVRD 179 >gi|238765194|ref|ZP_04626125.1| Fe/S bioproteinsis protein nfuA [Yersinia kristensenii ATCC 33638] gi|238696577|gb|EEP89363.1| Fe/S bioproteinsis protein nfuA [Yersinia kristensenii ATCC 33638] Length = 191 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ L Sbjct: 3 TITDTAQSHFAKLLANQEEGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELKFEQLS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ P + + + D D +GS ++ ++ +++R++ VL +++ Sbjct: 63 AYIDELS--KPYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVDDNAPLMERVEYVLQSQI 119 Query: 130 RPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + D + L G C+GC TLK G+ L PE+K +R Sbjct: 120 NPQLAGHGGRVTLMEITPDALAILQFGGGCNGCSMVDVTLKEGIEKELLQKFPELKGVRD 179 >gi|198414946|ref|XP_002131248.1| PREDICTED: similar to NFU1 iron-sulfur cluster scaffold homolog (HIRA-interacting protein 5) [Ciona intestinalis] Length = 201 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 10/185 (5%) Query: 14 LKFIPGQVVL---VEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKD---- 66 + F PG VL E I + + SPL +I I GI SV I V K+ Sbjct: 1 MIFHPGCPVLHNLNEQKIKYHSRHPCYHSPLVRQIMKIDGIESVTLFTKHIHVQKNTDTL 60 Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMK-LDDMGSGDFIESDSAVVQRIKEVL 125 W ++P ++ ++ F S P + + + G + I +++ Sbjct: 61 SPQWSSIKPIIVATLINFFASQLPTTTHHQSKRLHYHKESGECVAYGKLDDIEYVIDDLI 120 Query: 126 DNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEV 183 ++R+RP V +GGD+++K + +G V++ + G+C P A+ + +L + VP V Sbjct: 121 NSRIRPTVQDEGGDVIYKDFNRGNGTVYVLLLGSCLYTPKATNAITSATLLLLQYHVPCV 180 Query: 184 KDIRT 188 + Sbjct: 181 TSVVQ 185 >gi|123444169|ref|YP_001008139.1| putative DNA uptake protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332163339|ref|YP_004299916.1| putative DNA uptake protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|150383451|sp|A1JSF6|NFUA_YERE8 RecName: Full=Fe/S biogenesis protein nfuA gi|122091130|emb|CAL14013.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318607833|emb|CBY29331.1| nfua Fe-S protein maturation [Yersinia enterocolitica subsp. palearctica Y11] gi|325667569|gb|ADZ44213.1| putative DNA uptake protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862994|emb|CBX73127.1| Fe/S biogenesis protein nfuA [Yersinia enterocolitica W22703] Length = 191 Score = 114 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ L Sbjct: 3 TITDAAQSHFAKLLANQEEGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELKFEQLS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ P + + + D D +GS ++ ++ +++R++ VL +++ Sbjct: 63 AYIDELS--KPYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVDDNAPLMERVEYVLQSQI 119 Query: 130 RPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + D + L G C+GC TLK G+ L PE+K +R Sbjct: 120 NPQLAGHGGRVTLMEITPDALAILQFGGGCNGCSMVDVTLKEGIEKELLQKFPELKGVRD 179 >gi|188025400|ref|ZP_02958487.2| hypothetical protein PROSTU_00225 [Providencia stuartii ATCC 25827] gi|188023649|gb|EDU61689.1| hypothetical protein PROSTU_00225 [Providencia stuartii ATCC 25827] Length = 194 Score = 114 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 16/180 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ E + R+F I PG S G + + + L+ L Sbjct: 6 ITEAAQAHFAKLLENQEPGTQIRVFVINPGTPSAECGVSYCPPDAVEATDQELKFERLSA 65 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 ++ + P + + + D D +GS + D+ +++R++ VL +++ Sbjct: 66 YVDEISA--PFLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVSDDAPLIERVEYVLQSQIN 122 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIRT 188 P +A GG + DG L G C+GC TLK G+ +L F E+K ++ Sbjct: 123 PQLASHGGRVSLMEITDDGFAILQFGGGCNGCSMVDVTLKEGIEKELLKMFEGELKGVKD 182 >gi|300725234|ref|YP_003714562.1| Fe/S biogenesis protein [Xenorhabdus nematophila ATCC 19061] gi|297631779|emb|CBJ92498.1| Fe/S biogenesis protein [Xenorhabdus nematophila ATCC 19061] Length = 191 Score = 114 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 68/179 (37%), Gaps = 15/179 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ + R+F I PG + G + + L+ L Sbjct: 4 ITEAAQAHFAKLLANQEPGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELKFDQLSA 63 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 ++ + P + + D D +GS ++ D+ ++ R++ VL +++ Sbjct: 64 YVDEVSA--PFLEEAVI-DFVTDQLGSQLTLKAPNAKMRKVDDDAPLIDRVEYVLQSQIN 120 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + +G L G C+GC TLK G+ L PE+ ++ Sbjct: 121 PQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLKEGIEKQLLQVFPELTGVKD 179 >gi|212711654|ref|ZP_03319782.1| hypothetical protein PROVALCAL_02729 [Providencia alcalifaciens DSM 30120] gi|212685756|gb|EEB45284.1| hypothetical protein PROVALCAL_02729 [Providencia alcalifaciens DSM 30120] Length = 192 Score = 114 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 76/180 (42%), Gaps = 16/180 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ E++ S R+F I PG + G + G + + L+ L Sbjct: 4 ITEAAQTHFAKLLESQESGTQIRVFVINPGTPTAECGVSYCPPGAVEATDKELKFEKLSA 63 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 ++ + P + + + D D +GS + D+ +++R++ VL +++ Sbjct: 64 YVDEISA--PFLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVSDDAPLIERVEYVLQSQIN 120 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIRT 188 P +A GG + +G L G C+GC TLK G+ +L F E+K ++ Sbjct: 121 PQLASHGGRVSLMEITEEGFAILQFGGGCNGCSMVDVTLKEGIEKELLKMFEGELKGVKD 180 >gi|22127773|ref|NP_671196.1| putative DNA uptake protein [Yersinia pestis KIM 10] gi|45439990|ref|NP_991529.1| putative DNA uptake protein [Yersinia pestis biovar Microtus str. 91001] gi|51598063|ref|YP_072254.1| DNA uptake protein [Yersinia pseudotuberculosis IP 32953] gi|108809333|ref|YP_653249.1| putative DNA uptake protein [Yersinia pestis Antiqua] gi|108814098|ref|YP_649865.1| putative DNA uptake protein [Yersinia pestis Nepal516] gi|145597377|ref|YP_001161452.1| putative DNA uptake protein [Yersinia pestis Pestoides F] gi|150260809|ref|ZP_01917537.1| predicted gluconate transport associated protein [Yersinia pestis CA88-4125] gi|153947285|ref|YP_001402938.1| DNA uptake protein [Yersinia pseudotuberculosis IP 31758] gi|162421404|ref|YP_001608065.1| putative DNA uptake protein [Yersinia pestis Angola] gi|165928048|ref|ZP_02223880.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165936266|ref|ZP_02224835.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|166010431|ref|ZP_02231329.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166214579|ref|ZP_02240614.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167399248|ref|ZP_02304772.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419001|ref|ZP_02310754.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426539|ref|ZP_02318292.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468684|ref|ZP_02333388.1| hesB-like domain/nifU-like domain protein [Yersinia pestis FV-1] gi|170022424|ref|YP_001718929.1| putative DNA uptake protein [Yersinia pseudotuberculosis YPIII] gi|186897263|ref|YP_001874375.1| putative DNA uptake protein [Yersinia pseudotuberculosis PB1/+] gi|218927338|ref|YP_002345213.1| putative DNA uptake protein [Yersinia pestis CO92] gi|229836393|ref|ZP_04456560.1| predicted gluconate transport associated protein [Yersinia pestis Pestoides A] gi|229839982|ref|ZP_04460141.1| predicted gluconate transport associated protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842063|ref|ZP_04462218.1| predicted gluconate transport associated protein [Yersinia pestis biovar Orientalis str. India 195] gi|229904636|ref|ZP_04519747.1| predicted gluconate transport associated protein [Yersinia pestis Nepal516] gi|270488149|ref|ZP_06205223.1| IscR-regulated protein YhgI [Yersinia pestis KIM D27] gi|294502220|ref|YP_003566282.1| hypothetical protein YPZ3_0110 [Yersinia pestis Z176003] gi|51702126|sp|Q8ZJI0|NFUA_YERPE RecName: Full=Fe/S biogenesis protein nfuA gi|81638196|sp|Q664J6|NFUA_YERPS RecName: Full=Fe/S biogenesis protein nfuA gi|119370621|sp|Q1C2L8|NFUA_YERPA RecName: Full=Fe/S biogenesis protein nfuA gi|119370622|sp|Q1CCL5|NFUA_YERPN RecName: Full=Fe/S biogenesis protein nfuA gi|166990533|sp|A7FNW0|NFUA_YERP3 RecName: Full=Fe/S biogenesis protein nfuA gi|166990534|sp|A4TGR7|NFUA_YERPP RecName: Full=Fe/S biogenesis protein nfuA gi|254767339|sp|B2K5V9|NFUA_YERPB RecName: Full=Fe/S biogenesis protein nfuA gi|254767340|sp|A9R4D2|NFUA_YERPG RecName: Full=Fe/S biogenesis protein nfuA gi|254767341|sp|B1JHZ3|NFUA_YERPY RecName: Full=Fe/S biogenesis protein nfuA gi|21960901|gb|AAM87447.1|AE013995_2 hypothetical protein y3903 [Yersinia pestis KIM 10] gi|45434845|gb|AAS60406.1| Thioredoxin-like proteins and domains [Yersinia pestis biovar Microtus str. 91001] gi|51591345|emb|CAH23011.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|108777746|gb|ABG20265.1| hypothetical protein YPN_3938 [Yersinia pestis Nepal516] gi|108781246|gb|ABG15304.1| hypothetical protein YPA_3342 [Yersinia pestis Antiqua] gi|115345949|emb|CAL18813.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145209073|gb|ABP38480.1| hypothetical protein YPDSF_0054 [Yersinia pestis Pestoides F] gi|149290217|gb|EDM40294.1| predicted gluconate transport associated protein [Yersinia pestis CA88-4125] gi|152958780|gb|ABS46241.1| hesB-like domain/nifU-like domain protein [Yersinia pseudotuberculosis IP 31758] gi|162354219|gb|ABX88167.1| hesB-like domain/nifU-like domain protein [Yersinia pestis Angola] gi|165915880|gb|EDR34488.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|165919997|gb|EDR37298.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165990521|gb|EDR42822.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166204234|gb|EDR48714.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166962995|gb|EDR59016.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051752|gb|EDR63160.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054527|gb|EDR64335.1| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169748958|gb|ACA66476.1| IscR-regulated protein YhgI [Yersinia pseudotuberculosis YPIII] gi|186700289|gb|ACC90918.1| IscR-regulated protein YhgI [Yersinia pseudotuberculosis PB1/+] gi|229678754|gb|EEO74859.1| predicted gluconate transport associated protein [Yersinia pestis Nepal516] gi|229690373|gb|EEO82427.1| predicted gluconate transport associated protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696348|gb|EEO86395.1| predicted gluconate transport associated protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706461|gb|EEO92468.1| predicted gluconate transport associated protein [Yersinia pestis Pestoides A] gi|262360299|gb|ACY57020.1| hypothetical protein YPD4_0111 [Yersinia pestis D106004] gi|262364249|gb|ACY60806.1| hypothetical protein YPD8_0116 [Yersinia pestis D182038] gi|270336653|gb|EFA47430.1| IscR-regulated protein YhgI [Yersinia pestis KIM D27] gi|294352679|gb|ADE63020.1| hypothetical protein YPZ3_0110 [Yersinia pestis Z176003] gi|320013262|gb|ADV96833.1| putative DNA uptake protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 191 Score = 114 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 9/177 (5%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ L Sbjct: 3 TITDAAQSHFAKLLANQEEGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELKFEQLS 62 Query: 80 MIME-----HFISGDPIIHNGGLGDMKLDDMGSGDFIESDS--AVVQRIKEVLDNRVRPA 132 ++ + + LG + + D +++R++ VL +++ P Sbjct: 63 AYVDELSVPYLQDAEIDFVTDQLGSQLTLKAPNAKMRKVDDSAPLMERVEYVLQSQINPQ 122 Query: 133 VARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 +A GG + +G+ L G C+GC TLK G+ L PE+K +R Sbjct: 123 LAGHGGRVTLMEITPEGLAILQFGGGCNGCSMVDVTLKEGIEKELLQKFPELKGVRD 179 >gi|269140629|ref|YP_003297330.1| hypothetical protein ETAE_3288 [Edwardsiella tarda EIB202] gi|294638123|ref|ZP_06716379.1| IscR-regulated protein YhgI [Edwardsiella tarda ATCC 23685] gi|267986290|gb|ACY86119.1| hypothetical protein ETAE_3288 [Edwardsiella tarda EIB202] gi|291088690|gb|EFE21251.1| IscR-regulated protein YhgI [Edwardsiella tarda ATCC 23685] gi|304560415|gb|ADM43079.1| NfuA [Edwardsiella tarda FL6-60] Length = 191 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + + L L Sbjct: 3 RITEAAQEHFAKLLANQEPGTQIRVFVINPGTPNAECGVSYCPPDAVEANDRKLDFEQLS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ +L +++ Sbjct: 63 AYVDEISA--PFLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLIERVEYILQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + +G L G C+GC TLK G+ L PE+K +R Sbjct: 120 NPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDYTLKEGIEKELLQRFPELKGVRD 179 >gi|197286755|ref|YP_002152627.1| DNA uptake protein [Proteus mirabilis HI4320] gi|227355054|ref|ZP_03839465.1| HesB family protein [Proteus mirabilis ATCC 29906] gi|254767308|sp|B4EZM8|NFUA_PROMH RecName: Full=Fe/S biogenesis protein nfuA gi|194684242|emb|CAR45763.1| putative gluconate metabolism protein (putative iron-sulphur cluster biosynthesis) [Proteus mirabilis HI4320] gi|227164841|gb|EEI49688.1| HesB family protein [Proteus mirabilis ATCC 29906] Length = 192 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 72/181 (39%), Gaps = 16/181 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + + ++ L Sbjct: 3 TITDAAQAHFAKLLANQEPNTQIRVFVINPGTPNAECGVSYCPPDAVEPNDTEIKFEKLS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ VL +++ Sbjct: 63 AYVDDISA--PFLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLIERVEYVLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIR 187 P +A GG + DG L G C+GC TLK G+ L + P E+K ++ Sbjct: 120 NPQLASHGGRVSLMEITEDGYAILQFGGGCNGCSMIDVTLKDGIEKELLNLFPEELKGVK 179 Query: 188 T 188 Sbjct: 180 D 180 >gi|238788981|ref|ZP_04632771.1| Fe/S bioproteinsis protein nfuA [Yersinia frederiksenii ATCC 33641] gi|238723008|gb|EEQ14658.1| Fe/S bioproteinsis protein nfuA [Yersinia frederiksenii ATCC 33641] Length = 191 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ L Sbjct: 3 TITDAAQSHFAKLLANQEEGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELKFEQLS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ P + + + D D +GS ++ ++ +++R++ VL +++ Sbjct: 63 AYVDELS--VPYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVDDNAPLMERVEYVLQSQI 119 Query: 130 RPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + D + L G C+GC TLK G+ L PE+K +R Sbjct: 120 NPQLASHGGRVTLMEITPDALAILQFGGGCNGCSMVDVTLKEGIEKELLQKFPELKGVRD 179 >gi|157373320|ref|YP_001471920.1| putative DNA uptake protein [Shewanella sediminis HAW-EB3] gi|189041731|sp|A8FPL9|NFUA_SHESH RecName: Full=Fe/S biogenesis protein nfuA gi|157315694|gb|ABV34792.1| HesB/YadR/YfhF-family protein [Shewanella sediminis HAW-EB3] Length = 192 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 67/182 (36%), Gaps = 16/182 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F I PG A+ G + D + + + G Sbjct: 3 TISDAAQAHFVTLLADQPEGTHIRVFVISPGTATAECGVSYCPP--DAVEADDMEFEFNG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 P + + D D +GS + SD+ + +RI V+ + + Sbjct: 61 FNAMVDEKSAPFLEEASI-DFVTDQLGSQLTLKAPNAKMRKVASDAPLSERIDYVIQSEI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIR 187 P +A GG+I+ +G L G C+GC TLK G+ L P E+ ++ Sbjct: 120 NPQLASHGGNIMLVEVTEEGTAILQFGGGCNGCSMVDVTLKDGIETQLLEKFPGELTGVK 179 Query: 188 TV 189 V Sbjct: 180 DV 181 >gi|238754092|ref|ZP_04615450.1| Fe/S bioproteinsis protein nfuA [Yersinia ruckeri ATCC 29473] gi|238707588|gb|EEP99947.1| Fe/S bioproteinsis protein nfuA [Yersinia ruckeri ATCC 29473] Length = 191 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 64/177 (36%), Gaps = 9/177 (5%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ L Sbjct: 3 KITDAAQSHFAKLLANQEEGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELKFEQLS 62 Query: 80 MIME-----HFISGDPIIHNGGLGDMKLDDMGSGDFIESDS--AVVQRIKEVLDNRVRPA 132 ++ + + LG + + D +++R++ VL +++ P Sbjct: 63 AYVDELSVPYLQDAEIDFVTDQLGSQLTLKAPNAKMRKVDDSAPLMERVEYVLQSQINPQ 122 Query: 133 VARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 +A GG + D + L G C+GC TLK G+ L PE+K +R Sbjct: 123 LAGHGGRVTLMEITDDALAILQFGGGCNGCSMVDVTLKEGIEKELLQKFPELKGVRD 179 >gi|218438992|ref|YP_002377321.1| nitrogen-fixing NifU domain protein [Cyanothece sp. PCC 7424] gi|218171720|gb|ACK70453.1| nitrogen-fixing NifU domain protein [Cyanothece sp. PCC 7424] Length = 81 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + +++VLD +RP + DGG++ IV L ++GAC CPS++ TLK G Sbjct: 4 ETLPLTTENVEQVLDE-LRPYLMADGGNVELVEIDGPIVKLRLQGACGSCPSSTMTLKMG 62 Query: 172 VANILNHFVPEVKDIRT 188 + L ++PE+ ++ Sbjct: 63 IERRLREYIPEIAEVEQ 79 >gi|238921502|ref|YP_002935017.1| DNA uptake protein [Edwardsiella ictaluri 93-146] gi|259511742|sp|C5BGT5|NFUA_EDWI9 RecName: Full=Fe/S biogenesis protein nfuA gi|238871071|gb|ACR70782.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 191 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + + L L Sbjct: 3 RITEAAQEHFAKLLANQEPGTQIRVFVINPGTPNAECGVSYCPPDAVEANDRKLDFEQLS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ +L +++ Sbjct: 63 AYVDEISA--PFLDDAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLIERVEYILQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + +G L G C+GC TLK G+ L PE+K +R Sbjct: 120 NPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDYTLKEGIEKELLQRFPELKGVRD 179 >gi|167622188|ref|YP_001672482.1| putative DNA uptake protein [Shewanella halifaxensis HAW-EB4] gi|189041729|sp|B0TNS0|NFUA_SHEHH RecName: Full=Fe/S biogenesis protein nfuA gi|167352210|gb|ABZ74823.1| HesB/YadR/YfhF-family protein [Shewanella halifaxensis HAW-EB4] Length = 192 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 67/182 (36%), Gaps = 16/182 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F I PG A G + D + + G Sbjct: 3 TISETAQAHFVKLLSDQPEGTHIRVFVISPGTAQAECGVSYCPP--DAVEADDTEFEFNG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 P + + D D +GS + D+++ +RI+ V+ + + Sbjct: 61 FNAMVDEKSAPFLEEATI-DFVTDQLGSQLTLKAPNAKMRKVSDDASLSERIEYVIQSEI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIR 187 P +A GG+I+ +GI L G C+GC TLK G+ L P E+ ++ Sbjct: 120 NPQLASHGGNIMLVEITEEGIAVLQFGGGCNGCSMVDVTLKDGIEKQLLEMFPSELTGVK 179 Query: 188 TV 189 V Sbjct: 180 DV 181 >gi|307153189|ref|YP_003888573.1| nitrogen-fixing NifU domain-containing protein [Cyanothece sp. PCC 7822] gi|306983417|gb|ADN15298.1| nitrogen-fixing NifU domain protein [Cyanothece sp. PCC 7822] Length = 78 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + + ++ VLD +RP + DGG++ IV L ++GAC CPS++ TLK G+ Sbjct: 2 TLALTSDNVETVLDE-MRPYLMADGGNVELVEIDGPIVKLRLQGACGSCPSSTMTLKMGI 60 Query: 173 ANILNHFVPEVKDIRTV 189 L ++PE+ ++ V Sbjct: 61 ERRLREYIPEIVEVEQV 77 >gi|226327547|ref|ZP_03803065.1| hypothetical protein PROPEN_01418 [Proteus penneri ATCC 35198] gi|225204073|gb|EEG86427.1| hypothetical protein PROPEN_01418 [Proteus penneri ATCC 35198] Length = 192 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 74/180 (41%), Gaps = 16/180 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ + R+F I PG + G + + + ++ L Sbjct: 4 ITDAAQAHFAKLLANQEPNTQIRVFVINPGTPNAECGVSYCPPDAVEPNDTEIKFEKLSA 63 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 ++ + P + + + D D +GS +++D+ +++R++ VL +++ Sbjct: 64 YVDDISA--PFLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVDADAPLIERVEYVLQSQIN 120 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRT 188 P +A GG + DG L G C+GC TLK G+ L + P E+K ++ Sbjct: 121 PQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMIDVTLKDGIEKELLNQFPNELKGVKD 180 >gi|323308188|gb|EGA61437.1| Nfu1p [Saccharomyces cerevisiae FostersO] Length = 109 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 36/87 (41%), Positives = 58/87 (66%), Gaps = 2/87 (2%) Query: 105 MGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCP 162 M + E D V + I+E++D R+RPA+ DGGDI ++G+ G V+L ++GAC+ C Sbjct: 1 MPKFELTEEDEEVSELIEELIDTRIRPAILEDGGDIDYRGWDPKTGTVYLRLQGACTSCS 60 Query: 163 SASETLKYGVANILNHFVPEVKDIRTV 189 S+ TLKYG+ ++L H+V EVK++ + Sbjct: 61 SSEVTLKYGIESMLKHYVDEVKEVIQI 87 >gi|56964703|ref|YP_176434.1| nitrogen fixation protein [Bacillus clausii KSM-K16] gi|56910946|dbj|BAD65473.1| nitrogen fixation protein [Bacillus clausii KSM-K16] Length = 79 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 30/79 (37%), Positives = 51/79 (64%), Gaps = 1/79 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 +E+ + ++++++EVLD ++RP + RDGGD+ DG+V + + GAC CPS++ TLK Sbjct: 1 METSTELMEQVQEVLD-KLRPFLLRDGGDVELIDVEDGVVKVRLLGACGSCPSSTITLKA 59 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ L VP + +I V Sbjct: 60 GIERALLEEVPGITEIEQV 78 >gi|113476915|ref|YP_722976.1| nitrogen-fixing NifU-like protein [Trichodesmium erythraeum IMS101] gi|110167963|gb|ABG52503.1| nitrogen-fixing NifU-like [Trichodesmium erythraeum IMS101] Length = 80 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 E+ + + ++ VLD +RP +A DGG++ IV L ++GACS CPS++ TLK Sbjct: 1 MGEAKALTNENVEIVLDE-LRPYLAADGGNVELVDIEGPIVKLRLQGACSSCPSSTMTLK 59 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ L +PE+ ++ +V Sbjct: 60 MGIERKLREEIPEIAEVESV 79 >gi|317967928|ref|ZP_07969318.1| NifU-like protein [Synechococcus sp. CB0205] Length = 92 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 99 DMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGAC 158 + + + + + ++ ++ LD +RP + DGG++ IV + ++GAC Sbjct: 2 STETPAAAATENADPRALTIENVERTLDE-LRPYLMADGGNVEVVEIDGPIVKVRLQGAC 60 Query: 159 SGCPSASETLKYGVANILNHFVPEVKDIRTV 189 CPS++ TLK G+ L +PEV ++ V Sbjct: 61 GSCPSSTMTLKMGIERKLREAIPEVSEVVQV 91 >gi|238758685|ref|ZP_04619859.1| Fe/S bioproteinsis protein nfuA [Yersinia aldovae ATCC 35236] gi|238702982|gb|EEP95525.1| Fe/S bioproteinsis protein nfuA [Yersinia aldovae ATCC 35236] Length = 191 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ L Sbjct: 3 TITDAAQSHFAKLLANQEEGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTVLKFEQLS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ P + + + D D +GS ++ ++ +++R++ VL +++ Sbjct: 63 AYVDELS--KPYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVDDNAPLMERVEYVLQSQI 119 Query: 130 RPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + D + L G C+GC TLK G+ L PE+K +R Sbjct: 120 NPQLAGHGGRVTLMEITPDALAILQFGGGCNGCSMVDVTLKEGIEKELLQKFPELKGVRD 179 >gi|288553995|ref|YP_003425930.1| hypothetical protein BpOF4_04870 [Bacillus pseudofirmus OF4] gi|288545155|gb|ADC49038.1| hypothetical protein BpOF4_04870 [Bacillus pseudofirmus OF4] Length = 79 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 1/79 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 + + + +V++++EVLD ++RP + RDGGD+ DGIV + + GAC CPS++ TLK Sbjct: 1 MATSTEMVEQVQEVLD-KLRPFLLRDGGDVELVEVEDGIVKVRLLGACGSCPSSTITLKA 59 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ L VP VK+I V Sbjct: 60 GIERALLEEVPGVKEIEQV 78 >gi|238751155|ref|ZP_04612650.1| Fe/S bioproteinsis protein nfuA [Yersinia rohdei ATCC 43380] gi|238710633|gb|EEQ02856.1| Fe/S bioproteinsis protein nfuA [Yersinia rohdei ATCC 43380] Length = 191 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ L Sbjct: 3 TITDAAQSHFAKLLANQEEGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELKFEQLS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ P + + + D D +GS ++ + +++R++ VL +++ Sbjct: 63 AYIDELS--KPYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVDDTAPLMERVEYVLQSQI 119 Query: 130 RPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + D + L G C+GC TLK G+ L PE+K +R Sbjct: 120 NPQLAGHGGRVTLMEITPDALAILQFGGGCNGCSMVDVTLKEGIEKELLQKFPELKGVRD 179 >gi|261344535|ref|ZP_05972179.1| IscR-regulated protein YhgI [Providencia rustigianii DSM 4541] gi|282567449|gb|EFB72984.1| IscR-regulated protein YhgI [Providencia rustigianii DSM 4541] Length = 192 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 16/180 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HFS E + R+F I PG + G + G + + L+ L Sbjct: 4 ITEAAQAHFSKLLEGQEPGTQIRVFVINPGTPTAECGVSYCPPGAVEATDKELKFEKLSA 63 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 ++ + P + + + D D +GS + D+ +++R++ VL +++ Sbjct: 64 YVDEISA--PFLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVSDDAPLIERVEYVLQSQIN 120 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIRT 188 P +A GG + DG L G C+GC TLK G+ +L F E+K ++ Sbjct: 121 PQLAGHGGRVSLMEITEDGFAILQFGGGCNGCSMVDVTLKEGIEKELLKMFDGELKGVKD 180 >gi|295401381|ref|ZP_06811352.1| nitrogen-fixing NifU domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|312109659|ref|YP_003987975.1| nitrogen-fixing NifU domain protein [Geobacillus sp. Y4.1MC1] gi|294976596|gb|EFG52203.1| nitrogen-fixing NifU domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|311214760|gb|ADP73364.1| nitrogen-fixing NifU domain protein [Geobacillus sp. Y4.1MC1] Length = 78 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD + ++++EVLD ++RP + RDGGD DG+V L + GAC CPS++ TLK G+ Sbjct: 2 SDQEIKEQVQEVLD-KLRPFLLRDGGDCELIDVEDGVVKLRLLGACGSCPSSTITLKAGI 60 Query: 173 ANILNHFVPEVKDIRTV 189 L VP + ++ V Sbjct: 61 ERALLEEVPGIVEVEQV 77 >gi|157963821|ref|YP_001503855.1| putative DNA uptake protein [Shewanella pealeana ATCC 700345] gi|189041730|sp|A8H9T3|NFUA_SHEPA RecName: Full=Fe/S biogenesis protein nfuA gi|157848821|gb|ABV89320.1| HesB/YadR/YfhF-family protein [Shewanella pealeana ATCC 700345] Length = 192 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 67/182 (36%), Gaps = 16/182 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F I PG A G + + D + G Sbjct: 3 TISEAAQAHFVKLLSDQPEGTHIRVFVISPGTAQAECGVSYCPPDAVEADDTEI--EFNG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 P + + D D +GS + D+++ +RI+ V+ + + Sbjct: 61 FNAMVDEKSAPFLEEATI-DFVTDQLGSQLTLKAPNAKMRKVSDDASLSERIEYVIQSEI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIR 187 P +A GG+I+ DGI L G C+GC TLK G+ L P E+ ++ Sbjct: 120 NPQLASHGGNIMLVEITEDGIAVLQFGGGCNGCSMVDVTLKDGIEKQLLDMFPGELSGVK 179 Query: 188 TV 189 V Sbjct: 180 DV 181 >gi|304413450|ref|ZP_07394923.1| Fe/S biogenesis protein [Candidatus Regiella insecticola LSR1] gi|304284293|gb|EFL92686.1| Fe/S biogenesis protein [Candidatus Regiella insecticola LSR1] Length = 191 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + + HFS + + R+F I PG + G + + L+ Sbjct: 3 KITEQAQNHFSKLLANQETGTQIRVFVINPGTPTAECGVSYCPPDAIEASDTELKFDPFS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 + ++ + P + + + D D +GS + D+ +++R++ VL +++ Sbjct: 63 VFVDQLSA--PFLVDAEI-DFITDQLGSQLTLKAPNAKMRKVADDAPLMERVEYVLQSKI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + D L G C+GC TLK G+ L PE+K ++ Sbjct: 120 NPQLASHGGRVTLMEITDDAFAVLQFGGGCNGCSMVDVTLKNGIEKELLQTFPELKGVKD 179 >gi|332968729|gb|EGK07781.1| NifU domain protein [Desmospora sp. 8437] Length = 73 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++++EVLD ++RP + RDGGD+ DG+V + + GAC CPS++ TLK G+ L Sbjct: 1 MKEQVQEVLD-KLRPFIQRDGGDVELVNVEDGVVKVRLLGACGSCPSSTITLKAGIERAL 59 Query: 177 NHFVPEVKDIRTV 189 +P V ++ V Sbjct: 60 MEEIPGVTEVEQV 72 >gi|170724529|ref|YP_001758555.1| putative DNA uptake protein [Shewanella woodyi ATCC 51908] gi|254767328|sp|B1KM47|NFUA_SHEWM RecName: Full=Fe/S biogenesis protein nfuA gi|169809876|gb|ACA84460.1| IscR-regulated protein YhgI [Shewanella woodyi ATCC 51908] Length = 192 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 71/181 (39%), Gaps = 16/181 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF N + R+F I PG A+ G + D + + + G Sbjct: 3 TISDAAQAHFVNLLADQPEGTHIRVFVISPGTATAECGVSYCPP--DAVEADDMELEYNG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 P + + + D D +GS + SD+++ +RI+ V+ + + Sbjct: 61 FNAMVDEKSAPFLEDATI-DFVTDQLGSQLTLKAPNAKMRKVASDASLNERIEYVIQSEI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIR 187 P +A GG+I+ DG+ L G C+GC TLK G+ L P E+ ++ Sbjct: 120 NPQLASHGGNIMLLEVTEDGVAILQFGGGCNGCSMVDVTLKDGIEKQLLEMFPGELTGVK 179 Query: 188 T 188 Sbjct: 180 D 180 >gi|320539835|ref|ZP_08039494.1| putative iron-sulfur cluster scaffold protein [Serratia symbiotica str. Tucson] gi|320030021|gb|EFW12041.1| putative iron-sulfur cluster scaffold protein [Serratia symbiotica str. Tucson] Length = 191 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 15/172 (8%) Query: 29 HFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFIS 87 HF+ + R+F I PG + G + + L+ L ++ + Sbjct: 11 HFAKLLANQEIGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELQFEKLSAFVDELSA 70 Query: 88 GDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVRPAVARDG 137 P + + + D D +GS ++ ++ +++R++ +L +++ P +A G Sbjct: 71 --PYLDDAEI-DFVTDQLGSQLTLKAPNAKMRKVDDNAPLIERVEYLLQSQINPQLAGHG 127 Query: 138 GDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 G + D + L G C+GC TLK G+ L PE+K +R Sbjct: 128 GRVTLMEITDDNLAILQFGGGCNGCSMVDVTLKEGIEKELLLKFPELKGVRD 179 >gi|332995765|gb|AEF05820.1| Fe/S biogenesis protein NfuA [Alteromonas sp. SN2] Length = 192 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 65/180 (36%), Gaps = 14/180 (7%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + E HF + + + R+F + PG +S G + D + R G Sbjct: 3 TISEEAQAHFVKLLDKQETGTNIRVFVVNPGTSSAECGVSYCPP--DAVEETDTRLEFNG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLD---------DMGSGDFIESDSAVVQRIKEVLDNRVR 130 P +H + + + D+ + +RI+ +++ + Sbjct: 61 FNAVVDEESVPFLHEAEIDYVTDQMGSQLTLKAPNAKARKVADDAPLAERIRYMIEAEIN 120 Query: 131 PAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIRT 188 P +A GG ++ DG L G C+GC TLK G+ +L F E+ +R Sbjct: 121 PQLASHGGQVMLAELTEDGFAILQFGGGCNGCSMVDVTLKDGIEKQMLEQFAGELNGVRD 180 >gi|238786223|ref|ZP_04630170.1| Fe/S bioproteinsis protein nfuA [Yersinia bercovieri ATCC 43970] gi|238797310|ref|ZP_04640811.1| Fe/S bioproteinsis protein nfuA [Yersinia mollaretii ATCC 43969] gi|238712864|gb|EEQ04929.1| Fe/S bioproteinsis protein nfuA [Yersinia bercovieri ATCC 43970] gi|238718947|gb|EEQ10762.1| Fe/S bioproteinsis protein nfuA [Yersinia mollaretii ATCC 43969] Length = 191 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ + Sbjct: 3 TITDAAQSHFAKLLANQEEGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTELKFEQIS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ P + + + D D +GS ++ + +++R++ VL +++ Sbjct: 63 AYVDELS--KPYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVDDTAPLMERVEYVLQSQI 119 Query: 130 RPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + D + L G C+GC TLK G+ L PE+K +R Sbjct: 120 NPQLAGHGGRVTLMEITPDALAILQFGGGCNGCSMVDVTLKEGIEKELLQKFPELKGVRD 179 >gi|311031755|ref|ZP_07709845.1| NifU-like protein [Bacillus sp. m3-13] Length = 78 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 S+ + +++EVLD ++RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 2 SNPEINAQVQEVLD-KLRPFLLRDGGDCELVDVEDGIVKLRLLGACGSCPSSTITLKAGI 60 Query: 173 ANILNHFVPEVKDIRTV 189 L VP + ++ V Sbjct: 61 ERALLEEVPGIIEVEQV 77 >gi|297792273|ref|XP_002864021.1| hypothetical protein ARALYDRAFT_331396 [Arabidopsis lyrata subsp. lyrata] gi|297309856|gb|EFH40280.1| hypothetical protein ARALYDRAFT_331396 [Arabidopsis lyrata subsp. lyrata] Length = 707 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ VLD +RP + DGG++ IV + ++GAC CPS++ T+K G+ L Sbjct: 85 TEENVESVLDE-IRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRL 143 Query: 177 NHFVPEVKDIRTV 189 +PE+ + V Sbjct: 144 MEKIPEIVAVEAV 156 Score = 37.5 bits (86), Expect = 0.86, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 8/65 (12%) Query: 119 QRIKEVLDNRVRPAVA--RDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + I++VL+ +RP + D G + D IV + + G +G T++ V L Sbjct: 168 ENIEKVLEE-IRPYLIGTAD-GSLDLVEIEDPIVKIRITGPAAG----VMTVRVAVTQKL 221 Query: 177 NHFVP 181 +P Sbjct: 222 REKIP 226 >gi|223993177|ref|XP_002286272.1| nifU like protein [Thalassiosira pseudonana CCMP1335] gi|220977587|gb|EED95913.1| nifU like protein [Thalassiosira pseudonana CCMP1335] Length = 237 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 7/151 (4%) Query: 43 SRIFSIPGIASVY-FGY----DFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGL 97 + + S +A+ FG+ + I++ ++ RP + I+ F + + G Sbjct: 7 AALHSFNMLAAAMAFGHHGARNHISLSTRRHSPFSTRPQLRMTIVSPFDNTEDS-DESGE 65 Query: 98 GDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGA 157 G G E + + VL+ +RP + +DGG++ IV L ++GA Sbjct: 66 GVATATYTSLGSDDEPLDLTWENVDMVLEE-MRPFLLQDGGNVAISEIDGPIVKLELQGA 124 Query: 158 CSGCPSASETLKYGVANILNHFVPEVKDIRT 188 C CPS+++T+K G+ L +PE++++ Sbjct: 125 CGTCPSSTQTMKMGLERKLRERIPEIQEVIQ 155 >gi|87303149|ref|ZP_01085947.1| NifU-like protein [Synechococcus sp. WH 5701] gi|87282316|gb|EAQ74276.1| NifU-like protein [Synechococcus sp. WH 5701] Length = 97 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 1/94 (1%) Query: 96 GLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMR 155 + + V+ ++ VLD +RP + DGG++ V + ++ Sbjct: 4 ETATPDTSASVEAPISDPRALTVENVERVLDE-LRPYLMADGGNVEIVEIDGPTVKVRLQ 62 Query: 156 GACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 GAC CPS++ TLK G+ L +PEV ++ V Sbjct: 63 GACGSCPSSTMTLKMGIERKLREAIPEVNEVVQV 96 >gi|291326981|ref|ZP_06126542.2| IscR-regulated protein YhgI [Providencia rettgeri DSM 1131] gi|291312105|gb|EFE52558.1| IscR-regulated protein YhgI [Providencia rettgeri DSM 1131] Length = 194 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 74/180 (41%), Gaps = 16/180 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ E + R+F I PG + G + G + + L+ L Sbjct: 6 ITEAAQAHFAKLLENQEPGTQIRVFVINPGTPTAECGVSYCPPGAVEATDKELKFEKLSA 65 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 ++ + P + + + D D +GS + D+ +++R++ VL +++ Sbjct: 66 YVDEISA--PFLDDAEI-DFVTDQLGSQLTLKAPNAKMRKVSDDAPLIERVEYVLQSQIN 122 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIRT 188 P +A GG + +G L G C+GC TLK G+ +L F E+K ++ Sbjct: 123 PQLASHGGRVSLMEITDEGFAILQFGGGCNGCSMVDVTLKEGIEKELLKMFEGELKGVKD 182 >gi|238792866|ref|ZP_04636496.1| Fe/S bioproteinsis protein nfuA [Yersinia intermedia ATCC 29909] gi|238727720|gb|EEQ19244.1| Fe/S bioproteinsis protein nfuA [Yersinia intermedia ATCC 29909] Length = 191 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ L Sbjct: 3 TITDAAQSHFAKLLANQEEGTQIRVFVINPGTPTAECGVSYCPPDAVEATDTVLKFEQLS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ P + + + D D +GS ++ + +++R++ VL +++ Sbjct: 63 AYVDEMS--KPYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVDDTAPLMERVEYVLQSQI 119 Query: 130 RPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + D + L G C+GC TLK G+ L PE+K +R Sbjct: 120 NPQLAGHGGRVTLMEITPDALAILQFGGGCNGCSMVDVTLKEGIEKELLQKFPELKGVRD 179 >gi|65316943|ref|ZP_00389902.1| COG0694: Thioredoxin-like proteins and domains [Bacillus anthracis str. A2012] Length = 95 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + + +++ EVLD ++RP + RDGGD+ +GIV L + GAC CPS++ TLK G+ Sbjct: 2 ENPHMQEQVLEVLD-KLRPFLLRDGGDVELVDIEEGIVKLRLMGACGSCPSSTITLKAGI 60 Query: 173 ANILNHFVPEVKDIRTV 189 L VP V ++ V Sbjct: 61 ERALLEEVPGVIEVEQV 77 >gi|254415273|ref|ZP_05029035.1| hypothetical protein MC7420_2699 [Microcoleus chthonoplastes PCC 7420] gi|196178079|gb|EDX73081.1| hypothetical protein MC7420_2699 [Microcoleus chthonoplastes PCC 7420] Length = 84 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + + ++ VLD +RP + DGG++ IV L ++GAC CPS++ TLK G+ Sbjct: 10 ALTSENVEAVLDE-LRPYLMADGGNVDLVEIDGPIVKLRLQGACGSCPSSAMTLKMGIER 68 Query: 175 ILNHFVPEVKDIRTV 189 L F+PE+ ++ V Sbjct: 69 RLREFIPEIVEVEQV 83 >gi|149183085|ref|ZP_01861537.1| YutI [Bacillus sp. SG-1] gi|148849214|gb|EDL63412.1| YutI [Bacillus sp. SG-1] Length = 78 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + +V +++EVLD ++RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 2 TQQELVPQVQEVLD-KLRPFLLRDGGDCELVDIEDGIVKLRLLGACGSCPSSTITLKAGI 60 Query: 173 ANILNHFVPEVKDIRTV 189 L VP + ++ V Sbjct: 61 ERALLEEVPGIVEVEQV 77 >gi|85710810|ref|ZP_01041871.1| hypothetical protein OS145_02245 [Idiomarina baltica OS145] gi|85695214|gb|EAQ33151.1| hypothetical protein OS145_02245 [Idiomarina baltica OS145] Length = 192 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 64/181 (35%), Gaps = 14/181 (7%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F + PG+ + G + D + + R P G Sbjct: 3 RISESAQKHFCKLLADQPEGTNIRVFVVNPGMPNAECGVSYCPP--DSVEPDDERLPFNG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLD---------DMGSGDFIESDSAVVQRIKEVLDNRVR 130 P + + + + + + D+ ++ R++ V+ + Sbjct: 61 FDAVVDSGSAPFLEDAVIDFEEQELGSQLTLKAPNAKARKVADDAPLIDRVEYVIQAEIN 120 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRT 188 P +A GG ++ DG L G C+GC T+K G+ L P E+ +R Sbjct: 121 PQLANHGGHVLVTEITEDGKAVLQFGGGCNGCSMIDVTVKNGIEKELIERFPDEITGVRD 180 Query: 189 V 189 V Sbjct: 181 V 181 >gi|238604262|ref|XP_002396156.1| hypothetical protein MPER_03666 [Moniliophthora perniciosa FA553] gi|215468178|gb|EEB97086.1| hypothetical protein MPER_03666 [Moniliophthora perniciosa FA553] Length = 115 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 3/69 (4%) Query: 124 VLDNRVRPAVARDGGDIVFKGYRD---GIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 ++ RVRPA+ DGGDI ++G+ + G+V + ++G+C GC S++ TLK G+ +L H++ Sbjct: 21 AVETRVRPAIQEDGGDIEYRGFDEDGSGLVKIKLKGSCRGCDSSTVTLKSGIERMLMHYI 80 Query: 181 PEVKDIRTV 189 PEVK + V Sbjct: 81 PEVKGVEQV 89 >gi|120596952|ref|YP_961526.1| putative DNA uptake protein [Shewanella sp. W3-18-1] gi|146294876|ref|YP_001185300.1| putative DNA uptake protein [Shewanella putrefaciens CN-32] gi|150383450|sp|A1RE77|NFUA_SHESW RecName: Full=Fe/S biogenesis protein nfuA gi|166990531|sp|A4YC18|NFUA_SHEPC RecName: Full=Fe/S biogenesis protein nfuA gi|120557045|gb|ABM22972.1| HesB/YadR/YfhF-family protein [Shewanella sp. W3-18-1] gi|145566566|gb|ABP77501.1| HesB/YadR/YfhF-family protein [Shewanella putrefaciens CN-32] gi|319424543|gb|ADV52617.1| IscR-regulated protein YhgI [Shewanella putrefaciens 200] Length = 192 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 68/182 (37%), Gaps = 16/182 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F I PG A G + D + + + G Sbjct: 3 TISDAAQAHFVKLLADQPEGTHIRVFVISPGTAQAECGVSYCPP--DAVESDDIELEFNG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 P + + D D +GS + D+ +V+RI+ V+ + + Sbjct: 61 FNAMVDEKSAPFLEEATI-DFVTDQLGSQLTLKAPNAKMRKVSGDAPLVERIEYVIQSEI 119 Query: 130 RPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIR 187 P +A GG+I+ +G+ L G C+GC TLK G+ L P E+ +R Sbjct: 120 NPQLASHGGNIMLVEITSEGVAVLQFGGGCNGCSQVDITLKDGIEKQLLDMFPGELTGVR 179 Query: 188 TV 189 V Sbjct: 180 DV 181 >gi|114561432|ref|YP_748945.1| putative DNA uptake protein [Shewanella frigidimarina NCIMB 400] gi|119370614|sp|Q089F8|NFUA_SHEFN RecName: Full=Fe/S biogenesis protein nfuA gi|114332725|gb|ABI70107.1| HesB/YadR/YfhF-family protein [Shewanella frigidimarina NCIMB 400] Length = 192 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 69/182 (37%), Gaps = 16/182 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F I PG A G + D + + + P G Sbjct: 3 TISDTAQAHFVKLLADQPEGTHIRVFVISPGTAQAECGVSYCPP--DAAEADDVELPFNG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 P + + + D D +GS + D+ +V+RI+ ++ + + Sbjct: 61 FSAMVDEKSAPFLDDASI-DFVTDQLGSQLTLKAPNAKMRKVSGDAPLVERIEYIIQSEI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIR 187 P +A GG+I+ G+ L G C+GC TLK G+ L P E+ +R Sbjct: 120 NPQLASHGGNIMLVEITEAGVAVLQFGGGCNGCSQVDITLKDGIEKQLLDMFPTELTGVR 179 Query: 188 TV 189 V Sbjct: 180 DV 181 >gi|116783204|gb|ABK22836.1| unknown [Picea sitchensis] Length = 248 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 102 LDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGC 161 ++ + S E + + ++ VLD VRP + DGG++ +V L ++GAC C Sbjct: 84 VEAIASPPSTEGLALTEENVEMVLDE-VRPYLMSDGGNVELYDIDGLVVKLKLQGACGSC 142 Query: 162 PSASETLKYGVANILNHFVPEVKDIRTV 189 PS+ T+K G+ L +PE+ + V Sbjct: 143 PSSLMTMKMGIERRLMEQIPEIVAVEQV 170 Score = 44.4 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 5/89 (5%) Query: 100 MKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGAC 158 ++ + E+ + + E + +RP + GG + + IV + + G Sbjct: 162 PEIVAVEQVMDGETGLELNEENVEKVLAEIRPYLVGTGGGELELVEIEEPIVKVRIGGPA 221 Query: 159 SGCPSASETLKYGVANILNHFVPEVKDIR 187 +G T++ V L +P + ++ Sbjct: 222 AG----VMTVRVAVTQKLREKIPAIAAVQ 246 >gi|301155452|emb|CBW14918.1| predicted gluconate transport associated protein [Haemophilus parainfluenzae T3T1] Length = 194 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 63/180 (35%), Gaps = 14/180 (7%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF + + RIF + PG G + + ++ Sbjct: 6 ISDAAQAHFRKLLDTQEEGTNIRIFVVNPGTPGAECGVSYCPPNSVEATDTEMKYDTFSA 65 Query: 81 IMEHFISGDPIIHNGGLGDMKLD---------DMGSGDFIESDSAVVQRIKEVLDNRVRP 131 ++ P + + + + + + D+ +++R++ V+ ++ P Sbjct: 66 FVDEIS--LPFLEDAEIDYVTEELGAQLTLKAPNAKMRKVADDAPLIERVEYVIQTQINP 123 Query: 132 AVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRTV 189 +A GG I DG L G C+GC TLK GV L P E+K R V Sbjct: 124 QLASHGGKITLIEITDDGYAVLQFGGGCNGCSMVDVTLKDGVEKQLVALFPNELKGARDV 183 >gi|24376092|ref|NP_720135.1| putative DNA uptake protein [Shewanella oneidensis MR-1] gi|51702012|sp|Q8E8P2|NFUA_SHEON RecName: Full=Fe/S biogenesis protein nfuA gi|24351118|gb|AAN57579.1|AE015893_8 yhgI protein [Shewanella oneidensis MR-1] Length = 192 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 68/182 (37%), Gaps = 16/182 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F I PG A G + D + + + G Sbjct: 3 TISDAAQAHFVKLLADQPEGTHIRVFVISPGTAQAECGVSYCPP--DAVESDDIELAFNG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 P + + D D +GS + D+ +V+RI+ V+ + + Sbjct: 61 FSAMVDEKSAPFLEEASI-DFVTDQLGSQLTLKAPNAKMRKVAGDAPLVERIEYVIQSEI 119 Query: 130 RPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIR 187 P +A GG+I+ +G+ L G C+GC TLK G+ L P E+ +R Sbjct: 120 NPQLASHGGNIMLVEITGEGVAVLQFGGGCNGCSQVDITLKDGIEKQLLDMFPGELTGVR 179 Query: 188 TV 189 V Sbjct: 180 DV 181 >gi|332707425|ref|ZP_08427474.1| thioredoxin-like protein [Lyngbya majuscula 3L] gi|332353776|gb|EGJ33267.1| thioredoxin-like protein [Lyngbya majuscula 3L] Length = 80 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 E+ + + ++ VLD +RP + DGG++ V L ++GAC CPS++ TL+ Sbjct: 1 MSETMALTPENVETVLDE-MRPYLMADGGNVELVELDGPTVKLRLQGACGSCPSSTMTLR 59 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ L F+PE+ ++ V Sbjct: 60 MGIERRLKEFIPEILEVEQV 79 >gi|172035933|ref|YP_001802434.1| NifU-like protein [Cyanothece sp. ATCC 51142] gi|171697387|gb|ACB50368.1| NifU-like protein [Cyanothece sp. ATCC 51142] Length = 80 Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +++VLD +RP + DGG++ IV L ++GAC CPS++ TLK G+ L Sbjct: 10 DNVEQVLDE-MRPYLMADGGNVELVEIEGPIVKLRLQGACGSCPSSTMTLKMGIERRLRE 68 Query: 179 FVPEVKDIRT 188 +PE+ ++ Sbjct: 69 MIPEIAEVEQ 78 >gi|325576565|ref|ZP_08147283.1| Fe/S-biogenesis protein NfuA [Haemophilus parainfluenzae ATCC 33392] gi|325161128|gb|EGC73243.1| Fe/S-biogenesis protein NfuA [Haemophilus parainfluenzae ATCC 33392] Length = 194 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 63/180 (35%), Gaps = 14/180 (7%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF + + RIF + PG G + + ++ Sbjct: 6 ISDAAQAHFRKLLDTQEEGTNIRIFVVNPGTPGAECGVSYCPPNSVEATDTEMKYDTFSA 65 Query: 81 IMEHFISGDPIIHNGGLGDMKLD---------DMGSGDFIESDSAVVQRIKEVLDNRVRP 131 ++ P + + + + + + D+ +++R++ V+ ++ P Sbjct: 66 FVDEIS--LPFLEDAEIDYVTEELGAQLTLKAPNAKMRKVADDAPLIERVEYVIQTQINP 123 Query: 132 AVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRTV 189 +A GG I DG L G C+GC TLK GV L P E+K R V Sbjct: 124 QLASHGGKITLIEITDDGYAVLQFGGGCNGCSMVDVTLKDGVEKQLVSLFPNELKGARDV 183 >gi|163748829|ref|ZP_02156081.1| yhgI protein [Shewanella benthica KT99] gi|161331603|gb|EDQ02408.1| yhgI protein [Shewanella benthica KT99] Length = 192 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 70/182 (38%), Gaps = 16/182 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F I PG A+ G + D + + G Sbjct: 3 TISDAAQAHFVTLLADQPEGTHIRVFVISPGTATAECGVSYCPP--DAVEADDTELEFTG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 P + + + D D +GS + SD+++ +RI+ V+ + + Sbjct: 61 FNAMVDEKSVPFLEDATI-DFVTDQLGSQLTLKAPNAKMRKVNSDASLNERIEYVIQSEI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIR 187 P +A GG+I+ +G+ L G C+GC TLK G+ L P E+ ++ Sbjct: 120 NPQLASHGGNIMLMEVSEEGVAILQFGGGCNGCSMVDVTLKDGIEKQLLEMFPGELTGVK 179 Query: 188 TV 189 + Sbjct: 180 DI 181 >gi|114049364|ref|YP_739914.1| putative DNA uptake protein [Shewanella sp. MR-7] gi|119370616|sp|Q0HPU8|NFUA_SHESR RecName: Full=Fe/S biogenesis protein nfuA gi|113890806|gb|ABI44857.1| HesB/YadR/YfhF-family protein [Shewanella sp. MR-7] Length = 192 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 69/182 (37%), Gaps = 16/182 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F I PG A G + D + + + G Sbjct: 3 TISDAAQAHFVKLLADQPEGTHIRVFVISPGTAQAECGVSYCPP--DAVESDDIELEFNG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 P + + D D +GS + SD+ + +R++ V+ + + Sbjct: 61 FSAMVDEKSAPFLEEASI-DFVTDQLGSQLTLKAPNAKMRKVSSDAPLAERVEYVIQSEI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIR 187 P +A GG+I+ ++G+ L G C+GC TLK G+ L P E+ +R Sbjct: 120 NPQLASHGGNIMLVEITQEGVAVLQFGGGCNGCSQVDITLKDGIEKQLLDMFPGELTGVR 179 Query: 188 TV 189 V Sbjct: 180 DV 181 >gi|148976499|ref|ZP_01813195.1| predicted gluconate transport associated protein [Vibrionales bacterium SWAT-3] gi|145964075|gb|EDK29332.1| predicted gluconate transport associated protein [Vibrionales bacterium SWAT-3] Length = 194 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 64/182 (35%), Gaps = 10/182 (5%) Query: 17 IPGQVVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRP 75 + + HF+N + R+F + PG + G + + L+ Sbjct: 1 MSNITITETAQTHFANLLSQQPEGTNIRVFVVNPGTQNAECGVSYCPTDAIEASDTELKF 60 Query: 76 PVLGMIME-----HFISGDPIIHNGGLGDMKLDDMGSGDFIE--SDSAVVQRIKEVLDNR 128 ++ + +G + + D+ +++R++ + + Sbjct: 61 EAFSAYVDELSLPFLDEAEIDFVTDKMGSQLTLKAPNAKMRKVADDAPLLERVEYAIQTQ 120 Query: 129 VRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDI 186 V P +A GG + DG ++ G C+GC TLK G+ +L F E+ + Sbjct: 121 VNPQLAGHGGHVSLVEITEDGAAIVAFGGGCNGCSMVDVTLKEGIEKELLQQFEGELTAV 180 Query: 187 RT 188 R Sbjct: 181 RD 182 >gi|284008807|emb|CBA75563.1| gluconate metabolism protein (iron-sulphur cluster biosynthesis) [Arsenophonus nasoniae] Length = 192 Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 70/180 (38%), Gaps = 16/180 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ + R+F I PG S G + + L+ L Sbjct: 4 ITEAAQAHFAKLLANQEPGTQIRVFVINPGTPSAECGVSYCPPDAIESTDIELKFAKLSA 63 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 ++ + P + + D D +GS + D+ +++R++ V+ +++ Sbjct: 64 YVDEISA--PFLEEAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLIERVEYVIQSQIN 120 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRT 188 P +A GG + DG L G C+GC TLK G+ L + P E+K ++ Sbjct: 121 PQLAGHGGRVSLMEITDDGYAILQFGGGCNGCSMVDITLKEGIEKQLLNMFPDELKGVKD 180 >gi|315635110|ref|ZP_07890388.1| Fe/S-biogenesis protein NfuA [Aggregatibacter segnis ATCC 33393] gi|315476072|gb|EFU66826.1| Fe/S-biogenesis protein NfuA [Aggregatibacter segnis ATCC 33393] Length = 194 Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 14/181 (7%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + E HF + + RIF + PG S G + + ++ Sbjct: 5 TISAEAQAHFRRLLDQQEEGTNIRIFVVNPGTPSAECGVSYCPPNSVEASDTEMKYDTFS 64 Query: 80 MIMEHFISGDPIIHNGGLGDMKLD---------DMGSGDFIESDSAVVQRIKEVLDNRVR 130 ++ P + + + + + + D+ +++R++ V+ ++ Sbjct: 65 AFVDDIS--LPFLEDAEIDYVTEELGAQLTLKAPNAKMRKVADDAPLIERVEYVIQTQIN 122 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRT 188 P +A GG I DG L G C+GC TLK GV L P E+K + Sbjct: 123 PQLASHGGKITLLEITDDGYAILQFGGGCNGCSMVDVTLKDGVEKQLISLFPDELKGAKD 182 Query: 189 V 189 V Sbjct: 183 V 183 >gi|170078022|ref|YP_001734660.1| NifU like protein [Synechococcus sp. PCC 7002] gi|169885691|gb|ACA99404.1| NifU like protein [Synechococcus sp. PCC 7002] Length = 78 Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + + ++ LD +RP + DGG++ +V L ++GAC CPS++ TL+ G+ Sbjct: 4 ALTTENVEATLDE-LRPYLKADGGNVELVEIDGPVVKLRLQGACGSCPSSTMTLRMGIER 62 Query: 175 ILNHFVPEVKDIRTV 189 L +PE+ ++ V Sbjct: 63 RLRENIPEIAEVEQV 77 >gi|313230549|emb|CBY18765.1| unnamed protein product [Oikopleura dioica] Length = 146 Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 2/76 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVA 173 VV IKE+LD R+RP V DGGDI F + G++ LS+ GAC+ CPS+ TLK+GV Sbjct: 48 EVVAMIKELLDTRIRPTVMEDGGDIAFVSFDPDTGVLQLSLIGACATCPSSVVTLKHGVE 107 Query: 174 NILNHFVPEVKDIRTV 189 N++ ++PE+ ++ + Sbjct: 108 NMMKFYIPEITEVEQI 123 >gi|254430627|ref|ZP_05044330.1| NifU domain protein [Cyanobium sp. PCC 7001] gi|197625080|gb|EDY37639.1| NifU domain protein [Cyanobium sp. PCC 7001] Length = 88 Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 103 DDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCP 162 + + + ++ ++ LD +RP + DGG++ IV + ++GAC CP Sbjct: 2 TTEAASTSQDPRALTIENVERTLDE-LRPYLMADGGNVEVVEIDGPIVKVRLQGACGSCP 60 Query: 163 SASETLKYGVANILNHFVPEVKDIRTV 189 S++ TLK G+ L +PEV ++ V Sbjct: 61 SSTMTLKMGIERKLREAIPEVSEVVQV 87 >gi|159028416|emb|CAO89859.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 78 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +++VLD +RP + DGG++ +V + ++GAC CPS++ TLK G+ L Sbjct: 8 DNVEKVLDE-MRPYLMSDGGNVELVEIDGPVVKVRLQGACGSCPSSTMTLKMGIERRLRE 66 Query: 179 FVPEVKDIRT 188 +PE+ ++ Sbjct: 67 MIPEIAEVEQ 76 >gi|126652035|ref|ZP_01724224.1| nitrogen fixation protein (NifU protein) [Bacillus sp. B14905] gi|169826170|ref|YP_001696328.1| NifU-like protein [Lysinibacillus sphaericus C3-41] gi|299536342|ref|ZP_07049655.1| NifU-like protein [Lysinibacillus fusiformis ZC1] gi|126591125|gb|EAZ85235.1| nitrogen fixation protein (NifU protein) [Bacillus sp. B14905] gi|168990658|gb|ACA38198.1| NifU-like protein [Lysinibacillus sphaericus C3-41] gi|298728328|gb|EFI68890.1| NifU-like protein [Lysinibacillus fusiformis ZC1] Length = 78 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +++ + +++EVLD ++RP + RDGGD DG+V L + GAC CPS++ TLK G+ Sbjct: 2 AEATINDQVQEVLD-KLRPFLLRDGGDCELVDVEDGVVKLRLLGACGSCPSSTITLKAGI 60 Query: 173 ANILNHFVPEVKDIRTV 189 L VP + ++ V Sbjct: 61 ERALLEEVPGIVEVEQV 77 >gi|302342797|ref|YP_003807326.1| nitrogen-fixing NifU domain protein [Desulfarculus baarsii DSM 2075] gi|301639410|gb|ADK84732.1| nitrogen-fixing NifU domain protein [Desulfarculus baarsii DSM 2075] Length = 73 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + QR++E LD ++RPA+ +DGGD+ DG+V + ++GAC GCP + TLK G+ + Sbjct: 1 MKQRVQEALD-KIRPALQKDGGDVKLVDVSDDGVVKVQLQGACHGCPMSQMTLKMGIEKV 59 Query: 176 LNHFVPEVKDIRTV 189 L VPEV+ + +V Sbjct: 60 LKQNVPEVQKVESV 73 >gi|262273566|ref|ZP_06051380.1| NfuA Fe-S protein maturation [Grimontia hollisae CIP 101886] gi|262222544|gb|EEY73855.1| NfuA Fe-S protein maturation [Grimontia hollisae CIP 101886] Length = 194 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 70/182 (38%), Gaps = 16/182 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF E + R+F + PG + G + + ++ Sbjct: 5 TISESAQSHFVKLLEQQPEGTNIRVFVVNPGTQNAECGVSYCPQDAVEATDTEIKFNGFS 64 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ P + + + D D MGS + D+ +++R++ V+ +V Sbjct: 65 AYIDELS--LPFLEDAEI-DFVTDKMGSQLTLKAPNAKMRKVADDAPLLERVEYVIQTQV 121 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIR 187 P +A GG I DG+ + G C+GC TLK G+ +L F E+K +R Sbjct: 122 NPQLAGHGGHINLIEITEDGVAVIQFGGGCNGCSMVDVTLKDGIEKQLLEEFSGELKGVR 181 Query: 188 TV 189 V Sbjct: 182 DV 183 >gi|251793451|ref|YP_003008180.1| putative DNA uptake protein [Aggregatibacter aphrophilus NJ8700] gi|247534847|gb|ACS98093.1| IscR-regulated protein YhgI [Aggregatibacter aphrophilus NJ8700] Length = 194 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 63/180 (35%), Gaps = 14/180 (7%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF E + RIF + PG S G + + ++ Sbjct: 6 ISEAAQAHFRRLLEQQEEGTNIRIFVVNPGTPSAECGVSYCPPNSVEASDTEIKFTGFSA 65 Query: 81 IMEHFISGDPIIHNGGLGDMKLD---------DMGSGDFIESDSAVVQRIKEVLDNRVRP 131 ++ P + + + + + D+ +++R++ V+ ++ P Sbjct: 66 FVDEIS--LPFLEEAEIDYVTEELGAQLTLKAPNAKMRKVADDAPLIERVEYVIQTQINP 123 Query: 132 AVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRTV 189 +A GG I DG L G C+GC TLK GV L P E+K R V Sbjct: 124 QLASHGGKITLLEITDDGYAILQFGGGCNGCSMVDVTLKDGVEKQLISLFPNELKGARDV 183 >gi|218245975|ref|YP_002371346.1| nitrogen-fixing NifU domain-containing protein [Cyanothece sp. PCC 8801] gi|257059024|ref|YP_003136912.1| nitrogen-fixing NifU domain protein [Cyanothece sp. PCC 8802] gi|218166453|gb|ACK65190.1| nitrogen-fixing NifU domain protein [Cyanothece sp. PCC 8801] gi|256589190|gb|ACV00077.1| nitrogen-fixing NifU domain protein [Cyanothece sp. PCC 8802] Length = 79 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 +E+ ++ VLD +RP + DGG++ +V L ++GAC CPS++ TL+ Sbjct: 1 METMELTPDNVETVLDE-MRPYLMADGGNVELVELDGPVVKLRLQGACGSCPSSTMTLRM 59 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ L +PE+ ++ V Sbjct: 60 GIERRLREMIPEIAEVEQV 78 >gi|294138942|ref|YP_003554920.1| yhgI protein [Shewanella violacea DSS12] gi|293325411|dbj|BAJ00142.1| yhgI protein [Shewanella violacea DSS12] Length = 192 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 70/182 (38%), Gaps = 16/182 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F I PG A+ G + + D L G Sbjct: 3 TISDAAQAHFVTLLADQPEGTHIRVFVISPGTATAECGVSYCPPDAVESDDTEL--EFTG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 P + + + D D +GS + SD+++ +RI+ V+ + + Sbjct: 61 FNAMVDAKSVPFLEDATI-DFVTDQLGSQLTLKAPNAKMRKVNSDASLNERIEYVIQSEI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIR 187 P +A GG+I+ +G+ L G C+GC TLK G+ L P E+ +R Sbjct: 120 NPQLASHGGNIMLMEVSEEGVAILQFGGGCNGCSMVDVTLKNGIEKQLLDMFPGELTGVR 179 Query: 188 TV 189 + Sbjct: 180 DI 181 >gi|77919925|ref|YP_357740.1| NifU-like protein [Pelobacter carbinolicus DSM 2380] gi|77546008|gb|ABA89570.1| NifU-like protein [Pelobacter carbinolicus DSM 2380] Length = 103 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 2/72 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN 174 + +++ E+LD ++RP++ DGGD+ DG+V + ++GAC CP ++ TLK G+ Sbjct: 28 QMKEQVLEILD-KIRPSLQADGGDVELVDISEDGVVKVRLKGACGSCPMSTMTLKMGIER 86 Query: 175 ILNHFVPEVKDI 186 L VP VK++ Sbjct: 87 TLKAQVPGVKEV 98 >gi|318040472|ref|ZP_07972428.1| NifU-like protein [Synechococcus sp. CB0101] Length = 96 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + ++ ++ LD +RP + DGG++ IV + ++GAC CPS++ TLK G+ Sbjct: 22 ALTIENVERTLDE-LRPYLMADGGNVEVVEIDGPIVKVRLQGACGSCPSSTMTLKMGIER 80 Query: 175 ILNHFVPEVKDIRTV 189 L +PEV ++ V Sbjct: 81 KLREAIPEVSEVVQV 95 >gi|52081716|ref|YP_080507.1| hypothetical protein BL02118 [Bacillus licheniformis ATCC 14580] gi|52787102|ref|YP_092931.1| YutI [Bacillus licheniformis ATCC 14580] gi|319647633|ref|ZP_08001851.1| nitrogen fixation protein [Bacillus sp. BT1B_CT2] gi|52004927|gb|AAU24869.1| Conserved protein YutI [Bacillus licheniformis ATCC 14580] gi|52349604|gb|AAU42238.1| YutI [Bacillus licheniformis ATCC 14580] gi|317389974|gb|EFV70783.1| nitrogen fixation protein [Bacillus sp. BT1B_CT2] Length = 79 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ + ++++EVLD ++RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 3 TEVEMKEQVQEVLD-KLRPFLLRDGGDCELVDVEDGIVKLRLLGACGSCPSSTITLKAGI 61 Query: 173 ANILNHFVPEVKDIRTV 189 L VP V ++ V Sbjct: 62 ERALLEEVPGVIEVEQV 78 >gi|90581403|ref|ZP_01237198.1| hypothetical protein VAS14_21772 [Vibrio angustum S14] gi|90437380|gb|EAS62576.1| hypothetical protein VAS14_21772 [Vibrio angustum S14] Length = 192 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 68/182 (37%), Gaps = 16/182 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F + PG S G + + ++ + Sbjct: 3 TITESAQQHFGKLLAQQPEGTNIRVFVVNPGTQSAECGVSYCPPEAVEASDTEIKLELFS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ P + + + D D MGS + D+ +++R+ V+ +V Sbjct: 63 AFLDELS--LPFLEDAEI-DFVTDKMGSQLTLKAPNAKVRKVSDDAPLMERVDYVIQTQV 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIR 187 P +A GG + DG+ L G C+GC TLK G+ +L F E+ +R Sbjct: 120 NPQLAGHGGHVSLSEITEDGVAILQFGGGCNGCSMVDVTLKEGIEKELLAQFEGELTGVR 179 Query: 188 TV 189 + Sbjct: 180 DI 181 >gi|330447159|ref|ZP_08310809.1| iron-sulfur cluster scaffold protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491350|dbj|GAA05306.1| iron-sulfur cluster scaffold protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 192 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 68/182 (37%), Gaps = 16/182 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F + PG S G + + ++ + Sbjct: 3 TISESAQQHFGKLLAQQPEGTNIRVFVVNPGTQSAECGVSYCPPEAVEASDTEIKLELFS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ P + + + D D MGS + D+ +++R+ V+ +V Sbjct: 63 AFIDELS--LPFLADAEI-DFVTDKMGSQLTLKAPNAKVRKVADDAPLMERVDYVIQTQV 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIR 187 P +A GG + DG+ L G C+GC TLK G+ +L F E+ +R Sbjct: 120 NPQLAGHGGHVSLSEITEDGVAILQFGGGCNGCSMVDVTLKEGIEKELLAQFEGELTGVR 179 Query: 188 TV 189 + Sbjct: 180 DI 181 >gi|8571395|gb|AAF76865.1|AF232919_4 NifU-like protein [Sinorhizobium meliloti] Length = 63 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 41/63 (65%), Positives = 55/63 (87%) Query: 127 NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 RVRPAVA+DGGDI F+G++DG VFL+M+GACSGCPS++ TL++GV N+L HFVPEV+ + Sbjct: 1 TRVRPAVAQDGGDITFRGFKDGTVFLNMKGACSGCPSSTATLRHGVQNLLRHFVPEVEAV 60 Query: 187 RTV 189 +V Sbjct: 61 ESV 63 >gi|289812184|ref|ZP_06542813.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 173 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 15/174 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ +L Sbjct: 3 RISDAAQAHFAKLLANQKEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTALKFDLLT 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ L +++ Sbjct: 63 AYVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYALQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 P +A GG + +G L G C+GC TLK G+ L + PE Sbjct: 120 NPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPE 173 >gi|145334787|ref|NP_001078739.1| NFU2 (NIFU-LIKE PROTEIN 2); structural molecule [Arabidopsis thaliana] gi|222422967|dbj|BAH19468.1| AT5G49940 [Arabidopsis thaliana] gi|332008491|gb|AED95874.1| NifU-like protein 2 [Arabidopsis thaliana] Length = 185 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ VLD +RP + DGG++ IV + ++GAC CPS++ T+K G+ L Sbjct: 86 TEENVESVLDE-IRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRL 144 Query: 177 NHFVPEVKDIRT 188 +PE+ + Sbjct: 145 MEKIPEIVAVEA 156 >gi|126660171|ref|ZP_01731289.1| putative NifU-like protein [Cyanothece sp. CCY0110] gi|126618536|gb|EAZ89287.1| putative NifU-like protein [Cyanothece sp. CCY0110] Length = 80 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++ VLD +RP + DGG++ IV L ++GAC CPS++ TLK G+ L Sbjct: 10 DNVETVLDE-MRPYLMADGGNVELVEIEGPIVKLRLQGACGSCPSSTMTLKMGIERRLRE 68 Query: 179 FVPEVKDIRT 188 +PE+ ++ Sbjct: 69 MIPEIAEVEQ 78 >gi|67921653|ref|ZP_00515171.1| Nitrogen-fixing NifU, C-terminal [Crocosphaera watsonii WH 8501] gi|67856765|gb|EAM52006.1| Nitrogen-fixing NifU, C-terminal [Crocosphaera watsonii WH 8501] Length = 80 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++ VLD +RP + DGG++ +V L ++GAC CPS++ TL+ G+ L Sbjct: 10 DNVETVLDE-MRPYLMADGGNVELVDIEGPVVKLRLQGACGSCPSSTMTLRMGIERRLRE 68 Query: 179 FVPEVKDIRTV 189 +PE+ ++ V Sbjct: 69 MIPEIGEVEQV 79 >gi|293391255|ref|ZP_06635589.1| IscR-regulated protein YhgI [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951789|gb|EFE01908.1| IscR-regulated protein YhgI [Aggregatibacter actinomycetemcomitans D7S-1] Length = 194 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 14/181 (7%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + + RIF + PG + G + + D ++ Sbjct: 5 TISEAAQAHFRRLLDQQEEGTHIRIFVVNPGTPNAECGVSYCPPNSVEADDTEIKYDSFS 64 Query: 80 MIMEHFISGDPIIHNGGLGDMKLD---------DMGSGDFIESDSAVVQRIKEVLDNRVR 130 ++ P + + + + + + D+ +++R++ V+ ++ Sbjct: 65 AFVDEIS--LPFLEDAEIDYVTEELGAQLTLKAPNAKMRKVADDAPLIERVEYVIQTQIN 122 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRT 188 P +A GG I DG L G C+GC TLK GV L + P E+ R Sbjct: 123 PQLASHGGKITLLEITDDGYAILQFGGGCNGCSMVDVTLKDGVEKQLVNIFPGELNGARD 182 Query: 189 V 189 V Sbjct: 183 V 183 >gi|284929666|ref|YP_003422188.1| thioredoxin-like protein [cyanobacterium UCYN-A] gi|284810110|gb|ADB95807.1| thioredoxin-like protein [cyanobacterium UCYN-A] Length = 76 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +++VLD +RP + DGG++ IV L ++GAC CPS++ TLK G+ L Sbjct: 7 NVEQVLDE-LRPYLIADGGNVELVEIDGAIVKLRLQGACGSCPSSTMTLKMGIERRLKEM 65 Query: 180 VPEVKDIRT 188 +PEV ++ Sbjct: 66 IPEVSEVEQ 74 >gi|72383588|ref|YP_292943.1| NifU-like protein [Prochlorococcus marinus str. NATL2A] gi|124025184|ref|YP_001014300.1| NifU-like protein [Prochlorococcus marinus str. NATL1A] gi|72003438|gb|AAZ59240.1| NifU-like protein [Prochlorococcus marinus str. NATL2A] gi|123960252|gb|ABM75035.1| NifU-like protein [Prochlorococcus marinus str. NATL1A] Length = 81 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 E+ + + +++VLD +RP + DGG++ IV + ++GAC CPS++ TLK Sbjct: 3 DETLALTTENVEKVLDE-LRPFLMADGGNVEIAEIDGPIVKVRLQGACGSCPSSTMTLKM 61 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ L +PEV ++ V Sbjct: 62 GIERKLREMIPEVSEVIQV 80 >gi|126172396|ref|YP_001048545.1| putative DNA uptake protein [Shewanella baltica OS155] gi|153002690|ref|YP_001368371.1| putative DNA uptake protein [Shewanella baltica OS185] gi|160877426|ref|YP_001556742.1| putative DNA uptake protein [Shewanella baltica OS195] gi|217975268|ref|YP_002360019.1| putative DNA uptake protein [Shewanella baltica OS223] gi|304412256|ref|ZP_07393864.1| IscR-regulated protein YhgI [Shewanella baltica OS183] gi|307306040|ref|ZP_07585785.1| IscR-regulated protein YhgI [Shewanella baltica BA175] gi|166990529|sp|A3CYW3|NFUA_SHEB5 RecName: Full=Fe/S biogenesis protein nfuA gi|166990530|sp|A6WU19|NFUA_SHEB8 RecName: Full=Fe/S biogenesis protein nfuA gi|189041728|sp|A9KUY3|NFUA_SHEB9 RecName: Full=Fe/S biogenesis protein nfuA gi|254767326|sp|B8ECN4|NFUA_SHEB2 RecName: Full=Fe/S biogenesis protein nfuA gi|125995601|gb|ABN59676.1| HesB/YadR/YfhF-family protein [Shewanella baltica OS155] gi|151367308|gb|ABS10308.1| HesB/YadR/YfhF-family protein [Shewanella baltica OS185] gi|160862948|gb|ABX51482.1| IscR-regulated protein YhgI [Shewanella baltica OS195] gi|217500403|gb|ACK48596.1| IscR-regulated protein YhgI [Shewanella baltica OS223] gi|304349291|gb|EFM13701.1| IscR-regulated protein YhgI [Shewanella baltica OS183] gi|306910913|gb|EFN41340.1| IscR-regulated protein YhgI [Shewanella baltica BA175] gi|315269629|gb|ADT96482.1| IscR-regulated protein YhgI [Shewanella baltica OS678] Length = 192 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 70/182 (38%), Gaps = 16/182 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F I PG + G + D + + + G Sbjct: 3 TISDAAQAHFVKLLADQPEGTHIRVFVISPGTSQAECGVSYCPP--DAVESDDIEIEFTG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 P + + + D D +GS + D+ +V+RI+ V+ + + Sbjct: 61 FNAMVDEKSAPFLEDATI-DFVTDQLGSQLTLKAPNAKMRKVSGDAPLVERIEYVIQSEI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIR 187 P +A GG+I+ ++G+ L G C+GC TLK G+ L P E+ +R Sbjct: 120 NPQLAGHGGNIMLVEITKEGVAVLQFGGGCNGCSQVDITLKDGIEKQLLDMFPGELTGVR 179 Query: 188 TV 189 V Sbjct: 180 DV 181 >gi|327439123|dbj|BAK15488.1| thioredoxin-like protein [Solibacillus silvestris StLB046] Length = 78 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +++ +++EVLD ++RP + RDGGD +GIV L + GAC CPS++ TLK G+ Sbjct: 2 TETEQYAQVQEVLD-KLRPFLLRDGGDCELVDIEEGIVKLRLLGACGSCPSSTITLKAGI 60 Query: 173 ANILNHFVPEVKDIRTV 189 L VP + ++ V Sbjct: 61 ERALLEEVPGIVEVEQV 77 >gi|332308531|ref|YP_004436382.1| IscR-regulated protein YhgI [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175860|gb|AEE25114.1| IscR-regulated protein YhgI [Glaciecola agarilytica 4H-3-7+YE-5] Length = 192 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 14/179 (7%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF E + R+F + PG S G + D + G Sbjct: 4 ISDTAQAHFCKLLEKQEPDTNIRVFVVNPGTPSAECGVSYCPP--DAVEPTDTTLEFNGF 61 Query: 81 IMEHFISGDPIIHNGGLGDMKLD---------DMGSGDFIESDSAVVQRIKEVLDNRVRP 131 P + + + ++ D+ + +RI ++++ + P Sbjct: 62 DAVVDAESAPFLSEAEIDFVTDQMGSQLTLKAPNAKARKVDDDAPLEERINYMIESEINP 121 Query: 132 AVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIRT 188 +A GG ++ D G L G C+GC TLK G+ +L F E+ ++ Sbjct: 122 QLASHGGKVMLMEITDKGEAILQFGGGCNGCSMVDVTLKDGIEKQMLAQFSGELTAVKD 180 >gi|8777425|dbj|BAA97015.1| unnamed protein product [Arabidopsis thaliana] Length = 684 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ VLD +RP + DGG++ IV + ++GAC CPS++ T+K G+ L Sbjct: 86 TEENVESVLDE-IRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRL 144 Query: 177 NHFVPEVKDIRT 188 +PE+ + Sbjct: 145 MEKIPEIVAVEA 156 >gi|16332125|ref|NP_442853.1| NifU protein [Synechocystis sp. PCC 6803] gi|1653754|dbj|BAA18665.1| NifU protein [Synechocystis sp. PCC 6803] Length = 76 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + ++ VLD +RP + DGG++ IV + ++GAC CPS++ TLK G+ Sbjct: 2 ELTLNNVETVLDE-LRPYLMADGGNVEVVELDGPIVKVRLQGACGSCPSSTMTLKMGIER 60 Query: 175 ILNHFVPEVKDIRTV 189 L +PE+ ++ V Sbjct: 61 KLREMIPEIAEVEQV 75 >gi|166364297|ref|YP_001656570.1| NifU-like protein [Microcystis aeruginosa NIES-843] gi|166086670|dbj|BAG01378.1| NifU-like protein [Microcystis aeruginosa NIES-843] Length = 78 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +++VLD +RP + DGG++ +V L ++GAC CPS++ TLK G+ L Sbjct: 8 NNVEQVLDE-MRPYLMADGGNVELVEIDGPVVKLRLQGACGSCPSSTMTLKMGIERRLRE 66 Query: 179 FVPEVKDIRT 188 +PE+ ++ Sbjct: 67 VIPEIAEVEQ 76 >gi|229543324|ref|ZP_04432384.1| nitrogen-fixing NifU domain protein [Bacillus coagulans 36D1] gi|229327744|gb|EEN93419.1| nitrogen-fixing NifU domain protein [Bacillus coagulans 36D1] Length = 78 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + ++++EVLD ++RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 4 DTITEQVQEVLD-KLRPFLLRDGGDCELIDVEDGIVKLRLLGACGSCPSSTITLKAGIER 62 Query: 175 ILNHFVPEVKDIRTV 189 L VP V ++ V Sbjct: 63 ALFEEVPGVMEVEQV 77 >gi|17228804|ref|NP_485352.1| hypothetical protein asr1309 [Nostoc sp. PCC 7120] gi|75909243|ref|YP_323539.1| nitrogen-fixing NifU-like protein [Anabaena variabilis ATCC 29413] gi|17130656|dbj|BAB73266.1| asr1309 [Nostoc sp. PCC 7120] gi|75702968|gb|ABA22644.1| Nitrogen-fixing NifU-like protein [Anabaena variabilis ATCC 29413] Length = 76 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + ++ VLD +RP + DGG++ IV L ++GAC CPS++ TL+ G+ Sbjct: 2 ELTIDNVETVLDE-MRPYLISDGGNVELVELDGPIVKLRLQGACGSCPSSTMTLRMGIER 60 Query: 175 ILNHFVPEVKDIRTV 189 L +PE+ ++ V Sbjct: 61 RLREMIPEIAEVEQV 75 >gi|317130102|ref|YP_004096384.1| nitrogen-fixing NifU domain protein [Bacillus cellulosilyticus DSM 2522] gi|315475050|gb|ADU31653.1| nitrogen-fixing NifU domain protein [Bacillus cellulosilyticus DSM 2522] Length = 78 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +++ + +++EVLD ++RP + RDGGD+ DGIV + + GAC CPS++ TLK G+ Sbjct: 2 AEATMESQVQEVLD-KLRPFLLRDGGDVELVDVEDGIVKVRLMGACGSCPSSTITLKAGI 60 Query: 173 ANILNHFVPEVKDIRTV 189 L VP VK++ V Sbjct: 61 ERALLEEVPGVKELEQV 77 >gi|300867628|ref|ZP_07112276.1| nitrogen-fixing NifU-like [Oscillatoria sp. PCC 6506] gi|300334389|emb|CBN57446.1| nitrogen-fixing NifU-like [Oscillatoria sp. PCC 6506] Length = 79 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + + + +++VLD +RP + DGG++ +V L ++GAC CPS++ TL+ G+ Sbjct: 3 TLALTRENVEQVLDE-LRPYLMSDGGNVELVEIEGPVVQLRLQGACGSCPSSAMTLRMGI 61 Query: 173 ANILNHFVPEVKDIRTV 189 L +PE+ ++ V Sbjct: 62 ERRLRETIPEIAEVEQV 78 >gi|260774744|ref|ZP_05883647.1| NfuA Fe-S protein maturation [Vibrio coralliilyticus ATCC BAA-450] gi|260609306|gb|EEX35458.1| NfuA Fe-S protein maturation [Vibrio coralliilyticus ATCC BAA-450] Length = 195 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 16/181 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+N + R+F + PG + G + + ++ Sbjct: 6 TITENAQKHFANLLSQQPEGTNIRVFVVNPGTQNAECGVSYCPTEAIEATDTEIKYEGFS 65 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ P + + + D D MGS + D+ +V+R++ V+ +V Sbjct: 66 AYVDELS--LPFLEDAEI-DFVTDKMGSQLTLKAPNAKMRKVSDDAPLVERVEYVIQTQV 122 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIR 187 P +A GG + DGI ++ G C+GC TLK G+ +L F E+ +R Sbjct: 123 NPQLAGHGGHVNLVEITEDGIAIVAFGGGCNGCSMVDVTLKEGIEKELLQQFEGELSAVR 182 Query: 188 T 188 Sbjct: 183 D 183 >gi|220907447|ref|YP_002482758.1| nitrogen-fixing NifU domain-containing protein [Cyanothece sp. PCC 7425] gi|219864058|gb|ACL44397.1| nitrogen-fixing NifU domain protein [Cyanothece sp. PCC 7425] Length = 76 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 +++VLD +RP + DGG++ IV L ++GAC CPS++ TL+ G+ Sbjct: 2 ELTTDNVEKVLDE-LRPYLMADGGNVELVELEGPIVRLRLQGACGSCPSSTMTLRMGIER 60 Query: 175 ILNHFVPEVKDIRTV 189 L +PE+ ++ V Sbjct: 61 KLRESIPEIAEVEQV 75 >gi|209523451|ref|ZP_03272006.1| nitrogen-fixing NifU domain protein [Arthrospira maxima CS-328] gi|209496193|gb|EDZ96493.1| nitrogen-fixing NifU domain protein [Arthrospira maxima CS-328] Length = 79 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + + + ++ VLD +RP + DGG++ IV L ++GAC CPS++ TLK G+ Sbjct: 3 TLALTPENVETVLDE-LRPYLMADGGNVEVVELDGPIVRLRLQGACGSCPSSTMTLKMGI 61 Query: 173 ANILNHFVPEVKDIRTV 189 L +PE+ ++ +V Sbjct: 62 ERRLRERIPEIAEVESV 78 >gi|261867263|ref|YP_003255185.1| putative DNA uptake protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412595|gb|ACX81966.1| IscR-regulated protein YhgI [Aggregatibacter actinomycetemcomitans D11S-1] Length = 194 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 14/181 (7%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + + RIF + PG + G + + D ++ Sbjct: 5 TISEAAQAHFRRLLDQQEEDTHIRIFVVNPGTPNAECGVSYCPPNSVEADDTEIKYDSFS 64 Query: 80 MIMEHFISGDPIIHNGGLGDMKLD---------DMGSGDFIESDSAVVQRIKEVLDNRVR 130 ++ P + + + + + + D+ +++R++ V+ ++ Sbjct: 65 AFVDEIS--LPFLEDAEIDYVTEELGAQLTLKAPNAKMRKVADDAPLIERVEYVIQTQIN 122 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRT 188 P +A GG I DG L G C+GC TLK GV L + P E+ R Sbjct: 123 PQLASHGGKITLLEITDDGYAILQFGGGCNGCSMVDVTLKDGVEKQLVNIFPGELNGARD 182 Query: 189 V 189 V Sbjct: 183 V 183 >gi|89076068|ref|ZP_01162428.1| hypothetical protein SKA34_16610 [Photobacterium sp. SKA34] gi|89048220|gb|EAR53802.1| hypothetical protein SKA34_16610 [Photobacterium sp. SKA34] Length = 194 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 68/182 (37%), Gaps = 16/182 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F + PG S G + + ++ + Sbjct: 5 TITESAQQHFGKLLAQQPEGTNIRVFVVNPGTQSAECGVSYCPPEAVEASDTEIKLELFS 64 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ P + + + D D MGS + D+ +++R+ V+ +V Sbjct: 65 AFLDELS--LPFLEDAEI-DFVTDKMGSQLTLKAPNAKVRKVSDDATLMERVDYVIQTQV 121 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIR 187 P +A GG + DG+ L G C+GC TLK G+ +L F E+ +R Sbjct: 122 NPQLAGHGGHVSLSEITEDGVAILQFGGGCNGCSMVDVTLKEGIEKELLAQFEGELTGVR 181 Query: 188 TV 189 + Sbjct: 182 DI 183 >gi|260892780|ref|YP_003238877.1| nitrogen-fixing NifU domain protein [Ammonifex degensii KC4] gi|260864921|gb|ACX52027.1| nitrogen-fixing NifU domain protein [Ammonifex degensii KC4] Length = 72 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++++ L ++RP + RDGGD+ DG+V + ++GAC GCP A TLK G+ IL Sbjct: 1 MREKVEAAL-AQIRPHLQRDGGDVELVAVEDGVVKVRLKGACGGCPMAMVTLKQGIERIL 59 Query: 177 NHFVPEVKDIRTV 189 VPEVK++ V Sbjct: 60 KEAVPEVKEVVAV 72 >gi|152977236|ref|YP_001376753.1| NifU domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025988|gb|ABS23758.1| nitrogen-fixing NifU domain protein [Bacillus cytotoxicus NVH 391-98] Length = 78 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + + +++ EVLD ++RP + RDGGD+ DGIV L + GAC CPS++ TLK G+ Sbjct: 2 ENPNMQEQVLEVLD-KLRPFLLRDGGDVELVDIEDGIVKLRLMGACGSCPSSTITLKAGI 60 Query: 173 ANILNHFVPEVKDIRTV 189 L VP V ++ V Sbjct: 61 ERALLEEVPGVIEVEQV 77 >gi|33862527|ref|NP_894087.1| NifU-like protein [Prochlorococcus marinus str. MIT 9313] gi|124023791|ref|YP_001018098.1| NifU-like protein [Prochlorococcus marinus str. MIT 9303] gi|33640640|emb|CAE20429.1| NifU-like protein [Prochlorococcus marinus str. MIT 9313] gi|123964077|gb|ABM78833.1| NifU-like protein [Prochlorococcus marinus str. MIT 9303] Length = 81 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + + ++ VLD +RP + DGG++ +V + ++GAC CPS++ TLK G Sbjct: 4 EAMALTNENVETVLDE-LRPFLMADGGNVEIVEIDGPVVKVRLQGACGSCPSSTMTLKMG 62 Query: 172 VANILNHFVPEVKDIRTV 189 + L +PEV ++ V Sbjct: 63 IERKLREMIPEVSEVVQV 80 >gi|254422508|ref|ZP_05036226.1| hypothetical protein S7335_2660 [Synechococcus sp. PCC 7335] gi|196189997|gb|EDX84961.1| hypothetical protein S7335_2660 [Synechococcus sp. PCC 7335] Length = 79 Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +++VLD +RP + DGG++ IV L ++GAC CPS++ TL+ G+ L F Sbjct: 10 NVEKVLDE-LRPYLMADGGNVELVELDGPIVKLRLQGACGSCPSSAMTLRMGIERRLREF 68 Query: 180 VPEVKDIRTV 189 +PE+ +I V Sbjct: 69 IPEIAEIEQV 78 >gi|284053033|ref|ZP_06383243.1| nitrogen-fixing NifU domain protein [Arthrospira platensis str. Paraca] gi|291566311|dbj|BAI88583.1| iron-sulfur cluster assembly factor [Arthrospira platensis NIES-39] Length = 79 Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + + + ++ VLD +RP + DGG++ IV L ++GAC CPS++ TLK G+ Sbjct: 3 TLALTPENVETVLDE-LRPYLMADGGNVEIVELDGPIVRLRLQGACGSCPSSTMTLKMGI 61 Query: 173 ANILNHFVPEVKDIRTV 189 L +PE+ ++ +V Sbjct: 62 ERRLREKIPEIAEVESV 78 >gi|254228559|ref|ZP_04921984.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262392653|ref|YP_003284507.1| NfuA Fe-S protein maturation [Vibrio sp. Ex25] gi|151938941|gb|EDN57774.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262336247|gb|ACY50042.1| NfuA Fe-S protein maturation [Vibrio sp. Ex25] Length = 194 Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 16/185 (8%) Query: 17 IPGQVVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRP 75 + + HF+N + RIF + PG + G + + + Sbjct: 1 MSNITITETAQTHFANLLGQQPEGTNIRIFVVNPGTQNAECGVSYCPPEAVEATDTEIPY 60 Query: 76 PVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVL 125 ++ P + + + D D MGS + D+ +V+R++ V+ Sbjct: 61 SGFSAYVDELS--LPFLEDAEI-DFVTDKMGSQLTLKAPNAKMRKVADDAPLVERVEYVI 117 Query: 126 DNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEV 183 +V P +A GG + DGI ++ G C+GC TLK G+ +LN F+ E+ Sbjct: 118 QTQVNPQLAGHGGHVNLVEITEDGIAIVAFGGGCNGCSMVDVTLKEGIEKELLNQFIGEL 177 Query: 184 KDIRT 188 +R Sbjct: 178 TAVRD 182 >gi|282898150|ref|ZP_06306143.1| Nitrogen-fixing NifU-like protein [Raphidiopsis brookii D9] gi|281196974|gb|EFA71877.1| Nitrogen-fixing NifU-like protein [Raphidiopsis brookii D9] Length = 76 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 ++ ++ VLD +RP + DGG++ IV L ++GAC CPS++ TL+ G+ Sbjct: 2 ELTLENVETVLDE-MRPYLMSDGGNVEVVELDGPIVKLRLQGACGSCPSSTMTLRMGIER 60 Query: 175 ILNHFVPEVKDIRTV 189 L +PE+ ++ V Sbjct: 61 RLKEMIPEIGEVEQV 75 >gi|78778799|ref|YP_396911.1| NifU-like protein [Prochlorococcus marinus str. MIT 9312] gi|123968006|ref|YP_001008864.1| NifU-like protein [Prochlorococcus marinus str. AS9601] gi|126695776|ref|YP_001090662.1| NifU-like protein [Prochlorococcus marinus str. MIT 9301] gi|157412831|ref|YP_001483697.1| NifU-like protein [Prochlorococcus marinus str. MIT 9215] gi|254525524|ref|ZP_05137576.1| NifU domain protein [Prochlorococcus marinus str. MIT 9202] gi|78712298|gb|ABB49475.1| NifU-like protein [Prochlorococcus marinus str. MIT 9312] gi|91070321|gb|ABE11238.1| NifU-like protein [uncultured Prochlorococcus marinus clone HF10-88F10] gi|123198116|gb|ABM69757.1| NifU-like protein [Prochlorococcus marinus str. AS9601] gi|126542819|gb|ABO17061.1| NifU-like protein [Prochlorococcus marinus str. MIT 9301] gi|157387406|gb|ABV50111.1| NifU-like protein [Prochlorococcus marinus str. MIT 9215] gi|221536948|gb|EEE39401.1| NifU domain protein [Prochlorococcus marinus str. MIT 9202] Length = 81 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ S + +++VLD +RP + DGG++ IV + ++GAC CPS++ TLK G Sbjct: 4 ETLSLTNENVEKVLDE-LRPFLISDGGNVEIAEIDGPIVKVRLQGACGSCPSSTMTLKMG 62 Query: 172 VANILNHFVPEVKDIRTV 189 + L +PE+ ++ V Sbjct: 63 IERKLKEMIPEISEVVQV 80 >gi|37678411|ref|NP_933020.1| putative DNA uptake protein [Vibrio vulnificus YJ016] gi|37197150|dbj|BAC92991.1| thioredoxin-like protein [Vibrio vulnificus YJ016] Length = 227 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 72/194 (37%), Gaps = 21/194 (10%) Query: 13 TLKF-----IPGQVVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKD 66 T KF + + HF+N + R+F + PG + G + Sbjct: 25 TYKFTRVFVVSNITITEAAQTHFANLLGQQPDGTNIRVFVVNPGTQNAECGVSYCPPEAV 84 Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSA 116 + + ++ P + + + D D MGS + D+ Sbjct: 85 EATDTEIPYQSFSAYVDELS--LPFLEDAEI-DYVTDKMGSQLTLKAPNAKMRKVADDAP 141 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVAN- 174 +++R++ + +V P +A GG + D G+ ++ G C+GC TLK G+ Sbjct: 142 LLERVEYAIQTQVNPQLAGHGGHVKLMEITDAGVAIVAFGGGCNGCSMVDVTLKEGIEKE 201 Query: 175 ILNHFVPEVKDIRT 188 +L F E+ +R Sbjct: 202 LLQQFSGELTAVRD 215 >gi|22298836|ref|NP_682083.1| NifU protein [Thermosynechococcus elongatus BP-1] gi|22295017|dbj|BAC08845.1| tsl1293 [Thermosynechococcus elongatus BP-1] Length = 89 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++VLD +RP + DGG++ +V L ++GAC CPS++ TL+ G+ L Sbjct: 19 ENVEKVLDE-LRPYLMADGGNVELVEIEGPVVRLRLQGACGACPSSTMTLRMGIERKLKE 77 Query: 179 FVPEVKDIRTV 189 +PE+ +++ V Sbjct: 78 SIPEIAEVQQV 88 >gi|323488633|ref|ZP_08093875.1| NifU-like protein [Planococcus donghaensis MPA1U2] gi|323397651|gb|EGA90455.1| NifU-like protein [Planococcus donghaensis MPA1U2] Length = 78 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +++ + ++ EVLD ++RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 2 TEALLEDQVMEVLD-KLRPFLLRDGGDCELVDIEDGIVKLRLLGACGSCPSSTITLKAGI 60 Query: 173 ANILNHFVPEVKDIRTV 189 L VP + ++ V Sbjct: 61 ERALVEEVPGIVEVEQV 77 >gi|91224982|ref|ZP_01260241.1| hypothetical protein V12G01_11188 [Vibrio alginolyticus 12G01] gi|269965876|ref|ZP_06179969.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|91190228|gb|EAS76498.1| hypothetical protein V12G01_11188 [Vibrio alginolyticus 12G01] gi|269829429|gb|EEZ83670.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 194 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 16/185 (8%) Query: 17 IPGQVVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRP 75 + + HF+N + RIF + PG + G + + L Sbjct: 1 MSNITITETAQTHFANLLGQQPEGTNIRIFVVNPGTQNAECGVSYCPPEAVESTDTELSY 60 Query: 76 PVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVL 125 ++ P + + + D D MGS + D+ +V+R++ V+ Sbjct: 61 SGFSAYVDELS--LPFLEDAEI-DFVTDKMGSQLTLKAPNAKMRKVADDAPLVERVEYVI 117 Query: 126 DNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEV 183 +V P +A GG + DG+ ++ G C+GC TLK G+ +LN F+ E+ Sbjct: 118 QTQVNPQLAGHGGHVNLVEITEDGVAIVAFGGGCNGCSMVDVTLKEGIEKELLNQFIGEL 177 Query: 184 KDIRT 188 +R Sbjct: 178 TAVRD 182 >gi|148241647|ref|YP_001226804.1| NifU-like protein [Synechococcus sp. RCC307] gi|147849957|emb|CAK27451.1| NifU-like protein [Synechococcus sp. RCC307] Length = 88 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 103 DDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCP 162 + + + ++ ++ LD +RP + DGG++ IV + ++GAC CP Sbjct: 2 TTDTAAATNDPQALTLENVERTLDE-LRPFLMADGGNVEVVEIDGPIVKVRLQGACGSCP 60 Query: 163 SASETLKYGVANILNHFVPEVKDIRTV 189 S++ TLK G+ L +PEV ++ V Sbjct: 61 SSTMTLKMGIERKLREAIPEVSEVVQV 87 >gi|91794875|ref|YP_564526.1| putative DNA uptake protein [Shewanella denitrificans OS217] gi|119370613|sp|Q12IC3|NFUA_SHEDO RecName: Full=Fe/S biogenesis protein nfuA gi|91716877|gb|ABE56803.1| HesB/YadR/YfhF [Shewanella denitrificans OS217] Length = 192 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 69/181 (38%), Gaps = 16/181 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF + + R+F I PG + G + D + + + G Sbjct: 4 ISDSAQAHFVKLLADQPAGTHIRVFVISPGTSQAECGVSYCPP--DAVESDDVELEFNGF 61 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 + + + D D +GS + D+ +V+RI+ V+ + + Sbjct: 62 NAMVDAKSVAYLEDASI-DFVTDQLGSQLTLKAPNAKMRKVSGDAPLVERIEYVIQSEIN 120 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNH-FVPEVKDIRT 188 P +A GG+I+ DG+ L G C+GC TLK G+ L F E+ +R Sbjct: 121 PQLASHGGNIMLVEVTDDGVAVLQFGGGCNGCSQVDITLKDGIEKQLLDLFTGELTGVRD 180 Query: 189 V 189 V Sbjct: 181 V 181 >gi|91200475|emb|CAJ73523.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 72 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++I+E L +RPA+ DGGDI Y DGIV + ++GAC CPS+ TLKYGV L Sbjct: 1 MKEKIEEAL-KGIRPALQADGGDIELVDYEDGIVKVRLKGACGSCPSSLATLKYGVEARL 59 Query: 177 NHFVPEVKDIR 187 +PE++ + Sbjct: 60 KEIIPEIESVE 70 >gi|218708212|ref|YP_002415833.1| putative DNA uptake protein [Vibrio splendidus LGP32] gi|218321231|emb|CAV17181.1| hypothetical protein VS_0148 [Vibrio splendidus LGP32] Length = 245 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 63/182 (34%), Gaps = 10/182 (5%) Query: 17 IPGQVVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRP 75 + + HF+N + R+F + PG + G + + L Sbjct: 52 VSNITITETAQTHFANLLSQQPEGTNIRVFVVNPGTQNAECGVSYCPTDAIEASDTKLSF 111 Query: 76 PVLGMIME-----HFISGDPIIHNGGLGDMKLDDMGSGDFIE--SDSAVVQRIKEVLDNR 128 ++ + +G + + D+ +++R++ + + Sbjct: 112 EAFSAYVDELSLPFLDEAEIDFVTDKMGSQLTLKAPNAKMRKVSDDATLIERVEYAIQTQ 171 Query: 129 VRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDI 186 V P +A GG + +G ++ G C+GC TLK G+ +L F E+ + Sbjct: 172 VNPQLAGHGGHVSLVEITEEGAAIVAFGGGCNGCSMVDVTLKEGIEKELLQQFEGELTAV 231 Query: 187 RT 188 R Sbjct: 232 RD 233 >gi|295695724|ref|YP_003588962.1| nitrogen-fixing NifU domain protein [Bacillus tusciae DSM 2912] gi|295411326|gb|ADG05818.1| nitrogen-fixing NifU domain protein [Bacillus tusciae DSM 2912] Length = 73 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++++E L+ R+RP + DGGD+ DG+V L + GAC CP ++ TLK G+ L Sbjct: 2 LREKVEEALE-RIRPGLQFDGGDVELVDVEDGVVTLHLIGACGACPMSTMTLKMGIERAL 60 Query: 177 NHFVPEVKDIRTV 189 VPEVK++ V Sbjct: 61 RAAVPEVKEVIAV 73 >gi|27364312|ref|NP_759840.1| Fe/S biogenesis protein NfuA [Vibrio vulnificus CMCP6] gi|320157704|ref|YP_004190083.1| NfuA Fe-S protein maturation [Vibrio vulnificus MO6-24/O] gi|27360430|gb|AAO09367.1| Protein gntY [Vibrio vulnificus CMCP6] gi|319933016|gb|ADV87880.1| NfuA, Fe-S protein maturation [Vibrio vulnificus MO6-24/O] Length = 207 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 72/194 (37%), Gaps = 21/194 (10%) Query: 13 TLKF-----IPGQVVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKD 66 T KF + + HF+N + R+F + PG + G + Sbjct: 5 TYKFTRVFVVSNITITEAAQTHFANLLGQQPDGTNIRVFVVNPGTQNAECGVSYCPPEAV 64 Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSA 116 + + ++ P + + + D D MGS + D+ Sbjct: 65 EATDTEIPYQSFSAYVDELS--LPFLEDAEI-DYVTDKMGSQLTLKAPNAKMRKVADDAP 121 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVAN- 174 +++R++ + +V P +A GG + D G+ ++ G C+GC TLK G+ Sbjct: 122 LLERVEYAIQTQVNPQLAGHGGHVKLMEITDAGVAIVAFGGGCNGCSMVDVTLKEGIEKE 181 Query: 175 ILNHFVPEVKDIRT 188 +L F E+ +R Sbjct: 182 LLQQFSGELTAVRD 195 >gi|86605616|ref|YP_474379.1| NifU domain-containing protein [Synechococcus sp. JA-3-3Ab] gi|86554158|gb|ABC99116.1| NifU domain protein [Synechococcus sp. JA-3-3Ab] Length = 80 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + +++VL N +RP + DGG++ +V L ++GAC CPS++ TLK G+ Sbjct: 6 ELTAENVEKVL-NELRPYLQADGGNVELVEIDGPVVKLRLQGACGACPSSTLTLKMGIER 64 Query: 175 ILNHFVPEVKDIRTV 189 L +P++ ++ V Sbjct: 65 KLRESIPDILEVEQV 79 >gi|149190638|ref|ZP_01868906.1| predicted gluconate transport associated protein [Vibrio shilonii AK1] gi|148835521|gb|EDL52490.1| predicted gluconate transport associated protein [Vibrio shilonii AK1] Length = 207 Score = 107 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 70/188 (37%), Gaps = 18/188 (9%) Query: 16 FIPGQVVL--VEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEH 72 F+ + HF+ + R+F + PG + G + + + Sbjct: 11 FVVSNPITITESAQSHFAKLLAQQPEGTNIRVFVVNPGTQNAECGVSYCPPEAIESNDTE 70 Query: 73 LRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIK 122 + L ++ P + + + D D MGS + D+ +++R++ Sbjct: 71 FKYEALSAYVDELS--LPFLEDAEI-DFVTDKMGSQLTLKAPNAKMRKVADDAPLMERVE 127 Query: 123 EVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFV 180 + +V P +A GG + DGI + G C+GC TLK G+ +L F Sbjct: 128 YAIQTQVNPQLAGHGGHVSLMEITEDGIAIVQFGGGCNGCSMVDVTLKEGIEKQLLQEFS 187 Query: 181 PEVKDIRT 188 E+ +R Sbjct: 188 GELTAVRD 195 >gi|51701957|sp|Q6LVQ9|NFUA_PHOPR RecName: Full=Fe/S biogenesis protein nfuA gi|46911818|emb|CAG18616.1| conserved hypothetical protein [Photobacterium profundum SS9] Length = 194 Score = 107 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 16/182 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F + PG + G + + + + Sbjct: 5 TITESAQQHFGKLLAQQPEGTNIRVFVVNPGTQNAECGVSYCPPEAVEASDTKIELELFD 64 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ P + + + D D MGS + D+ +++R+ + +V Sbjct: 65 AYLDELS--LPFLDDAEI-DFVTDKMGSQLTLKAPNAKVRKVSDDATLMERVDYAIQTQV 121 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIR 187 P +A GG++ DG+ L G C+GC TLK G+ +L F E+ +R Sbjct: 122 NPQLAGHGGNVSLAEITEDGVAILQFGGGCNGCSMVDVTLKEGIEKELLAQFAGELTGVR 181 Query: 188 TV 189 V Sbjct: 182 DV 183 >gi|229557969|ref|YP_128418.2| putative DNA uptake protein [Photobacterium profundum SS9] Length = 192 Score = 107 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 16/182 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F + PG + G + + + + Sbjct: 3 TITESAQQHFGKLLAQQPEGTNIRVFVVNPGTQNAECGVSYCPPEAVEASDTKIELELFD 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ P + + + D D MGS + D+ +++R+ + +V Sbjct: 63 AYLDELS--LPFLDDAEI-DFVTDKMGSQLTLKAPNAKVRKVSDDATLMERVDYAIQTQV 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIR 187 P +A GG++ DG+ L G C+GC TLK G+ +L F E+ +R Sbjct: 120 NPQLAGHGGNVSLAEITEDGVAILQFGGGCNGCSMVDVTLKEGIEKELLAQFAGELTGVR 179 Query: 188 TV 189 V Sbjct: 180 DV 181 >gi|30022992|ref|NP_834623.1| NifU protein [Bacillus cereus ATCC 14579] gi|30264992|ref|NP_847369.1| NifU domain-containing protein [Bacillus anthracis str. Ames] gi|42784132|ref|NP_981379.1| NifU domain-containing protein [Bacillus cereus ATCC 10987] gi|47530492|ref|YP_021841.1| NifU domain-containing protein [Bacillus anthracis str. 'Ames Ancestor'] gi|47566983|ref|ZP_00237700.1| NifU protein-related protein [Bacillus cereus G9241] gi|49187811|ref|YP_031064.1| NifU domain-containing protein [Bacillus anthracis str. Sterne] gi|49481022|ref|YP_038969.1| NifU domain-containing protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140580|ref|YP_086250.1| NifU domain-containing protein [Bacillus cereus E33L] gi|75758910|ref|ZP_00739021.1| NifU protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118480036|ref|YP_897187.1| NifU-like domain-containing protein [Bacillus thuringiensis str. Al Hakam] gi|163942665|ref|YP_001647549.1| NifU domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|165870953|ref|ZP_02215605.1| nifU domain protein [Bacillus anthracis str. A0488] gi|167634861|ref|ZP_02393179.1| nifU domain protein [Bacillus anthracis str. A0442] gi|167639907|ref|ZP_02398175.1| nifU domain protein [Bacillus anthracis str. A0193] gi|170685656|ref|ZP_02876879.1| nifU domain protein [Bacillus anthracis str. A0465] gi|170706993|ref|ZP_02897450.1| nifU domain protein [Bacillus anthracis str. A0389] gi|177652329|ref|ZP_02934832.1| nifU domain protein [Bacillus anthracis str. A0174] gi|190567150|ref|ZP_03020065.1| nifU domain protein [Bacillus anthracis Tsiankovskii-I] gi|196033148|ref|ZP_03100561.1| nifU domain protein [Bacillus cereus W] gi|196040592|ref|ZP_03107892.1| nifU domain protein [Bacillus cereus NVH0597-99] gi|196043939|ref|ZP_03111176.1| nifU domain protein [Bacillus cereus 03BB108] gi|206970391|ref|ZP_03231344.1| nifU domain protein [Bacillus cereus AH1134] gi|206976476|ref|ZP_03237383.1| nifU domain protein [Bacillus cereus H3081.97] gi|217962417|ref|YP_002340989.1| nifU domain protein [Bacillus cereus AH187] gi|218235090|ref|YP_002369752.1| nifU domain protein [Bacillus cereus B4264] gi|218900105|ref|YP_002448516.1| nifU domain protein [Bacillus cereus G9842] gi|218906144|ref|YP_002453978.1| nifU domain protein [Bacillus cereus AH820] gi|222098402|ref|YP_002532460.1| nitrogen-fixing nifu domain protein [Bacillus cereus Q1] gi|225866921|ref|YP_002752299.1| nifU domain protein [Bacillus cereus 03BB102] gi|227817723|ref|YP_002817732.1| nifU domain protein [Bacillus anthracis str. CDC 684] gi|228903455|ref|ZP_04067581.1| hypothetical protein bthur0014_46170 [Bacillus thuringiensis IBL 4222] gi|228910790|ref|ZP_04074599.1| hypothetical protein bthur0013_49320 [Bacillus thuringiensis IBL 200] gi|228917578|ref|ZP_04081122.1| hypothetical protein bthur0012_47840 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228923687|ref|ZP_04086965.1| hypothetical protein bthur0011_46620 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228929976|ref|ZP_04092987.1| hypothetical protein bthur0010_46580 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936248|ref|ZP_04099047.1| hypothetical protein bthur0009_46860 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228942118|ref|ZP_04104658.1| hypothetical protein bthur0008_47490 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228948675|ref|ZP_04110953.1| hypothetical protein bthur0007_47990 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228955216|ref|ZP_04117224.1| hypothetical protein bthur0006_45740 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961200|ref|ZP_04122821.1| hypothetical protein bthur0005_46480 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228968061|ref|ZP_04129067.1| hypothetical protein bthur0004_48450 [Bacillus thuringiensis serovar sotto str. T04001] gi|228975048|ref|ZP_04135607.1| hypothetical protein bthur0003_47960 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981687|ref|ZP_04141982.1| hypothetical protein bthur0002_48460 [Bacillus thuringiensis Bt407] gi|228988194|ref|ZP_04148291.1| hypothetical protein bthur0001_48520 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229014137|ref|ZP_04171258.1| hypothetical protein bmyco0001_45420 [Bacillus mycoides DSM 2048] gi|229020189|ref|ZP_04176962.1| hypothetical protein bcere0030_46810 [Bacillus cereus AH1273] gi|229026415|ref|ZP_04182772.1| hypothetical protein bcere0029_46920 [Bacillus cereus AH1272] gi|229049643|ref|ZP_04194200.1| hypothetical protein bcere0027_46010 [Bacillus cereus AH676] gi|229062619|ref|ZP_04199928.1| hypothetical protein bcere0026_46850 [Bacillus cereus AH603] gi|229072441|ref|ZP_04205643.1| hypothetical protein bcere0025_46020 [Bacillus cereus F65185] gi|229076327|ref|ZP_04209292.1| hypothetical protein bcere0024_46310 [Bacillus cereus Rock4-18] gi|229082198|ref|ZP_04214662.1| hypothetical protein bcere0023_48160 [Bacillus cereus Rock4-2] gi|229094055|ref|ZP_04225139.1| hypothetical protein bcere0021_47700 [Bacillus cereus Rock3-42] gi|229099409|ref|ZP_04230339.1| hypothetical protein bcere0020_46280 [Bacillus cereus Rock3-29] gi|229105568|ref|ZP_04236202.1| hypothetical protein bcere0019_46970 [Bacillus cereus Rock3-28] gi|229112395|ref|ZP_04241933.1| hypothetical protein bcere0018_46350 [Bacillus cereus Rock1-15] gi|229118422|ref|ZP_04247776.1| hypothetical protein bcere0017_46890 [Bacillus cereus Rock1-3] gi|229124488|ref|ZP_04253673.1| hypothetical protein bcere0016_47720 [Bacillus cereus 95/8201] gi|229130213|ref|ZP_04259172.1| hypothetical protein bcere0015_46490 [Bacillus cereus BDRD-Cer4] gi|229141670|ref|ZP_04270200.1| hypothetical protein bcere0013_47600 [Bacillus cereus BDRD-ST26] gi|229147497|ref|ZP_04275844.1| hypothetical protein bcere0012_46260 [Bacillus cereus BDRD-ST24] gi|229153141|ref|ZP_04281320.1| hypothetical protein bcere0011_46710 [Bacillus cereus m1550] gi|229158547|ref|ZP_04286606.1| hypothetical protein bcere0010_47200 [Bacillus cereus ATCC 4342] gi|229163931|ref|ZP_04291871.1| hypothetical protein bcere0009_46940 [Bacillus cereus R309803] gi|229169674|ref|ZP_04297374.1| hypothetical protein bcere0007_46180 [Bacillus cereus AH621] gi|229175651|ref|ZP_04303159.1| hypothetical protein bcere0006_47280 [Bacillus cereus MM3] gi|229181250|ref|ZP_04308580.1| hypothetical protein bcere0005_45920 [Bacillus cereus 172560W] gi|229187187|ref|ZP_04314332.1| hypothetical protein bcere0004_47230 [Bacillus cereus BGSC 6E1] gi|229193231|ref|ZP_04320182.1| hypothetical protein bcere0002_48780 [Bacillus cereus ATCC 10876] gi|229199099|ref|ZP_04325782.1| hypothetical protein bcere0001_46120 [Bacillus cereus m1293] gi|229604077|ref|YP_002869195.1| nifU domain protein [Bacillus anthracis str. A0248] gi|254687285|ref|ZP_05151142.1| nifU domain protein [Bacillus anthracis str. CNEVA-9066] gi|254725297|ref|ZP_05187080.1| nifU domain protein [Bacillus anthracis str. A1055] gi|254735378|ref|ZP_05193086.1| nifU domain protein [Bacillus anthracis str. Western North America USA6153] gi|254740645|ref|ZP_05198336.1| nifU domain protein [Bacillus anthracis str. Kruger B] gi|254753093|ref|ZP_05205129.1| nifU domain protein [Bacillus anthracis str. Vollum] gi|254761435|ref|ZP_05213456.1| nifU domain protein [Bacillus anthracis str. Australia 94] gi|296505392|ref|YP_003667092.1| NifU protein [Bacillus thuringiensis BMB171] gi|301056437|ref|YP_003794648.1| nitrogen-fixing NifU domain-containing protein [Bacillus anthracis CI] gi|29898552|gb|AAP11824.1| NifU protein [Bacillus cereus ATCC 14579] gi|30259669|gb|AAP28855.1| nifU domain protein [Bacillus anthracis str. Ames] gi|42740063|gb|AAS43987.1| nifU domain protein [Bacillus cereus ATCC 10987] gi|47505640|gb|AAT34316.1| nifU domain protein [Bacillus anthracis str. 'Ames Ancestor'] gi|47556301|gb|EAL14635.1| NifU protein-related protein [Bacillus cereus G9241] gi|49181738|gb|AAT57114.1| nifU domain protein [Bacillus anthracis str. Sterne] gi|49332578|gb|AAT63224.1| nitrogen-fixing NifU domain protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974049|gb|AAU15599.1| nitrogen-fixing NifU domain protein [Bacillus cereus E33L] gi|74493584|gb|EAO56689.1| NifU protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118419261|gb|ABK87680.1| NifU-like domain protein [Bacillus thuringiensis str. Al Hakam] gi|163864862|gb|ABY45921.1| nitrogen-fixing NifU domain protein [Bacillus weihenstephanensis KBAB4] gi|164713462|gb|EDR18987.1| nifU domain protein [Bacillus anthracis str. A0488] gi|167511988|gb|EDR87366.1| nifU domain protein [Bacillus anthracis str. A0193] gi|167529611|gb|EDR92360.1| nifU domain protein [Bacillus anthracis str. A0442] gi|170128096|gb|EDS96966.1| nifU domain protein [Bacillus anthracis str. A0389] gi|170670120|gb|EDT20860.1| nifU domain protein [Bacillus anthracis str. A0465] gi|172082335|gb|EDT67401.1| nifU domain protein [Bacillus anthracis str. A0174] gi|190561654|gb|EDV15624.1| nifU domain protein [Bacillus anthracis Tsiankovskii-I] gi|195994577|gb|EDX58532.1| nifU domain protein [Bacillus cereus W] gi|196025275|gb|EDX63945.1| nifU domain protein [Bacillus cereus 03BB108] gi|196028724|gb|EDX67331.1| nifU domain protein [Bacillus cereus NVH0597-99] gi|206734968|gb|EDZ52137.1| nifU domain protein [Bacillus cereus AH1134] gi|206745400|gb|EDZ56800.1| nifU domain protein [Bacillus cereus H3081.97] gi|217063374|gb|ACJ77624.1| nifU domain protein [Bacillus cereus AH187] gi|218163047|gb|ACK63039.1| nifU domain protein [Bacillus cereus B4264] gi|218538404|gb|ACK90802.1| nifU domain protein [Bacillus cereus AH820] gi|218541315|gb|ACK93709.1| nifU domain protein [Bacillus cereus G9842] gi|221242461|gb|ACM15171.1| nitrogen-fixing NifU domain protein [Bacillus cereus Q1] gi|225790034|gb|ACO30251.1| nifU domain protein [Bacillus cereus 03BB102] gi|227002453|gb|ACP12196.1| nifU domain protein [Bacillus anthracis str. CDC 684] gi|228584370|gb|EEK42505.1| hypothetical protein bcere0001_46120 [Bacillus cereus m1293] gi|228590208|gb|EEK48076.1| hypothetical protein bcere0002_48780 [Bacillus cereus ATCC 10876] gi|228596197|gb|EEK53872.1| hypothetical protein bcere0004_47230 [Bacillus cereus BGSC 6E1] gi|228602143|gb|EEK59634.1| hypothetical protein bcere0005_45920 [Bacillus cereus 172560W] gi|228607792|gb|EEK65106.1| hypothetical protein bcere0006_47280 [Bacillus cereus MM3] gi|228613713|gb|EEK70838.1| hypothetical protein bcere0007_46180 [Bacillus cereus AH621] gi|228619552|gb|EEK76438.1| hypothetical protein bcere0009_46940 [Bacillus cereus R309803] gi|228624861|gb|EEK81629.1| hypothetical protein bcere0010_47200 [Bacillus cereus ATCC 4342] gi|228630240|gb|EEK86890.1| hypothetical protein bcere0011_46710 [Bacillus cereus m1550] gi|228635923|gb|EEK92406.1| hypothetical protein bcere0012_46260 [Bacillus cereus BDRD-ST24] gi|228641738|gb|EEK98039.1| hypothetical protein bcere0013_47600 [Bacillus cereus BDRD-ST26] gi|228653146|gb|EEL09025.1| hypothetical protein bcere0015_46490 [Bacillus cereus BDRD-Cer4] gi|228658828|gb|EEL14483.1| hypothetical protein bcere0016_47720 [Bacillus cereus 95/8201] gi|228664992|gb|EEL20480.1| hypothetical protein bcere0017_46890 [Bacillus cereus Rock1-3] gi|228671043|gb|EEL26349.1| hypothetical protein bcere0018_46350 [Bacillus cereus Rock1-15] gi|228677838|gb|EEL32081.1| hypothetical protein bcere0019_46970 [Bacillus cereus Rock3-28] gi|228684033|gb|EEL37981.1| hypothetical protein bcere0020_46280 [Bacillus cereus Rock3-29] gi|228689267|gb|EEL43086.1| hypothetical protein bcere0021_47700 [Bacillus cereus Rock3-42] gi|228701116|gb|EEL53638.1| hypothetical protein bcere0023_48160 [Bacillus cereus Rock4-2] gi|228706762|gb|EEL58970.1| hypothetical protein bcere0024_46310 [Bacillus cereus Rock4-18] gi|228710417|gb|EEL62390.1| hypothetical protein bcere0025_46020 [Bacillus cereus F65185] gi|228716589|gb|EEL68286.1| hypothetical protein bcere0026_46850 [Bacillus cereus AH603] gi|228722556|gb|EEL73944.1| hypothetical protein bcere0027_46010 [Bacillus cereus AH676] gi|228734878|gb|EEL85516.1| hypothetical protein bcere0029_46920 [Bacillus cereus AH1272] gi|228741085|gb|EEL91310.1| hypothetical protein bcere0030_46810 [Bacillus cereus AH1273] gi|228747091|gb|EEL96973.1| hypothetical protein bmyco0001_45420 [Bacillus mycoides DSM 2048] gi|228771491|gb|EEM19960.1| hypothetical protein bthur0001_48520 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228777799|gb|EEM26071.1| hypothetical protein bthur0002_48460 [Bacillus thuringiensis Bt407] gi|228784569|gb|EEM32589.1| hypothetical protein bthur0003_47960 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228791616|gb|EEM39212.1| hypothetical protein bthur0004_48450 [Bacillus thuringiensis serovar sotto str. T04001] gi|228798494|gb|EEM45486.1| hypothetical protein bthur0005_46480 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804349|gb|EEM50960.1| hypothetical protein bthur0006_45740 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228810982|gb|EEM57325.1| hypothetical protein bthur0007_47990 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228817452|gb|EEM63537.1| hypothetical protein bthur0008_47490 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228823364|gb|EEM69197.1| hypothetical protein bthur0009_46860 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829656|gb|EEM75282.1| hypothetical protein bthur0010_46580 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228835816|gb|EEM81179.1| hypothetical protein bthur0011_46620 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228842058|gb|EEM87161.1| hypothetical protein bthur0012_47840 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228848741|gb|EEM93586.1| hypothetical protein bthur0013_49320 [Bacillus thuringiensis IBL 200] gi|228856185|gb|EEN00719.1| hypothetical protein bthur0014_46170 [Bacillus thuringiensis IBL 4222] gi|229268485|gb|ACQ50122.1| nifU domain protein [Bacillus anthracis str. A0248] gi|296326444|gb|ADH09372.1| NifU protein [Bacillus thuringiensis BMB171] gi|300378606|gb|ADK07510.1| nitrogen-fixing NifU domain protein [Bacillus cereus biovar anthracis str. CI] gi|324328882|gb|ADY24142.1| nitrogen-fixing NifU domain-containing protein [Bacillus thuringiensis serovar finitimus YBT-020] gi|326942769|gb|AEA18665.1| NifU protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 78 Score = 107 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + + +++ EVLD ++RP + RDGGD+ +GIV L + GAC CPS++ TLK G+ Sbjct: 2 ENPHMQEQVLEVLD-KLRPFLLRDGGDVELVDIEEGIVKLRLMGACGSCPSSTITLKAGI 60 Query: 173 ANILNHFVPEVKDIRTV 189 L VP V ++ V Sbjct: 61 ERALLEEVPGVIEVEQV 77 >gi|116781227|gb|ABK22014.1| unknown [Picea sitchensis] Length = 238 Score = 107 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 1/97 (1%) Query: 93 HNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFL 152 G ++ + + + V+ I+ +LD VRP + DGG++ +V L Sbjct: 65 SRQTRGKHVIEAIATPPTTGGLALTVENIEMILDE-VRPYLMADGGNVELHEIDGNVVTL 123 Query: 153 SMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 ++GAC CPS+ T+K G+ L +PE+ ++ V Sbjct: 124 KLQGACGSCPSSMTTMKTGIEGRLMEKIPEIIAVKQV 160 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 7/79 (8%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGG-DIVFKGYRDGIVFLSMRGACSGCPSAS-ETL 168 +E+ + + E + +RP ++ GG D+ F D +V + + G P+A T+ Sbjct: 163 METGLELTEENVEKILAEIRPYLSGTGGGDLEFVKIDDPVVKVRISG-----PAAEVMTV 217 Query: 169 KYGVANILNHFVPEVKDIR 187 + + L +P + ++ Sbjct: 218 RVALTQKLREKIPAIAAVQ 236 >gi|87125583|ref|ZP_01081428.1| NifU-like protein [Synechococcus sp. RS9917] gi|86166883|gb|EAQ68145.1| NifU-like protein [Synechococcus sp. RS9917] Length = 81 Score = 107 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + +++VLD +RP + DGG++ +V + ++GAC CPS++ TLK G Sbjct: 4 ETLPLSSENVEKVLDE-LRPFLMADGGNVEVVEIDGPVVKVRLQGACGSCPSSTMTLKMG 62 Query: 172 VANILNHFVPEVKDIRTV 189 + L +PEV ++ V Sbjct: 63 IERKLREMIPEVSEVVQV 80 >gi|113972131|ref|YP_735924.1| putative DNA uptake protein [Shewanella sp. MR-4] gi|117922434|ref|YP_871626.1| putative DNA uptake protein [Shewanella sp. ANA-3] gi|119370615|sp|Q0HDK0|NFUA_SHESM RecName: Full=Fe/S biogenesis protein nfuA gi|150383449|sp|A0L2F1|NFUA_SHESA RecName: Full=Fe/S biogenesis protein nfuA gi|113886815|gb|ABI40867.1| HesB/YadR/YfhF-family protein [Shewanella sp. MR-4] gi|117614766|gb|ABK50220.1| HesB/YadR/YfhF-family protein [Shewanella sp. ANA-3] Length = 192 Score = 107 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 68/182 (37%), Gaps = 16/182 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F I PG A G + D + + + G Sbjct: 3 TISDAAQAHFVKLLADQPEGTHIRVFVISPGTAQAECGVSYCPP--DAVESDDIELEFNG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 P + + D D +GS + SD+ + +R++ V+ + + Sbjct: 61 FSAMVDEKSAPFLEEASI-DFVTDQLGSQLTLKAPNAKMRKVASDAPLAERVEYVIQSEI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIR 187 P +A GG+I+ ++G+ L G C+GC TLK G+ L P E+ + Sbjct: 120 NPQLASHGGNIMLVEITQEGVAVLQFGGGCNGCSQVDITLKDGIEKQLLDMFPGELSGVS 179 Query: 188 TV 189 V Sbjct: 180 DV 181 >gi|119493943|ref|ZP_01624504.1| putative NifU-like protein [Lyngbya sp. PCC 8106] gi|119452300|gb|EAW33495.1| putative NifU-like protein [Lyngbya sp. PCC 8106] Length = 79 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + + ++ VLD +RP + DGG++ IV L ++GAC CPS++ TLK G+ Sbjct: 3 DLALTPENVETVLDE-LRPYLMADGGNVEIVELDGPIVRLRLQGACGSCPSSTMTLKMGI 61 Query: 173 ANILNHFVPEVKDIRTV 189 L +PE+ ++ V Sbjct: 62 ERRLREKIPEIAEVVAV 78 >gi|332289242|ref|YP_004420094.1| putative DNA uptake protein [Gallibacterium anatis UMN179] gi|330432138|gb|AEC17197.1| putative DNA uptake protein [Gallibacterium anatis UMN179] Length = 194 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 68/175 (38%), Gaps = 16/175 (9%) Query: 28 IHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFI 86 HF + + RIF + PG + G + + ++ ++ Sbjct: 12 AHFRKLLDQQEEGTNIRIFVVNPGTPNAECGVSYCPKSAVEATDHEMKYETFSAFVDELS 71 Query: 87 SGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVRPAVARD 136 P + + + D D+MGS + D+ +++R++ V+ ++ P +A Sbjct: 72 --LPFLEDAEI-DFVTDEMGSQLTLKAPNAKMRKVADDAPLIERVEYVIQTQINPQLANH 128 Query: 137 GGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIRTV 189 GG I D G L G C+GC TLK GV +L F E+ ++ V Sbjct: 129 GGRITLIEITDKGEAILQFGGGCNGCSMVDVTLKDGVEKQLLAQFEGELTGVKDV 183 >gi|229032593|ref|ZP_04188558.1| hypothetical protein bcere0028_46300 [Bacillus cereus AH1271] gi|229135778|ref|ZP_04264548.1| hypothetical protein bcere0014_46610 [Bacillus cereus BDRD-ST196] gi|228647644|gb|EEL03709.1| hypothetical protein bcere0014_46610 [Bacillus cereus BDRD-ST196] gi|228728778|gb|EEL79789.1| hypothetical protein bcere0028_46300 [Bacillus cereus AH1271] Length = 78 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + + +++ EVLD ++RP + RDGGD+ +GIV L + GAC CPS++ TLK G+ Sbjct: 2 ENPHMEEQVLEVLD-KLRPFLLRDGGDVELVDIEEGIVKLRLMGACGSCPSSTITLKAGI 60 Query: 173 ANILNHFVPEVKDIRTV 189 L VP V ++ V Sbjct: 61 ERALLEEVPGVIEVEQV 77 >gi|312882897|ref|ZP_07742629.1| putative DNA uptake protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309369416|gb|EFP96936.1| putative DNA uptake protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 195 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 65/177 (36%), Gaps = 10/177 (5%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRP-PVLG 79 + HF+N + R+F + PG + G + + L+ Sbjct: 7 ITETAQKHFANLLSQQSEGTHIRVFVVNPGTQNAECGVSYCPPEAVESTDTELKFADFSA 66 Query: 80 MIME----HFISGDPIIHNGGLGDMKLDDMGSGDFIE--SDSAVVQRIKEVLDNRVRPAV 133 I E + +G + + D+ +++R++ + +V P + Sbjct: 67 FIDELSLPFLEDAEIDFVTDKMGSQLTLKAPNAKMRKVNDDAPLIERVEYAIQTQVNPQL 126 Query: 134 ARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIRT 188 A GG++ +G+ ++ G C+GC TLK G+ +L F E+ +R Sbjct: 127 ASHGGNVNLIEITEEGVAIVAFGGGCNGCSMVDVTLKEGIEKELLQQFEGELTAVRD 183 >gi|308047919|ref|YP_003911485.1| IscR-regulated protein YhgI [Ferrimonas balearica DSM 9799] gi|307630109|gb|ADN74411.1| IscR-regulated protein YhgI [Ferrimonas balearica DSM 9799] Length = 192 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 69/182 (37%), Gaps = 16/182 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ ++ R+F I PG G + D + + + P G Sbjct: 3 TITEAAQAHFAKLLSSQPEGTNIRVFVINPGTPQAECGVSYCPP--DAVEADDIELPFEG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 P + + + D D +GS + D+ + R++ V+ ++V Sbjct: 61 FNAMVDEKSAPFLDDALI-DYVTDQLGSQLTLKAPNAKMRKVADDAPLRDRVEYVIQSQV 119 Query: 130 RPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIR 187 P +A GG I DGI + G C+GC TLK G+ +L F E+ ++ Sbjct: 120 NPQLAGHGGFITLMELTDDGIAVIQFGGGCNGCSMVDVTLKDGIEKQLLEEFSGELTAVK 179 Query: 188 TV 189 V Sbjct: 180 DV 181 >gi|119511776|ref|ZP_01630878.1| Nitrogen-fixing NifU-like protein [Nodularia spumigena CCY9414] gi|119463549|gb|EAW44484.1| Nitrogen-fixing NifU-like protein [Nodularia spumigena CCY9414] Length = 76 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + ++ VLD +RP + DGG++ IV L ++GAC CPS++ TL+ G+ Sbjct: 2 ELTTENVETVLDE-MRPYLMSDGGNVELVELDGPIVKLRLQGACGSCPSSAMTLRMGIER 60 Query: 175 ILNHFVPEVKDIRTV 189 L +PE+ +I V Sbjct: 61 RLKEMIPEIAEIEQV 75 >gi|116072270|ref|ZP_01469537.1| NifU-like protein [Synechococcus sp. BL107] gi|116064792|gb|EAU70551.1| NifU-like protein [Synechococcus sp. BL107] Length = 81 Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + ++ ++ VLD +RP + DGG++ IV + ++GAC CPS++ TLK G Sbjct: 4 ETKALTLENVETVLDE-LRPFLMADGGNVEVVEIDGPIVKVRLQGACGSCPSSTMTLKMG 62 Query: 172 VANILNHFVPEVKDIRTV 189 + + +PEV ++ V Sbjct: 63 IERKMRESIPEVSEVVQV 80 >gi|323494586|ref|ZP_08099690.1| Fe/S biogenesis protein NfuA [Vibrio brasiliensis LMG 20546] gi|323311189|gb|EGA64349.1| Fe/S biogenesis protein NfuA [Vibrio brasiliensis LMG 20546] Length = 195 Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 69/181 (38%), Gaps = 16/181 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+N + R+F + PG + G + + L Sbjct: 6 TITETAQKHFANLLGQQPDGTNIRVFVVNPGTQNAECGVSYCPPEAVEATDTELAFESFS 65 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ P + + + D D MGS + D+ +V+R++ V+ +V Sbjct: 66 AYVDELS--LPFLEDAEI-DFVTDKMGSQLTLKAPNAKMRKVSDDAPLVERVEYVIQTQV 122 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIR 187 P +A GG + +G+ ++ G C+GC TLK G+ +L F E+ +R Sbjct: 123 NPQLAGHGGHVNLVEITEEGVAIVAFGGGCNGCSMVDVTLKEGIEKELLQQFEGELSAVR 182 Query: 188 T 188 Sbjct: 183 D 183 >gi|228993673|ref|ZP_04153580.1| hypothetical protein bpmyx0001_43990 [Bacillus pseudomycoides DSM 12442] gi|228999709|ref|ZP_04159285.1| hypothetical protein bmyco0003_42630 [Bacillus mycoides Rock3-17] gi|229007266|ref|ZP_04164867.1| hypothetical protein bmyco0002_41480 [Bacillus mycoides Rock1-4] gi|229087461|ref|ZP_04219595.1| hypothetical protein bcere0022_40270 [Bacillus cereus Rock3-44] gi|228695883|gb|EEL48734.1| hypothetical protein bcere0022_40270 [Bacillus cereus Rock3-44] gi|228754020|gb|EEM03457.1| hypothetical protein bmyco0002_41480 [Bacillus mycoides Rock1-4] gi|228760071|gb|EEM09041.1| hypothetical protein bmyco0003_42630 [Bacillus mycoides Rock3-17] gi|228766102|gb|EEM14749.1| hypothetical protein bpmyx0001_43990 [Bacillus pseudomycoides DSM 12442] Length = 78 Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + + +++ EVLD ++RP + RDGGD+ +GIV L + GAC CPS++ TLK G+ Sbjct: 2 ENPNMQEQVLEVLD-KLRPFLLRDGGDVELVDIEEGIVKLRLMGACGSCPSSTITLKAGI 60 Query: 173 ANILNHFVPEVKDIRTV 189 L VP V ++ V Sbjct: 61 ERALLEEVPGVIEVEQV 77 >gi|229916513|ref|YP_002885159.1| nitrogen-fixing NifU domain protein [Exiguobacterium sp. AT1b] gi|229467942|gb|ACQ69714.1| nitrogen-fixing NifU domain protein [Exiguobacterium sp. AT1b] Length = 75 Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 + +++EVLD ++RP + RDGGD+ +GIV L + GAC CPS++ TLK G+ Sbjct: 2 EMFDQVQEVLD-KLRPFLLRDGGDVELVDVEEGIVKLRLMGACGSCPSSTITLKAGIERA 60 Query: 176 LNHFVPEVKDIRTV 189 L VP + ++ V Sbjct: 61 LIEEVPGIVEVEQV 74 >gi|225446006|ref|XP_002268218.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297735420|emb|CBI17860.3| unnamed protein product [Vitis vinifera] Length = 237 Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + +++VLD VRP + DGG++ +V L ++GAC CPS++ TLK G+ L Sbjct: 86 TEENVEKVLDE-VRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRL 144 Query: 177 NHFVPEVKDIRTV 189 +PE++ + + Sbjct: 145 RDKIPEIEAVEQI 157 Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 37/91 (40%), Gaps = 5/91 (5%) Query: 100 MKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGAC 158 +++ + E+ + + E + +RP +A GG + D ++ + + G Sbjct: 149 PEIEAVEQILDTETGLELNEENVEKVLAEIRPYLAGTGGGVLELVQINDYVIKVRLSGPA 208 Query: 159 SGCPSASETLKYGVANILNHFVPEVKDIRTV 189 +G T++ + L +P + ++ + Sbjct: 209 AG----VMTVRVALTQKLREKIPAIAAVQLI 235 >gi|33866219|ref|NP_897778.1| NifU-like protein [Synechococcus sp. WH 8102] gi|78212340|ref|YP_381119.1| NifU-like protein [Synechococcus sp. CC9605] gi|33639194|emb|CAE08202.1| NifU-like protein [Synechococcus sp. WH 8102] gi|78196799|gb|ABB34564.1| NifU-like protein [Synechococcus sp. CC9605] Length = 81 Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + ++ +++VLD +RP + DGG++ IV + ++GAC CPS++ TLK G Sbjct: 4 ETMALTLENVEKVLDE-LRPFLMADGGNVEVVELDGPIVKVRLQGACGSCPSSTMTLKMG 62 Query: 172 VANILNHFVPEVKDIRTV 189 + + +PEV ++ V Sbjct: 63 IERKMRESIPEVSEVVQV 80 >gi|186681985|ref|YP_001865181.1| NifU domain-containing protein [Nostoc punctiforme PCC 73102] gi|186464437|gb|ACC80238.1| nitrogen-fixing NifU domain protein [Nostoc punctiforme PCC 73102] Length = 76 Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + ++ VLD +RP + DGG++ +V L ++GAC CPS++ TL+ G+ Sbjct: 2 ELTIDNVETVLDE-MRPYLMSDGGNVELVELDGPVVKLRLQGACGSCPSSAMTLRMGIER 60 Query: 175 ILNHFVPEVKDIRTV 189 L +PE+ +I V Sbjct: 61 RLKEMIPEIAEIEQV 75 >gi|237807285|ref|YP_002891725.1| putative DNA uptake protein [Tolumonas auensis DSM 9187] gi|259511747|sp|C4LA10|NFUA_TOLAT RecName: Full=Fe/S biogenesis protein nfuA gi|237499546|gb|ACQ92139.1| IscR-regulated protein YhgI [Tolumonas auensis DSM 9187] Length = 192 Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 67/174 (38%), Gaps = 15/174 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF E + R+F + PG + G + D + E R P G Sbjct: 3 TISESAQAHFRKLLEKQAENTNIRVFVMNPGTPNAECGVSYCPP--DAVEPEDSRQPFDG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 + P + + D D MGS ++ ++++ +R++ VL ++V Sbjct: 61 FDAIIDPNSAPFLEEAAI-DFISDQMGSQLTLKAPNAKMRKVDDNASLAERVEYVLQSQV 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 P++A GG + DG+ L G C+GC TLK G+ L P Sbjct: 120 NPSLAAHGGRVTLTEITDDGVAILQFGGGCNGCSMVDVTLKEGIEKQLLELFPG 173 >gi|152012745|gb|AAI50438.1| Hirip5 protein [Danio rerio] Length = 157 Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 6/106 (5%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKE---AEISPLASRIFSIPGIASVYFG 57 MFIQT+DTPNP +LKF+PG+ VL G + F+ ++ A+ +P + I + Sbjct: 51 MFIQTQDTPNPNSLKFLPGRAVLDSGTMDFAGPRDAPRADTAPSEDDDEVVAMIKELLDT 110 Query: 58 YDFITVGKD---QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDM 100 TV +D + +W+ ++P V IM+ F SG P+++ Sbjct: 111 RIRPTVQEDGSGETEWKVIKPDVFATIMDFFTSGLPVVNEADAPSS 156 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 14/102 (13%) Query: 51 IASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGL--GDMKLDDMGSG 108 +V+ FI +D + L+ F+ G ++ +G + + Sbjct: 43 TTTVFIRNMFIQ-TQDTPNPNSLK----------FLPGRAVLDSGTMDFAGPRDAPRADT 91 Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDG-GDIVFKGYRDGI 149 E D VV IKE+LD R+RP V DG G+ +K + + Sbjct: 92 APSEDDDEVVAMIKELLDTRIRPTVQEDGSGETEWKVIKPDV 133 >gi|78185152|ref|YP_377587.1| NifU-like protein [Synechococcus sp. CC9902] gi|78169446|gb|ABB26543.1| NifU-like protein [Synechococcus sp. CC9902] Length = 81 Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + + +++VLD +RP + DGG++ IV + ++GAC CPS++ TLK G Sbjct: 4 ETMALTLDNVEKVLDE-LRPFLMADGGNVEVVEIDGPIVKVRLQGACGSCPSSTMTLKMG 62 Query: 172 VANILNHFVPEVKDIRTV 189 + + +PEV ++ V Sbjct: 63 IERKMRESIPEVSEVVQV 80 >gi|282900620|ref|ZP_06308562.1| Nitrogen-fixing NifU-like protein [Cylindrospermopsis raciborskii CS-505] gi|281194420|gb|EFA69375.1| Nitrogen-fixing NifU-like protein [Cylindrospermopsis raciborskii CS-505] Length = 76 Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 ++ ++ VLD +RP + DGG++ IV L ++GAC CPS++ TL+ G+ Sbjct: 2 ELTLENVETVLDE-MRPYLISDGGNVEVVELDGPIVKLRLQGACGSCPSSTMTLRMGIER 60 Query: 175 ILNHFVPEVKDIRTV 189 L +PE+ ++ V Sbjct: 61 RLKEMIPEIGEVEQV 75 >gi|18423084|ref|NP_568715.1| NFU2 (NIFU-LIKE PROTEIN 2); structural molecule [Arabidopsis thaliana] gi|75163219|sp|Q93W20|NIFU2_ARATH RecName: Full=NifU-like protein 2, chloroplastic; Short=AtCNfu2; Short=AtCnfU-V; Flags: Precursor gi|13878181|gb|AAK44168.1|AF370353_1 unknown protein [Arabidopsis thaliana] gi|16226434|gb|AAL16167.1|AF428399_1 AT5g49940/K9P8_8 [Arabidopsis thaliana] gi|17104539|gb|AAL34158.1| unknown protein [Arabidopsis thaliana] gi|26452324|dbj|BAC43248.1| unknown protein [Arabidopsis thaliana] gi|28207818|emb|CAD55559.1| NFU2 protein [Arabidopsis thaliana] gi|332008490|gb|AED95873.1| NifU-like protein 2 [Arabidopsis thaliana] Length = 235 Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ VLD +RP + DGG++ IV + ++GAC CPS++ T+K G+ L Sbjct: 86 TEENVESVLDE-IRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRL 144 Query: 177 NHFVPEVKDIRT 188 +PE+ + Sbjct: 145 MEKIPEIVAVEA 156 Score = 40.9 bits (95), Expect = 0.073, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 6/72 (8%) Query: 119 QRIKEVLDNRVRPAVARDG-GDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + I++VL+ +RP + G + D IV + + G +G T++ V L Sbjct: 169 ENIEKVLEE-IRPYLIGTADGSLDLVEIEDPIVKIRITGPAAG----VMTVRVAVTQKLR 223 Query: 178 HFVPEVKDIRTV 189 +P + ++ + Sbjct: 224 EKIPSIAAVQLI 235 >gi|123965714|ref|YP_001010795.1| NifU-like protein [Prochlorococcus marinus str. MIT 9515] gi|123200080|gb|ABM71688.1| NifU-like protein [Prochlorococcus marinus str. MIT 9515] Length = 81 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + +++VLD +RP + DGG++ IV + ++GAC CPS++ TLK G Sbjct: 4 ETLPLTNENVEKVLDE-LRPFLISDGGNVEIAEIDGPIVKVRLQGACGSCPSSTMTLKMG 62 Query: 172 VANILNHFVPEVKDIRTV 189 + L +PE+ ++ V Sbjct: 63 IERKLKEMIPEISEVVQV 80 >gi|90655381|gb|ABD96222.1| NifU-like protein [uncultured marine type-A Synechococcus GOM 3M9] Length = 81 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + + +++VLD +RP + DGG++ IV + ++GAC CPS++ TLK G Sbjct: 4 ETMALTHENVEKVLDE-LRPFLMADGGNVEVVELDGPIVKVRLQGACGSCPSSTMTLKMG 62 Query: 172 VANILNHFVPEVKDIRTV 189 + + +PEV ++ V Sbjct: 63 IERKMREAIPEVSEVVQV 80 >gi|56751077|ref|YP_171778.1| putative NifU-like protein [Synechococcus elongatus PCC 6301] gi|81299261|ref|YP_399469.1| putative NifU-like protein [Synechococcus elongatus PCC 7942] gi|24414813|emb|CAD55626.1| putative NifU-like protein [Synechococcus elongatus PCC 7942] gi|56686036|dbj|BAD79258.1| putative NifU-like protein [Synechococcus elongatus PCC 6301] gi|81168142|gb|ABB56482.1| putative NifU-like protein [Synechococcus elongatus PCC 7942] Length = 81 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + + ++ VLD +RP + DGG++ IV L + GAC CPS++ TL+ G Sbjct: 4 ETLALTPENVETVLDE-LRPYLIADGGNVELVELDGPIVKLRLNGACGSCPSSTMTLRMG 62 Query: 172 VANILNHFVPEVKDIRTV 189 + L +PE+ ++ V Sbjct: 63 IERKLRESIPEISEVEQV 80 >gi|86608468|ref|YP_477230.1| NifU domain-containing protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557010|gb|ABD01967.1| NifU domain protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 80 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + +++VL N +RP + DGG++ +V L ++GAC CPS++ TLK G+ L Sbjct: 9 TENVEKVL-NELRPYLMADGGNVELVEIDGPVVKLRLQGACGACPSSTMTLKMGIERKLR 67 Query: 178 HFVPEVKDIRTV 189 +P++ ++ V Sbjct: 68 ESIPDILEVEQV 79 >gi|113461632|ref|YP_719701.1| putative DNA uptake protein [Haemophilus somnus 129PT] gi|170718659|ref|YP_001783854.1| DNA uptake protein [Haemophilus somnus 2336] gi|119370610|sp|Q0I5I6|NFUA_HAES1 RecName: Full=Fe/S biogenesis protein nfuA gi|189041725|sp|B0URV5|NFUA_HAES2 RecName: Full=Fe/S biogenesis protein nfuA gi|112823675|gb|ABI25764.1| conserved hypothetical protein [Haemophilus somnus 129PT] gi|168826788|gb|ACA32159.1| HesB/YadR/YfhF-family protein [Haemophilus somnus 2336] Length = 193 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 65/179 (36%), Gaps = 10/179 (5%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLR-PPVL 78 + HF + + RIF + PG + G + + ++ Sbjct: 4 TISEAAQAHFRRLLDQQEEGTNIRIFVVNPGSPNAECGVSYCPKNAVETTDHEIKYSEFS 63 Query: 79 GMIMEH---FISGDPI--IHNGGLGDMKLDDMGSGDFI-ESDSAVVQRIKEVLDNRVRPA 132 I E F+ I I + L + D+ +++R++ + ++ P Sbjct: 64 AFIDEVSFPFLEDAEIDYITEEMGSQLTLKAPNAKMRKVADDAPLIERVEYAIQTQINPQ 123 Query: 133 VARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIRTV 189 +A GG I +DG L G C+GC TLK G+ +L F E+ ++ V Sbjct: 124 LAGHGGHITLIEITKDGKAILQFGGGCNGCSMVDVTLKDGIEKQLLAMFADELTGVKDV 182 >gi|158334696|ref|YP_001515868.1| NifU domain-containing protein [Acaryochloris marina MBIC11017] gi|158304937|gb|ABW26554.1| NifU domain protein [Acaryochloris marina MBIC11017] Length = 80 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++ VLD +RP + DGG++ +V L ++GAC CPS++ TLK G+ L Sbjct: 10 ENVETVLDE-LRPYLMADGGNVELVEVEGPVVKLRLQGACGSCPSSAMTLKMGIERKLRD 68 Query: 179 FVPEVKDIRTV 189 +PE+ ++ V Sbjct: 69 TIPEIAEVEQV 79 >gi|167465184|ref|ZP_02330273.1| nitrogen-fixing NifU domain protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384547|ref|ZP_08058227.1| iron-sulfur scaffold-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150602|gb|EFX44079.1| iron-sulfur scaffold-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 82 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 DS + + EVLD ++RP + RDGGD+ DGIV L + GAC CPS++ TLK G+ Sbjct: 7 DSTMYDEVLEVLD-KLRPFLQRDGGDVELVDVEDGIVKLRLMGACGSCPSSTITLKAGIE 65 Query: 174 NILNHFVPEVKDIRTV 189 L V ++++ V Sbjct: 66 RALVEEVEGIQEVVQV 81 >gi|124360086|gb|ABN08102.1| Nitrogen-fixing NifU, C-terminal [Medicago truncatula] Length = 242 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + +++VLD VRP + DGG++ +V L ++GAC CPS++ TLK G+ L Sbjct: 92 TEENVEKVLDE-VRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRL 150 Query: 177 NHFVPEVKDIRTV 189 +PE+ ++ + Sbjct: 151 RDKIPEILEVEQI 163 Score = 43.2 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 5/91 (5%) Query: 100 MKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGAC 158 ++ ++ E+ + + E + + +RP + GG + D IV + + G Sbjct: 155 PEILEVEQILDTETGLELTEDNVESVLSEIRPYLIGTGGGTLELVEINDYIVKVRLSGPA 214 Query: 159 SGCPSASETLKYGVANILNHFVPEVKDIRTV 189 +G T++ + L +P + ++ + Sbjct: 215 AG----VMTVRVALTQKLRDKIPSIAAVQLI 241 >gi|113954347|ref|YP_729865.1| NifU domain-containing protein [Synechococcus sp. CC9311] gi|113881698|gb|ABI46656.1| NifU domain protein [Synechococcus sp. CC9311] Length = 81 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + + +++VLD +RP + DGG++ +V + ++GAC CPS++ TLK G Sbjct: 4 ETMALTNENVEKVLDE-LRPFLMADGGNVEVVEIDGPVVKVRLQGACGSCPSSTMTLKMG 62 Query: 172 VANILNHFVPEVKDIRTV 189 + + +PEV ++ V Sbjct: 63 IERKMRESIPEVSEVVQV 80 >gi|238897767|ref|YP_002923446.1| Fe/S biogenesis protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259511743|sp|C4K405|NFUA_HAMD5 RecName: Full=Fe/S biogenesis protein nfuA gi|229465524|gb|ACQ67298.1| Fe/S biogenesis protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 191 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 70/180 (38%), Gaps = 15/180 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF ++ R+F PG + G + + HL+ + Sbjct: 3 TITEAAQNHFVKLLSSQPEGTQIRVFVANPGKPTAECGVSYCPADSVESADTHLKFNLFS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 + ++ + P ++ + D D++GS + D+ +++R+ VL +++ Sbjct: 63 VFVDPISA--PYLNEAAI-DFVTDELGSQLTLKAPNAKVRKVADDAPLIERVDYVLQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + D L G C+GC TLK G+ L PE+K ++ Sbjct: 120 NPQLANHGGRVTLMEITDDAFAVLQFGGGCNGCSMVDVTLKEGIEKELLQQFPELKGVKD 179 >gi|15923926|ref|NP_371460.1| hypothetical protein SAV0936 [Staphylococcus aureus subsp. aureus Mu50] gi|15926525|ref|NP_374058.1| hypothetical protein SA0797 [Staphylococcus aureus subsp. aureus N315] gi|21282547|ref|NP_645635.1| hypothetical protein MW0818 [Staphylococcus aureus subsp. aureus MW2] gi|49483096|ref|YP_040320.1| hypothetical protein SAR0898 [Staphylococcus aureus subsp. aureus MRSA252] gi|49485712|ref|YP_042933.1| hypothetical protein SAS0806 [Staphylococcus aureus subsp. aureus MSSA476] gi|82750551|ref|YP_416292.1| hypothetical protein SAB0802c [Staphylococcus aureus RF122] gi|87159950|ref|YP_493539.1| hypothetical protein SAUSA300_0839 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194630|ref|YP_499426.1| hypothetical protein SAOUHSC_00873 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267370|ref|YP_001246313.1| NifU domain-containing protein [Staphylococcus aureus subsp. aureus JH9] gi|150393423|ref|YP_001316098.1| NifU domain-containing protein [Staphylococcus aureus subsp. aureus JH1] gi|151221019|ref|YP_001331841.1| hypothetical protein NWMN_0807 [Staphylococcus aureus subsp. aureus str. Newman] gi|156979262|ref|YP_001441521.1| hypothetical protein SAHV_0931 [Staphylococcus aureus subsp. aureus Mu3] gi|161509138|ref|YP_001574797.1| hypothetical protein USA300HOU_0897 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141927|ref|ZP_03566420.1| hypothetical protein SauraJ_09890 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316824|ref|ZP_04840037.1| hypothetical protein SauraC_11885 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731543|ref|ZP_04865708.1| NifU family protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253732709|ref|ZP_04866874.1| NifU family protein [Staphylococcus aureus subsp. aureus TCH130] gi|255005726|ref|ZP_05144327.2| hypothetical protein SauraM_04635 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257424985|ref|ZP_05601412.1| nitrogen fixation protein NifU [Staphylococcus aureus subsp. aureus 55/2053] gi|257427651|ref|ZP_05604050.1| nitrogen-fixing NifU domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430286|ref|ZP_05606669.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432983|ref|ZP_05609343.1| nitrogen fixation protein [Staphylococcus aureus subsp. aureus E1410] gi|257435887|ref|ZP_05611935.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|257795329|ref|ZP_05644308.1| nitrogen fixation protein NifU [Staphylococcus aureus A9781] gi|258406978|ref|ZP_05680131.1| nitrogen fixation protein NifU [Staphylococcus aureus A9763] gi|258421946|ref|ZP_05684867.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|258424377|ref|ZP_05687257.1| nitrogen fixation protein [Staphylococcus aureus A9635] gi|258435343|ref|ZP_05689082.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258441555|ref|ZP_05690915.1| nitrogen-fixing NifU domain-containing protein [Staphylococcus aureus A8115] gi|258447254|ref|ZP_05695403.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|258450014|ref|ZP_05698112.1| nitrogen fixation protein NifU [Staphylococcus aureus A6224] gi|258452112|ref|ZP_05700128.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|258455527|ref|ZP_05703486.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|262049630|ref|ZP_06022498.1| hypothetical protein SAD30_1213 [Staphylococcus aureus D30] gi|262052935|ref|ZP_06025116.1| hypothetical protein SA930_0147 [Staphylococcus aureus 930918-3] gi|269202551|ref|YP_003281820.1| NifU domain-containing protein [Staphylococcus aureus subsp. aureus ED98] gi|282893963|ref|ZP_06302194.1| thioredoxin [Staphylococcus aureus A8117] gi|282903473|ref|ZP_06311364.1| NifU domain protein [Staphylococcus aureus subsp. aureus C160] gi|282905251|ref|ZP_06313108.1| thioredoxin-family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282908231|ref|ZP_06316062.1| nitrogen-fixing NifU domain-containing protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910512|ref|ZP_06318316.1| nitrogen-fixing NifU domain-containing protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282913708|ref|ZP_06321497.1| NifU domain protein [Staphylococcus aureus subsp. aureus M899] gi|282916186|ref|ZP_06323948.1| thioredoxin-like protein [Staphylococcus aureus subsp. aureus D139] gi|282918634|ref|ZP_06326371.1| thioredoxin-like protein [Staphylococcus aureus subsp. aureus C427] gi|282922215|ref|ZP_06329910.1| thioredoxin-like protein [Staphylococcus aureus A9765] gi|282923624|ref|ZP_06331304.1| thioredoxin-like protein [Staphylococcus aureus subsp. aureus C101] gi|282927159|ref|ZP_06334781.1| thioredoxin-like protein [Staphylococcus aureus A10102] gi|283770001|ref|ZP_06342893.1| thioredoxin protein [Staphylococcus aureus subsp. aureus H19] gi|283957674|ref|ZP_06375127.1| NifU domain-containing protein [Staphylococcus aureus subsp. aureus A017934/97] gi|284023863|ref|ZP_06378261.1| NifU domain-containing protein [Staphylococcus aureus subsp. aureus 132] gi|293500750|ref|ZP_06666601.1| thioredoxin protein [Staphylococcus aureus subsp. aureus 58-424] gi|293509700|ref|ZP_06668411.1| nitrogen-fixing NifU domain-containing protein [Staphylococcus aureus subsp. aureus M809] gi|293524288|ref|ZP_06670975.1| NifU domain protein [Staphylococcus aureus subsp. aureus M1015] gi|294850211|ref|ZP_06790947.1| thioredoxin-like protein [Staphylococcus aureus A9754] gi|295405741|ref|ZP_06815550.1| thioredoxin-like protein [Staphylococcus aureus A8819] gi|295427419|ref|ZP_06820054.1| thioredoxin-like protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275869|ref|ZP_06858376.1| NifU domain-containing protein [Staphylococcus aureus subsp. aureus MR1] gi|297208429|ref|ZP_06924859.1| NifU domain protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245332|ref|ZP_06929203.1| hypothetical protein SLAG_01427 [Staphylococcus aureus A8796] gi|297590221|ref|ZP_06948860.1| NifU domain protein [Staphylococcus aureus subsp. aureus MN8] gi|300912505|ref|ZP_07129948.1| NifU domain protein [Staphylococcus aureus subsp. aureus TCH70] gi|304381511|ref|ZP_07364161.1| NifU domain protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13700740|dbj|BAB42036.1| SA0797 [Staphylococcus aureus subsp. aureus N315] gi|14246705|dbj|BAB57098.1| nitrogen fixation protein NifU [Staphylococcus aureus subsp. aureus Mu50] gi|21203984|dbj|BAB94683.1| MW0818 [Staphylococcus aureus subsp. aureus MW2] gi|49241225|emb|CAG39904.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244155|emb|CAG42581.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82656082|emb|CAI80490.1| nitrogen fixation protein [Staphylococcus aureus RF122] gi|87125924|gb|ABD20438.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202188|gb|ABD29998.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740439|gb|ABQ48737.1| nitrogen-fixing NifU domain protein [Staphylococcus aureus subsp. aureus JH9] gi|149945875|gb|ABR51811.1| nitrogen-fixing NifU domain protein [Staphylococcus aureus subsp. aureus JH1] gi|150373819|dbj|BAF67079.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156721397|dbj|BAF77814.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160367947|gb|ABX28918.1| possible NifU family protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724786|gb|EES93515.1| NifU family protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253729320|gb|EES98049.1| NifU family protein [Staphylococcus aureus subsp. aureus TCH130] gi|257272555|gb|EEV04678.1| nitrogen fixation protein NifU [Staphylococcus aureus subsp. aureus 55/2053] gi|257275844|gb|EEV07317.1| nitrogen-fixing NifU domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279063|gb|EEV09674.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282398|gb|EEV12533.1| nitrogen fixation protein [Staphylococcus aureus subsp. aureus E1410] gi|257285078|gb|EEV15197.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|257789301|gb|EEV27641.1| nitrogen fixation protein NifU [Staphylococcus aureus A9781] gi|257841517|gb|EEV65958.1| nitrogen fixation protein NifU [Staphylococcus aureus A9763] gi|257842279|gb|EEV66707.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|257845390|gb|EEV69424.1| nitrogen fixation protein [Staphylococcus aureus A9635] gi|257849004|gb|EEV72987.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257852345|gb|EEV76271.1| nitrogen-fixing NifU domain-containing protein [Staphylococcus aureus A8115] gi|257854002|gb|EEV76956.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|257856934|gb|EEV79837.1| nitrogen fixation protein NifU [Staphylococcus aureus A6224] gi|257860327|gb|EEV83159.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|257862345|gb|EEV85114.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|259159186|gb|EEW44249.1| hypothetical protein SA930_0147 [Staphylococcus aureus 930918-3] gi|259162272|gb|EEW46846.1| hypothetical protein SAD30_1213 [Staphylococcus aureus D30] gi|262074841|gb|ACY10814.1| NifU domain-containing protein [Staphylococcus aureus subsp. aureus ED98] gi|269940438|emb|CBI48815.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282314492|gb|EFB44882.1| thioredoxin-like protein [Staphylococcus aureus subsp. aureus C101] gi|282317768|gb|EFB48140.1| thioredoxin-like protein [Staphylococcus aureus subsp. aureus C427] gi|282319626|gb|EFB49974.1| thioredoxin-like protein [Staphylococcus aureus subsp. aureus D139] gi|282322740|gb|EFB53062.1| NifU domain protein [Staphylococcus aureus subsp. aureus M899] gi|282325904|gb|EFB56212.1| nitrogen-fixing NifU domain-containing protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282327896|gb|EFB58178.1| nitrogen-fixing NifU domain-containing protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331658|gb|EFB61170.1| thioredoxin-family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282590848|gb|EFB95923.1| thioredoxin-like protein [Staphylococcus aureus A10102] gi|282593505|gb|EFB98499.1| thioredoxin-like protein [Staphylococcus aureus A9765] gi|282596428|gb|EFC01389.1| NifU domain protein [Staphylococcus aureus subsp. aureus C160] gi|282763449|gb|EFC03578.1| thioredoxin [Staphylococcus aureus A8117] gi|283460148|gb|EFC07238.1| thioredoxin protein [Staphylococcus aureus subsp. aureus H19] gi|283470135|emb|CAQ49346.1| nitrogen fixation protein NifU [Staphylococcus aureus subsp. aureus ST398] gi|283791125|gb|EFC29940.1| NifU domain-containing protein [Staphylococcus aureus subsp. aureus A017934/97] gi|285816615|gb|ADC37102.1| nitrogen-fixing NifU domain protein [Staphylococcus aureus 04-02981] gi|290921251|gb|EFD98312.1| NifU domain protein [Staphylococcus aureus subsp. aureus M1015] gi|291095755|gb|EFE26016.1| thioredoxin protein [Staphylococcus aureus subsp. aureus 58-424] gi|291467797|gb|EFF10312.1| nitrogen-fixing NifU domain-containing protein [Staphylococcus aureus subsp. aureus M809] gi|294822985|gb|EFG39418.1| thioredoxin-like protein [Staphylococcus aureus A9754] gi|294969176|gb|EFG45196.1| thioredoxin-like protein [Staphylococcus aureus A8819] gi|295128807|gb|EFG58438.1| thioredoxin-like protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887168|gb|EFH26071.1| NifU domain protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177635|gb|EFH36885.1| hypothetical protein SLAG_01427 [Staphylococcus aureus A8796] gi|297576520|gb|EFH95235.1| NifU domain protein [Staphylococcus aureus subsp. aureus MN8] gi|298694175|gb|ADI97397.1| nitrogen fixation protein [Staphylococcus aureus subsp. aureus ED133] gi|300886751|gb|EFK81953.1| NifU domain protein [Staphylococcus aureus subsp. aureus TCH70] gi|302332549|gb|ADL22742.1| nitrogen-fixing NifU domain protein [Staphylococcus aureus subsp. aureus JKD6159] gi|302750764|gb|ADL64941.1| nitrogen-fixing NifU domain protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339874|gb|EFM05818.1| NifU domain protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438702|gb|ADQ77773.1| NifU domain protein [Staphylococcus aureus subsp. aureus TCH60] gi|312829333|emb|CBX34175.1| nifU-like domain protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130484|gb|EFT86471.1| possible NifU family protein [Staphylococcus aureus subsp. aureus CGS03] gi|315194468|gb|EFU24860.1| possible NifU family protein [Staphylococcus aureus subsp. aureus CGS00] gi|315197289|gb|EFU27627.1| possible NifU family protein [Staphylococcus aureus subsp. aureus CGS01] gi|320141247|gb|EFW33094.1| NifU-like domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143019|gb|EFW34810.1| NifU-like domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323440910|gb|EGA98618.1| NifU domain-containing protein [Staphylococcus aureus O11] gi|323443798|gb|EGB01410.1| NifU domain-containing protein [Staphylococcus aureus O46] gi|329313603|gb|AEB88016.1| Nitrogen-fixing NifU domain protein [Staphylococcus aureus subsp. aureus T0131] gi|329726251|gb|EGG62721.1| NifU-like protein [Staphylococcus aureus subsp. aureus 21189] gi|329728166|gb|EGG64605.1| NifU-like protein [Staphylococcus aureus subsp. aureus 21172] gi|329733972|gb|EGG70294.1| NifU-like protein [Staphylococcus aureus subsp. aureus 21193] Length = 80 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 D+ + ++ EV++ R+RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 4 EDTTMFDQVAEVIE-RLRPFLLRDGGDCSLIDVEDGIVKLQLHGACGTCPSSTITLKAGI 62 Query: 173 ANILNHFVPEVKDIRTV 189 L+ VP V ++ V Sbjct: 63 ERALHEEVPGVIEVEQV 79 >gi|33239869|ref|NP_874811.1| NifU-like protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237395|gb|AAP99463.1| Thioredoxin family protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 81 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + + +++VLD +RP + DGG++ IV + ++GAC CPS++ TLK G+ Sbjct: 5 TMALTHANVEKVLDE-LRPFLMADGGNVEIVEIDGPIVKVRLQGACGSCPSSTMTLKMGI 63 Query: 173 ANILNHFVPEVKDIRTV 189 L +PEV ++ V Sbjct: 64 ERKLCEMIPEVSEVIQV 80 >gi|159902957|ref|YP_001550301.1| NifU-like protein [Prochlorococcus marinus str. MIT 9211] gi|159888133|gb|ABX08347.1| NifU-like protein [Prochlorococcus marinus str. MIT 9211] Length = 81 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 E+ +++VLD +RP + DGG++ IV + ++GAC CPS++ TLK Sbjct: 3 QETMPLTKDNVEKVLDE-LRPFLMADGGNVEIVEIDGPIVKVRLQGACGSCPSSTMTLKM 61 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ L +PEV ++ + Sbjct: 62 GIERKLREMIPEVSEVVQI 80 >gi|189426530|ref|YP_001953707.1| nitrogen-fixing NifU domain protein [Geobacter lovleyi SZ] gi|189422789|gb|ACD97187.1| nitrogen-fixing NifU domain protein [Geobacter lovleyi SZ] Length = 74 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANI 175 ++++++ VLD +VRP + RDGGD+ DGIV + ++GAC CP ++ TLK G+ Sbjct: 1 MIEKVQAVLD-QVRPMLQRDGGDVELIEVTADGIVKVKLQGACGSCPMSTMTLKMGIEKA 59 Query: 176 LNHFVPEVKDIRTV 189 + +PE+ +++ V Sbjct: 60 IKEQIPEIVEVQQV 73 >gi|282875569|ref|ZP_06284440.1| NifU-like protein [Staphylococcus epidermidis SK135] gi|281295596|gb|EFA88119.1| NifU-like protein [Staphylococcus epidermidis SK135] Length = 80 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +S + ++ EV++ R+RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 4 ENSTMFDQVAEVIE-RLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGI 62 Query: 173 ANILNHFVPEVKDIRTV 189 L+ VP V ++ V Sbjct: 63 ERALHEEVPGVIEVEQV 79 >gi|294941309|ref|XP_002783074.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] gi|239895342|gb|EER14870.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] Length = 165 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 69/119 (57%), Gaps = 7/119 (5%) Query: 73 LRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPA 132 L+P V +I + F I + + ++ G +D VV+ I E+L+ R++P Sbjct: 2 LKPNVELVISQFFD----IPNVKPVAPDSIEYTQEGQDQHNDD-VVKSIHEILEQRIKPF 56 Query: 133 VARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 V RDGGD+ F + G++ + + G+C+GCP +S TLK+G+ ++ H++PEVK++ + Sbjct: 57 VERDGGDVEFIAFDSDTGVLQIRLVGSCAGCPKSSVTLKFGIQRMVCHYIPEVKNVINI 115 >gi|254507293|ref|ZP_05119429.1| IscR-regulated protein YhgI [Vibrio parahaemolyticus 16] gi|219549753|gb|EED26742.1| IscR-regulated protein YhgI [Vibrio parahaemolyticus 16] Length = 195 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 69/181 (38%), Gaps = 16/181 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+N + R+F + PG + G + + L Sbjct: 6 TITENAQSHFANLLSQQPEGTNIRVFVVNPGTQNAECGVSYCPPEAVESTDTELAYEHFS 65 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ P + + + D D MGS + D+ +V+R++ V+ +V Sbjct: 66 AFVDELS--LPFLEDAEI-DFVTDKMGSQLTLKAPNAKMRKVSDDAPLVERVEYVIQTQV 122 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIR 187 P +A GG + +GI ++ G C+GC TLK G+ +L F E+ +R Sbjct: 123 NPQLAGHGGHVNLVEITEEGIAIVAFGGGCNGCSMVDVTLKEGIEKELLQQFEGELTAVR 182 Query: 188 T 188 Sbjct: 183 D 183 >gi|148238937|ref|YP_001224324.1| NifU-like protein [Synechococcus sp. WH 7803] gi|147847476|emb|CAK23027.1| NifU-like protein [Synechococcus sp. WH 7803] Length = 81 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + +++VLD +RP + DGG++ +V + ++GAC CPS++ TLK G Sbjct: 4 ETMPLTSENVEKVLDE-LRPFLMADGGNVEVVEIDGPVVKVRLQGACGSCPSSTMTLKMG 62 Query: 172 VANILNHFVPEVKDIRTV 189 + + +PEV ++ V Sbjct: 63 IERKMREAIPEVSEVVQV 80 >gi|90412702|ref|ZP_01220703.1| hypothetical protein P3TCK_22380 [Photobacterium profundum 3TCK] gi|90326277|gb|EAS42696.1| hypothetical protein P3TCK_22380 [Photobacterium profundum 3TCK] Length = 192 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 67/182 (36%), Gaps = 16/182 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F + PG + G + + + + Sbjct: 3 TITESAQQHFGKLLAQQPEGTNIRVFVVNPGTQNAECGVSYCPPEAVEASDTKIELELFD 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ P + + + D D MGS + D+ +++R+ + +V Sbjct: 63 AYLDELS--LPFLDDAEI-DFVTDKMGSQLTLKAPNAKVRKVSDDATLMERVDYAIQTQV 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIR 187 P +A GG++ DG+ L G C+GC TLK G+ +L F E+ +R Sbjct: 120 NPQLAGHGGNVSLAEITEDGVAILQFGGGCNGCSMVDVTLKEGIEKELLAQFAGELTGVR 179 Query: 188 TV 189 + Sbjct: 180 DI 181 >gi|70727016|ref|YP_253930.1| nitrogen fixation protein NifU [Staphylococcus haemolyticus JCSC1435] gi|223043066|ref|ZP_03613114.1| nitrogen fixation protein NifU [Staphylococcus capitis SK14] gi|228474235|ref|ZP_04058970.1| nitrogen fixation protein NifU [Staphylococcus hominis SK119] gi|239636541|ref|ZP_04677543.1| nitrogen fixation protein NifU [Staphylococcus warneri L37603] gi|242373103|ref|ZP_04818677.1| nitrogen fixation protein NifU [Staphylococcus epidermidis M23864:W1] gi|289551248|ref|YP_003472152.1| nitrogen-fixing NifU domain protein [Staphylococcus lugdunensis HKU09-01] gi|314933148|ref|ZP_07840513.1| NifU domain protein [Staphylococcus caprae C87] gi|314936844|ref|ZP_07844191.1| NifU domain protein [Staphylococcus hominis subsp. hominis C80] gi|315658750|ref|ZP_07911619.1| NifU domain protein [Staphylococcus lugdunensis M23590] gi|68447740|dbj|BAE05324.1| nitrogen fixation protein NifU [Staphylococcus haemolyticus JCSC1435] gi|222443920|gb|EEE50017.1| nitrogen fixation protein NifU [Staphylococcus capitis SK14] gi|228271594|gb|EEK12941.1| nitrogen fixation protein NifU [Staphylococcus hominis SK119] gi|239597896|gb|EEQ80391.1| nitrogen fixation protein NifU [Staphylococcus warneri L37603] gi|242349257|gb|EES40858.1| nitrogen fixation protein NifU [Staphylococcus epidermidis M23864:W1] gi|289180780|gb|ADC88025.1| nitrogen-fixing NifU domain protein [Staphylococcus lugdunensis HKU09-01] gi|313653298|gb|EFS17055.1| NifU domain protein [Staphylococcus caprae C87] gi|313655463|gb|EFS19208.1| NifU domain protein [Staphylococcus hominis subsp. hominis C80] gi|315496205|gb|EFU84531.1| NifU domain protein [Staphylococcus lugdunensis M23590] gi|330684919|gb|EGG96601.1| NifU-like protein [Staphylococcus epidermidis VCU121] Length = 80 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ + ++ EV++ R+RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 4 ENATMFDQVAEVIE-RLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGI 62 Query: 173 ANILNHFVPEVKDIRTV 189 L+ VP V ++ V Sbjct: 63 ERALHEEVPGVIEVEQV 79 >gi|297583473|ref|YP_003699253.1| nitrogen-fixing NifU domain-containing protein [Bacillus selenitireducens MLS10] gi|297141930|gb|ADH98687.1| nitrogen-fixing NifU domain protein [Bacillus selenitireducens MLS10] Length = 78 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + + +++EVLD ++RP + RDGGD+ DG+V + + GAC CPS++ TLK G+ Sbjct: 2 TTETMESQVQEVLD-KLRPFLLRDGGDVELVDVEDGVVKVRLMGACGSCPSSTITLKAGI 60 Query: 173 ANILNHFVPEVKDIRTV 189 L VP V ++ V Sbjct: 61 ERALLEEVPGVTELEQV 77 >gi|255083372|ref|XP_002504672.1| predicted protein [Micromonas sp. RCC299] gi|226519940|gb|ACO65930.1| predicted protein [Micromonas sp. RCC299] Length = 192 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%) Query: 104 DMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPS 163 G E +++VLD VRP + DGGD+ +V L + GAC CPS Sbjct: 29 AAGESSISEKLELTADNVEKVLDE-VRPYLIADGGDVELVEIDGLVVRLKLNGACGSCPS 87 Query: 164 ASETLKYGVANILNHFVPEVKDIRTV 189 ++ T++ G+ L +PE+ ++ + Sbjct: 88 STVTMRMGIEKRLMEKIPEIMEVEQI 113 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 6/74 (8%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 + ++ LD +RP +A GG + D IV + + G ++ T++ V Sbjct: 121 DLTEENVEATLDE-IRPYLAGTGGGQLELVDIEDPIVKVRLTGP----AASVMTVRVAVT 175 Query: 174 NILNHFVPEVKDIR 187 L +P + ++ Sbjct: 176 QKLREKMPSIAAVQ 189 >gi|116073290|ref|ZP_01470552.1| NifU-like protein [Synechococcus sp. RS9916] gi|116068595|gb|EAU74347.1| NifU-like protein [Synechococcus sp. RS9916] Length = 81 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + +++VLD +RP + DGG++ +V + ++GAC CPS++ TLK G Sbjct: 4 ETLPLTSENVEKVLDE-LRPFLMADGGNVEVVEIDGPVVKVRLQGACGSCPSSTMTLKMG 62 Query: 172 VANILNHFVPEVKDIRTV 189 + + +PEV ++ V Sbjct: 63 IERKMREAIPEVSEVVQV 80 >gi|294897644|ref|XP_002776034.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] gi|239882510|gb|EER07850.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] Length = 154 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 76/145 (52%), Gaps = 8/145 (5%) Query: 48 IPGIASVYFGYDFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMG 106 I G+ V + + V K DW ++P V ++ F P + + ++ + Sbjct: 1 IEGVERVVLTHHNVAVSKVSSIDWCFVKPKVESVLSNFFA--VPGLQSVYRYALQFETEV 58 Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSA 164 + +++RI EVLD+R+RP + DGGD+ + + G++ + ++GAC+GCP + Sbjct: 59 EE---AEKAKLMERIAEVLDDRIRPVLQDDGGDVDVADFDEETGVLSVRLKGACAGCPMS 115 Query: 165 SETLKYGVANILNHFVPEVKDIRTV 189 S TL++ + N+L VPEVK + + Sbjct: 116 SVTLRFRIENMLVQSVPEVKKVINI 140 >gi|258514732|ref|YP_003190954.1| nitrogen-fixing NifU domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257778437|gb|ACV62331.1| nitrogen-fixing NifU domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 73 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 2/73 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANI 175 + +++KEVL +VRP + RDGGD+ DGIV + ++GACSGCP A TLK G+ + Sbjct: 1 MHEKVKEVL-GKVRPYLQRDGGDVELVDITADGIVRVKLKGACSGCPGALITLKQGIERV 59 Query: 176 LNHFVPEVKDIRT 188 L +PEVK + Sbjct: 60 LKQEIPEVKGVEQ 72 >gi|294901264|ref|XP_002777311.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] gi|239884853|gb|EER09127.1| HIRA-interacting protein, putative [Perkinsus marinus ATCC 50983] Length = 299 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 11/163 (6%) Query: 32 NAKEAEISPLASRIFSIPGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPI 91 + + +A + + G+ V G F+++ + E + I Sbjct: 23 TTESSFCPRVAKELLEVKGVDKVTVGDGFLSIIASRPSGRE-----FAFAEEQLAAFKSI 77 Query: 92 IHNGGLGDMK----LDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR- 146 + + + S + V +RI+ +LD RVRP +A+DGGD F + Sbjct: 78 LDKAAVEPENYLSGDSTVTERAPSSSSNEVEERIQSLLDTRVRPVIAQDGGDCEFISFDS 137 Query: 147 -DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 G V L++ G+C GCP + +TLK + L +V EV + Sbjct: 138 QTGRVTLALHGSCEGCPQSVKTLKDSIERTLKFYVEEVSSVEQ 180 >gi|109900531|ref|YP_663786.1| putative DNA uptake protein [Pseudoalteromonas atlantica T6c] gi|119370611|sp|Q15N06|NFUA_PSEA6 RecName: Full=Fe/S biogenesis protein nfuA gi|109702812|gb|ABG42732.1| HesB/YadR/YfhF [Pseudoalteromonas atlantica T6c] Length = 192 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 59/179 (32%), Gaps = 14/179 (7%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF E + R+F + PG S G + D + G Sbjct: 4 ISDTAQAHFCKLLEKQEPDTNIRVFVVNPGTPSAECGVSYCPP--DAVESTDTTLEFNGF 61 Query: 81 IMEHFISGDPIIHNGGLGDMKLD---------DMGSGDFIESDSAVVQRIKEVLDNRVRP 131 P + + + ++ D+ + +RI +++ + P Sbjct: 62 DAVVDAESAPFLSEAEIDFVTDQMGSQLTLKAPNAKARKVDDDAPLEERINYMIEAEINP 121 Query: 132 AVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIRT 188 +A GG ++ G L G C+GC TLK G+ +L F E+ ++ Sbjct: 122 QLASHGGKVMLMEITEKGEAILQFGGGCNGCSMVDVTLKDGIEKQMLAQFSGELTAVKD 180 >gi|269103899|ref|ZP_06156596.1| hypothetical protein VDA_003326 [Photobacterium damselae subsp. damselae CIP 102761] gi|268163797|gb|EEZ42293.1| hypothetical protein VDA_003326 [Photobacterium damselae subsp. damselae CIP 102761] Length = 192 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 69/182 (37%), Gaps = 16/182 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F + PG + G + + + ++ + Sbjct: 3 TISASAQEHFGKLLAQQPEGTNIRVFVVNPGTPNAECGVSYCPPEAVEANDTEIKFDLFS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ P + + + D D MGS + D+ +++R+ V+ +V Sbjct: 63 AFVDELS--LPFLTDAQI-DFVTDKMGSQLTLKAPNAKVRKVADDAPLMERVDYVIQTQV 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIR 187 P +A GG I DGI + G C+GC TLK G+ +L F E+ +R Sbjct: 120 NPQLAGHGGHISLIEITEDGIAVIQFGGGCNGCSMVDVTLKEGIEKELLAQFEGELNAVR 179 Query: 188 TV 189 V Sbjct: 180 DV 181 >gi|258405531|ref|YP_003198273.1| nitrogen-fixing NifU domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257797758|gb|ACV68695.1| nitrogen-fixing NifU domain protein [Desulfohalobium retbaense DSM 5692] Length = 73 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + ++I+ LD +VRP + DGGDI + IV + ++GAC GCP + TLK GV + Sbjct: 1 MREKIEAALD-KVRPVLQADGGDIELVEITDNNIVRVRLQGACKGCPMSQMTLKNGVERV 59 Query: 176 LNHFVPEVKDIRTV 189 L VPE+K + +V Sbjct: 60 LLKEVPEIKGVESV 73 >gi|298492022|ref|YP_003722199.1| nitrogen-fixing NifU domain-containing protein ['Nostoc azollae' 0708] gi|298233940|gb|ADI65076.1| nitrogen-fixing NifU domain protein ['Nostoc azollae' 0708] Length = 79 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 + + ++ ++ VLD +RP + DGG++ IV L ++GAC CPS++ TL+ Sbjct: 1 MSTMELTLENVETVLDE-MRPYLMSDGGNVEVVELDGPIVKLRLQGACGSCPSSAMTLRM 59 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ L +PE+ +I V Sbjct: 60 GIERRLKELIPEIAEIEQV 78 >gi|226503511|ref|NP_001150793.1| NFU3 [Zea mays] gi|195641898|gb|ACG40417.1| NFU3 [Zea mays] Length = 213 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + +++VLD VRP++ DGG++ +V L ++GAC CPS++ TLK G+ L Sbjct: 63 TEENVEKVLDE-VRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRL 121 Query: 177 NHFVPEVKDIRTV 189 +P++ ++ + Sbjct: 122 RDKIPDILEVEQI 134 Score = 40.2 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 8/75 (10%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGACSGCPSAS-ETLKYGV 172 + +VLD +RP ++ GG + +V + + G P+A T++ V Sbjct: 142 DLTADNVDKVLDE-IRPYLSGTGGGSLELLQIDGYVVKIRIGG-----PAAGVMTVRVAV 195 Query: 173 ANILNHFVPEVKDIR 187 L +P + ++ Sbjct: 196 TQKLREKIPSILAVQ 210 >gi|33860975|ref|NP_892536.1| NifU-like protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33639707|emb|CAE18877.1| NifU-like protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 81 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + ++ VLD +RP + DGG++ IV + ++GAC CPS++ TLK G Sbjct: 4 ETLPLTNENVETVLDE-LRPFLISDGGNVEIAEIDGPIVKVRLQGACGSCPSSTMTLKMG 62 Query: 172 VANILNHFVPEVKDIRTV 189 + L +PE+ ++ V Sbjct: 63 IERKLKEMIPEISEVVQV 80 >gi|28896920|ref|NP_796525.1| putative DNA uptake protein [Vibrio parahaemolyticus RIMD 2210633] gi|153837871|ref|ZP_01990538.1| thioredoxin [Vibrio parahaemolyticus AQ3810] gi|260365893|ref|ZP_05778387.1| IscR-regulated protein YhgI [Vibrio parahaemolyticus K5030] gi|260877820|ref|ZP_05890175.1| IscR-regulated protein YhgI [Vibrio parahaemolyticus AN-5034] gi|260895531|ref|ZP_05904027.1| IscR-regulated protein YhgI [Vibrio parahaemolyticus Peru-466] gi|260902555|ref|ZP_05910950.1| IscR-regulated protein YhgI [Vibrio parahaemolyticus AQ4037] gi|51702006|sp|Q87TC4|NFUA_VIBPA RecName: Full=Fe/S biogenesis protein nfuA gi|28805128|dbj|BAC58409.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149748734|gb|EDM59579.1| thioredoxin [Vibrio parahaemolyticus AQ3810] gi|308088597|gb|EFO38292.1| IscR-regulated protein YhgI [Vibrio parahaemolyticus Peru-466] gi|308089948|gb|EFO39643.1| IscR-regulated protein YhgI [Vibrio parahaemolyticus AN-5034] gi|308109708|gb|EFO47248.1| IscR-regulated protein YhgI [Vibrio parahaemolyticus AQ4037] gi|308113467|gb|EFO51007.1| IscR-regulated protein YhgI [Vibrio parahaemolyticus K5030] gi|328471695|gb|EGF42572.1| Fe/S biogenesis protein NfuA [Vibrio parahaemolyticus 10329] Length = 194 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 71/185 (38%), Gaps = 16/185 (8%) Query: 17 IPGQVVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRP 75 + + HF+N + RIF + PG + G + + + Sbjct: 1 MSNITITETAQTHFANLLGQQPEGTNIRIFVVNPGTQNAECGVSYCPPEAVEATDTEIPY 60 Query: 76 PVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVL 125 ++ P + + + D D MGS + D+ +V+R++ V+ Sbjct: 61 AGFSAYVDELS--LPFLEDAEI-DFVTDKMGSQLTLKAPNAKMRKVSDDAPLVERVEYVI 117 Query: 126 DNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEV 183 +V P +A GG + G+ ++ G C+GC TLK G+ +LN FV E+ Sbjct: 118 QTQVNPQLAGHGGHVNLVEITEAGVAIVAFGGGCNGCSMVDVTLKEGIEKELLNQFVGEL 177 Query: 184 KDIRT 188 +R Sbjct: 178 TAVRD 182 >gi|163802249|ref|ZP_02196144.1| hypothetical protein 1103602000603_AND4_17694 [Vibrio sp. AND4] gi|159174054|gb|EDP58864.1| hypothetical protein AND4_17694 [Vibrio sp. AND4] Length = 194 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 16/185 (8%) Query: 17 IPGQVVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRP 75 + + HF+N + RIF + PG + G + + + Sbjct: 1 MSNITITETAQTHFANLLGQQPEGTNIRIFVVNPGTQNAECGVSYCPPEAIESTDTEIPY 60 Query: 76 PVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVL 125 ++ P + + + D D MGS + D+ +V+R++ V+ Sbjct: 61 SGFSAYVDELS--LPFLADAEI-DFVTDKMGSQLTLKAPNAKMRKVADDAPLVERVEYVI 117 Query: 126 DNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEV 183 +V P +A GG + DGI ++ G C+GC TLK G+ +LN F+ E+ Sbjct: 118 QTQVNPQLAGHGGHVNLVEITDDGIAIVAFGGGCNGCSMVDVTLKEGIEKELLNQFIGEL 177 Query: 184 KDIRT 188 +R Sbjct: 178 TAVRD 182 >gi|149036648|gb|EDL91266.1| histone cell cycle regulation defective interacting protein 5 (predicted), isoform CRA_b [Rattus norvegicus] Length = 79 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 44/60 (73%) Query: 130 RPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 RP V DGGD++++G+ DGIV L ++G+C+ CPS+ TLK G+ N+L ++PEV+ + V Sbjct: 6 RPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQV 65 >gi|269959406|ref|ZP_06173789.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835843|gb|EEZ89919.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 194 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 67/182 (36%), Gaps = 10/182 (5%) Query: 17 IPGQVVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRP 75 + + HF+N + R+F + PG + G + + + Sbjct: 1 MSNITITETAQTHFANLLGQQPEGTNIRVFVVNPGTQNAECGVSYCPPEAVEGTDTEIPY 60 Query: 76 P-VLGMIME----HFISGDPIIHNGGLGDMKLDDMGSGDFIE--SDSAVVQRIKEVLDNR 128 I E + +G + + D+ +V+R++ V+ + Sbjct: 61 SGFSAFIDELSLPFLEDAEIDFVTDKMGSQLTLKAPNAKMRKVADDAPLVERVEYVIQTQ 120 Query: 129 VRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDI 186 V P +A GG + DGI ++ G C+GC TLK G+ +LN FV E+ + Sbjct: 121 VNPQLAGHGGHVNLVEITDDGIAIVAFGGGCNGCSMVDVTLKEGIEKELLNQFVGELTAV 180 Query: 187 RT 188 R Sbjct: 181 RD 182 >gi|260913511|ref|ZP_05919989.1| Fe/S-biogenesis protein NfuA [Pasteurella dagmatis ATCC 43325] gi|260632451|gb|EEX50624.1| Fe/S-biogenesis protein NfuA [Pasteurella dagmatis ATCC 43325] Length = 194 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 64/181 (35%), Gaps = 14/181 (7%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + + RIF + PG + G + + ++ Sbjct: 5 KISEAAQAHFRRLLDQQEEGTNIRIFVVNPGSPNAECGVSYCPANAVEATDTEMKYATFS 64 Query: 80 MIMEHFISGDPIIHNGGLGDMKLD---------DMGSGDFIESDSAVVQRIKEVLDNRVR 130 ++ P + + + + + + D+ +++R++ V+ ++ Sbjct: 65 AFVDEIS--LPFLEDAEIDYVTEELGAQLTLKAPNAKMRKVADDAPLIERVEYVIQTQIN 122 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRT 188 P +A GG I +G L G C+GC TLK G+ L P E+K + Sbjct: 123 PQLASHGGKITLIEITNEGYAILQFGGGCNGCSMVDVTLKDGIEKQLLSLFPNELKGAKD 182 Query: 189 V 189 V Sbjct: 183 V 183 >gi|194476553|ref|YP_002048732.1| NifU-like protein [Paulinella chromatophora] gi|171191560|gb|ACB42522.1| NifU-like protein [Paulinella chromatophora] Length = 81 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + ++ ++ VL N +RP + DGG++ +V + ++GAC CPS++ TLK G Sbjct: 4 ENLALTLENVETVL-NELRPFLIADGGNVEVAEIDGPVVKVRLQGACGSCPSSTMTLKMG 62 Query: 172 VANILNHFVPEVKDIRTV 189 + L +PEV ++ V Sbjct: 63 IERKLREAIPEVSEVIQV 80 >gi|153833894|ref|ZP_01986561.1| thioredoxin [Vibrio harveyi HY01] gi|156972936|ref|YP_001443843.1| putative DNA uptake protein [Vibrio harveyi ATCC BAA-1116] gi|166990532|sp|A7MST1|NFUA_VIBHB RecName: Full=Fe/S biogenesis protein nfuA gi|148869732|gb|EDL68709.1| thioredoxin [Vibrio harveyi HY01] gi|156524530|gb|ABU69616.1| hypothetical protein VIBHAR_00614 [Vibrio harveyi ATCC BAA-1116] Length = 194 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 67/182 (36%), Gaps = 10/182 (5%) Query: 17 IPGQVVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRP 75 + + HF+N + R+F + PG + G + + + Sbjct: 1 MSNITITETAQTHFANLLGQQPEGTNIRVFVVNPGTQNAECGVSYCPPEAVEGTDTEIPY 60 Query: 76 P-VLGMIME----HFISGDPIIHNGGLGDMKLDDMGSGDFIE--SDSAVVQRIKEVLDNR 128 I E + +G + + D+ +V+R++ V+ + Sbjct: 61 SGFSAFIDELSLPFLEDAEIDFVTDKMGSQLTLKAPNAKMRKVSDDAPLVERVEYVIQTQ 120 Query: 129 VRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDI 186 V P +A GG + DGI ++ G C+GC TLK G+ +LN FV E+ + Sbjct: 121 VNPQLAGHGGHVNLVEITDDGIAIVAFGGGCNGCSMVDVTLKEGIEKELLNQFVGELTAV 180 Query: 187 RT 188 R Sbjct: 181 RD 182 >gi|51701987|sp|Q7MPY4|NFUA_VIBVY RecName: Full=Fe/S biogenesis protein nfuA gi|51702011|sp|Q8DDU2|NFUA_VIBVU RecName: Full=Fe/S biogenesis protein nfuA Length = 194 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 69/185 (37%), Gaps = 16/185 (8%) Query: 17 IPGQVVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRP 75 + + HF+N + R+F + PG + G + + + Sbjct: 1 MSNITITEAAQTHFANLLGQQPDGTNIRVFVVNPGTQNAECGVSYCPPEAVEATDTEIPY 60 Query: 76 PVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVL 125 ++ P + + + D D MGS + D+ +++R++ + Sbjct: 61 QSFSAYVDELS--LPFLEDAEI-DYVTDKMGSQLTLKAPNAKMRKVADDAPLLERVEYAI 117 Query: 126 DNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEV 183 +V P +A GG + D G+ ++ G C+GC TLK G+ +L F E+ Sbjct: 118 QTQVNPQLAGHGGHVKLMEITDAGVAIVAFGGGCNGCSMVDVTLKEGIEKELLQQFSGEL 177 Query: 184 KDIRT 188 +R Sbjct: 178 TAVRD 182 >gi|145630391|ref|ZP_01786172.1| predicted gluconate transport-associated protein [Haemophilus influenzae R3021] gi|260582302|ref|ZP_05850095.1| Fe/S biogenesis protein nfuA [Haemophilus influenzae NT127] gi|144984126|gb|EDJ91563.1| predicted gluconate transport-associated protein [Haemophilus influenzae R3021] gi|260094670|gb|EEW78565.1| Fe/S biogenesis protein nfuA [Haemophilus influenzae NT127] Length = 198 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 62/178 (34%), Gaps = 10/178 (5%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG- 79 + HF + + RIF + PG + G + + ++ Sbjct: 10 ISDAAQAHFRKLLDTQEEGTNIRIFVVNPGTPNAECGVSYCPPNAVEESDIEMKYNTFSA 69 Query: 80 MIME----HFISGDPIIHNGGLGDMKLDDMGSGDFIE--SDSAVVQRIKEVLDNRVRPAV 133 I E + LG + + D+ +++R++ V+ ++ P + Sbjct: 70 FIDEVSLPFLEEAEIDYVTEELGAQLTLKAPNAKMRKVADDAPLIERVEYVIQTQINPQL 129 Query: 134 ARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRTV 189 A GG I DG L G C+GC TLK GV L P E+K + V Sbjct: 130 ANHGGRITLIEITEDGYAVLQFGGGCNGCSMVDVTLKDGVEKQLVSLFPNELKGAKDV 187 >gi|82548259|gb|ABB82950.1| uncharacterized protein with NifU-like and HesB-like domains [uncultured organism HF70_19B12] Length = 187 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 69/166 (41%), Gaps = 8/166 (4%) Query: 28 IHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFIS 87 +H+S+ E S LA RI I G F YD + + + V G + + Sbjct: 13 LHYSSQAEEGDS-LALRI-EIVGRGPKGFQYDLQFIDISDASADDVAQEVRGFQVRIAMR 70 Query: 88 GDPIIHNGGLGDMKLDDMGSGDFIESD-----SAVVQRIKEVLDNRVRPAVARDGGDIVF 142 + L D K MG G E+ + QR+ EV+D V PAVA GG + Sbjct: 71 SAKYLEGATL-DFKETLMGGGFSFENPNPLWIDDLSQRVAEVIDKNVNPAVASHGGHVDL 129 Query: 143 KGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 G ++ G C GC A TLK GV ++ VPE+ ++ Sbjct: 130 VGVDANKAIIAFGGGCQGCGMADVTLKQGVEVMIMDNVPEIIEVID 175 >gi|59713068|ref|YP_205844.1| putative DNA uptake protein [Vibrio fischeri ES114] gi|197336442|ref|YP_002157246.1| IscR-regulated protein YhgI [Vibrio fischeri MJ11] gi|75353229|sp|Q5E1Z0|NFUA_VIBF1 RecName: Full=Fe/S biogenesis protein nfuA gi|254767334|sp|B5FCD0|NFUA_VIBFM RecName: Full=Fe/S biogenesis protein nfuA gi|59481169|gb|AAW86956.1| predicted gluconate transport associated protein [Vibrio fischeri ES114] gi|197317932|gb|ACH67379.1| IscR-regulated protein YhgI [Vibrio fischeri MJ11] Length = 194 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 68/180 (37%), Gaps = 16/180 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ + R+F + PG + G + + + L+ L Sbjct: 6 ITESAQEHFAKLLAQQPEGTNIRVFVVNPGTQNAECGVSYCPPEAVEANDTELKFEKLSA 65 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 ++ P + + + D D MGS + D+ + +R++ + +V Sbjct: 66 YVDELS--LPFLEDADI-DYVTDKMGSQLTLKAPNAKMRKVADDAPLFERVEYAIQTQVN 122 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIRT 188 P +A GG + +G+ + G C+GC TLK G+ +L F E+ ++ Sbjct: 123 PQLAGHGGHVSLMEINDEGVAIVQFGGGCNGCSMVDVTLKEGIEKELLVQFEGELTAVKD 182 >gi|117620229|ref|YP_854827.1| putative DNA uptake protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|150383443|sp|A0KF09|NFUA_AERHH RecName: Full=Fe/S biogenesis protein nfuA gi|117561636|gb|ABK38584.1| protein GntY [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 192 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 10/177 (5%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF E + R+F + PG + G + + +HL Sbjct: 4 ISDTAQAHFRKLLEKQPDGTNIRVFVVNPGTQNAECGVSYCPPDAVDPEDQHLPFSGFDC 63 Query: 81 IMEHFIS------GDPIIHNGGLGDMKLDDMGSGDFI-ESDSAVVQRIKEVLDNRVRPAV 133 +++ + + + + L + D+ ++ RI+ VL + V P + Sbjct: 64 LVDPLSAPFLVDATIDFVTDQMGSQLTLKAPNAKMRKVADDAPLIDRIEYVLMSEVNPML 123 Query: 134 ARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRT 188 A GG + D + L G C+GC TLK G+ L P E+ ++ Sbjct: 124 AGHGGKVTLVELTEDKLAILQFGGGCNGCSMVDYTLKEGIEKQLLEKFPGELNGVKD 180 >gi|260436644|ref|ZP_05790614.1| NifU domain protein [Synechococcus sp. WH 8109] gi|260414518|gb|EEX07814.1| NifU domain protein [Synechococcus sp. WH 8109] Length = 76 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + ++ +++VLD +RP + DGG++ IV + ++GAC CPS++ TLK G+ Sbjct: 2 ALTLENVEKVLDE-LRPFLMADGGNVEVVELDGPIVKVRLQGACGSCPSSTMTLKMGIER 60 Query: 175 ILNHFVPEVKDIRTV 189 + +PEV ++ V Sbjct: 61 KMRESIPEVSEVVQV 75 >gi|261250552|ref|ZP_05943127.1| hypothetical protein VIA_000571 [Vibrio orientalis CIP 102891] gi|260939121|gb|EEX95108.1| hypothetical protein VIA_000571 [Vibrio orientalis CIP 102891] Length = 195 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 10/178 (5%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPP-VL 78 + HF+N + R+F + PG + G + + L+ Sbjct: 6 TITENAQSHFANLLGQQPEGTNIRVFVVNPGTQNAECGVSYCPTEAVESTDTELKFEGFS 65 Query: 79 GMIME----HFISGDPIIHNGGLGDMKLDDMGSGDFIE--SDSAVVQRIKEVLDNRVRPA 132 I E + +G + + D+ +V+R++ V+ +V P Sbjct: 66 AFIDELSLPFLEDAEIDFVTDKMGSQLTLKAPNAKMRKVSDDAPLVERVEYVIQTQVNPQ 125 Query: 133 VARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIRT 188 +A GG + G+ ++ G C+GC TLK G+ +L F E+ +R Sbjct: 126 LAGHGGHVNLVEITEQGVAIVAFGGGCNGCSMVDVTLKEGIEKELLQQFEGELSAVRD 183 >gi|152977980|ref|YP_001343609.1| putative DNA uptake protein [Actinobacillus succinogenes 130Z] gi|171472933|sp|A6VL27|NFUA_ACTSZ RecName: Full=Fe/S biogenesis protein nfuA gi|150839703|gb|ABR73674.1| HesB/YadR/YfhF-family protein [Actinobacillus succinogenes 130Z] Length = 194 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 62/179 (34%), Gaps = 10/179 (5%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPP-VL 78 + HF E++ RIF + PG + G + + + L+ Sbjct: 5 KISDAAQAHFRKLLESQEEGTNIRIFVVNPGTPNAECGVSYCPPSNVEENDSELKFNGFS 64 Query: 79 GMIME----HFISGDPIIHNGGLGDMKLDDMGSGDFIE--SDSAVVQRIKEVLDNRVRPA 132 I + + LG + + D+ +++R+ V+ ++ P Sbjct: 65 AFIDDISYPFLEDAEIDYVTEELGTQLTLKAPNAKMRKVADDAPLIERVDYVIQTQINPQ 124 Query: 133 VARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFV-PEVKDIRTV 189 +A GG I DG L G C+GC TLK GV L E+K + + Sbjct: 125 LASHGGRITLIEITDDGYAVLQFGGGCNGCSMVDVTLKDGVEKQLVEMFNGELKGAKDI 183 >gi|163784585|ref|ZP_02179431.1| nifU-like domain protein [Hydrogenivirga sp. 128-5-R1-1] gi|159880146|gb|EDP73804.1| nifU-like domain protein [Hydrogenivirga sp. 128-5-R1-1] Length = 89 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 4/83 (4%) Query: 110 FIESDSAVVQR--IKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASE 166 E++ A + R ++EVL+ ++RPA+ DGGD+ DG V++ + GACSGC + Sbjct: 1 MAENNQATIDRAKVEEVLE-KIRPALRFDGGDVELVDIGEDGTVYVRLMGACSGCAMSLM 59 Query: 167 TLKYGVANILNHFVPEVKDIRTV 189 TLK G+ L +PEVK++ V Sbjct: 60 TLKGGIEQRLKQEIPEVKEVVAV 82 >gi|88809237|ref|ZP_01124746.1| NifU-like protein [Synechococcus sp. WH 7805] gi|88787179|gb|EAR18337.1| NifU-like protein [Synechococcus sp. WH 7805] Length = 81 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + +++VLD +RP + DGG++ +V + ++GAC CPS++ TLK G Sbjct: 4 ETLPLTSENVEKVLDE-LRPFLMADGGNVEVVEIDGPVVKVRLQGACGSCPSSTMTLKMG 62 Query: 172 VANILNHFVPEVKDIRTV 189 + + +PEV ++ V Sbjct: 63 IERKMRETIPEVSEVVQV 80 >gi|330827871|ref|YP_004390823.1| Fe/S biogenesis protein nfuA [Aeromonas veronii B565] gi|328803007|gb|AEB48206.1| Fe/S biogenesis protein nfuA [Aeromonas veronii B565] Length = 192 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 67/180 (37%), Gaps = 16/180 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF E + R+F + PG + G + + +HL P G Sbjct: 4 ISDAAQAHFRKLLEKQPDGTNIRVFVVNPGTQNAECGVSYCPPDAVDPEDQHL--PFSGF 61 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 P + + + D D MGS + D+ +++RI+ VL + V Sbjct: 62 DCMVDPLSAPFLVDATI-DFVTDQMGSQLTLKAPNAKMRKVADDAPLIERIEYVLMSEVN 120 Query: 131 PAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRT 188 P +A GG + D + L G C+GC TLK G+ L P E+ ++ Sbjct: 121 PMLAGHGGKVTLVELTEDKLAILQFGGGCNGCSMVDYTLKEGIEKQLLEKFPGELNGVKD 180 >gi|77361763|ref|YP_341338.1| putative DNA uptake protein [Pseudoalteromonas haloplanktis TAC125] gi|119370612|sp|Q3IJQ5|NFUA_PSEHT RecName: Full=Fe/S biogenesis protein nfuA gi|76876674|emb|CAI87896.1| conserved protein of unknown function [Pseudoalteromonas haloplanktis TAC125] Length = 191 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 13/179 (7%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ + R+F + PG + G + +D + +R G Sbjct: 4 ISETAQAHFAKLLADQAQQTNIRVFVVNPGTSQAECGVSYCP--EDAVEDSDIRLNFNGF 61 Query: 81 IMEHFISGDPIIHNGGLGDMKLD---------DMGSGDFIESDSAVVQRIKEVLDNRVRP 131 P + + + + I D+++ +R++ +L+ V P Sbjct: 62 DGVVDAESAPFLEDAEIDFVTDKMGTQLTLKAPNAKARKISGDASLNERVQHMLETEVNP 121 Query: 132 AVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 +A GG + GI L G C+GC TLK G+ + E+ + + Sbjct: 122 QLANHGGQVSLVEITAAGIAVLQFGGGCNGCSMIDVTLKEGIEKEMIEKFEEITGVADI 180 >gi|328953813|ref|YP_004371147.1| nitrogen-fixing NifU domain-containing protein [Desulfobacca acetoxidans DSM 11109] gi|328454137|gb|AEB09966.1| nitrogen-fixing NifU domain-containing protein [Desulfobacca acetoxidans DSM 11109] Length = 72 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + + +++ L ++RP + RDGGD+ G+V + + GAC GCP + TLK G+ +L Sbjct: 1 MKEAVEKSL-AKIRPMLQRDGGDVELVEVEHGVVKVKLTGACKGCPMSQMTLKNGIERLL 59 Query: 177 NHFVPEVKDIRTV 189 VP + + +V Sbjct: 60 KQEVPGIVSVESV 72 >gi|303245787|ref|ZP_07332070.1| nitrogen-fixing NifU domain protein [Desulfovibrio fructosovorans JJ] gi|302493050|gb|EFL52915.1| nitrogen-fixing NifU domain protein [Desulfovibrio fructosovorans JJ] Length = 73 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + ++++ L ++RP++ DGGD+ GIV + + GAC GCP + TLK G+ I Sbjct: 1 MQEKVEAAL-AKIRPSLQADGGDVELVEVTDGGIVKVRLTGACKGCPMSQMTLKNGIERI 59 Query: 176 LNHFVPEVKDIRTV 189 L VP VK + V Sbjct: 60 LMQSVPGVKAVEAV 73 >gi|323699074|ref|ZP_08110986.1| nitrogen-fixing NifU domain protein [Desulfovibrio sp. ND132] gi|323459006|gb|EGB14871.1| nitrogen-fixing NifU domain protein [Desulfovibrio desulfuricans ND132] Length = 73 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + ++++ VLD +VRP + DGGD+ +GIV + + GAC GCP + TLK G+ I Sbjct: 1 MQKKVEAVLD-KVRPMLQGDGGDVELVEVTDNGIVKVRLTGACKGCPMSQMTLKNGIERI 59 Query: 176 LNHFVPEVKDIRTV 189 + +PEVK + V Sbjct: 60 ILKEIPEVKGVEAV 73 >gi|15603422|ref|NP_246496.1| putative DNA uptake protein [Pasteurella multocida subsp. multocida str. Pm70] gi|51702139|sp|Q9CKP9|NFUA_PASMU RecName: Full=Fe/S biogenesis protein nfuA gi|12721948|gb|AAK03641.1| OrfG [Pasteurella multocida subsp. multocida str. Pm70] Length = 194 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 64/181 (35%), Gaps = 14/181 (7%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 ++ HF + + RIF + PG + G + + ++ Sbjct: 5 MISDAAQAHFRRLLDQQEEGTHIRIFVVNPGTPNAECGVSYCPPNAVEATDTEMQYASFS 64 Query: 80 MIMEHFISGDPIIHNGGLGDMKLD---------DMGSGDFIESDSAVVQRIKEVLDNRVR 130 ++ P + + + + + D+ +++R++ V+ ++ Sbjct: 65 AFVDEIS--LPFLDEAEIDYVTEELGAQLTLKAPNAKMRKVADDAPLLERVEYVIQTQIN 122 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRT 188 P +A GG I DG L G C+GC TLK G+ L P E++ + Sbjct: 123 PQLAGHGGRITLIEITEDGYAILQFGGGCNGCSMVDVTLKDGIEKQLLSLFPGELQGAKD 182 Query: 189 V 189 V Sbjct: 183 V 183 >gi|302392635|ref|YP_003828455.1| nitrogen-fixing NifU domain protein [Acetohalobium arabaticum DSM 5501] gi|302204712|gb|ADL13390.1| nitrogen-fixing NifU domain protein [Acetohalobium arabaticum DSM 5501] Length = 72 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + + ++ LD ++RP++ DGG + +G+V + + GAC GCP + TLK G+ +L Sbjct: 1 MKEEVEAALD-KIRPSLEADGGGVELIDVEEGVVKVKLTGACGGCPMSQMTLKNGIERVL 59 Query: 177 NHFVPEVKDIRTV 189 +PEV+ + +V Sbjct: 60 KEEIPEVEKVESV 72 >gi|242094042|ref|XP_002437511.1| hypothetical protein SORBIDRAFT_10g028390 [Sorghum bicolor] gi|241915734|gb|EER88878.1| hypothetical protein SORBIDRAFT_10g028390 [Sorghum bicolor] Length = 240 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + +++VLD VRP++ DGG++ +V L ++GAC CPS++ TLK G+ L Sbjct: 90 TEENVEKVLDE-VRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRL 148 Query: 177 NHFVPEVKDIRTV 189 +P++ ++ + Sbjct: 149 RDKIPDILEVEQI 161 Score = 37.5 bits (86), Expect = 0.81, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 6/70 (8%) Query: 119 QRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +++VLD +RP ++ GG + +V + + G +G T++ V L Sbjct: 173 DNVEKVLDE-IRPYLSGTGGGSLEQLQIDGYVVKIRISGPAAG----VMTVRVAVTQKLR 227 Query: 178 HFVPEVKDIR 187 +P + ++ Sbjct: 228 EKIPSILAVQ 237 >gi|51892183|ref|YP_074874.1| NifU-like nitrogen fixation protein [Symbiobacterium thermophilum IAM 14863] gi|51855872|dbj|BAD40030.1| NifU-like nitrogen fixation protein [Symbiobacterium thermophilum IAM 14863] Length = 77 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ + +R++ LD +RPA+ DGG++ DG+ + M GAC GCP ++ TLK G+ Sbjct: 2 AEETLFERVERALD-LIRPAIRMDGGEVELVAVEDGVARIRMVGACGGCPMSTMTLKMGI 60 Query: 173 ANILNHFVPEVKDIRTV 189 + VPE++ + V Sbjct: 61 ERAVRQQVPEIRAVEAV 77 >gi|302792717|ref|XP_002978124.1| hypothetical protein SELMODRAFT_108525 [Selaginella moellendorffii] gi|300154145|gb|EFJ20781.1| hypothetical protein SELMODRAFT_108525 [Selaginella moellendorffii] Length = 185 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Query: 100 MKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACS 159 + + + + + ++ VLD VRP + DGG++ + +V L ++GAC Sbjct: 19 AAVATQETAATDDGLALTEENVEMVLDE-VRPYLMSDGGNVALEEIDGLVVKLKLQGACG 77 Query: 160 GCPSASETLKYGVANILNHFVPEVKDIRTV 189 CPS+ T+K G+ L +PE+ + V Sbjct: 78 SCPSSLMTMKMGIEARLKEKIPEIIGVEQV 107 Score = 37.9 bits (87), Expect = 0.72, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDS--AVVQRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIV 150 L + + +G ++++ + + + + + +RP + GG + +V Sbjct: 91 EARLKEKIPEIIGVEQVQDTETGLELTEENVDKILSEIRPYLVGTGGGELTLVKIDGPVV 150 Query: 151 FLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 + + G +G T++ V L +P + ++ Sbjct: 151 KIRIEGPAAG----VMTVRVAVTQKLREKIPMIAAVQ 183 >gi|119471386|ref|ZP_01613858.1| predicted gluconate transport associated protein [Alteromonadales bacterium TW-7] gi|119445662|gb|EAW26946.1| predicted gluconate transport associated protein [Alteromonadales bacterium TW-7] Length = 191 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 61/179 (34%), Gaps = 13/179 (7%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ + R+F + PG + G + +D + +R G Sbjct: 4 ISETAQAHFAKLLADQSQQTNIRVFVVNPGTSQAECGVSYCP--EDAVEDNDIRLNFNGF 61 Query: 81 IMEHFISGDPIIHNGGLGDMKLD---------DMGSGDFIESDSAVVQRIKEVLDNRVRP 131 P + + + I D+++ +R++ +L+ V P Sbjct: 62 DAVVDAESAPFLEEAEIDFVTDKMGTQLTLKAPNAKARKIGDDASLNERVQHMLETEVNP 121 Query: 132 AVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 +A GG + G+ L G C+GC TLK G+ + E+ + + Sbjct: 122 QLANHGGQVSLVEITAAGVAVLQFGGGCNGCSMIDVTLKEGIEKEMIAKFDEITGVADI 180 >gi|300087175|ref|YP_003757697.1| nitrogen-fixing NifU domain-containing protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526908|gb|ADJ25376.1| nitrogen-fixing NifU domain protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 74 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 2/73 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + +++KEVL+ +VRP + DGGD+ DGIV + + G+C+GCP + TLK G+ I Sbjct: 1 MQEKVKEVLE-QVRPNLQADGGDVELVSVSEDGIVTVKLTGSCAGCPMSQMTLKNGIERI 59 Query: 176 LNHFVPEVKDIRT 188 L VPEVK++ + Sbjct: 60 LKREVPEVKEVVS 72 >gi|298528227|ref|ZP_07015631.1| nitrogen-fixing NifU domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511879|gb|EFI35781.1| nitrogen-fixing NifU domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 73 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + ++++EVL+ ++RP++ DGGD+ D +V + ++GAC GCP + TLK G+ + Sbjct: 1 MKEQVQEVLE-KIRPSLQADGGDVELVEVTEDNVVKVQLQGACKGCPMSQMTLKNGIERL 59 Query: 176 LNHFVPEVKDIRTV 189 + +P++K + +V Sbjct: 60 IMQELPQIKSVESV 73 >gi|78224272|ref|YP_386019.1| nitrogen-fixing NifU-like [Geobacter metallireducens GS-15] gi|78195527|gb|ABB33294.1| Nitrogen-fixing NifU-like protein [Geobacter metallireducens GS-15] Length = 74 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 +++ +K+VLD VRPA+ DGGD+ DG+V + + GAC CP ++ TLK G+ Sbjct: 1 MLEEVKKVLDT-VRPALQADGGDVELVEVTEDGVVKVKLVGACGHCPMSTMTLKMGIERT 59 Query: 176 LNHFVPEVKDIRTV 189 L VP VK++ +V Sbjct: 60 LKEKVPGVKEVISV 73 >gi|27467548|ref|NP_764185.1| nitrogen fixation protein NifU [Staphylococcus epidermidis ATCC 12228] gi|57866465|ref|YP_188114.1| NifU domain-containing protein [Staphylococcus epidermidis RP62A] gi|242242226|ref|ZP_04796671.1| NifU family protein [Staphylococcus epidermidis W23144] gi|251810309|ref|ZP_04824782.1| NifU family protein [Staphylococcus epidermidis BCM-HMP0060] gi|293368312|ref|ZP_06614940.1| NifU domain protein [Staphylococcus epidermidis M23864:W2(grey)] gi|27315092|gb|AAO04227.1|AE016746_17 nitrogen fixation protein NifU [Staphylococcus epidermidis ATCC 12228] gi|57637123|gb|AAW53911.1| NifU domain protein [Staphylococcus epidermidis RP62A] gi|242234321|gb|EES36633.1| NifU family protein [Staphylococcus epidermidis W23144] gi|251806191|gb|EES58848.1| NifU family protein [Staphylococcus epidermidis BCM-HMP0060] gi|291317559|gb|EFE57977.1| NifU domain protein [Staphylococcus epidermidis M23864:W2(grey)] gi|319401786|gb|EFV89994.1| nifU-like domain protein [Staphylococcus epidermidis FRI909] gi|329726827|gb|EGG63287.1| NifU-like protein [Staphylococcus epidermidis VCU144] gi|329736812|gb|EGG73077.1| NifU-like protein [Staphylococcus epidermidis VCU028] gi|329737604|gb|EGG73850.1| NifU-like protein [Staphylococcus epidermidis VCU045] Length = 80 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + + ++ EV++ R+RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 4 ENPTMFDQVAEVIE-RLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGI 62 Query: 173 ANILNHFVPEVKDIRTV 189 L+ VP V ++ V Sbjct: 63 ERALHEEVPGVIEVEQV 79 >gi|326534082|dbj|BAJ89391.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 216 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ VLD VRP++ RDGG++ +V L ++GAC CPS++ TLK G+ + L Sbjct: 66 TEENVERVLDE-VRPSLMRDGGNVALHEIDGLVVVLMLQGACGSCPSSTMTLKMGIESRL 124 Query: 177 NHFVPEVKDIRTV 189 +PE+ ++ + Sbjct: 125 RDKIPEILEVEQI 137 Score = 41.7 bits (97), Expect = 0.046, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 40/98 (40%), Gaps = 9/98 (9%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAV---VQRIKEVLDNRVRPAVARDGGD-IVFKGYRDGI 149 L D + + ++++ + + +++VLD +RP ++ GG + + Sbjct: 121 ESRLRDKIPEILEVEQIHDTETGLELNTENVEKVLDE-IRPYLSGTGGGSLDLVQIDGFV 179 Query: 150 VFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 V + + G +G T++ V L +P + + Sbjct: 180 VKIQISGPAAG----VMTVRVAVTQKLREKIPSILAVE 213 >gi|37522446|ref|NP_925823.1| hypothetical protein gsl2877 [Gloeobacter violaceus PCC 7421] gi|35213447|dbj|BAC90818.1| gsl2877 [Gloeobacter violaceus PCC 7421] Length = 85 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 42/82 (51%) Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASET 167 F + + + E++ + +RP + DGG++ IV L ++GAC CPS++ T Sbjct: 3 ETFEDEVLELNRDNVELVLDELRPYLMSDGGNVELVEIEGPIVKLRLQGACGSCPSSTYT 62 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 LK G+ + +P V ++ V Sbjct: 63 LKLGIERRMRELIPAVAEVEQV 84 >gi|86146559|ref|ZP_01064881.1| hypothetical protein MED222_18183 [Vibrio sp. MED222] gi|85835616|gb|EAQ53752.1| hypothetical protein MED222_18183 [Vibrio sp. MED222] Length = 194 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 63/182 (34%), Gaps = 10/182 (5%) Query: 17 IPGQVVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRP 75 + + HF+N + R+F + PG + G + + L Sbjct: 1 MSNITITETAQTHFANLLSQQPEGTNIRVFVVNPGTQNAECGVSYCPTDAIEASDTKLSF 60 Query: 76 PVLGMIME-----HFISGDPIIHNGGLGDMKLDDMGSGDFIE--SDSAVVQRIKEVLDNR 128 ++ + +G + + D+ +++R++ + + Sbjct: 61 EAFSAYVDELSLPFLDEAEIDFVTDKMGSQLTLKAPNAKMRKVSDDATLIERVEYAIQTQ 120 Query: 129 VRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDI 186 V P +A GG + +G ++ G C+GC TLK G+ +L F E+ + Sbjct: 121 VNPQLAGHGGHVSLVEITEEGAAIVAFGGGCNGCSMVDVTLKEGIEKELLQQFEGELTAV 180 Query: 187 RT 188 R Sbjct: 181 RD 182 >gi|255576215|ref|XP_002529001.1| Nitrogen fixation protein nifU, putative [Ricinus communis] gi|223531541|gb|EEF33371.1| Nitrogen fixation protein nifU, putative [Ricinus communis] Length = 226 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ VLD VRP + DGG++ +V L ++GAC CPS+ T+K G+ L Sbjct: 77 TAENVESVLDE-VRPYLIADGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRL 135 Query: 177 NHFVPEVKDIRTV 189 +PE+ + + Sbjct: 136 MEKIPEIVAVEPI 148 Score = 42.5 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 10/96 (10%) Query: 92 IHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVF 151 I + D+ + E + I++VL+ V GG + + I Sbjct: 139 IPEIVAVEPIADEETGLELNE------ENIEKVLEEIRPYLVGAAGGSLELVAIEEPIAK 192 Query: 152 LSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 + + G +G T++ V L +P + ++ Sbjct: 193 IRITGPAAG----VMTVRVAVTQKLREKIPAIAAVQ 224 >gi|255582605|ref|XP_002532084.1| Nitrogen fixation protein nifU, putative [Ricinus communis] gi|223528244|gb|EEF30298.1| Nitrogen fixation protein nifU, putative [Ricinus communis] Length = 220 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + +++VLD VRP + DGG++V +V L ++GAC CPS++ TLK G+ L Sbjct: 70 TEENVEKVLDE-VRPGLMADGGNVVLHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRL 128 Query: 177 NHFVPEVKDIRTV 189 +PE+ + + Sbjct: 129 RDKIPEIMAVEQI 141 Score = 44.8 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 6/72 (8%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + +++VL +RP +A GG + D IV + + G +G T++ + L Sbjct: 153 ENVEKVLAE-IRPYLAGTGGGVLELVQIDDYIVKVRLSGPAAG----VMTVRVALTQKLR 207 Query: 178 HFVPEVKDIRTV 189 +P + ++ + Sbjct: 208 DKIPAIAAVQLI 219 >gi|58177342|pdb|1XHJ|A Chain A, Solution Structure Of The Staphylococcus Epidermidis Protein Se0630. Northest Structural Genomics Consortium Target Ser8 Length = 88 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + + ++ EV++ R+RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 4 ENPTMFDQVAEVIE-RLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGI 62 Query: 173 ANILNHFVPEVKDIRTV 189 L+ VP V ++ V Sbjct: 63 ERALHEEVPGVIEVEQV 79 >gi|319898046|ref|YP_004136243.1| fe/s biogenesis protein nfu [Haemophilus influenzae F3031] gi|317433552|emb|CBY81936.1| Fe/S biogenesis protein nfu [Haemophilus influenzae F3031] Length = 198 Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 62/178 (34%), Gaps = 10/178 (5%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG- 79 + HF + + RIF + PG + G + + ++ Sbjct: 10 ISDAAQAHFRKLLDTQEEGTNIRIFVVNPGTPNAECGVSYCPPNAVEESDIEMKYDTFSA 69 Query: 80 MIME----HFISGDPIIHNGGLGDMKLDDMGSGDFIE--SDSAVVQRIKEVLDNRVRPAV 133 I E + LG + + D+ +++R++ V+ ++ P + Sbjct: 70 FIDEVSLPFLEEAEIDYVTEELGAQLTLKAPNAKMRKVADDAPLIERVEYVIQTQINPQL 129 Query: 134 ARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRTV 189 A GG I DG L G C+GC TLK GV L P E+K + + Sbjct: 130 ANHGGRITLIEITEDGYAVLQFGGGCNGCSMVDVTLKDGVEKQLVSLFPNELKGAKDI 187 >gi|145300948|ref|YP_001143789.1| DNA uptake protein [Aeromonas salmonicida subsp. salmonicida A449] gi|150383444|sp|A4ST19|NFUA_AERS4 RecName: Full=Fe/S biogenesis protein nfuA gi|142853720|gb|ABO92041.1| conserved hypothetical protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 192 Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 68/180 (37%), Gaps = 16/180 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF + + R+F + PG + G + + +HL Sbjct: 4 ISDTAQAHFRKLLKKQPDGTNIRVFVVNPGTQNAECGVSYCPPDAVDPEDQHLPFSGFDC 63 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 +++ + P + + + D D MGS + D+ ++ RI+ VL + V Sbjct: 64 LVDPLSA--PYLVDATI-DFVTDQMGSQLTLKAPNAKMRKVADDAPLIDRIEYVLMSEVN 120 Query: 131 PAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRT 188 P +A GG + D + L G C+GC TLK G+ L P E+ ++ Sbjct: 121 PMLAGHGGKVTLVELTEDKLAILQFGGGCNGCSMVDYTLKEGIEKQLLEKFPGELNGVKD 180 >gi|329122310|ref|ZP_08250898.1| Fe/S-biogenesis protein NfuA [Haemophilus aegyptius ATCC 11116] gi|327473871|gb|EGF19288.1| Fe/S-biogenesis protein NfuA [Haemophilus aegyptius ATCC 11116] Length = 198 Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 10/178 (5%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG- 79 + HF + + RIF + PG+ + G + + ++ Sbjct: 10 ISDAAQAHFRKLLDTQEEGTNIRIFVVNPGMPNAECGVSYCPPNAVEESDIEMKYDTFSA 69 Query: 80 MIME----HFISGDPIIHNGGLGDMKLDDMGSGDFIE--SDSAVVQRIKEVLDNRVRPAV 133 I E + LG + + D+ +++R++ V+ ++ P + Sbjct: 70 FIDEVSLPFLEEAEIDYVTEELGAQLTLKAPNAKMRKVADDAPLIERVEYVIQTQINPQL 129 Query: 134 ARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRTV 189 A GG I DG L G C+GC TLK GV L P E+K + + Sbjct: 130 ANHGGRITLIEITEDGYAVLQFGGGCNGCSMVDVTLKDGVEKQLVSLFPNELKGAKDI 187 >gi|323497032|ref|ZP_08102055.1| Fe/S biogenesis protein NfuA [Vibrio sinaloensis DSM 21326] gi|323317876|gb|EGA70864.1| Fe/S biogenesis protein NfuA [Vibrio sinaloensis DSM 21326] Length = 195 Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 16/181 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+N + R+F + PG + G + + L Sbjct: 6 TITENAQSHFANLLSQQPEGTNIRVFVVNPGTQNAECGVSYCPPEAIESTDTELTYEHFS 65 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ P + + + D D MGS + D+ +++R++ V+ +V Sbjct: 66 AYVDELS--LPFLEDAEI-DFVTDKMGSQLTLKAPNAKMRKVSDDAPLLERVEYVIQTQV 122 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIR 187 P +A GG + G+ +S G C+GC TLK G+ +L F E+ +R Sbjct: 123 NPQLAGHGGHVNLVEITEQGVAIVSFGGGCNGCSMVDVTLKEGIEKELLQQFEGELTAVR 182 Query: 188 T 188 Sbjct: 183 D 183 >gi|88861082|ref|ZP_01135717.1| hypothetical protein PTD2_16836 [Pseudoalteromonas tunicata D2] gi|88817010|gb|EAR26830.1| hypothetical protein PTD2_16836 [Pseudoalteromonas tunicata D2] Length = 191 Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 15/181 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F + PG + G + D + + G Sbjct: 3 TISETAQSHFAKLLADQAEGTNIRVFVVNPGTSKAECGVSYCPP--DAVEETDIHLEFNG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGS----------GDFIESDSAVVQRIKEVLDNRV 129 P + + D D MGS + +++ +R++ ++D V Sbjct: 61 FNAVVDAESAPFLTEAEI-DFVTDKMGSQLTLKAPNAKAKKLSDGASLAERVQHMIDTEV 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P +A GG + +DGI L G C+GC TLK G+ + E+ +R Sbjct: 120 NPQLANHGGQVSLVEITKDGIAVLQFGGGCNGCSMIDVTLKEGIEKEMIAKFDEITGVRD 179 Query: 189 V 189 + Sbjct: 180 I 180 >gi|301064688|ref|ZP_07205077.1| NifU-like protein [delta proteobacterium NaphS2] gi|300441230|gb|EFK05606.1| NifU-like protein [delta proteobacterium NaphS2] Length = 75 Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 2/73 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANI 175 + +++++ L+ +VRP++ DGGD+ +G+V + + GAC GCP + TLK G+ + Sbjct: 3 LREKVQDALE-KVRPSLQADGGDVQLVDVDANGLVKVKLTGACGGCPMSQMTLKMGIEKV 61 Query: 176 LNHFVPEVKDIRT 188 L VPEV + + Sbjct: 62 LKQNVPEVTSVES 74 >gi|297803520|ref|XP_002869644.1| hypothetical protein ARALYDRAFT_492226 [Arabidopsis lyrata subsp. lyrata] gi|297315480|gb|EFH45903.1| hypothetical protein ARALYDRAFT_492226 [Arabidopsis lyrata subsp. lyrata] Length = 238 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ VLD VRP++ DGG++ +V L ++GAC CPS+S TLK G+ + L Sbjct: 87 TEENVERVLDE-VRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRL 145 Query: 177 NHFVPEVKDIRT 188 +PE+ + Sbjct: 146 RDKIPEIMSVEQ 157 Score = 42.9 bits (100), Expect = 0.021, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 8/71 (11%) Query: 119 QRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGACSGCPSAS-ETLKYGVANIL 176 + I++VL + +RP ++ GG + IV + + G P+A T++ + L Sbjct: 171 ENIEKVL-SELRPYLSGTGGGGLELVEIDGYIVKVRLSG-----PAAGVMTVRVALTQKL 224 Query: 177 NHFVPEVKDIR 187 +P + ++ Sbjct: 225 RENIPSIGAVQ 235 >gi|68249033|ref|YP_248145.1| putative DNA uptake protein [Haemophilus influenzae 86-028NP] gi|145628803|ref|ZP_01784603.1| conserved hypothetical 21.9 kD protein in locus involved in transformation [Haemophilus influenzae 22.1-21] gi|145636298|ref|ZP_01791967.1| predicted gluconate transport-associated protein [Haemophilus influenzae PittHH] gi|145638657|ref|ZP_01794266.1| predicted gluconate transport-associated protein [Haemophilus influenzae PittII] gi|145640398|ref|ZP_01795982.1| conserved hypothetical 21.9 kD protein in locus involved in transformation [Haemophilus influenzae R3021] gi|148825287|ref|YP_001290040.1| putative DNA uptake protein [Haemophilus influenzae PittEE] gi|148827630|ref|YP_001292383.1| putative DNA uptake protein [Haemophilus influenzae PittGG] gi|319775640|ref|YP_004138128.1| Fe/S biogenesis protein nfu [Haemophilus influenzae F3047] gi|81336556|sp|Q4QNB2|NFUA_HAEI8 RecName: Full=Fe/S biogenesis protein nfuA gi|166990525|sp|A5UA56|NFUA_HAEIE RecName: Full=Fe/S biogenesis protein nfuA gi|166990526|sp|A5UGU4|NFUA_HAEIG RecName: Full=Fe/S biogenesis protein nfuA gi|68057232|gb|AAX87485.1| conserved hypothetical 21.9 kD protein in locus involved in transformation [Haemophilus influenzae 86-028NP] gi|144979273|gb|EDJ88959.1| conserved hypothetical 21.9 kD protein in locus involved in transformation [Haemophilus influenzae 22.1-21] gi|145270463|gb|EDK10397.1| predicted gluconate transport-associated protein [Haemophilus influenzae PittHH] gi|145272252|gb|EDK12160.1| predicted gluconate transport-associated protein [Haemophilus influenzae PittII] gi|145274984|gb|EDK14846.1| conserved hypothetical 21.9 kD protein in locus involved in transformation [Haemophilus influenzae 22.4-21] gi|148715447|gb|ABQ97657.1| predicted gluconate transport-associated protein [Haemophilus influenzae PittEE] gi|148718872|gb|ABQ99999.1| conserved hypothetical 21.9 kD protein in locus involved in transformation [Haemophilus influenzae PittGG] gi|301169133|emb|CBW28730.1| predicted gluconate transport associated protein [Haemophilus influenzae 10810] gi|309750151|gb|ADO80135.1| Fe/S biogenesis protein NfuA [Haemophilus influenzae R2866] gi|317450231|emb|CBY86447.1| Fe/S biogenesis protein nfu [Haemophilus influenzae F3047] Length = 198 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 62/178 (34%), Gaps = 10/178 (5%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG- 79 + HF + + RIF + PG + G + + ++ Sbjct: 10 ISDAAQAHFRKLLDTQEEGTNIRIFVVNPGTPNAECGVSYCPPNAVEESDIEMKYNTFSA 69 Query: 80 MIME----HFISGDPIIHNGGLGDMKLDDMGSGDFIE--SDSAVVQRIKEVLDNRVRPAV 133 I E + LG + + D+ +++R++ V+ ++ P + Sbjct: 70 FIDEVSLPFLEEAEIDYVTEELGAQLTLKAPNAKMRKVADDAPLIERVEYVIQTQINPQL 129 Query: 134 ARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRTV 189 A GG I DG L G C+GC TLK GV L P E+K + + Sbjct: 130 ANHGGRITLIEITEDGYAVLQFGGGCNGCSMVDVTLKDGVEKQLVSLFPNELKGAKDI 187 >gi|308272822|emb|CBX29426.1| hypothetical protein N47_J04070 [uncultured Desulfobacterium sp.] Length = 61 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 +RP + +DGGD+ +GIV + ++GAC+GCP + TLK G+ +L VP VK + Sbjct: 1 MRPMLQKDGGDVEIVDVSEGIVKVRLQGACAGCPMSQMTLKNGIEKLLMQDVPGVKSVVA 60 Query: 189 V 189 V Sbjct: 61 V 61 >gi|57651628|ref|YP_185809.1| NifU domain-containing protein [Staphylococcus aureus subsp. aureus COL] gi|57285814|gb|AAW37908.1| NifU domain protein [Staphylococcus aureus subsp. aureus COL] Length = 73 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ EV++ R+RP + RDGGD DGIV L + GAC CPS++ TLK G+ L Sbjct: 1 MFDQVAEVIE-RLRPFLLRDGGDCSLIDVEDGIVKLQLHGACGTCPSSTITLKAGIERAL 59 Query: 177 NHFVPEVKDIRTV 189 + VP V ++ V Sbjct: 60 HEEVPGVIEVEQV 72 >gi|149000|gb|AAA25015.1| The predicted molecular weight and pI of ORF G are 21.8 Kd and 4.3 respectively; ORF G; putative [Haemophilus influenzae] Length = 198 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 10/178 (5%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG- 79 + HF + + RIF++ PG + G + + ++ Sbjct: 10 ISDAAQAHFRKLLDTQEEGTHIRIFAVNPGTPNAECGVSYCPPNAVEESDIEMKYNTFSA 69 Query: 80 MIME----HFISGDPIIHNGGLGDMKLDDMGSGDFIE--SDSAVVQRIKEVLDNRVRPAV 133 I E + LG + + D+ +++R++ V+ ++ P + Sbjct: 70 FIDEVSLPFLEEAEIDYVTEELGAQLTLKAPNAKMRKVADDAPLIERVEYVIQTQINPQL 129 Query: 134 ARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRTV 189 A GG I DG L G C+GC TLK GV L P E+K + + Sbjct: 130 ANHGGRITLIEITEDGYAVLQFGGGCNGCSMVDVTLKDGVEKQLVSLFPNELKGAKDI 187 >gi|120554445|ref|YP_958796.1| HesB/YadR/YfhF-family protein [Marinobacter aquaeolei VT8] gi|120324294|gb|ABM18609.1| HesB/YadR/YfhF-family protein [Marinobacter aquaeolei VT8] Length = 195 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 61/161 (37%), Gaps = 13/161 (8%) Query: 40 PLASRIFS-IPGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLG 98 + RIF PG + + + E + + ++H + P + + + Sbjct: 25 GMGVRIFVTQPGTRNAETCLAYCPPNEVVPTDEQVNLEKFTLYLDH--NSVPFLEDAYVD 82 Query: 99 DMKLDDMGSGDFIE---------SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDG 148 K G D+ + +R+ VL + + P +A GGD+ + Sbjct: 83 YSKDQMGGQLTIKAPNAKVPQVADDAPLPERVNYVLASEINPNLAAHGGDVSLVEIVDES 142 Query: 149 IVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 + L G C GC + S TLK GV L VPE+ +R V Sbjct: 143 VAVLRFGGGCQGCSAVSLTLKQGVEKTLKERVPEISAVRDV 183 >gi|317154501|ref|YP_004122549.1| nitrogen-fixing NifU domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944752|gb|ADU63803.1| nitrogen-fixing NifU domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 74 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANI 175 + +++ +VLD +VRPA+ DGGD+ D GIV + + GAC GCP + TLK G+ I Sbjct: 1 MREKVMKVLD-KVRPALQGDGGDVELVDITDKGIVQVRLTGACKGCPMSQMTLKNGIERI 59 Query: 176 LNHFVPEVKDIRTV 189 + +PE+K + V Sbjct: 60 ILKEIPEIKGVEAV 73 >gi|315128008|ref|YP_004070011.1| DNA uptake protein [Pseudoalteromonas sp. SM9913] gi|315016522|gb|ADT69860.1| putative DNA uptake protein [Pseudoalteromonas sp. SM9913] Length = 191 Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 61/179 (34%), Gaps = 13/179 (7%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ + R+F + PG + G + +D + +R G Sbjct: 4 ISETAQAHFAKLLADQSQQTNIRVFVVNPGTSQAECGVSYCP--EDAVEESDIRLNFNGF 61 Query: 81 IMEHFISGDPIIHNGGLGDMKLD---------DMGSGDFIESDSAVVQRIKEVLDNRVRP 131 P + + + + D+++ +R++ +L+ V P Sbjct: 62 DAVVDAESAPFLAEAEIDFVTDKMGTQLTLKAPNAKARKLGEDASLNERVQHMLETEVNP 121 Query: 132 AVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 +A GG + GI L G C+GC TLK G+ + E+ + + Sbjct: 122 QLANHGGQVSLVEITAAGIAVLQFGGGCNGCSMIDVTLKEGIEKEMIAKFDEITGVADI 180 >gi|85859635|ref|YP_461837.1| nifU-like domain-containing protein [Syntrophus aciditrophicus SB] gi|85722726|gb|ABC77669.1| nifU-like domain protein [Syntrophus aciditrophicus SB] Length = 73 Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + +++E +D +VRP + DGGD+ DG+V + + GAC GC + TLK G+ Sbjct: 1 MKDKVQEAID-QVRPGLQADGGDVELVDVTEDGVVKVRLVGACRGCAMSQMTLKMGIERF 59 Query: 176 LNHFVPEVKDIRTV 189 L +PEVK++ V Sbjct: 60 LKERIPEVKEVVAV 73 >gi|115469688|ref|NP_001058443.1| Os06g0694500 [Oryza sativa Japonica Group] gi|53791826|dbj|BAD53892.1| putative Nuclear-encoded plastid gene, NifU1 [Oryza sativa Japonica Group] gi|53792847|dbj|BAD53880.1| putative Nuclear-encoded plastid gene, NifU1 [Oryza sativa Japonica Group] gi|113596483|dbj|BAF20357.1| Os06g0694500 [Oryza sativa Japonica Group] gi|215678926|dbj|BAG96356.1| unnamed protein product [Oryza sativa Japonica Group] gi|215695250|dbj|BAG90441.1| unnamed protein product [Oryza sativa Japonica Group] gi|218198813|gb|EEC81240.1| hypothetical protein OsI_24300 [Oryza sativa Indica Group] gi|222636145|gb|EEE66277.1| hypothetical protein OsJ_22478 [Oryza sativa Japonica Group] Length = 219 Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ VLD +VRP++ DGG++ +V L ++GAC CPS++ TLK G+ L Sbjct: 69 TEENVEMVLD-QVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRL 127 Query: 177 NHFVPEVKDIRTV 189 +PE+ + + Sbjct: 128 RDKIPEILAVEQI 140 Score = 44.4 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 6/70 (8%) Query: 119 QRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + +VLD +RP ++ GG + + +V + + G +G T++ V L Sbjct: 152 DNVDKVLDE-IRPYLSGTGGGSLDLVQIDESVVKVRLTGPAAG----VMTVRVAVTQKLR 206 Query: 178 HFVPEVKDIR 187 +P + ++ Sbjct: 207 EKIPSILAVQ 216 >gi|62734078|gb|AAX96187.1| Similar to seven transmembrane protein Mlo4 [Oryza sativa Japonica Group] Length = 980 Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ VLD VRP + DGG++ +V L ++GAC CP++ T+K G+ L Sbjct: 571 TAENVEIVLDE-VRPYLMADGGNVALHEIDGNVVRLKLQGACGSCPASVTTMKMGIERRL 629 Query: 177 NHFVPEVKDIRTV 189 +PE+ + + Sbjct: 630 MEKIPEIVAVEPI 642 Score = 47.9 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 8/71 (11%) Query: 119 QRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGACSGCPSAS-ETLKYGVANIL 176 + I++VLD +RP ++ GG + F + IV + + G P+A T++ + L Sbjct: 654 ENIEKVLDE-IRPYLSGTGGGELEFVAIEEPIVKVRLTG-----PAAGVMTVRVALTQKL 707 Query: 177 NHFVPEVKDIR 187 +P++ ++ Sbjct: 708 REKIPKIAAVQ 718 >gi|145632678|ref|ZP_01788412.1| conserved hypothetical 21.9 kD protein in locus involved in transformation [Haemophilus influenzae 3655] gi|145634570|ref|ZP_01790279.1| predicted gluconate transport-associated protein [Haemophilus influenzae PittAA] gi|229844407|ref|ZP_04464547.1| putative DNA uptake protein [Haemophilus influenzae 6P18H1] gi|229846519|ref|ZP_04466627.1| putative DNA uptake protein [Haemophilus influenzae 7P49H1] gi|144986873|gb|EDJ93425.1| conserved hypothetical 21.9 kD protein in locus involved in transformation [Haemophilus influenzae 3655] gi|145268115|gb|EDK08110.1| predicted gluconate transport-associated protein [Haemophilus influenzae PittAA] gi|229810612|gb|EEP46330.1| putative DNA uptake protein [Haemophilus influenzae 7P49H1] gi|229812656|gb|EEP48345.1| putative DNA uptake protein [Haemophilus influenzae 6P18H1] gi|309972410|gb|ADO95611.1| Fe/S biogenesis protein NfuA [Haemophilus influenzae R2846] Length = 198 Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 10/178 (5%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG- 79 + +HF + + RIF + PG + G + + ++ Sbjct: 10 ISDAAQVHFRKLLDTQEEGTNIRIFVVNPGTPNAECGVSYCPPNAVEESDIEMKYNTFSA 69 Query: 80 MIME----HFISGDPIIHNGGLGDMKLDDMGSGDFIE--SDSAVVQRIKEVLDNRVRPAV 133 I E + LG + + D+ +++R++ V+ ++ P + Sbjct: 70 FIDEVSLPFLEEAEIDYVTEELGAQLTLKAPNAKMRKVADDAPLIERVEYVIQTQINPQL 129 Query: 134 ARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRTV 189 A GG I DG L G C+GC TLK GV L P E+K + + Sbjct: 130 ANHGGRITLIEITEDGYAVLQFGGGCNGCSMVDVTLKDGVEKQLVSLFPNELKGAKDI 187 >gi|167855552|ref|ZP_02478314.1| predicted gluconate transport-associated protein [Haemophilus parasuis 29755] gi|167853353|gb|EDS24605.1| predicted gluconate transport-associated protein [Haemophilus parasuis 29755] Length = 193 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 16/174 (9%) Query: 29 HFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFIS 87 HF + + RIF + PG S G + V + ++ ++ Sbjct: 12 HFRKLLDQQEEGTNIRIFVVNPGTPSAECGVSYCPVNAVEETDTEIKFEQFSAFIDEIS- 70 Query: 88 GDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVRPAVARDG 137 P + + + D D MGS + D+ ++R+ V+ ++ P +A G Sbjct: 71 -LPFLEDAEI-DYVTDPMGSQLTLKAPNAKMKKVADDAPFIERLDYVIQTQINPQLASHG 128 Query: 138 GDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRTV 189 G + D L G C+GC TLK G+ L P E+ ++ V Sbjct: 129 GRVTLIEVTEDKYAVLQFGGGCNGCSMVDVTLKEGIEKQLLALFPEELVGVKDV 182 >gi|84386342|ref|ZP_00989370.1| hypothetical protein V12B01_02495 [Vibrio splendidus 12B01] gi|84378766|gb|EAP95621.1| hypothetical protein V12B01_02495 [Vibrio splendidus 12B01] Length = 194 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 63/182 (34%), Gaps = 10/182 (5%) Query: 17 IPGQVVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRP 75 + + HF+N + R+F + PG + G + + L Sbjct: 1 MSNITITETAQTHFANLLSQQPEGTNIRVFVVNPGTQNAECGVSYCPTDAIEASDTKLSF 60 Query: 76 PVLGMIME-----HFISGDPIIHNGGLGDMKLDDMGSGDFIE--SDSAVVQRIKEVLDNR 128 ++ + +G + + D+ +++R++ + + Sbjct: 61 DAFSAYVDELSLPFLDEAEIDFVTDKMGSQLTLKAPNAKMRKVSDDATLIERVEYAIQTQ 120 Query: 129 VRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDI 186 V P +A GG + +G ++ G C+GC TLK G+ +L F E+ + Sbjct: 121 VNPQLAGHGGHVSLVEITEEGAAIVAFGGGCNGCSMVDVTLKEGIEKELLQQFEGELTAV 180 Query: 187 RT 188 R Sbjct: 181 RD 182 >gi|4538920|emb|CAB39656.1| nitrogen fixation like protein [Arabidopsis thaliana] gi|7269442|emb|CAB79446.1| nitrogen fixation like protein [Arabidopsis thaliana] Length = 224 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ VLD VRP++ DGG++ +V L ++GAC CPS+S TLK G+ + L Sbjct: 73 TEENVERVLDE-VRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRL 131 Query: 177 NHFVPEVKDIRT 188 +PE+ + Sbjct: 132 RDKIPEIMSVEQ 143 Score = 42.9 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 8/71 (11%) Query: 119 QRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGACSGCPSAS-ETLKYGVANIL 176 + I++VL + +RP ++ GG + +V + + G P+A T++ + L Sbjct: 157 ENIEKVL-SELRPYLSGTGGGGLELVEIDGYVVKVRLTG-----PAAGVMTVRVALTQKL 210 Query: 177 NHFVPEVKDIR 187 +P + ++ Sbjct: 211 RETIPSIGAVQ 221 >gi|118487917|gb|ABK95780.1| unknown [Populus trichocarpa] Length = 224 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + +++VLD VRP + RDGG++ +V L ++GAC CPS+S TLK G+ L Sbjct: 74 TEENVEKVLDE-VRPGLMRDGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIETKL 132 Query: 177 NHFVPEVKDIRTV 189 +PE+ D+ + Sbjct: 133 RDKIPEIMDVEQI 145 Score = 45.2 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 5/91 (5%) Query: 100 MKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGAC 158 ++ D+ E+ + + E +RP +A GG + D +V + + G Sbjct: 137 PEIMDVEQIMDTETGLELNEENVEKALAEIRPYLAGTGGGVLELVQINDYVVKVRLSGPA 196 Query: 159 SGCPSASETLKYGVANILNHFVPEVKDIRTV 189 +G T++ + L +P + ++ + Sbjct: 197 AG----VMTVRVALTQKLRETIPAIAAVQLI 223 >gi|18416645|ref|NP_567735.1| NFU3; structural molecule [Arabidopsis thaliana] gi|75147908|sp|Q84RQ7|NIFU3_ARATH RecName: Full=NifU-like protein 3, chloroplastic; Short=AtCNfu3; Short=AtCnfU-IVa; Flags: Precursor gi|28207820|emb|CAD55560.1| NFU3 protein [Arabidopsis thaliana] gi|88196759|gb|ABD43022.1| At4g25910 [Arabidopsis thaliana] gi|222423670|dbj|BAH19802.1| AT4G25910 [Arabidopsis thaliana] gi|332659732|gb|AEE85132.1| NifU-like protein 3 [Arabidopsis thaliana] Length = 236 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ VLD VRP++ DGG++ +V L ++GAC CPS+S TLK G+ + L Sbjct: 85 TEENVERVLDE-VRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRL 143 Query: 177 NHFVPEVKDIRT 188 +PE+ + Sbjct: 144 RDKIPEIMSVEQ 155 Score = 42.9 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 6/70 (8%) Query: 119 QRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + I++VL + +RP ++ GG + +V + + G +G T++ + L Sbjct: 169 ENIEKVL-SELRPYLSGTGGGGLELVEIDGYVVKVRLTGPAAG----VMTVRVALTQKLR 223 Query: 178 HFVPEVKDIR 187 +P + ++ Sbjct: 224 ETIPSIGAVQ 233 >gi|308070638|ref|YP_003872243.1| thioredoxin-like protein [Paenibacillus polymyxa E681] gi|305859917|gb|ADM71705.1| Thioredoxin-like protein [Paenibacillus polymyxa E681] Length = 81 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 2/79 (2%) Query: 113 SDSAVVQRIKEVLD--NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 S++ VQ EV D +++RP + RDGGD+ DGIV L + GAC CPS++ TLK Sbjct: 2 SETQSVQMYDEVADVLDKLRPFLQRDGGDVELVDVEDGIVKLKLVGACGSCPSSTITLKA 61 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ L V V+++ V Sbjct: 62 GIERALLEEVDGVQEVVQV 80 >gi|222054851|ref|YP_002537213.1| nitrogen-fixing NifU domain protein [Geobacter sp. FRC-32] gi|221564140|gb|ACM20112.1| nitrogen-fixing NifU domain protein [Geobacter sp. FRC-32] Length = 73 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 +++ +K+VLD +RP + DGGD+ DG+V + + GAC CP ++ TLK G+ Sbjct: 1 MIEDVKKVLDT-IRPNLQADGGDVELVEVGEDGVVKVKLVGACGHCPMSTMTLKMGIERT 59 Query: 176 LNHFVPEVKDIRTV 189 L VP VK++ +V Sbjct: 60 LKEKVPGVKEVISV 73 >gi|219871269|ref|YP_002475644.1| putative DNA uptake protein [Haemophilus parasuis SH0165] gi|219691473|gb|ACL32696.1| putative DNA uptake protein, cytoplasmic protein [Haemophilus parasuis SH0165] Length = 194 Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 16/174 (9%) Query: 29 HFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFIS 87 HF + + RIF + PG S G + V + ++ ++ Sbjct: 13 HFRKLLDQQEEGTNIRIFVVNPGTPSAECGVSYCPVNAVEETDTEIKFEQFSAFIDEIS- 71 Query: 88 GDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVRPAVARDG 137 P + + + D D MGS + D+ ++R+ V+ +V P +A G Sbjct: 72 -LPFLEDAEI-DYVTDPMGSQLTLKAPNAKMKKVADDAPFIERLDYVIQTQVNPQLASHG 129 Query: 138 GDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRTV 189 G + D L G C+GC TLK G+ L P E+ ++ V Sbjct: 130 GRVTLIEVTEDKYAVLQFGGGCNGCSMVDVTLKEGIEKQLLALFPEELVGVKDV 183 >gi|148263012|ref|YP_001229718.1| NifU domain-containing protein [Geobacter uraniireducens Rf4] gi|146396512|gb|ABQ25145.1| nitrogen-fixing NifU domain protein [Geobacter uraniireducens Rf4] Length = 73 Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 +++ +K+VLD +RP + DGGD+ DG+V + + GAC CP ++ TLK G+ Sbjct: 1 MIEEVKKVLD-LIRPNLQADGGDVELVEVTEDGVVKVKLVGACGHCPMSTMTLKMGIERT 59 Query: 176 LNHFVPEVKDIRTV 189 L VP VK++ +V Sbjct: 60 LKEKVPGVKEVISV 73 >gi|21554503|gb|AAM63593.1| nitrogen fixation like protein [Arabidopsis thaliana] Length = 236 Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ VLD VRP++ DGG++ +V L ++GAC CPS+S TLK G+ + L Sbjct: 85 TEENVERVLDE-VRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRL 143 Query: 177 NHFVPEVKDIRT 188 +PE+ + Sbjct: 144 RDKIPEIMSVEQ 155 Score = 42.5 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 6/70 (8%) Query: 119 QRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + I++VL + +RP ++ GG + +V + + G +G T++ + L Sbjct: 169 ENIEKVL-SELRPYLSGTGGGGLELVEIDGYVVKVRLTGPAAG----VMTVRVALTQKLR 223 Query: 178 HFVPEVKDIR 187 +P + ++ Sbjct: 224 ETIPSIGAVQ 233 >gi|291287157|ref|YP_003503973.1| nitrogen-fixing NifU domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290884317|gb|ADD68017.1| nitrogen-fixing NifU domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 75 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + QR++EVLD +VRP + DGGDI DGIV + + GAC CP ++ TLK+GV Sbjct: 3 LKQRVEEVLD-QVRPTLQADGGDIELLDVSEDGIVKVQLTGACGSCPFSTMTLKHGVEAR 61 Query: 176 LNHFVPEVKDIRTV 189 L +PEVK++ ++ Sbjct: 62 LKDMIPEVKEVLSI 75 >gi|167037171|ref|YP_001664749.1| NifU domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040690|ref|YP_001663675.1| NifU domain-containing protein [Thermoanaerobacter sp. X514] gi|256751269|ref|ZP_05492149.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|300914731|ref|ZP_07132047.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter sp. X561] gi|307724035|ref|YP_003903786.1| nitrogen-fixing NifU domain-containing protein [Thermoanaerobacter sp. X513] gi|320115589|ref|YP_004185748.1| nitrogen-fixing NifU domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854930|gb|ABY93339.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter sp. X514] gi|166856005|gb|ABY94413.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749824|gb|EEU62848.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|300889666|gb|EFK84812.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter sp. X561] gi|307581096|gb|ADN54495.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter sp. X513] gi|319928680|gb|ADV79365.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 73 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + +R++EVL+ +RP++ DGGD+ DGIV + + GAC GCP A+ TLK G+ Sbjct: 1 MRERVEEVLE-LLRPSLQADGGDVELIDVTEDGIVKVRLTGACGGCPFATLTLKEGIERA 59 Query: 176 LNHFVPEVKDIRTV 189 + +PEVK++ V Sbjct: 60 IKEEIPEVKEVIAV 73 >gi|39995588|ref|NP_951539.1| NifU-like domain-containing protein [Geobacter sulfurreducens PCA] gi|39982351|gb|AAR33812.1| NifU-like domain protein [Geobacter sulfurreducens PCA] gi|298504607|gb|ADI83330.1| thioredoxin/NifU-like domain protein [Geobacter sulfurreducens KN400] Length = 74 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 +++ +K+VLD VRPA+ DGGD+ DG+V + + GAC CP ++ TLK G+ Sbjct: 1 MLEDVKKVLD-LVRPALQADGGDVELVEVTEDGVVKVKLVGACGHCPMSTMTLKMGIERT 59 Query: 176 LNHFVPEVKDIRTV 189 L VP VK++ +V Sbjct: 60 LKEKVPGVKEVVSV 73 >gi|73663148|ref|YP_301929.1| hypothetical protein SSP1839 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495663|dbj|BAE18984.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 80 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + + ++ EV++ ++RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 4 ENVTMFDQVAEVIE-KLRPFLLRDGGDCSLVDVEDGIVKLQLHGACGTCPSSTITLKAGI 62 Query: 173 ANILNHFVPEVKDIRTV 189 L+ VP V ++ V Sbjct: 63 ERALHEEVPGVIEVEQV 79 >gi|229816700|ref|ZP_04446988.1| hypothetical protein COLINT_03748 [Collinsella intestinalis DSM 13280] gi|229807752|gb|EEP43566.1| hypothetical protein COLINT_03748 [Collinsella intestinalis DSM 13280] Length = 98 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 2/69 (2%) Query: 122 KEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 KEVL+ ++RP + DGGD+ + G DG+V L ++GAC+GCP +S TL GV IL V Sbjct: 14 KEVLE-QIRPNLQADGGDMEYIGVTEDGVVKLELQGACAGCPMSSLTLSMGVERILKEHV 72 Query: 181 PEVKDIRTV 189 P V + V Sbjct: 73 PGVTRVEQV 81 >gi|52426287|ref|YP_089424.1| putative DNA uptake protein [Mannheimia succiniciproducens MBEL55E] gi|81386480|sp|Q65QC1|NFUA_MANSM RecName: Full=Fe/S biogenesis protein nfuA gi|52308339|gb|AAU38839.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 194 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 62/173 (35%), Gaps = 14/173 (8%) Query: 29 HFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFIS 87 HF + + RIF + PG + G + + ++ ++ Sbjct: 13 HFRKLLDQQEEGTNIRIFVVNPGTPNAECGVSYCPPNAVEATDTEMKYATFSAFVDEVS- 71 Query: 88 GDPIIHNGGLGDMKLD---------DMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGG 138 P + + + + + + D+ +++R+ V+ ++ P +A GG Sbjct: 72 -LPFLEDAEIDYVTEELGTQLTLKAPNAKMRKVADDAPLIERVDYVIQTQINPQLASHGG 130 Query: 139 DIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNH-FVPEVKDIRTV 189 I +G L G C+GC TLK GV L F E+K + + Sbjct: 131 RITLVEITDEGYAILQFGGGCNGCSMVDVTLKDGVEKQLVELFAGELKGAKDI 183 >gi|16272381|ref|NP_438594.1| putative DNA uptake protein [Haemophilus influenzae Rd KW20] gi|260580504|ref|ZP_05848332.1| Fe/S biogenesis protein nfuA [Haemophilus influenzae RdAW] gi|1176271|sp|P31774|NFUA_HAEIN RecName: Full=Fe/S biogenesis protein nfuA gi|148877|gb|AAA24950.1| ORF 3 [Haemophilus influenzae] gi|1573408|gb|AAC22092.1| orfG protein [Haemophilus influenzae Rd KW20] gi|260092846|gb|EEW76781.1| Fe/S biogenesis protein nfuA [Haemophilus influenzae RdAW] Length = 198 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 62/178 (34%), Gaps = 10/178 (5%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG- 79 + HF + + RIF + PG + G + + ++ Sbjct: 10 ISDAAQAHFRKLLDTQEEGTHIRIFVVNPGTPNAECGVSYCPPNAVEESDIEMKYNTFSA 69 Query: 80 MIME----HFISGDPIIHNGGLGDMKLDDMGSGDFIE--SDSAVVQRIKEVLDNRVRPAV 133 I E + LG + + D+ +++R++ V+ ++ P + Sbjct: 70 FIDEVSLPFLEEAEIDYVTEELGAQLTLKAPNAKMRKVADDAPLIERVEYVIQTQINPQL 129 Query: 134 ARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRTV 189 A GG I DG L G C+GC TLK GV L P E+K + + Sbjct: 130 ANHGGRITLIEITEDGYAVLQFGGGCNGCSMVDVTLKDGVEKQLVSLFPNELKGAKDI 187 >gi|332533247|ref|ZP_08409114.1| hypothetical protein PH505_an00610 [Pseudoalteromonas haloplanktis ANT/505] gi|332037326|gb|EGI73781.1| hypothetical protein PH505_an00610 [Pseudoalteromonas haloplanktis ANT/505] Length = 191 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 13/179 (7%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ + R+F + PG + G + +D + +R G Sbjct: 4 ISETAQAHFAKLLADQSQQTNIRVFVVNPGSSQAECGVSYCP--EDAVEASDIRLNFNGF 61 Query: 81 IMEHFISGDPIIHNGGLGDMKLD---------DMGSGDFIESDSAVVQRIKEVLDNRVRP 131 P + + + I D+++ +R++ +L+ V P Sbjct: 62 DAVVDAESAPFLEEAEIDFVTDKMGTQLTLKAPNAKARKIGDDASLNERVQHMLETEVNP 121 Query: 132 AVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 +A GG + GI L G C+GC TLK G+ + E+ + + Sbjct: 122 QLANHGGQVSLVEITAAGIAILQFGGGCNGCSMIDVTLKEGIEKEMIAKFEEITGVADI 180 >gi|258620406|ref|ZP_05715444.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258624640|ref|ZP_05719576.1| Fe/S biogenesis protein nfuA [Vibrio mimicus VM603] gi|262166729|ref|ZP_06034466.1| protein gntY [Vibrio mimicus VM223] gi|262170348|ref|ZP_06038026.1| protein gntY [Vibrio mimicus MB-451] gi|258583104|gb|EEW07917.1| Fe/S biogenesis protein nfuA [Vibrio mimicus VM603] gi|258587285|gb|EEW11996.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|261891424|gb|EEY37410.1| protein gntY [Vibrio mimicus MB-451] gi|262026445|gb|EEY45113.1| protein gntY [Vibrio mimicus VM223] Length = 195 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 65/181 (35%), Gaps = 16/181 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F + PG + G + + + P G Sbjct: 6 TITESAQSHFAKLLAQQPEGTNIRVFVVNPGTQNAECGVSYCPP--EAVEATDTEYPFSG 63 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 P + + D D MGS + D+ +++R++ L +V Sbjct: 64 FSAYVDELSLPFLEEAVI-DFVTDKMGSQLTLKAPNAKMRKVADDAPLMERVEYALQTQV 122 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIR 187 P +A GG + DG+ + G C+GC TLK G+ +L F E+ +R Sbjct: 123 NPQLAGHGGHVSLISISDDGVALVQFGGGCNGCSMVDVTLKEGIEKELLAQFAGELTAVR 182 Query: 188 T 188 Sbjct: 183 D 183 >gi|327485189|gb|AEA79596.1| NfuA Fe-S protein maturation [Vibrio cholerae LMA3894-4] Length = 195 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 65/181 (35%), Gaps = 16/181 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F + PG + G + + + P G Sbjct: 6 TITESAQSHFAKLLAQQPEGTNIRVFVVNPGTQNAECGVSYCPP--EAVEATDTEYPFSG 63 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 P + + D D MGS + D+ +++R++ L +V Sbjct: 64 FSAYVDELSLPFLEEAVI-DFVTDKMGSQLTLKAPNAKMRKVSDDAPLMERVEYALQTQV 122 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIR 187 P +A GG + DG+ + G C+GC TLK G+ +L F E+ +R Sbjct: 123 NPQLAGHGGHVSLISISDDGVALVQFGGGCNGCSMVDVTLKEGIEKELLAQFAGELTAVR 182 Query: 188 T 188 Sbjct: 183 D 183 >gi|261409236|ref|YP_003245477.1| nitrogen-fixing NifU domain-containing protein [Paenibacillus sp. Y412MC10] gi|315649387|ref|ZP_07902475.1| nitrogen-fixing NifU domain protein [Paenibacillus vortex V453] gi|329926903|ref|ZP_08281306.1| NifU-like protein [Paenibacillus sp. HGF5] gi|261285699|gb|ACX67670.1| nitrogen-fixing NifU domain protein [Paenibacillus sp. Y412MC10] gi|315275163|gb|EFU38533.1| nitrogen-fixing NifU domain protein [Paenibacillus vortex V453] gi|328938890|gb|EGG35263.1| NifU-like protein [Paenibacillus sp. HGF5] Length = 81 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + + V + EVLD ++RP + RDGGD+ DGIV L + GAC CPS++ TLK G+ Sbjct: 5 TQTTVYDEVAEVLD-KLRPFLQRDGGDVELVDVEDGIVKLKLMGACGSCPSSTITLKAGI 63 Query: 173 ANILNHFVPEVKDIRTV 189 L V ++++ V Sbjct: 64 ERALVEEVEGIQEVVQV 80 >gi|313902071|ref|ZP_07835484.1| nitrogen-fixing NifU domain protein [Thermaerobacter subterraneus DSM 13965] gi|313467680|gb|EFR63181.1| nitrogen-fixing NifU domain protein [Thermaerobacter subterraneus DSM 13965] Length = 73 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + +++++ L++ +RPA+ DGGDI +G+V + + GAC GCP + TLK G+ I Sbjct: 1 MREQVEQALES-IRPAIQMDGGDIELVDVDENGVVRVRLIGACVGCPMSIMTLKAGIERI 59 Query: 176 LNHFVPEVKDIRTV 189 L VP V D+ V Sbjct: 60 LRERVPGVTDVEAV 73 >gi|332798963|ref|YP_004460462.1| nitrogen-fixing NifU domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696698|gb|AEE91155.1| nitrogen-fixing NifU domain-containing protein [Tepidanaerobacter sp. Re1] Length = 74 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 2/69 (2%) Query: 123 EVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 EV+ N++RP++ DGGD+ + GIV + + GAC GCP A+ TLK G+ L + Sbjct: 6 EVVLNKIRPSLQADGGDVELVDVDEVAGIVKVRLTGACGGCPFATMTLKNGIEEALKEEI 65 Query: 181 PEVKDIRTV 189 PEVK+++ V Sbjct: 66 PEVKEVQQV 74 >gi|194319991|pdb|2Z51|A Chain A, Crystal Structure Of Arabidopsis Cnfu Involved In Iron- Sulfur Cluster Biosynthesis Length = 154 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ VLD +RP + DGG++ +V + ++GAC CPS++ T+K G+ L Sbjct: 5 TEENVESVLDE-IRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRL 63 Query: 177 NHFVPEVKDIRT 188 +PE+ + Sbjct: 64 MEKIPEIVAVEA 75 Score = 39.4 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 4/71 (5%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + I++VL+ + G + D IV + + G +G T++ V L Sbjct: 88 ENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAG----VMTVRVAVTQKLRE 143 Query: 179 FVPEVKDIRTV 189 +P + ++ + Sbjct: 144 KIPSIAAVQLI 154 >gi|254786162|ref|YP_003073591.1| gluconate transport associated thioredoxin-like protein YhgI [Teredinibacter turnerae T7901] gi|259511746|sp|C5BJC0|NFUA_TERTT RecName: Full=Fe/S biogenesis protein nfuA gi|237684627|gb|ACR11891.1| putative gluconate transport associated thioredoxin-like protein YhgI [Teredinibacter turnerae T7901] Length = 194 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 47/133 (35%), Gaps = 10/133 (7%) Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE---------SDSAV 117 + + + G P + + G DS + Sbjct: 51 EAEEADHVMELSGFNAYFEDRSVPFLDEAKVDYAPDKMGGQLTIRAPNSKMPKISDDSPI 110 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +I VL N V P +A GG++ + DG+ L G C GC + TLK GV L Sbjct: 111 EDKINYVLYNEVNPGLASHGGNVSLERLTDDGMAILRFGGGCQGCSAVDMTLKQGVEKTL 170 Query: 177 NHFVPEVKDIRTV 189 +PE+ +R V Sbjct: 171 MERIPELAGVRDV 183 >gi|71029204|ref|XP_764245.1| hypothetical protein [Theileria parva strain Muguga] gi|68351199|gb|EAN31962.1| hypothetical protein TP04_0610 [Theileria parva] Length = 180 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 2/90 (2%) Query: 102 LDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACS 159 + + + D V+ IK ++D R+RP + +DGGD+ F Y G V++ + GAC Sbjct: 76 TKAVIPESYSDEDIETVESIKILIDKRIRPVIQQDGGDVSFVSYDPSTGYVYVRLSGACV 135 Query: 160 GCPSASETLKYGVANILNHFVPEVKDIRTV 189 GC + TLK+ + +L H++ E+ + V Sbjct: 136 GCIQSDVTLKHMIQGMLCHYLEEITAVYNV 165 >gi|293375093|ref|ZP_06621383.1| NifU-like protein [Turicibacter sanguinis PC909] gi|325841245|ref|ZP_08167346.1| NifU-like protein [Turicibacter sp. HGF1] gi|292646287|gb|EFF64307.1| NifU-like protein [Turicibacter sanguinis PC909] gi|325489926|gb|EGC92273.1| NifU-like protein [Turicibacter sp. HGF1] Length = 78 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 ++I E+L+ ++RP + RDGGD+ + + DGIV++ M GAC GC S TLK G+ I Sbjct: 3 ETEKQIVEILE-KLRPYLQRDGGDVEYIKFEDGIVYVRMLGACVGCASMDSTLKDGIEQI 61 Query: 176 LNHFVPEVKDIRTV 189 L VP V + V Sbjct: 62 LLEEVPGVIGVENV 75 >gi|291279936|ref|YP_003496771.1| nitrogen-fixing NifU domain protein [Deferribacter desulfuricans SSM1] gi|290754638|dbj|BAI81015.1| nitrogen-fixing NifU domain protein [Deferribacter desulfuricans SSM1] Length = 75 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 2/73 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + +R++EVL N+VRP + DGGD+ DG+V + + GAC CP ++ TLK+G+ Sbjct: 3 LKERVQEVL-NQVRPGLQADGGDVELLDVTEDGVVKVQLTGACGSCPFSTMTLKHGIEMR 61 Query: 176 LNHFVPEVKDIRT 188 L +PEVK++ Sbjct: 62 LKEMIPEVKEVVA 74 >gi|225448154|ref|XP_002264418.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297739542|emb|CBI29724.3| unnamed protein product [Vitis vinifera] Length = 227 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ VLD +RP + DGG++ +V L ++GAC CPS+ T+K G+ L Sbjct: 78 TAENVESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRL 136 Query: 177 NHFVPEVKDIRTV 189 +PE+ + + Sbjct: 137 MEKIPEIVAVEPI 149 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + I++VL+ V GG + G + IV + + G +G T++ V L Sbjct: 161 ENIEKVLEEIRPYLVGAAGGSLELVGIDEPIVKVRITGPAAG----VMTVRVAVTQKLRE 216 Query: 179 FVPEVKDIR 187 +P + ++ Sbjct: 217 KIPAIAAVQ 225 >gi|289578725|ref|YP_003477352.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter italicus Ab9] gi|289528438|gb|ADD02790.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter italicus Ab9] Length = 73 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + +R++EVL+ +RP++ DGGD+ DGIV + + GAC GCP A+ TLK G+ Sbjct: 1 MRKRVEEVLE-LLRPSLQADGGDVELIDVTEDGIVKIRLTGACGGCPFATLTLKEGIERA 59 Query: 176 LNHFVPEVKDIRTV 189 + +PEVK++ V Sbjct: 60 IKEEIPEVKEVIAV 73 >gi|307266231|ref|ZP_07547773.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|326390563|ref|ZP_08212119.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter ethanolicus JW 200] gi|306918761|gb|EFN48993.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|325993388|gb|EGD51824.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 73 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + +R++EVL+ +RP++ DGG++ DGIV + + GAC GCP A+ TLK G+ Sbjct: 1 MRERVEEVLE-LLRPSLQADGGNVELIDVTEDGIVKVRLTGACGGCPFATLTLKEGIERA 59 Query: 176 LNHFVPEVKDIRTV 189 + +PEV+++ V Sbjct: 60 IKEEIPEVREVIAV 73 >gi|297544959|ref|YP_003677261.1| nitrogen-fixing NifU domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842734|gb|ADH61250.1| nitrogen-fixing NifU domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 73 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + +R++EVL+ +RP++ DGGD+ +DGIV + + GAC GCP A+ TLK G+ Sbjct: 1 MRERVEEVLE-LLRPSLQADGGDVELIDVTKDGIVKIRLTGACGGCPFATLTLKEGIERA 59 Query: 176 LNHFVPEVKDIRTV 189 + +PEVK++ V Sbjct: 60 IKEEIPEVKEVIAV 73 >gi|322420167|ref|YP_004199390.1| nitrogen-fixing NifU domain-containing protein [Geobacter sp. M18] gi|320126554|gb|ADW14114.1| nitrogen-fixing NifU domain protein [Geobacter sp. M18] Length = 73 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + + +K +L+N +RPA+ DGGD+ DG+V + + GAC CP ++ TLK G+ Sbjct: 1 MTEEVKAILEN-IRPALQADGGDVELVEVTDDGVVKVRLVGACGHCPMSTMTLKMGIERT 59 Query: 176 LNHFVPEVKDIRTV 189 + +P VK++ +V Sbjct: 60 IKEKIPGVKEVVSV 73 >gi|15642714|ref|NP_232347.1| putative DNA uptake protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586599|ref|ZP_01676384.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121726724|ref|ZP_01679949.1| conserved hypothetical protein [Vibrio cholerae V52] gi|153212573|ref|ZP_01948320.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|153802209|ref|ZP_01956795.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|153817452|ref|ZP_01970119.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153821287|ref|ZP_01973954.1| conserved hypothetical protein [Vibrio cholerae B33] gi|153825505|ref|ZP_01978172.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|153828374|ref|ZP_01981041.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|227082834|ref|YP_002811385.1| hypothetical protein VCM66_2640 [Vibrio cholerae M66-2] gi|229507232|ref|ZP_04396737.1| NfuA Fe-S protein maturation [Vibrio cholerae BX 330286] gi|229509847|ref|ZP_04399328.1| NfuA Fe-S protein maturation [Vibrio cholerae B33] gi|229513648|ref|ZP_04403112.1| NfuA Fe-S protein maturation [Vibrio cholerae TMA 21] gi|229516968|ref|ZP_04406414.1| NfuA Fe-S protein maturation [Vibrio cholerae RC9] gi|229521794|ref|ZP_04411212.1| NfuA Fe-S protein maturation [Vibrio cholerae TM 11079-80] gi|229527354|ref|ZP_04416746.1| NfuA Fe-S protein maturation [Vibrio cholerae 12129(1)] gi|229606738|ref|YP_002877386.1| DNA uptake protein [Vibrio cholerae MJ-1236] gi|254225442|ref|ZP_04919053.1| conserved hypothetical protein [Vibrio cholerae V51] gi|254285915|ref|ZP_04960877.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|254851257|ref|ZP_05240607.1| DNA uptake protein [Vibrio cholerae MO10] gi|255744321|ref|ZP_05418273.1| protein gntY [Vibrio cholera CIRS 101] gi|261211283|ref|ZP_05925572.1| protein gntY [Vibrio sp. RC341] gi|262158569|ref|ZP_06029684.1| protein gntY [Vibrio cholerae INDRE 91/1] gi|262190721|ref|ZP_06048951.1| protein gntY [Vibrio cholerae CT 5369-93] gi|297581560|ref|ZP_06943483.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|298500465|ref|ZP_07010269.1| IscR-regulated protein YhgI [Vibrio cholerae MAK 757] gi|51702195|sp|Q9KNL2|NFUA_VIBCH RecName: Full=Fe/S biogenesis protein nfuA gi|254767333|sp|C3LSE7|NFUA_VIBCM RecName: Full=Fe/S biogenesis protein nfuA gi|9657318|gb|AAF95860.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549158|gb|EAX59191.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121630885|gb|EAX63267.1| conserved hypothetical protein [Vibrio cholerae V52] gi|124116444|gb|EAY35264.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124122283|gb|EAY41026.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|125622076|gb|EAZ50399.1| conserved hypothetical protein [Vibrio cholerae V51] gi|126512038|gb|EAZ74632.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126521219|gb|EAZ78442.1| conserved hypothetical protein [Vibrio cholerae B33] gi|148876204|gb|EDL74339.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|149740790|gb|EDM54881.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|150424097|gb|EDN16036.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|227010722|gb|ACP06934.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|229334986|gb|EEO00471.1| NfuA Fe-S protein maturation [Vibrio cholerae 12129(1)] gi|229341388|gb|EEO06392.1| NfuA Fe-S protein maturation [Vibrio cholerae TM 11079-80] gi|229346031|gb|EEO11003.1| NfuA Fe-S protein maturation [Vibrio cholerae RC9] gi|229349525|gb|EEO14481.1| NfuA Fe-S protein maturation [Vibrio cholerae TMA 21] gi|229353321|gb|EEO18260.1| NfuA Fe-S protein maturation [Vibrio cholerae B33] gi|229354737|gb|EEO19658.1| NfuA Fe-S protein maturation [Vibrio cholerae BX 330286] gi|229369393|gb|ACQ59816.1| NfuA Fe-S protein maturation [Vibrio cholerae MJ-1236] gi|254846962|gb|EET25376.1| DNA uptake protein [Vibrio cholerae MO10] gi|255737846|gb|EET93239.1| protein gntY [Vibrio cholera CIRS 101] gi|260839784|gb|EEX66395.1| protein gntY [Vibrio sp. RC341] gi|262029730|gb|EEY48379.1| protein gntY [Vibrio cholerae INDRE 91/1] gi|262033398|gb|EEY51906.1| protein gntY [Vibrio cholerae CT 5369-93] gi|297534398|gb|EFH73236.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297540634|gb|EFH76691.1| IscR-regulated protein YhgI [Vibrio cholerae MAK 757] Length = 195 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 66/181 (36%), Gaps = 16/181 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F + PG + G + + + P G Sbjct: 6 TITESAQSHFAKLLAQQPEGTNIRVFVVNPGTQNAECGVSYCPP--EAVEATDTEYPFSG 63 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 P + + D D MGS + D+++++R++ L +V Sbjct: 64 FSAYVDELSLPFLEEAVI-DFVTDKMGSQLTLKAPNAKMRKVSDDASLMERVEYALQTQV 122 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIR 187 P +A GG + DG+ + G C+GC TLK G+ +L F E+ +R Sbjct: 123 NPQLAGHGGHVRLISISDDGVALVQFGGGCNGCSMVDVTLKEGIEKELLAQFAGELTAVR 182 Query: 188 T 188 Sbjct: 183 D 183 >gi|197119169|ref|YP_002139596.1| thioredoxin/NifU-like domain-containing protein [Geobacter bemidjiensis Bem] gi|197088529|gb|ACH39800.1| thioredoxin/NifU-like domain protein [Geobacter bemidjiensis Bem] Length = 73 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + + +K +L+ ++RPA+ DGGD+ DGIV + + GAC CP ++ TLK G+ Sbjct: 1 MTEEVKAILE-QIRPALQADGGDVELVEVTDDGIVKVRLVGACGHCPMSTMTLKMGIERT 59 Query: 176 LNHFVPEVKDIRTV 189 + VP +K++ V Sbjct: 60 IKEKVPGIKEVVAV 73 >gi|313220324|emb|CBY31180.1| unnamed protein product [Oikopleura dioica] Length = 95 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 2/72 (2%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANILN 177 IKE+LD R+RP V DGGDI F + G++ LS+ GAC+ CPS+ TLK+GV N++ Sbjct: 1 MIKELLDTRIRPTVMEDGGDIAFVSFDPDTGVLQLSLIGACATCPSSVVTLKHGVENMMK 60 Query: 178 HFVPEVKDIRTV 189 ++PE+ ++ + Sbjct: 61 FYIPEITEVEQI 72 >gi|149911004|ref|ZP_01899633.1| Thioredoxin-like protein [Moritella sp. PE36] gi|149805907|gb|EDM65893.1| Thioredoxin-like protein [Moritella sp. PE36] Length = 192 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 66/181 (36%), Gaps = 16/181 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F + PG A+ G + + + + P G Sbjct: 3 TITEAAQTHFVKLLSNQKDGTNIRVFVVNPGTANAECGVSYCPP--EAIESTDIVLPYSG 60 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 P + + + D D MGS + D+ + +R+ V+ V Sbjct: 61 FDALIDDMSKPFLTDAYI-DFVTDKMGSQLTLKAPNAKIRAVADDAPLTERVDYVIQTEV 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIR 187 P +A GG++V DGI L G C+GC TLK G+ L P E+ ++ Sbjct: 120 NPQLAGHGGNVVLTEITDDGIAILQFGGGCNGCSQVDFTLKEGIEKQLLELFPEELTAVK 179 Query: 188 T 188 Sbjct: 180 D 180 >gi|70940575|ref|XP_740685.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56518569|emb|CAH83895.1| hypothetical protein PC401665.00.0 [Plasmodium chabaudi chabaudi] Length = 191 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 5/119 (4%) Query: 76 PVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ---RIKEVLDNRVRPA 132 + I D I N G L + + + +++ IK +++ RVRP Sbjct: 66 EINNFIETFQNHSDNSISNEGNILPILQKIKNEPKYNENEEIMEIISSIKLLIEKRVRPI 125 Query: 133 VARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 V DGGDI F + GIV++ ++GAC GC + TL+Y + N+L +++ E+K+I+ + Sbjct: 126 VVNDGGDIKFVCFDMDSGIVYVQLQGACVGCSQSEVTLQYMIKNMLTYYISEIKEIKNI 184 >gi|147674569|ref|YP_001218208.1| putative DNA uptake protein [Vibrio cholerae O395] gi|262170037|ref|ZP_06037726.1| NfuA Fe-S protein maturation [Vibrio cholerae RC27] gi|172047529|sp|A5F4R9|NFUA_VIBC3 RecName: Full=Fe/S biogenesis protein nfuA gi|146316452|gb|ABQ20991.1| conserved hypothetical protein [Vibrio cholerae O395] gi|227014606|gb|ACP10816.1| conserved hypothetical protein [Vibrio cholerae O395] gi|262021445|gb|EEY40157.1| NfuA Fe-S protein maturation [Vibrio cholerae RC27] Length = 195 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 68/182 (37%), Gaps = 18/182 (9%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F + PG + G + + + P G Sbjct: 6 TITESAQSHFAKLLAQQPEGTNIRVFVVNPGTQNAECGVSYCPP--EAVEATDTEYPFSG 63 Query: 80 MIMEHFISGDPI-IHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNR 128 ++ G + + D D MGS + D+++++R++ L + Sbjct: 64 F--SAYVDGLSLPFLEEAVIDFVTDKMGSQLTLKAPNAKMRKVSDDASLMERVEYALQTQ 121 Query: 129 VRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDI 186 V P +A GG + DG+ + G C+GC TLK G+ +L F E+ + Sbjct: 122 VNPQLAGHGGHVRLISISDDGVALVQFGGGCNGCSMVDVTLKEGIEKELLAQFAGELTAV 181 Query: 187 RT 188 R Sbjct: 182 RD 183 >gi|49082646|gb|AAT50723.1| PA1847 [synthetic construct] Length = 195 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETL 168 + DS + +RI L + P +A GG + D I L G C GC TL Sbjct: 103 MVNEDSPITERINYYLQTEINPGLASHGGQVSLVDVVEDNIAVLRFGGGCQGCGMVDMTL 162 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K GV L +PE+K +R V Sbjct: 163 KDGVEKTLIERIPELKGVRDV 183 >gi|209696309|ref|YP_002264240.1| putative DNA uptake protein [Aliivibrio salmonicida LFI1238] gi|254767289|sp|B6ENV8|NFUA_ALISL RecName: Full=Fe/S biogenesis protein nfuA gi|208010263|emb|CAQ80595.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 194 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 67/180 (37%), Gaps = 16/180 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ + R+F + PG + G + + + L+ L Sbjct: 6 ITESAQEHFAKLLAQQPEGTNIRVFVVNPGTQNAECGVSYCPPEAIEANDTELKFENLSA 65 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 ++ P + + + D D MGS + D+ + +R++ + +V Sbjct: 66 YVDELS--LPFLEDADI-DYVTDKMGSQLTLKAPNAKMRKVNDDAPLFERVEYAIQTQVN 122 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIRT 188 P +A GG + GI + G C+GC TLK G+ +L F E+ ++ Sbjct: 123 PQLAGHGGHVSLMEITEAGIAIVQFGGGCNGCSMVDVTLKEGIEKELLAQFEGELTAVKD 182 >gi|195941174|ref|ZP_03086556.1| putative DNA uptake protein [Escherichia coli O157:H7 str. EC4024] Length = 152 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 14/143 (9%) Query: 57 GYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG-------- 108 G + + L+ L ++ + P + + + D D +GS Sbjct: 1 GVSYCPPDAVEATDTALKFEQLTAYVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNA 57 Query: 109 --DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSAS 165 + D+ +++R++ +L +++ P +A GG + DG+ L G C+GC Sbjct: 58 KMRKVSDDAPLMERVEYLLQSQINPQLAGHGGRVSLMEITEDGLAILQFGGGCNGCSMVD 117 Query: 166 ETLKYGVANILNHFVPEVKDIRT 188 TLK G+ + + PE+K +R Sbjct: 118 VTLKEGIEKQMLNEFPELKGVRD 140 >gi|15597044|ref|NP_250538.1| hypothetical protein PA1847 [Pseudomonas aeruginosa PAO1] gi|107101280|ref|ZP_01365198.1| hypothetical protein PaerPA_01002314 [Pseudomonas aeruginosa PACS2] gi|116049799|ref|YP_791394.1| hypothetical protein PA14_40630 [Pseudomonas aeruginosa UCBPP-PA14] gi|152984911|ref|YP_001348805.1| hypothetical protein PSPA7_3445 [Pseudomonas aeruginosa PA7] gi|218892197|ref|YP_002441064.1| hypothetical protein PLES_34781 [Pseudomonas aeruginosa LESB58] gi|254234942|ref|ZP_04928265.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254240240|ref|ZP_04933562.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296389760|ref|ZP_06879235.1| hypothetical protein PaerPAb_16491 [Pseudomonas aeruginosa PAb1] gi|313110548|ref|ZP_07796433.1| hypothetical protein PA39016_002410135 [Pseudomonas aeruginosa 39016] gi|51702153|sp|Q9I2P8|NFUA_PSEAE RecName: Full=Fe/S biogenesis protein nfuA gi|122258910|sp|Q02KZ2|NFUA_PSEAB RecName: Full=Fe/S biogenesis protein nfuA gi|254767309|sp|A6V6X0|NFUA_PSEA7 RecName: Full=Fe/S biogenesis protein nfuA gi|254767310|sp|B7VB28|NFUA_PSEA8 RecName: Full=Fe/S biogenesis protein nfuA gi|9947835|gb|AAG05236.1|AE004611_1 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115585020|gb|ABJ11035.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126166873|gb|EAZ52384.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126193618|gb|EAZ57681.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|150960069|gb|ABR82094.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] gi|218772423|emb|CAW28205.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58] gi|310882935|gb|EFQ41529.1| hypothetical protein PA39016_002410135 [Pseudomonas aeruginosa 39016] Length = 194 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETL 168 + DS + +RI L + P +A GG + D I L G C GC TL Sbjct: 103 MVNEDSPITERINYYLQTEINPGLASHGGQVSLVDVVEDNIAVLRFGGGCQGCGMVDMTL 162 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K GV L +PE+K +R V Sbjct: 163 KDGVEKTLIERIPELKGVRDV 183 >gi|229524698|ref|ZP_04414103.1| NfuA Fe-S protein maturation [Vibrio cholerae bv. albensis VL426] gi|229338279|gb|EEO03296.1| NfuA Fe-S protein maturation [Vibrio cholerae bv. albensis VL426] Length = 195 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 16/181 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F + PG + G + + + P G Sbjct: 6 TITESAQSHFAKLLAQQPEGTNIRVFVVNPGTQNAECGVSYCPP--EAVEATDTEYPFSG 63 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 + + D D MGS + D+++++R++ L +V Sbjct: 64 F-SAYVDELSLTFLEEAVIDFVTDKMGSQLTLKAPNAKMRKVSDDASLIERVEYALQTQV 122 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIR 187 P +A GG + DG+ + G C+GC TLK G+ +L F E+ +R Sbjct: 123 NPQLAGHGGHVRLISISDDGVALVQFGGGCNGCSMVDVTLKEGIEKELLAQFAGELTAVR 182 Query: 188 T 188 Sbjct: 183 D 183 >gi|255637868|gb|ACU19253.1| unknown [Glycine max] Length = 219 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ VLD +RP + DGG++ +V L ++GAC CPS+ T+K G+ L Sbjct: 70 TAENVESVLDE-IRPYLIADGGNVALHQIDGNVVRLKLQGACGSCPSSVTTMKMGIERRL 128 Query: 177 NHFVPEVKDIRTV 189 +PE+ + + Sbjct: 129 MEKIPEIVAVEPI 141 Score = 43.2 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 14/98 (14%) Query: 92 IHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAV--ARDGGDIVFKGYRDGI 149 I + D+ + E + I++VL+ +RP + A D G + + I Sbjct: 132 IPEIVAVEPIADEETGLELNEDN------IEKVLEE-MRPYLVGAAD-GTLELVAIDEPI 183 Query: 150 VFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 V + + G ++ T++ V L +P + ++ Sbjct: 184 VKVRITGP----AASVLTVRVAVTQKLREKIPAIAAVQ 217 >gi|220931159|ref|YP_002508067.1| nitrogen-fixing NifU domain protein [Halothermothrix orenii H 168] gi|219992469|gb|ACL69072.1| nitrogen-fixing NifU domain protein [Halothermothrix orenii H 168] Length = 74 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 3/75 (4%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVAN 174 + + + +++D ++RP++ DGGD+ D GIV + + GAC GCP ++ T+K G+ Sbjct: 1 MKEEVAKIID-KIRPSLQADGGDVKLVDVDDEKGIVKVKLLGACQGCPMSTMTIKNGIER 59 Query: 175 ILNHFVPEVKDIRTV 189 +L VP VK+++ V Sbjct: 60 VLKEKVPGVKEVKPV 74 >gi|219120702|ref|XP_002181084.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217407800|gb|EEC47736.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 225 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 4/112 (3%) Query: 77 VLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARD 136 + I+ F S + + G D + ++ VLD +RP + +D Sbjct: 35 LRDQIVSPFDSSE---RDEGSVATTELDAPPTKLVGPLDLTWDNVEAVLDE-MRPYLIQD 90 Query: 137 GGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 GG+++ +V L ++GAC CPS+++T+K G+ L +PE++++ Sbjct: 91 GGNVIISDIDGPVVKLELQGACGTCPSSTQTMKMGLERGLREKIPEIQEVIQ 142 >gi|253700042|ref|YP_003021231.1| nitrogen-fixing NifU domain protein [Geobacter sp. M21] gi|251774892|gb|ACT17473.1| nitrogen-fixing NifU domain protein [Geobacter sp. M21] Length = 73 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + + +K +L+ ++RPA+ DGGD+ DGIV + + GAC CP ++ TLK G+ Sbjct: 1 MTEEVKAILE-QIRPALQADGGDVELVEVTDDGIVKVRLVGACGHCPMSTMTLKMGIERT 59 Query: 176 LNHFVPEVKDIRTV 189 + +P +K++ V Sbjct: 60 IKDKIPGIKEVVAV 73 >gi|317121652|ref|YP_004101655.1| nitrogen-fixing NifU domain protein [Thermaerobacter marianensis DSM 12885] gi|315591632|gb|ADU50928.1| nitrogen-fixing NifU domain protein [Thermaerobacter marianensis DSM 12885] Length = 73 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + + +++ L++ +RPA+ DGGDI +G+V + + GAC GCP + TLK G+ I Sbjct: 1 MRELVEQALES-IRPAIQMDGGDIELVDVDENGVVRVRLIGACVGCPMSIMTLKAGIERI 59 Query: 176 LNHFVPEVKDIRTV 189 L VP V D+ V Sbjct: 60 LRERVPGVTDVEAV 73 >gi|313673639|ref|YP_004051750.1| nitrogen-fixing nifu domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940395|gb|ADR19587.1| nitrogen-fixing NifU domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 75 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 48/73 (65%), Gaps = 2/73 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + +R++EVL +VRPA+ DGGD+ G DG+V + + GAC CP ++ TLK+G+ Sbjct: 3 LKERVEEVL-KKVRPALQADGGDVELLGVTDDGVVKVQLTGACGSCPFSTMTLKHGIEMR 61 Query: 176 LNHFVPEVKDIRT 188 L +PE+K++ + Sbjct: 62 LKDEIPEIKEVVS 74 >gi|90416073|ref|ZP_01224006.1| yhgI protein [marine gamma proteobacterium HTCC2207] gi|90332447|gb|EAS47644.1| yhgI protein [marine gamma proteobacterium HTCC2207] Length = 193 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 38/77 (49%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 DS + RI +L N + P +A GG + +G L G C GC + S TLK GV Sbjct: 106 DDSPIEDRINYLLYNEINPGLASHGGVVSLSEMDEGFAVLEFGGGCQGCSAVSMTLKEGV 165 Query: 173 ANILNHFVPEVKDIRTV 189 L +PE+K +R V Sbjct: 166 EKTLMEKIPELKGVRDV 182 >gi|84997065|ref|XP_953254.1| hypothetical protein [Theileria annulata strain Ankara] gi|65304250|emb|CAI76629.1| hypothetical protein, conserved [Theileria annulata] Length = 179 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 2/111 (1%) Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI 140 I ++++ + + + + + + V+ IK ++D R+RP + +DGGD+ Sbjct: 55 INRNYLTASSLNYPNRSFSTVTKAVVPETYSDEEIETVESIKLLIDKRIRPVIQQDGGDV 114 Query: 141 VFKGYR--DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 F Y G V++ + GAC GC + TLK+ + +L H++ E+ + V Sbjct: 115 FFVSYDPSTGYVYVRLSGACVGCIQSDITLKHMIQGMLCHYLEEITAVYNV 165 >gi|225848086|ref|YP_002728249.1| hypothetical protein SULAZ_0254 [Sulfurihydrogenibium azorense Az-Fu1] gi|225643275|gb|ACN98325.1| conserved domain protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 79 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 Q+++EVL+ +VRP + DGGD+ DG V++ + G+CSGC + TLK GV L Sbjct: 6 QKVEEVLE-QVRPYLRFDGGDVELVDVSEDGTVYVRLMGSCSGCAMSLWTLKGGVEARLK 64 Query: 178 HFVPEVKDIRTV 189 +PEVK++ V Sbjct: 65 QAIPEVKEVVAV 76 >gi|226944949|ref|YP_002800022.1| NfuA protein [Azotobacter vinelandii DJ] gi|259511740|sp|C1DLW0|NFUA_AZOVD RecName: Full=Fe/S biogenesis protein nfuA gi|226719876|gb|ACO79047.1| NfuA protein [Azotobacter vinelandii DJ] Length = 194 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETL 168 I+ DS + +RI L + P +A GG + +GI L G C GC TL Sbjct: 103 MIDEDSPLGERINYYLQTEINPGLASHGGQVSLVDIVEEGIAVLRFGGGCQGCGMVDMTL 162 Query: 169 KYGVANILNHFVPEVKDIRT 188 K GV L +P++K +R Sbjct: 163 KDGVEKTLLERIPDLKGVRD 182 >gi|20808161|ref|NP_623332.1| thioredoxin domain-containing protein [Thermoanaerobacter tengcongensis MB4] gi|20516751|gb|AAM24936.1| Thioredoxin-like proteins and domains [Thermoanaerobacter tengcongensis MB4] Length = 73 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + +R++E+L N ++P++ DGGD+ DG+V + + GAC GCP A+ TLK G+ Sbjct: 1 MRERVEEIL-NLIKPSLQADGGDVELVDVTEDGVVKVKLTGACGGCPFATLTLKEGIERA 59 Query: 176 LNHFVPEVKDIRTV 189 + +PEVK++ V Sbjct: 60 IKEEIPEVKEVIAV 73 >gi|237756555|ref|ZP_04585079.1| putative conserved hypothetical protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237691283|gb|EEP60367.1| putative conserved hypothetical protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 78 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 Q+++EVL+ +VRP + DGGD+ DG V++ + GACSGC + TLK GV L Sbjct: 6 QKVEEVLE-QVRPYLRFDGGDVELVDVGEDGTVYVRLMGACSGCHMSLWTLKGGVEARLK 64 Query: 178 HFVPEVKDIRTV 189 +PEVK++ V Sbjct: 65 QAIPEVKEVVAV 76 >gi|298708751|emb|CBJ30713.1| NifU-like protein 2, chloroplast precursor (AtCNfu2) (AtCnfU-V) [Ectocarpus siliculosus] Length = 276 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 1/103 (0%) Query: 86 ISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY 145 +S I M D + ++ ++ VLD +RP + DGG++ Sbjct: 92 MSSTDIESPFATPGMADMGDEEEDPEALLTLTLENVETVLDE-MRPYLMSDGGNVRVVEI 150 Query: 146 RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 +V L + GAC CPS++ T+K G+ L +PE+ ++ Sbjct: 151 DGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQ 193 >gi|169350337|ref|ZP_02867275.1| hypothetical protein CLOSPI_01098 [Clostridium spiroforme DSM 1552] gi|169293120|gb|EDS75253.1| hypothetical protein CLOSPI_01098 [Clostridium spiroforme DSM 1552] Length = 83 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 33/77 (42%), Positives = 51/77 (66%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + + ++ I++V+ N++RP + RDGGDI ++DGIV++ M GAC+GC ETLK GV Sbjct: 2 ENMSTIEEIEKVI-NKLRPYLNRDGGDIELVDFKDGIVYVKMLGACAGCAMLDETLKDGV 60 Query: 173 ANILNHFVPEVKDIRTV 189 IL VP V +++ V Sbjct: 61 EQILMEEVPGVLEVKNV 77 >gi|195952454|ref|YP_002120744.1| nitrogen-fixing NifU domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932066|gb|ACG56766.1| nitrogen-fixing NifU domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 87 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 2/75 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVAN 174 V+ ++E LD +RPA+ DGGDI DG V + + GACSGC ++ TLK GV Sbjct: 4 PTVEEVEEALDE-IRPALRFDGGDIELVSIEEDGTVLVRLMGACSGCGMSTLTLKAGVER 62 Query: 175 ILNHFVPEVKDIRTV 189 L P++K+++ V Sbjct: 63 ALKQKFPDIKEVKDV 77 >gi|210630137|ref|ZP_03296252.1| hypothetical protein COLSTE_00136 [Collinsella stercoris DSM 13279] gi|210160610|gb|EEA91581.1| hypothetical protein COLSTE_00136 [Collinsella stercoris DSM 13279] Length = 93 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 2/68 (2%) Query: 123 EVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP 181 EVL+ ++RP + DGGD+ + G +G+V L ++GAC+GCP +S TL G+ IL VP Sbjct: 10 EVLE-QIRPNLQADGGDMAYVGVTDEGVVQLELQGACAGCPMSSLTLSMGIERILKEHVP 68 Query: 182 EVKDIRTV 189 V + V Sbjct: 69 GVTRVEQV 76 >gi|301168132|emb|CBW27720.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 85 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 45/72 (62%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++++I+ + D +VRPA+A GG++ +G +F+ + G C GC S+S TLK G+ ++ Sbjct: 1 MIRKIENLFDEQVRPALAAHGGNVEVIDIDNGKLFVKLSGGCQGCSSSSATLKDGIERMV 60 Query: 177 NHFVPEVKDIRT 188 PE++++ Sbjct: 61 KQNFPEIEEVVD 72 >gi|159474062|ref|XP_001695148.1| iron-sulfur cluster assembly protein [Chlamydomonas reinhardtii] gi|158276082|gb|EDP01856.1| iron-sulfur cluster assembly protein [Chlamydomonas reinhardtii] Length = 154 Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + +++VLD VRP + DGG++ F +V L ++GAC CPS++ T+ G+ L Sbjct: 7 ENVEKVLDE-VRPYLMADGGNVEFMEIDGLVVKLKLQGACGSCPSSTTTMTMGIKRRLME 65 Query: 179 FVPEVKDIRTV 189 +PE+ D+ V Sbjct: 66 RIPEILDVEQV 76 Score = 39.4 bits (91), Expect = 0.25, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 6/72 (8%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSAS-ETLKYGVANILN 177 ++ VL+ V GG + IV + + G P+A+ T++ V L Sbjct: 88 DNVETVLNEIRPYLVGTGGGGLELVAIDGVIVKVKISG-----PAANVMTVRVAVTQKLR 142 Query: 178 HFVPEVKDIRTV 189 +P + ++ V Sbjct: 143 EKIPGIAAVQLV 154 >gi|238014236|gb|ACR38153.1| unknown [Zea mays] Length = 226 Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ VLD VRP + DGG++ +V L ++GAC CP++ T+K G+ L Sbjct: 76 TAENVEMVLDE-VRPYLMADGGNVALHEIDGNVVRLKLQGACGSCPASVTTMKMGIERRL 134 Query: 177 NHFVPEVKDIRTV 189 +PE+ + + Sbjct: 135 MEKIPEIVAVEPI 147 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Query: 119 QRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + I++VLD +RP +A GG + F + IV + + G +G T++ + L Sbjct: 159 ENIEKVLDE-IRPYLAGTGGGELEFVTIEEPIVKVRLTGPAAG----VMTVRVALTQKLR 213 Query: 178 HFVPEVKDIR 187 +P++ ++ Sbjct: 214 EKIPKIAAVQ 223 >gi|226495405|ref|NP_001148901.1| NFU3 [Zea mays] gi|195623070|gb|ACG33365.1| NFU3 [Zea mays] Length = 226 Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ VLD VRP + DGG++ +V L ++GAC CP++ T+K G+ L Sbjct: 76 TAENVEMVLDE-VRPYLMADGGNVALHEIDGNVVRLKLQGACGSCPASVTTMKMGIERRL 134 Query: 177 NHFVPEVKDIRTV 189 +PE+ + + Sbjct: 135 MEKIPEIVAVEPI 147 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Query: 119 QRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + I++VLD +RP +A GG + F + IV + + G +G T++ + L Sbjct: 159 ENIEKVLDE-IRPYLAGTGGGELEFVTIEEPIVKVRLTGPAAG----VMTVRVALTQKLR 213 Query: 178 HFVPEVKDIR 187 +P++ ++ Sbjct: 214 EKIPKIAAVQ 223 >gi|218185367|gb|EEC67794.1| hypothetical protein OsI_35353 [Oryza sativa Indica Group] Length = 228 Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 1/92 (1%) Query: 98 GDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGA 157 + + + D + ++ VLD VRP + DGG++ +V L ++GA Sbjct: 59 QQQVVKAIANPDPAVELPLTAENVEIVLDE-VRPYLMADGGNVALHEIDGNVVRLKLQGA 117 Query: 158 CSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 C CP++ T+K G+ L +PE+ + + Sbjct: 118 CGSCPASVTTMKMGIERRLMEKIPEIVAVEPI 149 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Query: 119 QRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + I++VLD +RP ++ GG + F + IV + + G +G T++ + L Sbjct: 161 ENIEKVLDE-IRPYLSGTGGGELEFVAIEEPIVKVRLTGPAAG----VMTVRVALTQKLR 215 Query: 178 HFVPEVKDIR 187 +P++ ++ Sbjct: 216 EKIPKIAAVQ 225 >gi|115484477|ref|NP_001065900.1| Os11g0181500 [Oryza sativa Japonica Group] gi|108864066|gb|ABG22389.1| nitrogen fixation protein, putative, expressed [Oryza sativa Japonica Group] gi|113644604|dbj|BAF27745.1| Os11g0181500 [Oryza sativa Japonica Group] gi|215695304|dbj|BAG90495.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765607|dbj|BAG87304.1| unnamed protein product [Oryza sativa Japonica Group] gi|222615626|gb|EEE51758.1| hypothetical protein OsJ_33192 [Oryza sativa Japonica Group] Length = 228 Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 1/92 (1%) Query: 98 GDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGA 157 + + + D + ++ VLD VRP + DGG++ +V L ++GA Sbjct: 59 QQQVVKAIANPDPAVELPLTAENVEIVLDE-VRPYLMADGGNVALHEIDGNVVRLKLQGA 117 Query: 158 CSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 C CP++ T+K G+ L +PE+ + + Sbjct: 118 CGSCPASVTTMKMGIERRLMEKIPEIVAVEPI 149 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Query: 119 QRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + I++VLD +RP ++ GG + F + IV + + G +G T++ + L Sbjct: 161 ENIEKVLDE-IRPYLSGTGGGELEFVAIEEPIVKVRLTGPAAG----VMTVRVALTQKLR 215 Query: 178 HFVPEVKDIR 187 +P++ ++ Sbjct: 216 EKIPKIAAVQ 225 >gi|156081764|ref|XP_001608375.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148800946|gb|EDL42351.1| hypothetical protein, conserved [Plasmodium vivax] Length = 191 Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 5/119 (4%) Query: 76 PVLGMIMEHFISGDPIIHNGG---LGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPA 132 + I + D +G K+ + + E ++ IK +++ RVRP Sbjct: 66 EINNFIDAFQKNSDDSSSSGENILSILQKIKNEKKYEQNEDLMEIISSIKLLIEKRVRPV 125 Query: 133 VARDGGDIVFK--GYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 + DGGDI F DGIV++ + GAC C + TL+Y + N+L +++ E+K+I+ V Sbjct: 126 IVNDGGDIKFICFDIDDGIVYVQLEGACVTCSQSEITLQYMIKNMLTYYISEIKEIKNV 184 >gi|224126131|ref|XP_002329668.1| predicted protein [Populus trichocarpa] gi|222870549|gb|EEF07680.1| predicted protein [Populus trichocarpa] Length = 149 Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + +++VLD VRP + RDGG++ +V L ++GAC CPS+S TLK G+ L Sbjct: 8 TEENVEKVLDE-VRPGLMRDGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIETKL 66 Query: 177 NHFVPEVKDIRTV 189 +PE+ D+ + Sbjct: 67 RDKIPEIMDVEQI 79 Score = 39.0 bits (90), Expect = 0.28, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 5/83 (6%) Query: 100 MKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGAC 158 ++ D+ E+ + + E +RP +A GG + D +V + + G Sbjct: 71 PEIMDVEQIMDTETGLELNEENVEKALAEIRPYLAGTGGGVLELVQINDYVVKVRLSGPA 130 Query: 159 SGCPSASETLKYGVANILNHFVP 181 +G T++ + L +P Sbjct: 131 AG----VMTVRVALTQKLRETIP 149 >gi|168012112|ref|XP_001758746.1| predicted protein [Physcomitrella patens subsp. patens] gi|162689883|gb|EDQ76252.1| predicted protein [Physcomitrella patens subsp. patens] Length = 153 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 40/74 (54%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 + + E++ + VRP + DGG++ +V L ++GAC CPS++ T++ G+ Sbjct: 2 ELTEENVELVLDEVRPYLISDGGNVALHEIDGLVVKLKLQGACGSCPSSTMTMRMGIERR 61 Query: 176 LNHFVPEVKDIRTV 189 L +PE+ + + Sbjct: 62 LIERIPEIVAVEQI 75 Score = 45.6 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 34/89 (38%), Gaps = 5/89 (5%) Query: 100 MKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGAC 158 ++ + E+ A+ + E + +RP + GG + +V + + G Sbjct: 67 PEIVAVEQIMDEETGLALTEENVEAVLGEIRPYLVGTGGGELELVKIDGPVVKVRLGGP- 125 Query: 159 SGCPSASETLKYGVANILNHFVPEVKDIR 187 ++ T++ V L +P + ++ Sbjct: 126 ---AASVMTVRVAVTQKLREKIPMIAAVQ 151 >gi|110738975|dbj|BAF01408.1| nitrogen fixation like protein [Arabidopsis thaliana] gi|227206276|dbj|BAH57193.1| AT4G25910 [Arabidopsis thaliana] Length = 155 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ VLD VRP++ DGG++ +V L ++GAC CPS+S TLK G+ + L Sbjct: 4 TEENVERVLDE-VRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRL 62 Query: 177 NHFVPEVKDIRT 188 +PE+ + Sbjct: 63 RDKIPEIMSVEQ 74 Score = 40.9 bits (95), Expect = 0.083, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 6/70 (8%) Query: 119 QRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + I++VL + +RP ++ GG + +V + + G +G T++ + L Sbjct: 88 ENIEKVL-SELRPYLSGTGGGGLELVEIDGYVVKVRLTGPAAG----VMTVRVALTQKLR 142 Query: 178 HFVPEVKDIR 187 +P + ++ Sbjct: 143 ETIPSIGAVQ 152 >gi|218886099|ref|YP_002435420.1| nitrogen-fixing NifU domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757053|gb|ACL07952.1| nitrogen-fixing NifU domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 77 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 2/76 (2%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVA 173 A+ +R++ LD +VRP + DGGD+ DG+V + + GAC GCP + +TLK GV Sbjct: 3 DAIHERVQAALD-KVRPYLQGDGGDVELVEITADGVVRVRLTGACKGCPMSQQTLKGGVE 61 Query: 174 NILNHFVPEVKDIRTV 189 ++ V EVK + V Sbjct: 62 RMVLKEVAEVKRVEAV 77 >gi|312144147|ref|YP_003995593.1| nitrogen-fixing NifU domain protein [Halanaerobium sp. 'sapolanicus'] gi|311904798|gb|ADQ15239.1| nitrogen-fixing NifU domain protein [Halanaerobium sp. 'sapolanicus'] Length = 73 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + + +++ LD ++RP++ DGGD+ +GIV + + GACSGCP ++ T+K G+ Sbjct: 1 MKEEVQKYLD-KIRPSLQADGGDVELVEVTEEGIVKVKLLGACSGCPMSTLTIKNGIERT 59 Query: 176 LNHFVPEVKDIRTV 189 L V VK+++ V Sbjct: 60 LKQNVDGVKEVQPV 73 >gi|302389972|ref|YP_003825793.1| nitrogen-fixing NifU domain protein [Thermosediminibacter oceani DSM 16646] gi|302200600|gb|ADL08170.1| nitrogen-fixing NifU domain protein [Thermosediminibacter oceani DSM 16646] Length = 74 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 50/75 (66%), Gaps = 3/75 (4%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVAN 174 + ++++EVL N++RP++ DGGD+ + GIV + + G+C GCP ++ TLK G+ Sbjct: 1 MKEKVQEVL-NKIRPSLQADGGDVELVDVDEEKGIVKVRLTGSCFGCPFSTLTLKNGIEQ 59 Query: 175 ILNHFVPEVKDIRTV 189 +L VP VK++++V Sbjct: 60 VLKEEVPGVKEVQSV 74 >gi|167756739|ref|ZP_02428866.1| hypothetical protein CLORAM_02286 [Clostridium ramosum DSM 1402] gi|167702914|gb|EDS17493.1| hypothetical protein CLORAM_02286 [Clostridium ramosum DSM 1402] Length = 83 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 31/77 (40%), Positives = 51/77 (66%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +++ ++ +++V+ N++RP + RDGGDI ++DGIV++ M GAC+GC ETLK GV Sbjct: 2 ENTSTIEEVEKVI-NKLRPYLNRDGGDIELIDFKDGIVYVKMLGACAGCSMLDETLKDGV 60 Query: 173 ANILNHFVPEVKDIRTV 189 IL VP V ++ + Sbjct: 61 EQILMEEVPGVLGVQNI 77 >gi|118578775|ref|YP_900025.1| NifU domain-containing protein [Pelobacter propionicus DSM 2379] gi|118501485|gb|ABK97967.1| nitrogen-fixing NifU domain protein [Pelobacter propionicus DSM 2379] Length = 74 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANI 175 + + + VL +VRPA+ DGGD+ DGIV + ++GAC CP ++ TLK G+ Sbjct: 1 MKEDVLRVL-GQVRPALQADGGDVELVEVTADGIVKVRLKGACGSCPMSTMTLKMGIERA 59 Query: 176 LNHFVPEVKDIRTV 189 + +P VK++ V Sbjct: 60 MKEQIPAVKEVVQV 73 >gi|224129660|ref|XP_002328771.1| predicted protein [Populus trichocarpa] gi|222839069|gb|EEE77420.1| predicted protein [Populus trichocarpa] Length = 234 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++ VLD VRP + DGG++ +V L ++GACS C ++ T+K G+ L Sbjct: 85 TADNVESVLDE-VRPYLISDGGNVALHEIDGNVVRLKLQGACSSCSASVTTMKMGIERRL 143 Query: 177 NHFVPEVKDIRTV 189 +PE+ + + Sbjct: 144 MEKIPEIVAVEAI 156 Score = 44.8 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 4/69 (5%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + I++VL+ V GG + + IV + + G +G T++ V L Sbjct: 168 ENIEKVLEEIRPYLVGAAGGSLELVAIEEPIVKIRITGPAAG----VMTVRVAVTQKLRE 223 Query: 179 FVPEVKDIR 187 +P + ++ Sbjct: 224 KIPAIAAVQ 232 >gi|224126127|ref|XP_002329667.1| predicted protein [Populus trichocarpa] gi|222870548|gb|EEF07679.1| predicted protein [Populus trichocarpa] Length = 167 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + +++VLD VRP + RDGG++ +V L ++GAC CPS+S TLK G+ L Sbjct: 17 TEENVEKVLDE-VRPGLMRDGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIETKL 75 Query: 177 NHFVPEVKDIRTV 189 +PE+ D+ + Sbjct: 76 RDKIPEIMDVEQI 88 Score = 43.2 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 5/91 (5%) Query: 100 MKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGAC 158 ++ D+ E+ + + E +RP +A GG + D +V + + G Sbjct: 80 PEIMDVEQIMDTETGLELNEENVEKALAEIRPYLAGTGGGVLELVQINDYVVKVRLSGPA 139 Query: 159 SGCPSASETLKYGVANILNHFVPEVKDIRTV 189 +G T++ + L +P + ++ + Sbjct: 140 AG----VMTVRVALTQKLRETIPAIAAVQLI 166 >gi|221054900|ref|XP_002258589.1| NifU-like protein [Plasmodium knowlesi strain H] gi|193808658|emb|CAQ39361.1| NifU-like protein, putative [Plasmodium knowlesi strain H] Length = 191 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 5/119 (4%) Query: 76 PVLGMIMEHFISGDPIIHNGG---LGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPA 132 + I + D +G K+ + + E ++ IK +++ RVRP Sbjct: 66 EINNFIDTFEKNSDDSSSSGENILSILQKIKNEKKYEQNEDLMEIISSIKLLIEKRVRPV 125 Query: 133 VARDGGDIVFK--GYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 + DGGDI F DGIV++ + GAC C + TL+Y + N+L +++ E+K+I+ V Sbjct: 126 IVNDGGDIKFICFDVDDGIVYVQLEGACVTCSQSEITLQYMIKNMLTYYISEIKEIKNV 184 >gi|188996345|ref|YP_001930596.1| nitrogen-fixing NifU domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931412|gb|ACD66042.1| nitrogen-fixing NifU domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 79 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 Q+++EVL+ +VRP + DGGD+ DG V++ + GACSGC + TLK GV L Sbjct: 6 QKVEEVLE-QVRPYLRFDGGDVELVDVGEDGTVYVRLMGACSGCHMSLWTLKGGVETRLK 64 Query: 178 HFVPEVKDIRTV 189 +PEVK++ + Sbjct: 65 QAIPEVKEVVAI 76 >gi|23099811|ref|NP_693277.1| nitrogen fixation protein [Oceanobacillus iheyensis HTE831] gi|22778042|dbj|BAC14312.1| nitrogen fixation protein (NifU protein) [Oceanobacillus iheyensis HTE831] Length = 74 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + ++++EVL N++RP + RDGGD+ +G+V L + GAC CPS++ TLK G+ Sbjct: 1 MQEQVQEVL-NKLRPFLLRDGGDVELIDVDEEGVVLLRLMGACGNCPSSTITLKAGIERA 59 Query: 176 LNHFVPEVKDIRTV 189 L VP V++I V Sbjct: 60 LMAEVPGVREIEQV 73 >gi|116748860|ref|YP_845547.1| NifU domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116697924|gb|ABK17112.1| nitrogen-fixing NifU domain protein [Syntrophobacter fumaroxidans MPOB] Length = 72 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++++E L ++RP + RDGG + + +V + + GAC GCP + TLK G+ ++ Sbjct: 1 MRKKVEEAL-AKIRPMLERDGGSVELVDVQGTVVKVRLTGACHGCPMSQMTLKAGIERVV 59 Query: 177 NHFVPEVKDIRTV 189 VPEV ++++V Sbjct: 60 KENVPEVTEVQSV 72 >gi|326487760|dbj|BAK05552.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 219 Score = 99.9 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 DS++ E++ ++VRP + DGG++ +V L ++GAC CP + T++ G+ Sbjct: 65 DSSLTAENVELVLDQVRPYLMADGGNVALHEIDGNVVRLKLQGACGACPGSVMTMRMGIQ 124 Query: 174 NILNHFVPEVKDIRTV 189 L +PE+ + + Sbjct: 125 RRLMDEIPEIAAVEAI 140 Score = 41.3 bits (96), Expect = 0.061, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE-TLKYGVANILN 177 + +++VLD GG++ F V + +RG P+A ++ VA L Sbjct: 152 ENVEKVLDEIRPYLTGAGGGNLRFVAINRFFVKVQLRG-----PAAGVAAIRVAVAQKLR 206 Query: 178 HFVPEVKDIR 187 +P + ++ Sbjct: 207 EKIPSISAVQ 216 >gi|158520102|ref|YP_001527972.1| NifU domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158508928|gb|ABW65895.1| nitrogen-fixing NifU domain protein [Desulfococcus oleovorans Hxd3] Length = 72 Score = 99.9 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + +++K LD ++RP + DGGD+ +G V + ++GAC+GCP + TLK + L Sbjct: 1 MKEQVKAALD-KIRPQLQADGGDVELVDVENGNVSVRLKGACAGCPMSQITLKQRIEAYL 59 Query: 177 NHFVPEVKDIRTV 189 VP V ++ V Sbjct: 60 KKTVPGVINVEKV 72 >gi|168037489|ref|XP_001771236.1| predicted protein [Physcomitrella patens subsp. patens] gi|162677477|gb|EDQ63947.1| predicted protein [Physcomitrella patens subsp. patens] Length = 165 Score = 99.9 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 2/79 (2%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ V+ + +VLD VRP + DGG++ +DG+V L ++GAC CPS++ T+K G Sbjct: 18 ETYEFTVENVDKVLDE-VRPYLIADGGNVEVVAVKDGVVSLRLQGACGTCPSSTSTMKMG 76 Query: 172 VANILNHFVPEV-KDIRTV 189 + +L +V K++ V Sbjct: 77 IERVLMEKFGDVLKEVVQV 95 >gi|242082972|ref|XP_002441911.1| hypothetical protein SORBIDRAFT_08g004740 [Sorghum bicolor] gi|241942604|gb|EES15749.1| hypothetical protein SORBIDRAFT_08g004740 [Sorghum bicolor] Length = 227 Score = 99.9 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++ VLD VRP + DGGD+ +V L ++GAC CPS+ T+K + L Sbjct: 77 TTGNVESVLDE-VRPYLIADGGDVALHEINGNVVRLKLQGACGSCPSSVTTMKMRIQRRL 135 Query: 177 NHFVPEVKDIRTV 189 +PE+ + V Sbjct: 136 MENIPEISAVERV 148 Score = 37.9 bits (87), Expect = 0.73, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 6/70 (8%) Query: 119 QRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +++VL +RP +A GG + +V + + G +G +T++ + L Sbjct: 160 ANVQKVLAE-IRPYLAGKGGGELELIKIVGHVVKVRLTGRAAG----VKTVRVALTQKLR 214 Query: 178 HFVPEVKDIR 187 +P + IR Sbjct: 215 EKIPSIAAIR 224 >gi|78189610|ref|YP_379948.1| NifU protein, putative [Chlorobium chlorochromatii CaD3] gi|78171809|gb|ABB28905.1| NifU protein, putative [Chlorobium chlorochromatii CaD3] Length = 84 Score = 99.9 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 2/84 (2%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSAS 165 S D++ S ++ R+ L+ VRP + DGGD G +D +V + + GAC CP ++ Sbjct: 2 SKDYLPSSDSLYDRVIAALET-VRPYLQADGGDCQLVGISKDMVVDVKLLGACGSCPMST 60 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TL+ GV + +PE+ + +V Sbjct: 61 LTLRAGVEQAIKKAIPEIVRVESV 84 >gi|311694682|gb|ADP97555.1| yhgI protein [marine bacterium HP15] Length = 195 Score = 99.9 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 13/161 (8%) Query: 40 PLASRIFS-IPGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLG 98 + RIF PG + + + E + + ++H + P + + Sbjct: 25 GMGVRIFVTQPGTKNAETCLAYCPPNEVVPTDEQVDLDKFVLYLDH--NSVPFLEEAYVD 82 Query: 99 DMKLDDMGSGDFI---------ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDG 148 K G + D+ + R+ +L + + P +A GG++ + Sbjct: 83 YSKDQMGGQLTIKAPNAKVPKIDDDAPLPDRVNYILASEINPNLAAHGGEVSLVEIVDES 142 Query: 149 IVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 + L G C GC + S TLK GV + L VPE+ +R V Sbjct: 143 VAVLRFGGGCQGCSAVSLTLKQGVESTLKERVPEITAVRDV 183 >gi|268317872|ref|YP_003291591.1| nitrogen-fixing NifU domain-containing protein [Rhodothermus marinus DSM 4252] gi|262335406|gb|ACY49203.1| nitrogen-fixing NifU domain protein [Rhodothermus marinus DSM 4252] Length = 96 Score = 99.9 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 103 DDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGC 161 +G D + +RI+E LD +RP + DGG + D +V L + GAC C Sbjct: 6 TTHTTGPLAPDDPELHRRIEEALD-MIRPYLMTDGGSVRLLNVTEDYVVELELLGACGTC 64 Query: 162 PSASETLKYGVANILNHFVPEVKDIRTV 189 P + TL+ G+ +L VPE+ + V Sbjct: 65 PMSLMTLRAGIEQVLKRAVPEITRVEAV 92 >gi|145351003|ref|XP_001419878.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580111|gb|ABO98171.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 213 Score = 99.9 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 101 KLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSG 160 + G ++ I+ VLD VRP + DGGD+ V L ++GAC Sbjct: 47 EARAASEGSLTDTLELTADNIESVLDE-VRPYLIADGGDVELVEIDGLSVKLKLKGACGS 105 Query: 161 CPSASETLKYGVANILNHFVPEVKDIRTV 189 CPS++ T++ G+ L +P++ ++ V Sbjct: 106 CPSSTVTMRMGIEKRLLEKIPDIMEVIQV 134 Score = 48.3 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 8/87 (9%) Query: 103 DDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGACSGC 161 + + + +E + ++ LD +RP +A GG + + IV + + G Sbjct: 130 EVIQVEEKLEGLDLNEENVEATLDE-IRPYLAGTGGGELELIDIEEPIVKVRLTG----- 183 Query: 162 PSAS-ETLKYGVANILNHFVPEVKDIR 187 P+A T++ V L +P + ++ Sbjct: 184 PAAKVMTVRVAVTQKLREKIPSIAAVQ 210 >gi|326530153|dbj|BAK08356.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 227 Score = 99.9 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ VLD VRP + DGG++V +V L ++GAC CP++ T+K G+ L Sbjct: 77 TAENVELVLDE-VRPYLMADGGNVVLHEIDGNVVRLKLQGACGSCPASVTTMKMGIERRL 135 Query: 177 NHFVPEVKDIRTV 189 +PE+ + + Sbjct: 136 MEKIPEIVAVEPI 148 Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Query: 119 QRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + I++VLD +RP ++ GG + F + IV + + G +G T++ + L Sbjct: 160 ENIEKVLDE-IRPYLSGTGGGELEFVSIEEPIVKVRLTGPAAG----VMTVRVALTQKLR 214 Query: 178 HFVPEVKDIR 187 +P++ ++ Sbjct: 215 EKIPKIAAVQ 224 >gi|218192692|gb|EEC75119.1| hypothetical protein OsI_11301 [Oryza sativa Indica Group] Length = 288 Score = 99.9 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 18/134 (13%) Query: 73 LRPPVLGMIMEH--------FISGDPIIHNGGLGDMKLDDMGSGDFI--------ESDSA 116 LRP + I + SG I G S E+ Sbjct: 17 LRPQIRLRITQATPLMPPRRLQSGPSKIQTSGARAHLAAAPASTPPAAGGGLYSAETYEL 76 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + + VLD+ VRP + DGGD+ DG++ L + GAC CPS++ T+K G+ +L Sbjct: 77 TAENVDRVLDD-VRPYLIADGGDVTVASVEDGVISLKLEGACGSCPSSTTTMKMGIERVL 135 Query: 177 NHFVPE-VKDIRTV 189 + VKDIR V Sbjct: 136 KEKFGDAVKDIRQV 149 >gi|218778425|ref|YP_002429743.1| nitrogen-fixing NifU domain protein [Desulfatibacillum alkenivorans AK-01] gi|218759809|gb|ACL02275.1| nitrogen-fixing NifU domain protein [Desulfatibacillum alkenivorans AK-01] Length = 74 Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + +++K +D +RP + RDGGD+ DG+V + + GAC GCP + +TLK G+ Sbjct: 1 MKEQVKAAIDE-IRPTLQRDGGDVELVEVGDDGVVKVRLVGACKGCPMSQQTLKNGIEKY 59 Query: 176 LNHFVPEVKDIRTV 189 + +P VK + V Sbjct: 60 MKKNIPGVKSVEGV 73 >gi|83816071|ref|YP_445990.1| hypothetical protein SRU_1878 [Salinibacter ruber DSM 13855] gi|294507901|ref|YP_003571959.1| conserved hypothetical protein containing thioredoxin-like domain [Salinibacter ruber M8] gi|83757465|gb|ABC45578.1| conserved hypothetical protein [Salinibacter ruber DSM 13855] gi|294344229|emb|CBH25007.1| conserved hypothetical protein containing thioredoxin-like domain [Salinibacter ruber M8] Length = 142 Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 2/86 (2%) Query: 4 QTEDTPNPATLKFIPGQ-VVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 Q E TPNP +LKF L G +S+A EA PLA R+F + G+ V+ F+T Sbjct: 56 QAESTPNPNSLKFTTDDGPFLSGGVAAYSSADEAAEDPLARRLFGVSGVDDVFITPQFVT 115 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFIS 87 V K DW ++P V ++ EH + Sbjct: 116 VSKAPSVDWGSVKPDVETILAEHLEA 141 >gi|193215039|ref|YP_001996238.1| nitrogen-fixing NifU domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193088516|gb|ACF13791.1| nitrogen-fixing NifU domain protein [Chloroherpeton thalassium ATCC 35110] Length = 95 Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Query: 98 GDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRG 156 + + + ++ + + R+ E L N +RP + DGGD G + +V L + G Sbjct: 3 AKNEGNPVQDKQYLPGNDPIYARVTEAL-NSIRPYLQADGGDCELVGITDEQVVDLRLVG 61 Query: 157 ACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 AC CP ++ TL+ GV + VPE+ + Sbjct: 62 ACGSCPMSAMTLRAGVEQAIKRAVPEIVRVEA 93 >gi|213865552|ref|ZP_03387671.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 169 Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 64/170 (37%), Gaps = 15/170 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ +L Sbjct: 3 RISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTALKFDLLT 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ L +++ Sbjct: 63 AYVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYALQSQI 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 P +A GG + +G L G C+GC TLK G+ + Sbjct: 120 NPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLKEGIRETVAE 169 >gi|226225813|ref|YP_002759919.1| hypothetical protein GAU_0407 [Gemmatimonas aurantiaca T-27] gi|226089004|dbj|BAH37449.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 296 Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + + R+ V++N +RP GGD+ VF+ + G+C+GC +S TL+ G+ Sbjct: 100 ADMRTRVARVVEN-LRPYTQSHGGDVTLVDVTSDTVFVKLSGSCNGCSMSSVTLRNGIEE 158 Query: 175 ILNHFVPEVKDIRTV 189 L VPE+ I V Sbjct: 159 ALKEQVPEITRIEVV 173 >gi|326526691|dbj|BAK00734.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 225 Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ VLD VRP + DGG++V +V L ++GAC CP++ T+K G+ L Sbjct: 75 TAENVELVLDE-VRPYLMADGGNVVLHEIDGNVVRLKLQGACGSCPASVTTMKMGIERRL 133 Query: 177 NHFVPEVKDIRTV 189 +PE+ + + Sbjct: 134 MEKIPEIVAVEPI 146 Score = 45.6 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Query: 119 QRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + I++VLD +RP ++ GG + F + IV + + G +G T++ + L Sbjct: 158 ENIEKVLDE-IRPYLSGTGGGELEFVSIEEPIVKVRLTGPAAG----VMTVRVALTQKLR 212 Query: 178 HFVPEVKDIR 187 +P++ ++ Sbjct: 213 EKIPKIAAVQ 222 >gi|222624810|gb|EEE58942.1| hypothetical protein OsJ_10617 [Oryza sativa Japonica Group] Length = 224 Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 18/134 (13%) Query: 73 LRPPVLGMIMEH--------FISGDPIIHNGGLGDMKLDDMGSGDFI--------ESDSA 116 LRP + I + SG I G S E+ Sbjct: 17 LRPQIRLRITQATPLMPPRRLQSGPSKIQTSGARAHLAAAPASTPPAAGGGLYSAETYEL 76 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + + VLD+ VRP + DGGD+ DG++ L + GAC CPS++ T+K G+ +L Sbjct: 77 TAENVDRVLDD-VRPYLIADGGDVTVASVEDGVISLKLEGACGSCPSSTTTMKMGIERVL 135 Query: 177 NHFVPE-VKDIRTV 189 + VKDIR V Sbjct: 136 KEKFGDAVKDIRQV 149 Score = 35.5 bits (81), Expect = 3.6, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 9/72 (12%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 Q + LD +RPA+A GG + + G P + G+ Sbjct: 158 EPTPQAVNGHLDI-LRPAIANYGGSVEVVAVDGEDCLVRYEG-----PESIG---SGIKA 208 Query: 175 ILNHFVPEVKDI 186 + P++ ++ Sbjct: 209 AIKEKFPDITNV 220 >gi|323704659|ref|ZP_08116237.1| nitrogen-fixing NifU domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323536121|gb|EGB25894.1| nitrogen-fixing NifU domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 73 Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 2/73 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + +R++EVL +RP++ DGGD+ DG+V + + GAC GCP A TLK G+ Sbjct: 1 MRERVEEVL-KLLRPSLQADGGDVELVDVTDDGVVQVRLTGACGGCPFAVMTLKEGIERA 59 Query: 176 LNHFVPEVKDIRT 188 + +PEVK++ Sbjct: 60 IKEEIPEVKEVVA 72 >gi|302340763|ref|YP_003805969.1| nitrogen-fixing NifU domain protein [Spirochaeta smaragdinae DSM 11293] gi|301637948|gb|ADK83375.1| nitrogen-fixing NifU domain protein [Spirochaeta smaragdinae DSM 11293] Length = 77 Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 2/75 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN 174 + ++K+ + + +RP++ DGGDI +G V + + GAC+GCP A TLK GV Sbjct: 4 ELEGKVKKAIQD-IRPSLQADGGDIELVTVGENGKVSVRLTGACNGCPMAQITLKQGVER 62 Query: 175 ILNHFVPEVKDIRTV 189 L +PE+K + V Sbjct: 63 YLKETIPEIKSVDAV 77 >gi|194334614|ref|YP_002016474.1| nitrogen-fixing NifU domain-containing protein [Prosthecochloris aestuarii DSM 271] gi|194312432|gb|ACF46827.1| nitrogen-fixing NifU domain protein [Prosthecochloris aestuarii DSM 271] Length = 86 Score = 99.1 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 106 GSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSA 164 S ++ + R+ L++ VRP + DGGD G +D +V + + GAC CP + Sbjct: 3 TSKQYLPDTDPLYDRVINALED-VRPYLQADGGDCQLVGITKDMVVDVKLLGACGSCPMS 61 Query: 165 SETLKYGVANILNHFVPEVKDIRTV 189 + TL+ GV + +PEV + +V Sbjct: 62 TLTLRAGVEQAVKKAIPEVARVESV 86 >gi|296449646|ref|ZP_06891419.1| NifU family protein [Clostridium difficile NAP08] gi|296878033|ref|ZP_06902051.1| NifU family protein [Clostridium difficile NAP07] gi|296261502|gb|EFH08324.1| NifU family protein [Clostridium difficile NAP08] gi|296430988|gb|EFH16817.1| NifU family protein [Clostridium difficile NAP07] Length = 95 Score = 99.1 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 49/75 (65%), Gaps = 1/75 (1%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN 174 A+ +++++VL+ +++P + RDGGD+ +G+V + ++GACSGCP A+ T+K + N Sbjct: 21 AMREKVEKVLEEKIKPVLQRDGGDVELIDVNENGVVLVRLQGACSGCPGATMTIKAIIEN 80 Query: 175 ILNHFVPEVKDIRTV 189 +L VP V + V Sbjct: 81 VLVSEVPGVTQVLGV 95 >gi|239828215|ref|YP_002950839.1| nitrogen-fixing NifU domain protein [Geobacillus sp. WCH70] gi|239808508|gb|ACS25573.1| nitrogen-fixing NifU domain protein [Geobacillus sp. WCH70] Length = 78 Score = 99.1 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +D + ++++EVLD ++RP + RDGGD DG+V L + GAC CPS++ TLK G+ Sbjct: 2 TDQEIKEQVQEVLD-KLRPFLLRDGGDCELIDVEDGVVKLRLLGACGSCPSSTITLKAGI 60 Query: 173 ANIL 176 L Sbjct: 61 ERAL 64 >gi|296005287|ref|XP_002808974.1| NifU-like protein, putative [Plasmodium falciparum 3D7] gi|225631861|emb|CAX64255.1| NifU-like protein, putative [Plasmodium falciparum 3D7] Length = 192 Score = 98.7 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 24/185 (12%) Query: 28 IHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT-------VGKDQYD---WEHLRP-- 75 IHF NA S R F +V F ++IT V K + + + Sbjct: 2 IHFKNAFSYRHSLCMMRTFHFNIYKNVKF-SNYITKALNKYIVTKQSTNQRFFSIINNSD 60 Query: 76 ------PVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ---RIKEVLD 126 + I + D N L+ + + + + +++ IK +++ Sbjct: 61 YINYINEINKFIDIFEKNVDNKSTNEDHIIPVLEKIKNEKIYKDNEDIMEIISSIKLLIE 120 Query: 127 NRVRPAVARDGGDIVFK--GYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVK 184 RVRP + DGGDI F GIV++ + GAC C + TL+Y + N+L +++ E+K Sbjct: 121 KRVRPIILNDGGDIKFICFDVDKGIVYVQLEGACVTCAQSEVTLQYMIKNMLTYYISEIK 180 Query: 185 DIRTV 189 +I+ V Sbjct: 181 EIKNV 185 >gi|78186286|ref|YP_374329.1| NifU protein, putative [Chlorobium luteolum DSM 273] gi|78166188|gb|ABB23286.1| NifU protein, putative [Chlorobium luteolum DSM 273] Length = 89 Score = 98.7 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 106 GSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSA 164 S D++ + A+ R+ L+ VRP + DGGD G +D +V + + GAC CP + Sbjct: 6 TSKDYLPNSDALYDRVIAALET-VRPYLQVDGGDCQLVGITKDMVVDVKLLGACGSCPMS 64 Query: 165 SETLKYGVANILNHFVPEVKDIRTV 189 + TL+ GV + +PE+ + +V Sbjct: 65 TLTLRAGVEQAIKKAIPEIVRVESV 89 >gi|212640233|ref|YP_002316753.1| thioredoxin-like protein [Anoxybacillus flavithermus WK1] gi|212561713|gb|ACJ34768.1| Thioredoxin-like protein [Anoxybacillus flavithermus WK1] Length = 80 Score = 98.7 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +D + Q+++EVLD ++RP + RDGGD DG+V L + GAC CPS++ TLK G+ Sbjct: 4 ADQDIKQQVQEVLD-KLRPFLLRDGGDCELVDVEDGVVKLRLLGACGSCPSSTITLKAGI 62 Query: 173 ANIL 176 L Sbjct: 63 ERAL 66 >gi|83815451|ref|YP_444955.1| hypothetical protein SRU_0820 [Salinibacter ruber DSM 13855] gi|294506813|ref|YP_003570871.1| hypothetical protein SRM_00998 [Salinibacter ruber M8] gi|83756845|gb|ABC44958.1| conserved domain protein [Salinibacter ruber DSM 13855] gi|294343141|emb|CBH23919.1| conserved hypothetical protein [Salinibacter ruber M8] Length = 101 Score = 98.7 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 2/91 (2%) Query: 100 MKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGAC 158 D G D + I+E LD +RP + DGG + D +V L + GAC Sbjct: 6 PSSPDTEDGSSPHIDPELRDNIEEALDT-IRPYLMADGGSVRLLNVTADYVVELELLGAC 64 Query: 159 SGCPSASETLKYGVANILNHFVPEVKDIRTV 189 CP ++ TL+ G+ L VP+VK + V Sbjct: 65 GSCPMSTMTLRAGIEQALKRSVPKVKRVEAV 95 >gi|242067665|ref|XP_002449109.1| hypothetical protein SORBIDRAFT_05g005270 [Sorghum bicolor] gi|241934952|gb|EES08097.1| hypothetical protein SORBIDRAFT_05g005270 [Sorghum bicolor] Length = 225 Score = 98.7 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ VLD VRP + DGG++ +V L ++GAC CP++ T+K G+ L Sbjct: 75 TAENVEMVLDE-VRPYLMADGGNVALHEIDGNMVRLKLQGACGSCPASVTTMKMGIERRL 133 Query: 177 NHFVPEVKDIRTV 189 +PE+ + + Sbjct: 134 MEKIPEIVAVEPI 146 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Query: 119 QRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + I++VLD +RP +A GG + F + IV + + G +G T++ + L Sbjct: 158 ENIEKVLDE-IRPYLAGTGGGELEFVTIEEPIVKVRLTGPAAG----VMTVRVALTQKLR 212 Query: 178 HFVPEVKDIR 187 +P++ ++ Sbjct: 213 EKIPKIAAVQ 222 >gi|331006512|ref|ZP_08329811.1| hypothetical protein IMCC1989_384 [gamma proteobacterium IMCC1989] gi|330419680|gb|EGG94047.1| hypothetical protein IMCC1989_384 [gamma proteobacterium IMCC1989] Length = 193 Score = 98.7 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 32/78 (41%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYG 171 DS V RI VL N V P +A GG + + DG L G C GC + S TLK G Sbjct: 105 DDSPVEDRINYVLYNEVNPGLASHGGQVDLEDVTEDGFAILKFGGGCQGCSAVSLTLKEG 164 Query: 172 VANILNHFVPEVKDIRTV 189 V L VPE+K ++ V Sbjct: 165 VEKTLLEKVPELKGVKDV 182 >gi|313675047|ref|YP_004053043.1| nitrogen-fixing nifu domain protein [Marivirga tractuosa DSM 4126] gi|312941745|gb|ADR20935.1| nitrogen-fixing NifU domain protein [Marivirga tractuosa DSM 4126] Length = 91 Score = 98.7 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 V+ RI++ LD+ +RP + DGG++ +G++ L + GAC CP ++ TLK GV Sbjct: 2 DVLDRIEKALDS-IRPYLEADGGNVRILDLNEGVLRLELLGACGNCPMSTMTLKAGVEEA 60 Query: 176 LNHFVPEVKDIRTV 189 + VPEV + V Sbjct: 61 VKKSVPEVTSVEAV 74 >gi|261420397|ref|YP_003254079.1| nitrogen-fixing NifU domain protein [Geobacillus sp. Y412MC61] gi|297528899|ref|YP_003670174.1| nitrogen-fixing NifU domain protein [Geobacillus sp. C56-T3] gi|319768064|ref|YP_004133565.1| nitrogen-fixing NifU domain protein [Geobacillus sp. Y412MC52] gi|261376854|gb|ACX79597.1| nitrogen-fixing NifU domain protein [Geobacillus sp. Y412MC61] gi|297252151|gb|ADI25597.1| nitrogen-fixing NifU domain protein [Geobacillus sp. C56-T3] gi|317112930|gb|ADU95422.1| nitrogen-fixing NifU domain protein [Geobacillus sp. Y412MC52] Length = 78 Score = 98.7 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +D + ++++EVLD ++RP + RDGGD DG+V L + GAC CPS++ TLK G+ Sbjct: 2 TDQEIKEQVQEVLD-KLRPFLLRDGGDCELVDVEDGVVKLRLLGACGSCPSSTITLKAGI 60 Query: 173 ANIL 176 L Sbjct: 61 ERAL 64 >gi|88798134|ref|ZP_01113721.1| Thioredoxin-like protein [Reinekea sp. MED297] gi|88779331|gb|EAR10519.1| Thioredoxin-like protein [Reinekea sp. MED297] Length = 196 Score = 98.7 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 11/123 (8%) Query: 78 LGMIMEHFISGD-PIIHNGGLGDMKLDDMGSGDFIE---------SDSAVVQRIKEVLDN 127 L I + P + + K G DS + ++ +L Sbjct: 62 LSHIRVYLERNSLPYLDEAEVDYAKDRMGGQLTIKAPNAKMPKVTKDSPLPDQVNYILYT 121 Query: 128 RVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 + P +A GGD+ + D + L G C GC + TLK GV L VP++ + Sbjct: 122 EINPGLAAHGGDVSLEELTDDNVAVLRFGGGCQGCSAVDMTLKDGVEKTLMERVPQLAGV 181 Query: 187 RTV 189 R V Sbjct: 182 RDV 184 >gi|134300123|ref|YP_001113619.1| NifU domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052823|gb|ABO50794.1| nitrogen-fixing NifU domain protein [Desulfotomaculum reducens MI-1] Length = 74 Score = 98.7 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANI 175 + +++KE L+ +VRP + RDGGD+ F + G+V + +RGAC CP A TLK G+ + Sbjct: 1 MKEQVKEALE-QVRPFLQRDGGDVEFVDCDEKGVVKVKLRGACGSCPGALYTLKNGIERV 59 Query: 176 LNHFVPEVKDIRTV 189 L VP V ++ V Sbjct: 60 LKQQVPGVTEVVRV 73 >gi|225849734|ref|YP_002729968.1| hypothetical protein PERMA_0171 [Persephonella marina EX-H1] gi|225645990|gb|ACO04176.1| conserved domain protein [Persephonella marina EX-H1] Length = 91 Score = 98.7 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +++EVL+ ++RP + DGGD+ DG V++ + G+C GC + TLK G+ L Sbjct: 14 AKVEEVLE-QIRPMLRFDGGDVELVDIGEDGTVYVRLMGSCHGCAMSLVTLKGGIEMKLK 72 Query: 178 HFVPEVKDIRTV 189 +PEVK++ V Sbjct: 73 EAIPEVKEVVAV 84 >gi|115452669|ref|NP_001049935.1| Os03g0314700 [Oryza sativa Japonica Group] gi|108707815|gb|ABF95610.1| NifU-like domain containing protein, expressed [Oryza sativa Japonica Group] gi|113548406|dbj|BAF11849.1| Os03g0314700 [Oryza sativa Japonica Group] gi|215697309|dbj|BAG91303.1| unnamed protein product [Oryza sativa Japonica Group] Length = 224 Score = 98.3 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 18/134 (13%) Query: 73 LRPPVLGMIMEH--------FISGDPIIHNGGLGDMKLDDMGSGDFI--------ESDSA 116 LRP + I + SG I G S E+ Sbjct: 17 LRPQIRLRITQATPLMPPRRLQSGPSKIQTSGARAHLAAAPASTPPAAGGGLYSAETYEL 76 Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + + VLD+ VRP + DGGD+ DG++ L + GAC CPS++ T+K G+ +L Sbjct: 77 TAENVDRVLDD-VRPYLIADGGDVTVASVEDGVISLKLEGACGSCPSSTTTMKMGIERVL 135 Query: 177 NHFVPE-VKDIRTV 189 + VKDIR V Sbjct: 136 KEKFGDAVKDIRQV 149 Score = 35.2 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 9/72 (12%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 Q + LD +RPA+A GG + + G P + G+ Sbjct: 158 EPTPQAVNGHLDI-LRPAIANYGGSVEVVAVDGEDCLVRYEG-----PESIG---SGIKA 208 Query: 175 ILNHFVPEVKDI 186 + P++ ++ Sbjct: 209 AIKEKFPDITNV 220 >gi|189500939|ref|YP_001960409.1| nitrogen-fixing NifU domain-containing protein [Chlorobium phaeobacteroides BS1] gi|189496380|gb|ACE04928.1| nitrogen-fixing NifU domain protein [Chlorobium phaeobacteroides BS1] Length = 86 Score = 98.3 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASET 167 D++ + R+ + L+ VRP + DGGD G +D +V + + GAC CP ++ T Sbjct: 6 DYLPDTDPLYDRVIKALEE-VRPYLQADGGDCQLVGITKDMLVDVKLLGACGSCPMSTLT 64 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 L+ GV + VPE+ + V Sbjct: 65 LRAGVEQAIKKAVPEIARVEAV 86 >gi|95929342|ref|ZP_01312085.1| nitrogen-fixing NifU-like [Desulfuromonas acetoxidans DSM 684] gi|95134458|gb|EAT16114.1| nitrogen-fixing NifU-like [Desulfuromonas acetoxidans DSM 684] Length = 74 Score = 98.3 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + ++I+ LD VRP + DGG++ DG+V + + GAC CP ++ TLK G+ I Sbjct: 1 MKEQIEAALDE-VRPTLLADGGNVELVDVSDDGVVSVKLVGACGSCPMSTVTLKMGIERI 59 Query: 176 LNHFVPEVKDIRTV 189 L VP VK++ V Sbjct: 60 LLEKVPGVKEVVQV 73 >gi|328949227|ref|YP_004366564.1| nitrogen-fixing NifU domain-containing protein [Treponema succinifaciens DSM 2489] gi|328449551|gb|AEB15267.1| nitrogen-fixing NifU domain-containing protein [Treponema succinifaciens DSM 2489] Length = 78 Score = 98.3 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGV 172 D A++ ++KE L+ RP + DGGD+ F D V L + GAC CP A+ TLK G+ Sbjct: 3 DEALIAKVKETLE-AFRPQLNADGGDMEFINIDDENKVHLKLTGACGSCPMATMTLKMGI 61 Query: 173 ANILNHFVPEVKDIRT 188 L PE+ ++ Sbjct: 62 ERYLKETCPEISEVVQ 77 >gi|145219268|ref|YP_001129977.1| NifU domain-containing protein [Prosthecochloris vibrioformis DSM 265] gi|145205432|gb|ABP36475.1| nitrogen-fixing NifU domain protein [Chlorobium phaeovibrioides DSM 265] Length = 86 Score = 98.3 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 106 GSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSA 164 S D++ + A+ R+ L+ VRP + DGGD G +D +V + + GAC CP + Sbjct: 3 TSKDYLPNSDALYDRVIAALET-VRPYLQVDGGDCQLVGISKDMVVDVKLLGACGSCPMS 61 Query: 165 SETLKYGVANILNHFVPEVKDIRTV 189 + TL+ GV + +PE+ + +V Sbjct: 62 TLTLRAGVEQAIKKAIPEIVRVESV 86 >gi|302766397|ref|XP_002966619.1| hypothetical protein SELMODRAFT_230831 [Selaginella moellendorffii] gi|300166039|gb|EFJ32646.1| hypothetical protein SELMODRAFT_230831 [Selaginella moellendorffii] Length = 144 Score = 98.3 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%) Query: 124 VLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEV 183 VLD VRP + DGG++ + +V L ++GAC CPS+ T+K G+ L +PE+ Sbjct: 2 VLDE-VRPYLMSDGGNVALEEIDGLVVKLKLQGACGSCPSSLMTMKMGIEARLKEKIPEI 60 Query: 184 KDIRTV 189 + V Sbjct: 61 IGVEQV 66 Score = 37.9 bits (87), Expect = 0.75, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDS--AVVQRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIV 150 L + + +G ++++ + + + + + +RP + GG + +V Sbjct: 50 EARLKEKIPEIIGVEQVQDTETGLELTEENVDKILSEIRPYLVGTGGGELTLVKIDGPVV 109 Query: 151 FLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 + + G +G T++ V L +P + ++ Sbjct: 110 KIRIEGPAAG----VMTVRVAVTQKLREKIPMIAAVQ 142 >gi|163781905|ref|ZP_02176905.1| nifU-like domain protein [Hydrogenivirga sp. 128-5-R1-1] gi|159883125|gb|EDP76629.1| nifU-like domain protein [Hydrogenivirga sp. 128-5-R1-1] Length = 87 Score = 98.3 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN 174 + +++VLD +RPA+ DGGD+ DG V + + GACSGC + TLK G+ Sbjct: 4 PTREEVEKVLDE-IRPALRFDGGDVELVDIQEDGTVLVRLVGACSGCGMSVLTLKAGIER 62 Query: 175 ILNHFVPEVKDIRTV 189 L PE+K+++ V Sbjct: 63 ALKQKFPEIKEVKDV 77 >gi|193212089|ref|YP_001998042.1| nitrogen-fixing NifU domain-containing protein [Chlorobaculum parvum NCIB 8327] gi|193085566|gb|ACF10842.1| nitrogen-fixing NifU domain protein [Chlorobaculum parvum NCIB 8327] Length = 83 Score = 98.3 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASET 167 D++ + + R+ L+ VRP + DGGD G +D +V + + GAC CP ++ T Sbjct: 3 DYLPNSDPLYDRVISALET-VRPYLQVDGGDCQLIGITKDMVVDVKLLGACGSCPMSTLT 61 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 L+ GV + +PE+ + V Sbjct: 62 LRAGVEQAIKKAIPEIARVEQV 83 >gi|115487614|ref|NP_001066294.1| Os12g0176200 [Oryza sativa Japonica Group] gi|75147032|sp|Q84LK7|NIFU1_ORYSJ RecName: Full=NifU-like protein 1, chloroplastic; AltName: Full=OsNifu1; Flags: Precursor gi|30698492|dbj|BAC76603.1| NifU1 [Oryza sativa Japonica Group] gi|77553807|gb|ABA96603.1| nitrogen fixation protein, putative, expressed [Oryza sativa Japonica Group] gi|113648801|dbj|BAF29313.1| Os12g0176200 [Oryza sativa Japonica Group] Length = 226 Score = 98.3 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 ++ VLD +VRP + DGGD+ +V L ++GAC CPS+ T+K G+ L Sbjct: 79 NVESVLD-QVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIERRLMEK 137 Query: 180 VPEVKDIRTV 189 +P+V + V Sbjct: 138 IPDVAAVEPV 147 Score = 44.0 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 7/90 (7%) Query: 100 MKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGAC 158 + + E+ + + E + N +RP +A GG + F + IV + + G Sbjct: 139 PDVAAVEPVTDKETGLELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTG-- 196 Query: 159 SGCPSASE-TLKYGVANILNHFVPEVKDIR 187 P+A T++ V+ L +P ++ ++ Sbjct: 197 ---PAAVVRTVRIAVSKKLREKIPSIQIVQ 223 >gi|189345962|ref|YP_001942491.1| nitrogen-fixing NifU domain protein [Chlorobium limicola DSM 245] gi|189340109|gb|ACD89512.1| nitrogen-fixing NifU domain protein [Chlorobium limicola DSM 245] Length = 86 Score = 98.3 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 106 GSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSA 164 S D++ + A+ R+ L+ VRP + DGGD G +D +V + + GAC CP + Sbjct: 3 TSKDYLPNSDALYDRVIAALET-VRPYLQVDGGDCQLVGITKDMVVDVKLLGACGSCPMS 61 Query: 165 SETLKYGVANILNHFVPEVKDIRTV 189 + TL+ GV + +PE+ + +V Sbjct: 62 TITLRAGVEQAIKKAIPEIARVESV 86 >gi|56421496|ref|YP_148814.1| nitrogen fixation NifU protein [Geobacillus kaustophilus HTA426] gi|138896548|ref|YP_001127001.1| nitrogen fixation protein NifU [Geobacillus thermodenitrificans NG80-2] gi|56381338|dbj|BAD77246.1| nitrogen fixation protein (NifU protein) [Geobacillus kaustophilus HTA426] gi|134268061|gb|ABO68256.1| Nitrogen fixation protein NifU [Geobacillus thermodenitrificans NG80-2] Length = 80 Score = 98.3 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +D + ++++EVLD ++RP + RDGGD DG+V L + GAC CPS++ TLK G+ Sbjct: 4 TDQEIKEQVQEVLD-KLRPFLLRDGGDCELVDVEDGVVKLRLLGACGSCPSSTITLKAGI 62 Query: 173 ANIL 176 L Sbjct: 63 ERAL 66 >gi|328954876|ref|YP_004372209.1| nitrogen-fixing NifU domain protein [Coriobacterium glomerans PW2] gi|328455200|gb|AEB06394.1| nitrogen-fixing NifU domain protein [Coriobacterium glomerans PW2] Length = 92 Score = 98.3 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILN 177 + +K VLD +RP + DGGD+ F G D G+V L ++GAC+GCP +S TL G+ +L Sbjct: 6 EHLKRVLDE-IRPNLQADGGDLTFVGVDDDGVVQLELQGACAGCPMSSMTLSMGIERVLK 64 Query: 178 HFVPEVKDIRTV 189 V V + V Sbjct: 65 EHVAGVTRVEAV 76 >gi|222616724|gb|EEE52856.1| hypothetical protein OsJ_35404 [Oryza sativa Japonica Group] Length = 219 Score = 97.9 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 ++ VLD +VRP + DGGD+ +V L ++GAC CPS+ T+K G+ L Sbjct: 72 NVESVLD-QVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIERRLMEK 130 Query: 180 VPEVKDIRTV 189 +P+V + V Sbjct: 131 IPDVAAVEPV 140 Score = 44.0 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 7/90 (7%) Query: 100 MKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGAC 158 + + E+ + + E + N +RP +A GG + F + IV + + G Sbjct: 132 PDVAAVEPVTDKETGLELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTG-- 189 Query: 159 SGCPSASE-TLKYGVANILNHFVPEVKDIR 187 P+A T++ V+ L +P ++ ++ Sbjct: 190 ---PAAVVRTVRIAVSKKLREKIPSIQIVQ 216 >gi|218186519|gb|EEC68946.1| hypothetical protein OsI_37662 [Oryza sativa Indica Group] Length = 221 Score = 97.9 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 ++ VLD +VRP + DGGD+ +V L ++GAC CPS+ T+K G+ L Sbjct: 74 NVESVLD-QVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIERRLMEK 132 Query: 180 VPEVKDIRTV 189 +P+V + V Sbjct: 133 IPDVAAVEPV 142 >gi|307249357|ref|ZP_07531351.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307260607|ref|ZP_07542299.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306858651|gb|EFM90713.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306869684|gb|EFN01469.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 215 Score = 97.9 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 61/181 (33%), Gaps = 16/181 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF E + RIF + PG + G + + + G Sbjct: 27 ISEAAQTHFRRLLEQQEENTNIRIFVVNPGTPNAECGVSYCPPN--AVEETDTQFEYNGF 84 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 P + + D D MGS + D+ ++R+ V+ +V Sbjct: 85 SAFVDEISLPFLDEAEI-DYVTDPMGSQLTLKAPNAKMRKVADDAPFIERLDYVIQTQVN 143 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRT 188 P +A GG + D L G C+GC TLK G+ L P E+ ++ Sbjct: 144 PQLASHGGRVTLIEVTEDKYAILQFGGGCNGCSMVDVTLKEGIEKQLLAMFPDELAGVKD 203 Query: 189 V 189 V Sbjct: 204 V 204 >gi|117924033|ref|YP_864650.1| NifU domain-containing protein [Magnetococcus sp. MC-1] gi|117607789|gb|ABK43244.1| nitrogen-fixing NifU domain protein [Magnetococcus sp. MC-1] Length = 76 Score = 97.9 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLKYGVANI 175 + ++I VL +RP + RDGGD+ F D +V + +RGAC CP A TLK G+ + Sbjct: 1 MKEKILAVLAE-IRPMLQRDGGDVEFVDLTEDNVVQVRLRGACGSCPGAMMTLKGGIERL 59 Query: 176 LNHFVPEVKDIRTV 189 + +PEV + V Sbjct: 60 MKERIPEVHSVENV 73 >gi|258516727|ref|YP_003192949.1| nitrogen-fixing NifU domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257780432|gb|ACV64326.1| nitrogen-fixing NifU domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 73 Score = 97.9 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANI 175 + ++++EVL +VRP + RDGGD+ DG+V + ++GACSG P A+ TLK G+ + Sbjct: 1 MREKVEEVL-GKVRPYLQRDGGDVELVDITPDGVVQVKLKGACSGUPGATITLKQGIERV 59 Query: 176 LNHFVPEVKDIRTV 189 L VPEVK + V Sbjct: 60 LKQEVPEVKGVVQV 73 >gi|206890081|ref|YP_002249266.1| thioredoxin family protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742019|gb|ACI21076.1| thioredoxin family protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 74 Score = 97.9 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++++VL ++R + DGG+I +D IV++ ++GAC CP A+ TLK V L Sbjct: 5 AKVEQVL-GKIRVGLMADGGNIDLVDIKDNIVYVKLKGACGTCPMATLTLKNWVEKTLKS 63 Query: 179 FVPEVKDIRTV 189 +PEVK++ V Sbjct: 64 EIPEVKEVVAV 74 >gi|32034535|ref|ZP_00134699.1| COG0316: Uncharacterized conserved protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207637|ref|YP_001052862.1| putative DNA uptake protein [Actinobacillus pleuropneumoniae L20] gi|165975605|ref|YP_001651198.1| putative DNA uptake protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149420|ref|YP_001967945.1| hypothetical protein APP7_0151 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249853|ref|ZP_07336057.1| putative DNA uptake protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303251973|ref|ZP_07338144.1| putative DNA uptake protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247135|ref|ZP_07529187.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307251678|ref|ZP_07533583.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256174|ref|ZP_07537961.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307262738|ref|ZP_07544365.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|150383442|sp|A3MYM1|NFUA_ACTP2 RecName: Full=Fe/S biogenesis protein nfuA gi|254767287|sp|B3GZZ1|NFUA_ACTP7 RecName: Full=Fe/S biogenesis protein nfuA gi|254767288|sp|B0BS54|NFUA_ACTPJ RecName: Full=Fe/S biogenesis protein nfuA gi|126096429|gb|ABN73257.1| hypothetical protein APL_0149 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875706|gb|ABY68754.1| transformation locus protein OrfG-like protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914551|gb|ACE60803.1| hypothetical protein APP7_0151 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649403|gb|EFL79588.1| putative DNA uptake protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651420|gb|EFL81572.1| putative DNA uptake protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306856384|gb|EFM88535.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306860875|gb|EFM92883.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306865355|gb|EFM97251.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306871883|gb|EFN03600.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 199 Score = 97.9 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 61/181 (33%), Gaps = 16/181 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF E + RIF + PG + G + + + G Sbjct: 11 ISEAAQTHFRRLLEQQEENTNIRIFVVNPGTPNAECGVSYCPPN--AVEETDTQFEYNGF 68 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 P + + D D MGS + D+ ++R+ V+ +V Sbjct: 69 SAFVDEISLPFLDEAEI-DYVTDPMGSQLTLKAPNAKMRKVADDAPFIERLDYVIQTQVN 127 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRT 188 P +A GG + D L G C+GC TLK G+ L P E+ ++ Sbjct: 128 PQLASHGGRVTLIEVTEDKYAILQFGGGCNGCSMVDVTLKEGIEKQLLAMFPDELAGVKD 187 Query: 189 V 189 V Sbjct: 188 V 188 >gi|257064210|ref|YP_003143882.1| thioredoxin-like protein [Slackia heliotrinireducens DSM 20476] gi|256791863|gb|ACV22533.1| thioredoxin-like protein [Slackia heliotrinireducens DSM 20476] Length = 76 Score = 97.6 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +RI+ VL+ +RP++ DGGD+ DG+V + + GAC+GCP + TL GV +L Sbjct: 6 ERIERVLE-LIRPSLQADGGDLELVDVGDDGVVTVHLTGACNGCPLSQLTLANGVRRVLK 64 Query: 178 HFVPEVKDIRTV 189 VP V D+R V Sbjct: 65 ERVPSVTDVRAV 76 >gi|224543029|ref|ZP_03683568.1| hypothetical protein CATMIT_02223 [Catenibacterium mitsuokai DSM 15897] gi|224524054|gb|EEF93159.1| hypothetical protein CATMIT_02223 [Catenibacterium mitsuokai DSM 15897] Length = 84 Score = 97.6 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E ++ IKEV+ ++RP + RDGGD+ F ++DGIV++ M GAC+GC T+K G Sbjct: 8 EIMEEKIEAIKEVIH-KLRPYLQRDGGDLEFVDFKDGIVYVHMLGACAGCMMLDSTIKDG 66 Query: 172 VANILNHFVPEVKDIRTV 189 V IL VP V +++ + Sbjct: 67 VEQILIEEVPGVIEVQAI 84 >gi|90408321|ref|ZP_01216485.1| hypothetical protein PCNPT3_13183 [Psychromonas sp. CNPT3] gi|90310552|gb|EAS38673.1| hypothetical protein PCNPT3_13183 [Psychromonas sp. CNPT3] Length = 193 Score = 97.6 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 65/181 (35%), Gaps = 14/181 (7%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF N + R+F I PG G + V + L Sbjct: 3 EITPVAQTHFKNLLAPQNEGTCIRVFVINPGTPKAECGVSYCPVEAVESSDTRLHFDGFD 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI---------ESDSAVVQRIKEVLDNRVR 130 +++ P + + + ++ D + D+ + +R++ V+ ++ Sbjct: 63 ALVDEIS--VPFLEDAFIDLVEEDTGTQLTLKAPNAKMRKVKDDAPLQERVEYVIQVQIN 120 Query: 131 PAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIRT 188 P +A GG I D + + G C+GC TLK G+ +L F E+ +R Sbjct: 121 PQLASHGGFIKLIELTEDKVAVIEFGGGCNGCSQVDLTLKDGIEKELLEEFSGELNAVRD 180 Query: 189 V 189 + Sbjct: 181 I 181 >gi|261493940|ref|ZP_05990448.1| HesB family protein [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494775|ref|ZP_05991254.1| HesB family protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309592|gb|EEY10816.1| HesB family protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310372|gb|EEY11567.1| HesB family protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 198 Score = 97.6 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 62/181 (34%), Gaps = 16/181 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ E + RIF + PG G + + + Sbjct: 10 ISDAAQAHFARLLEQQEEGTNIRIFVVNPGTPGAECGVSYCPPNAVEETDTEFKFNSFSA 69 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 ++ P + + D D MGS + D+ ++R+ V+ +V Sbjct: 70 FVDDIS--LPFLDEAEI-DYVTDPMGSQLTLKAPNAKMRKVADDAPFIERLDYVIQTQVN 126 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRT 188 P +A GG + D L G C+GC TLK G+ L P E+ ++ Sbjct: 127 PQLASHGGKVTLIEITEDKYAVLQFGGGCNGCSMVDVTLKEGIEKQLLAMFPDELVGVKD 186 Query: 189 V 189 + Sbjct: 187 I 187 >gi|254363181|ref|ZP_04979230.1| HesB family protein [Mannheimia haemolytica PHL213] gi|153095075|gb|EDN75626.1| HesB family protein [Mannheimia haemolytica PHL213] Length = 198 Score = 97.6 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 62/181 (34%), Gaps = 16/181 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ E + RIF + PG G + + + Sbjct: 10 ISDAAQAHFARLLEQQEEGTNIRIFVVNPGTPGAECGVSYCPPNAVEETDTEFKFNRFSA 69 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 ++ P + + D D MGS + D+ ++R+ V+ +V Sbjct: 70 FVDDIS--LPFLDEAEI-DYVTDPMGSQLTLKAPNAKMRKVADDAPFIERLDYVIQTQVN 126 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRT 188 P +A GG + D L G C+GC TLK G+ L P E+ ++ Sbjct: 127 PQLASHGGKVTLIEITEDKYAVLQFGGGCNGCSMVDVTLKEGIEKQLLAMFPDELVGVKD 186 Query: 189 V 189 + Sbjct: 187 I 187 >gi|90021654|ref|YP_527481.1| hypothetical protein Sde_2009 [Saccharophagus degradans 2-40] gi|89951254|gb|ABD81269.1| HesB/YadR/YfhF [Saccharophagus degradans 2-40] Length = 203 Score = 97.6 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASETLKYG 171 DS + RI VL N V P +A GG++ + D + + L G C GC + TLK G Sbjct: 115 EDSTIEDRINYVLYNEVNPGLAAHGGNVSLEAITDDMHIVLKFGGGCQGCSAVDMTLKQG 174 Query: 172 VANILNHFVPEVKDIRT 188 V L VPE+K +R Sbjct: 175 VEKTLMERVPEIKGVRD 191 >gi|148907013|gb|ABR16650.1| unknown [Picea sitchensis] Length = 465 Score = 97.6 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 2/76 (2%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + + VL N VRP + DGG++ DG++ L ++GAC CPS++ T+K G+ Sbjct: 318 DLTPENVDLVL-NDVRPYLVADGGNVEVASVEDGVISLRLQGACGTCPSSTTTMKMGIER 376 Query: 175 ILNHFVPEV-KDIRTV 189 +L +V K+IR V Sbjct: 377 VLKEKFGDVLKEIRQV 392 >gi|242278148|ref|YP_002990277.1| nitrogen-fixing NifU domain protein [Desulfovibrio salexigens DSM 2638] gi|242121042|gb|ACS78738.1| nitrogen-fixing NifU domain protein [Desulfovibrio salexigens DSM 2638] Length = 74 Score = 97.6 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANI 175 + +++ LD +VRP + DGG++ D GI + ++GAC GCP + TL+ + Sbjct: 1 MHDKVEAALD-KVRPLLQADGGNVELVEVTDKGIAKVRLQGACKGCPMSQITLRNAIERT 59 Query: 176 LNHFVPEVKDIRT 188 L +PE+K + Sbjct: 60 LLKEIPELKGVEP 72 >gi|119357807|ref|YP_912451.1| NifU domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119355156|gb|ABL66027.1| nitrogen-fixing NifU domain protein [Chlorobium phaeobacteroides DSM 266] Length = 86 Score = 97.6 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASET 167 ++ + A+ R+ L+ VRP + DGGD G +D +V + + GAC CP ++ T Sbjct: 6 TYLPNSDALYDRVIAALET-VRPYLQVDGGDCQLVGISKDMVVDVKLLGACGSCPMSTLT 64 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 L+ GV + +PE+ + +V Sbjct: 65 LRAGVEQAIKKAIPEIARVESV 86 >gi|294501686|ref|YP_003565386.1| NifU-like domain-containing protein [Bacillus megaterium QM B1551] gi|295707034|ref|YP_003600109.1| NifU-like domain-containing protein [Bacillus megaterium DSM 319] gi|294351623|gb|ADE71952.1| NifU-like domain protein [Bacillus megaterium QM B1551] gi|294804693|gb|ADF41759.1| NifU-like domain protein [Bacillus megaterium DSM 319] Length = 76 Score = 97.6 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 1/62 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 S + ++++EVL+ ++RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 2 SEMHEQVQEVLE-KLRPFLLRDGGDCELVDVEDGIVKLRLLGACGSCPSSTITLKAGIER 60 Query: 175 IL 176 L Sbjct: 61 AL 62 >gi|192359576|ref|YP_001983001.1| yhgI protein [Cellvibrio japonicus Ueda107] gi|190685741|gb|ACE83419.1| yhgI protein [Cellvibrio japonicus Ueda107] Length = 197 Score = 97.6 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYG 171 DS + RI VL N V P++A GG++ D I L G C GC S + TLK G Sbjct: 109 DDSPLEDRINYVLYNDVNPSLAAHGGNVSLVEVTEDMIAILKFGGGCQGCGSVALTLKQG 168 Query: 172 VANILNHFVPEVKDIRTV 189 + L +PE+K IR V Sbjct: 169 IEVQLMDKLPELKGIRDV 186 >gi|16080275|ref|NP_391102.1| iron-sulfur scaffold protein [Bacillus subtilis subsp. subtilis str. 168] gi|81342154|sp|O32119|YUTI_BACSU RecName: Full=Putative nitrogen fixation protein yutI gi|2635719|emb|CAB15212.1| putative iron-sulfur scaffold protein [Bacillus subtilis subsp. subtilis str. 168] Length = 111 Score = 97.2 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Query: 105 MGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSA 164 G + ++ + ++++EVLD ++RP + RDGGD +GIV L + GAC CPS+ Sbjct: 27 TTKGANVMTEVEMKEQVQEVLD-KLRPFLLRDGGDCELVDVDEGIVKLRLLGACGSCPSS 85 Query: 165 SETLKYGVANIL 176 + TLK G+ L Sbjct: 86 TITLKAGIERAL 97 >gi|309389827|gb|ADO77707.1| nitrogen-fixing NifU domain protein [Halanaerobium praevalens DSM 2228] Length = 73 Score = 97.2 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + + +++ +D ++RP++ DGGD+ GIV + + GACSGCP ++ T+K G+ Sbjct: 1 MKEEVQKYID-KIRPSLQADGGDVELIEVTEAGIVKVKLLGACSGCPMSTLTIKNGIEKT 59 Query: 176 LNHFVPEVKDIRTV 189 L V VK++++V Sbjct: 60 LKQNVEGVKEVQSV 73 >gi|322515071|ref|ZP_08068079.1| Fe/S-biogenesis protein NfuA [Actinobacillus ureae ATCC 25976] gi|322118951|gb|EFX91128.1| Fe/S-biogenesis protein NfuA [Actinobacillus ureae ATCC 25976] Length = 213 Score = 97.2 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 63/181 (34%), Gaps = 16/181 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF E + RIF + PG + G + ++ + + G Sbjct: 25 ISEAAQAHFRRLLEQQEENTNIRIFVVNPGSPNAECGVSYCP--QNAVEETDTQFEYNGF 82 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 P + + D D MGS + D+ ++R+ V+ +V Sbjct: 83 SAFVDEISLPFLDEAEI-DYVTDPMGSQLTLKAPNAKMRKVADDAPFIERLDYVIQTQVN 141 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRT 188 P +A GG + D L G C+GC TLK G+ L P E+ ++ Sbjct: 142 PQLASHGGRVTLIEVTEDKYAILQFGGGCNGCSMVDVTLKEGIEKQLLAMFPDELVGVKD 201 Query: 189 V 189 V Sbjct: 202 V 202 >gi|163310812|pdb|2JNV|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like Protein From Oryza Sativa Length = 91 Score = 97.2 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 ++ VLD +VRP + DGGD+ +V L ++GAC CPS+ T+K G+ L Sbjct: 9 NVESVLD-QVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIERRLMEK 67 Query: 180 VPEVKDIRTV 189 +P+V + V Sbjct: 68 IPDVAAVEPV 77 >gi|237734458|ref|ZP_04564939.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229382278|gb|EEO32369.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 75 Score = 97.2 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 1/70 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +++V+ N++RP + RDGGDI ++DGIV++ M GAC+GC ETLK GV IL Sbjct: 1 EVEKVI-NKLRPYLNRDGGDIELIDFKDGIVYVKMLGACAGCSMLDETLKDGVEQILMEE 59 Query: 180 VPEVKDIRTV 189 VP V ++ + Sbjct: 60 VPGVLGVQNI 69 >gi|323453984|gb|EGB09855.1| hypothetical protein AURANDRAFT_6483 [Aureococcus anophagefferens] Length = 114 Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 38/66 (57%) Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 E++ + +RP + DGG++ G +V L + GAC CPS++ T+K G+ L +PE Sbjct: 11 ELILDELRPYLMSDGGNVRIAGIEGPVVKLELEGACGTCPSSTMTMKMGLERRLKEAIPE 70 Query: 183 VKDIRT 188 + D+ Sbjct: 71 ISDVVQ 76 >gi|33151606|ref|NP_872959.1| putative DNA uptake protein [Haemophilus ducreyi 35000HP] gi|51701995|sp|Q7VNV0|NFUA_HAEDU RecName: Full=Fe/S biogenesis protein nfuA gi|33147826|gb|AAP95348.1| transformation locus protein OrfG-like protein [Haemophilus ducreyi 35000HP] Length = 199 Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 60/178 (33%), Gaps = 10/178 (5%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF E + RIF + PG S G + + + Sbjct: 11 ISEAAQAHFRCLLEQQEPNTHIRIFVVNPGTPSAECGVSYCPSNAVEETDTEFKFTGFSA 70 Query: 81 IMEHFI------SGDPIIHNGGLGDMKLDDMGSGDFI-ESDSAVVQRIKEVLDNRVRPAV 133 ++ + + + + L S D+ ++R+ V+ +V P + Sbjct: 71 FVDELSLPFLADAEIDYVTDQMGAQLTLKAPNSKMRKIADDAPFIERLDYVIQTQVNPQL 130 Query: 134 ARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRTV 189 A GG + D L G C+GC TLK G+ L P E+K ++ V Sbjct: 131 ASHGGQVTLIEVTEDKYAILQFGGGCNGCSMVDVTLKEGIEKQLLATFPTELKGVKDV 188 >gi|156088839|ref|XP_001611826.1| NifU-like domain containing protein [Babesia bovis] gi|154799080|gb|EDO08258.1| NifU-like domain containing protein [Babesia bovis] Length = 123 Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASET 167 + E+D VV IK ++D R+ P V +DGGD+ F Y G V++ + GAC GC + T Sbjct: 26 YSEADLEVVDSIKLLIDKRIAPVVRQDGGDVSFISYDPETGFVYVRLSGACVGCAQSDIT 85 Query: 168 LKYGVANILNHFVPEVKDI 186 LK+ + L H++ +V + Sbjct: 86 LKHMIQGTLCHYLDDVTGV 104 >gi|268325898|emb|CBH39486.1| conserved hypothetical protein, containing NifU-like domain [uncultured archaeon] Length = 116 Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 39/73 (53%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++KEV++ ++P A DGG I D L + GAC+GCP + TL V L Sbjct: 1 MKDKVKEVIEKELKPLFAVDGGGIELVSVDDSEAKLKLSGACAGCPMSQYTLANIVEVTL 60 Query: 177 NHFVPEVKDIRTV 189 VPE+K++ V Sbjct: 61 KEKVPELKEVILV 73 >gi|119503957|ref|ZP_01626038.1| hypothetical protein MGP2080_09413 [marine gamma proteobacterium HTCC2080] gi|119459960|gb|EAW41054.1| hypothetical protein MGP2080_09413 [marine gamma proteobacterium HTCC2080] Length = 191 Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKY 170 + DS + RI VL N V P++A GG++ D + L G C GC + S TLK Sbjct: 102 DVDSPIEDRINYVLYNEVNPSLAAHGGEVSLVEITDDALAILRFGGGCQGCSAVSMTLKD 161 Query: 171 GVANILNHFVPEVKDIRTV 189 GV L VPE+ +R V Sbjct: 162 GVEKTLLEQVPELSGVRDV 180 >gi|304317418|ref|YP_003852563.1| nitrogen-fixing NifU domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778920|gb|ADL69479.1| nitrogen-fixing NifU domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 73 Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 2/73 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + +R++EVL N +RP++ DGGD+ DG+V + + GAC GCP A TLK G+ Sbjct: 1 MKERVEEVL-NLLRPSLQADGGDVELIDVTDDGVVQVKLTGACGGCPFAVMTLKEGIERA 59 Query: 176 LNHFVPEVKDIRT 188 + +PEVK++ Sbjct: 60 IKEELPEVKEVVA 72 >gi|288818297|ref|YP_003432645.1| NifU-like protein [Hydrogenobacter thermophilus TK-6] gi|288787697|dbj|BAI69444.1| NifU-like protein [Hydrogenobacter thermophilus TK-6] gi|308751894|gb|ADO45377.1| nitrogen-fixing NifU domain protein [Hydrogenobacter thermophilus TK-6] Length = 87 Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 2/75 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN 174 + I+ VLD +RPA+ DGGD+ DG V + M GACSGC + TLK G+ Sbjct: 4 PTREEIEAVLDE-IRPALRFDGGDVELVDVLEDGTVLVRMMGACSGCGMSVLTLKAGIER 62 Query: 175 ILNHFVPEVKDIRTV 189 L + PE+K+++ + Sbjct: 63 ALKNKFPEIKEVKDI 77 >gi|213584942|ref|ZP_03366768.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 136 Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYG 171 D+ +++R++ L +++ P +A GG + +G L G C+GC TLK G Sbjct: 48 DDAPLMERVEYALQSQINPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLKEG 107 Query: 172 VANILNHFVPEVKDIRT 188 + L + PE+K +R Sbjct: 108 IEKQLLNEFPELKGVRD 124 >gi|213161411|ref|ZP_03347121.1| putative DNA uptake protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 131 Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYG 171 D+ +++R++ L +++ P +A GG + +G L G C+GC TLK G Sbjct: 43 DDAPLMERVEYALQSQINPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLKEG 102 Query: 172 VANILNHFVPEVKDIRT 188 + L + PE+K +R Sbjct: 103 IEKQLLNEFPELKGVRD 119 >gi|308808272|ref|XP_003081446.1| NifU-like domain-containing proteins (ISS) [Ostreococcus tauri] gi|116059909|emb|CAL55968.1| NifU-like domain-containing proteins (ISS) [Ostreococcus tauri] Length = 203 Score = 96.4 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 104 DMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPS 163 S +++ I++VLD VRP + DGGD+ V L ++GAC CPS Sbjct: 40 PPTSDGALDTLELTADNIEKVLDE-VRPYLIADGGDVELVEIDGLSVKLKLKGACGSCPS 98 Query: 164 ASETLKYGVANILNHFVPEVKDIRTV 189 ++ T++ G+ L +P++ ++ + Sbjct: 99 STVTMRMGIEKRLLEKIPDIMEVIQI 124 Score = 49.4 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 8/84 (9%) Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSAS- 165 D IE + +++ L N +RP +A GG + + IV + + G P+A Sbjct: 125 EDEIEGLPLTEENVEQTL-NEIRPYLAGTGGGVLELLDIEEPIVKVRLTG-----PAAKV 178 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 T++ V L +P + ++ V Sbjct: 179 MTVRVAVTQKLREKIPSIAAVQLV 202 >gi|319938275|ref|ZP_08012672.1| Fe/S-biogenesis protein NfuA [Coprobacillus sp. 29_1] gi|319806568|gb|EFW03226.1| Fe/S-biogenesis protein NfuA [Coprobacillus sp. 29_1] Length = 74 Score = 96.4 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + IK+V+ ++RP + RDGGDI F + +GIV++ M GAC+GC TLK GV IL Sbjct: 5 EEIKKVIH-KLRPYLQRDGGDIEFIKFEEGIVYVQMHGACAGCTMLDATLKDGVEQILIE 63 Query: 179 FVPEVKDIRTV 189 VP V +++ + Sbjct: 64 EVPGVLEVQAI 74 >gi|78047985|ref|YP_364160.1| thioredoxin-like protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927803|ref|ZP_08189028.1| thioredoxin-like protein [Xanthomonas perforans 91-118] gi|123584909|sp|Q3BSV3|NFUA_XANC5 RecName: Full=Fe/S biogenesis protein nfuA gi|78036415|emb|CAJ24106.1| thioredoxin-like protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541793|gb|EGD13310.1| thioredoxin-like protein [Xanthomonas perforans 91-118] Length = 199 Score = 96.4 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSAS 165 G+ +++V+R++ V++N + P +A GG + + DG+V L G C GC A Sbjct: 99 KGEAPAESASMVERVRWVVENEINPQLASHGGRVAVQEVSADGVVLLRFGGGCHGCGMAD 158 Query: 166 ETLKYGVANILNHFVPEVKDIRT 188 TLK G+ L VP V +R Sbjct: 159 VTLKQGIEKTLMGRVPGVTAVRD 181 >gi|156743727|ref|YP_001433856.1| NifU domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156235055|gb|ABU59838.1| nitrogen-fixing NifU domain protein [Roseiflexus castenholzii DSM 13941] Length = 291 Score = 96.4 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +V R+ VLD RP + GGD+ R+ +V++ + G+C+GC ++ TL+ + L Sbjct: 95 IVARVSRVLD-AARPYIRSHGGDVELVEVRENVVYVRLHGSCNGCSLSAVTLRNEIEAAL 153 Query: 177 NHFVPEVKDIRTV 189 VPE+ ++ V Sbjct: 154 RANVPEIVGVQVV 166 >gi|294625346|ref|ZP_06703982.1| thioredoxin-like protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664692|ref|ZP_06730025.1| thioredoxin-like protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600364|gb|EFF44465.1| thioredoxin-like protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605545|gb|EFF48863.1| thioredoxin-like protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 199 Score = 96.4 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSAS 165 G+ +++V+R++ V++N V P +A GG + + DG+V L G C GC A Sbjct: 99 KGEAPAESASMVERVRWVVENEVNPQLASHGGRVAVQEVSADGVVLLRFGGGCHGCGMAD 158 Query: 166 ETLKYGVANILNHFVPEVKDIRT 188 TLK G+ L VP V +R Sbjct: 159 VTLKQGIEKTLMGRVPGVTAVRD 181 >gi|330720100|gb|EGG98512.1| hypothetical protein imdm_2277 [gamma proteobacterium IMCC2047] Length = 195 Score = 96.4 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIV-FLSMRGACSGCPSASETLKYG 171 +S + +R+ VL V P +A GG++ D V L G C GC S TLK G Sbjct: 107 ENSTLEERVNYVLWTEVNPMLASHGGEVSLMEIADETVAVLKFGGGCQGCSSVDVTLKEG 166 Query: 172 VANILNHFVPEVKDIRT 188 V L +PE+ +IR Sbjct: 167 VEKTLREHIPELTEIRD 183 >gi|154687334|ref|YP_001422495.1| YutI [Bacillus amyloliquefaciens FZB42] gi|154353185|gb|ABS75264.1| YutI [Bacillus amyloliquefaciens FZB42] Length = 86 Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ + ++++EVLD ++RP + RDGGD +GIV L + GAC CPS++ TLK G+ Sbjct: 10 TEVEMKEQVQEVLD-KLRPFLLRDGGDCELVDVDEGIVKLRLLGACGSCPSSTITLKAGI 68 Query: 173 ANIL 176 L Sbjct: 69 ERAL 72 >gi|119946808|ref|YP_944488.1| putative DNA uptake protein [Psychromonas ingrahamii 37] gi|150383446|sp|A1SZH4|NFUA_PSYIN RecName: Full=Fe/S biogenesis protein nfuA gi|119865412|gb|ABM04889.1| HesB/YadR/YfhF-family protein [Psychromonas ingrahamii 37] Length = 193 Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 66/181 (36%), Gaps = 14/181 (7%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF E + R+F I PG A G + + L Sbjct: 3 EITPIAQAHFKKLLEPQKEGTHIRVFVINPGTAKAECGVSYCPPEAVESSDTRLTFDGFD 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI---------ESDSAVVQRIKEVLDNRVR 130 +++ P + + + ++ D + D+ +++R++ V+ ++ Sbjct: 63 ALIDEVS--VPFLEDAFVDLVEEDAGTQLTLKAPNAKMRKVKDDAPLLERVEYVIQVQIN 120 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANIL-NHFVPEVKDIRT 188 P +A GG I D + + G C+GC TLK GV L + F E+ +R Sbjct: 121 PQLASHGGFIKLIEITEDNVAIIEFGGGCNGCSQVDLTLKQGVEKELIDEFSGELNAVRD 180 Query: 189 V 189 + Sbjct: 181 I 181 >gi|319650406|ref|ZP_08004549.1| nitrogen-fixing NifU-like protein [Bacillus sp. 2_A_57_CT2] gi|317397967|gb|EFV78662.1| nitrogen-fixing NifU-like protein [Bacillus sp. 2_A_57_CT2] Length = 79 Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 1/66 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 + + + ++++EVLD ++RP + RDGGD DGIV L + GAC CPS++ TLK Sbjct: 1 MAEQTTMTEQVQEVLD-KLRPFLLRDGGDCELVDVEDGIVKLRLLGACGSCPSSTITLKA 59 Query: 171 GVANIL 176 G+ L Sbjct: 60 GIERAL 65 >gi|302770961|ref|XP_002968899.1| hypothetical protein SELMODRAFT_16556 [Selaginella moellendorffii] gi|300163404|gb|EFJ30015.1| hypothetical protein SELMODRAFT_16556 [Selaginella moellendorffii] Length = 170 Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 2/104 (1%) Query: 87 SGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR 146 S ++ + E+ + + +VLD VRP + DGG++ Sbjct: 1 SSREVVSPFESSNTSSTAGSGLYSTETYDFTAENVDKVLDE-VRPYLVADGGNVAVVSVA 59 Query: 147 DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE-VKDIRTV 189 DG V L ++GAC CPS++ T+K G+ +L + VK++ + Sbjct: 60 DGTVSLELQGACGTCPSSTSTMKMGIERVLREKFGDAVKEVVDI 103 >gi|194337374|ref|YP_002019168.1| nitrogen-fixing NifU domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194309851|gb|ACF44551.1| nitrogen-fixing NifU domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 86 Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 2/82 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASET 167 D++ + A+ R+ L+ VRP + DGGD G +D V + + GAC CP ++ T Sbjct: 6 DYLPNSDALYDRVIAALET-VRPYLQVDGGDCQIVGITKDMTVDVKLLGACGSCPMSTLT 64 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 L+ GV + VPE+ + +V Sbjct: 65 LRAGVEQAIKKAVPEIVRVESV 86 >gi|223041980|ref|ZP_03612164.1| putative DNA uptake protein [Actinobacillus minor 202] gi|223017237|gb|EEF15665.1| putative DNA uptake protein [Actinobacillus minor 202] Length = 199 Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 61/181 (33%), Gaps = 16/181 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF E + RIF + PG + G + + G Sbjct: 11 ISETAQTHFRRLLEQQEEGTNIRIFVVNPGTPNAECGVSYCPPN--AVEDTDTEFQYNGF 68 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 P + + D D MG+ + D+ ++R+ V+ ++ Sbjct: 69 SAFVDEISLPFLDEAEI-DYVTDPMGAQLTLKAPNAKMRKVADDAPFIERLDYVIQTQIN 127 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIRT 188 P +A GG + D L G C+GC TLK G+ +L F E+ ++ Sbjct: 128 PQLASHGGKVTLIEVTEDKFAILQFGGGCNGCSMVDVTLKEGIEKQLLLQFPDELAGVKD 187 Query: 189 V 189 V Sbjct: 188 V 188 >gi|149374734|ref|ZP_01892507.1| Thioredoxin-like protein [Marinobacter algicola DG893] gi|149360623|gb|EDM49074.1| Thioredoxin-like protein [Marinobacter algicola DG893] Length = 195 Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKY 170 + ++ + RI+ +L + + P +A GG++ + I L G C GC + S TLK Sbjct: 105 DENAPLPDRIQYILASEINPNLAAHGGEVSLVEVAEESIAVLRFGGGCQGCSAVSLTLKQ 164 Query: 171 GVANILNHFVPEVKDIRTV 189 GV + L VPE+ +R V Sbjct: 165 GVESTLKERVPEITAVRDV 183 >gi|295697085|ref|YP_003590323.1| nitrogen-fixing NifU domain protein [Bacillus tusciae DSM 2912] gi|295412687|gb|ADG07179.1| nitrogen-fixing NifU domain protein [Bacillus tusciae DSM 2912] Length = 277 Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + R+ VL+ VRP + GGD+ +V++ + GACSGC ++ TL+ GV Sbjct: 84 QDLFTRVAAVLEE-VRPYMRSHGGDVELVKVEADVVYVRLHGACSGCSLSALTLRDGVEE 142 Query: 175 ILNHFVPEVKDIR 187 + VPEV+ + Sbjct: 143 AVKARVPEVRRVE 155 >gi|255536379|ref|YP_003096750.1| Nitrogen-fixing NifU, C-terminal [Flavobacteriaceae bacterium 3519-10] gi|255342575|gb|ACU08688.1| Nitrogen-fixing NifU, C-terminal [Flavobacteriaceae bacterium 3519-10] Length = 77 Score = 95.6 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 V ++ L+ ++RP + +DGGDI R+ IV++ ++G C+GCP + T+K GV N Sbjct: 3 EQTVSKVMYALE-KIRPFLNKDGGDIELVDVRESIVYVKLQGNCNGCPMSFSTMKLGVEN 61 Query: 175 ILNHFVPEVKDIRTV 189 + PE++++ V Sbjct: 62 TIKQHAPEIQEVINV 76 >gi|110596893|ref|ZP_01385183.1| Nitrogen-fixing NifU-like [Chlorobium ferrooxidans DSM 13031] gi|110341580|gb|EAT60040.1| Nitrogen-fixing NifU-like [Chlorobium ferrooxidans DSM 13031] Length = 86 Score = 95.6 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 106 GSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSA 164 S D++ + A+ R+ L+ VRP + DGGD G +D +V + + GAC CP + Sbjct: 3 TSKDYLPNSDAIYDRVIAALET-VRPYLQVDGGDCQLVGISKDMVVDVKLLGACGSCPMS 61 Query: 165 SETLKYGVANILNHFVPEVKDIRTV 189 + TL+ GV + PE+ + +V Sbjct: 62 TLTLRAGVEQAIKKANPEIVRVESV 86 >gi|262402006|ref|ZP_06078571.1| protein gntY [Vibrio sp. RC586] gi|262351978|gb|EEZ01109.1| protein gntY [Vibrio sp. RC586] Length = 166 Score = 95.6 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 58/156 (37%), Gaps = 16/156 (10%) Query: 46 FSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDD 104 F + PG + G + + + P G P + + D D Sbjct: 2 FVVNPGTQNAECGVSYCPP--EAVEATDTEYPFSGFSAYVDELSLPFLEEAVI-DFVTDK 58 Query: 105 MGSG----------DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLS 153 MGS + D+ +++R++ L +V P +A GG + DG+ + Sbjct: 59 MGSQLTLKAPNAKMRKVADDAPLMERVEYALQTQVNPQLAGHGGHVSLISISDDGVALVQ 118 Query: 154 MRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIRT 188 G C+GC TLK G+ +L F E+ +R Sbjct: 119 FGGGCNGCSMVDVTLKEGIEKELLAQFAGELTAVRD 154 >gi|302848639|ref|XP_002955851.1| hypothetical protein VOLCADRAFT_96828 [Volvox carteri f. nagariensis] gi|300258819|gb|EFJ43052.1| hypothetical protein VOLCADRAFT_96828 [Volvox carteri f. nagariensis] Length = 540 Score = 95.6 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 7/98 (7%) Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI 140 I+ F SG + GS + V+ ++ L+ VRP + DGGD+ Sbjct: 366 IVSPFESGGAAAATEQRQRQSVGSSGSV------ALTVEAVQAALEE-VRPYLMADGGDV 418 Query: 141 VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +DGIV+L ++GACS CPS S T+K G+ ++ Sbjct: 419 EVVEVKDGIVYLRLQGACSSCPSQSATMKGGIERVIRQ 456 >gi|255548369|ref|XP_002515241.1| Nitrogen fixation protein nifU, putative [Ricinus communis] gi|223545721|gb|EEF47225.1| Nitrogen fixation protein nifU, putative [Ricinus communis] Length = 210 Score = 95.6 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 1/97 (1%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLS 153 + G + + +++ VRP + DGG++ DG++ L Sbjct: 41 TAIKATSQTGSQSPGLYSAQKFELTPENVDLVLEDVRPYLIADGGNVDVVSVEDGVISLQ 100 Query: 154 MRGACSGCPSASETLKYGVANILNHFVPE-VKDIRTV 189 ++GAC CPS++ T+K G+ +L + VKDIR V Sbjct: 101 LQGACGSCPSSTTTMKMGIERVLKEKFGDSVKDIRQV 137 Score = 41.3 bits (96), Expect = 0.060, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 12/85 (14%) Query: 105 MGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSA 164 + + E+ V R ++L RPA+ GG + G + G P + Sbjct: 137 VNDEEVKETTPEAVNRHLDIL----RPAIKNYGGSVEVVSIESGECLVKYSG-----PES 187 Query: 165 SETLKYGVANILNHFVPEVKDIRTV 189 G+ + PE+ ++ V Sbjct: 188 IG---SGIKAAIKEKFPEITNVVLV 209 >gi|240948503|ref|ZP_04752876.1| putative DNA uptake protein [Actinobacillus minor NM305] gi|240297011|gb|EER47582.1| putative DNA uptake protein [Actinobacillus minor NM305] Length = 199 Score = 95.6 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 61/181 (33%), Gaps = 16/181 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF E + RIF + PG + G + + G Sbjct: 11 ISETAQTHFCRLLEQQEEGTNIRIFVVNPGTPNAECGVSYCPPN--AVEDTDTEFQYNGF 68 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 P + + D D MG+ + D+ ++R+ V+ ++ Sbjct: 69 SAFVDEISLPFLDEAEI-DYVTDPMGAQLTLKAPNAKMRKVADDAPFIERLDYVIQTQIN 127 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIRT 188 P +A GG + D L G C+GC TLK G+ +L F E+ ++ Sbjct: 128 PQLASHGGKVTLIEVTEDKFAILQFGGGCNGCSMVDVTLKEGIEKQLLLQFPDELAGVKD 187 Query: 189 V 189 V Sbjct: 188 V 188 >gi|172035474|ref|YP_001801975.1| iron-sulfur cluster assembly protein [Cyanothece sp. ATCC 51142] gi|171696928|gb|ACB49909.1| iron-sulfur cluster assembly protein [Cyanothece sp. ATCC 51142] Length = 293 Score = 95.6 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 6/115 (5%) Query: 76 PVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVAR 135 + MI + + ++ S ++ + I++VL+ +RP +A+ Sbjct: 184 DIDDMIADILQEKATAVAVA----TEVVKAKSETKPLTNLQKITLIQQVLEEEIRPFLAK 239 Query: 136 DGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV-PEVKDIRTV 189 DGGD+ +V ++++GAC C S++ TLK G+ L V PE+ + V Sbjct: 240 DGGDLELIDIEGDLVKVTLQGACGSCASSTATLKGGIEARLKERVSPELT-VIAV 293 >gi|218961333|ref|YP_001741108.1| NifU-like domain protein [Candidatus Cloacamonas acidaminovorans] gi|167729990|emb|CAO80902.1| NifU-like domain protein [Candidatus Cloacamonas acidaminovorans] Length = 75 Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++I+ +L +VRP++ DGGD+ D ++ + ++G C+GCP A+ TLK G+ ++ Sbjct: 5 EKIESIL-AKVRPSIQADGGDVELINIREDNVIEVRLKGTCNGCPMATLTLKAGIERLIK 63 Query: 178 HFVPEVKDIRTV 189 +PEVK++ V Sbjct: 64 EEIPEVKEVIAV 75 >gi|58582689|ref|YP_201705.1| hypothetical protein XOO3066 [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427283|gb|AAW76320.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 211 Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSAS 165 G+ +++V+R++ V++N + P +A GG + + DG+V L G C GC A Sbjct: 111 KGEAPAESASMVERVRWVVENEINPQLASHGGRVAVQEVSADGVVLLRFGGGCHGCGMAD 170 Query: 166 ETLKYGVANILNHFVPEVKDIRT 188 TLK G+ L VP V +R Sbjct: 171 VTLKQGIEKTLMGRVPGVIAVRD 193 >gi|57864812|gb|AAW56987.1| nitrogen fixation protein U [Cyanothece sp. ATCC 51142] Length = 285 Score = 95.2 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 6/115 (5%) Query: 76 PVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVAR 135 + MI + + ++ S ++ + I++VL+ +RP +A+ Sbjct: 176 DIDDMIADILQEKATAVAVA----TEVVKAKSETKPLTNLQKITLIQQVLEEEIRPFLAK 231 Query: 136 DGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV-PEVKDIRTV 189 DGGD+ +V ++++GAC C S++ TLK G+ L V PE+ + V Sbjct: 232 DGGDLELIDIEGDLVKVTLQGACGSCASSTATLKGGIEARLKERVSPELT-VIAV 285 >gi|251798821|ref|YP_003013552.1| nitrogen-fixing NifU domain protein [Paenibacillus sp. JDR-2] gi|247546447|gb|ACT03466.1| nitrogen-fixing NifU domain protein [Paenibacillus sp. JDR-2] Length = 80 Score = 95.2 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + + +VLD ++RP + RDGGD+ DGIV L + GAC CPS++ TLK G+ Sbjct: 6 DTMYDEVLDVLD-KLRPFLQRDGGDVELVDVEDGIVKLRLMGACGSCPSSTITLKAGIER 64 Query: 175 IL 176 L Sbjct: 65 AL 66 >gi|225437626|ref|XP_002278510.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297744011|emb|CBI36981.3| unnamed protein product [Vitis vinifera] Length = 213 Score = 95.2 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 + + +++ VRP + DGG++ DG++ L ++GAC CPS++ T+ G+ + Sbjct: 66 ELTAKNVDLVLEDVRPYLISDGGNVDVVSVEDGVISLKLQGACGSCPSSTTTMTMGIERV 125 Query: 176 LNHFVPE-VKDIRTV 189 L + VKDIR V Sbjct: 126 LKEKFGDAVKDIRQV 140 >gi|21242852|ref|NP_642434.1| hypothetical protein XAC2117 [Xanthomonas axonopodis pv. citri str. 306] gi|51702177|sp|Q8PKQ2|NFUA_XANAC RecName: Full=Fe/S biogenesis protein nfuA gi|21108342|gb|AAM36970.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 199 Score = 95.2 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSAS 165 G+ +++V+R++ V++N + P +A GG + + +G+V L G C GC A Sbjct: 99 KGEAPAESASMVERVRWVVENEINPQLASHGGRVAVQEVSAEGVVLLRFGGGCHGCGMAD 158 Query: 166 ETLKYGVANILNHFVPEVKDIRT 188 TLK G+ L VP V +R Sbjct: 159 VTLKQGIEKTLMGRVPGVTAVRD 181 >gi|157693637|ref|YP_001488099.1| iron-sulfur assembly protein [Bacillus pumilus SAFR-032] gi|194015287|ref|ZP_03053903.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|157682395|gb|ABV63539.1| possible iron-sulfur assembly protein [Bacillus pumilus SAFR-032] gi|194012691|gb|EDW22257.1| conserved domain protein [Bacillus pumilus ATCC 7061] Length = 78 Score = 95.2 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ + +++EVLD ++RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 2 TEVEMKDQVQEVLD-KLRPFLLRDGGDCELVDIEDGIVKLRLLGACGSCPSSTITLKAGI 60 Query: 173 ANIL 176 L Sbjct: 61 ERAL 64 >gi|326494232|dbj|BAJ90385.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 224 Score = 95.2 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + + VLD+ VRP + DGGD+ DG+V L + GACS CPS++ T+ G+ Sbjct: 73 TYELTPDNVDRVLDD-VRPYLISDGGDVAVVSVEDGVVSLRLEGACSSCPSSTTTMNMGI 131 Query: 173 ANILNHFVPE-VKDIRTV 189 +L + +KDIR V Sbjct: 132 ERVLKEKFGDAIKDIRQV 149 >gi|255632161|gb|ACU16433.1| unknown [Glycine max] Length = 221 Score = 95.2 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Query: 73 LRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPA 132 L+P VL + I + + G + + +++ + VRP Sbjct: 29 LKPSVLNFRPQKQNRSIRIRSPSASNPNQNESSSPGLYSAKKFDLTASNVDLVLDDVRPY 88 Query: 133 VARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE-VKDIRTV 189 + DGG++ DG+V L + GAC CPS++ T+ G+ +L + VKDIR V Sbjct: 89 LIADGGNVDVVSVEDGVVSLRLEGACESCPSSTTTMTMGIERVLKEKFGDAVKDIRQV 146 Score = 39.0 bits (90), Expect = 0.30, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 9/75 (12%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E V+ + L+ +RPA+ GG + G + G P + G Sbjct: 150 EPRETTVEAVNNHLEI-LRPAIKNYGGSVEVVSVEGGECEVKYVG-----PDSIG---SG 200 Query: 172 VANILNHFVPEVKDI 186 + + P++ ++ Sbjct: 201 IKATIKEKFPDILNV 215 >gi|289665916|ref|ZP_06487497.1| hypothetical protein XcampvN_23290 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 199 Score = 95.2 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSAS 165 G+ +++V+R++ V++N + P +A GG + + DG+V L G C GC A Sbjct: 99 KGEAPAESASMVERVRWVVENEINPQLASHGGRVAVQEVSADGVVLLRFGGGCHGCGMAD 158 Query: 166 ETLKYGVANILNHFVPEVKDIRT 188 TLK G+ L VP V +R Sbjct: 159 VTLKQGIEKTLMGRVPGVIAVRD 181 >gi|188577468|ref|YP_001914397.1| protein GntY [Xanthomonas oryzae pv. oryzae PXO99A] gi|254767336|sp|B2STN5|NFUA_XANOP RecName: Full=Fe/S biogenesis protein nfuA gi|188521920|gb|ACD59865.1| protein GntY [Xanthomonas oryzae pv. oryzae PXO99A] Length = 199 Score = 95.2 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSAS 165 G+ +++V+R++ V++N + P +A GG + + DG+V L G C GC A Sbjct: 99 KGEAPAESASMVERVRWVVENEINPQLASHGGRVAVQEVSADGVVLLRFGGGCHGCGMAD 158 Query: 166 ETLKYGVANILNHFVPEVKDIRT 188 TLK G+ L VP V +R Sbjct: 159 VTLKQGIEKTLMGRVPGVIAVRD 181 >gi|172058330|ref|YP_001814790.1| NifU domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171990851|gb|ACB61773.1| nitrogen-fixing NifU domain protein [Exiguobacterium sibiricum 255-15] Length = 75 Score = 95.2 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 + ++ EVL+ ++RP + RDGGD+ DGIV L + GAC CPS++ TLK G+ Sbjct: 2 EMFDQVNEVLE-KLRPFLLRDGGDVELVDVEDGIVKLRLMGACGSCPSSTITLKAGIERA 60 Query: 176 L 176 L Sbjct: 61 L 61 >gi|167041235|gb|ABZ05992.1| putative HesB-like domain protein [uncultured marine microorganism HF4000_001N02] Length = 189 Score = 95.2 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 5/160 (3%) Query: 33 AKEAEISPLASRIFSIPGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPII 92 A++A+ LA RI I G F YD V + L + G+ + + Sbjct: 19 AEQADDDELALRI-EIIGRGPKGFQYDLQFVTGGDGAEDDLVLKIDGITVRVAARSVQYL 77 Query: 93 HNGGLGDMKLDDMGSGDFIESD----SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG 148 L + G F + + Q++ +++ + PAVA GG + G + Sbjct: 78 EGTTLDFRETLMGGGFAFDNPNPMWVDELSQKVADIITQEINPAVASHGGVVELVGVDED 137 Query: 149 IVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 ++ G C GC A TLK GV ++ VPE+ ++ Sbjct: 138 KAIIAFGGGCQGCGMADVTLKQGVEVMIKDKVPEIIEVID 177 >gi|319787304|ref|YP_004146779.1| HesB/YadR/YfhF-family protein [Pseudoxanthomonas suwonensis 11-1] gi|317465816|gb|ADV27548.1| HesB/YadR/YfhF-family protein [Pseudoxanthomonas suwonensis 11-1] Length = 198 Score = 94.9 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 1/99 (1%) Query: 91 IIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGI 149 + G G+ +++V+R++ V++N + P +A GG + DG Sbjct: 82 VFQGTGAQLTIRAPRIKGEAPGEAASIVERVRWVMENEINPQLASHGGRATVEEVSADGT 141 Query: 150 VFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 V+L G C GC A TLK G+ L VP V +R Sbjct: 142 VWLRFGGGCHGCGMADVTLKQGIEKTLIARVPGVTAVRD 180 >gi|253575294|ref|ZP_04852632.1| nitrogen-fixing NifU domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251845291|gb|EES73301.1| nitrogen-fixing NifU domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 81 Score = 94.9 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + + EVLD ++RP + RDGGD+ DGIV L + GAC CPS++ TLK G+ Sbjct: 7 DKLYDEVLEVLD-KLRPFLQRDGGDVELVDVEDGIVKLKLMGACGSCPSSTITLKAGIER 65 Query: 175 IL 176 L Sbjct: 66 AL 67 >gi|325918641|ref|ZP_08180745.1| thioredoxin-like protein [Xanthomonas vesicatoria ATCC 35937] gi|325535148|gb|EGD07040.1| thioredoxin-like protein [Xanthomonas vesicatoria ATCC 35937] Length = 199 Score = 94.9 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSAS 165 G+ +++V+R++ V++N + P +A GG + + DG+V L G C GC A Sbjct: 99 KGEAPADSASMVERVRWVVENEINPQLASHGGRVAVQEVSADGVVLLRFGGGCHGCGMAD 158 Query: 166 ETLKYGVANILNHFVPEVKDIRT 188 TLK G+ L VP V +R Sbjct: 159 VTLKQGIEKTLMGRVPGVIAVRD 181 >gi|325921235|ref|ZP_08183096.1| thioredoxin-like protein [Xanthomonas gardneri ATCC 19865] gi|325548298|gb|EGD19291.1| thioredoxin-like protein [Xanthomonas gardneri ATCC 19865] Length = 199 Score = 94.9 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSAS 165 G+ +++V+R++ V++N + P +A GG + + DG+V L G C GC A Sbjct: 99 KGEAPADSASMVERVRWVVENEINPQLASHGGRVAVQEVSADGVVLLRFGGGCHGCGMAD 158 Query: 166 ETLKYGVANILNHFVPEVKDIRT 188 TLK G+ L VP V +R Sbjct: 159 VTLKQGIEKTLMGRVPGVIAVRD 181 >gi|289548959|ref|YP_003473947.1| nitrogen-fixing NifU domain protein [Thermocrinis albus DSM 14484] gi|289182576|gb|ADC89820.1| nitrogen-fixing NifU domain protein [Thermocrinis albus DSM 14484] Length = 85 Score = 94.9 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 2/75 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN 174 + I+ VLD +RPA+ DGGD+ DG V + M GAC+GC + TLK G+ Sbjct: 2 PTREEIEAVLDE-IRPALRFDGGDVELVDVLEDGTVLVRMIGACAGCGMSVLTLKAGIER 60 Query: 175 ILNHFVPEVKDIRTV 189 L P++K+++ V Sbjct: 61 ALKSRFPDIKEVKDV 75 >gi|260770783|ref|ZP_05879712.1| protein gntY [Vibrio furnissii CIP 102972] gi|260614020|gb|EEX39210.1| protein gntY [Vibrio furnissii CIP 102972] gi|315178824|gb|ADT85738.1| predicted gluconate transport-associated protein [Vibrio furnissii NCTC 11218] Length = 166 Score = 94.9 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 16/156 (10%) Query: 46 FSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDD 104 F + PG + G + + + ++ P + + D D Sbjct: 2 FVVNPGTQNAECGVSYCPPEAVEATDTEITYSDFSAYVDELS--LPFLEEAVI-DFVTDK 58 Query: 105 MGSG----------DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLS 153 MGS + D+ +++R++ + +V P +A GG + DG+ + Sbjct: 59 MGSQLTLKAPNAKMRKVADDAPLMERVEYAIQTQVNPQLAGHGGHVQLLEISDDGVALVQ 118 Query: 154 MRGACSGCPSASETLKYGVAN-ILNHFVPEVKDIRT 188 G C+GC TLK G+ +L F E+ +R Sbjct: 119 FGGGCNGCSMVDVTLKEGIEKELLAQFEGELTAVRD 154 >gi|84624576|ref|YP_451948.1| hypothetical protein XOO_2919 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166712246|ref|ZP_02243453.1| hypothetical protein Xoryp_12525 [Xanthomonas oryzae pv. oryzicola BLS256] gi|123521499|sp|Q2P1A3|NFUA_XANOM RecName: Full=Fe/S biogenesis protein nfuA gi|84368516|dbj|BAE69674.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 199 Score = 94.9 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSAS 165 G+ +++V+R++ V++N + P +A GG + + DG+V L G C GC A Sbjct: 99 KGEAPAESASMVERVRWVVENEINPQLASHGGRVAVQEVSADGVVLLRFGGGCHGCGMAD 158 Query: 166 ETLKYGVANILNHFVPEVKDIRT 188 TLK G+ L VP V +R Sbjct: 159 VTLKQGIEKTLMGRVPGVIAVRD 181 >gi|254524604|ref|ZP_05136659.1| protein GntY [Stenotrophomonas sp. SKA14] gi|219722195|gb|EED40720.1| protein GntY [Stenotrophomonas sp. SKA14] Length = 199 Score = 94.9 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSAS 165 G+ +++V+R+ V++N + P +A GG + + DG+V L G C GC A Sbjct: 99 KGEAPGDAASLVERVHWVVENEINPQLASHGGKVAVQEVSADGVVLLRFGGGCQGCGMAD 158 Query: 166 ETLKYGVANILNHFVPEVKDIRT 188 TLK G+ L VP V +R Sbjct: 159 VTLKQGIEKTLMGRVPGVTAVRD 181 >gi|332296888|ref|YP_004438810.1| nitrogen-fixing NifU domain-containing protein [Treponema brennaborense DSM 12168] gi|332179991|gb|AEE15679.1| nitrogen-fixing NifU domain-containing protein [Treponema brennaborense DSM 12168] Length = 76 Score = 94.9 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANI 175 + ++K+ LD ++RP + DGGD+ F G VF+ + GAC CP A+ TLK GV Sbjct: 3 LEDKVKDALD-KIRPQLQADGGDLEFVSMEAGGKVFVKLTGACGNCPMATMTLKQGVERF 61 Query: 176 LNHFVPEVKDIRT 188 L +PEV ++ Sbjct: 62 LKDTIPEVTEVLQ 74 >gi|269216053|ref|ZP_06159907.1| NifU family protein [Slackia exigua ATCC 700122] gi|269130312|gb|EEZ61390.1| NifU family protein [Slackia exigua ATCC 700122] Length = 76 Score = 94.9 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +R+ VLD VRP++ DGGD+ DGIV + ++GAC+GC +S T+ GV IL Sbjct: 6 KRVSRVLD-MVRPSLQADGGDLELVDITDDGIVRVRLQGACNGCALSSLTIANGVERILK 64 Query: 178 HFVPEVKDIRTV 189 VPEV + ++ Sbjct: 65 EHVPEVAKVISI 76 >gi|307244961|ref|ZP_07527058.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253914|ref|ZP_07535766.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258368|ref|ZP_07540109.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854126|gb|EFM86334.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863118|gb|EFM95060.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867552|gb|EFM99399.1| Fe/S bioproteinsis protein nfuA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 199 Score = 94.9 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 60/181 (33%), Gaps = 16/181 (8%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF E + RIF + PG + G + + + G Sbjct: 11 ISGAAQTHFRRLLEQQEENTNIRIFVVNPGTPNAECGVSYCPPN--AVEETDTQFEYNGF 68 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRVR 130 P + + D D MGS + D+ ++R+ V+ +V Sbjct: 69 SAFVDEISLPFLDEAEI-DYVTDPMGSQLTLKAPNAKMRKVADDAPFIERLDYVIQTQVN 127 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFV-PEVKDIRT 188 P +A GG + D L G C+GC TLK G+ L E+ ++ Sbjct: 128 PQLASHGGRVTLIEVTEDKYAILQFGGGCNGCSMVDVTLKEGIEKQLLAMFHDELAGVKD 187 Query: 189 V 189 V Sbjct: 188 V 188 >gi|332703499|ref|ZP_08423587.1| nitrogen-fixing NifU domain-containing protein [Desulfovibrio africanus str. Walvis Bay] gi|332553648|gb|EGJ50692.1| nitrogen-fixing NifU domain-containing protein [Desulfovibrio africanus str. Walvis Bay] Length = 80 Score = 94.9 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGV 172 D+ + +R+ LD +RP + DGGD+ D G+V + +RGAC C + TLK G+ Sbjct: 5 DTTMRERVLAALD-MIRPVLRADGGDVELVEVTDTGVVKVRLRGACQCCTMSRMTLKNGI 63 Query: 173 ANILNHFVPEVKDIRTV 189 + +P + + +V Sbjct: 64 ERTILKEIPGLTSVESV 80 >gi|71278620|ref|YP_266987.1| putative DNA uptake protein [Colwellia psychrerythraea 34H] gi|119370607|sp|Q48AC6|NFUA_COLP3 RecName: Full=Fe/S biogenesis protein nfuA gi|71144360|gb|AAZ24833.1| HesB-like domain/NifU-like domain protein [Colwellia psychrerythraea 34H] Length = 192 Score = 94.9 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 59/181 (32%), Gaps = 16/181 (8%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF + R+F + PG A G + + D L Sbjct: 3 TISENAQQHFIKLLSQQAEGTHIRVFVVNPGTAKAECGVSYCPPDAVEADDIQLPFEGFS 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 +++ G D D MGS + D+ + +R+ L V Sbjct: 63 AMVDADSKG---FLEDAEIDFTTDQMGSQLTLKAPNAKLRKVADDAPLFERVHYFLQAEV 119 Query: 130 RPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNH-FVPEVKDIR 187 P +A GG+ DG L G C+GC T+K G+ L E+K ++ Sbjct: 120 NPQLAGHGGECTLVEITDDGYAVLQFGGGCNGCAQIDVTVKDGIEKQLIELMAGEIKGVK 179 Query: 188 T 188 Sbjct: 180 D 180 >gi|309810977|ref|ZP_07704775.1| NifU-like protein [Dermacoccus sp. Ellin185] gi|308434941|gb|EFP58775.1| NifU-like protein [Dermacoccus sp. Ellin185] Length = 219 Score = 94.5 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 77/200 (38%), Gaps = 22/200 (11%) Query: 1 MFIQTEDTPNPATLK--FIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGY 58 + + E TP+P ++ F + + GA+ + EA + S PG V Sbjct: 4 LALHPEATPDPDVVRWRFSGARCDVPLGAL--AAWPEALTRAGVGDVVSEPGALVVMLSA 61 Query: 59 DFITVGKDQYDWEHLRPPVLGMIMEH-------FISGDPIIHNGGLGDMKLDDMGSGDFI 111 + W V + + F++ +P D G+ Sbjct: 62 --------PHTWASDGAAVRDALSDVLADASSRFVAREPGGVEPSDASSNADGDAVGELD 113 Query: 112 E---SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 E D+ + ++ + V+ + GGDI G G+V +S+ GAC GCP+A+ TL Sbjct: 114 EGAADDTEIAEQARVVVADVAEQVAHSHGGDITLLGVERGVVTVSLTGACDGCPAAAMTL 173 Query: 169 KYGVANILNHFVPEVKDIRT 188 + + L V V+++R Sbjct: 174 HRRIEDELRARVGGVREVRA 193 >gi|307545194|ref|YP_003897673.1| thioredoxin [Halomonas elongata DSM 2581] gi|307217218|emb|CBV42488.1| K07400 thioredoxin-like protein [Halomonas elongata DSM 2581] Length = 250 Score = 94.5 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLKYG 171 +DS + R+ VL + + P +A GG+I + + L+ G C GC + TLK G Sbjct: 161 ADSPLEDRVNYVLYSEINPGLAAHGGEIKLVQLTEEQVAVLAFGGGCQGCAAVDLTLKEG 220 Query: 172 VANILNHFVPEVKDIRTV 189 V L +PE+ IR V Sbjct: 221 VERTLMERIPELSGIRDV 238 >gi|308174916|ref|YP_003921621.1| iron-sulfur scaffold protein [Bacillus amyloliquefaciens DSM 7] gi|307607780|emb|CBI44151.1| putative iron-sulfur scaffold protein [Bacillus amyloliquefaciens DSM 7] gi|328554923|gb|AEB25415.1| iron-sulfur scaffold protein [Bacillus amyloliquefaciens TA208] gi|328913234|gb|AEB64830.1| Putative nitrogen fixation protein yutI [Bacillus amyloliquefaciens LL3] Length = 78 Score = 94.5 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ + ++++EVLD ++RP + RDGGD +GIV L + GAC CPS++ TLK G+ Sbjct: 2 TEVEMKEQVQEVLD-KLRPFLLRDGGDCELVDIDEGIVKLRLLGACGSCPSSTITLKAGI 60 Query: 173 ANIL 176 L Sbjct: 61 ERAL 64 >gi|126698430|ref|YP_001087327.1| hypothetical protein CD0850 [Clostridium difficile 630] gi|254974469|ref|ZP_05270941.1| hypothetical protein CdifQC_04113 [Clostridium difficile QCD-66c26] gi|255091862|ref|ZP_05321340.1| hypothetical protein CdifC_04255 [Clostridium difficile CIP 107932] gi|255099963|ref|ZP_05328940.1| hypothetical protein CdifQCD-6_04105 [Clostridium difficile QCD-63q42] gi|255305852|ref|ZP_05350024.1| hypothetical protein CdifA_04615 [Clostridium difficile ATCC 43255] gi|255313596|ref|ZP_05355179.1| hypothetical protein CdifQCD-7_04573 [Clostridium difficile QCD-76w55] gi|255516280|ref|ZP_05383956.1| hypothetical protein CdifQCD-_04157 [Clostridium difficile QCD-97b34] gi|255649377|ref|ZP_05396279.1| hypothetical protein CdifQCD_04212 [Clostridium difficile QCD-37x79] gi|255654901|ref|ZP_05400310.1| hypothetical protein CdifQCD-2_04194 [Clostridium difficile QCD-23m63] gi|260682549|ref|YP_003213834.1| hypothetical protein CD196_0799 [Clostridium difficile CD196] gi|260686148|ref|YP_003217281.1| hypothetical protein CDR20291_0780 [Clostridium difficile R20291] gi|306519465|ref|ZP_07405812.1| hypothetical protein CdifQ_04665 [Clostridium difficile QCD-32g58] gi|115249867|emb|CAJ67684.1| putative NifU-like protein [Clostridium difficile] gi|260208712|emb|CBA61527.1| conserved hypothetical protein [Clostridium difficile CD196] gi|260212164|emb|CBE02822.1| conserved hypothetical protein [Clostridium difficile R20291] Length = 74 Score = 94.5 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 48/74 (64%), Gaps = 1/74 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + +++++VL+ +++P + RDGGD+ +G+V + ++GACSGCP A+ T+K + N+ Sbjct: 1 MREKVEKVLEEKIKPVLQRDGGDVELIDVNENGVVLVRLQGACSGCPGATMTIKAIIENV 60 Query: 176 LNHFVPEVKDIRTV 189 L VP V + V Sbjct: 61 LVSEVPGVTQVLGV 74 >gi|89100547|ref|ZP_01173407.1| nitrogen fixation protein (NifU protein) [Bacillus sp. NRRL B-14911] gi|89084734|gb|EAR63875.1| nitrogen fixation protein (NifU protein) [Bacillus sp. NRRL B-14911] Length = 77 Score = 94.5 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 + ++ ++EVLD ++RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 2 EQDIISDVQEVLD-KLRPFLLRDGGDCELVDVEDGIVKLRLLGACGSCPSSTITLKAGIE 60 Query: 174 NIL 176 L Sbjct: 61 RAL 63 >gi|221311164|ref|ZP_03593011.1| hypothetical protein Bsubs1_17486 [Bacillus subtilis subsp. subtilis str. 168] gi|221315491|ref|ZP_03597296.1| hypothetical protein BsubsN3_17402 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320406|ref|ZP_03601700.1| hypothetical protein BsubsJ_17365 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324690|ref|ZP_03605984.1| hypothetical protein BsubsS_17516 [Bacillus subtilis subsp. subtilis str. SMY] gi|296331794|ref|ZP_06874261.1| putative iron-sulfur scaffold protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675816|ref|YP_003867488.1| putative iron-sulfur scaffold protein [Bacillus subtilis subsp. spizizenii str. W23] gi|311069717|ref|YP_003974640.1| putative iron-sulfur scaffold protein [Bacillus atrophaeus 1942] gi|321312766|ref|YP_004205053.1| putative iron-sulfur scaffold protein [Bacillus subtilis BSn5] gi|291485686|dbj|BAI86761.1| hypothetical protein BSNT_04769 [Bacillus subtilis subsp. natto BEST195] gi|296151119|gb|EFG92001.1| putative iron-sulfur scaffold protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414060|gb|ADM39179.1| putative iron-sulfur scaffold protein [Bacillus subtilis subsp. spizizenii str. W23] gi|310870234|gb|ADP33709.1| putative iron-sulfur scaffold protein [Bacillus atrophaeus 1942] gi|320019040|gb|ADV94026.1| putative iron-sulfur scaffold protein [Bacillus subtilis BSn5] Length = 78 Score = 94.5 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ + ++++EVLD ++RP + RDGGD +GIV L + GAC CPS++ TLK G+ Sbjct: 2 TEVEMKEQVQEVLD-KLRPFLLRDGGDCELVDVDEGIVKLRLLGACGSCPSSTITLKAGI 60 Query: 173 ANIL 176 L Sbjct: 61 ERAL 64 >gi|313683413|ref|YP_004061151.1| nitrogen-fixing nifu domain protein [Sulfuricurvum kujiense DSM 16994] gi|313156273|gb|ADR34951.1| nitrogen-fixing NifU domain protein [Sulfuricurvum kujiense DSM 16994] Length = 91 Score = 94.5 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 3/82 (3%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD ++Q ++ V+D ++RP +A DGGDI F G ++G +++ ++GAC GC S+ TL Sbjct: 1 MIPFSDEELMQPVRNVID-KIRPTLALDGGDIAFLGVKNGTIYVQLQGACIGCSSSGNTL 59 Query: 169 KYGVANILNHFV-PEVKDIRTV 189 KYGV L + PE+ + V Sbjct: 60 KYGVERQLRMDIHPELT-VINV 80 >gi|315187331|gb|EFU21087.1| nitrogen-fixing NifU domain protein [Spirochaeta thermophila DSM 6578] Length = 74 Score = 94.5 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +++V+ N +RPA+ DGGDI G+V + + GAC GCP + TLK GV L Sbjct: 6 VEKVI-NEIRPALKADGGDIQLLEVTEQGVVKVRLTGACHGCPMSQITLKQGVEAYLKRK 64 Query: 180 VPEVKDIRTV 189 +PE+ + V Sbjct: 65 LPEISSVEAV 74 >gi|218246615|ref|YP_002371986.1| Fe-S cluster assembly protein NifU [Cyanothece sp. PCC 8801] gi|218167093|gb|ACK65830.1| Fe-S cluster assembly protein NifU [Cyanothece sp. PCC 8801] Length = 294 Score = 94.5 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 2/70 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I+++LD ++PA+A+DGGD+ +V + ++GAC C S+++TLK G+ L V Sbjct: 226 IQQILDEEIKPALAKDGGDVELFDVEGDLVKVILQGACGSCASSTQTLKMGIEARLRERV 285 Query: 181 -PEVKDIRTV 189 PE+ + +V Sbjct: 286 SPELT-VISV 294 >gi|255994758|ref|ZP_05427893.1| NifU family protein [Eubacterium saphenum ATCC 49989] gi|255993471|gb|EEU03560.1| NifU family protein [Eubacterium saphenum ATCC 49989] Length = 74 Score = 94.1 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + + IK L+ +VRPA+ DGGD+ F + D +V + ++G C GCP + T+K + Sbjct: 1 MKEEIKAALE-KVRPALQMDGGDVEFVDFTDDKVVKVKLQGHCCGCPMSQMTVKGFIEKA 59 Query: 176 LNHFVPEVKDIRTV 189 L P++K + TV Sbjct: 60 LRESFPDIKGVETV 73 >gi|302784600|ref|XP_002974072.1| hypothetical protein SELMODRAFT_58377 [Selaginella moellendorffii] gi|300158404|gb|EFJ25027.1| hypothetical protein SELMODRAFT_58377 [Selaginella moellendorffii] Length = 162 Score = 94.1 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 2/79 (2%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 E+ + + +VLD VRP + DGG++ DG V L ++GAC CPS++ T+K G Sbjct: 15 ETYDFTAENVDKVLDE-VRPYLVADGGNVAVVSVADGTVSLELQGACGTCPSSTSTMKMG 73 Query: 172 VANILNHFVPE-VKDIRTV 189 + +L + VK++ + Sbjct: 74 IERVLREKFGDAVKEVVDI 92 >gi|86134908|ref|ZP_01053490.1| NifU-like protein [Polaribacter sp. MED152] gi|85821771|gb|EAQ42918.1| NifU-like protein [Polaribacter sp. MED152] Length = 78 Score = 94.1 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + +++ LD +RP + DGG+I D IV + ++GAC+GC TLK GV Sbjct: 4 QEIHNNVEKALDE-IRPFLMSDGGNIKLLSIEDAIVKVQLQGACTGCSVNQMTLKNGVEA 62 Query: 175 ILNHFVPEVKDIRTV 189 + + P+++ + V Sbjct: 63 TIKKYAPQIEQVINV 77 >gi|257059658|ref|YP_003137546.1| Fe-S cluster assembly protein NifU [Cyanothece sp. PCC 8802] gi|256589824|gb|ACV00711.1| Fe-S cluster assembly protein NifU [Cyanothece sp. PCC 8802] Length = 294 Score = 94.1 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 2/70 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I+++LD ++PA+A+DGGD+ +V + ++GAC C S+++TLK G+ L V Sbjct: 226 IQQILDEEIKPALAKDGGDVELFDVEGDLVKVILQGACGSCASSTQTLKMGIEARLRERV 285 Query: 181 -PEVKDIRTV 189 PE+ + +V Sbjct: 286 SPELT-VISV 294 >gi|194366446|ref|YP_002029056.1| HesB/YadR/YfhF-family protein [Stenotrophomonas maltophilia R551-3] gi|254767330|sp|B4SPV3|NFUA_STRM5 RecName: Full=Fe/S biogenesis protein nfuA gi|194349250|gb|ACF52373.1| HesB/YadR/YfhF-family protein [Stenotrophomonas maltophilia R551-3] Length = 199 Score = 94.1 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSAS 165 G+ +++V+R+ V++N + P +A GG + + +G+V L G C GC A Sbjct: 99 KGEAPGDAASLVERVHWVVENEINPQLASHGGKVAVQEVSAEGVVLLRFGGGCQGCGMAD 158 Query: 166 ETLKYGVANILNHFVPEVKDIRT 188 TLK G+ L VP V +R Sbjct: 159 VTLKQGIEKTLMGRVPGVTAVRD 181 >gi|189485737|ref|YP_001956678.1| hypothetical protein TGRD_734 [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287696|dbj|BAG14217.1| conserved hypothetical protein [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 75 Score = 94.1 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + +++++ L++ VRP + D GD+ DGIV + + G+C GCP A+ TL+YGV N Sbjct: 3 LREKVEKALES-VRPHLQADCGDVELIDVSEDGIVKVKLTGSCGGCPMAAMTLQYGVTNT 61 Query: 176 LNHFVPEVKDIRTV 189 + VPEVKD++++ Sbjct: 62 IKQAVPEVKDVQSI 75 >gi|2183204|gb|AAC33371.1| NifU [Cyanothece sp. PCC 8801] Length = 294 Score = 94.1 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 2/70 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I+++LD ++PA+A+DGGD+ +V + ++GAC C S+++TLK G+ L V Sbjct: 226 IQQILDEEIKPALAKDGGDVELFDVEGDLVKVILQGACGSCASSTQTLKMGIEARLRERV 285 Query: 181 -PEVKDIRTV 189 PE+ + +V Sbjct: 286 SPELT-VISV 294 >gi|310643822|ref|YP_003948580.1| nifu-like protein [Paenibacillus polymyxa SC2] gi|309248772|gb|ADO58339.1| NifU-like protein [Paenibacillus polymyxa SC2] Length = 81 Score = 94.1 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%) Query: 113 SDSAVVQRIKEVLD--NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 S++ VQ EV D +++RP + RDGGD+ DGIV L + GAC CPS++ TLK Sbjct: 2 SEAQSVQMYDEVADVLDKLRPFLQRDGGDVELVDVEDGIVKLKLVGACGSCPSSTITLKA 61 Query: 171 GVANIL 176 G+ L Sbjct: 62 GIERAL 67 >gi|332982274|ref|YP_004463715.1| nitrogen-fixing NifU domain-containing protein [Mahella australiensis 50-1 BON] gi|332699952|gb|AEE96893.1| nitrogen-fixing NifU domain protein [Mahella australiensis 50-1 BON] Length = 73 Score = 94.1 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + ++++ L+ ++RPA+ DGGD+ DG+V + + GAC CP A TLK G+ Sbjct: 1 MKEKVEAALE-KIRPALKADGGDVELVDVASDGVVKVKLTGACGACPFALMTLKQGIEET 59 Query: 176 LNHFVPEVKDIRTV 189 L VPEVK++ V Sbjct: 60 LKESVPEVKEVVAV 73 >gi|307720216|ref|YP_003891356.1| nitrogen-fixing NifU domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306978309|gb|ADN08344.1| nitrogen-fixing NifU domain protein [Sulfurimonas autotrophica DSM 16294] Length = 91 Score = 94.1 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD +++ +K V+D +VRP++A DGGDI F ++G V++ ++GAC GC S+ TL Sbjct: 1 MIPFSDEELLEPVKHVID-KVRPSLALDGGDIDFITVKNGNVYVQLKGACIGCASSGSTL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 KYGV L + PE+ + Sbjct: 60 KYGVERQLRMDIHPEITVV 78 >gi|295107477|emb|CBL05020.1| Thioredoxin-like proteins and domains [Gordonibacter pamelaeae 7-10-1-b] Length = 78 Score = 93.7 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 + VL+ +RP++ DGGD+ F DG+V + ++GAC GCP + TL GV IL Sbjct: 7 VAAVLE-LIRPSLQADGGDVRFVDVDEDGVVSVELQGACKGCPMSEMTLANGVERILKER 65 Query: 180 VPEVKDIRTV 189 VP V + V Sbjct: 66 VPGVTKVVAV 75 >gi|299139675|ref|ZP_07032848.1| nitrogen-fixing NifU domain protein [Acidobacterium sp. MP5ACTX8] gi|298598299|gb|EFI54464.1| nitrogen-fixing NifU domain protein [Acidobacterium sp. MP5ACTX8] Length = 197 Score = 93.7 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 3/103 (2%) Query: 86 ISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY 145 G+ I++ D+ + D R+ +++ VRP + GGD G Sbjct: 82 EEGERILNEALQDDLVSSMFLLHNLHPDDLET--RVLRGIES-VRPYLQEHGGDCELAGL 138 Query: 146 RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 +GIV L + G C CPS+S TLK V L P++K+I Sbjct: 139 DNGIVRLRLHGNCGSCPSSSLTLKNAVEEALFQAAPDIKEIIA 181 >gi|88801953|ref|ZP_01117481.1| NifU-like protein [Polaribacter irgensii 23-P] gi|88782611|gb|EAR13788.1| NifU-like protein [Polaribacter irgensii 23-P] Length = 78 Score = 93.7 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + ++ +++ L+ +RP + DGG+I DG+V + + GAC+GC TLK GV Sbjct: 2 TTEETLENVEKALEE-IRPFLMSDGGNIKLLSIEDGVVKVQLEGACTGCSVNQMTLKNGV 60 Query: 173 ANILNHFVPEVKDIRTV 189 + + P++ ++ V Sbjct: 61 EATIKKYAPQIVEVINV 77 >gi|310643918|ref|YP_003948676.1| nifu-like protein [Paenibacillus polymyxa SC2] gi|309248868|gb|ADO58435.1| NifU-like protein [Paenibacillus polymyxa SC2] Length = 79 Score = 93.7 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKY 170 ++ + + + EVL ++RP + RDGGD +GI L GAC+GCPSA+ TLK Sbjct: 1 MDENGVLFDEVSEVLL-KLRPFLLRDGGDAELVEVENGIAKLRFLGACNGCPSATITLKV 59 Query: 171 GVANILNHFVPEVKDIRTV 189 + + + ++K++ V Sbjct: 60 AIERAILEEIDDIKEVVQV 78 >gi|218289813|ref|ZP_03494013.1| nitrogen-fixing NifU domain protein [Alicyclobacillus acidocaldarius LAA1] gi|258510957|ref|YP_003184391.1| nitrogen-fixing NifU domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218240104|gb|EED07289.1| nitrogen-fixing NifU domain protein [Alicyclobacillus acidocaldarius LAA1] gi|257477683|gb|ACV58002.1| nitrogen-fixing NifU domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 81 Score = 93.7 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 3/82 (3%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASET 167 + ++ RI+E +++ +R A+ +DGGD+ F Y D V++S++GAC GCP++ T Sbjct: 1 MMSDVTSTEARIREAIES-IREAIQQDGGDVEFVSYDDLSKTVYVSLQGACVGCPASVMT 59 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 LK G+ + P+V+ + V Sbjct: 60 LKMGIERAVKKVAPDVEYVEAV 81 >gi|83645334|ref|YP_433769.1| thioredoxin-like protein [Hahella chejuensis KCTC 2396] gi|83633377|gb|ABC29344.1| Thioredoxin-like protein [Hahella chejuensis KCTC 2396] Length = 192 Score = 93.7 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 36/77 (46%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 + S + RI +L + P +A GG++ D + L G C GC + TLK G Sbjct: 103 DESSPLPDRINYILYTEINPGLASHGGEVSLVEVVDDVAVLKFGGGCQGCSAVDFTLKQG 162 Query: 172 VANILNHFVPEVKDIRT 188 V L +PE+K +R Sbjct: 163 VEKTLLSKIPELKGVRD 179 >gi|283768905|ref|ZP_06341815.1| NifU-like domain protein [Bulleidia extructa W1219] gi|283104458|gb|EFC05832.1| NifU-like domain protein [Bulleidia extructa W1219] Length = 100 Score = 93.7 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 +++RI+ LD ++RP + DGGD G+ DG V +SM GAC GC TL G+ I Sbjct: 16 ELLKRIQHTLD-KIRPYIQADGGDCELVGFDDGTVIISMTGACQGCGIIDITLNDGIKAI 74 Query: 176 LNHFVPEVKDIR 187 L VPEVKD++ Sbjct: 75 LMDEVPEVKDVK 86 >gi|190575128|ref|YP_001972973.1| putative iron-sulphur cluster/NifU like protein [Stenotrophomonas maltophilia K279a] gi|254767331|sp|B2FM87|NFUA_STRMK RecName: Full=Fe/S biogenesis protein nfuA gi|190013050|emb|CAQ46682.1| putative iron-sulphur cluster/NifU like protein [Stenotrophomonas maltophilia K279a] Length = 199 Score = 93.7 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSAS 165 G+ +++V+R+ V++N + P +A GG + + +G+V L G C GC A Sbjct: 99 KGEAPGDAASLVERVHWVVENEINPQLASHGGKVAVQEVSAEGVVLLRFGGGCQGCGMAD 158 Query: 166 ETLKYGVANILNHFVPEVKDIRT 188 TLK G+ L VP V +R Sbjct: 159 VTLKQGIEKTLMGRVPGVTAVRD 181 >gi|187250677|ref|YP_001875159.1| thioredoxin-like protein [Elusimicrobium minutum Pei191] gi|186970837|gb|ACC97822.1| Thioredoxin-like protein [Elusimicrobium minutum Pei191] Length = 74 Score = 93.7 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 3/75 (4%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVAN 174 + +I+EV+ +++P + DGGD+ F + + G V++S++G C GCP+A TLK + Sbjct: 1 MHSKIEEVI-AKIKPVLQADGGDLEFVSFDENTGTVYVSLKGRCGGCPAAQMTLKAVIER 59 Query: 175 ILNHFVPEVKDIRTV 189 + +PEVK + V Sbjct: 60 KIMQEIPEVKAVERV 74 >gi|124009117|ref|ZP_01693800.1| conserved domain protein [Microscilla marina ATCC 23134] gi|123985331|gb|EAY25251.1| conserved domain protein [Microscilla marina ATCC 23134] Length = 84 Score = 93.7 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLK 169 +++ +++R+ LD +RP + DGGD+ DG+V L + G+C CP ++ TLK Sbjct: 1 MDTTIDMIERVDNALDT-IRPYLKTDGGDVKVLEVSEDGVVKLELMGSCGSCPMSAMTLK 59 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ + VPE+ + + Sbjct: 60 AGIEESIRKAVPEITAVEAI 79 >gi|148244538|ref|YP_001219232.1| hypothetical protein COSY_0386 [Candidatus Vesicomyosocius okutanii HA] gi|254767332|sp|A5CX22|NFUA_VESOH RecName: Full=Fe/S biogenesis protein nfuA gi|146326365|dbj|BAF61508.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii HA] Length = 192 Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Query: 102 LDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSG 160 G+ + D+ + ++IK V+ + P +A GG + G I V L+ G C G Sbjct: 93 TAPNAKGEEPKEDAPLEEKIKYVIAADITPGLASHGGFVELVGITKQIDVILNFGGGCQG 152 Query: 161 CPSASETLKYGVANILNHFVPEVKDIRTV 189 C S TL+ GV L PE+K +R V Sbjct: 153 CSSVKSTLEQGVEAQLKARFPEIKSVRDV 181 >gi|242308908|ref|ZP_04808063.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239524572|gb|EEQ64438.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 81 Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 51/77 (66%), Gaps = 2/77 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 F+ SD +++ ++ V++ +VRP + DGG++ +G V++ + GAC GCPS+S+TL Sbjct: 1 MFVFSDQELLKPVEMVIE-KVRPMLINDGGNVTLLKIENGKVYVRLEGACKGCPSSSQTL 59 Query: 169 KYGVANILNHFV-PEVK 184 K+G+ L + + P+++ Sbjct: 60 KFGIERALKNEIHPDIE 76 >gi|256827894|ref|YP_003156622.1| nitrogen-fixing NifU domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256577070|gb|ACU88206.1| nitrogen-fixing NifU domain protein [Desulfomicrobium baculatum DSM 4028] Length = 73 Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + +++++ LD VRP + DGG + GIV + M GAC GCP A TLK + Sbjct: 1 MREQVEKALDT-VRPILQADGGYVELVNILPSGIVQVRMSGACKGCPMAQMTLKSSIERA 59 Query: 176 LNHFVPEVKDIRTV 189 + VP +K + V Sbjct: 60 VKKMVPGIKAVEAV 73 >gi|42525980|ref|NP_971078.1| NifU domain-containing protein [Treponema denticola ATCC 35405] gi|41816030|gb|AAS10959.1| NifU domain protein [Treponema denticola ATCC 35405] Length = 75 Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 4/73 (5%) Query: 121 IKEVLDN---RVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANIL 176 +KE ++ VRP + DGGDI + G V++ ++GAC CP A TLK GV L Sbjct: 3 VKEEIEKGIALVRPYLQADGGDIELDSVDEAGKVYVKLKGACGSCPMAIYTLKMGVEEQL 62 Query: 177 NHFVPEVKDIRTV 189 PEV ++ V Sbjct: 63 KDMFPEVTEVVAV 75 >gi|325954760|ref|YP_004238420.1| nitrogen-fixing NifU domain-containing protein [Weeksella virosa DSM 16922] gi|323437378|gb|ADX67842.1| nitrogen-fixing NifU domain-containing protein [Weeksella virosa DSM 16922] Length = 93 Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 ++ ++ + + LD +RP + DGGDI +D +V + ++GAC+ C TLK GV Sbjct: 2 NTELIDNVHKALDE-IRPFLNSDGGDIELVEVKDNVVKVRLKGACTSCSVNQMTLKAGVE 60 Query: 174 NILNHFVPEVKDIRTV 189 + FVPE+ + V Sbjct: 61 TTVKKFVPEIIKVIDV 76 >gi|154148473|ref|YP_001407292.1| NifU family protein [Campylobacter hominis ATCC BAA-381] gi|153804482|gb|ABS51489.1| NifU family protein [Campylobacter hominis ATCC BAA-381] Length = 88 Score = 93.3 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 50/79 (63%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD +++ +++ LD +RP + +DGGD+ G ++ +V++ ++GAC GC ++++TL Sbjct: 1 MIPFSDDELIEPVQKSLD-LIRPMLQKDGGDLELLGIKNAVVYVRLKGACHGCSASAQTL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 KYGV L + PE+ + Sbjct: 60 KYGVERQLKIDIHPEISVV 78 >gi|2688826|gb|AAB88877.1| putative NifU protein [Prunus armeniaca] Length = 76 Score = 92.9 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 2/76 (2%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 V + VL++ VRP + DGGD+ DG+V L ++GAC CPS++ T+K G+ Sbjct: 1 ELTVPNVDLVLED-VRPYLIADGGDVDVVSVEDGVVSLKLQGACGSCPSSTTTMKMGIER 59 Query: 175 ILNHFVPE-VKDIRTV 189 +L + +KDI+ V Sbjct: 60 VLKEKFGDALKDIQQV 75 >gi|224064633|ref|XP_002301529.1| predicted protein [Populus trichocarpa] gi|222843255|gb|EEE80802.1| predicted protein [Populus trichocarpa] Length = 216 Score = 92.9 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 1/97 (1%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLS 153 G + + + +++ VRP + DGG++ DG++ L Sbjct: 47 TAIKATAPTGSSSPGLYSAQQFELNPQNVDLVLEEVRPYLIADGGNVDVVSVEDGVISLK 106 Query: 154 MRGACSGCPSASETLKYGVANILNHFVPE-VKDIRTV 189 ++GAC CPS++ T+K G+ +L + +KDIR V Sbjct: 107 LQGACGDCPSSTTTMKMGIERVLKEKFGDAIKDIRQV 143 Score = 43.6 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 9/89 (10%) Query: 101 KLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSG 160 + D+ ES V+R+ LD +RPA+ GG + +G + G Sbjct: 136 AIKDIRQVSDEESKETTVERVNGHLDI-LRPAITNFGGSVEVLSVENGECRVQYTG---- 190 Query: 161 CPSASETLKYGVANILNHFVPEVKDIRTV 189 P + G+ + P++ D+ V Sbjct: 191 -PESIA---SGIKAAIKEKFPDIVDVVFV 215 >gi|313206297|ref|YP_004045474.1| nitrogen-fixing nifu domain protein [Riemerella anatipestifer DSM 15868] gi|312445613|gb|ADQ81968.1| nitrogen-fixing NifU domain protein [Riemerella anatipestifer DSM 15868] gi|315023020|gb|EFT36033.1| Nitrogen-fixing NifU, C-terminal [Riemerella anatipestifer RA-YM] gi|325336260|gb|ADZ12534.1| Thioredoxin-like protein [Riemerella anatipestifer RA-GD] Length = 78 Score = 92.9 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++++ R++ L++ +RP + +DGGDI D +V++ + G CSGCP + T+K GV Sbjct: 2 ENNSLEVRVENALES-IRPFLNKDGGDIELIKIEDTVVYVKLLGNCSGCPVSFSTMKLGV 60 Query: 173 ANILNHFVPEVKDIRTV 189 N + VPE+ + V Sbjct: 61 ENTVKEKVPEITRVENV 77 >gi|257790861|ref|YP_003181467.1| nitrogen-fixing NifU domain-containing protein [Eggerthella lenta DSM 2243] gi|317488428|ref|ZP_07946981.1| NifU-like domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325831888|ref|ZP_08164985.1| NifU-like protein [Eggerthella sp. HGA1] gi|257474758|gb|ACV55078.1| nitrogen-fixing NifU domain protein [Eggerthella lenta DSM 2243] gi|316912472|gb|EFV34028.1| NifU-like domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325486209|gb|EGC88661.1| NifU-like protein [Eggerthella sp. HGA1] Length = 77 Score = 92.9 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 + VL+ +RP++ DGGD+ DG+V + ++GAC GCP + TL GV IL Sbjct: 7 VAAVLE-LIRPSLQADGGDVRLVDVNEDGVVSVELQGACKGCPMSQMTLANGVERILKER 65 Query: 180 VPEVKDI 186 VP V + Sbjct: 66 VPGVTKV 72 >gi|162448199|ref|YP_001621331.1| NifU-like domain-containing protein [Acholeplasma laidlawii PG-8A] gi|161986306|gb|ABX81955.1| NifU-like domain protein [Acholeplasma laidlawii PG-8A] Length = 77 Score = 92.9 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + +++ +++ RVRP + RDGGDI DGIV++ M GAC GC + TLK G+ ++ Sbjct: 6 MTEQVGQII-KRVRPYIQRDGGDIELVNIEDGIVYVKMGGACDGCAAIDITLKQGIETMM 64 Query: 177 NHFVPEVKDIRTV 189 VP + + TV Sbjct: 65 LENVPGIIAVVTV 77 >gi|237752984|ref|ZP_04583464.1| NifU family protein [Helicobacter winghamensis ATCC BAA-430] gi|229375251|gb|EEO25342.1| NifU family protein [Helicobacter winghamensis ATCC BAA-430] Length = 81 Score = 92.9 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 49/73 (67%), Gaps = 2/73 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD+ +++ ++ +D +VRP + +DGG++ +G V++ + GAC GCPS+++TLK+G+ Sbjct: 5 SDTELLKPVEASID-KVRPMLIKDGGNVTLIKIENGKVYVRLEGACKGCPSSTQTLKFGI 63 Query: 173 ANILNHFV-PEVK 184 L + P+++ Sbjct: 64 ERTLKDDIHPDIE 76 >gi|225010130|ref|ZP_03700602.1| nitrogen-fixing NifU domain protein [Flavobacteria bacterium MS024-3C] gi|225005609|gb|EEG43559.1| nitrogen-fixing NifU domain protein [Flavobacteria bacterium MS024-3C] Length = 79 Score = 92.9 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 ++Q++++ LD +RP + DGGDI +G V + + GAC GC TLK GV Sbjct: 4 DELLQQVEKALDE-IRPFLQSDGGDIALEGIEGNTVKVRLMGACVGCSVNQMTLKSGVEL 62 Query: 175 ILNHFVPEVKDI 186 + + P+++ + Sbjct: 63 TIKKYAPQIEQV 74 >gi|110637337|ref|YP_677544.1| hypothetical protein CHU_0925 [Cytophaga hutchinsonii ATCC 33406] gi|110280018|gb|ABG58204.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406] Length = 86 Score = 92.9 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYG 171 ++ ++ R+++ L++ +RP + DGG++ D IV L + GAC CP ++ TLK G Sbjct: 6 ENTELLDRVEQALES-IRPYLITDGGNVRLVEITEDMIVKLELLGACGTCPMSAMTLKAG 64 Query: 172 VANILNHFVPEVKDIRTV 189 V + VPE+K + + Sbjct: 65 VEESIRKAVPEIKGVFAI 82 >gi|68349029|gb|AAY96420.1| YhgI [Halomonas elongata] Length = 196 Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLKYG 171 +DS + R+ VL + + P +A GG+I + + L+ G C GC + TLK G Sbjct: 107 ADSPLEDRVNYVLYSEINPGLAAHGGEIKLVQLTEEQVAVLAFGGGCQGCAAVDLTLKEG 166 Query: 172 VANILNHFVPEVKDIRTV 189 V L +PE+ IR V Sbjct: 167 VERTLMERIPELSGIRDV 184 >gi|304408198|ref|ZP_07389847.1| nitrogen-fixing NifU domain protein [Paenibacillus curdlanolyticus YK9] gi|304342886|gb|EFM08731.1| nitrogen-fixing NifU domain protein [Paenibacillus curdlanolyticus YK9] Length = 81 Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 S + + +VLD ++RP + RDGGD+ +GIV L + GAC CPS++ TLK G+ Sbjct: 7 STMYDEVLDVLD-KLRPFLQRDGGDVELVDVEEGIVKLRLVGACGSCPSSTITLKAGIER 65 Query: 175 IL 176 L Sbjct: 66 AL 67 >gi|325475673|gb|EGC78849.1| NifU domain-containing protein [Treponema denticola F0402] Length = 75 Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 4/73 (5%) Query: 121 IKEVLDN---RVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANIL 176 +KE ++ +RP + DGGDI + G V++ ++GAC CP A TLK GV L Sbjct: 3 VKEEVEKGIALIRPYLQADGGDIELDSVDEAGKVYVKLKGACGSCPMAIYTLKMGVEEQL 62 Query: 177 NHFVPEVKDIRTV 189 PEV ++ V Sbjct: 63 KDMFPEVTEVVAV 75 >gi|319891909|ref|YP_004148784.1| Nitrogen-fixing NifU domain protein [Staphylococcus pseudintermedius HKU10-03] gi|317161605|gb|ADV05148.1| Nitrogen-fixing NifU domain protein [Staphylococcus pseudintermedius HKU10-03] gi|323465000|gb|ADX77153.1| nitrogen fixation protein NifU [Staphylococcus pseudintermedius ED99] Length = 80 Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 1/64 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ + ++ EV++ ++RP + RDGGD DGIV L + GAC CPS++ TLK G+ Sbjct: 4 ENATMYDQVAEVIE-KLRPFLLRDGGDCELVDVEDGIVKLQLLGACGTCPSSTITLKAGI 62 Query: 173 ANIL 176 L Sbjct: 63 ERAL 66 >gi|223948699|gb|ACN28433.1| unknown [Zea mays] Length = 221 Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 2/105 (1%) Query: 86 ISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY 145 SG G + + + VLD+ VRP + DGG++ Sbjct: 43 TSGSRACLVAASASTPPAPGGGLYSAATYELTPENVDRVLDD-VRPYLISDGGNVTVVAV 101 Query: 146 RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE-VKDIRTV 189 DG++ L + GAC CPS++ T+ G+ +L + K+IR V Sbjct: 102 EDGVISLKLEGACGSCPSSTTTMNMGIERVLKEKFGDAFKEIRQV 146 >gi|226493520|ref|NP_001152596.1| LOC100286236 [Zea mays] gi|195657915|gb|ACG48425.1| NFU3 [Zea mays] Length = 221 Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 2/105 (1%) Query: 86 ISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY 145 SG G + + + VLD+ VRP + DGG++ Sbjct: 43 TSGSRACLVAASASTPPAPGGGLYSAATYELTPENVDRVLDD-VRPYLISDGGNVTVVAV 101 Query: 146 RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE-VKDIRTV 189 DG++ L + GAC CPS++ T+ G+ +L + K+IR V Sbjct: 102 EDGVISLKLEGACGSCPSSTTTMNMGIERVLKEKFGDAFKEIRQV 146 >gi|75910119|ref|YP_324415.1| Fe-S cluster assembly protein NifU [Anabaena variabilis ATCC 29413] gi|7387938|sp|Q43885|NIFU_ANAAZ RecName: Full=Nitrogen fixation protein nifU gi|762779|gb|AAA87250.1| NifU gene product [Anabaena azollae] gi|75703844|gb|ABA23520.1| Fe-S cluster assembly protein NifU [Anabaena variabilis ATCC 29413] Length = 300 Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 3/115 (2%) Query: 77 VLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE-SDSAVVQRIKEVLDNRVRPAVAR 135 + +I + + N G + SG ++ + I++VLD VRP + Sbjct: 187 IDDIIKDVKENKAATNLNNKGGSKPTNIPNSGQKRPLTNVQKIALIQKVLDEEVRPVLIA 246 Query: 136 DGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV-PEVKDIRTV 189 DGGD+ IV + ++GAC C S++ TLK + + L + P + + V Sbjct: 247 DGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRINPSLV-VEAV 300 >gi|17228950|ref|NP_485498.1| nitrogen fixation protein [Nostoc sp. PCC 7120] gi|128316|sp|P20628|NIFU_ANASP RecName: Full=Nitrogen fixation protein nifU gi|97707|pir||D34443 nitrogen fixation protein nifU - Anabaena sp gi|142038|gb|AAA22007.1| nifU [Nostoc sp. PCC 7120] gi|17130802|dbj|BAB73412.1| nitrogen fixation protein [Nostoc sp. PCC 7120] Length = 300 Score = 92.5 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 3/115 (2%) Query: 77 VLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE-SDSAVVQRIKEVLDNRVRPAVAR 135 + +I + + N G + SG ++ + I++VLD VRP + Sbjct: 187 IDDIIKDVKENKAATNLNNKGGSKPTNIPNSGQKRPLTNVQKIALIQKVLDEEVRPVLIA 246 Query: 136 DGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV-PEVKDIRTV 189 DGGD+ IV + ++GAC C S++ TLK + + L + P + + V Sbjct: 247 DGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRINPSLV-VEAV 300 >gi|302335395|ref|YP_003800602.1| nitrogen-fixing NifU domain protein [Olsenella uli DSM 7084] gi|301319235|gb|ADK67722.1| nitrogen-fixing NifU domain protein [Olsenella uli DSM 7084] Length = 85 Score = 92.5 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKY 170 E+ + + + + E + +R ++ DGGD+ G+ +G+V L M+GAC+GCP +S + Sbjct: 4 ETKTPINRELLEATLDVIRQSLQADGGDVALVGFNDEGVVTLEMQGACAGCPLSSLDMSE 63 Query: 171 GVANILNHFVPEVKDIRT 188 G+ IL VP V + Sbjct: 64 GIERILKEHVPGVTKVEP 81 >gi|284162204|ref|YP_003400827.1| nitrogen-fixing NifU domain protein [Archaeoglobus profundus DSM 5631] gi|284012201|gb|ADB58154.1| nitrogen-fixing NifU domain protein [Archaeoglobus profundus DSM 5631] Length = 77 Score = 92.5 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVAN 174 + ++++EV++ +RP + DGG+I + GIV + + GAC GCP A TL V Sbjct: 3 LREKVEEVVNKEIRPYLMADGGNIAVVDVDEKEGIVKVKLMGACYGCPMAQITLTAFVEQ 62 Query: 175 ILNHFVPEVKDIRTV 189 L +PEVK + V Sbjct: 63 HLKSRIPEVKKVIPV 77 >gi|312890429|ref|ZP_07749966.1| nitrogen-fixing NifU domain protein [Mucilaginibacter paludis DSM 18603] gi|311297199|gb|EFQ74331.1| nitrogen-fixing NifU domain protein [Mucilaginibacter paludis DSM 18603] Length = 92 Score = 92.2 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANI 175 ++ +++ LD +RP + DGG++ + D +V L + G+C CP + TLK G+ Sbjct: 3 ILDQVEAALDT-IRPYLETDGGNVSVEEITADNVVKLKLLGSCGSCPMSIMTLKAGIEQA 61 Query: 176 LNHFVPEVKDIRTV 189 + VPEV + + Sbjct: 62 IKKAVPEVTGVEAI 75 >gi|75910444|ref|YP_324740.1| Fe-S cluster assembly protein NifU [Anabaena variabilis ATCC 29413] gi|1236928|gb|AAA93019.1| NifU2 [Anabaena variabilis ATCC 29413] gi|75704169|gb|ABA23845.1| Fe-S cluster assembly protein NifU [Anabaena variabilis ATCC 29413] Length = 309 Score = 92.2 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 1/115 (0%) Query: 76 PVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE-SDSAVVQRIKEVLDNRVRPAVA 134 + +I P+ + L + + + I++VLD VRP + Sbjct: 185 DIDDLISAVIKESAPVGTSYKLSTQIAATTQKQSPRQLTTVQKIALIQKVLDEEVRPLLI 244 Query: 135 RDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 DGGDI + V + ++GAC CPS++ TLK V L V + + V Sbjct: 245 ADGGDIELYDVQGDNVQVVLQGACGSCPSSTATLKVAVEAKLQERVSQSLRVEAV 299 >gi|291333447|gb|ADD93149.1| nitrogen fixing NifU-like protein [uncultured archaeon MedDCM-OCT-S05-C57] Length = 160 Score = 92.2 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 14/149 (9%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I+ E T +P +F+ VL + F + +PLA R+ ++P IA V +T Sbjct: 8 IRGEPTADPQKCRFVLEAEVLSRSPVSFDRESDTSKAPLAERLLALPYIAGVSISGSAVT 67 Query: 63 VGKDQYD-WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRI 121 + D + W + + G+I E +G+P + + D+ + ++ Sbjct: 68 LTGDNVESWPAIGKEIGGVIREQIKTGEPAVEEEVMDI-------------GDADLFTQV 114 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIV 150 ++ N V P++A GG I DG Sbjct: 115 NLLIKNDVNPSIASHGGTITLHSVNDGKA 143 >gi|256827631|ref|YP_003151590.1| thioredoxin-like protein [Cryptobacterium curtum DSM 15641] gi|256583774|gb|ACU94908.1| thioredoxin-like protein [Cryptobacterium curtum DSM 15641] Length = 75 Score = 92.2 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + + VL+ VRP++ DGGD+ DG V + ++GAC GCP + TL +G+ IL Sbjct: 5 EDVAAVLE-LVRPSLQADGGDVRLVDVMEDGTVTVELQGACQGCPMSQMTLAHGIERILK 63 Query: 178 HFVPEVKDI 186 VP V+ + Sbjct: 64 DRVPGVQQV 72 >gi|303290897|ref|XP_003064735.1| predicted protein [Micromonas pusilla CCMP1545] gi|226453761|gb|EEH51069.1| predicted protein [Micromonas pusilla CCMP1545] Length = 153 Score = 92.2 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + +++VLD VRP + DGGD+ +V L + GAC CPS++ T++ G+ Sbjct: 2 ELTAENVEKVLDE-VRPYLIADGGDVELVEIDGLVVRLKLNGACGSCPSSTVTMRMGIER 60 Query: 175 ILNHFVPEV 183 L +PE+ Sbjct: 61 RLLEVIPEI 69 Score = 43.6 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 5/73 (6%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + + E + +RP + GG + + IV + + G ++ T++ V Sbjct: 83 ELNEANVEATLDEIRPYLKGTGGGELELVDIEEPIVKIKLSGP----AASVMTVRVAVTQ 138 Query: 175 ILNHFVPEVKDIR 187 L +P + ++ Sbjct: 139 KLREKMPSIAAVQ 151 >gi|21674600|ref|NP_662665.1| NifU protein, putative [Chlorobium tepidum TLS] gi|21647799|gb|AAM73007.1| nifU protein, putative [Chlorobium tepidum TLS] Length = 83 Score = 92.2 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASET 167 D++ + ++ L+ VRP + DGGD G +D +V + + GAC CP ++ T Sbjct: 3 DYLPKTDPLYDKVISALET-VRPYLQVDGGDCQLVGITKDMVVDVKLLGACGSCPMSTLT 61 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 L+ GV + PE+ + +V Sbjct: 62 LRAGVEQAIKKANPEIVRVESV 83 >gi|319760689|ref|YP_004124627.1| Fe/S biogenesis protein nfuA [Candidatus Blochmannia vafer str. BVAF] gi|318039403|gb|ADV33953.1| Fe/S biogenesis protein nfuA [Candidatus Blochmannia vafer str. BVAF] Length = 202 Score = 92.2 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 1/111 (0%) Query: 79 GMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGG 138 +I + + I + I ++S++ RIK V+ ++ P +A GG Sbjct: 80 DIITDDLRTQITIQSPNLTNSIDNPSDNINKKITNNSSLTDRIKYVITQQINPQLAMHGG 139 Query: 139 DIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 + DG+ L G C+GC A T+K G+ L F PE+K + Sbjct: 140 SVSLIKVNTDGMAILQFHGGCNGCSMALYTIKEGIEKTLKKFFPELKGVID 190 >gi|21231527|ref|NP_637444.1| hypothetical protein XCC2079 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768417|ref|YP_243179.1| hypothetical protein XC_2103 [Xanthomonas campestris pv. campestris str. 8004] gi|51702176|sp|Q8P8Z9|NFUA_XANCP RecName: Full=Fe/S biogenesis protein nfuA gi|81305609|sp|Q4UUW4|NFUA_XANC8 RecName: Full=Fe/S biogenesis protein nfuA gi|21113208|gb|AAM41368.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573749|gb|AAY49159.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 199 Score = 92.2 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSAS 165 G+ +++V+R++ V++N + P +A GG + + +G+V L G C GC A Sbjct: 99 KGEAPAESASMVERVRWVVENEINPQLASHGGRVAVQEVSAEGVVLLRFGGGCHGCGMAD 158 Query: 166 ETLKYGVANILNHFVPEVKDIRT 188 TLK G+ L +P V +R Sbjct: 159 VTLKQGIEKTLMGRLPGVIAVRD 181 >gi|257456257|ref|ZP_05621454.1| NifU-like domain protein [Treponema vincentii ATCC 35580] gi|257446343|gb|EEV21389.1| NifU-like domain protein [Treponema vincentii ATCC 35580] Length = 75 Score = 92.2 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 V +K+ LD VRP + DGGD+ F DG+V + ++GAC CP A TLK G+ Sbjct: 3 TVDEVKQALD-VVRPHLQADGGDVEFVSLSDDGVVSVRLKGACGSCPVALMTLKSGIEAQ 61 Query: 176 LNHFVPEVKDIRTV 189 L P++K + ++ Sbjct: 62 LKESYPDIKKVVSI 75 >gi|164688813|ref|ZP_02212841.1| hypothetical protein CLOBAR_02460 [Clostridium bartlettii DSM 16795] gi|164602289|gb|EDQ95754.1| hypothetical protein CLOBAR_02460 [Clostridium bartlettii DSM 16795] Length = 73 Score = 92.2 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + +++ VLD +VRP + RDGGD+ DG+V + ++GACSGCP A+ TLK + N+ Sbjct: 1 MKEQVAAVLD-KVRPVLQRDGGDVELVEVSDDGVVLVRLKGACSGCPGATMTLKAVIENL 59 Query: 176 LNHFVPEVKDIRTV 189 L VP V + V Sbjct: 60 LVKEVPGVTRVVGV 73 >gi|257453557|ref|ZP_05618847.1| IscR-regulated protein YhgI [Enhydrobacter aerosaccus SK60] gi|257449015|gb|EEV23968.1| IscR-regulated protein YhgI [Enhydrobacter aerosaccus SK60] Length = 205 Score = 92.2 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 59/166 (35%), Gaps = 17/166 (10%) Query: 38 ISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGG 96 + RIF PG + ++++ + L+ P + + Sbjct: 29 TDGIGVRIFVEHPGTPRAECCMSY--SQPNEHNPDDLKLDYETFTAYIDTPSIPYLEDAV 86 Query: 97 LGDMKLDDMGSGDFIE---------SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-- 145 + K G F ++++ +RI VL + + P +A GG++ Sbjct: 87 IDYNKDRFGGQLTFRAPNSKVPKLGENASLEERINYVLSSEINPNLASHGGNVQLVDLVH 146 Query: 146 RDGI---VFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 +G+ L G C GC + TLK GV L +PE+ + Sbjct: 147 EEGVGITAVLKFGGGCQGCSAVDMTLKQGVEVSLKQQIPELTQVID 192 >gi|92114011|ref|YP_573939.1| HesB/YadR/YfhF [Chromohalobacter salexigens DSM 3043] gi|91797101|gb|ABE59240.1| HesB/YadR/YfhF [Chromohalobacter salexigens DSM 3043] Length = 196 Score = 92.2 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 11/123 (8%) Query: 78 LGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIES----------DSAVVQRIKEVLDN 127 L I + + D D MG I++ DS + R+ VL + Sbjct: 62 LDKITVYLEKNSIAFLEEAVVDFNADRMGGQLTIKAPNAKMPKVNADSPLEDRVNYVLYS 121 Query: 128 RVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 + P +A GG+I + + L G C GC + TLK GV L VPE+ I Sbjct: 122 EINPGLAAHGGEIRLMQLTEENVAVLQFGGGCQGCAAVDLTLKEGVEKTLIERVPELAGI 181 Query: 187 RTV 189 R V Sbjct: 182 RDV 184 >gi|836637|emb|CAA83509.1| nifU [Nostoc sp. PCC 6720] gi|1091584|prf||2021269A dinitrogenase reductase Length = 87 Score = 92.2 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ + I++VLD VRP + DGGD+ IV + ++GAC C S++ TLK + Sbjct: 10 TNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAI 69 Query: 173 ANILNHFV-PEVKDIRTV 189 + L + P + + V Sbjct: 70 ESRLRDRINPSLVVVEAV 87 >gi|188991774|ref|YP_001903784.1| Thioredoxin-like protein [Xanthomonas campestris pv. campestris str. B100] gi|254767335|sp|B0RTH4|NFUA_XANCB RecName: Full=Fe/S biogenesis protein nfuA gi|167733534|emb|CAP51738.1| Thioredoxin-like protein [Xanthomonas campestris pv. campestris] Length = 199 Score = 92.2 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSAS 165 G+ +++V+ ++ V++N + P +A GG + + +G+V L G C GC A Sbjct: 99 KGEAPAESASMVECVRWVVENEINPQLASHGGRVAVQEVSAEGVVLLRFGGGCHGCGMAD 158 Query: 166 ETLKYGVANILNHFVPEVKDIRT 188 TLK G+ L VP V +R Sbjct: 159 VTLKQGIEKTLMGRVPGVIAVRD 181 >gi|307108673|gb|EFN56913.1| hypothetical protein CHLNCDRAFT_144603 [Chlorella variabilis] Length = 149 Score = 91.8 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 ++ + ++ VLD VRP + DGG++ F +V+L + GAC CPS+ T+ G Sbjct: 16 DTLELTEENVETVLDE-VRPYLMADGGNVEFVEIDGPVVYLRLAGACGSCPSSLTTMTMG 74 Query: 172 VANILNHFVP 181 + L +P Sbjct: 75 IKRRLMERIP 84 Score = 39.8 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 6/54 (11%) Query: 137 GGDIVFKGYRDGIVFLSMRGACSGCPSAS-ETLKYGVANILNHFVPEVKDIRTV 189 GG + I + + G P+A+ T++ V L +P + ++ V Sbjct: 100 GGGLELVELDGPIAKVRITG-----PAANVMTVRVAVTQKLRERIPAIAAVQLV 148 >gi|254514377|ref|ZP_05126438.1| IscR-regulated protein YhgI [gamma proteobacterium NOR5-3] gi|219676620|gb|EED32985.1| IscR-regulated protein YhgI [gamma proteobacterium NOR5-3] Length = 196 Score = 91.8 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 62/182 (34%), Gaps = 13/182 (7%) Query: 18 PGQVVLVEGAIHFSNAKEAEISPLASRIF-SIPGIASVYFGYDFITVGKDQYDWEHLRPP 76 P + + + + L R+F + PG A + + + ++ P Sbjct: 5 PMLTITESAQDYLAELLAKQEDALGVRVFINEPGTARAETCIAYC--REGDISEDDVKHP 62 Query: 77 VLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE---------SDSAVVQRIKEVLDN 127 + P + + + G DS + RI +L N Sbjct: 63 FEKITAWFDGRSVPFLEDALVDYSTDRMGGQLTIKAPNAKMPRVSDDSPIEDRINYLLYN 122 Query: 128 RVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 V P++A GG++ D L G C GC + TLK GV L +P++K + Sbjct: 123 EVNPSLAAHGGEVSLVEVTEDAYAVLRFGGGCQGCSAVDMTLKDGVEKTLLDQLPQLKGV 182 Query: 187 RT 188 R Sbjct: 183 RD 184 >gi|88703284|ref|ZP_01101000.1| HesB/YadR/YfhF family protein [Congregibacter litoralis KT71] gi|88701998|gb|EAQ99101.1| HesB/YadR/YfhF family protein [Congregibacter litoralis KT71] Length = 191 Score = 91.8 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYG 171 DS + RI VL N V P++A GG++ D L G C GC + TLK G Sbjct: 103 DDSPIEDRINYVLYNEVNPSLAAHGGEVSLVEVTDDAFAVLRFGGGCQGCSAVDMTLKDG 162 Query: 172 VANILNHFVPEVKDIRT 188 V L +P++K +R Sbjct: 163 VEKTLLDQLPQLKGVRD 179 >gi|67922888|ref|ZP_00516385.1| Aminotransferase, class V:Nitrogen-fixing NifU, C-terminal [Crocosphaera watsonii WH 8501] gi|67855238|gb|EAM50500.1| Aminotransferase, class V:Nitrogen-fixing NifU, C-terminal [Crocosphaera watsonii WH 8501] Length = 469 Score = 91.8 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 13/115 (11%) Query: 76 PVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVAR 135 ++ I+ H S P I + + I+++L+ V+P +A+ Sbjct: 367 EIVPDIISHLRSITPRIEDETTSSPTKE-----------QEKANLIQQILEEEVKPFLAQ 415 Query: 136 DGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV-PEVKDIRTV 189 DGGDI +V + ++GAC CPS++ TLK + L V PE+ + V Sbjct: 416 DGGDIDLYDIEGDLVKVVLKGACDACPSSTATLKLAIEARLKDRVDPELT-VIAV 469 >gi|150016970|ref|YP_001309224.1| NifU domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149903435|gb|ABR34268.1| nitrogen-fixing NifU domain protein [Clostridium beijerinckii NCIMB 8052] Length = 93 Score = 91.8 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++ I V++ +++P +A GDI +G+ ++ + GACSGCPSA T++ ++ +L Sbjct: 5 MIDEINNVINTKIKPLLAEHNGDIELVEVNNGVAYVKLLGACSGCPSARFTMEELISCVL 64 Query: 177 NHFVPEVKDIRTV 189 +PE+KD++ V Sbjct: 65 KE-IPEIKDVQLV 76 >gi|285018390|ref|YP_003376101.1| protein gnty [Xanthomonas albilineans GPE PC73] gi|283473608|emb|CBA16111.1| probable protein gnty [Xanthomonas albilineans] Length = 198 Score = 91.4 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSAS 165 G+ +++V+R++ V++N V P +A GG + + DG+V L G C GC A Sbjct: 98 KGEAPGEAASLVERVRWVVENEVNPQLAEHGGRVAVQEVSADGVVVLRFGGGCHGCGMAD 157 Query: 166 ETLKYGVANILNHFVPEVKDIRT 188 TLK G+ L V V +R Sbjct: 158 VTLKQGIEKTLMGRVSGVTAVRD 180 >gi|57168801|ref|ZP_00367932.1| nifU protein homolog Cj1639 [Campylobacter coli RM2228] gi|305432457|ref|ZP_07401619.1| NifU family protein [Campylobacter coli JV20] gi|57019848|gb|EAL56531.1| nifU protein homolog Cj1639 [Campylobacter coli RM2228] gi|304444496|gb|EFM37147.1| NifU family protein [Campylobacter coli JV20] Length = 90 Score = 91.4 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD ++ +K LD + P + RDGG + F G ++G+V++ + GAC GC S+ TL Sbjct: 1 MMPFSDEELINPVKASLDKSM-PMLERDGGGLEFLGIKNGVVYVHLIGACKGCASSGTTL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 KYG+ L + PE+ + Sbjct: 60 KYGLERQLKIDIHPEITIV 78 >gi|307105277|gb|EFN53527.1| hypothetical protein CHLNCDRAFT_58507 [Chlorella variabilis] Length = 496 Score = 91.4 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V+ + LD+ VRP + DGG++ DG VFL ++GAC CPS++ T+K G+ L Sbjct: 340 TVEAVDAALDD-VRPYLIADGGNVDVVAVEDGRVFLQLQGACGTCPSSTATMKMGIERSL 398 Query: 177 NHFVP-EVKDIRTV 189 ++ ++ V Sbjct: 399 KAAFGKQLVEVLQV 412 >gi|323436167|ref|ZP_01051062.2| NifU-like protein [Dokdonia donghaensis MED134] gi|321496482|gb|EAQ38213.2| NifU-like protein [Dokdonia donghaensis MED134] Length = 88 Score = 91.4 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASET 167 + S + + Q++++ L+ +RP + DGGDI G D +V + ++GAC GC T Sbjct: 6 ELSMSTAELTQKVEDALEE-IRPFLQSDGGDISLLGIDDDRVVRVQLQGACVGCSVNQMT 64 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 LK GV + P+++ + V Sbjct: 65 LKSGVEMTIKKHAPQIEQVINV 86 >gi|34558002|ref|NP_907817.1| hypothetical protein WS1690 [Wolinella succinogenes DSM 1740] gi|34483720|emb|CAE10717.1| conserved hypothetical protein-Thioredoxin-like proteins and domains [Wolinella succinogenes] Length = 91 Score = 91.4 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 F SD +++ ++ VL+ +VRP +A DGGD+ G V++ + GAC GC S++ TL Sbjct: 1 MFPFSDDDLLKPVERVLE-KVRPTLALDGGDVSLIGVAAPKVYVRLEGACKGCASSALTL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 K G+ + + PE++ + Sbjct: 60 KNGIERQMRLEIHPEIEIV 78 >gi|254282987|ref|ZP_04957955.1| IscR-regulated protein YhgI [gamma proteobacterium NOR51-B] gi|219679190|gb|EED35539.1| IscR-regulated protein YhgI [gamma proteobacterium NOR51-B] Length = 191 Score = 91.4 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKY 170 + DS + RI +L N V P++A GG++ + L G C GC + TLK Sbjct: 102 DPDSPIEDRINYILYNEVNPSLAAHGGEVSLVEVTDEKYAILRFGGGCQGCSAVDVTLKD 161 Query: 171 GVANILNHFVPEVKDIRT 188 GV L +PE+ +R Sbjct: 162 GVEKTLVEQLPELTGVRD 179 >gi|223984131|ref|ZP_03634283.1| hypothetical protein HOLDEFILI_01575 [Holdemania filiformis DSM 12042] gi|223963925|gb|EEF68285.1| hypothetical protein HOLDEFILI_01575 [Holdemania filiformis DSM 12042] Length = 82 Score = 91.4 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + ++K V++ ++RP + RDGGD+ F DGIV + M GACS C S TLK G+ Sbjct: 2 ETMETQVKNVIE-KIRPYIQRDGGDVEFVSLEDGIVTVKMLGACSECLSLDATLKDGIEA 60 Query: 175 ILNHFVPEVKDIR 187 IL VP V ++R Sbjct: 61 ILLDEVPGVTEVR 73 >gi|254429726|ref|ZP_05043433.1| HesB-like domain protein [Alcanivorax sp. DG881] gi|196195895|gb|EDX90854.1| HesB-like domain protein [Alcanivorax sp. DG881] Length = 198 Score = 91.4 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLKYG 171 D+++ ++I VL + P +A GG + D + L G C GC TL+ G Sbjct: 109 EDASIEEKINYVLYAEINPNLAAHGGSVQLLELTEDNVAVLEFGGGCQGCSVVDVTLRDG 168 Query: 172 VANILNHFVPEVKDIRT 188 V L +PE+ +R Sbjct: 169 VEKTLQERIPELAGVRD 185 >gi|218438784|ref|YP_002377113.1| Rieske (2Fe-2S) domain protein [Cyanothece sp. PCC 7424] gi|218171512|gb|ACK70245.1| Rieske (2Fe-2S) domain protein [Cyanothece sp. PCC 7424] Length = 309 Score = 91.0 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSAS 165 + +RI++ LD VRP + GD+ V + + G CS CP+++ Sbjct: 88 HELIKPPQPPLEKRIQQALDE-VRPGLKSHNGDVELVAIELPDTVKVRLVGTCSNCPAST 146 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 T+K GV + ++ PE+ + ++ Sbjct: 147 LTMKQGVEQTIKNYCPEITQVISI 170 >gi|320526969|ref|ZP_08028158.1| NifU-like domain protein [Solobacterium moorei F0204] gi|320132554|gb|EFW25095.1| NifU-like domain protein [Solobacterium moorei F0204] Length = 109 Score = 91.0 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 92 IHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVF 151 + + D+ + + ++QRI+ LD ++RP + DGGD+ GY DG+V Sbjct: 1 MSDTDFYSESSADLIALETDPVRKDLLQRIQHTLD-KIRPYIQADGGDVFLVGYADGVVT 59 Query: 152 LSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 ++M GAC+GC TL G+ IL VPEV D+R Sbjct: 60 VTMTGACNGCMVMDSTLNDGIKAILLDEVPEVHDVR 95 >gi|288574803|ref|ZP_06393160.1| nitrogen-fixing NifU domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570544|gb|EFC92101.1| nitrogen-fixing NifU domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 77 Score = 91.0 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVAN 174 ++ RI EV+D +RPA+ GGD+ + + G++ ++GAC CP A ETL+ V Sbjct: 3 LIDRINEVVDKSIRPALQSHGGDVEVVSFDEESGVISARLQGACGTCPFAQETLRMQVEA 62 Query: 175 ILNHFVPEVKDI 186 +L +PEV + Sbjct: 63 VLKREIPEVSSV 74 >gi|302784594|ref|XP_002974069.1| hypothetical protein SELMODRAFT_16558 [Selaginella moellendorffii] gi|300158401|gb|EFJ25024.1| hypothetical protein SELMODRAFT_16558 [Selaginella moellendorffii] Length = 170 Score = 91.0 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 2/104 (1%) Query: 87 SGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR 146 S ++ + E+ + + +VLD VRP + DGG++ Sbjct: 1 SSREVVSPFESSNTSSTAGSGLYSAETYDFTAENVDKVLDE-VRPYLVADGGNVAVVSVA 59 Query: 147 DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE-VKDIRTV 189 DG V L ++ AC CPS++ T+K G+ +L + VK++ + Sbjct: 60 DGTVSLELQRACGTCPSSTSTMKMGIERVLREKFGDAVKEVVDI 103 >gi|289643389|ref|ZP_06475510.1| iron-sulfur cluster assembly accessory protein [Frankia symbiont of Datisca glomerata] gi|289506787|gb|EFD27765.1| iron-sulfur cluster assembly accessory protein [Frankia symbiont of Datisca glomerata] Length = 198 Score = 91.0 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 1/102 (0%) Query: 85 FISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG 144 F+ +P + + + + +++ E + +VRP + RDGGD+ Sbjct: 94 FVFSNPRAADPCSCGSSFSADAAERQEGDEDTLWRQVDEAIQ-QVRPFLQRDGGDVTVVD 152 Query: 145 YRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 G+V + + GAC GC +A +TL + L VP V+ + Sbjct: 153 ITAGVVSVRLTGACGGCSAALDTLTGVIERQLKESVPAVERV 194 >gi|4558563|gb|AAD22656.1|AC007138_20 putative NifU-like metallocluster assembly factor [Arabidopsis thaliana] gi|7268578|emb|CAB80687.1| putative NifU-like metallocluster assembly factor [Arabidopsis thaliana] Length = 174 Score = 91.0 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 2/76 (2%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 Q + VL++ VRP + DGG++ DG+V L ++GAC+ CPS+S T+ G+ Sbjct: 83 DLTPQNVDLVLED-VRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIER 141 Query: 175 ILNHFVPE-VKDIRTV 189 +L + +KDIR V Sbjct: 142 VLKEKFGDALKDIRQV 157 >gi|258404239|ref|YP_003196981.1| Fe-S cluster assembly protein NifU [Desulfohalobium retbaense DSM 5692] gi|257796466|gb|ACV67403.1| Fe-S cluster assembly protein NifU [Desulfohalobium retbaense DSM 5692] Length = 283 Score = 90.6 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ +Q + +V++ +RP++ +DGGDI V +++RG CSGCPS+ TLK V Sbjct: 205 TNIQRMQLVNDVIEKEIRPSLQKDGGDIELIDIEGREVQVALRGMCSGCPSSQLTLKNVV 264 Query: 173 ANILNHFV-PEVK 184 L V PE+ Sbjct: 265 ERRLQERVEPEIT 277 >gi|325105698|ref|YP_004275352.1| nitrogen-fixing NifU domain protein [Pedobacter saltans DSM 12145] gi|324974546|gb|ADY53530.1| nitrogen-fixing NifU domain protein [Pedobacter saltans DSM 12145] Length = 89 Score = 90.6 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLK 169 +ES + ++ LD +RP + DGG++ + D +V L + GAC CP + TLK Sbjct: 1 MESRDNLFNEVERALDT-IRPYLVADGGNVSVEEITNDNVVKLKLLGACGSCPMSFMTLK 59 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ + VP + + + Sbjct: 60 AGIEQAVKKAVPSITAVEAI 79 >gi|46580957|ref|YP_011765.1| NifU family protein [Desulfovibrio vulgaris str. Hildenborough] gi|46450377|gb|AAS97025.1| NifU family protein [Desulfovibrio vulgaris str. Hildenborough] Length = 81 Score = 90.6 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLK 169 + D + ++++ L VRP + +DGGD+ +G+V + + G C GCP + +TLK Sbjct: 1 MSEDIPMRDKVEQAL-AIVRPLLQQDGGDVELVDITPEGVVRVRLTGRCKGCPMSQKTLK 59 Query: 170 YGVANILNHFVPEVKDIRTV 189 V ++ FVP V+ + V Sbjct: 60 NSVEKMVLKFVPAVQRVEAV 79 >gi|260771979|ref|ZP_05880896.1| protein gntY [Vibrio metschnikovii CIP 69.14] gi|260612846|gb|EEX38048.1| protein gntY [Vibrio metschnikovii CIP 69.14] Length = 166 Score = 90.6 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 54/153 (35%), Gaps = 10/153 (6%) Query: 46 FSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIME-----HFISGDPIIHNGGLGD 99 F + PG + G + + + ++ + + +G Sbjct: 2 FVVNPGTQNAECGVSYCPPEAVEKTDTVIPFTDFSAYVDELSLPFLENAEIDFVTDKMGS 61 Query: 100 MKLDDMGSGDFI--ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRG 156 + + D+ ++ R++ + +V P +A GG + +G+ L G Sbjct: 62 QLTLKAPNAKMRKVDDDAPLMARVEYAIQTQVNPQLAGHGGHVSLVNITDEGVALLQFGG 121 Query: 157 ACSGCPSASETLKYGVAN-ILNHFVPEVKDIRT 188 C+GC TLK G+ +L F E+ +R Sbjct: 122 GCNGCSMVDVTLKEGIEKELLAQFAGELTAVRD 154 >gi|110834051|ref|YP_692910.1| hypothetical protein ABO_1190 [Alcanivorax borkumensis SK2] gi|110647162|emb|CAL16638.1| yhgI conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 198 Score = 90.6 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLKYG 171 D+ + ++I VL + P +A GG + D + L G C GC TL+ G Sbjct: 109 EDATIEEKINYVLYAEINPNLAAHGGSVQLLELTDDNVAVLEFGGGCQGCSVVDVTLRDG 168 Query: 172 VANILNHFVPEVKDIRT 188 V L +PE+ +R Sbjct: 169 VEKTLQERIPELAGVRD 185 >gi|126656503|ref|ZP_01727764.1| Fe-S cluster assembly protein NifU [Cyanothece sp. CCY0110] gi|126622189|gb|EAZ92896.1| Fe-S cluster assembly protein NifU [Cyanothece sp. CCY0110] Length = 293 Score = 90.6 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 6/115 (5%) Query: 76 PVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVAR 135 + +I E + ++ S ++ + I++VL+ VRPA+A+ Sbjct: 184 DIDDLIAEIVQEKATAVAVA----TEVVKAKSESLPLTNLQKITLIQQVLEEEVRPALAQ 239 Query: 136 DGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV-PEVKDIRTV 189 DGGD+ +V + ++GAC CPS++ TLK + L V P++ + V Sbjct: 240 DGGDVDLFDVDGDLVKVILKGACDSCPSSTATLKMAIEARLRDRVSPDLT-VIAV 293 >gi|289668991|ref|ZP_06490066.1| hypothetical protein XcampmN_10969 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 200 Score = 90.6 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVAR-DGGDIVFKGYR-DGIVFLSMRGACSGCPSA 164 G+ +++V+R++ V++N + P +A GG + + DG+V L G C GC A Sbjct: 99 KGEAPAESASMVERVRWVVENEINPQLASSHGGRVAVQEVSADGVVLLRFGGGCHGCGMA 158 Query: 165 SETLKYGVANILNHFVPEVKDIRT 188 TLK G+ L VP V +R Sbjct: 159 DVTLKQGIEKTLMGRVPGVIAVRD 182 >gi|50084252|ref|YP_045762.1| putative membrane-bound protein in GNT I transport system (GntY) [Acinetobacter sp. ADP1] gi|51701945|sp|Q6FDB8|NFUA_ACIAD RecName: Full=Fe/S biogenesis protein nfuA gi|49530228|emb|CAG67940.1| putative membrane-bound protein in GNT I transport system (GntY) [Acinetobacter sp. ADP1] Length = 212 Score = 90.6 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 65/188 (34%), Gaps = 18/188 (9%) Query: 17 IPGQVVLVEGAIHFSNAKEAEISP-LASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLR 74 IP ++ + + E + +P + RIF PG + D+ + + Sbjct: 14 IPNLLITPSAQEYLGDLLEKQNTPGIGVRIFVENPGTPRAECCMAYSAP--DEVNPADYK 71 Query: 75 PPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIES---------DSAVVQRIKEVL 125 P + + + K G F D+++ +RI +L Sbjct: 72 QEYSDFPAYIDAPSIPYLLDAVIDYNKDRFGGQLTFRAPNSKVPRVGPDASIEERITYIL 131 Query: 126 DNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETLKYGVANILNHFV 180 + + P +A GG+ +D L G C GC + TLK GV L + Sbjct: 132 QSEINPGLAGHGGNCALVEVQDDPENGLTAVLKFGGGCQGCSAIDVTLKQGVETTLRQQI 191 Query: 181 PEVKDIRT 188 PE++ + Sbjct: 192 PELQRVVD 199 >gi|126641029|ref|YP_001084013.1| putative membrane-bound protein in GNT I transport system (GntY) [Acinetobacter baumannii ATCC 17978] Length = 156 Score = 90.6 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D+++ +RI VL + P +A GG+ +D L G C GC + TL Sbjct: 64 DASIEERITYVLQAEINPGLAGHGGNCSLVEVQDDPEHGLTAVLKFGGGCQGCSAIDVTL 123 Query: 169 KYGVANILNHFVPEVKDIRT 188 K GV L +PE++ + Sbjct: 124 KQGVETTLKEHIPELQRVVD 143 >gi|332292115|ref|YP_004430724.1| nitrogen-fixing NifU domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332170201|gb|AEE19456.1| nitrogen-fixing NifU domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 80 Score = 90.6 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 2/76 (2%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLKYGVA 173 + + Q++++ L+ +RP + DGGDI G + IV + ++GAC GC TLK GV Sbjct: 4 AELTQKVEDALEE-IRPFLQSDGGDITLLGIENDTIVRVQLQGACVGCSVNQMTLKSGVE 62 Query: 174 NILNHFVPEVKDIRTV 189 + P+++++ V Sbjct: 63 MTIKKHAPQIEEVINV 78 >gi|18411785|ref|NP_567219.1| NFU1; structural molecule [Arabidopsis thaliana] gi|75163233|sp|Q93W77|NIFU1_ARATH RecName: Full=NifU-like protein 1, chloroplastic; Short=AtCNfu1; Short=AtCnfU-IVb; Flags: Precursor gi|14517434|gb|AAK62607.1| AT4g01940/T7B11_20 [Arabidopsis thaliana] gi|15215670|gb|AAK91380.1| AT4g01940/T7B11_20 [Arabidopsis thaliana] gi|20908090|gb|AAM26728.1| AT4g01940/T7B11_20 [Arabidopsis thaliana] gi|28207816|emb|CAD55558.1| NFU1 protein [Arabidopsis thaliana] gi|332656703|gb|AEE82103.1| NifU-like protein 1 [Arabidopsis thaliana] Length = 231 Score = 90.6 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 2/76 (2%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 Q + VL++ VRP + DGG++ DG+V L ++GAC+ CPS+S T+ G+ Sbjct: 84 DLTPQNVDLVLED-VRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIER 142 Query: 175 ILNHFVPE-VKDIRTV 189 +L + +KDIR V Sbjct: 143 VLKEKFGDALKDIRQV 158 >gi|257459224|ref|ZP_05624343.1| NifU family protein [Campylobacter gracilis RM3268] gi|257443609|gb|EEV18733.1| NifU family protein [Campylobacter gracilis RM3268] Length = 88 Score = 90.2 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 +D ++ +++ L+ +RP + DGGD+ G ++G+V++ + G C GC ++S+TL Sbjct: 1 MIPFTDEELLAPVQDSLE-LIRPMLQNDGGDMKLLGIKNGVVYVRLTGHCHGCAASSQTL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 KYGV L + PE+ + Sbjct: 60 KYGVERQLRMDIHPELSVV 78 >gi|224437749|ref|ZP_03658696.1| hypothetical protein HcinC1_07235 [Helicobacter cinaedi CCUG 18818] gi|313144195|ref|ZP_07806388.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313129226|gb|EFR46843.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 86 Score = 90.2 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 F SD + ++ V+D +VRP + DGGDI G RD V++ + GAC GCPS++ TL Sbjct: 1 MFPFSDEELQTPVELVID-KVRPTLTLDGGDITLLGIRDAKVYVRLEGACKGCPSSANTL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 KY + N L + P++ + Sbjct: 60 KYAIENRLKEEIHPDIAIV 78 >gi|242041121|ref|XP_002467955.1| hypothetical protein SORBIDRAFT_01g037130 [Sorghum bicolor] gi|241921809|gb|EER94953.1| hypothetical protein SORBIDRAFT_01g037130 [Sorghum bicolor] Length = 222 Score = 90.2 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + + + VLD+ VRP + DGG++ DG++ L + GAC CPS++ T+ G+ Sbjct: 71 TYELTPENVDRVLDD-VRPYLISDGGNVTVVAVEDGVISLKLEGACGSCPSSTTTMNMGI 129 Query: 173 ANILNHFVPE-VKDIRTV 189 +L + K+IR V Sbjct: 130 ERVLKEKFGDAFKEIRQV 147 >gi|152993863|ref|YP_001359584.1| hypothetical protein SUN_2287 [Sulfurovum sp. NBC37-1] gi|151425724|dbj|BAF73227.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 92 Score = 90.2 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 3/82 (3%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 +D + +K+V++ +VRP++ DGGDI +DG+V++ ++GAC GC SA T+ Sbjct: 1 MIPFTDEELEPAVKDVIE-KVRPSIKLDGGDIELVDIKDGVVYVQLQGACVGCGSAGTTI 59 Query: 169 KYGVANILNHFV-PEVKDIRTV 189 K+GV L + PE+ + +V Sbjct: 60 KFGVERQLKTLIHPEIT-VMSV 80 >gi|255526287|ref|ZP_05393203.1| nitrogen-fixing NifU domain protein [Clostridium carboxidivorans P7] gi|296185211|ref|ZP_06853621.1| NifU-like domain protein [Clostridium carboxidivorans P7] gi|255510000|gb|EET86324.1| nitrogen-fixing NifU domain protein [Clostridium carboxidivorans P7] gi|296050045|gb|EFG89469.1| NifU-like domain protein [Clostridium carboxidivorans P7] Length = 96 Score = 90.2 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 43/73 (58%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++I++V++ +V+P + GDI F +GIV + + G CSGC SA T++ V + Sbjct: 2 IEEKIQKVIEEKVKPYLREHNGDIKFLEIENGIVKVKLLGQCSGCVSAKYTVENIVEAAM 61 Query: 177 NHFVPEVKDIRTV 189 +PEV+ + + Sbjct: 62 KEEIPEVERVELI 74 >gi|169796823|ref|YP_001714616.1| putative membrane-bound protein in GNT I transport system (GntY) [Acinetobacter baumannii AYE] gi|184157261|ref|YP_001845600.1| thioredoxin-like protein [Acinetobacter baumannii ACICU] gi|213156785|ref|YP_002318446.1| IscR-regulated protein YhgI [Acinetobacter baumannii AB0057] gi|215484301|ref|YP_002326528.1| Iron-sulphur cluster biosynthesis family protein [Acinetobacter baumannii AB307-0294] gi|239502990|ref|ZP_04662300.1| Iron-sulphur cluster biosynthesis family protein [Acinetobacter baumannii AB900] gi|260555913|ref|ZP_05828133.1| iron-sulphur cluster biosynthesis family protein [Acinetobacter baumannii ATCC 19606] gi|301346712|ref|ZP_07227453.1| Iron-sulphur cluster biosynthesis family protein [Acinetobacter baumannii AB056] gi|301511819|ref|ZP_07237056.1| Iron-sulphur cluster biosynthesis family protein [Acinetobacter baumannii AB058] gi|301594411|ref|ZP_07239419.1| Iron-sulphur cluster biosynthesis family protein [Acinetobacter baumannii AB059] gi|332853697|ref|ZP_08434927.1| IscR-regulated protein YhgI [Acinetobacter baumannii 6013150] gi|332870876|ref|ZP_08439521.1| IscR-regulated protein YhgI [Acinetobacter baumannii 6013113] gi|332872882|ref|ZP_08440846.1| IscR-regulated protein YhgI [Acinetobacter baumannii 6014059] gi|254767282|sp|B7GXX8|NFUA_ACIB3 RecName: Full=Fe/S biogenesis protein nfuA gi|254767283|sp|B7I8Q3|NFUA_ACIB5 RecName: Full=Fe/S biogenesis protein nfuA gi|254767284|sp|B2HVD2|NFUA_ACIBC RecName: Full=Fe/S biogenesis protein nfuA gi|254767286|sp|B0V9L0|NFUA_ACIBY RecName: Full=Fe/S biogenesis protein nfuA gi|254767504|sp|A3M3B7|NFUA_ACIBT RecName: Full=Fe/S biogenesis protein nfuA gi|169149750|emb|CAM87641.1| putative membrane-bound protein in GNT I transport system (GntY) [Acinetobacter baumannii AYE] gi|183208855|gb|ACC56253.1| Thioredoxin-like protein [Acinetobacter baumannii ACICU] gi|193076708|gb|ABO11411.2| putative membrane-bound protein in GNT I transport system (GntY) [Acinetobacter baumannii ATCC 17978] gi|213055945|gb|ACJ40847.1| IscR-regulated protein YhgI [Acinetobacter baumannii AB0057] gi|213988281|gb|ACJ58580.1| Iron-sulphur cluster biosynthesis family protein [Acinetobacter baumannii AB307-0294] gi|260410824|gb|EEX04122.1| iron-sulphur cluster biosynthesis family protein [Acinetobacter baumannii ATCC 19606] gi|322507146|gb|ADX02600.1| thioredoxin-like protein [Acinetobacter baumannii 1656-2] gi|323517125|gb|ADX91506.1| thioredoxin-like protein [Acinetobacter baumannii TCDC-AB0715] gi|332728521|gb|EGJ59895.1| IscR-regulated protein YhgI [Acinetobacter baumannii 6013150] gi|332731977|gb|EGJ63255.1| IscR-regulated protein YhgI [Acinetobacter baumannii 6013113] gi|332738893|gb|EGJ69756.1| IscR-regulated protein YhgI [Acinetobacter baumannii 6014059] Length = 212 Score = 90.2 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D+++ +RI VL + P +A GG+ +D L G C GC + TL Sbjct: 120 DASIEERITYVLQAEINPGLAGHGGNCSLVEVQDDPEHGLTAVLKFGGGCQGCSAIDVTL 179 Query: 169 KYGVANILNHFVPEVKDIRT 188 K GV L +PE++ + Sbjct: 180 KQGVETTLKEHIPELQRVVD 199 >gi|308807973|ref|XP_003081297.1| nitrogen fixation NifU-like family protein (ISS) [Ostreococcus tauri] gi|116059759|emb|CAL55466.1| nitrogen fixation NifU-like family protein (ISS) [Ostreococcus tauri] Length = 186 Score = 90.2 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 6/99 (6%) Query: 92 IHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVF 151 G + +D + S D + ++ + LD VRP + DGG++ DG++ Sbjct: 15 FATARAGAVAMDAVESAD-APTLELTMENVDAALDE-VRPYLIADGGNVELVTIDDGMIV 72 Query: 152 LSMRGACSGCPSASETLKYGVANILNHF----VPEVKDI 186 + + GAC C S++ T+K G+ +L V EV ++ Sbjct: 73 VRLNGACGTCASSTATMKGGIEKLLKQKFGAAVDEVVNV 111 >gi|268323348|emb|CBH36936.1| conserved hypothetical protein, NifU-like domain family [uncultured archaeon] Length = 87 Score = 90.2 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANI 175 +++ +K V++ +RP + +GG I KG D G+V + + GAC+GCP + TL V Sbjct: 1 MLEEVKGVIEKDIRPLLEMEGGSIELKGVDDDGVVRVQLTGACAGCPMSQYTLVNFVEAT 60 Query: 176 LNHFVPEVKDIRT 188 L VP VK + Sbjct: 61 LKDKVPGVKQVVA 73 >gi|326336739|ref|ZP_08202907.1| NifU family protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691209|gb|EGD33180.1| NifU family protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 80 Score = 90.2 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLKYG 171 ++ +++R++ L +RP + DGGDI G D IV + + G+C C TL+ G Sbjct: 2 NNPDLLKRVETALAE-IRPYLQNDGGDISLVGIEDNKIVKVHLLGSCLNCSVNQMTLRSG 60 Query: 172 VANILNHFVPEVKDIRTV 189 V ++ + PE++ + +V Sbjct: 61 VEMMIKKYAPEIEKVISV 78 >gi|186680943|ref|YP_001864139.1| Fe-S cluster assembly protein NifU [Nostoc punctiforme PCC 73102] gi|186463395|gb|ACC79196.1| Fe-S cluster assembly protein NifU [Nostoc punctiforme PCC 73102] Length = 299 Score = 90.2 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 4/113 (3%) Query: 77 VLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARD 136 + + E+ P ++N G+ + + + S + ++ + I++VLD VRP + D Sbjct: 191 IRSVQQEYAS---PALNNYGV-QVATEIVTSKERSLTNVQKIALIQKVLDEEVRPVLIAD 246 Query: 137 GGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 GGD+ V + ++GAC C S++ TLK + L V + + V Sbjct: 247 GGDVELYDVEGDRVKVVLQGACGSCSSSTATLKIAIEARLQDRVSKSLVVEAV 299 >gi|260551205|ref|ZP_05825408.1| iron-sulphur cluster biosynthesis family protein [Acinetobacter sp. RUH2624] gi|260405810|gb|EEW99299.1| iron-sulphur cluster biosynthesis family protein [Acinetobacter sp. RUH2624] Length = 212 Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D+++ +RI VL + P +A GG+ +D L G C GC + TL Sbjct: 120 DASIEERITYVLQAEINPGLAGHGGNCSLVEVQDDPEHGLTAVLKFGGGCQGCSAIDVTL 179 Query: 169 KYGVANILNHFVPEVKDIRT 188 K GV L +PE++ + Sbjct: 180 KQGVETTLREHIPELQRVVD 199 >gi|303233008|ref|ZP_07319687.1| NifU-like protein [Atopobium vaginae PB189-T1-4] gi|302480879|gb|EFL43960.1| NifU-like protein [Atopobium vaginae PB189-T1-4] Length = 178 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 5/107 (4%) Query: 83 EHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVF 142 + + +PI + G+ + + + I E + +R ++ DGGD+V Sbjct: 72 DPAQATNPIDAAASCATSGDNATTPGERV----PINREILEATIDVIRESLQADGGDVVL 127 Query: 143 KGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 DG+V L M GAC+GCP + + G+ IL VP V + Sbjct: 128 VNVSDDGVVTLEMTGACAGCPLSEYDMTEGIERILKEHVPGVTKVEP 174 >gi|262279919|ref|ZP_06057704.1| IscR-regulated protein YhgI [Acinetobacter calcoaceticus RUH2202] gi|262260270|gb|EEY79003.1| IscR-regulated protein YhgI [Acinetobacter calcoaceticus RUH2202] Length = 212 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D+++ +RI +L + P +A GG+ +D L G C GC + TL Sbjct: 120 DASIEERITYILQAEINPGLAGHGGNCSLVEVQDNPEHGLTAVLKFGGGCQGCSAIDVTL 179 Query: 169 KYGVANILNHFVPEVKDIRT 188 K GV L +PE++ + Sbjct: 180 KQGVETTLREHIPELQRVVD 199 >gi|269928406|ref|YP_003320727.1| nitrogen-fixing NifU domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269787763|gb|ACZ39905.1| nitrogen-fixing NifU domain protein [Sphaerobacter thermophilus DSM 20745] Length = 290 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 14/131 (10%) Query: 72 HLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESD-------------SAVV 118 LR LG I E + + D E + V Sbjct: 30 ELRDQALGAIQELLAFYGDGLGRALAILVARDPTLPAALAEDELVAHILLLHGLHPVPVE 89 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +R+ + LD RVRP + GGD+ DG+ + +RG C GCP+++ TL+ + ++ Sbjct: 90 ERVGQALD-RVRPYLHSHGGDVDLLEIVDGVARVRLRGTCRGCPASAVTLRLAIERAVHE 148 Query: 179 FVPEVKDIRTV 189 P++ I V Sbjct: 149 LAPDLDGIEAV 159 >gi|417363|sp|P33179|NIFU_ANASL RecName: Full=Nitrogen fixation protein nifU gi|2126543|pir||I39609 nifU protein - Anabaena sp. (fragment) gi|142056|gb|AAA22013.1| NifU [Anabaena sp. L-31] Length = 112 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 3/113 (2%) Query: 79 GMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE-SDSAVVQRIKEVLDNRVRPAVARDG 137 +I + N ++ + SG ++ + I++VLD VRP + DG Sbjct: 1 DIIKDVKEKNAVTNLNTKGVNLTKEIANSGQKRALTNVQKIALIQKVLDEEVRPVLIADG 60 Query: 138 GDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV-PEVKDIRTV 189 GD+ IV + ++GAC CPS++ TLK + + L + P + + V Sbjct: 61 GDVELYDVDGDIVKVVLQGACGSCPSSTATLKIAIESRLRDRINPSLV-VEAV 112 >gi|224419202|ref|ZP_03657208.1| hypothetical protein HcanM9_08008 [Helicobacter canadensis MIT 98-5491] gi|253828131|ref|ZP_04871016.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313142706|ref|ZP_07804899.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|253511537|gb|EES90196.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131737|gb|EFR49354.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 81 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 50/73 (68%), Gaps = 2/73 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD +++ ++ V+D +VRP + DGG++ +G V++ + GAC GCPS+S+TLK+G+ Sbjct: 5 SDQKLLKPVEIVID-KVRPMLINDGGNVTLLKIENGKVYVRLEGACKGCPSSSKTLKFGI 63 Query: 173 ANILNHFV-PEVK 184 + L + + P+++ Sbjct: 64 ESALKNEIHPDIE 76 >gi|312880024|ref|ZP_07739824.1| nitrogen-fixing NifU domain protein [Aminomonas paucivorans DSM 12260] gi|310783315|gb|EFQ23713.1| nitrogen-fixing NifU domain protein [Aminomonas paucivorans DSM 12260] Length = 76 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 2/73 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVAN 174 + QR+ +V+ ++RP + GGDI FKG+ + G V +++ GAC GCP A ETL+ V Sbjct: 1 MEQRVLQVIQEQIRPNLQAHGGDIEFKGFDEVEGAVTVALTGACGGCPFAQETLRVQVEQ 60 Query: 175 ILNHFVPEVKDIR 187 +L +PEVK +R Sbjct: 61 VLRAAIPEVKSVR 73 >gi|228473254|ref|ZP_04058008.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] gi|228275156|gb|EEK13954.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] Length = 79 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLKYG 171 ++ ++QR++ L +RP + DGGDI G D IV + + G+C C TLK G Sbjct: 2 NNPDLLQRVETALAE-IRPYLQNDGGDISLIGIEDDKIVKVKLLGSCLSCSVNQMTLKSG 60 Query: 172 VANILNHFVPEVKDIRTV 189 V + + PE++ + + Sbjct: 61 VEMTIKKYAPEIEKVVNI 78 >gi|87121388|ref|ZP_01077277.1| yhgI protein [Marinomonas sp. MED121] gi|86163231|gb|EAQ64507.1| yhgI protein [Marinomonas sp. MED121] Length = 193 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLKYG 171 DS + +I VL + + P +A GG++ ++G I L G C GC + TLK G Sbjct: 105 EDSPLEDQINYVLYSDINPGLASHGGEVSLVEIKEGNIAVLQFGGGCQGCSAVDLTLKEG 164 Query: 172 VANILNHFVPEVKDIRT 188 V L VP +K ++ Sbjct: 165 VEKTLIEKVPALKGVQD 181 >gi|298490557|ref|YP_003720734.1| Fe-S cluster assembly protein NifU ['Nostoc azollae' 0708] gi|298232475|gb|ADI63611.1| Fe-S cluster assembly protein NifU ['Nostoc azollae' 0708] Length = 306 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 37/72 (51%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V I++VLD VRP + DGGD+ V + ++GAC C S++ TLK + + L Sbjct: 233 VALIQKVLDEEVRPVLIADGGDVELYDVEGDKVKVVLQGACGSCSSSTATLKIAIESRLR 292 Query: 178 HFVPEVKDIRTV 189 + + + V Sbjct: 293 DRISKEIIVEAV 304 >gi|57238650|ref|YP_179781.1| NifU family protein [Campylobacter jejuni RM1221] gi|121612278|ref|YP_001001282.1| NifU family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|148925779|ref|ZP_01809467.1| nifU protein like protein [Campylobacter jejuni subsp. jejuni CG8486] gi|153951478|ref|YP_001398916.1| NifU family protein [Campylobacter jejuni subsp. doylei 269.97] gi|167006176|ref|ZP_02271934.1| NifU family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|218563228|ref|YP_002345008.1| NifU protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283957025|ref|ZP_06374497.1| NifU family protein [Campylobacter jejuni subsp. jejuni 1336] gi|2960001|emb|CAA76497.1| hypothetical protein [Campylobacter jejuni] gi|57167454|gb|AAW36233.1| NifU family protein [Campylobacter jejuni RM1221] gi|112360935|emb|CAL35736.1| NifU protein homolog [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|121504156|gb|EAQ72687.2| NifU family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|145845789|gb|EDK22880.1| nifU protein like protein [Campylobacter jejuni subsp. jejuni CG8486] gi|152938924|gb|ABS43665.1| NifU family protein [Campylobacter jejuni subsp. doylei 269.97] gi|283791526|gb|EFC30323.1| NifU family protein [Campylobacter jejuni subsp. jejuni 1336] gi|284926833|gb|ADC29185.1| NifU family protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315059089|gb|ADT73418.1| NifU-like protein [Campylobacter jejuni subsp. jejuni S3] gi|315927611|gb|EFV06942.1| nifU-like domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 90 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD ++ +K L+ + P + RDGG + F G ++GIV++ + GAC GC S+ TL Sbjct: 1 MMPFSDEELINPVKASLEKSL-PMLERDGGGLEFLGIKNGIVYVHLIGACKGCASSGTTL 59 Query: 169 KYGVANILNHFV-PEVK 184 KYG+ L + PE+ Sbjct: 60 KYGLERQLKIDIHPEIT 76 >gi|332970567|gb|EGK09554.1| Fe/S-biogenesis protein NfuA [Psychrobacter sp. 1501(2011)] Length = 216 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 14/136 (10%) Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE---------SDSAV 117 + D L+ P S P + + + K G F +D++V Sbjct: 68 EEDEADLQLPFEAFTAYIEASSVPYLEDAVIDYNKDRFGGQLTFRAPNSKVPKVGADASV 127 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGI---VFLSMRGACSGCPSASETLKYGV 172 +RI VL + + P++A GGD+ +G+ L G C GC + TL+ GV Sbjct: 128 EERINYVLQSEINPSLAAHGGDVQLLELIEEEGVGLTAVLKFGGGCQGCSAVDMTLRQGV 187 Query: 173 ANILNHFVPEVKDIRT 188 L +PE+ + Sbjct: 188 EVQLKQQIPELTQVVD 203 >gi|94676599|ref|YP_588921.1| yhgI protein [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|254767291|sp|Q1LSZ3|NFUA_BAUCH RecName: Full=Fe/S biogenesis protein nfuA gi|94219749|gb|ABF13908.1| yhgI protein [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 190 Score = 89.5 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 64/171 (37%), Gaps = 18/171 (10%) Query: 31 SNAKEAEISPLASRIFSI-PGIASVYFGYDFI---TVGKDQYDWEHLRPPV--LGMIMEH 84 + + S R+ + PG + TV K + ++ + ++ Sbjct: 13 TTLLAKQKSGTQIRVLVLNPGTPIAECSLSYCPIDTVTK-----KDIKLEFDQFCVYVDQ 67 Query: 85 FISG------DPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGG 138 + + + + + + I+S++ +++R+ +++ + + P +A GG Sbjct: 68 LSTSYLEDALIDCVLDELGTQLIIQAPHLIEKIDSNTPLLERVNQIILSCINPQLANHGG 127 Query: 139 DIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 + D + G C+GC S TLK + L PE+K ++ Sbjct: 128 KVTLITITEDMFAIIQFSGGCNGCSMVSYTLKEHIEKKLLQLFPELKGVKD 178 >gi|86149351|ref|ZP_01067582.1| NifU family protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|86152315|ref|ZP_01070526.1| NifU family protein [Campylobacter jejuni subsp. jejuni 260.94] gi|86152773|ref|ZP_01070978.1| NifU family protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|88596032|ref|ZP_01099269.1| NifU family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|85840133|gb|EAQ57391.1| NifU family protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840804|gb|EAQ58055.1| NifU family protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85843658|gb|EAQ60868.1| NifU family protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|88190873|gb|EAQ94845.1| NifU family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|315928875|gb|EFV08137.1| nifU-like domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 89 Score = 89.5 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 2/73 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD ++ +K L+ + P + RDGG + F G ++GIV++ + GAC GC S+ TLKYG+ Sbjct: 4 SDEELINPVKASLEKSL-PMLERDGGGLEFLGIKNGIVYVHLIGACKGCASSGTTLKYGL 62 Query: 173 ANILNHFV-PEVK 184 L + PE+ Sbjct: 63 ERQLKIDIHPEIT 75 >gi|241890053|ref|ZP_04777351.1| Fe/S biogenesis protein NfuA [Gemella haemolysans ATCC 10379] gi|241863675|gb|EER68059.1| Fe/S biogenesis protein NfuA [Gemella haemolysans ATCC 10379] Length = 84 Score = 89.5 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 V++IK L+ ++RP + DGG+I F Y+DGI+ + G C+ C + TLKY + Sbjct: 7 ETVEKIKFELE-KIRPKLIMDGGNIEFINYKDGILKVRFLGECAHCELSHITLKYAIEKT 65 Query: 176 LNHFVPEVKDIRTV 189 L +PE+K + V Sbjct: 66 LIEKIPEIKKVLQV 79 >gi|282901488|ref|ZP_06309413.1| Fe-S cluster assembly protein NifU [Cylindrospermopsis raciborskii CS-505] gi|281193767|gb|EFA68739.1| Fe-S cluster assembly protein NifU [Cylindrospermopsis raciborskii CS-505] Length = 308 Score = 89.5 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 39/77 (50%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ + I++VLD VRP + DGGD+ V + ++GAC C S++ TLK + Sbjct: 232 TNVQKIALIQKVLDEEVRPVLIADGGDVELYDIEGNKVKVILKGACGSCSSSTATLKIAI 291 Query: 173 ANILNHFVPEVKDIRTV 189 + L V + + V Sbjct: 292 ESRLRERVNKEIIVEAV 308 >gi|157415859|ref|YP_001483115.1| NifU family protein [Campylobacter jejuni subsp. jejuni 81116] gi|157386823|gb|ABV53138.1| NifU-like protein [Campylobacter jejuni subsp. jejuni 81116] gi|307748496|gb|ADN91766.1| NifU family protein [Campylobacter jejuni subsp. jejuni M1] gi|315931685|gb|EFV10646.1| nifU-like domain protein [Campylobacter jejuni subsp. jejuni 327] Length = 90 Score = 89.5 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD ++ +K L+ + P + RDGG + F G ++G+V++ + GAC GC S+ TL Sbjct: 1 MMPFSDEELINPVKASLEKSL-PMLERDGGGLEFLGIKNGVVYVHLIGACKGCASSGTTL 59 Query: 169 KYGVANILNHFV-PEVK 184 KYG+ L + PE+ Sbjct: 60 KYGLERQLKIDIHPEIT 76 >gi|255069975|ref|XP_002507069.1| iron-sulfur cluster scaffold protein, plastid precursor [Micromonas sp. RCC299] gi|226522344|gb|ACO68327.1| iron-sulfur cluster scaffold protein, plastid precursor [Micromonas sp. RCC299] Length = 393 Score = 89.5 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 6/79 (7%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 V+ + L N VRP +A DGGD+ G DGIV + M GAC C S++ TLK G+ Sbjct: 239 ELTVENVDAAL-NEVRPFLAADGGDVEVVGIEDGIVAVRMFGACGTCSSSTATLKGGIEA 297 Query: 175 IL-----NHFVPEVKDIRT 188 L + EV ++ Sbjct: 298 TLFKVFGREAIKEVVNLDQ 316 >gi|330837803|ref|YP_004412444.1| nitrogen-fixing NifU domain-containing protein [Spirochaeta coccoides DSM 17374] gi|329749706|gb|AEC03062.1| nitrogen-fixing NifU domain-containing protein [Spirochaeta coccoides DSM 17374] Length = 78 Score = 89.5 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++IKE ++ +RPA+ DGGDI F D V + + GAC+GCP A TLK GV L Sbjct: 1 MQEQIKEAIE-AIRPAIQNDGGDIEFVQLDDNKVIVRLTGACAGCPMAKMTLKGGVERYL 59 Query: 177 NHFV-PEVKDI 186 +H V P++ + Sbjct: 60 HHAVSPDLVIV 70 >gi|152996366|ref|YP_001341201.1| HesB/YadR/YfhF-family protein [Marinomonas sp. MWYL1] gi|150837290|gb|ABR71266.1| HesB/YadR/YfhF-family protein [Marinomonas sp. MWYL1] Length = 193 Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIV-FLSMRGACSGCPSASETLKYG 171 +DS + +I VL + + P +A GG++ DG V L G C GC + TLK G Sbjct: 105 ADSPIEDQINYVLYSDINPGLAAHGGEVSLLEVIDGKVAVLKFGGGCQGCSAVDLTLKEG 164 Query: 172 VANILNHFVPEVKDIRT 188 V L VP + ++ Sbjct: 165 VEKTLMEKVPGLTAVKD 181 >gi|113476874|ref|YP_722935.1| nitrogen-fixing NifU-like protein [Trichodesmium erythraeum IMS101] gi|110167922|gb|ABG52462.1| nitrogen-fixing NifU-like [Trichodesmium erythraeum IMS101] Length = 173 Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 3/118 (2%) Query: 74 RPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ-RIKEVLDNRVRPA 132 + + +I P + ++ + + ++ + ++ RI++ LD VRP Sbjct: 51 KEALTRLIRSVKKESMPALREAVQDEVVYGLLRYHELVKPPTPPLEIRIQQALDE-VRPG 109 Query: 133 VARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 + GD+ G + V + + G CS CP+++ T+K GV + PE+K++ +V Sbjct: 110 LQSHNGDVELVGIKLPDTVEVKLVGNCSNCPASTLTMKDGVEQAIKTHCPEIKNVVSV 167 >gi|323343211|ref|ZP_08083442.1| Fe/S-biogenesis protein NfuA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463275|gb|EFY08470.1| Fe/S-biogenesis protein NfuA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 79 Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + +RI E LD ++RP + RDGGD+ F +G+V + + GAC GC TLK GV + Sbjct: 3 LEERIIESLD-KIRPYIQRDGGDMEFVSVDENGVVTVKLLGACIGCGLIDYTLKGGVEAL 61 Query: 176 LNHFVPEVKDIRT 188 L +PEV + Sbjct: 62 LMDEIPEVTGVIA 74 >gi|222526228|ref|YP_002570699.1| Rieske (2Fe-2S) domain-containing protein [Chloroflexus sp. Y-400-fl] gi|222450107|gb|ACM54373.1| Rieske (2Fe-2S) domain protein [Chloroflexus sp. Y-400-fl] Length = 285 Score = 89.1 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + + R + VLD+ RP + GGD RDG+ +L + G+C+GC ++ TL+ V Sbjct: 89 ADPITRARRVLDS-ARPYMQSHGGDAELIDVRDGVAYLRLHGSCNGCSLSAFTLRKHVEE 147 Query: 175 ILNHFVPEVKDIRTV 189 +L VPE+ + V Sbjct: 148 VLLREVPEITRLEVV 162 >gi|119509287|ref|ZP_01628437.1| nitrogen fixation protein [Nodularia spumigena CCY9414] gi|119466129|gb|EAW47016.1| nitrogen fixation protein [Nodularia spumigena CCY9414] Length = 312 Score = 89.1 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 5/114 (4%) Query: 77 VLGMIMEHFISGD-PIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVAR 135 + +I + P ++ + ++ + I++VLD VRP + Sbjct: 201 IDDIIRDVKEKAAVPALNTHSVAVANSQQSKPL----TNVQRIALIQKVLDEEVRPVLIA 256 Query: 136 DGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 DGGD+ V + ++GAC C S++ TLK + L V + + V Sbjct: 257 DGGDVELYDVEGDKVKVVLQGACGSCSSSTATLKIAIEARLQDRVSKNLVVEAV 310 >gi|163848313|ref|YP_001636357.1| Rieske (2Fe-2S) domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|163669602|gb|ABY35968.1| Rieske (2Fe-2S) domain protein [Chloroflexus aurantiacus J-10-fl] Length = 293 Score = 89.1 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + + R + VLD+ RP + GGD RDG+ +L + G+C+GC ++ TL+ V Sbjct: 97 ADPITRARRVLDS-ARPYMQSHGGDAELIDVRDGVAYLRLHGSCNGCSLSAFTLRKHVEE 155 Query: 175 ILNHFVPEVKDIRTV 189 +L VPE+ + V Sbjct: 156 VLLREVPEITRLEVV 170 >gi|315453542|ref|YP_004073812.1| nifU protein-like protein [Helicobacter felis ATCC 49179] gi|315132594|emb|CBY83222.1| nifU protein homolog [Helicobacter felis ATCC 49179] Length = 89 Score = 89.1 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 50/75 (66%), Gaps = 2/75 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD + + +++ L+ +VRP + RDGGD+V G ++ V++S+ GAC GC S++ TLK+G+ Sbjct: 4 SDQELQKPVEKALE-KVRPMLLRDGGDVVLLGIKNAKVYVSLEGACKGCASSANTLKFGI 62 Query: 173 ANILNHFV-PEVKDI 186 L + P+++ + Sbjct: 63 ERCLQEEIHPDMQVV 77 >gi|323483740|ref|ZP_08089120.1| nitrogen-fixing NifU domain-containing protein [Clostridium symbiosum WAL-14163] gi|323692707|ref|ZP_08106936.1| nitrogen-fixing NifU domain-containing protein [Clostridium symbiosum WAL-14673] gi|323402931|gb|EGA95249.1| nitrogen-fixing NifU domain-containing protein [Clostridium symbiosum WAL-14163] gi|323503261|gb|EGB19094.1| nitrogen-fixing NifU domain-containing protein [Clostridium symbiosum WAL-14673] Length = 118 Score = 89.1 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG--IVFLSMRGACSGCPSASETLKYGV 172 + +++RI++VL+ VRP++ G++ Y + I+ + + G CSGCPSA T + + Sbjct: 2 AEMIERIEKVLEQDVRPSLLSHEGNVQIVSYEEKSKILRVRLTGQCSGCPSAQLTTEEVI 61 Query: 173 ANILNHFVPEVKDIRTV 189 + +PEV+ + V Sbjct: 62 EKAVKEKIPEVEQVLLV 78 >gi|268326215|emb|CBH39803.1| conserved hypothetical protein, containing NifU-like domain [uncultured archaeon] Length = 87 Score = 89.1 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANI 175 +++ ++ V++ +RP + GG I +G D G+V + + GAC+GCP + TL V Sbjct: 1 MLEEVEGVIEKDIRPLLEMQGGSIELEGVDDDGVVKVRLTGACAGCPMSQFTLVNFVEAT 60 Query: 176 LNHFVPEVKDIRT 188 L VP VK + Sbjct: 61 LKDKVPGVKQVVA 73 >gi|118602435|ref|YP_903650.1| NifU domain-containing protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|254767316|sp|A1AW72|NFUA_RUTMC RecName: Full=Fe/S biogenesis protein nfuA gi|118567374|gb|ABL02179.1| nitrogen-fixing NifU domain protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 192 Score = 89.1 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 3/110 (2%) Query: 83 EHFISGDPIIHNGGLGDMKLDDMGSGDFIE--SDSAVVQRIKEVLDNRVRPAVARDGGDI 140 E+ + + + G G + E D+ + ++IK V+ + P +A GG + Sbjct: 72 EYLKDSEVALKDAGTGKKLTITAPNTKGKEPKEDAPLEEKIKYVIAANINPGLASHGGFV 131 Query: 141 VFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 + V L+ G C GC S TL+ GV L PE+K +R V Sbjct: 132 ELVEITKHMDVILNFGGGCQGCSSVKSTLEQGVEAQLKMSFPEIKSVRDV 181 >gi|71066466|ref|YP_265193.1| hypothetical protein Psyc_1911 [Psychrobacter arcticus 273-4] gi|71039451|gb|AAZ19759.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 227 Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGI---VFLSMRGACSGCPSASET 167 +D++V +RI VL + + P++A GGD+ +GI L G C GC + T Sbjct: 134 ADASVEERINYVLQSEINPSLAAHGGDVQLLELIDEEGIGLTAVLKFGGGCQGCSAVDMT 193 Query: 168 LKYGVANILNHFVPEVKDIRT 188 L+ GV L +PE+ + Sbjct: 194 LRQGVEVQLKQQIPELTQVID 214 >gi|242277615|ref|YP_002989744.1| Fe-S cluster assembly protein NifU [Desulfovibrio salexigens DSM 2638] gi|242120509|gb|ACS78205.1| Fe-S cluster assembly protein NifU [Desulfovibrio salexigens DSM 2638] Length = 279 Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 3/102 (2%) Query: 89 DPIIHNGGLGDMKLDDMGSGDFIE-SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD 147 + II G+ + ++ Q + +V+D +RPA+ +DGGDI Sbjct: 178 EEIITEVLTGEAAKPAPEPEKPAKLTNIKRFQLVTKVIDEEIRPALNKDGGDIELIDIDG 237 Query: 148 GIVFLSMRGACSGCPSASETLKYGVANILNHFV-PEVKDIRT 188 V +S+RGAC GCPS+ TLK V L V PE+ +R Sbjct: 238 HEVIVSLRGACVGCPSSGRTLKDFVERRLKETVEPEI-SVRE 278 >gi|148653644|ref|YP_001280737.1| HesB/YadR/YfhF-family protein [Psychrobacter sp. PRwf-1] gi|148572728|gb|ABQ94787.1| HesB/YadR/YfhF-family protein [Psychrobacter sp. PRwf-1] Length = 216 Score = 88.7 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 14/136 (10%) Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE---------SDSAV 117 + D L+ P S P + + + K G F +D++V Sbjct: 68 EEDEADLQMPFEPFTAYIEASSVPYLEDAVIDYNKDRFGGQLTFRAPNSKVPKVGADASV 127 Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGI---VFLSMRGACSGCPSASETLKYGV 172 +RI VL + + P++A GGD+ +G+ L G C GC + TL+ GV Sbjct: 128 EERINYVLQSEINPSLAAHGGDVQLLELIEEEGVGLTAVLKFGGGCQGCSAVDMTLRQGV 187 Query: 173 ANILNHFVPEVKDIRT 188 L +PE+ + Sbjct: 188 EVQLKQQIPELTQVVD 203 >gi|32267366|ref|NP_861398.1| hypothetical protein HH1867 [Helicobacter hepaticus ATCC 51449] gi|32263419|gb|AAP78464.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 91 Score = 88.7 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 F SD + ++ V+ +VRP + DGGDI G +D V++ + GAC GCPS++ TL Sbjct: 1 MFPFSDEELKMPVEIVIQ-KVRPTLTLDGGDITLLGIKDAKVYVRLEGACKGCPSSANTL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 KY + N L + P++ + Sbjct: 60 KYAIENRLKEEIHPDIAIV 78 >gi|311747521|ref|ZP_07721306.1| NifU domain protein [Algoriphagus sp. PR1] gi|126574883|gb|EAZ79254.1| NifU domain protein [Algoriphagus sp. PR1] Length = 82 Score = 88.7 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLKYGVA 173 + + +I+ LD +RP + DGG++ D ++ + M G+C CP +S TLK GV Sbjct: 3 TELKNKIEFALDT-IRPYLEADGGNVRIVELTEDMVLRIEMLGSCGSCPMSSMTLKAGVE 61 Query: 174 NILNHFVPEVKDIRTV 189 + + +PE+ + + Sbjct: 62 DAIKRAIPEITKVEAI 77 >gi|322379101|ref|ZP_08053503.1| conserved hypothetical nifU-like protein [Helicobacter suis HS1] gi|322380564|ref|ZP_08054730.1| NifU-like protein [Helicobacter suis HS5] gi|321147026|gb|EFX41760.1| NifU-like protein [Helicobacter suis HS5] gi|321148473|gb|EFX42971.1| conserved hypothetical nifU-like protein [Helicobacter suis HS1] Length = 89 Score = 88.7 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 49/75 (65%), Gaps = 2/75 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 SD + + ++ L+ ++RP + RDGGD+V G ++ V++S+ GAC GC S++ TLK+G+ Sbjct: 4 SDQELQKPVQRALE-KIRPVLLRDGGDVVLLGIKEAKVYVSLEGACKGCSSSANTLKFGI 62 Query: 173 ANILNHFV-PEVKDI 186 L + P+++ + Sbjct: 63 ERCLQEEIHPDMEVV 77 >gi|222823154|ref|YP_002574727.1| NifU family protein [Campylobacter lari RM2100] gi|222538375|gb|ACM63476.1| conserved hypothetical protein, NifU family protein [Campylobacter lari RM2100] Length = 91 Score = 88.3 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 + SD +++ +K L + + DGG + F G ++G+V++ + GAC GCPS+ TL Sbjct: 2 NMPFSDEELIEPVKASLAKTMH-ILENDGGGLDFLGVKNGVVYVKLTGACHGCPSSGTTL 60 Query: 169 KYGVANILNHFV-PEVKDI 186 KYG+ L + P++ + Sbjct: 61 KYGLEKQLKIDIHPDITIV 79 >gi|299771122|ref|YP_003733148.1| Iron-sulfur cluster biosynthesis family protein [Acinetobacter sp. DR1] gi|298701210|gb|ADI91775.1| Iron-sulfur cluster biosynthesis family protein [Acinetobacter sp. DR1] Length = 212 Score = 88.3 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D+++ +RI +L + P +A GG+ +D L G C GC + TL Sbjct: 120 DASIEERITYILQAEINPGLAGHGGNCSLVEVQDDPEHGLTAVLKFGGGCQGCSAIDVTL 179 Query: 169 KYGVANILNHFVPEVKDIRT 188 K GV L +PE++ + Sbjct: 180 KQGVETTLKEQIPELQRVVD 199 >gi|283953743|ref|ZP_06371274.1| NifU family protein [Campylobacter jejuni subsp. jejuni 414] gi|283794784|gb|EFC33522.1| NifU family protein [Campylobacter jejuni subsp. jejuni 414] Length = 90 Score = 88.3 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD ++ +K L+ + P + RDGG + F G ++G+V++ + GAC GC S+ TL Sbjct: 1 MMPFSDEELINPVKASLEKSL-PMLERDGGGLEFLGIKNGVVYVHLIGACKGCTSSGITL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 KYG+ L + PE+ + Sbjct: 60 KYGLERQLKIDIHPEITIV 78 >gi|219847420|ref|YP_002461853.1| nitrogen-fixing NifU domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219541679|gb|ACL23417.1| nitrogen-fixing NifU domain protein [Chloroflexus aggregans DSM 9485] Length = 286 Score = 88.3 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + V R + VLDN RP + GGD RDG+ ++ + G+C+GC ++ TL+ V Sbjct: 90 ADPVTRARRVLDN-ARPYMQSHGGDAELVDVRDGVAYVRLHGSCNGCSLSAFTLRKHVEE 148 Query: 175 ILNHFVPEVKDIRTV 189 L VPE+ + V Sbjct: 149 ALLREVPEMTRLEVV 163 >gi|326795571|ref|YP_004313391.1| Fe/S biogenesis protein nfuA [Marinomonas mediterranea MMB-1] gi|326546335|gb|ADZ91555.1| Fe/S biogenesis protein nfuA [Marinomonas mediterranea MMB-1] Length = 193 Score = 88.3 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLKYGV 172 DS + +I VL + V P +A GG++ G+ L G C GC + TLK GV Sbjct: 106 DSPIEDQINYVLYSDVNPGLAAHGGEVKLVEVIEGGVAVLQFGGGCQGCSAVDLTLKEGV 165 Query: 173 ANILNHFVPEVKDIRT 188 L VP + ++ Sbjct: 166 EKTLIEKVPGLTAVKD 181 >gi|150015239|ref|YP_001307493.1| NifU domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149901704|gb|ABR32537.1| nitrogen-fixing NifU domain protein [Clostridium beijerinckii NCIMB 8052] Length = 73 Score = 88.3 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANI 175 + + I + LD ++RP + RDGGD+ DG+V + M+GAC CP A T+K + Sbjct: 1 MKELIMKSLD-KIRPMLQRDGGDVELVDVSNDGVVSVKMQGACGNCPGAMMTIKMIIEQK 59 Query: 176 LNHFVPEVKDIRTV 189 L VP V ++ V Sbjct: 60 LKEEVPGVTEVIGV 73 >gi|254410535|ref|ZP_05024314.1| Fe-S cluster assembly protein NifU [Microcoleus chthonoplastes PCC 7420] gi|196182741|gb|EDX77726.1| Fe-S cluster assembly protein NifU [Microcoleus chthonoplastes PCC 7420] Length = 315 Score = 88.3 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 68/202 (33%), Gaps = 35/202 (17%) Query: 19 GQVVLVEGAIHFS----NAKEAEISPLASRIFSIPGIASV----YFGYDFIT----VG-- 64 GQ L + +E + SPL F G++S + +T V Sbjct: 117 GQEALEAAISDYKGIPVRPEEEDESPLVCSCF---GVSSAKIKRLIRENHLTNAEEVTNY 173 Query: 65 -KDQ-------YDWEHLRPPVL---GMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIES 113 K + + L V + PI + Sbjct: 174 IKAGGGCGSCLAEIDDLVIEVTQEQETLNTAASLSAPIPQPAVATTTPSTSPVKEETSPP 233 Query: 114 DSAV-----VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 + + + I++VL+ +RP +A DGGD+ V + ++G+C GCPS TL Sbjct: 234 PATLTNLQKITLIQQVLETEIRPTLAYDGGDVELYDVEGDRVKVILKGSCDGCPSVMITL 293 Query: 169 KYGVANILNHFV-PEVKDIRTV 189 K + L V P + + V Sbjct: 294 KMAIEKRLQERVSPNLM-VEAV 314 >gi|293608910|ref|ZP_06691213.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829483|gb|EFF87845.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325121322|gb|ADY80845.1| putative membrane-bound protein in GNT I transport system (GntY) [Acinetobacter calcoaceticus PHEA-2] Length = 212 Score = 88.3 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D+++ +RI +L + P +A GG+ +D L G C GC + TL Sbjct: 120 DASIEERITYILQAEINPGLAGHGGNCSLVEVQDDPEHGLTAVLKFGGGCQGCSAIDVTL 179 Query: 169 KYGVANILNHFVPEVKDIRT 188 K GV L +PE++ + Sbjct: 180 KQGVETTLRENIPELQRVVD 199 >gi|304311311|ref|YP_003810909.1| hypothetical protein HDN1F_16740 [gamma proteobacterium HdN1] gi|301797044|emb|CBL45257.1| Conserved hypothetical protein [gamma proteobacterium HdN1] Length = 199 Score = 88.3 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKY 170 +S+V +RI ++ + + P +A GG + + D + L G+C GC TLK Sbjct: 110 ENSSVEERINHIIFSEINPQLASHGGSVELQQLIDDDTVAILKFGGSCQGCGMIDVTLKQ 169 Query: 171 GVANILNHFVPEVKDIRTV 189 GV L VPE+K + V Sbjct: 170 GVEKTLLDRVPELKRVTDV 188 >gi|298527898|ref|ZP_07015302.1| Fe-S cluster assembly protein NifU [Desulfonatronospira thiodismutans ASO3-1] gi|298511550|gb|EFI35452.1| Fe-S cluster assembly protein NifU [Desulfonatronospira thiodismutans ASO3-1] Length = 281 Score = 88.3 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 46/101 (45%) Query: 89 DPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG 148 + ++ + + S + ++ +Q + V+D +RP++ +DGGDI Sbjct: 179 EKLLDQVRSQTLTPVEPVSEERPMTNIKRMQLVTRVVDEEIRPSLHKDGGDIELVDIEGP 238 Query: 149 IVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 V +S RGAC+GCPS+ T K V L V + V Sbjct: 239 KVMVSFRGACAGCPSSHLTAKEVVEKKLKERVDSQIQVEEV 279 >gi|254480747|ref|ZP_05093994.1| IscR-regulated protein YhgI [marine gamma proteobacterium HTCC2148] gi|214039330|gb|EEB79990.1| IscR-regulated protein YhgI [marine gamma proteobacterium HTCC2148] Length = 191 Score = 88.3 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKY 170 + +S + RI VL N V PA+A GG++ D L G C GC + +TLK Sbjct: 102 DENSPMEDRINYVLYNEVNPALAAHGGEVSLVEITEDNFAVLRFGGGCQGCSAVDQTLKG 161 Query: 171 GVANILNHFVPEVKDIRT 188 GV L +P++ +R Sbjct: 162 GVEKTLLEQLPQLAGVRD 179 >gi|93007026|ref|YP_581463.1| HesB/YadR/YfhF [Psychrobacter cryohalolentis K5] gi|92394704|gb|ABE75979.1| HesB/YadR/YfhF [Psychrobacter cryohalolentis K5] Length = 257 Score = 87.9 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGI---VFLSMRGACSGCPSASET 167 +D++V +RI VL + + P++A GGD+ +G+ L G C GC + T Sbjct: 164 ADASVEERINYVLQSEINPSLAAHGGDVQLLELIDEEGVGLTAVLKFGGGCQGCSAVDMT 223 Query: 168 LKYGVANILNHFVPEVKDIRT 188 L+ GV L +PE+ + Sbjct: 224 LRQGVEVQLKQQIPELTQVID 244 >gi|308234420|ref|ZP_07665157.1| nitrogen-fixing NifU domain protein [Atopobium vaginae DSM 15829] gi|328944265|ref|ZP_08241729.1| YhgI protein [Atopobium vaginae DSM 15829] gi|327491184|gb|EGF22959.1| YhgI protein [Atopobium vaginae DSM 15829] Length = 189 Score = 87.9 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 1/103 (0%) Query: 87 SGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY- 145 S I + + + + I E + +R ++ DGGDIV Sbjct: 83 SSPDISPEAQHELDNFQAHETPSEKPAHVPINREILEATLDVIRESLQADGGDIVLVNVS 142 Query: 146 RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 DG+V L M GAC+GCP ++ + GV IL VP V + Sbjct: 143 DDGVVTLDMVGACAGCPMSAYDMSEGVERILKEHVPGVVKVEP 185 >gi|226952464|ref|ZP_03822928.1| DNA uptake protein [Acinetobacter sp. ATCC 27244] gi|294649752|ref|ZP_06727157.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] gi|226836786|gb|EEH69169.1| DNA uptake protein [Acinetobacter sp. ATCC 27244] gi|292824361|gb|EFF83159.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] Length = 212 Score = 87.9 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 5/80 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D+++ +RI +L + + P +A GG+ ++ L G C GC + TL Sbjct: 120 DASIEERITYILQSEINPGLAGHGGNCSLVEVQEDAEHGLTAVLKFGGGCQGCSAIDVTL 179 Query: 169 KYGVANILNHFVPEVKDIRT 188 K GV L +PE++ + Sbjct: 180 KQGVETTLRQHIPELQRVVD 199 >gi|307153502|ref|YP_003888886.1| Fe-S cluster assembly protein NifU [Cyanothece sp. PCC 7822] gi|306983730|gb|ADN15611.1| Fe-S cluster assembly protein NifU [Cyanothece sp. PCC 7822] Length = 297 Score = 87.9 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 47/114 (41%) Query: 76 PVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVAR 135 + ++ E + ++ +G ++ +Q I+ VL+ VRP + Sbjct: 184 DIDDILKEVATERTKAVEAATNVVTAKENNTNGFKQLTNIKKIQLIERVLEQEVRPILMA 243 Query: 136 DGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 DGG++ IV + ++GAC C ++ TLK + L + ++ V Sbjct: 244 DGGNVELYDLEGEIVKVVLKGACGSCAGSTATLKIAIEAKLKELIDPALVVQAV 297 >gi|262372009|ref|ZP_06065288.1| iron-sulfur cluster biosynthesis family protein [Acinetobacter junii SH205] gi|262312034|gb|EEY93119.1| iron-sulfur cluster biosynthesis family protein [Acinetobacter junii SH205] Length = 212 Score = 87.9 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D+++ +RI VL + + P + GG+ ++ L G C GC + TL Sbjct: 120 DASIEERITYVLQSEINPGLEGHGGNCSLVEVQNDPEHGLTAVLKFGGGCQGCSAIDVTL 179 Query: 169 KYGVANILNHFVPEVKDIRT 188 K GV L VPE++ + Sbjct: 180 KQGVETTLKQHVPELQRVVD 199 >gi|300867915|ref|ZP_07112555.1| Fe-S cluster assembly protein NifU [Oscillatoria sp. PCC 6506] gi|300334052|emb|CBN57731.1| Fe-S cluster assembly protein NifU [Oscillatoria sp. PCC 6506] Length = 298 Score = 87.9 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 2/106 (1%) Query: 76 PVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE-SDSAVVQRIKEVLDNRVRPAVA 134 P+ +I E F I + + + I++VL+ VRP + Sbjct: 185 PIDDLIAEVFKEKANITKVATEIAFAKETKNQSPTQPLTPIQKISLIQKVLEE-VRPLLI 243 Query: 135 RDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 DGGD+ IV + ++GAC CPS++ TLK + L V Sbjct: 244 ADGGDVELYDVEGDIVKVLLKGACGSCPSSTSTLKGLIETTLKEKV 289 >gi|224476033|ref|YP_002633639.1| hypothetical protein Sca_0540 [Staphylococcus carnosus subsp. carnosus TM300] gi|222420640|emb|CAL27454.1| hypothetical protein with NifU domain [Staphylococcus carnosus subsp. carnosus TM300] Length = 80 Score = 87.9 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 1/64 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ + ++ V++ R+RP + RDGGD DGIV L + GAC+ CPS++ TLK G+ Sbjct: 4 ENTTIFDQVAVVIE-RLRPFLLRDGGDCTLIDVEDGIVKLQLHGACNTCPSSTITLKAGI 62 Query: 173 ANIL 176 L Sbjct: 63 ERAL 66 >gi|307151545|ref|YP_003886929.1| Rieske (2Fe-2S) iron-sulfur domain-containing protein [Cyanothece sp. PCC 7822] gi|306981773|gb|ADN13654.1| Rieske (2Fe-2S) iron-sulfur domain protein [Cyanothece sp. PCC 7822] Length = 292 Score = 87.9 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSAS 165 + +R+ + L+ VRP + GD+ V + + G CS CP+++ Sbjct: 88 HELIKPPQPPLEKRLNQALEE-VRPGLKSHNGDVELVAIELPDTVKVRLVGTCSNCPAST 146 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 T+K GV + ++ PE+ + +V Sbjct: 147 LTMKQGVEQTIKNYCPEITHVISV 170 >gi|149371976|ref|ZP_01891295.1| nifU-like domain protein [unidentified eubacterium SCB49] gi|149355116|gb|EDM43677.1| nifU-like domain protein [unidentified eubacterium SCB49] Length = 80 Score = 87.9 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASETLKYGVA 173 + + +++ LD +RP + DGGDI+ G DG V + ++GAC GC TLK GV Sbjct: 4 AELKTKVEIALDE-IRPFLQTDGGDILLLGIEDGTTVKVQLQGACVGCSVNQMTLKSGVE 62 Query: 174 NILNHFVPEVKDIRTV 189 + P+++ + V Sbjct: 63 MTIKKHAPQIERVINV 78 >gi|205355651|ref|ZP_03222421.1| NifU protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205346428|gb|EDZ33061.1| NifU protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 90 Score = 87.9 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD ++ +K L+ + P + RDGG + F G ++GIV++ + GAC GC S+ TL Sbjct: 1 MMPFSDEELINPVKASLEKSL-PMLERDGGGLEFLGIKNGIVYVHLIGACKGCVSSGTTL 59 Query: 169 KYGVANILNHFV-PEVK 184 KYG+ L + PE+ Sbjct: 60 KYGLERQLKIDIHPEIT 76 >gi|120601745|ref|YP_966145.1| NifU domain-containing protein [Desulfovibrio vulgaris DP4] gi|120561974|gb|ABM27718.1| nitrogen-fixing NifU domain protein [Desulfovibrio vulgaris DP4] gi|311234644|gb|ADP87498.1| nitrogen-fixing NifU domain protein [Desulfovibrio vulgaris RCH1] Length = 75 Score = 87.9 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANI 175 + ++++ L VRP + +DGGD+ +G+V + + G C GCP + +TLK V + Sbjct: 1 MRDKVEQAL-AIVRPLLQQDGGDVELVDITPEGVVRVRLTGRCKGCPMSQKTLKNSVEKM 59 Query: 176 LNHFVPEVKDIRTV 189 + FVP V+ + V Sbjct: 60 VLKFVPAVQRVEAV 73 >gi|254458634|ref|ZP_05072058.1| NifU family protein [Campylobacterales bacterium GD 1] gi|207084400|gb|EDZ61688.1| NifU family protein [Campylobacterales bacterium GD 1] Length = 91 Score = 87.9 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 +D ++ ++ + N++RP++A DGGDI F ++G V++ ++GAC GC S+ TL Sbjct: 1 MIPFTDEELMNPVQVAI-NKIRPSLALDGGDIDFITVKNGNVYVQLKGACIGCASSGSTL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 KYGV L + PE+ + Sbjct: 60 KYGVERQLRMDIHPELTVV 78 >gi|67921275|ref|ZP_00514794.1| Nitrogen-fixing NifU, C-terminal:Rieske [2Fe-2S] region [Crocosphaera watsonii WH 8501] gi|67857392|gb|EAM52632.1| Nitrogen-fixing NifU, C-terminal:Rieske [2Fe-2S] region [Crocosphaera watsonii WH 8501] Length = 286 Score = 87.9 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 3/118 (2%) Query: 74 RPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD-FIESDSAVVQRIKEVLDNRVRPA 132 + + +I P + ++ + D + +RI++ L++ VRP Sbjct: 49 KEALTRLIKTVKKEALPALREAVEDELVYGILRYHDLIKPPTPPLEKRIEQALES-VRPG 107 Query: 133 VARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 + GD+ + V + + G CS CP+++ T+K GV + + PE+ + +V Sbjct: 108 LKSHHGDVELVAIKLPDTVEVQLVGTCSNCPASTLTMKQGVEQAIKTYCPEITKVISV 165 >gi|298706477|emb|CBJ29464.1| iron-sulfur cluster assembly protein, similar to nifU [Ectocarpus siliculosus] Length = 494 Score = 87.9 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 3/106 (2%) Query: 86 ISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVF--K 143 ++ P+ ++ + +VLD VRP + DGG++ Sbjct: 313 MAAPPLPPGIAAPVPDAPPTPPASECNDLEFTLENVDKVLDE-VRPYLIADGGNVRVMGV 371 Query: 144 GYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 +V L+++GAC CPS++ T+K G+ +LN + + V Sbjct: 372 DIDRRVVKLALQGACGSCPSSTTTMKMGIERVLNENFLNMGGVEQV 417 >gi|255525728|ref|ZP_05392659.1| nitrogen-fixing NifU domain protein [Clostridium carboxidivorans P7] gi|296188013|ref|ZP_06856405.1| NifU-like domain protein [Clostridium carboxidivorans P7] gi|255510551|gb|EET86860.1| nitrogen-fixing NifU domain protein [Clostridium carboxidivorans P7] gi|296047139|gb|EFG86581.1| NifU-like domain protein [Clostridium carboxidivorans P7] Length = 73 Score = 87.5 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Query: 127 NRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKD 185 N++RP + RDGGD+ DGIV + M+GAC CP A T+K + L VP VK+ Sbjct: 10 NKIRPMLQRDGGDVELVDVSSDGIVSVKMQGACGNCPGAMMTIKGVIEATLKEEVPGVKE 69 Query: 186 IRTV 189 + V Sbjct: 70 VIGV 73 >gi|260061614|ref|YP_003194694.1| hypothetical protein RB2501_08435 [Robiginitalea biformata HTCC2501] gi|88785746|gb|EAR16915.1| hypothetical protein RB2501_08435 [Robiginitalea biformata HTCC2501] Length = 79 Score = 87.5 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASETLKYG 171 + + +I+ L+ +RP + DGGDI G DG V + + GAC GC TLK G Sbjct: 2 TSEELTSKIEAALEE-IRPFLQSDGGDISLVGIEDGTRVKVRLEGACVGCTVNQMTLKSG 60 Query: 172 VANILNHFVPEVKDIRTV 189 V + P+++ + + Sbjct: 61 VEMTIKKHAPQIEQVINI 78 >gi|293402218|ref|ZP_06646356.1| NifU domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304325|gb|EFE45576.1| NifU domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 78 Score = 87.5 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 I+ V++ ++RP + RDGGD+ + + DGIV + + GAC GC S +TLK G+ I+ Sbjct: 6 DEIRNVIE-KIRPYIQRDGGDVEYVSFTDGIVRVRLLGACVGCMSIGDTLKDGIEAIIMD 64 Query: 179 FVPEVKDIR 187 V V ++R Sbjct: 65 EVAGVSEVR 73 >gi|220907771|ref|YP_002483082.1| Fe-S cluster assembly protein NifU [Cyanothece sp. PCC 7425] gi|219864382|gb|ACL44721.1| Fe-S cluster assembly protein NifU [Cyanothece sp. PCC 7425] Length = 296 Score = 87.5 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I++VL VRP + DGGD+ +V + ++GAC C S++ TLK + L V Sbjct: 225 IQQVLTEEVRPVLMADGGDVELYDVEGDVVKVLLKGACGNCSSSTATLKIAIEARLQERV 284 Query: 181 -PEVKDIRTV 189 P + + V Sbjct: 285 LPSLV-VEAV 293 >gi|325285793|ref|YP_004261583.1| nitrogen-fixing NifU domain-containing protein [Cellulophaga lytica DSM 7489] gi|324321247|gb|ADY28712.1| nitrogen-fixing NifU domain-containing protein [Cellulophaga lytica DSM 7489] Length = 79 Score = 87.5 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASETLKYG 171 + V +++ L+ +RP + DGGDI + V + + GAC GC TLK G Sbjct: 2 TTEEVRTNVEKALEE-IRPFLQSDGGDISLISIDNDTSVKVKLEGACVGCSVNQMTLKSG 60 Query: 172 VANILNHFVPEVKDIRTV 189 V + +VP+++++ V Sbjct: 61 VEMTIKKYVPQIEEVINV 78 >gi|57505611|ref|ZP_00371538.1| NifU domain protein [Campylobacter upsaliensis RM3195] gi|57016158|gb|EAL52945.1| NifU domain protein [Campylobacter upsaliensis RM3195] Length = 90 Score = 87.5 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD ++ +K+ L+ + P + RDGG + F G ++GIV++ + GAC GC S+S TL Sbjct: 1 MIPFSDEELINPVKKSLEKSL-PILERDGGGLEFLGVKNGIVYVHLIGACKGCASSSITL 59 Query: 169 KYGVANILNHFV-PEV 183 KY + L + PE+ Sbjct: 60 KYSLERQLKMDIHPEI 75 >gi|152990000|ref|YP_001355722.1| hypothetical protein NIS_0251 [Nitratiruptor sp. SB155-2] gi|151421861|dbj|BAF69365.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 100 Score = 87.5 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 2/78 (2%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 SD + +++V++ +++P +A DGGDI G ++G VF+ + GAC GC ++ TLK Sbjct: 3 IPFSDEDLYPAVEKVIE-KIKPMLALDGGDIKLLGVKNGRVFVQLGGACVGCSASGNTLK 61 Query: 170 YGVANILNHFV-PEVKDI 186 YGV L + PE++ + Sbjct: 62 YGVERQLKIDIHPEIEVV 79 >gi|86141694|ref|ZP_01060218.1| nifU protein-like [Leeuwenhoekiella blandensis MED217] gi|85831257|gb|EAQ49713.1| nifU protein-like [Leeuwenhoekiella blandensis MED217] Length = 80 Score = 87.5 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASETLKYG 171 +D+ + +++ L+ +RP + DGGDI DG V + + GAC GC TLK G Sbjct: 2 TDTELKGKVEAALEE-IRPFLQSDGGDIALLSIEDGTTVKVQLEGACVGCSVNQMTLKSG 60 Query: 172 VANILNHFVPEVKDIRTV 189 V + P+++ + + Sbjct: 61 VEMTIKKHAPQIERVINI 78 >gi|118475450|ref|YP_891271.1| NifU family protein [Campylobacter fetus subsp. fetus 82-40] gi|118414676|gb|ABK83096.1| NifU family protein [Campylobacter fetus subsp. fetus 82-40] Length = 88 Score = 87.5 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD +++ +KE L + P + +DGG + G ++G+V++ + G C GC ++S+TL Sbjct: 1 MIPFSDEELLEPVKESL-KVIMPMLEQDGGGMELLGIKNGVVYVRLTGHCHGCAASSQTL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 KYGV L + PE+ + Sbjct: 60 KYGVERQLKVDIHPELSVV 78 >gi|46579079|ref|YP_009887.1| nitrogen fixation protein nifU [Desulfovibrio vulgaris str. Hildenborough] gi|120603338|ref|YP_967738.1| Fe-S cluster assembly protein NifU [Desulfovibrio vulgaris DP4] gi|46448492|gb|AAS95146.1| nitrogen fixation protein nifU [Desulfovibrio vulgaris str. Hildenborough] gi|120563567|gb|ABM29311.1| Fe-S cluster assembly protein NifU [Desulfovibrio vulgaris DP4] gi|311232925|gb|ADP85779.1| Fe-S cluster assembly protein NifU [Desulfovibrio vulgaris RCH1] Length = 281 Score = 87.5 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 41/77 (53%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ +Q + +VLD +RP + +DGGDI V +++RG C+ CPS+ TLK V Sbjct: 203 TNVQRMQLVMKVLDGEIRPRLQQDGGDIELVDMNGTEVMVALRGMCTSCPSSQLTLKEFV 262 Query: 173 ANILNHFVPEVKDIRTV 189 L V + +R V Sbjct: 263 ERTLRDHVDQEIVVREV 279 >gi|126656692|ref|ZP_01727906.1| hypothetical protein CY0110_23676 [Cyanothece sp. CCY0110] gi|126621912|gb|EAZ92620.1| hypothetical protein CY0110_23676 [Cyanothece sp. CCY0110] Length = 286 Score = 87.2 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 2/75 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVAN 174 + +RI++ L+ VRP + GD+ + V + + G CS CP+++ T+K GV Sbjct: 92 PLEKRIQQALET-VRPGLKSHHGDVELVAIKLPDTVEVQLVGTCSNCPASTLTMKQGVEQ 150 Query: 175 ILNHFVPEVKDIRTV 189 + + PE+K++ +V Sbjct: 151 AIKTYCPEIKNVISV 165 >gi|225012595|ref|ZP_03703030.1| nitrogen-fixing NifU domain protein [Flavobacteria bacterium MS024-2A] gi|225003128|gb|EEG41103.1| nitrogen-fixing NifU domain protein [Flavobacteria bacterium MS024-2A] Length = 84 Score = 87.2 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASETLKYG 171 + + +I+E L+ +RP + DGGDI DG V + + GAC GC TLK G Sbjct: 2 NSEEINVKIREALEE-IRPFLKSDGGDISLVSVEDGKHVKVQLHGACVGCSVNQMTLKSG 60 Query: 172 VANILNHFVPEVKDIRTV 189 V + ++P+++ + ++ Sbjct: 61 VELTIKKYLPQIETVTSI 78 >gi|21672789|ref|NP_660856.1| hypothetical protein BUsg525 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091672|sp|Q8K934|NFUA_BUCAP RecName: Full=Fe/S biogenesis protein nfuA gi|21623438|gb|AAM68067.1| hypothetical 21.0 kDa protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 192 Score = 87.2 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 66/179 (36%), Gaps = 14/179 (7%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + + HF + E R+F I PG + G + T +D + ++ Sbjct: 4 ISDKAQNHFISLLSKEPIGTQIRVFIINPGTQNAECGVAYCT--EDDVENHDIKLNYNHF 61 Query: 81 -------IMEHFISGDP---IIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVR 130 I+ + + + + G K + S++ +RI+ L+N + Sbjct: 62 FVYVDRSIISFLKNSEIDLIVDNVGSQLTFKAPYAKQNYSKNTASSLKERIENFLNNNIN 121 Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P ++ GG + ++ + G C+GC TLK V + F PE+K + Sbjct: 122 PQLSMHGGKVHLIQISQNNTALIKFTGGCNGCSMIGTTLKEIVEKKILSFFPEIKKVID 180 >gi|157804286|gb|ABV79889.1| NifU [Anabaena siamensis TISTR 8012] Length = 195 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 1/114 (0%) Query: 77 VLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE-SDSAVVQRIKEVLDNRVRPAVAR 135 + +I E N K + G ++ + I++VLD VR + Sbjct: 82 IDDIISEVKQESAKQNLNINGAKAKTEISSVGQQKPLTNVQKIALIQKVLDEEVRLVLIA 141 Query: 136 DGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 DGGD+ V + ++GAC C S++ TLK + L + + + V Sbjct: 142 DGGDVELYDIEGDKVKVKLQGACGSCSSSTATLKIAIEARLRDRISKDIIVEAV 195 >gi|256819880|ref|YP_003141159.1| nitrogen-fixing NifU domain-containing protein [Capnocytophaga ochracea DSM 7271] gi|256581463|gb|ACU92598.1| nitrogen-fixing NifU domain protein [Capnocytophaga ochracea DSM 7271] Length = 79 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLKYGVA 173 + Q + + LD ++RP + DGGDI DG IV + + G C+ C TLK GV Sbjct: 4 EELKQEVIKALD-KIRPYLQNDGGDISLVDIEDGKIVKVRLEGTCTNCSVNQLTLKSGVE 62 Query: 174 NILNHFVPEVKDIRTV 189 + FVP+++ + +V Sbjct: 63 MTIKEFVPQIEKVISV 78 >gi|57233705|ref|YP_182326.1| NifU-like protein [Dehalococcoides ethenogenes 195] gi|57224153|gb|AAW39210.1| NifU-like protein [Dehalococcoides ethenogenes 195] Length = 72 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 49/72 (68%), Gaps = 1/72 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++++++ VLD ++RPA+ DGG++ DG+V + + GAC+GCP ++ TLK G+ IL Sbjct: 1 MLEKVEAVLD-KIRPALEADGGNVELVEVVDGVVKVKLVGACAGCPMSTMTLKNGIEKIL 59 Query: 177 NHFVPEVKDIRT 188 +PEVK++ Sbjct: 60 KREIPEVKEVVA 71 >gi|296113867|ref|YP_003627805.1| nifU-like protein [Moraxella catarrhalis RH4] gi|295921561|gb|ADG61912.1| nifU-like protein [Moraxella catarrhalis RH4] gi|326560549|gb|EGE10930.1| nifU-like protein [Moraxella catarrhalis 103P14B1] gi|326561419|gb|EGE11769.1| nifU-like protein [Moraxella catarrhalis 46P47B1] gi|326562191|gb|EGE12519.1| nifU-like protein [Moraxella catarrhalis 7169] gi|326565627|gb|EGE15790.1| nifU-like protein [Moraxella catarrhalis 12P80B1] gi|326567147|gb|EGE17269.1| nifU-like protein [Moraxella catarrhalis BC1] gi|326568427|gb|EGE18507.1| nifU-like protein [Moraxella catarrhalis BC7] gi|326572317|gb|EGE22312.1| nifU-like protein [Moraxella catarrhalis BC8] gi|326573929|gb|EGE23879.1| nifU-like protein [Moraxella catarrhalis O35E] gi|326574921|gb|EGE24851.1| nifU-like protein [Moraxella catarrhalis 101P30B1] gi|326576248|gb|EGE26163.1| nifU-like protein [Moraxella catarrhalis CO72] Length = 203 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 55/166 (33%), Gaps = 16/166 (9%) Query: 37 EISPLASRIFSIP-GIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNG 95 E + RIF G + D+ D + L P +H+ Sbjct: 27 EEEGIGVRIFVEHAGTPRAECCMSYCH--ADEIDDQDLHIDYAKFTAHIDADSIPYLHDA 84 Query: 96 GLGDMKLDDMGSGDFIE---------SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR 146 + K G F ++++ +RI VL + + P +A GG + Sbjct: 85 VIDYNKDRFGGQLTFRAPNSKVPQVGENASIEERINYVLQSEINPNLASHGGSVDLLEVI 144 Query: 147 DG----IVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 + L G C GC + TL+ GV L +PE+ + Sbjct: 145 EDEAGLTAVLKFGGGCQGCSAVDVTLRQGVEVQLKQQIPELTQVVD 190 >gi|163753376|ref|ZP_02160500.1| nifU-like domain protein [Kordia algicida OT-1] gi|161327108|gb|EDP98433.1| nifU-like domain protein [Kordia algicida OT-1] Length = 79 Score = 87.2 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASETLKYG 171 + + +++ LD +RP + DGGDI G + V + + GAC GC TLK G Sbjct: 2 TSEEIKYNVQKALDE-IRPFLQSDGGDIKLVGIENDTLVKVQLEGACVGCSVNQMTLKSG 60 Query: 172 VANILNHFVPEVKDIRTV 189 V + VP+++ + +V Sbjct: 61 VEMTIKKHVPQIEKVISV 78 >gi|332878832|ref|ZP_08446547.1| NifU-like protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683183|gb|EGJ56065.1| NifU-like protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 78 Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLKYG 171 + + + +K LD ++RP + DGGDI D IV + + G C+ C TLK G Sbjct: 2 TSEELREEVKNALD-KIRPYLQNDGGDITLVDIEDDKIVKVRLEGTCTNCAVNQMTLKSG 60 Query: 172 VANILNHFVPEVKDIRTV 189 V + FVP+++ + ++ Sbjct: 61 VEMTIKEFVPQIEQVISI 78 >gi|78358118|ref|YP_389567.1| Fe-S cluster assembly protein NifU [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220523|gb|ABB39872.1| Fe-S cluster assembly protein NifU [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 280 Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 2/102 (1%) Query: 89 DPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG 148 ++ + S+ +Q + + L+ +RP++ +DGGDI Sbjct: 179 QKLLDEELGKTAACEVPEPQPRTLSNVQRMQLVVKTLEEDIRPSLQKDGGDIELVDIDGK 238 Query: 149 IVFLSMRGACSGCPSASETLKYGVANILNHFV-PEVKDIRTV 189 V +++RG C+ CPS+ TL V L V P++ ++ V Sbjct: 239 EVKVALRGMCTHCPSSQLTLTNFVQRTLREHVEPDIT-VKEV 279 >gi|71275227|ref|ZP_00651514.1| Nitrogen-fixing NifU, C-terminal [Xylella fastidiosa Dixon] gi|71899552|ref|ZP_00681708.1| HesB/YadR/YfhF:Nitrogen-fixing NifU, C-terminal [Xylella fastidiosa Ann-1] gi|71899937|ref|ZP_00682084.1| HesB/YadR/YfhF:Nitrogen-fixing NifU, C-terminal [Xylella fastidiosa Ann-1] gi|170731222|ref|YP_001776655.1| thioredoxin-like protein [Xylella fastidiosa M12] gi|254767338|sp|B0U5V3|NFUA_XYLFM RecName: Full=Fe/S biogenesis protein nfuA gi|71164036|gb|EAO13751.1| Nitrogen-fixing NifU, C-terminal [Xylella fastidiosa Dixon] gi|71730300|gb|EAO32384.1| HesB/YadR/YfhF:Nitrogen-fixing NifU, C-terminal [Xylella fastidiosa Ann-1] gi|71730681|gb|EAO32756.1| HesB/YadR/YfhF:Nitrogen-fixing NifU, C-terminal [Xylella fastidiosa Ann-1] gi|167966015|gb|ACA13025.1| thioredoxin-like protein [Xylella fastidiosa M12] Length = 199 Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVA 173 +++V+R+ V++N + P +A GG + + +G+V L G C GC A TLK GV Sbjct: 107 ASLVERVCWVVENEINPQLASHGGRVEVQEVSAEGVVLLRFGGGCHGCGMADVTLKQGVE 166 Query: 174 NILNHFVPEVKDIRT 188 L V V +R Sbjct: 167 KTLMERVHGVIAVRD 181 >gi|300785684|ref|YP_003765975.1| thioredoxin-like protein [Amycolatopsis mediterranei U32] gi|299795198|gb|ADJ45573.1| thioredoxin-like protein [Amycolatopsis mediterranei U32] Length = 172 Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 8/118 (6%) Query: 71 EHLRPPVLGMIMEHFISGD----PIIHNGGLGDMKLDDMGSGDFIESD---SAVVQRIKE 123 L ++ ++E + +G ++ L + DD G + D + +R+ E Sbjct: 23 AELAEDLVHTLLEFYGAGLARIVELVDRPLLDRLAEDDHVRGLLVLHDLHPRSTHERVTE 82 Query: 124 VLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP 181 LD +VRP + GD+ F DG++ L ++G C GCPS++ T KY + ++ P Sbjct: 83 ALD-KVRPYLGSHAGDVEFVEIADGVLRLRLQGTCDGCPSSTVTAKYAIERVVREAAP 139 >gi|224373701|ref|YP_002608073.1| NifU family protein [Nautilia profundicola AmH] gi|223588484|gb|ACM92220.1| NifU family protein [Nautilia profundicola AmH] Length = 98 Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASET 167 + S+ + + + VLD VRP + DGGD+ R IVF+ ++G C GC SA T Sbjct: 2 AEIPFSNEDLKEAVAGVLDE-VRPMLQMDGGDVTLIDVRKPIVFVQLQGGCVGCASAGAT 60 Query: 168 LKYGVANILNHFV-PEV 183 LKYG+ L + PE+ Sbjct: 61 LKYGIEKALKEKIHPEL 77 >gi|224130940|ref|XP_002320962.1| predicted protein [Populus trichocarpa] gi|222861735|gb|EEE99277.1| predicted protein [Populus trichocarpa] Length = 220 Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 1/96 (1%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLS 153 G + + +++ VRP + DGG++ DG++ L Sbjct: 51 TAIKATAPTGSSSPGLHSAQQFELNPQNVDLVLEEVRPYLISDGGNVDVVSVEDGVITLK 110 Query: 154 MRGACSGCPSASETLKYGVANILNHFVPE-VKDIRT 188 ++GAC C S+ T+K G+ +L + V+DIR Sbjct: 111 LQGACGNCASSETTMKMGIERVLKEKFGDAVQDIRQ 146 Score = 42.9 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 9/89 (10%) Query: 101 KLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSG 160 + D+ F E V+ I + LD +RPA+ GG + +G + G Sbjct: 140 AVQDIRQLSFEEPKETTVEAINDHLDI-LRPAIKNFGGSVEVLSVENGGCRVEYTG---- 194 Query: 161 CPSASETLKYGVANILNHFVPEVKDIRTV 189 P + G+ + P++ D+ V Sbjct: 195 -PESIG---SGIKAAIKEKFPDIVDVVFV 219 >gi|172036772|ref|YP_001803273.1| NifU-like protein [Cyanothece sp. ATCC 51142] gi|171698226|gb|ACB51207.1| NifU-like protein [Cyanothece sp. ATCC 51142] Length = 286 Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 51/118 (43%), Gaps = 3/118 (2%) Query: 74 RPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD-FIESDSAVVQRIKEVLDNRVRPA 132 + + +I P + ++ + D + + +R+++ L VRP Sbjct: 49 KEALSRLIKTVKKEALPSLREAVKDELVYGLLRYHDLIKPPNPPLEKRLEQALAT-VRPG 107 Query: 133 VARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 + GD+ + V + + G CS CP+++ T+K G+ + + PE+ ++ +V Sbjct: 108 LKSHHGDVELVAIKLPNTVEVKLVGTCSNCPASTLTMKQGIEQAIKTYCPEITNVISV 165 >gi|213961919|ref|ZP_03390184.1| conserved domain protein [Capnocytophaga sputigena Capno] gi|213955272|gb|EEB66589.1| conserved domain protein [Capnocytophaga sputigena Capno] Length = 77 Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLKYGVA 173 + + + LD ++RP + DGGDI DG IV + + G C+ C TL+ GV Sbjct: 2 EELRNEVIKALD-KIRPYLQNDGGDITLVDIEDGKIVKVRLEGTCTNCSVNQLTLRSGVE 60 Query: 174 NILNHFVPEVKDIRTV 189 + +VP+++ + +V Sbjct: 61 MTIKEYVPQIEKVISV 76 >gi|315225280|ref|ZP_07867097.1| nitrogen fixation protein NifU [Capnocytophaga ochracea F0287] gi|314944963|gb|EFS96995.1| nitrogen fixation protein NifU [Capnocytophaga ochracea F0287] Length = 79 Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 2/76 (2%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLKYGVA 173 + Q++ + LD ++RP + DGGDI DG IV + + G C+ C TLK GV Sbjct: 4 EKLKQKVIKALD-KIRPYLQNDGGDISLVDIEDGKIVKVRLEGTCTNCSVNQLTLKSGVE 62 Query: 174 NILNHFVPEVKDIRTV 189 + FVP+++ + +V Sbjct: 63 MTIKEFVPQIEKVISV 78 >gi|325972864|ref|YP_004249055.1| nitrogen-fixing NifU domain-containing protein [Spirochaeta sp. Buddy] gi|324028102|gb|ADY14861.1| nitrogen-fixing NifU domain-containing protein [Spirochaeta sp. Buddy] Length = 75 Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 2/71 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++K +++ +RP++ DGGDI F V + ++GAC+GCP + TLK GV L Sbjct: 1 MEDKVKRAIED-IRPSLQNDGGDIEFVSLVGSDVTVRLKGACAGCPMSQMTLKSGVERYL 59 Query: 177 NHFV-PEVKDI 186 +FV P++ + Sbjct: 60 RNFVDPKLTVV 70 >gi|309776492|ref|ZP_07671474.1| NifU domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308915720|gb|EFP61478.1| NifU domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 76 Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + IK+ ++ ++RP + RDGGD+ F + DGIV + + GAC GC S +T++ G+ IL Sbjct: 5 IDEIKQTIE-KIRPYIQRDGGDVEFVSFEDGIVGVRLLGACVGCMSIDDTIQGGIEAILL 63 Query: 178 HFVPEVKDIRTV 189 V V +R V Sbjct: 64 DEVDGVSGVRLV 75 >gi|330507732|ref|YP_004384160.1| NifU-like domain-containing protein [Methanosaeta concilii GP-6] gi|328928540|gb|AEB68342.1| NifU-like domain protein [Methanosaeta concilii GP-6] Length = 75 Score = 86.8 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ L ++R + DGGD+ DGIV + ++G C+GCP + TLK + L Sbjct: 4 LNDEVEAAL-GKIREGLRVDGGDVELVDISDGIVTVRLQGHCAGCPFSQMTLKNFIEKEL 62 Query: 177 NHFVPEVKDIRTV 189 V +K + +V Sbjct: 63 VKSVAGIKGVVSV 75 >gi|51702196|sp|Q9PAB5|NFUA_XYLFA RecName: Full=Fe/S biogenesis protein nfuA Length = 199 Score = 86.4 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVA 173 +++V+R+ V++N + P +A GG + + +G+V L G C GC TLK GV Sbjct: 107 ASLVERVCWVVENEINPQLASHGGRVEVQEVSAEGVVLLRFGGGCHGCGMVDVTLKQGVE 166 Query: 174 NILNHFVPEVKDIRT 188 L V V +R Sbjct: 167 KTLMERVHGVIAVRD 181 >gi|9081905|gb|AAF82636.1|AF167538_3 NifU [Trichodesmium erythraeum IMS101] Length = 291 Score = 86.4 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 33/69 (47%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I++VL VRP +A DGGD+ V + ++GAC C + TLK + L V Sbjct: 223 IQQVLQQEVRPVLAEDGGDVELFDVDGDRVLVKLKGACGSCSNVLVTLKGAIEATLKERV 282 Query: 181 PEVKDIRTV 189 E + V Sbjct: 283 SESLVVEAV 291 >gi|116753461|ref|YP_842579.1| NifU domain-containing protein [Methanosaeta thermophila PT] gi|116664912|gb|ABK13939.1| nitrogen-fixing NifU domain protein [Methanosaeta thermophila PT] Length = 75 Score = 86.4 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 ++ + ++ L++ +R + +GGD+ DG+V++ + G+C+GCP + TL+ V Sbjct: 2 QSMKEEVESTLES-IRNVLRIEGGDVELVDINDGVVYVKLTGSCAGCPFSQMTLRNFVER 60 Query: 175 ILNHFVPEVKDIRTV 189 L V VK + +V Sbjct: 61 ELKKNVSGVKAVESV 75 >gi|125995235|dbj|BAF47150.1| NifU [Gloeothece sp. KO68DGA] Length = 293 Score = 86.4 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 76 PVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVAR 135 + +I E + + + ++ + I++VL+ V+PA+A+ Sbjct: 184 DIDDLIAEVMHERETAVAVATEVVKAKSEPKPL----TNIQKITLIQQVLEEEVKPALAQ 239 Query: 136 DGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV-PEVKDIRTV 189 DGGD +V + ++GAC C S+++TLK + L + PE+ + V Sbjct: 240 DGGDCDLFDVDGDLVKVVLKGACGSCASSTQTLKIAIEARLRDRISPELT-VIAV 293 >gi|255319128|ref|ZP_05360346.1| IscR-regulated protein YhgI [Acinetobacter radioresistens SK82] gi|262379260|ref|ZP_06072416.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] gi|255303774|gb|EET82973.1| IscR-regulated protein YhgI [Acinetobacter radioresistens SK82] gi|262298717|gb|EEY86630.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] Length = 212 Score = 86.4 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D+++ +RI VL + + P +A GG+ + L G C GC + TL Sbjct: 120 DASIEERITYVLQSEINPGLAGHGGNCALVEVVEDEEHGLTAVLKFGGGCQGCSAIDVTL 179 Query: 169 KYGVANILNHFVPEVKDIRT 188 K GV L +PE+ + Sbjct: 180 KQGVETTLKQHIPELSRVVD 199 >gi|94502038|ref|ZP_01308544.1| Thioredoxin-like protein [Oceanobacter sp. RED65] gi|94425845|gb|EAT10847.1| Thioredoxin-like protein [Oceanobacter sp. RED65] Length = 192 Score = 86.4 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYG 171 DS + ++ +L N + P +A GG++ D + L G C GC + TLK G Sbjct: 104 DDSPIQDQVNYILYNEINPGLASHGGEVKLVEVTEDNLAILEFGGGCQGCSAVDITLKEG 163 Query: 172 VANILNHFVPEVKDIRT 188 + L +P++ IR Sbjct: 164 IEKTLLSKLPQLSGIRD 180 >gi|257457207|ref|ZP_05622382.1| nitrogen-fixing NifU domain protein [Treponema vincentii ATCC 35580] gi|257445358|gb|EEV20426.1| nitrogen-fixing NifU domain protein [Treponema vincentii ATCC 35580] Length = 94 Score = 86.4 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + + +++ LD VRP + GGD+ + DG+V + G C+GCP+A T + + L Sbjct: 1 MYEELEKTLDTYVRPLLRTHGGDMQVVDFTDGVVKFKLHGHCAGCPAADFTTENLIQTEL 60 Query: 177 NHFVPEVKDIRTV 189 +PEVK R V Sbjct: 61 MAHLPEVK--RAV 71 >gi|113477555|ref|YP_723616.1| Fe-S cluster assembly protein NifU [Trichodesmium erythraeum IMS101] gi|110168603|gb|ABG53143.1| Fe-S cluster assembly protein NifU [Trichodesmium erythraeum IMS101] Length = 291 Score = 86.4 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 33/69 (47%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I++VL VRP +A DGGD+ V + ++GAC C + TLK + L V Sbjct: 223 IQQVLQQEVRPVLAEDGGDVELFDVDGDRVLVKLKGACGSCSNVLVTLKGAIEATLKERV 282 Query: 181 PEVKDIRTV 189 E + V Sbjct: 283 SESLVVEAV 291 >gi|256372488|ref|YP_003110312.1| nitrogen-fixing NifU domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256009072|gb|ACU54639.1| nitrogen-fixing NifU domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 204 Score = 86.4 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 46/99 (46%) Query: 91 IIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIV 150 ++ + D+ S + +R+ +L +V PA+A GG G D + Sbjct: 90 LVIENPNAPTRQSDLPEFGPEALTSDLARRVDSILQEQVNPAIAAHGGYAELVGVVDEVA 149 Query: 151 FLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 ++ M G C GC AS TL G+A + VPE++D+ V Sbjct: 150 YVLMGGGCQGCGLASATLTQGIAVAIRDAVPEIRDVVDV 188 >gi|315639115|ref|ZP_07894282.1| NifU family protein [Campylobacter upsaliensis JV21] gi|315480819|gb|EFU71456.1| NifU family protein [Campylobacter upsaliensis JV21] Length = 90 Score = 86.4 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD ++ +K+ L+ + P + RDGG + F G ++G+V++ + GAC GC S+ TL Sbjct: 1 MMPFSDEELINPVKKSLEKSL-PILERDGGGLEFLGVKNGVVYVHLIGACKGCASSGITL 59 Query: 169 KYGVANILNHFV-PEV 183 KY + L + PE+ Sbjct: 60 KYSLERQLKMDIHPEI 75 >gi|284036029|ref|YP_003385959.1| nitrogen-fixing NifU domain protein [Spirosoma linguale DSM 74] gi|283815322|gb|ADB37160.1| nitrogen-fixing NifU domain protein [Spirosoma linguale DSM 74] Length = 88 Score = 86.4 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYG 171 ++ ++ +++ LD+ +RP +A DGG++ D V L + G+C CP ++ T K G Sbjct: 6 NNDQLISKVERALDS-MRPYLAADGGNVKVLEITEDKTVRLELVGSCGSCPMSAMTFKGG 64 Query: 172 VANILNHFVPEVKDIRTV 189 + + VPE+ + V Sbjct: 65 LEEAILKAVPEITKVEAV 82 >gi|154413784|ref|XP_001579921.1| NifU-like domain containing protein [Trichomonas vaginalis G3] gi|121914133|gb|EAY18935.1| NifU-like domain containing protein [Trichomonas vaginalis G3] Length = 112 Score = 86.4 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 106 GSGDFIESDSA-VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSA 164 E+D+ + QR+ ++++ +VRP + +D GDI ++G + + + GAC GC Sbjct: 21 AKEAVKETDADKLFQRVNKIIEEKVRPFIKQDHGDIELVDIKNGCMIVQLEGACEGCGCK 80 Query: 165 SETLKYGVANILNHFVPEVKDIRT 188 + TL GV + +PE+ +IR Sbjct: 81 NTTLYNGVLGTVQEEIPEITNIRQ 104 >gi|295400424|ref|ZP_06810403.1| nitrogen-fixing NifU domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|294977699|gb|EFG53298.1| nitrogen-fixing NifU domain protein [Geobacillus thermoglucosidasius C56-YS93] Length = 283 Score = 86.4 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + R+ L+ VRP + GG + ++ ++GACSGC ++ TLK GV Sbjct: 87 QDLFTRVAAALEE-VRPYMRSHGGGVELVEVEGKTAYVRLQGACSGCSLSAVTLKNGVEE 145 Query: 175 ILNHFVP 181 + VP Sbjct: 146 AIKARVP 152 >gi|253746010|gb|EET01549.1| Hypothetical protein GL50581_1173 [Giardia intestinalis ATCC 50581] Length = 197 Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 8/159 (5%) Query: 36 AEISPLASRIFSIPGIASVYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHN 94 E S L + + G+ + +TV + Q W +R + I F P + Sbjct: 40 PEASSLQCDLLKVKGVKKLSITPTGVTVTVRSQGLWPSIRSEIENKIYSAFDPDTPHTPD 99 Query: 95 GGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR---DG-IV 150 ++ D + +G S+ + + + ++ + P +ARDGG +K Y +G IV Sbjct: 100 ELRLAIQ-DILSTGSLSPSN--IRKASELLIRAAINPFLARDGGSCSYKRYESTDEGLIV 156 Query: 151 FLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 ++ + G CSGC ++ T+ V ++P V ++ + Sbjct: 157 YIELHGNCSGCSKSANTMNNFVIGEFKKYIPNVSTVKCI 195 >gi|186680893|ref|YP_001864089.1| Rieske (2Fe-2S) domain-containing protein [Nostoc punctiforme PCC 73102] gi|186463345|gb|ACC79146.1| Rieske (2Fe-2S) domain protein [Nostoc punctiforme PCC 73102] Length = 281 Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 3/118 (2%) Query: 74 RPPVLGMIMEHFISGDPIIHNGGLGDMKLDDM-GSGDFIESDSAVVQRIKEVLDNRVRPA 132 + + +I P + + ++ + + QRI+ L+ VRP Sbjct: 41 KAALTNLIKNLKQESMPALRHAVADELVYAVLLYHELVKPPKPPLAQRIETALEE-VRPG 99 Query: 133 VARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 + GD+ + V + + G CS CP+++ TL GV + + PE+ + V Sbjct: 100 LKSHDGDVELVAIKSPDTVEVRLIGTCSSCPASTLTLSQGVEQAIKNHCPEITKVVAV 157 >gi|317472464|ref|ZP_07931786.1| NifU domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316900037|gb|EFV22029.1| NifU domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 99 Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 46/73 (63%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +++ I++VL+ VRP + G++ Y++GI+ + + G CSGCPSA+ T + +A + Sbjct: 1 MLREIEKVLEEDVRPYLLEHEGNVRISEYKEGILKVRLTGQCSGCPSAALTTEELIAEAV 60 Query: 177 NHFVPEVKDIRTV 189 +PEVKD+ V Sbjct: 61 KKKIPEVKDVVLV 73 >gi|317153414|ref|YP_004121462.1| Fe-S cluster assembly protein NifU [Desulfovibrio aespoeensis Aspo-2] gi|316943665|gb|ADU62716.1| Fe-S cluster assembly protein NifU [Desulfovibrio aespoeensis Aspo-2] Length = 283 Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLS 153 G+ + ++ + I+ V+DN +RP + DGGDI V + Sbjct: 188 GEGVCQTPSEGPAHPAQGMTNIQRMHLIESVIDNEIRPMLQADGGDIRLVDIDRQTVVVK 247 Query: 154 MRGACSGCPSASETLKYGVANILNHFV-PEVKDIRT 188 G CS CPS+ TL+ + L V PE++ +R Sbjct: 248 FIGMCSNCPSSHLTLQNVIEAKLKEKVDPEIR-VRE 282 >gi|15839192|ref|NP_299880.1| hypothetical protein XF2603 [Xylella fastidiosa 9a5c] gi|9107825|gb|AAF85400.1|AE004067_7 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 176 Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVA 173 +++V+R+ V++N + P +A GG + + +G+V L G C GC TLK GV Sbjct: 84 ASLVERVCWVVENEINPQLASHGGRVEVQEVSAEGVVLLRFGGGCHGCGMVDVTLKQGVE 143 Query: 174 NILNHFVPEVKDIRT 188 L V V +R Sbjct: 144 KTLMERVHGVIAVRD 158 >gi|255321743|ref|ZP_05362898.1| NifU family protein [Campylobacter showae RM3277] gi|255301223|gb|EET80485.1| NifU family protein [Campylobacter showae RM3277] Length = 89 Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 +D +++ +K L +V P + DGG + G ++G +++ + G C GC ++S TL Sbjct: 1 MIPFTDEELLKPVKASLQ-KVLPMLENDGGGMELLGIKNGKIYVRLTGHCHGCAASSTTL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 KYG+ L + PE++ + Sbjct: 60 KYGIERQLRMDIHPELEVV 78 >gi|218439087|ref|YP_002377416.1| Fe-S cluster assembly protein NifU [Cyanothece sp. PCC 7424] gi|218171815|gb|ACK70548.1| Fe-S cluster assembly protein NifU [Cyanothece sp. PCC 7424] Length = 293 Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 45/110 (40%) Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGD 139 I + ++ SG ++ +Q I++VL+ VRP + DGG+ Sbjct: 184 AIDDILAEVAQEKAKAVEVATEVVTASSGFGQLTNLKKIQLIEQVLEKEVRPILKADGGN 243 Query: 140 IVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 + + + ++GAC C ++ TLK+ + + L + + V Sbjct: 244 VELYDVEGHRIKVVLKGACGSCAGSTATLKHAIEDKLRELIDSTLVVEAV 293 >gi|290967833|ref|ZP_06559386.1| NifU-like protein [Megasphaera genomosp. type_1 str. 28L] gi|290782192|gb|EFD94767.1| NifU-like protein [Megasphaera genomosp. type_1 str. 28L] Length = 94 Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 43/69 (62%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +++ +L ++RP++ GG++ Y DGI+ + + G CSGCPSA+ T + + I+ Sbjct: 5 AQLETLLAEKIRPSLQAHGGNVEIISYTDGILRIRLTGRCSGCPSATLTTEEFINQIVQT 64 Query: 179 FVPEVKDIR 187 P+V+++R Sbjct: 65 AFPDVREVR 73 >gi|305666181|ref|YP_003862468.1| Nitrogen-fixing NifU-like protein [Maribacter sp. HTCC2170] gi|88707679|gb|EAQ99920.1| Nitrogen-fixing NifU-like protein [Maribacter sp. HTCC2170] Length = 79 Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYG 171 + + + +++ L+ +RP + DGGDI D V + ++GAC GC TLK G Sbjct: 2 TSTELKINVEKALEE-IRPFLQSDGGDIELVSIDNDSSVKVKLQGACVGCSVNQMTLKSG 60 Query: 172 VANILNHFVPEVKDIRTV 189 V + + P+++++ + Sbjct: 61 VEMTIKKYAPQIEEVINI 78 >gi|300776481|ref|ZP_07086339.1| nitrogen fixation protein NifU [Chryseobacterium gleum ATCC 35910] gi|300501991|gb|EFK33131.1| nitrogen fixation protein NifU [Chryseobacterium gleum ATCC 35910] Length = 82 Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 V R+ E L++ +RP + +DGGDI +D VF+ + G CSGC TLK GV N Sbjct: 8 EDTVTRVMEALES-IRPFLNKDGGDIELIDVKDNQVFVKLLGNCSGCSLNFSTLKLGVEN 66 Query: 175 ILNHFVPEVKDIRTV 189 + PE++ + V Sbjct: 67 TIKQHAPEIEKVINV 81 >gi|262375821|ref|ZP_06069053.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] gi|262309424|gb|EEY90555.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] Length = 212 Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D++V +RI VL + + P +A GG+ ++ L G C GC + TL Sbjct: 120 DASVEERITYVLQSEINPGLAGHGGNCALVEVKEDPEKGLTAVLKFGGGCQGCSAIDITL 179 Query: 169 KYGVANILNHFVPEVKDIRT 188 K GV L VPE+ + Sbjct: 180 KQGVETTLKQHVPELMHVVD 199 >gi|332702422|ref|ZP_08422510.1| Fe-S cluster assembly protein NifU [Desulfovibrio africanus str. Walvis Bay] gi|332552571|gb|EGJ49615.1| Fe-S cluster assembly protein NifU [Desulfovibrio africanus str. Walvis Bay] Length = 285 Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 7/109 (6%) Query: 76 PVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVAR 135 + ++ME P + + K ++ +Q + +V+D +RP++ + Sbjct: 177 DIERLLMEVRGEQAPAEGVAPVVEEKKPKRL------TNIQRMQLVSKVIDEEIRPSLKK 230 Query: 136 DGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV-PEV 183 DGGDI V +S+RGAC GCPSA TLK V L V P++ Sbjct: 231 DGGDIELIDIDGLNVVVSLRGACVGCPSAQLTLKQLVERRLRETVEPDI 279 >gi|258591187|emb|CBE67482.1| conserved protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 197 Score = 86.0 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 38/72 (52%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 V ++ V+D R+ P VA GG + +DGI +++ G C GC A TLK GVA Sbjct: 101 DPVAAAVQRVIDARINPGVAAHGGYVTLLDVKDGIAYITFGGGCHGCGMADVTLKQGVAV 160 Query: 175 ILNHFVPEVKDI 186 + VPE+ + Sbjct: 161 EIQKAVPEIHQV 172 >gi|312141489|ref|YP_004008825.1| fe-s cluster assembly protein nifu-like [Rhodococcus equi 103S] gi|311890828|emb|CBH50147.1| putative Fe-S cluster assembly protein NifU-like [Rhodococcus equi 103S] Length = 311 Score = 86.0 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN 174 V R++ LD+ VRP + GGD+ DG+V L + G+C GCPS++ TL+ V Sbjct: 94 DVETRVRTALDS-VRPYLGSHGGDVELVDVTDDGVVRLRLLGSCHGCPSSAVTLQLAVEG 152 Query: 175 ILNHFVPEVKDIR 187 + PE I Sbjct: 153 AVQAAAPETTAIE 165 >gi|4140376|gb|AAD03815.1| NifU [Trichodesmium erythraeum IMS101] Length = 179 Score = 86.0 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 33/69 (47%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I++VL VRP +A DGGD+ V + ++GAC C + TLK + L V Sbjct: 111 IQQVLQQEVRPVLAEDGGDVELFDVDGDRVLVKLKGACGSCSNVLVTLKGAIEATLKERV 170 Query: 181 PEVKDIRTV 189 E + V Sbjct: 171 SESLVVEAV 179 >gi|325677298|ref|ZP_08156964.1| Rieske family iron-sulfur cluster-binding protein [Rhodococcus equi ATCC 33707] gi|325551995|gb|EGD21691.1| Rieske family iron-sulfur cluster-binding protein [Rhodococcus equi ATCC 33707] Length = 311 Score = 85.6 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN 174 V R++ LD+ VRP + GGD+ DG+V L + G+C GCPS++ TL+ V Sbjct: 94 DVETRVRTALDS-VRPYLGSHGGDVELVDVTDDGVVRLRLLGSCHGCPSSAVTLQLAVEG 152 Query: 175 ILNHFVPEVKDIR 187 + PE I Sbjct: 153 AVQAAAPETTAIE 165 >gi|332520071|ref|ZP_08396535.1| nitrogen-fixing NifU domain protein [Lacinutrix algicola 5H-3-7-4] gi|332044630|gb|EGI80824.1| nitrogen-fixing NifU domain protein [Lacinutrix algicola 5H-3-7-4] Length = 80 Score = 85.6 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASETLKYG 171 + + +++ L+ +RP + DGGDI D V + ++GAC GC TLK G Sbjct: 2 TTEELRLNVEKALEE-IRPFLQSDGGDITLLSIEDDKLVKVQLQGACVGCSVNQMTLKSG 60 Query: 172 VANILNHFVPEVKDIRTV 189 V + + P+++ + + Sbjct: 61 VEMTIKKYAPQIEKVINI 78 >gi|77917669|ref|YP_355484.1| Fe-S cluster assembly protein NifU [Pelobacter carbinolicus DSM 2380] gi|77543752|gb|ABA87314.1| Fe-S cluster assembly protein NifU [Pelobacter carbinolicus DSM 2380] Length = 281 Score = 85.6 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++ I+E+L+ + P + DGGD+ V +++RG CS CP +S TLK+ V L Sbjct: 208 IRLIEEILEREILPPIRSDGGDLELIDIDGSKVLVALRGTCSFCPQSSFTLKHFVEAKLR 267 Query: 178 HFV-PEVKDIRTV 189 FV PE+ ++ V Sbjct: 268 EFVSPEI-EVEEV 279 >gi|89095072|ref|ZP_01167999.1| yhgI protein [Oceanospirillum sp. MED92] gi|89080633|gb|EAR59878.1| yhgI protein [Oceanospirillum sp. MED92] Length = 197 Score = 85.6 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 4/80 (5%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY----RDGIVFLSMRGACSGCPSASETLK 169 DS + ++I +L + + P +A GGD+ I L G C GC + TLK Sbjct: 106 DSPIDEQINYILYSEINPGLAAHGGDVKLMEVVEEEEGHIAVLQFGGGCQGCSAVDMTLK 165 Query: 170 YGVANILNHFVPEVKDIRTV 189 GV L + + +R V Sbjct: 166 DGVEATLVERIDSLVGVRDV 185 >gi|123434403|ref|XP_001308803.1| NifU-like domain containing protein [Trichomonas vaginalis G3] gi|121890501|gb|EAX95873.1| NifU-like domain containing protein [Trichomonas vaginalis G3] Length = 114 Score = 85.6 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 46/85 (54%) Query: 104 DMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPS 163 + + +R+ ++++ +VRP + +GGDI ++G + +S+ GAC+ C S Sbjct: 21 AKAAEKPKVDGDELFKRVNKIIEEKVRPFIRSEGGDIELVDIKNGCMIVSLEGACTHCGS 80 Query: 164 ASETLKYGVANILNHFVPEVKDIRT 188 + TL GV + +PE+++IR Sbjct: 81 KNNTLYNGVLGAVQDEIPEIENIRQ 105 >gi|78776531|ref|YP_392846.1| nitrogen-fixing NifU-like protein [Sulfurimonas denitrificans DSM 1251] gi|78497071|gb|ABB43611.1| Nitrogen-fixing NifU-like protein [Sulfurimonas denitrificans DSM 1251] Length = 91 Score = 85.6 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 +D ++ ++ V+D +VRP++A D GDI F ++ V++ ++GAC GC S+ TL Sbjct: 1 MIPFTDEELMNPVRNVID-KVRPSLALDSGDISFITVKNSKVYIQLKGACVGCASSGTTL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 KYGV L + PE+ I Sbjct: 60 KYGVERQLKMDIHPEITVI 78 >gi|227536025|ref|ZP_03966074.1| NifU family protein [Sphingobacterium spiritivorum ATCC 33300] gi|227244138|gb|EEI94153.1| NifU family protein [Sphingobacterium spiritivorum ATCC 33300] Length = 93 Score = 85.6 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANI 175 + +R+++ LD +RP + DGG++ + + +V L + GAC+ C + T K G+ Sbjct: 3 LHERVEQALDT-IRPYLETDGGNVSLEEITPENVVKLKLTGACASCSMSIMTFKAGLEQA 61 Query: 176 LNHFVPEVKDIRT 188 + VPE+ + Sbjct: 62 IKKAVPEITSVEA 74 >gi|28199845|ref|NP_780159.1| hypothetical protein PD1979 [Xylella fastidiosa Temecula1] gi|182682596|ref|YP_001830756.1| HesB/YadR/YfhF-family protein [Xylella fastidiosa M23] gi|51702170|sp|Q87A52|NFUA_XYLFT RecName: Full=Fe/S biogenesis protein nfuA gi|254767337|sp|B2I9W5|NFUA_XYLF2 RecName: Full=Fe/S biogenesis protein nfuA gi|28057966|gb|AAO29808.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] gi|182632706|gb|ACB93482.1| HesB/YadR/YfhF-family protein [Xylella fastidiosa M23] gi|307578878|gb|ADN62847.1| HesB/YadR/YfhF-family protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 199 Score = 85.6 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVA 173 +++V+R+ V++N + P +A GG + + +G+V L G C GC A TLK GV Sbjct: 107 ASLVERVCWVVENEINPQLASHGGRVEVQEVSAEGVVLLRFGGGCHGCGMADVTLKQGVE 166 Query: 174 NILNHFVPEVKDIRT 188 L V V +R Sbjct: 167 KTLMDRVHGVIAVRD 181 >gi|150025719|ref|YP_001296545.1| NifU-like protein [Flavobacterium psychrophilum JIP02/86] gi|149772260|emb|CAL43736.1| NifU-like protein [Flavobacterium psychrophilum JIP02/86] Length = 79 Score = 85.6 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASETLKYG 171 + + +++ L+ +RP + DGGDI D V + ++GAC+ C + T++ G Sbjct: 2 TPEELTLNVEKALEE-IRPFLNSDGGDIELVSIEDSKHVKVRLQGACNSCSVSQMTMRAG 60 Query: 172 VANILNHFVPEVKDIRTV 189 V + + P+++ + + Sbjct: 61 VETTIKKYAPQIETVVNI 78 >gi|303246717|ref|ZP_07332995.1| Fe-S cluster assembly protein NifU [Desulfovibrio fructosovorans JJ] gi|302492057|gb|EFL51935.1| Fe-S cluster assembly protein NifU [Desulfovibrio fructosovorans JJ] Length = 279 Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ V+R+ +V+D +RP + +DGGDI V +++RGAC GCP ++ TL V Sbjct: 201 TNLERVKRVTQVMDEEIRPNLKKDGGDIELLDIEGKTVLVALRGACQGCPVSNVTLTEFV 260 Query: 173 ANILNHFV-PEVK 184 L V P++ Sbjct: 261 QKRLRELVEPDIT 273 >gi|262368793|ref|ZP_06062122.1| IscR-regulated protein YhgI [Acinetobacter johnsonii SH046] gi|262316471|gb|EEY97509.1| IscR-regulated protein YhgI [Acinetobacter johnsonii SH046] Length = 215 Score = 85.2 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D+++ +RI +L + + P +A GG+ + L G C GC + TL Sbjct: 123 DASIEERITYILQSEINPGLAGHGGNCALVEVVEDEEHGLTAVLKFGGGCQGCSAIDVTL 182 Query: 169 KYGVANILNHFVPEVKDIRT 188 K GV L +PE++ + Sbjct: 183 KQGVETTLQQHIPELRRVID 202 >gi|218887746|ref|YP_002437067.1| Fe-S cluster assembly protein NifU [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758700|gb|ACL09599.1| Fe-S cluster assembly protein NifU [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 281 Score = 85.2 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 41/76 (53%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ +Q + +VL+ +RP + +DGGDI V++++RG C+ CPS+ TL+ V Sbjct: 203 TNVQRMQLVLKVLEGEIRPRLQQDGGDIELVDMDGTTVYVALRGMCTSCPSSRLTLEGFV 262 Query: 173 ANILNHFVPEVKDIRT 188 L V E ++ Sbjct: 263 EKTLRDHVDENIVVKE 278 >gi|126434715|ref|YP_001070406.1| NifU domain-containing protein [Mycobacterium sp. JLS] gi|126234515|gb|ABN97915.1| nitrogen-fixing NifU domain protein [Mycobacterium sp. JLS] Length = 294 Score = 85.2 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 6/121 (4%) Query: 71 EHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDM--GSGDFIESDSAVVQRIKEVLDNR 128 L LG +++ +S DP + + D + + G S V +RI + LD Sbjct: 50 TDLYGAALGRMLDLAVSADPDLVDAVAADPLVASLLLVHGMHPHS---VERRITDALDT- 105 Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 VRP + GGD+ G L G+C CPS++ TL+ V + + PE++ I Sbjct: 106 VRPYLGSHGGDVHLLGVDGDTARLRFAGSCKSCPSSAVTLELAVEDAIRAAAPEIETIEV 165 Query: 189 V 189 V Sbjct: 166 V 166 >gi|326798778|ref|YP_004316597.1| nitrogen-fixing NifU domain-containing protein [Sphingobacterium sp. 21] gi|326549542|gb|ADZ77927.1| nitrogen-fixing NifU domain-containing protein [Sphingobacterium sp. 21] Length = 92 Score = 85.2 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANI 175 + +R++E L+ +RP + DGG++ + + +V L + G+C+ C + T K G+ Sbjct: 3 LQERVEEALNT-LRPYLEADGGNVTIEEITSENVVRLRLLGSCASCSMSIMTFKAGLEQA 61 Query: 176 LNHFVPEVKDIRTV 189 + VPE+ + + Sbjct: 62 IQKAVPEITAVEAI 75 >gi|169633930|ref|YP_001707666.1| putative membrane-bound protein in GNT I transport system (GntY) [Acinetobacter baumannii SDF] gi|254767285|sp|B0VSR5|NFUA_ACIBS RecName: Full=Fe/S biogenesis protein nfuA gi|169152722|emb|CAP01733.1| putative membrane-bound protein in GNT I transport system (GntY) [Acinetobacter baumannii] Length = 212 Score = 85.2 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D+++ +RI VL + P +A GG+ +D L G C GC + TL Sbjct: 120 DASIEERITYVLQAEINPGLAGHGGNCSLVEVQDDPEHGLTAVLKFGGGCQGCSAIDVTL 179 Query: 169 KYGVANILNHFVPEVKDIRT 188 K GV L + E++ + Sbjct: 180 KQGVETTLKEHILELQRVVD 199 >gi|312111050|ref|YP_003989366.1| nitrogen-fixing NifU domain protein [Geobacillus sp. Y4.1MC1] gi|311216151|gb|ADP74755.1| nitrogen-fixing NifU domain protein [Geobacillus sp. Y4.1MC1] Length = 283 Score = 85.2 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + R+ L+ VRP + GG + ++ ++GACSGC ++ TLK GV Sbjct: 87 QDLFTRVAVALEE-VRPYMRSHGGGVELVEVEGKTAYVRLQGACSGCSLSAVTLKNGVEE 145 Query: 175 ILNHFVP 181 + VP Sbjct: 146 AIKARVP 152 >gi|300771723|ref|ZP_07081598.1| NifU family protein [Sphingobacterium spiritivorum ATCC 33861] gi|300761712|gb|EFK58533.1| NifU family protein [Sphingobacterium spiritivorum ATCC 33861] Length = 93 Score = 85.2 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANI 175 + +R+++ LD +RP + DGG++ + + +V L + GAC+ C + T K G+ Sbjct: 3 LHERVEQALDT-IRPYLETDGGNVSLEEITPENVVKLKLTGACASCSMSIMTFKAGLEQA 61 Query: 176 LNHFVPEVKDIRT 188 + VPE+ + Sbjct: 62 IKKAVPEITSVEA 74 >gi|320354022|ref|YP_004195361.1| nitrogen-fixing NifU domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320122524|gb|ADW18070.1| nitrogen-fixing NifU domain protein [Desulfobulbus propionicus DSM 2032] Length = 77 Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 2/76 (2%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVA 173 + + + +VL ++RP + RDGGD+ F D I+ + + GAC GCP + TLK G+ Sbjct: 2 EQLQETVIKVL-AQIRPTLQRDGGDVEFVELGPDQILKVRLTGACQGCPMSRITLKEGIE 60 Query: 174 NILNHFVPEVKDIRTV 189 + +P ++ + V Sbjct: 61 KFVKGELPTIRAVEAV 76 >gi|169333923|ref|ZP_02861116.1| hypothetical protein ANASTE_00309 [Anaerofustis stercorihominis DSM 17244] gi|169259488|gb|EDS73454.1| hypothetical protein ANASTE_00309 [Anaerofustis stercorihominis DSM 17244] Length = 100 Score = 84.8 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 49/75 (65%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 S ++++I++VL+ +VRP++ GGD+V K Y D I+ + + G CSGCP+A T + + Sbjct: 9 SMMIEKIEKVLNEKVRPSLNSHGGDVVIKSYEDNILRIKLIGKCSGCPAARTTNEDLIKI 68 Query: 175 ILNHFVPEVKDIRTV 189 + +PEVKD+ + Sbjct: 69 SVMEEIPEVKDVILI 83 >gi|219113897|ref|XP_002176135.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217402927|gb|EEC42886.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 77 Score = 84.8 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 3/75 (4%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG--IVFLSMRGACSGCPSASETLKYGVAN 174 + + +VLD VRP + DGG++ + V+L + GAC C S++ T++ G+ Sbjct: 1 TIDGVDKVLDE-VRPYLISDGGNVSVESVDADSQTVYLKLEGACGSCSSSTVTMQMGIER 59 Query: 175 ILNHFVPEVKDIRTV 189 +L P ++++ V Sbjct: 60 VLKEKYPNLREVLQV 74 >gi|218667970|ref|YP_002425198.1| iron-sulfur cluster-binding protein, Rieske family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218520183|gb|ACK80769.1| iron-sulfur cluster-binding protein, Rieske family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 296 Score = 84.8 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANI 175 + +RI+ LD+ VRP + GG++ R V L + G+C GCPS+S TL GV Sbjct: 93 LQERIEAALDS-VRPGLEGHGGNVELVELRLPDTVILRLLGSCHGCPSSSLTLSDGVEKA 151 Query: 176 LNHFVPEVKDIR 187 + PE++ I Sbjct: 152 IRDACPEIRHIE 163 >gi|198282994|ref|YP_002219315.1| Rieske (2Fe-2S) domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247515|gb|ACH83108.1| Rieske (2Fe-2S) domain protein [Acidithiobacillus ferrooxidans ATCC 53993] Length = 301 Score = 84.8 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANI 175 + +RI+ LD+ VRP + GG++ R V L + G+C GCPS+S TL GV Sbjct: 98 LQERIEAALDS-VRPGLEGHGGNVELVELRLPDTVILRLLGSCHGCPSSSLTLSDGVEKA 156 Query: 176 LNHFVPEVKDIR 187 + PE++ I Sbjct: 157 IRDACPEIRHIE 168 >gi|121534267|ref|ZP_01666091.1| nitrogen-fixing NifU domain protein [Thermosinus carboxydivorans Nor1] gi|121307037|gb|EAX47955.1| nitrogen-fixing NifU domain protein [Thermosinus carboxydivorans Nor1] Length = 98 Score = 84.8 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 I++VLD +VRP++ GGDI + DG + + + GACS CP A +TL V L Sbjct: 8 IQQVLDEKVRPSLLSHGGDISLQEITDDGYIKVRLTGACSTCPGAQQTLAEVVEAALRDA 67 Query: 180 VPEVKDIRTV 189 P+++ + V Sbjct: 68 CPDLQGVIPV 77 >gi|91201114|emb|CAJ74173.1| strongly similar to iron sulfur [Fe-S] cofactor protein NifU [Candidatus Kuenenia stuttgartiensis] Length = 284 Score = 84.8 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 41/77 (53%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ ++ ++E ++ +RPA+ DGGDI V +S RG+CS CPS+ TLK V Sbjct: 206 TNIQKMKLVQETIEREIRPALLADGGDIELIDIDGDRVMVSFRGSCSACPSSGVTLKSTV 265 Query: 173 ANILNHFVPEVKDIRTV 189 L FV + + V Sbjct: 266 EAKLREFVTDTLIVEEV 282 >gi|163787250|ref|ZP_02181697.1| NifU-like protein [Flavobacteriales bacterium ALC-1] gi|159877138|gb|EDP71195.1| NifU-like protein [Flavobacteriales bacterium ALC-1] Length = 79 Score = 84.8 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASETLKYG 171 S + +++ LD +RP + DGGDI D V + + GAC+ C TLK G Sbjct: 2 SSEELRLNVEKALDE-IRPFLQSDGGDIALLSIEDDKFVKVQLEGACTSCSVNQMTLKSG 60 Query: 172 VANILNHFVPEVKDIRTV 189 V + + P+++ + V Sbjct: 61 VEMTIKKYAPQIEKVINV 78 >gi|312132200|ref|YP_003999540.1| nitrogeN-fixing nifu domain protein [Leadbetterella byssophila DSM 17132] gi|311908746|gb|ADQ19187.1| nitrogen-fixing NifU domain protein [Leadbetterella byssophila DSM 17132] Length = 83 Score = 84.8 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIV-FKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 + ++++ LDN +RP + DGG++ + D +V L G+C CP +S T K G+ Sbjct: 2 EDLNVKVEQALDN-IRPYLIADGGNVKVLEITEDKVVKLEFTGSCGSCPMSSMTFKAGLE 60 Query: 174 NILNHFVPEVKDIRTV 189 + VPE+K + V Sbjct: 61 EAILKNVPEIKSVEAV 76 >gi|149278153|ref|ZP_01884291.1| hypothetical protein PBAL39_11367 [Pedobacter sp. BAL39] gi|149230919|gb|EDM36300.1| hypothetical protein PBAL39_11367 [Pedobacter sp. BAL39] Length = 100 Score = 84.8 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYG 171 + + Q++++ L+ +RP + DGG++ + + +V L + G C C + T+K G Sbjct: 18 TKMDLTQQVEQALET-IRPYLIADGGNVEIEEITAENVVKLKLLGNCGSCKMSFMTMKAG 76 Query: 172 VANILNHFVPEVKDIRTV 189 + + VP++ + V Sbjct: 77 IEQAILKAVPQITSVVAV 94 >gi|149195166|ref|ZP_01872257.1| Nitrogen-fixing NifU-like protein [Caminibacter mediatlanticus TB-2] gi|149134718|gb|EDM23203.1| Nitrogen-fixing NifU-like protein [Caminibacter mediatlanticus TB-2] Length = 98 Score = 84.8 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASET 167 D S+ + + + V++ +RP + DGGD+ + IVF+ ++G C GC SA T Sbjct: 2 ADIPFSNEDLKEAVAGVIEE-IRPMLQMDGGDVKLIDVKKPIVFVQLQGGCVGCASAGAT 60 Query: 168 LKYGVANILNHFV 180 LKYG+ L + Sbjct: 61 LKYGIEKALKEKI 73 >gi|331700077|ref|YP_004336316.1| nitrogen-fixing NifU domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326954766|gb|AEA28463.1| nitrogen-fixing NifU domain-containing protein [Pseudonocardia dioxanivorans CB1190] Length = 306 Score = 84.5 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 127 NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 VRP + GGD+ F DG+ ++ + GAC+GC ++ TL+ V L VP ++ + Sbjct: 113 TTVRPQLQSHGGDVAFAHVADGVAYVRLEGACNGCSMSAVTLRNLVEEALVAQVPAIRSV 172 Query: 187 R 187 Sbjct: 173 E 173 >gi|139438470|ref|ZP_01771986.1| Hypothetical protein COLAER_00976 [Collinsella aerofaciens ATCC 25986] gi|133776009|gb|EBA39829.1| Hypothetical protein COLAER_00976 [Collinsella aerofaciens ATCC 25986] Length = 67 Score = 84.5 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 140 IVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 + + G D G+V L ++GAC+GCP +S TL G+ IL VP V + V Sbjct: 1 MEYVGVDDEGVVKLELQGACAGCPMSSLTLSMGIERILKEHVPGVTRVEQV 51 >gi|223038428|ref|ZP_03608722.1| NifU family protein [Campylobacter rectus RM3267] gi|222880285|gb|EEF15372.1| NifU family protein [Campylobacter rectus RM3267] Length = 146 Score = 84.5 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 +D +++ + L +V P + DGG + G ++G +++ + G C GC +++ TL Sbjct: 58 MIPFTDEELLKPVSASLQ-KVLPMLENDGGGMELLGIKNGKIYVRLTGHCHGCAASTTTL 116 Query: 169 KYGVANILNHFV-PEVKDI 186 KYG+ L + PE++ I Sbjct: 117 KYGIERQLRIDIHPELEVI 135 >gi|315283493|ref|ZP_07871670.1| nitrogen fixation protein NifU [Listeria marthii FSL S4-120] gi|313612862|gb|EFR86827.1| nitrogen fixation protein NifU [Listeria marthii FSL S4-120] Length = 78 Score = 84.5 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + + L + RP + RDGGD +DGIV + + GAC CPS+ TLK G+ L Sbjct: 7 AEVDKAL-KKFRPFLVRDGGDYELVEVTQDGIVKIKLLGACETCPSSDMTLKMGIELTLA 65 Query: 178 HFVPEVKDIRTV 189 + K++ V Sbjct: 66 EKIIGFKEVVQV 77 >gi|165909938|gb|ABY73882.1| thioredoxin-like protein [Flammeovirga yaeyamensis] Length = 233 Score = 84.5 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETL 168 D++V + I VL + + P +A GG+ ++ L G C GC + TL Sbjct: 141 DASVEEHITYVLQSEINPGLAGHGGNCALVEVKEDPEKGLTAVLKFGGGCQGCSAIDITL 200 Query: 169 KYGVANILNHFVPEVKDIRT 188 K GV L +PE+ ++ Sbjct: 201 KQGVETTLKQHIPELMNVVD 220 >gi|116515272|ref|YP_802901.1| GNT I transport systemmembrane-bound protein [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285332|sp|Q056Z1|NFUA_BUCCC RecName: Full=Fe/S biogenesis protein nfuA gi|116257126|gb|ABJ90808.1| GNT I transport systemmembrane-bound protein [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 193 Score = 84.5 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVA 173 S + IK L ++ P + GG + D G+VFL G C+GC TLK G+ Sbjct: 107 SQLQNSIKNFLTTQINPKLLLHGGSVALYDITDSGVVFLKFSGGCNGCSMIDITLKKGIE 166 Query: 174 NILNHFVPEVKDIRTV 189 L PE+ + V Sbjct: 167 KKLIKNFPEISSVEDV 182 >gi|108799109|ref|YP_639306.1| nitrogen-fixing NifU-like protein [Mycobacterium sp. MCS] gi|119868224|ref|YP_938176.1| NifU domain-containing protein [Mycobacterium sp. KMS] gi|108769528|gb|ABG08250.1| nitrogen-fixing NifU-like protein [Mycobacterium sp. MCS] gi|119694313|gb|ABL91386.1| nitrogen-fixing NifU domain protein [Mycobacterium sp. KMS] Length = 294 Score = 84.5 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 6/121 (4%) Query: 71 EHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDM--GSGDFIESDSAVVQRIKEVLDNR 128 L LG +++ +S DP + + D + + G S V +RI + LD Sbjct: 50 TDLYGAALGRMLDLAVSVDPDLVDAVAADPLVASLLLVHGMHPHS---VERRITDALDT- 105 Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 VRP + GGD+ G L G+C CPS++ TL+ V + + PE++ I Sbjct: 106 VRPYLGSHGGDVHLLGVDGDTARLRFAGSCKSCPSSAVTLELAVEDAIRAAAPEIETIEV 165 Query: 189 V 189 V Sbjct: 166 V 166 >gi|296271179|ref|YP_003653811.1| nitrogen-fixing NifU domain-containing protein [Thermobispora bispora DSM 43833] gi|296093966|gb|ADG89918.1| nitrogen-fixing NifU domain protein [Thermobispora bispora DSM 43833] Length = 289 Score = 84.5 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%) Query: 127 NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 + +RP V GGD+ DG+ ++ ++GAC+GC + + L+ G+ L VP + + Sbjct: 99 DAIRPMVRSHGGDVELVRVEDGVAYVRLKGACTGCSAPAVALREGIEEALIERVPAITRV 158 Query: 187 R 187 Sbjct: 159 E 159 >gi|239906346|ref|YP_002953087.1| nitrogen fixation protein NifU [Desulfovibrio magneticus RS-1] gi|239796212|dbj|BAH75201.1| nitrogen fixation protein NifU [Desulfovibrio magneticus RS-1] Length = 281 Score = 84.1 bits (207), Expect = 8e-15, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 2/104 (1%) Query: 83 EHFISGDPIIHNGGLGDMKLDDMG-SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIV 141 + I+ + K + ++ ++ + +V++ +RP + +DGGDI Sbjct: 173 DCLEKLAAILADELGQAAKKPLVELEVKRPMTNLERMKLVTKVMEEEIRPNLKKDGGDIE 232 Query: 142 FKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV-PEVK 184 VF+S+RGAC GCPS++ TL V L V P + Sbjct: 233 LVDIDGQTVFVSLRGACKGCPSSNVTLTEFVQKRLQELVEPGIT 276 >gi|123976981|ref|XP_001314690.1| NifU-like domain containing protein [Trichomonas vaginalis G3] gi|121897307|gb|EAY02432.1| NifU-like domain containing protein [Trichomonas vaginalis G3] Length = 103 Score = 84.1 bits (207), Expect = 8e-15, Method: Composition-based stats. Identities = 30/81 (37%), Positives = 42/81 (51%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + F ++ ++ V+D RVRP + DGGDIV K DGIV + + G CSGCPS Sbjct: 15 ANFFAKATKEFFDKVNAVIDERVRPVLQMDGGDIVLKDITDGIVSVQLTGHCSGCPSRKN 74 Query: 167 TLKYGVANILNHFVPEVKDIR 187 TL G+ L E + + Sbjct: 75 TLNAGILGCLQEEFGEKEIVE 95 >gi|16804435|ref|NP_465920.1| hypothetical protein lmo2397 [Listeria monocytogenes EGD-e] gi|47095874|ref|ZP_00233478.1| NifU family protein [Listeria monocytogenes str. 1/2a F6854] gi|224500156|ref|ZP_03668505.1| hypothetical protein LmonF1_10934 [Listeria monocytogenes Finland 1988] gi|224503455|ref|ZP_03671762.1| hypothetical protein LmonFR_13257 [Listeria monocytogenes FSL R2-561] gi|254827975|ref|ZP_05232662.1| NifU family protein [Listeria monocytogenes FSL N3-165] gi|254831180|ref|ZP_05235835.1| hypothetical protein Lmon1_07458 [Listeria monocytogenes 10403S] gi|254900468|ref|ZP_05260392.1| hypothetical protein LmonJ_11657 [Listeria monocytogenes J0161] gi|254913294|ref|ZP_05263306.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254937675|ref|ZP_05269372.1| NifU family protein [Listeria monocytogenes F6900] gi|284802839|ref|YP_003414704.1| hypothetical protein LM5578_2596 [Listeria monocytogenes 08-5578] gi|284995980|ref|YP_003417748.1| hypothetical protein LM5923_2545 [Listeria monocytogenes 08-5923] gi|16411885|emb|CAD00475.1| lmo2397 [Listeria monocytogenes EGD-e] gi|47015751|gb|EAL06680.1| NifU family protein [Listeria monocytogenes str. 1/2a F6854] gi|258600358|gb|EEW13683.1| NifU family protein [Listeria monocytogenes FSL N3-165] gi|258610275|gb|EEW22883.1| NifU family protein [Listeria monocytogenes F6900] gi|284058401|gb|ADB69342.1| hypothetical protein LM5578_2596 [Listeria monocytogenes 08-5578] gi|284061447|gb|ADB72386.1| hypothetical protein LM5923_2545 [Listeria monocytogenes 08-5923] gi|293591295|gb|EFF99629.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 78 Score = 84.1 bits (207), Expect = 8e-15, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + + L + RP + RDGGD +DGIV + + GAC CPS+ TLK G+ L Sbjct: 7 AEVDKAL-KKFRPFLVRDGGDYELIEVTQDGIVKIKLLGACETCPSSDMTLKMGIELTLA 65 Query: 178 HFVPEVKDIRTV 189 + K++ V Sbjct: 66 EKIIGFKEVVQV 77 >gi|119509243|ref|ZP_01628393.1| Nitrogen-fixing NifU-like protein [Nodularia spumigena CCY9414] gi|119466085|gb|EAW46972.1| Nitrogen-fixing NifU-like protein [Nodularia spumigena CCY9414] Length = 277 Score = 84.1 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSAS 165 + +++RI L+ VRP + GD+ F + V + + G+CS CP+++ Sbjct: 75 HELIKPPQAPLIERINTALEE-VRPGLKSHDGDVEFVAIKPPDTVEVKLIGSCSSCPTST 133 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TL V + + PE+ + V Sbjct: 134 LTLTQSVEQAIKNHCPEITKVVAV 157 >gi|154173987|ref|YP_001409127.1| NifU family protein [Campylobacter curvus 525.92] gi|112802254|gb|EAT99598.1| NifU family protein [Campylobacter curvus 525.92] Length = 89 Score = 84.1 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD +++ + L +V P + DGG + G ++G ++L + G C GC +++ TL Sbjct: 1 MIPFSDEELLKPVTASLQ-KVLPMLENDGGGMELLGIKNGKIYLRLTGHCHGCAASTTTL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 KYG+ L + PE++ + Sbjct: 60 KYGIERQLRIDIHPELEVV 78 >gi|16801558|ref|NP_471826.1| hypothetical protein lin2496 [Listeria innocua Clip11262] gi|16415018|emb|CAC97723.1| lin2496 [Listeria innocua Clip11262] gi|313617409|gb|EFR89807.1| YutI [Listeria innocua FSL S4-378] gi|313622571|gb|EFR92972.1| YutI [Listeria innocua FSL J1-023] Length = 78 Score = 84.1 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILN 177 + + L + RP + RDGGD DGIV + + GAC CPS+ TLK G+ L Sbjct: 7 AEVDKAL-KKFRPFLVRDGGDYELVEVTPDGIVKIKLLGACETCPSSDMTLKMGIELTLA 65 Query: 178 HFVPEVKDIRTV 189 + K++ V Sbjct: 66 EKIIGFKEVVQV 77 >gi|261886108|ref|ZP_06010147.1| NifU family protein [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 88 Score = 84.1 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD +++ +KE L + P + +DGG + G ++G+V++ + G C GC ++S+TL Sbjct: 1 MIPFSDEELLEPVKESL-KVIMPMLEQDGGGMELLGIKNGVVYVRLTGHCHGCAASSQTL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 KYG L+ + P++ + Sbjct: 60 KYGAERQLSVDIHPDLSAV 78 >gi|61806099|ref|YP_214459.1| NifU-like protein [Prochlorococcus phage P-SSM2] gi|61374608|gb|AAX44605.1| NifU-like protein [Prochlorococcus phage P-SSM2] gi|265525310|gb|ACY76107.1| NifU domain-containing protein [Prochlorococcus phage P-SSM2] Length = 96 Score = 83.7 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 3/77 (3%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGV 172 + + VL+ + P V DGG + F + G V + + GAC C ++ TLK G+ Sbjct: 20 ELTEENVVRVLEE-LAPYVEADGGFLQFVEIEEETGYVKVRLGGACETCAMSAMTLKQGI 78 Query: 173 ANILNHFVPEVKDIRTV 189 + +P+ + V Sbjct: 79 EKKVMSEIPDCVGVVQV 95 >gi|227496737|ref|ZP_03927011.1| NifU domain protein [Actinomyces urogenitalis DSM 15434] gi|226833752|gb|EEH66135.1| NifU domain protein [Actinomyces urogenitalis DSM 15434] Length = 177 Score = 83.7 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 67/184 (36%), Gaps = 20/184 (10%) Query: 7 DTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGI-ASVYFGYDFI-TVG 64 TP+PA L++ V+ +G + F A + + G+ A + + T+ Sbjct: 10 TTPDPAVLRW-----VVPDGLLPF-TGSVARAPRMLQALLD-DGVLAGLEVVPGAVLTLL 62 Query: 65 KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEV 124 W V +++ G P G + + D + +E+ Sbjct: 63 APGRIWSEAGSAVRSALVDAL--GIPGSWEAAPGAVGVGP---------DEVLEAAAREI 111 Query: 125 LDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVK 184 + V GG + DG+V +++ GAC CP+A T+ ++L P + Sbjct: 112 AEGPVGQIARAHGGSFTVQRVADGVVKVALEGACQDCPAAVVTMHARFEHLLRRRCPWLV 171 Query: 185 DIRT 188 +R Sbjct: 172 SVRE 175 >gi|46908571|ref|YP_014960.1| NifU family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47092981|ref|ZP_00230761.1| NifU family protein [Listeria monocytogenes str. 4b H7858] gi|217963499|ref|YP_002349177.1| hypothetical protein LMHCC_0201 [Listeria monocytogenes HCC23] gi|226224948|ref|YP_002759055.1| NifU family protein [Listeria monocytogenes Clip81459] gi|254825479|ref|ZP_05230480.1| NifU family protein [Listeria monocytogenes FSL J1-194] gi|254853597|ref|ZP_05242945.1| NifU family protein [Listeria monocytogenes FSL R2-503] gi|254933176|ref|ZP_05266535.1| NifU family protein [Listeria monocytogenes HPB2262] gi|254994154|ref|ZP_05276344.1| NifU family protein [Listeria monocytogenes FSL J2-064] gi|255521513|ref|ZP_05388750.1| NifU family protein [Listeria monocytogenes FSL J1-175] gi|290894179|ref|ZP_06557149.1| NifU family protein [Listeria monocytogenes FSL J2-071] gi|300765271|ref|ZP_07075256.1| NifU family protein [Listeria monocytogenes FSL N1-017] gi|46881843|gb|AAT05137.1| NifU family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47018635|gb|EAL09388.1| NifU family protein [Listeria monocytogenes str. 4b H7858] gi|217332769|gb|ACK38563.1| conserved domain protein [Listeria monocytogenes HCC23] gi|225877410|emb|CAS06124.1| Putative NifU family protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606971|gb|EEW19579.1| NifU family protein [Listeria monocytogenes FSL R2-503] gi|290556242|gb|EFD89786.1| NifU family protein [Listeria monocytogenes FSL J2-071] gi|293584734|gb|EFF96766.1| NifU family protein [Listeria monocytogenes HPB2262] gi|293594721|gb|EFG02482.1| NifU family protein [Listeria monocytogenes FSL J1-194] gi|300514092|gb|EFK41154.1| NifU family protein [Listeria monocytogenes FSL N1-017] gi|307571927|emb|CAR85106.1| NifU family protein [Listeria monocytogenes L99] gi|313607074|gb|EFR83599.1| nitrogen fixation protein NifU [Listeria monocytogenes FSL F2-208] gi|328471461|gb|EGF42355.1| NifU family protein [Listeria monocytogenes 220] gi|332312829|gb|EGJ25924.1| Nitrogen-fixing NifU protein [Listeria monocytogenes str. Scott A] Length = 78 Score = 83.7 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + + L + RP + RDGGD +DG+V + + GAC CPS+ TLK G+ L Sbjct: 7 AEVDKAL-KKFRPFLVRDGGDYELIEVTQDGVVKIKLLGACETCPSSDMTLKMGIELTLA 65 Query: 178 HFVPEVKDIRTV 189 + K++ V Sbjct: 66 EKIIGFKEVVQV 77 >gi|317495423|ref|ZP_07953792.1| NifU domain-containing protein [Gemella moribillum M424] gi|316914482|gb|EFV35959.1| NifU domain-containing protein [Gemella moribillum M424] Length = 84 Score = 83.7 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 +V +IK L+ ++RP + DGG+I F Y+DGI+ + G C+ C + TLK+ + Sbjct: 7 DIVDKIKLELE-KIRPKLIADGGNIEFINYKDGILKIRFLGECAHCELSHITLKFAIEKN 65 Query: 176 LNHFVPEVKDIRTV 189 + +PEV + V Sbjct: 66 IKEKIPEVNKVIEV 79 >gi|281356627|ref|ZP_06243118.1| nitrogen-fixing NifU domain protein [Victivallis vadensis ATCC BAA-548] gi|281316754|gb|EFB00777.1| nitrogen-fixing NifU domain protein [Victivallis vadensis ATCC BAA-548] Length = 76 Score = 83.7 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 3/76 (3%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + ++I E L++ +R + DGGD+ V L ++GAC GCP A+ T+K G+ Sbjct: 2 DELTKKITERLES-LRVHLQADGGDLEIVAIEGKTVKLKLQGACGGCPHAAMTIKGGLER 60 Query: 175 ILNHFV-PEVKDIRTV 189 IL + PE+ I V Sbjct: 61 ILREEIDPEIV-IERV 75 >gi|320354901|ref|YP_004196240.1| Fe-S cluster assembly protein NifU [Desulfobulbus propionicus DSM 2032] gi|320123403|gb|ADW18949.1| Fe-S cluster assembly protein NifU [Desulfobulbus propionicus DSM 2032] Length = 278 Score = 83.7 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 44/99 (44%) Query: 90 PIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI 149 ++ G + + +++I+EV++ ++P + +DGGDI Sbjct: 178 ALLAETVEGQPAQPFGATKKKRMTSLEKIKKIEEVIEREIKPTLKKDGGDIQLIDVDGDF 237 Query: 150 VFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 V +S+RG+C+ C S+ TLK V L V E + Sbjct: 238 VTVSLRGSCANCYSSRTTLKEYVEKKLREQVLESLIVEE 276 >gi|269792680|ref|YP_003317584.1| nitrogen-fixing NifU domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100315|gb|ACZ19302.1| nitrogen-fixing NifU domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 76 Score = 83.7 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 2/73 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASETLKYGVAN 174 + ++IK++++ +RPA+ GGDI FKG+ G+V +++ GAC CP A ETL+ V Sbjct: 1 MEEQIKKLIEEEIRPALQSHGGDIDFKGFDQASGVVTVALTGACGTCPFAQETLRVQVEQ 60 Query: 175 ILNHFVPEVKDIR 187 ++ P V ++ Sbjct: 61 VIRRSFPSVTAVK 73 >gi|86743152|ref|YP_483552.1| HesB/YadR/YfhF [Frankia sp. CcI3] gi|86570014|gb|ABD13823.1| HesB/YadR/YfhF [Frankia sp. CcI3] Length = 206 Score = 83.7 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 8/112 (7%) Query: 85 FISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG 144 F +P + S + +D+ + ++++E+++ +RP + DGGD Sbjct: 95 FTFQNPNATSSCGCGTSFGASDSTERTAADARLREQVEEIMEE-IRPFLRGDGGDAEVVA 153 Query: 145 Y-----RDGI--VFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 G V L + GAC GC SA+ TL + + L +PE+ + V Sbjct: 154 TLAGNGEPGTAEVHLRLTGACGGCSSATATLTGVIESRLKEALPEIGRVALV 205 >gi|255529963|ref|YP_003090335.1| nitrogen-fixing NifU domain-containing protein [Pedobacter heparinus DSM 2366] gi|255342947|gb|ACU02273.1| nitrogen-fixing NifU domain protein [Pedobacter heparinus DSM 2366] Length = 81 Score = 83.7 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANI 175 + +++++ L+ +RP + DGGD+ + + +V L + G C C + T+K G+ Sbjct: 3 LTEQVEQALET-IRPYLIADGGDVAIEEITPENVVRLKLLGNCGSCKMSFMTMKAGIEQA 61 Query: 176 LNHFVPEVKDIRTV 189 + VP++ + V Sbjct: 62 IMKSVPQITAVEAV 75 >gi|270308880|ref|YP_003330938.1| NifU domain protein [Dehalococcoides sp. VS] gi|270154772|gb|ACZ62610.1| NifU domain protein [Dehalococcoides sp. VS] Length = 72 Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 49/72 (68%), Gaps = 1/72 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++++++ VLD ++RPA+ DGG++ DG+V + + GAC+GCP ++ TLK G+ IL Sbjct: 1 MLEKVEAVLD-KIRPALEADGGNVELVDVVDGVVKVKLVGACAGCPMSTMTLKNGIERIL 59 Query: 177 NHFVPEVKDIRT 188 +PEVK++ Sbjct: 60 KREIPEVKEVVA 71 >gi|315304549|ref|ZP_07874802.1| nitrogen fixation protein NifU [Listeria ivanovii FSL F6-596] gi|313627083|gb|EFR95963.1| nitrogen fixation protein NifU [Listeria ivanovii FSL F6-596] Length = 78 Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILN 177 + + L + RP + RDGGD DG V + + GAC CPS+ TLK G+ L+ Sbjct: 7 AEVDKAL-KKFRPFLVRDGGDYELVEVTPDGTVKIKLLGACETCPSSDMTLKMGIELTLS 65 Query: 178 HFVPEVKDIRTV 189 + K++ V Sbjct: 66 EKIIGFKEVVQV 77 >gi|119484429|ref|ZP_01619046.1| hypothetical protein L8106_01887 [Lyngbya sp. PCC 8106] gi|119457903|gb|EAW39026.1| hypothetical protein L8106_01887 [Lyngbya sp. PCC 8106] Length = 289 Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSAS 165 + RI++ L+ VRP + GD+ + V + + G CS CP+++ Sbjct: 86 HELIKPPQPPLENRIQQALEE-VRPGLKSHSGDVELVAIKLPDTVEVKLVGTCSNCPAST 144 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TLK GV + + PE+ + +V Sbjct: 145 LTLKQGVEQAIKNHCPEINHVISV 168 >gi|319952564|ref|YP_004163831.1| nitrogen-fixing nifu domain-containing protein [Cellulophaga algicola DSM 14237] gi|319421224|gb|ADV48333.1| nitrogen-fixing NifU domain-containing protein [Cellulophaga algicola DSM 14237] Length = 79 Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASETLKYG 171 + + +++ L+ +RP + DGGDI + V + + GAC GC TLK G Sbjct: 2 TSEELRLNVEKALEE-IRPFLQSDGGDISLVSIDNDTSVKVRLEGACIGCTVNQMTLKSG 60 Query: 172 VANILNHFVPEVKDI 186 V + + P+++++ Sbjct: 61 VEMTIKKYAPQIEEV 75 >gi|73749405|ref|YP_308644.1| nifU protein,-like protein [Dehalococcoides sp. CBDB1] gi|147670014|ref|YP_001214832.1| NifU domain-containing protein [Dehalococcoides sp. BAV1] gi|289433363|ref|YP_003463236.1| nitrogen-fixing NifU domain protein [Dehalococcoides sp. GT] gi|73661121|emb|CAI83728.1| nifU protein, homolog [Dehalococcoides sp. CBDB1] gi|146270962|gb|ABQ17954.1| nitrogen-fixing NifU domain protein [Dehalococcoides sp. BAV1] gi|288947083|gb|ADC74780.1| nitrogen-fixing NifU domain protein [Dehalococcoides sp. GT] Length = 72 Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 49/72 (68%), Gaps = 1/72 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++++++ VLD ++RPA+ DGG++ DG+V + + GAC+GCP ++ TLK G+ IL Sbjct: 1 MLEKVEAVLD-KIRPALEADGGNVELVDVVDGVVKVKLVGACAGCPMSTMTLKNGIERIL 59 Query: 177 NHFVPEVKDIRT 188 +PE+K++ Sbjct: 60 KREIPEIKEVVA 71 >gi|72537505|gb|AAZ73682.1| hypothetical protein [Lyngbya majuscula CCAP 1446/4] Length = 289 Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVAN 174 + RI++ L+ VRP + GD+ + V + + G CS CP+++ TLK GV Sbjct: 95 PLETRIQQALEE-VRPGLKSHSGDVELVAVKLPDTVEVKLVGTCSNCPASTLTLKQGVEQ 153 Query: 175 ILNHFVPEVKDIRTV 189 + + PE++ + +V Sbjct: 154 AIKNHCPEIQHVISV 168 >gi|157165751|ref|YP_001467687.1| hypothetical protein CCC13826_1742 [Campylobacter concisus 13826] gi|112800805|gb|EAT98149.1| NifU family protein [Campylobacter concisus 13826] Length = 91 Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 3/82 (3%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD +++ + L +V P + DGG + G ++G +++ + G C GC +++ TL Sbjct: 1 MIPFSDEELLKPVTASLQ-KVLPMLENDGGGMELLGIKNGKIYVRLTGHCHGCAASTTTL 59 Query: 169 KYGVANILNHFV-PEVKDIRTV 189 KYG+ L + PE+ ++ V Sbjct: 60 KYGIERQLRIDIHPEL-EVINV 80 >gi|218780491|ref|YP_002431809.1| Fe-S cluster assembly protein NifU [Desulfatibacillum alkenivorans AK-01] gi|218761875|gb|ACL04341.1| Fe-S cluster assembly protein NifU [Desulfatibacillum alkenivorans AK-01] Length = 271 Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 36/72 (50%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +Q I+E L+ VRP + +DGGDI V + ++G CS C ++ TLK V L Sbjct: 200 IQLIQETLEREVRPTLKQDGGDIELVDVDGDKVLVRLQGRCSSCQASQATLKGHVEAKLR 259 Query: 178 HFVPEVKDIRTV 189 V + + V Sbjct: 260 ELVVDTLVVEEV 271 >gi|289435662|ref|YP_003465534.1| NifU family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171906|emb|CBH28452.1| NifU family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313632102|gb|EFR99193.1| nitrogen fixation protein NifU [Listeria seeligeri FSL N1-067] gi|313636487|gb|EFS02228.1| nitrogen fixation protein NifU [Listeria seeligeri FSL S4-171] Length = 78 Score = 83.3 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILN 177 + + L + RP + RDGGD DG V + + GAC CPS+ TLK G+ L Sbjct: 7 AEVDKAL-KKFRPFLVRDGGDYELVEVTPDGTVKIKLLGACETCPSSDMTLKMGIELTLA 65 Query: 178 HFVPEVKDIRTV 189 + K++ V Sbjct: 66 EKIIGFKEVVQV 77 >gi|327400610|ref|YP_004341449.1| nitrogen-fixing NifU domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316118|gb|AEA46734.1| nitrogen-fixing NifU domain-containing protein [Archaeoglobus veneficus SNP6] Length = 79 Score = 83.3 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Query: 129 VRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +RPA+ +DGG+I + G+V + + GAC GCP + TL V + VPEVK + Sbjct: 17 IRPALIQDGGNIAVVDVDEESGVVKVQLLGACYGCPLSQVTLAMFVEQRIKQRVPEVKKV 76 Query: 187 RTV 189 V Sbjct: 77 IPV 79 >gi|160915579|ref|ZP_02077790.1| hypothetical protein EUBDOL_01587 [Eubacterium dolichum DSM 3991] gi|158432699|gb|EDP10988.1| hypothetical protein EUBDOL_01587 [Eubacterium dolichum DSM 3991] Length = 76 Score = 83.3 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++ IK V+ N++RP + RDGGD+ F + +GIV + + GAC GC S ET+ G+ IL Sbjct: 5 IEEIKHVI-NKIRPYIQRDGGDVEFVSFDNGIVAVRLLGACIGCASVDETISGGIEAILL 63 Query: 178 HFVPEVKDIRTV 189 V V + V Sbjct: 64 DEVAGVSKVILV 75 >gi|217979852|ref|YP_002363999.1| Rieske (2Fe-2S) domain protein [Methylocella silvestris BL2] gi|217505228|gb|ACK52637.1| Rieske (2Fe-2S) domain protein [Methylocella silvestris BL2] Length = 290 Score = 82.9 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + +RI+ L+ VRP +A GGD+ R + + G+C GCP++S T GV + Sbjct: 94 LSERIESALEG-VRPMLAAHGGDVELVSVRPPAIEVRFVGSCDGCPASSMTFHAGVKKAV 152 Query: 177 NHFVPEVKDIRTV 189 PE+ DI V Sbjct: 153 AEACPEITDILQV 165 >gi|116873760|ref|YP_850541.1| NifU family protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742638|emb|CAK21762.1| NifU family protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 78 Score = 82.9 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + + L + RP + RDGGD DGIV + + GAC CPS+ TLK G+ L Sbjct: 8 EVDKAL-KKFRPFLVRDGGDYELIEVTPDGIVKIKLLGACETCPSSDMTLKMGIELTLAE 66 Query: 179 FVPEVKDIRTV 189 + K++ V Sbjct: 67 KIIGFKEVVQV 77 >gi|167747967|ref|ZP_02420094.1| hypothetical protein ANACAC_02699 [Anaerostipes caccae DSM 14662] gi|167652617|gb|EDR96746.1| hypothetical protein ANACAC_02699 [Anaerostipes caccae DSM 14662] Length = 116 Score = 82.9 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 45/73 (61%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +++ I++VL+ VRP + G++ Y++GI+ + + G C GCPSA+ T + +A + Sbjct: 18 MLREIEKVLEEDVRPYLLEHEGNVRISEYKEGILKVRLTGQCCGCPSAALTTEELIAEAV 77 Query: 177 NHFVPEVKDIRTV 189 +PEVKD+ V Sbjct: 78 KKKIPEVKDVVLV 90 >gi|289209036|ref|YP_003461102.1| nitrogen-fixing NifU domain protein [Thioalkalivibrio sp. K90mix] gi|288944667|gb|ADC72366.1| nitrogen-fixing NifU domain protein [Thioalkalivibrio sp. K90mix] Length = 299 Score = 82.9 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 6/93 (6%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLS 153 + + D+ + I+ D+ ++ ++ R + +DGGDI F V + Sbjct: 209 AQTFAEREAADVPADGPIDEDA-----VRAAIEE-ARRILMQDGGDIEFVELDGRTVRVR 262 Query: 154 MRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 ++GAC GCP ++ LK V ++ P V + Sbjct: 263 LKGACVGCPRSTLDLKNVVERLVRSRAPGVASV 295 >gi|256823357|ref|YP_003147320.1| IscR-regulated protein YhgI [Kangiella koreensis DSM 16069] gi|256796896|gb|ACV27552.1| IscR-regulated protein YhgI [Kangiella koreensis DSM 16069] Length = 192 Score = 82.9 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 64/182 (35%), Gaps = 16/182 (8%) Query: 21 VVLVEGAIHFSNAKEAEISP-LASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPP-V 77 + HF + P R+F + PG + G + + L+ Sbjct: 3 TISEAAQEHFRRLLAGQEEPDTGIRVFVVNPGTSHAECGVSYCPPDAIEDTDTELKFDGF 62 Query: 78 LGMIMEHFISGDPIIHNGGLGDMKLDDMG---------SGDFIESDSAVVQRIKEVLDNR 128 I E P + + K G ++ D+ RI+ L++ Sbjct: 63 SAFIDE---DSAPYLDEAEIDYSKEQTGGQLTLKAPNAKARKVDDDAPATDRIRYYLESE 119 Query: 129 VRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 + P +A GG + + + GI L G C GC TLK G+ L VPEVK ++ Sbjct: 120 INPELANHGGQVSLVEFTQSGIAVLQFGGGCQGCGMVDVTLKEGIEKTLIERVPEVKGVK 179 Query: 188 TV 189 V Sbjct: 180 DV 181 >gi|145350853|ref|XP_001419810.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580042|gb|ABO98103.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 73 Score = 82.9 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++ + E LD VRP + DGG++ I+ + + GAC C S+S T+K G+ +L Sbjct: 1 TMENVDEALDE-VRPYLVADGGNVELVKIEGKIIVVRLNGACGTCASSSATMKGGIEKLL 59 Query: 177 NHFVPE-VKDIRTV 189 + V+++ V Sbjct: 60 KQKFGDAVEEVVDV 73 >gi|327402917|ref|YP_004343755.1| nitrogen-fixing NifU domain-containing protein [Fluviicola taffensis DSM 16823] gi|327318425|gb|AEA42917.1| nitrogen-fixing NifU domain-containing protein [Fluviicola taffensis DSM 16823] Length = 81 Score = 82.9 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYG 171 + + + +I L N +RP + DGGD+ +GIV + + GACS C + T+K G Sbjct: 4 NKTELTDKINLSL-NELRPHLVADGGDMELVDITDEGIVQVRLLGACSDCSMSMMTIKAG 62 Query: 172 VANILNHFVPEVKDIRTV 189 + + PE+ + V Sbjct: 63 LEEAVKRVAPEIIAVEAV 80 >gi|295132384|ref|YP_003583060.1| NifU-like/thioredoxin-like protein [Zunongwangia profunda SM-A87] gi|294980399|gb|ADF50864.1| NifU-like/thioredoxin-like protein [Zunongwangia profunda SM-A87] Length = 80 Score = 82.9 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLKYG 171 + + +++ L +RP + DGGDI D +V + + GAC GC TLK G Sbjct: 2 TSEEIKLNVEKALAE-IRPFLESDGGDISLVAIEDDRLVKVQLEGACVGCSVNQMTLKSG 60 Query: 172 VANILNHFVPEVKDIRTV 189 V + +VP+++++ + Sbjct: 61 VEMTIKKYVPQIEEVINI 78 >gi|329945551|ref|ZP_08293288.1| NifU-like protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328528731|gb|EGF55683.1| NifU-like protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 170 Score = 82.9 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 74/184 (40%), Gaps = 18/184 (9%) Query: 7 DTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASV-YFGYDFITVGK 65 TP+P L++ V+ +G + F + A+ + + SV G +T+ Sbjct: 2 TTPDPDVLRW-----VVPDGLLPF-TGEVAQAPATLQALIDDGTLRSVRVDGGAVLTLLG 55 Query: 66 DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVL 125 + W V ++E G P GG + D A+ +++ Sbjct: 56 SGHSWRAEGARVRSALVEAL--GAPKAWKGG---------ETAQVSGPDDALEAAARQIA 104 Query: 126 DNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKD 185 + V GG +V + RDG+V ++M GAC CP+A T+ ++L P + + Sbjct: 105 GGSLGSFVNSHGGALVVRSVRDGVVEVAMEGACDECPAAEITMHARFEHLLRRRCPWLVE 164 Query: 186 IRTV 189 +R + Sbjct: 165 VRRI 168 >gi|283851976|ref|ZP_06369252.1| Fe-S cluster assembly protein NifU [Desulfovibrio sp. FW1012B] gi|283572700|gb|EFC20684.1| Fe-S cluster assembly protein NifU [Desulfovibrio sp. FW1012B] Length = 283 Score = 82.9 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ ++ + +V++ +RP + +DGGDI V +S+RGAC GCP ++ TL V Sbjct: 205 TNLERMKLVTKVMEEEIRPNLKKDGGDIELVDIDGHTVVVSLRGACKGCPKSNLTLTEFV 264 Query: 173 ANILNHFV-PEV 183 N L V PE+ Sbjct: 265 QNRLRELVEPEI 276 >gi|257059152|ref|YP_003137040.1| nitrogen-fixing NifU domain protein [Cyanothece sp. PCC 8802] gi|256589318|gb|ACV00205.1| nitrogen-fixing NifU domain protein [Cyanothece sp. PCC 8802] Length = 289 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSAS 165 + +RI++ L+ VRP + GD+ + V + + G CS CP+++ Sbjct: 85 HQLIKPPTPTLEERIQQALET-VRPGLKSHHGDVELVAIKFPDTVEVRLIGTCSNCPAST 143 Query: 166 ETLKYGVANILNHFVPEVKD 185 T+K GV + + PE+ Sbjct: 144 LTMKQGVEQAIKTYCPEITQ 163 >gi|148252075|ref|YP_001236660.1| putative nitrogen-fixing NifU, Rieske (2Fe-2S) region [Bradyrhizobium sp. BTAi1] gi|146404248|gb|ABQ32754.1| putative nitrogen-fixing NifU , Rieske (2Fe-2S) region [Bradyrhizobium sp. BTAi1] Length = 289 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 2/120 (1%) Query: 71 EHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA-VVQRIKEVLDNRV 129 E L+ ++ S + + + +R++ LD+ V Sbjct: 47 EDLQGEAFRRLVRALKSDSAALTAMKQAVSDEIVYAVLRRHDILKPSLSERLETALDS-V 105 Query: 130 RPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 RP +A GGD+ R + + GAC GCP+++ T GV + PE+ DI V Sbjct: 106 RPILASHGGDVELIAVRPPAIEVRFTGACDGCPASALTFHAGVKKAVEEACPEITDILQV 165 >gi|329769819|ref|ZP_08261220.1| hypothetical protein HMPREF0433_00984 [Gemella sanguinis M325] gi|328838181|gb|EGF87799.1| hypothetical protein HMPREF0433_00984 [Gemella sanguinis M325] Length = 84 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 + +IK L+ ++RP + DGGDI F ++DGI+ L +G C+ C + T+K+ + Sbjct: 7 ETISKIKIELE-KIRPKLIMDGGDIEFVNFKDGILKLRFKGECAHCELSHITMKFAIEKN 65 Query: 176 LNHFVPEVKDIRTV 189 + +PEVK + V Sbjct: 66 ILEKIPEVKKVTEV 79 >gi|218246101|ref|YP_002371472.1| nitrogen-fixing NifU domain-containing protein [Cyanothece sp. PCC 8801] gi|218166579|gb|ACK65316.1| nitrogen-fixing NifU domain protein [Cyanothece sp. PCC 8801] Length = 289 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSAS 165 + +RI++ L+ VRP + GD+ + V + + G CS CP+++ Sbjct: 85 HQLIKPPTPTLEERIQQALET-VRPGLKSHHGDVELVAIKFPDTVEVRLIGTCSNCPAST 143 Query: 166 ETLKYGVANILNHFVPEVKD 185 T+K GV + + PE+ Sbjct: 144 LTMKQGVEQAIKTYCPEITQ 163 >gi|313897537|ref|ZP_07831079.1| NifU-like protein [Clostridium sp. HGF2] gi|312957489|gb|EFR39115.1| NifU-like protein [Clostridium sp. HGF2] Length = 76 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + IK+ ++ ++RP + RDGGD+ F + DGIV + + GAC GC S +T++ G+ IL Sbjct: 5 IDEIKQTIE-KIRPYIQRDGGDVEFVSFEDGIVGVRLLGACVGCMSIDDTIQGGIEAILL 63 Query: 178 HFVPEVKDI 186 V V + Sbjct: 64 DEVEGVSGV 72 >gi|1171712|sp|Q00241|NIFU_PLEBO RecName: Full=Nitrogen fixation protein nifU gi|441182|dbj|BAA00567.1| NifU protein [Leptolyngbya boryana IAM M-101] gi|228686|prf||1808318C nifU gene Length = 205 Score = 82.5 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 2/101 (1%) Query: 91 IIHNGGLGDMKLDDMGSGDFIE--SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG 148 I ++ + ++ + I++VLD VRP + DGGD+ Sbjct: 105 IDEKETTAARIAAEISEAQIRKPLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGD 164 Query: 149 IVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 V ++++GAC C S++ TLK V L V ++ V Sbjct: 165 FVKVTLKGACGSCASSTATLKDAVEAKLRLRVLPTLVVQAV 205 >gi|98152888|ref|YP_611137.1| nitrogen-fixing NifU-like [Sphingopyxis alaskensis RB2256] gi|95105285|gb|ABF54908.1| nitrogen-fixing NifU-like [Sphingopyxis alaskensis RB2256] Length = 311 Score = 82.5 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 +++ +R+ L VRP +A GGD + GAC GCP+++ T GV Sbjct: 114 ASLFERVDAALAT-VRPTLAGHGGDAELVEVSGDKAVVRFLGACDGCPASALTFYAGVKK 172 Query: 175 ILNHFVPEVKDIRT 188 + VPE+++++ Sbjct: 173 AITEQVPEIREVKQ 186 >gi|86606476|ref|YP_475239.1| Fe-S cluster assembly protein NifU [Synechococcus sp. JA-3-3Ab] gi|86555018|gb|ABC99976.1| Fe-S cluster assembly protein NifU [Synechococcus sp. JA-3-3Ab] Length = 312 Score = 82.1 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 14/119 (11%) Query: 76 PVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV--------------VQRI 121 + +I D + + S V + RI Sbjct: 185 QIEDLIAAVLAETDATPSEDSRNSKGNSQNQTEPSPAAPSPVSATATPPPLTTLQKIARI 244 Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 + VL+ VRP + DGGD+ V++ ++G+C+ CPS TL+ + L V Sbjct: 245 QAVLEEEVRPLLLADGGDVELYDLEGDQVWVRLKGSCTTCPSQQNTLRLLIETRLQEQV 303 >gi|119486794|ref|ZP_01620769.1| Fe-S cluster assembly protein NifU [Lyngbya sp. PCC 8106] gi|119456087|gb|EAW37220.1| Fe-S cluster assembly protein NifU [Lyngbya sp. PCC 8106] Length = 300 Score = 82.1 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I++VL +++P +A+DGG++ V + ++GACS C S++ETLK + L V Sbjct: 232 IQQVLTEQIKPVLAKDGGNVELFDVEGDRVKVILQGACSSCASSTETLKIAIEGTLRATV 291 Query: 181 -PEVKDIRTV 189 P++ + V Sbjct: 292 SPDLI-VEAV 300 >gi|329767228|ref|ZP_08258755.1| hypothetical protein HMPREF0428_00452 [Gemella haemolysans M341] gi|328836895|gb|EGF86542.1| hypothetical protein HMPREF0428_00452 [Gemella haemolysans M341] Length = 84 Score = 82.1 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 V +IK L+ ++RP + +DGG+I F +++GI+ + G C+ C + TLKY + Sbjct: 7 ETVDKIKFELE-KIRPKLIKDGGNIEFINFKNGILKIRFLGECAHCELSHITLKYAIEKT 65 Query: 176 LNHFVPEVKDIRTV 189 + +PEV + V Sbjct: 66 IVEKIPEVNKVIEV 79 >gi|11498240|ref|NP_069466.1| nifU protein (nifU-3) [Archaeoglobus fulgidus DSM 4304] gi|2649997|gb|AAB90617.1| nifU protein (nifU-3) [Archaeoglobus fulgidus DSM 4304] Length = 77 Score = 81.8 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG--IVFLSMRGACSGCPSASETLKYGVAN 174 + ++++EV++ +RPA+ RDGG+I +G V + + GAC GCP + TL V Sbjct: 3 LREKVEEVVEKDIRPALMRDGGNIAVVDVDEGSGTVKVQLLGACGGCPMSMITLTSFVER 62 Query: 175 ILN 177 L Sbjct: 63 YLR 65 >gi|221194695|ref|ZP_03567752.1| conserved domain protein [Atopobium rimae ATCC 49626] gi|221185599|gb|EEE17989.1| conserved domain protein [Atopobium rimae ATCC 49626] Length = 78 Score = 81.8 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN 174 A+ + + + +R ++ DGGD+ DG V L M G+C+GCP ++ + G+ Sbjct: 2 AINRELLNATLDVIRQSLQADGGDVELIDVNDDGTVTLEMTGSCAGCPLSAYDMSEGIER 61 Query: 175 ILNHFVPEVKDIRT 188 IL VP VK ++ Sbjct: 62 ILVEHVPGVKRVQP 75 >gi|297568819|ref|YP_003690163.1| Fe-S cluster assembly protein NifU [Desulfurivibrio alkaliphilus AHT2] gi|296924734|gb|ADH85544.1| Fe-S cluster assembly protein NifU [Desulfurivibrio alkaliphilus AHT2] Length = 277 Score = 81.8 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 39/83 (46%) Query: 98 GDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGA 157 + K + ++ ++ I+E+ + +RPA+ +DGGDI V +++RGA Sbjct: 185 QESKAEPAAEPAKKLTNIQKIKMIEELFEREIRPALRKDGGDIELVDLDGDFVTVALRGA 244 Query: 158 CSGCPSASETLKYGVANILNHFV 180 C C + TLK V L V Sbjct: 245 CVTCKKSKLTLKEYVEKKLREQV 267 >gi|332668404|ref|YP_004451192.1| nitrogen-fixing NifU domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332337218|gb|AEE54319.1| nitrogen-fixing NifU domain-containing protein [Haliscomenobacter hydrossis DSM 1100] Length = 84 Score = 81.8 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLK 169 +E+ S ++ RI L N VRP +A DGG++ + +V + G C C + T++ Sbjct: 1 METKSELISRIDLAL-NEVRPHLAVDGGNVEVVDVTDEKVVKIKWLGNCQNCNMSIMTMR 59 Query: 170 YGVANILNHFVPEVKDIRTV 189 G+ + VPE+ + V Sbjct: 60 AGIEQAIRVKVPEITGVEAV 79 >gi|108805648|ref|YP_645585.1| nitrogen-fixing NifU-like protein [Rubrobacter xylanophilus DSM 9941] gi|108766891|gb|ABG05773.1| nitrogen-fixing NifU-like protein [Rubrobacter xylanophilus DSM 9941] Length = 80 Score = 81.8 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETL 168 +E+ + R++ L +VRPA+ DGGD + G V + M GACSGCP + Sbjct: 1 MEAKPDMRSRVEAAL-GKVRPAMQADGGDARVVDCDEETGSVKIQMLGACSGCPLSQLDF 59 Query: 169 KYGVANILNHFVPEVKDIRTV 189 Y + +++ VPEV++I V Sbjct: 60 VYAIESLIRREVPEVREILAV 80 >gi|254421266|ref|ZP_05034984.1| Fe-S cluster assembly protein NifU [Synechococcus sp. PCC 7335] gi|196188755|gb|EDX83719.1| Fe-S cluster assembly protein NifU [Synechococcus sp. PCC 7335] Length = 294 Score = 81.8 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 34/63 (53%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + I++V+ VRP + DGGDI +V + + GAC GC S+SETLK + L Sbjct: 223 INLIQQVIAEDVRPILLADGGDIELYDVDGDVVRVLLTGACGGCASSSETLKNSIETSLQ 282 Query: 178 HFV 180 V Sbjct: 283 AKV 285 >gi|257784797|ref|YP_003180014.1| nitrogen-fixing NifU domain-containing protein [Atopobium parvulum DSM 20469] gi|257473304|gb|ACV51423.1| nitrogen-fixing NifU domain protein [Atopobium parvulum DSM 20469] Length = 78 Score = 81.4 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 129 VRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 +R ++ DGGD+ DG V L M G+C+GCP ++ + G+ IL VP VK ++ Sbjct: 15 IRQSLQTDGGDVELIDVSDDGTVTLEMVGSCAGCPMSAYDMSEGIERILIEHVPGVKRVQ 74 Query: 188 T 188 Sbjct: 75 P 75 >gi|226363961|ref|YP_002781743.1| hypothetical protein ROP_45510 [Rhodococcus opacus B4] gi|226242450|dbj|BAH52798.1| hypothetical protein [Rhodococcus opacus B4] Length = 278 Score = 81.4 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 V R+ LD+ VRP + GGD+ G DG+V L + G+C CPS++ TL+ V + Sbjct: 58 DVETRVATALDS-VRPYLGSHGGDVELLGVVDGVVRLRLTGSCKSCPSSAVTLELAVKDA 116 Query: 176 LNHFVPEVKDIRTV 189 + PE DI V Sbjct: 117 VLAAAPETVDIEVV 130 >gi|302342126|ref|YP_003806655.1| Fe-S cluster assembly protein NifU [Desulfarculus baarsii DSM 2075] gi|301638739|gb|ADK84061.1| Fe-S cluster assembly protein NifU [Desulfarculus baarsii DSM 2075] Length = 285 Score = 81.4 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 42/97 (43%) Query: 93 HNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFL 152 ++ ++ ++ ++E L+ VRPA+ +DGGDI V + Sbjct: 187 SGALAAKVQAPPQAEPKKKLTNIQKMRLVEETLEREVRPALKQDGGDIELIDIDGDKVLV 246 Query: 153 SMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 S+RG CS C ++ TL V L FV + + V Sbjct: 247 SLRGMCSSCAASQATLSQFVQAKLREFVTDELVVEEV 283 >gi|260460215|ref|ZP_05808467.1| Rieske (2Fe-2S) domain protein [Mesorhizobium opportunistum WSM2075] gi|259033860|gb|EEW35119.1| Rieske (2Fe-2S) domain protein [Mesorhizobium opportunistum WSM2075] Length = 290 Score = 81.4 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + +R++ LD VRP +A GG++ R + + GAC GCP+++ T GV + Sbjct: 94 LSERVEAALDG-VRPMLASHGGNVELVNVRPPAIEVRFVGACDGCPASALTFHAGVKKAI 152 Query: 177 NHFVPEVKDIRTV 189 PE+ DI + Sbjct: 153 EEACPEITDIVQI 165 >gi|296171555|ref|ZP_06852819.1| Rieske family iron-sulfur cluster-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894117|gb|EFG73878.1| Rieske family iron-sulfur cluster-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 305 Score = 81.4 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN 174 + +R+ + LD RVRP + GGD+ DG+V L+ G+C CPS++ TL+ V + Sbjct: 101 DLHRRVSDALD-RVRPYLGSHGGDVDLLEITDDGVVRLAFAGSCKSCPSSAVTLELAVQD 159 Query: 175 ILNHFVPEVKDIRTV 189 + PEV I V Sbjct: 160 AVCAAAPEVSSIEAV 174 >gi|86607917|ref|YP_476679.1| Fe-S cluster assembly protein NifU [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556459|gb|ABD01416.1| Fe-S cluster assembly protein NifU [Synechococcus sp. JA-2-3B'a(2-13)] Length = 312 Score = 81.4 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + RI+ VL+ VRP + DGGD+ V++ ++G+C+ CPS TL+ + L Sbjct: 241 IARIQAVLEEEVRPLLLADGGDVELYDLEGDQVWVRLKGSCTTCPSQQNTLRLLIETRLQ 300 Query: 178 HFV 180 V Sbjct: 301 EQV 303 >gi|110004115|emb|CAK98454.1| hypothetical nitrogen fixation protein [Spiroplasma citri] Length = 75 Score = 81.4 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + K+++DN +RP + +DGGDI F ++ IV++ + GAC GC T+K GV I+ Sbjct: 4 TNQAKDIIDN-LRPYINQDGGDIEFVEVKNNIVYVRLAGACVGCGLIDSTIKDGVEQIVK 62 Query: 178 HFVPEVKDIRTV 189 +P++ + + Sbjct: 63 QEMPDIIAVEVI 74 >gi|308160832|gb|EFO63302.1| Hypothetical protein GLP15_1091 [Giardia lamblia P15] Length = 197 Score = 81.0 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 70/158 (44%), Gaps = 10/158 (6%) Query: 36 AEISPLASRIFSIPGIASVYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHN 94 E L S + + G+ + +TV + Q W +R + + F P N Sbjct: 40 PEAPSLQSDLMKVKGVKKLSISPTGVTVTVRSQGIWPSVRSAIEDKVYAAFDPNTPHTPN 99 Query: 95 GGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNR-VRPAVARDGGDIVFKG---YRDG-I 149 ++ + + +G + ++ +++ E+L + P +ARDGG ++ G + Sbjct: 100 ELRLAIQ-EILNTGSRVPNN---IRKASELLIKAAINPFLARDGGSCSYERHELTDKGLV 155 Query: 150 VFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 V++ + G CSGC ++ T+ V + ++P++ ++ Sbjct: 156 VYIKLHGNCSGCSKSTTTMNTFVISEFKRYIPDIHTVK 193 >gi|94270459|ref|ZP_01291748.1| Fe-S cluster assembly protein NifU [delta proteobacterium MLMS-1] gi|93450788|gb|EAT01836.1| Fe-S cluster assembly protein NifU [delta proteobacterium MLMS-1] Length = 277 Score = 81.0 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++ I++VL+ ++PA+ +DGGDI V +S+RGAC+ C + T+K V L Sbjct: 205 IKMIEDVLEREIKPALRKDGGDIELVDLDGDFVTVSLRGACASCKKSQTTIKDYVEKKLR 264 Query: 178 HFV 180 V Sbjct: 265 EQV 267 >gi|94267278|ref|ZP_01290831.1| Fe-S cluster assembly protein NifU [delta proteobacterium MLMS-1] gi|93452070|gb|EAT02758.1| Fe-S cluster assembly protein NifU [delta proteobacterium MLMS-1] Length = 277 Score = 81.0 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++ I++VL+ ++PA+ +DGGDI V +S+RGAC+ C + T+K V L Sbjct: 205 IKMIEDVLEREIKPALRKDGGDIELVDLDGDFVTVSLRGACASCKKSQTTIKDYVEKKLR 264 Query: 178 HFV 180 V Sbjct: 265 EQV 267 >gi|303327402|ref|ZP_07357843.1| Fe-S cluster assembly protein NifU [Desulfovibrio sp. 3_1_syn3] gi|302862342|gb|EFL85275.1| Fe-S cluster assembly protein NifU [Desulfovibrio sp. 3_1_syn3] Length = 278 Score = 81.0 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ +Q++ + +D +RP +A DGGDI V +S+RG CS C S+ T++ V Sbjct: 202 TNVQRMQQVLKTIDEEIRPQLAADGGDIELVDVDGKRVTVSLRGRCSHCRSSEVTIRNLV 261 Query: 173 ANILNHFV-PEV 183 +L V P++ Sbjct: 262 ERLLREHVEPDI 273 >gi|296272309|ref|YP_003654940.1| nitrogen-fixing NifU domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296096483|gb|ADG92433.1| nitrogen-fixing NifU domain protein [Arcobacter nitrofigilis DSM 7299] Length = 92 Score = 81.0 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 3/82 (3%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD + +K ++DN++ P +A+DGG + ++G VF+ + GAC GC ++ TL Sbjct: 1 MMPFSDEDLFPVVKNIIDNKIAPMLAQDGGAMTLLDVKNGKVFVQLNGACVGCSASGSTL 60 Query: 169 KYGVANILNHFV-PE--VKDIR 187 KY V L + PE + ++ Sbjct: 61 KYVVEKELKAAIHPELIIINVE 82 >gi|255030011|ref|ZP_05301962.1| hypothetical protein LmonL_14764 [Listeria monocytogenes LO28] Length = 61 Score = 81.0 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 131 PAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 P + RDGGD +DGIV + + GAC CPS+ TLK G+ L + K++ V Sbjct: 1 PFLVRDGGDYELIEVTQDGIVKIKLLGACETCPSSDMTLKMGIELTLAEKIIGFKEVVQV 60 >gi|239624672|ref|ZP_04667703.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|239521058|gb|EEQ60924.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 96 Score = 81.0 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGV 172 + + + I+ VL+ VRP ++ GG + +GI+++ M+G C+GCPSA ET+K V Sbjct: 2 NEELRKDIEAVLNLFVRPQLSSHGGGLEVVDLDENGILWIEMQGGCAGCPSADETVKNLV 61 Query: 173 ANILNHFVPEVKDIR 187 L +P++K + Sbjct: 62 QKELVTRIPQIKGVE 76 >gi|111021577|ref|YP_704549.1| nitrogen fixation protein [Rhodococcus jostii RHA1] gi|110821107|gb|ABG96391.1| possible nitrogen fixation protein [Rhodococcus jostii RHA1] Length = 318 Score = 81.0 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 V R+ LD+ VRP + GGD+ G +G+V L + G+C CPS++ TL+ V + Sbjct: 98 DVETRVATALDS-VRPYLGSHGGDVELLGVVEGVVRLRLTGSCQSCPSSAVTLELAVKDA 156 Query: 176 LNHFVPEVKDIRTV 189 + PE DI V Sbjct: 157 VLAAAPETVDIEVV 170 >gi|33520016|ref|NP_878848.1| hypothetical protein Bfl573 [Candidatus Blochmannia floridanus] gi|51701996|sp|Q7VRN1|NFUA_BLOFL RecName: Full=Fe/S biogenesis protein nfuA gi|33504362|emb|CAD83255.1| Thioredoxin-like proteins and domains [Candidatus Blochmannia floridanus] Length = 205 Score = 80.6 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANI 175 + +IK +L +++ P +A GG + D I L G C+GC A T+K G+ Sbjct: 120 LENQIKHILTHQINPQLAMHGGSVSLVKITSDSIAILKFHGGCNGCAMAFYTIKEGIEKT 179 Query: 176 LNHFVPEVKDIRT 188 L PE+ + Sbjct: 180 LKKLCPELNGVID 192 >gi|289549172|ref|YP_003474160.1| nitrogen-fixing NifU domain protein [Thermocrinis albus DSM 14484] gi|289182789|gb|ADC90033.1| nitrogen-fixing NifU domain protein [Thermocrinis albus DSM 14484] Length = 268 Score = 80.6 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 128 RVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 V+P + GGD+ +D V +S++GAC GC + TL+ + + +VP +K I Sbjct: 98 MVKPYIQSHGGDVELVDVKDDTVIVSLKGACVGCAQSVFTLRQTILEAIQAYVPTIKRIV 157 Query: 188 TV 189 V Sbjct: 158 EV 159 >gi|288931963|ref|YP_003436023.1| nitrogen-fixing NifU domain protein [Ferroglobus placidus DSM 10642] gi|288894211|gb|ADC65748.1| nitrogen-fixing NifU domain protein [Ferroglobus placidus DSM 10642] Length = 77 Score = 80.6 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Query: 130 RPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 RPA+ RDGG+I + G V + + G+C GCP + TL V L VPEVK + Sbjct: 16 RPALIRDGGNIAVVDVDEESGEVKVKLLGSCYGCPMSQITLTMFVEQHLKSRVPEVKKVT 75 Query: 188 TV 189 V Sbjct: 76 PV 77 >gi|111226134|ref|YP_716928.1| hypothetical protein FRAAL6802 [Frankia alni ACN14a] gi|111153666|emb|CAJ65425.1| Hypothetical protein in nifB-nifU intergenic region (ORF2) [Frankia alni ACN14a] Length = 192 Score = 80.6 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 8/112 (7%) Query: 85 FISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG 144 F +P + + +D+ + ++++E+++ +RP + DGGD Sbjct: 81 FTFANPNAKSSCGCGSSFGSSDDPERTAADAKLREQVEEIMEE-IRPMLRGDGGDAEVVA 139 Query: 145 YRDG-------IVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 G V L + GAC GC SA+ TL + L +PE+ + V Sbjct: 140 VLAGGGQPGSAEVHLRLTGACGGCSSANATLTGVIEARLRQELPEIGRVALV 191 >gi|308273500|emb|CBX30102.1| Nitrogen fixation protein nifU [uncultured Desulfobacterium sp.] Length = 275 Score = 80.6 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ ++ I+E ++ ++PA+ +DGG+I V + +RG C+ C + TLK+ V Sbjct: 198 TNIQKIKLIEETMEREIKPALKKDGGNIELIDVDGNTVIVELRGTCASCSKSQITLKHYV 257 Query: 173 ANILNHFV-PEVKDIRTV 189 + L V P++ + V Sbjct: 258 ESKLRELVSPDLI-VEEV 274 >gi|301058680|ref|ZP_07199681.1| Fe-S cluster assembly protein NifU [delta proteobacterium NaphS2] gi|300447244|gb|EFK11008.1| Fe-S cluster assembly protein NifU [delta proteobacterium NaphS2] Length = 274 Score = 80.2 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 48/96 (50%), Gaps = 2/96 (2%) Query: 95 GGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSM 154 + ++ ++ S+ +++I+E + N + P++ +DGG++ V + M Sbjct: 178 EIIQKVRGEEKAPAPPKMSNMQKIKKIEETIANEISPSLKQDGGNVELVDVVGNRVLVKM 237 Query: 155 RGACSGCPSASETLKYGVANILNHFV-PEVKDIRTV 189 +G+C+ C ++ +TLK V L V P++ + V Sbjct: 238 QGSCAVCKASQQTLKNFVEAKLREMVWPDLV-VEEV 272 >gi|167041225|gb|ABZ05982.1| putative NifU-like domain protein [uncultured marine microorganism HF4000_001N02] Length = 79 Score = 80.2 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 31/65 (47%) Query: 124 VLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEV 183 ++ + V P VA GG + G DG ++ G C GC TLK GV ++ VP + Sbjct: 3 IIASEVNPVVASHGGHVDLIGVDDGKAIIAFGGGCQGCGMVDVTLKQGVEVMIKDSVPGI 62 Query: 184 KDIRT 188 ++ Sbjct: 63 SEVVD 67 >gi|120403360|ref|YP_953189.1| Rieske (2Fe-2S) domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119956178|gb|ABM13183.1| Rieske (2Fe-2S) domain protein [Mycobacterium vanbaalenii PYR-1] Length = 285 Score = 80.2 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 128 RVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 VRP + GGD+ D + F+ + GAC+GC AS TL+ V L VP ++ + Sbjct: 101 AVRPQLHSHGGDVTLVRVDDRVAFVRLEGACNGCSMASVTLRELVEAALLQGVPNLEAVE 160 Query: 188 TV 189 V Sbjct: 161 VV 162 >gi|126663010|ref|ZP_01734008.1| hypothetical protein FBBAL38_06650 [Flavobacteria bacterium BAL38] gi|126624668|gb|EAZ95358.1| hypothetical protein FBBAL38_06650 [Flavobacteria bacterium BAL38] Length = 79 Score = 80.2 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVAN 174 + + +++ L N +RP + DGGDI D V + + GAC+ C + T+K GV Sbjct: 5 EIKENVEKAL-NEIRPFLNSDGGDITLVEIIDDKHVKVRLEGACTNCSLSISTMKAGVET 63 Query: 175 ILNHFVPEVKDIRTV 189 + FVP+++ + + Sbjct: 64 TIKKFVPQIETVENI 78 >gi|111608856|gb|ABH10986.1| Fe-S cluster assembly protein NifU [Polytomella parva] Length = 168 Score = 80.2 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 D ++ + + LD +RP + DGGD+ ++G VFL +G+CS C S +T+K G+ Sbjct: 30 DVLSIENVNKSLD-YIRPVLMNDGGDVEIVKIQNGKVFLRFQGSCSTCTSQEDTMKGGIE 88 Query: 174 NILNHFVPE-VKDIRTV 189 L E +K+I V Sbjct: 89 TTLRSSFGELLKEIIQV 105 >gi|51246082|ref|YP_065966.1| nitrogen fixation protein (NifU) [Desulfotalea psychrophila LSv54] gi|50877119|emb|CAG36959.1| probable nitrogen fixation protein (NifU) [Desulfotalea psychrophila LSv54] Length = 277 Score = 80.2 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 37/71 (52%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +++I+EVLD +RP + +D GDI V +S+RGAC C ++ T+K V L Sbjct: 206 IKKIEEVLDKVIRPVLKKDDGDIELVDVDGDFVTVSLRGACKSCSNSQTTIKEYVEKKLR 265 Query: 178 HFVPEVKDIRT 188 V E + Sbjct: 266 ELVLESLIVEE 276 >gi|255038680|ref|YP_003089301.1| nitrogen-fixing NifU domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254951436|gb|ACT96136.1| nitrogen-fixing NifU domain protein [Dyadobacter fermentans DSM 18053] Length = 85 Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG-YRDGIVFLSMRGACSGCPSASETLK 169 ++S ++ I++ L+ VRP + DGGD+ F D IV L ++G+C CP ++ T + Sbjct: 1 MDSKEKTIELIEQALET-VRPYLHADGGDVKFVELTDDLIVKLELQGSCQSCPMSAMTFR 59 Query: 170 YGVANILNHFVPEVKDIRT 188 G+ + VP + + + Sbjct: 60 AGLEESIRKAVPYINKVVS 78 >gi|289523173|ref|ZP_06440027.1| NifU domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503716|gb|EFD24880.1| NifU domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 89 Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 3/78 (3%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGV 172 + V + I +V++ +RPA+ GGDI F GY + V + + GAC GCP A ETL++ V Sbjct: 11 TQVQKDITDVIEKDIRPALVSHGGDIEFVGYDEAEKKVMVRLTGACGGCPFARETLRFQV 70 Query: 173 ANILNHFVPE-VKDIRTV 189 N+L +P+ V + +V Sbjct: 71 ENVLKDRLPDIVASVESV 88 >gi|294660416|ref|NP_853167.2| hypothetical protein MGA_0005 [Mycoplasma gallisepticum str. R(low)] gi|284812075|gb|AAP56735.2| conserved hypothetical protein [Mycoplasma gallisepticum str. R(low)] gi|284930649|gb|ADC30588.1| conserved hypothetical protein [Mycoplasma gallisepticum str. R(high)] Length = 99 Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 25/57 (43%), Positives = 33/57 (57%) Query: 133 VARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 + RDGGD+ F+GY GIV + + G C GC T K GV IL +PEVK + + Sbjct: 23 IKRDGGDLSFEGYEKGIVTIKLLGNCDGCSLVDMTYKDGVETILKAEIPEVKSVVLI 79 >gi|299822027|ref|ZP_07053914.1| NifU domain protein [Listeria grayi DSM 20601] gi|299816655|gb|EFI83892.1| NifU domain protein [Listeria grayi DSM 20601] Length = 79 Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + ++ L + RP +ARDGGD +DG V + + GAC C S+ TLK G+ L Sbjct: 8 EAVERALQ-KFRPYLARDGGDYELIDVTKDGTVKIKLLGACESCASSEITLKVGLETTLA 66 Query: 178 HFVPEVKDIRTV 189 + K++ V Sbjct: 67 DKLIGFKEVVQV 78 >gi|240171478|ref|ZP_04750137.1| hypothetical protein MkanA1_19346 [Mycobacterium kansasii ATCC 12478] Length = 301 Score = 79.8 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 V +R+ + L+ RVRP + GGD+ D +V L+ G+C CPS++ TL+ V + Sbjct: 93 DVHRRVSDALE-RVRPYLGSHGGDVDLLEVTDTVVRLAFTGSCKSCPSSAVTLELAVQDA 151 Query: 176 LNHFVPEVKDIRTV 189 + PE+ I V Sbjct: 152 IRAAAPEICAIELV 165 >gi|146299086|ref|YP_001193677.1| NifU domain-containing protein [Flavobacterium johnsoniae UW101] gi|146153504|gb|ABQ04358.1| nitrogen-fixing NifU domain protein [Flavobacterium johnsoniae UW101] Length = 79 Score = 79.8 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASETLKYG 171 + + + LD +RP + DGGDI D V + + GAC C TLK G Sbjct: 2 TTEELTNNVLLALDE-IRPFLKSDGGDITLISIDDDKHVKVRLEGACISCSVNQMTLKAG 60 Query: 172 VANILNHFVPEVKDIRTV 189 V + + P+++ + + Sbjct: 61 VETTIKKYAPQIETVVNI 78 >gi|255994079|ref|ZP_05427214.1| NifU-related protein [Eubacterium saphenum ATCC 49989] gi|255993747|gb|EEU03836.1| NifU-related protein [Eubacterium saphenum ATCC 49989] Length = 100 Score = 79.8 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 39/77 (50%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 E+ +++ + L +V P +A G + +G+ + + GAC+ CPSA T++ Sbjct: 1 MNENTEMTDKKLVQTLKEKVDPLLAEHLGGSELVDFENGVARVRLTGACATCPSAELTME 60 Query: 170 YGVANILNHFVPEVKDI 186 V I+ PEVKD+ Sbjct: 61 SVVKEIVLENCPEVKDV 77 >gi|220934655|ref|YP_002513554.1| nitrogen-fixing NifU domain protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995965|gb|ACL72567.1| nitrogen-fixing NifU domain protein [Thioalkalivibrio sp. HL-EbGR7] Length = 281 Score = 79.8 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 ++E ++ R + +DGGDI F D V + ++GAC GCP ++ L+ V ++ Sbjct: 213 VREAVEE-ARKILMQDGGDIEFVAIEDRTVRVRLKGACVGCPRSTLDLRNVVERLVRSRA 271 Query: 181 PEVKDIRT 188 P V + Sbjct: 272 PGVARVVN 279 >gi|290791697|gb|EFD95356.1| hypothetical protein GL50803_32838 [Giardia lamblia ATCC 50803] Length = 197 Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 67/158 (42%), Gaps = 10/158 (6%) Query: 36 AEISPLASRIFSIPGIASVYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHN 94 E L + + + G+ + +T+ + Q W +R + + F P H Sbjct: 40 PEAPSLQNDLMKVKGVKKLSISPTGVTLTVRSQGIWPSVRSAIEDKLYAAFDPSTP--HT 97 Query: 95 GGLGDMKLDDMGSGDFIESDSAVVQRIKEVL-DNRVRPAVARDGGDIVF---KGYRDG-I 149 + + +M S ++ ++R E+L + P +ARDGG + + G + Sbjct: 98 PDELRLAIQEMLSTGPRAPNN--IRRASELLIRAAINPFLARDGGSCSYRRHEVTDKGLV 155 Query: 150 VFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 V++ + G CSGC ++ T+ V ++P++ +R Sbjct: 156 VYIELHGNCSGCSKSTTTMNTFVIGEFKKYIPDIHTVR 193 >gi|120434494|ref|YP_956868.1| NifU-like/thioredoxin-like protein [Gramella forsetii KT0803] gi|117576644|emb|CAL65113.1| protein containing NifU-like domain / thioredoxin-like protein [Gramella forsetii KT0803] Length = 80 Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLKYG 171 + V +++ L +RP + DGG+I D +V + + GAC GC TLK G Sbjct: 2 TSEEVKMNVEKALAE-IRPFLESDGGNISLVSIEDDRLVKVQLEGACVGCTVNQMTLKSG 60 Query: 172 VANILNHFVPEVKDIRTV 189 V + +VP+++ + + Sbjct: 61 VEMTIKKYVPQIEKVVNI 78 >gi|323697813|ref|ZP_08109725.1| Fe-S cluster assembly protein NifU [Desulfovibrio sp. ND132] gi|323457745|gb|EGB13610.1| Fe-S cluster assembly protein NifU [Desulfovibrio desulfuricans ND132] Length = 284 Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I+ V+D VRP + DGG+I V + G CSGCPS+ TL+ V L V Sbjct: 216 IERVIDEDVRPKLKADGGNIELVDIDRDAVVVRFLGMCSGCPSSRATLEGLVETALREKV 275 Query: 181 -PEVKDIRT 188 P +K +R Sbjct: 276 DPGLK-VRE 283 >gi|237751304|ref|ZP_04581784.1| NifU family protein [Helicobacter bilis ATCC 43879] gi|229372670|gb|EEO23061.1| NifU family protein [Helicobacter bilis ATCC 43879] Length = 95 Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 3/83 (3%) Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASET 167 F SD+ ++ +++ + N VRP + +DGGDI ++ VF+ GACSGCPS + T Sbjct: 15 DMFPFSDTELLAPVRQSI-NSVRPILLKDGGDIEIVEIKNACVFVRFHGACSGCPSKNAT 73 Query: 168 LKYGVANILNHFV-PEVKDIRTV 189 L + L + P++K + V Sbjct: 74 LHNAILATLQRDIHPDIK-VSEV 95 >gi|158318602|ref|YP_001511110.1| iron-sulfur cluster assembly accessory protein [Frankia sp. EAN1pec] gi|158114007|gb|ABW16204.1| iron-sulfur cluster assembly accessory protein [Frankia sp. EAN1pec] Length = 206 Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 8/120 (6%) Query: 77 VLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARD 136 V + F +P + + E+D + ++++V+ +RP + D Sbjct: 87 VESLTSSGFTFTNPNATSSCGCGNSFGTPEEPERAEADDRLRGQVEDVIAE-IRPFLQGD 145 Query: 137 GGDIVFKGY-----RDGI--VFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 GGD+ G V + + GAC+GC SAS T+ + + +PE+ + V Sbjct: 146 GGDVQLVTVLAGNGEPGTAEVHIRLVGACNGCSSASATVTAVIEKRIKESLPEIGRVALV 205 >gi|298206741|ref|YP_003714920.1| NifU protein, putative [Croceibacter atlanticus HTCC2559] gi|83849372|gb|EAP87240.1| NifU protein, putative [Croceibacter atlanticus HTCC2559] Length = 80 Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLKYGVA 173 + ++ L+ +RP + DGGDI D VF+ + G C GC TLK GV Sbjct: 4 QELYNSVQAALEE-IRPFLQNDGGDISLVSIEDDKTVFVKLMGNCVGCSVNQMTLKSGVE 62 Query: 174 NILNHFVPEVKDI 186 + P+++ + Sbjct: 63 MTIKKHAPQIEKV 75 >gi|302825922|ref|XP_002994529.1| hypothetical protein SELMODRAFT_48861 [Selaginella moellendorffii] gi|300137483|gb|EFJ04406.1| hypothetical protein SELMODRAFT_48861 [Selaginella moellendorffii] Length = 126 Score = 79.1 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 25/48 (52%) Query: 142 FKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 + +V L ++GAC CPS+ T+K G+ L +PE+ + V Sbjct: 1 MEEIDGLVVKLKLQGACGSCPSSLMTMKMGIEARLKEKIPEIIGVEQV 48 Score = 39.0 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 39/99 (39%), Gaps = 7/99 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDS--AVVQRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIV 150 L + + +G ++++ + + + + + +RP + GG + +V Sbjct: 32 EARLKEKIPEIIGVEQVQDTETGLELTEENVDKILSEIRPYLVGTGGGELTLVKIDGPVV 91 Query: 151 FLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 + + G +G T++ V L +P + ++ V Sbjct: 92 KIRIEGPAAG----VMTVRVAVTQKLREKIPMIAAVQLV 126 >gi|284043999|ref|YP_003394339.1| nitrogen-fixing NifU domain protein [Conexibacter woesei DSM 14684] gi|283948220|gb|ADB50964.1| nitrogen-fixing NifU domain protein [Conexibacter woesei DSM 14684] Length = 306 Score = 79.1 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + +R++ LD VRP +A GGD+ ++G+ L + G+C GC +++ TL+ V L Sbjct: 106 LEERVRAALDE-VRPYLASHGGDVELLAVQEGVARLRLVGSCRGCAASASTLEAVVEQAL 164 Query: 177 NHFVPEV 183 P++ Sbjct: 165 EQAAPDL 171 >gi|170721075|ref|YP_001748763.1| IscR-regulated protein YhgI [Pseudomonas putida W619] gi|254767314|sp|B1J6F5|NFUA_PSEPW RecName: Full=Fe/S biogenesis protein nfuA gi|169759078|gb|ACA72394.1| IscR-regulated protein YhgI [Pseudomonas putida W619] Length = 194 Score = 79.1 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETL 168 + DS + +RI L + P +A GG + DGI L G C GC A TL Sbjct: 103 MVNEDSPINERINYYLQTEINPGLASHGGQVSLVDVVDDGIAVLQFGGGCQGCGQADVTL 162 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ L +PE+K +R V Sbjct: 163 KDGIERTLLERIPELKGVRDV 183 >gi|17228187|ref|NP_484735.1| hypothetical protein alr0692 [Nostoc sp. PCC 7120] gi|17130037|dbj|BAB72649.1| alr0692 [Nostoc sp. PCC 7120] Length = 158 Score = 79.1 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVAN 174 ++QR++ L+ VRP + GD+ + V + G CS CP+++ TL GV Sbjct: 84 PLLQRVQAALEE-VRPGLKDHHGDVELVAIKPPDTVEVRFIGTCSSCPASTLTLSQGVEQ 142 Query: 175 ILNHFVPEVKDIRTV 189 + PE+ + V Sbjct: 143 AIKALCPEIVTVIAV 157 >gi|307823832|ref|ZP_07654060.1| Fe-S cluster assembly protein NifU [Methylobacter tundripaludum SV96] gi|307735126|gb|EFO05975.1| Fe-S cluster assembly protein NifU [Methylobacter tundripaludum SV96] Length = 301 Score = 79.1 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 49/111 (44%), Gaps = 2/111 (1%) Query: 76 PVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVAR 135 + ++ + + + + ++ +++I+EVL++ +RPA+ Sbjct: 178 DIEAILEKVLAEKGEKFDPTAAPVAAPEKVAAVKAPMTNLQRIKKIEEVLES-LRPALMA 236 Query: 136 DGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 DGGD+ +++M GAC+GC A+ T+ G+ L + E + Sbjct: 237 DGGDVELVEVIGNTAYVNMTGACNGCQMAAMTI-AGIQQRLMEVMGEFIKV 286 >gi|325066683|ref|ZP_08125356.1| NifU-like protein [Actinomyces oris K20] Length = 178 Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 13/169 (7%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSIPGIASV-YFGYDFITVGKDQYDWEHLRPPVLGM 80 V+ +G + F + A L ++ + SV G +T+ +DW V Sbjct: 20 VIPDGLLPF-TGEVAHAPALLQKLLDDGTLRSVRVDGGGVLTLLGTGHDWRTEGARVRSA 78 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI 140 +++ G + D D A+ +++ D + V GG + Sbjct: 79 LVDAL---------GAPKSWRGADTAHA--SGPDDALEAAARQIADGSLGTFVNSHGGAL 127 Query: 141 VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 V RDG+V ++M GAC CP+A T+ ++L P + ++R + Sbjct: 128 VVHSVRDGVVEIAMEGACDHCPAAEITMHARFEHLLRRRCPWLVEVRRI 176 >gi|291276862|ref|YP_003516634.1| NifU-like protein [Helicobacter mustelae 12198] gi|290964056|emb|CBG39896.1| nifU protein homolog [Helicobacter mustelae 12198] Length = 92 Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 F D + + ++ ++ RP + DGGDI G R V++ ++GAC GC + TL Sbjct: 1 MFPFGDEELQKPVEMSIEKT-RPHLLADGGDIAILGIRGPCVYVRLKGACVGCAHSHITL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 K + L + P++K + Sbjct: 60 KNAIERQLKIDIHPDMKVV 78 >gi|26989102|ref|NP_744527.1| yhgI protein [Pseudomonas putida KT2440] gi|148548525|ref|YP_001268627.1| HesB/YadR/YfhF-family protein [Pseudomonas putida F1] gi|325276843|ref|ZP_08142540.1| HesB/YadR/YfhF-family protein [Pseudomonas sp. TJI-51] gi|51702172|sp|Q88KB2|NFUA_PSEPK RecName: Full=Fe/S biogenesis protein nfuA gi|254767312|sp|A5W5N3|NFUA_PSEP1 RecName: Full=Fe/S biogenesis protein nfuA gi|24983933|gb|AAN67991.1|AE016431_7 yhgI protein [Pseudomonas putida KT2440] gi|148512583|gb|ABQ79443.1| HesB/YadR/YfhF-family protein [Pseudomonas putida F1] gi|313499540|gb|ADR60906.1| YhgI [Pseudomonas putida BIRD-1] gi|324098009|gb|EGB96158.1| HesB/YadR/YfhF-family protein [Pseudomonas sp. TJI-51] Length = 194 Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETL 168 + DS + +RI L + P +A GG + DGI L G C GC A TL Sbjct: 103 MVNEDSPINERINYYLQTEINPGLASHGGQVSLVDVVDDGIAVLQFGGGCQGCGQADVTL 162 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ L +PE+K +R V Sbjct: 163 KEGIERTLLERIPELKGVRDV 183 >gi|167032993|ref|YP_001668224.1| IscR-regulated protein YhgI [Pseudomonas putida GB-1] gi|254767313|sp|B0KKI2|NFUA_PSEPG RecName: Full=Fe/S biogenesis protein nfuA gi|166859481|gb|ABY97888.1| IscR-regulated protein YhgI [Pseudomonas putida GB-1] Length = 194 Score = 78.7 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETL 168 + DS + +RI L + P +A GG + DGI L G C GC A TL Sbjct: 103 MVNEDSPINERINYYLQTEINPGLASHGGQVSLVDVVDDGIAVLQFGGGCQGCGQADVTL 162 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ L +PE+K +R V Sbjct: 163 KEGIERTLLERIPELKGVRDV 183 >gi|317485383|ref|ZP_07944262.1| NifU-like N terminal domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923342|gb|EFV44549.1| NifU-like N terminal domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 282 Score = 78.7 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 44/95 (46%) Query: 83 EHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVF 142 E + I+ + + I ++ +Q++ +VL + VRP +A DGGDI Sbjct: 174 ECLDTIQDILDEELGKPKLKEFNPAPKSIMTNVQRMQKVMQVLQDEVRPRLAADGGDIEL 233 Query: 143 KGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V +++RG CS C S + TLK V IL Sbjct: 234 VDVDGHRVVVALRGLCSNCSSRTVTLKDLVEKILR 268 >gi|4325122|gb|AAD17270.1| NifV [Frankia sp. EuIK1] Length = 206 Score = 78.3 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 8/120 (6%) Query: 77 VLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARD 136 V + F +P + + E+D + ++++V+ +RP + D Sbjct: 87 VESLTSSGFTFTNPNATSSCGCGNSFGTPEEPERAEADERLRGQVEDVIAE-IRPFLQGD 145 Query: 137 GGDIVFKGYRDG-------IVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 GGD+ G V + + GAC+GC SAS T+ + + +PE+ + V Sbjct: 146 GGDVQLVTVLAGNGQPGTAEVHIRLVGACNGCSSASATVTAVIEKRIKESLPEIGRVALV 205 >gi|104782423|ref|YP_608921.1| hypothetical protein PSEEN3379 [Pseudomonas entomophila L48] gi|122402793|sp|Q1I898|NFUA_PSEE4 RecName: Full=Fe/S biogenesis protein nfuA gi|95111410|emb|CAK16130.1| conserved hypothetical protein [Pseudomonas entomophila L48] Length = 194 Score = 78.3 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETL 168 + DS + +RI L + P +A GG + DGI L G C GC A TL Sbjct: 103 MVNEDSPINERINYYLQTEINPGLASHGGAVSLVDVVDDGIAVLQFGGGCQGCGQADVTL 162 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ L +PE+K +R V Sbjct: 163 KEGIERTLLERIPELKGVRDV 183 >gi|311086265|gb|ADP66347.1| iron-sulfur cluster scaffold protein (YhgI) [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 192 Score = 78.3 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 61/179 (34%), Gaps = 32/179 (17%) Query: 29 HFSNAKEAEISPLASRIFSI-PGIASVYFGYDFIT-------------------VGKDQY 68 HF++ E R+F + PG + G F V KD Sbjct: 11 HFTSLLSNEPENTQIRVFVVNPGTPNAECGVAFCPENEIELSDIQLKYDGFFVYVNKDTI 70 Query: 69 DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNR 128 +L+ V+ ++ + S + + S + +++K L+ Sbjct: 71 --SYLKNSVIDLVTDKIGSQLTLKAPYAKNNFSKKVSSS---------LEEKVKCFLNLE 119 Query: 129 VRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 + P ++ GG + +GI + G C+GC TLK V L E+K + Sbjct: 120 INPQLSMHGGRVELIKIDKNGIAAIQFSGGCNGCSMIGSTLKETVEKKLLSSFSEIKKV 178 >gi|320534511|ref|ZP_08034970.1| NifU-like domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133275|gb|EFW25764.1| NifU-like domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 178 Score = 77.9 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 13/169 (7%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSIPGIASV-YFGYDFITVGKDQYDWEHLRPPVLGM 80 V+ +G + F + A L ++ + SV G +T+ +DW V Sbjct: 20 VVPDGLLPF-TGEVAHAPALLQKLMDDGTLRSVRVDGGGVLTLLGAGHDWRTEGARVRSA 78 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI 140 +++ G P G D A+ +++ D + + GG + Sbjct: 79 LVDAL--GAPTSWKGASTSHASGP---------DDALEAAARQIADGSLGTFINSHGGAL 127 Query: 141 VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 V + RDG+V ++M G+C CP+A T+ ++L P + ++R V Sbjct: 128 VVQSVRDGVVEIAMEGSCDHCPAAEITMHARFEHLLRRRCPWMVEVRRV 176 >gi|326772596|ref|ZP_08231880.1| conserved hypothetical protein [Actinomyces viscosus C505] gi|326637228|gb|EGE38130.1| conserved hypothetical protein [Actinomyces viscosus C505] Length = 178 Score = 77.9 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 13/169 (7%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSIPGIASV-YFGYDFITVGKDQYDWEHLRPPVLGM 80 V+ +G + F + A L ++ + SV G +T+ +DW V Sbjct: 20 VIPDGLLAF-TGEVAHAPALLQQLLDDGTLRSVRVDGGGVLTLLGTGHDWRTEGARVRSA 78 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI 140 +++ G P + D A+ +++ D + V GG + Sbjct: 79 LVDAL--GAP---------KSWKGAATAHASGPDDALEAAARQIADGSLGTFVNSHGGAL 127 Query: 141 VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 V RDG+V ++M GAC CP+A T+ ++L P + ++R + Sbjct: 128 VVHSVRDGVVEIAMEGACDHCPAAEITMHARFEHLLRRRCPWLVEVRRI 176 >gi|114321604|ref|YP_743287.1| HesB/YadR/YfhF-family protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227998|gb|ABI57797.1| HesB/YadR/YfhF-family protein [Alkalilimnicola ehrlichii MLHE-1] Length = 211 Score = 77.9 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 66/183 (36%), Gaps = 11/183 (6%) Query: 18 PGQVVLVEGAIHFSNA-KEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRP 75 P + E HF + S + RI+ + PG + G + + D L Sbjct: 3 PTIQISPEAQAHFRQLLSDPARSGASLRIYVLNPGSREAHCGIGYRSADTPGGDEATLAF 62 Query: 76 PVLGM----IMEHFISGDPII--HNGGLGDMKLDDMGSGDFIESDS--AVVQRIKEVLDN 127 + ++ G + G G + + + E D+ ++ +RI VL+ Sbjct: 63 EGFELHYRPTQAFYLEGVVVDYRDAGRGGRLTMKAPNAARLPEPDAMQSLEERITHVLET 122 Query: 128 RVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 + P +A G + + + G + G C GC +TL V L VP + I Sbjct: 123 EINPDLAAHDGSVTVERVDEQGRALIRFAGGCQGCAVVDQTLTGLVEKTLLARVPALTGI 182 Query: 187 RTV 189 R V Sbjct: 183 RDV 185 >gi|118470355|ref|YP_886620.1| hypothetical protein MSMEG_2268 [Mycobacterium smegmatis str. MC2 155] gi|118171642|gb|ABK72538.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length = 295 Score = 77.9 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%) Query: 128 RVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 +VRP + GGD+ G F+ + GAC+GC ++ TL+ V L V V + Sbjct: 100 QVRPQLRSHGGDVTLVRIESGTAFVRLEGACNGCSMSAVTLRQLVETALLEGVQGVSKVE 159 >gi|77459326|ref|YP_348833.1| HesB/YadR/YfhF [Pseudomonas fluorescens Pf0-1] gi|123604407|sp|Q3KBL2|NFUA_PSEPF RecName: Full=Fe/S biogenesis protein nfuA gi|77383329|gb|ABA74842.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 194 Score = 77.5 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETL 168 + +DS + +RI L + P +A GG + DGI L G C GC A TL Sbjct: 103 MVNADSPINERINYYLQTEINPGLASHGGQVSLIDVVEDGIAVLQFGGGCQGCGQADVTL 162 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ L +PE+K +R V Sbjct: 163 KEGIERTLLERIPELKGVRDV 183 >gi|70731021|ref|YP_260762.1| yhgI protein [Pseudomonas fluorescens Pf-5] gi|123654765|sp|Q4KAH1|NFUA_PSEF5 RecName: Full=Fe/S biogenesis protein nfuA gi|68345320|gb|AAY92926.1| yhgI protein [Pseudomonas fluorescens Pf-5] Length = 194 Score = 77.5 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETL 168 + +DS V +RI L + P +A GG + DGI L G C GC A TL Sbjct: 103 MVNADSPVNERINYYLQTEINPGLASHGGQVSLIDVVEDGIAVLQFGGGCQGCGQADVTL 162 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ L +PE+K +R V Sbjct: 163 KEGIERTLLERIPELKGVRDV 183 >gi|118464609|ref|YP_881874.1| hypothetical protein MAV_2683 [Mycobacterium avium 104] gi|118165896|gb|ABK66793.1| conserved hypothetical protein [Mycobacterium avium 104] Length = 316 Score = 77.5 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 V +R+ + LD+ VRP + GGD+ V L++ G+C CPS++ TL+ V + Sbjct: 92 DVGRRVADALDS-VRPYLGSHGGDVHLLEIVGDTVRLALDGSCKSCPSSAVTLELTVEDA 150 Query: 176 LNHFVPEVKDIRTV 189 + PE+ I V Sbjct: 151 VRSAAPEISSIEVV 164 >gi|91214967|ref|ZP_01251939.1| nifU-like domain protein [Psychroflexus torquis ATCC 700755] gi|91186572|gb|EAS72943.1| nifU-like domain protein [Psychroflexus torquis ATCC 700755] Length = 87 Score = 77.5 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPSASETLKYGVA 173 + + ++ LD +RP + DGGDI D +V + + G C C TLK GV Sbjct: 5 QELRKTVEIALDE-IRPFLKSDGGDIELLSIEDDSLVKVQLLGTCVDCTVNQMTLKSGVE 63 Query: 174 NILNHFVPEVKDIRTV 189 + + P++K++ V Sbjct: 64 MTIKKYAPQIKEVINV 79 >gi|297520132|ref|ZP_06938518.1| putative DNA uptake protein [Escherichia coli OP50] Length = 70 Score = 77.5 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 133 VARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 +A GG + DG L G C+GC TLK G+ L + PE+K +R Sbjct: 2 LAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGVRD 58 >gi|71892342|ref|YP_278076.1| membrane-bound protein in GNT I transport system [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123640816|sp|Q492A3|NFUA_BLOPB RecName: Full=Fe/S biogenesis protein nfuA gi|71796448|gb|AAZ41199.1| membrane-bound protein in GNT I transport system [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 196 Score = 77.5 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 62/179 (34%), Gaps = 14/179 (7%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 + HF+ + R+F + PG F + + + + + Sbjct: 4 ITPIAQKHFTKLLAGKKPGTQIRVFVVNPGTVHAKCNVCFCPPEEFKTSDVVIEFDLFSV 63 Query: 81 IMEHF------ISGDPIIHNGGLGDMKLDDMGSGDFIESD------SAVVQRIKEVLDNR 128 ++ + ++ N + + + + + R++ VL + Sbjct: 64 HVDSVYVSFLKDAKIDVMINELDSQLTIKAPNATKECNNTRNNMNNDLLEDRVRNVLQFQ 123 Query: 129 VRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 + P + GG + D + + G C+GC AS T+K G+ L + PE+K + Sbjct: 124 INPQLELHGGSVSLIRITEDLLAVIKFYGGCNGCAMASYTIKEGIETTLKNLFPELKGV 182 >gi|157736773|ref|YP_001489456.1| NifU-like protein [Arcobacter butzleri RM4018] gi|315635952|ref|ZP_07891213.1| NifU family protein [Arcobacter butzleri JV22] gi|157698627|gb|ABV66787.1| conserved hypothetical NifU-like protein [Arcobacter butzleri RM4018] gi|315479736|gb|EFU70408.1| NifU family protein [Arcobacter butzleri JV22] Length = 92 Score = 77.5 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 +D + + +++N++ P +ARDGG I ++ +F+ ++GAC GC ++S TL Sbjct: 1 MMPFTDEDLQNPVSSIIENKISPMLARDGGAIKLLAIKNARIFVQLQGACVGCSASSSTL 60 Query: 169 KYGVANILNHFV-PEVK 184 KY V L + P+++ Sbjct: 61 KYIVEKELKSAIHPDLE 77 >gi|330808713|ref|YP_004353175.1| Fe/S biogenesis protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376821|gb|AEA68171.1| Fe/S biogenesis protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 194 Score = 77.5 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETL 168 + +DS V +RI L + P +A GG + DGI L G C GC A TL Sbjct: 103 MVNADSPVNERINYYLQTEINPGLASHGGQVSLIDVVEDGIAVLQFGGGCQGCGQADVTL 162 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ L +PE+K +R V Sbjct: 163 KEGIERTLLERIPELKGVRDV 183 >gi|328465264|gb|EGF36521.1| NifU family protein [Listeria monocytogenes 1816] Length = 82 Score = 77.5 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + + L + RP + RDGGD +DG+V + + GAC CPS+ TLK G+ L Sbjct: 7 AEVDKAL-KKFRPFLVRDGGDYELIEVTQDGVVKIKLLGACETCPSSDMTLKMGIELTLA 65 Query: 178 HFV 180 + Sbjct: 66 EKL 68 >gi|15617137|ref|NP_240350.1| hypothetical protein BU544 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219682444|ref|YP_002468828.1| iron-sulfur cluster scaffold protein (YhgI) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|11387308|sp|P57609|NFUA_BUCAI RecName: Full=Fe/S biogenesis protein nfuA gi|254767293|sp|B8D868|NFUA_BUCAT RecName: Full=Fe/S biogenesis protein nfuA gi|25356744|pir||D84993 hypothetical protein [imported] - Buchnera sp. (strain APS) gi|10039202|dbj|BAB13236.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622177|gb|ACL30333.1| iron-sulfur cluster scaffold protein (YhgI) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086840|gb|ADP66921.1| iron-sulfur cluster scaffold protein (YhgI) [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087429|gb|ADP67509.1| iron-sulfur cluster scaffold protein (YhgI) [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087919|gb|ADP67998.1| iron-sulfur cluster scaffold protein (YhgI) [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 192 Score = 77.1 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 61/179 (34%), Gaps = 32/179 (17%) Query: 29 HFSNAKEAEISPLASRIFSI-PGIASVYFGYDFIT-------------------VGKDQY 68 HF++ E R+F + PG + G F V KD Sbjct: 11 HFTSLLSNEPENTQIRVFIVNPGTPNAECGVAFCPENEIELSDIQLKYDGFFVYVNKDTI 70 Query: 69 DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNR 128 +L+ V+ ++ + S + + S + +++K L+ Sbjct: 71 --SYLKNSVIDLVTDKIGSQLTLKAPYAKNNFSKKVSSS---------LEEKVKCFLNLE 119 Query: 129 VRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 + P ++ GG + +GI + G C+GC TLK V L E+K + Sbjct: 120 INPQLSMHGGRVELIKIDKNGIAAIQFSGGCNGCSMIGSTLKETVEKKLLSSFSEIKKV 178 >gi|320162486|ref|YP_004175711.1| hypothetical protein ANT_30850 [Anaerolinea thermophila UNI-1] gi|319996340|dbj|BAJ65111.1| hypothetical protein ANT_30850 [Anaerolinea thermophila UNI-1] Length = 89 Score = 77.1 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 35/73 (47%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +R++ +++ GG + G+ ++ + + GAC GCP + T+ VA + Sbjct: 13 TEERLRALIETLDTYIQQYHGGSVEMVGFDGKVLKVRLGGACEGCPLSPTTINGWVAGTV 72 Query: 177 NHFVPEVKDIRTV 189 F PE++ + V Sbjct: 73 RQFFPEIEKVEAV 85 >gi|300869885|ref|YP_003784756.1| NifU like N terminal domain-containing protein [Brachyspira pilosicoli 95/1000] gi|300687584|gb|ADK30255.1| NifU like N terminal domain protein [Brachyspira pilosicoli 95/1000] Length = 277 Score = 77.1 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 8/99 (8%) Query: 96 GLGDMKLDDMGSGDFIESDSAV-----VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIV 150 L D+ +++ + + ++ + +++I+E ++ + P + DGG IV Sbjct: 179 KLEDILNEELAERERAQKNAPLTTVQKIKKIEEAIETVINPMLKMDGGSCKLVDIEGNIV 238 Query: 151 FLSMRGACSGCPSASETLKYGVANILNHFVP---EVKDI 186 +S +GACS C ++ TLK V + V EV + Sbjct: 239 KISFKGACSSCMASKNTLKGFVEPKIKELVDKDLEVVGV 277 >gi|219681889|ref|YP_002468275.1| iron-sulfur cluster scaffold protein (YhgI) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471594|ref|ZP_05635593.1| iron-sulfur cluster scaffold protein (YhgI) [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|254767292|sp|B8D9W6|NFUA_BUCA5 RecName: Full=Fe/S biogenesis protein nfuA gi|219624732|gb|ACL30887.1| iron-sulfur cluster scaffold protein (YhgI) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 192 Score = 77.1 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 61/179 (34%), Gaps = 32/179 (17%) Query: 29 HFSNAKEAEISPLASRIFSI-PGIASVYFGYDFIT-------------------VGKDQY 68 HF++ E R+F + PG + G F V KD Sbjct: 11 HFTSLLSNEPENTQIRVFIVNPGTPNAECGVAFCPENEIELSDIQLKYDGFFVYVNKDTI 70 Query: 69 DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNR 128 +L+ V+ ++ + S + + S + +++K L+ Sbjct: 71 --SYLKNSVIDLVTDKIGSQLTLKAPYAKNNFSKKVSSS---------LEEKVKCFLNLE 119 Query: 129 VRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 + P ++ GG + +GI + G C+GC TLK V L E+K + Sbjct: 120 INPQLSMHGGRVELMKIDENGIAAIQFSGGCNGCSMIGSTLKETVEKKLLSSFSEIKKV 178 >gi|296125736|ref|YP_003632988.1| Fe-S cluster assembly protein NifU [Brachyspira murdochii DSM 12563] gi|296017552|gb|ADG70789.1| Fe-S cluster assembly protein NifU [Brachyspira murdochii DSM 12563] Length = 277 Score = 77.1 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 8/99 (8%) Query: 96 GLGDMKLDDMGSGDFIESDSAV-----VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIV 150 L D+ +++ + ++ + V++I+E L+ + P + DGG V Sbjct: 179 KLEDILNEELAEMEREAKNAPLTTVQKVKKIEEALERVINPMLKMDGGSCRLVDVDGNKV 238 Query: 151 FLSMRGACSGCPSASETLKYGVANILNHFVP---EVKDI 186 + +GACS C S+ TLK V L V EV + Sbjct: 239 MIEFKGACSSCASSKNTLKGFVEPKLQEIVSKDLEVVGV 277 >gi|75910796|ref|YP_325092.1| nitrogen-fixing NifU-like protein [Anabaena variabilis ATCC 29413] gi|75704521|gb|ABA24197.1| Nitrogen-fixing NifU-like protein [Anabaena variabilis ATCC 29413] Length = 158 Score = 77.1 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVAN 174 ++QR++ L+ VRP + GD+ + V + G CS C +++ TL GV Sbjct: 84 PLLQRVEAALEE-VRPGLKSHHGDVELVAIKPPDTVEVRFIGTCSNCAASTLTLSQGVEQ 142 Query: 175 ILNHFVPEVKDIRTV 189 + PE+ + V Sbjct: 143 AIKALCPEIMTVIAV 157 >gi|288918993|ref|ZP_06413335.1| iron-sulfur cluster assembly accessory protein [Frankia sp. EUN1f] gi|288349639|gb|EFC83874.1| iron-sulfur cluster assembly accessory protein [Frankia sp. EUN1f] Length = 206 Score = 77.1 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 8/120 (6%) Query: 77 VLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARD 136 V + F +P + E+D+ + ++++V+ +RP + D Sbjct: 87 VESLTSSGFTFTNPNATRSCGCGNSFGTPEEPERAEADAKLRAQVEDVMAE-IRPFLQGD 145 Query: 137 GGDIVFKGYRDG-------IVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 GGD+ G V + + GAC+GC SAS T+ + + +PE+ + V Sbjct: 146 GGDVQVVTVLAGNGQPGTAEVHIRLVGACNGCSSASATVTAVIEKRIKESLPEIGRVALV 205 >gi|298373186|ref|ZP_06983176.1| Fe-S cluster assembly protein NifU [Bacteroidetes oral taxon 274 str. F0058] gi|298276090|gb|EFI17641.1| Fe-S cluster assembly protein NifU [Bacteroidetes oral taxon 274 str. F0058] Length = 93 Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ ++ VRP + GGDI V + + GACS CPS T++ + + L Sbjct: 3 LRDKVNHIVAETVRPILRSHGGDIEVVEVEGKNVKVRLLGACSSCPSMQNTMEEIIESTL 62 Query: 177 NHFV 180 + Sbjct: 63 RQEL 66 >gi|284931439|gb|ADC31377.1| conserved hypothetical protein [Mycoplasma gallisepticum str. F] Length = 99 Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 30/53 (56%) Query: 137 GGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 GGD+ F+GY GIV + + G C GC T K GV IL +PEVK + + Sbjct: 27 GGDLSFEGYEKGIVTIRLLGNCDGCSLVDMTYKDGVETILKAEIPEVKSVVLI 79 >gi|288817769|ref|YP_003432116.1| nitrogen-fixing NifU-like protein [Hydrogenobacter thermophilus TK-6] gi|288787168|dbj|BAI68915.1| nitrogen-fixing NifU-like protein [Hydrogenobacter thermophilus TK-6] gi|308751367|gb|ADO44850.1| Rieske (2Fe-2S) iron-sulfur domain protein [Hydrogenobacter thermophilus TK-6] Length = 275 Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 3/107 (2%) Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI 140 +M+ +G I+ I D + IK + +RP + GGD+ Sbjct: 53 LMKEDSAGKDILLKAVREPEIYSLFLKHGIIREDDRT-KAIKAL--ELIRPYIRSHGGDV 109 Query: 141 VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 F ++ +++ +RG C+GC S TL+ + + ++P ++ + Sbjct: 110 EFVDLKEKTLYVRLRGTCTGCSQVSFTLQQTILEAVQAYIPHIEKVE 156 >gi|146281734|ref|YP_001171887.1| Fe-S cluster assembly protein NifU [Pseudomonas stutzeri A1501] gi|145569939|gb|ABP79045.1| Fe-S cluster assembly protein NifU [Pseudomonas stutzeri A1501] Length = 316 Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++RI+ VL++ +RP + RD GD+ +++ + GAC+GC AS TL G+ L Sbjct: 236 IRRIERVLES-IRPTLQRDHGDVELLDVEGKNIYVKLTGACTGCQMASMTL-SGIQQRLI 293 Query: 178 HFVPEVKDIRTV 189 + E + V Sbjct: 294 EELGEFVKVVPV 305 >gi|307720595|ref|YP_003891735.1| nitrogen-fixing NifU domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306978688|gb|ADN08723.1| nitrogen-fixing NifU domain protein [Sulfurimonas autotrophica DSM 16294] Length = 122 Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 D + + +K L +V V GGDI G ++G V++ + GAC GC + T K V Sbjct: 5 DEDIYEAVKNYL-PKVSEYVNSHGGDIKLLGAKEGTVYIELTGACGGCSMSLMTTKIVVQ 63 Query: 174 NILNHFV-PE--VKDI 186 L + PE V ++ Sbjct: 64 KKLRELIHPELVVTNV 79 >gi|152992899|ref|YP_001358620.1| hypothetical protein SUN_1310 [Sulfurovum sp. NBC37-1] gi|151424760|dbj|BAF72263.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 116 Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +D + Q +K L V V GG I G ++G V++ + G C GC + T K V Sbjct: 4 NDQDIYQAVKHHL-PSVNEYVESHGGAIKLLGVKNGTVYIELTGTCHGCSMSLMTTKMVV 62 Query: 173 ANILNHFV-PEVKDI 186 L + PE+ + Sbjct: 63 QKKLRELIHPELNVV 77 >gi|212702241|ref|ZP_03310369.1| hypothetical protein DESPIG_00252 [Desulfovibrio piger ATCC 29098] gi|212674304|gb|EEB34787.1| hypothetical protein DESPIG_00252 [Desulfovibrio piger ATCC 29098] Length = 260 Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 39/92 (42%) Query: 89 DPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG 148 I+ + ++ +Q + + ++ +RP +A DGGDI Sbjct: 160 AEILAAELKQKPLTELRPVSKPRMTNVQRMQLVMKTIEEEIRPQLAADGGDIELVDVDGK 219 Query: 149 IVFLSMRGACSGCPSASETLKYGVANILNHFV 180 V +S+RG C+ C S+ T++ V +L V Sbjct: 220 RVVVSLRGRCAQCRSSEVTIRNLVERVLREHV 251 >gi|323450669|gb|EGB06549.1| hypothetical protein AURANDRAFT_9527 [Aureococcus anophagefferens] Length = 69 Score = 76.4 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 3/64 (4%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDG--IVFLSMRGACSGCPSASETLKYGVANI 175 ++ + +VLD +VRP + DGG++ V L + GAC CPS+++T+K G+ + Sbjct: 4 LENVDKVLD-QVRPYLVADGGNVAVVSADPDSKDVILHLEGACGSCPSSTQTMKMGIERV 62 Query: 176 LNHF 179 L Sbjct: 63 LRER 66 >gi|146307188|ref|YP_001187653.1| HesB/YadR/YfhF-family protein [Pseudomonas mendocina ymp] gi|254767311|sp|A4XUA5|NFUA_PSEMY RecName: Full=Fe/S biogenesis protein nfuA gi|145575389|gb|ABP84921.1| HesB/YadR/YfhF-family protein [Pseudomonas mendocina ymp] Length = 194 Score = 76.4 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETL 168 + DS + +RI L + P +A GG + +GI L G C GC A TL Sbjct: 103 MVNEDSPLNERINYYLQTEINPGLASHGGQVSLVDVVEEGIAVLRFGGGCQGCGQADYTL 162 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ L +PE+K +R V Sbjct: 163 KEGIEKTLLERIPELKGVRDV 183 >gi|183981881|ref|YP_001850172.1| hypothetical protein MMAR_1868 [Mycobacterium marinum M] gi|183175207|gb|ACC40317.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 324 Score = 76.4 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 6/79 (7%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETLKY 170 V +R+ + LD VRP + GGD+ G V L+ G+C CPS++ TL+ Sbjct: 105 DVHRRVSDALDG-VRPYLGSHGGDVELIDVVTGRSGDITVRLAFTGSCKSCPSSAVTLEL 163 Query: 171 GVANILNHFVPEVKDIRTV 189 V + + PE+ I V Sbjct: 164 AVQDAVRAAAPEISAIEVV 182 >gi|154414462|ref|XP_001580258.1| NifU-like domain containing protein [Trichomonas vaginalis G3] gi|121914474|gb|EAY19272.1| NifU-like domain containing protein [Trichomonas vaginalis G3] Length = 103 Score = 76.4 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Query: 97 LGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRG 156 + + + F ++ ++ V++ RVRPA+ DGGDI K DGIV + M G Sbjct: 5 ISHATNSPIFTSFFAKASKEFFDKVNAVIEERVRPALLSDGGDITLKDITDGIVTVQMFG 64 Query: 157 ACSGCPSASETLKYGVANILNHFVP--EVKDIRTV 189 C GCPS TL + + L ++ DI+ + Sbjct: 65 HCVGCPSKQITLNSRILDCLQDEFGDKDIVDIKEI 99 >gi|327479981|gb|AEA83291.1| Fe-S cluster assembly protein NifU [Pseudomonas stutzeri DSM 4166] Length = 316 Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++R++ VL++ +RP + RD GD+ +++ + GAC+GC AS TL G+ L Sbjct: 236 IRRVERVLES-IRPTLQRDHGDVELLDVEGKNIYVKLTGACTGCQMASMTL-SGIQQRLI 293 Query: 178 HFVPEVKDIRTV 189 + E + V Sbjct: 294 EELGEFVKVVPV 305 >gi|288941129|ref|YP_003443369.1| Fe-S cluster assembly protein NifU [Allochromatium vinosum DSM 180] gi|288896501|gb|ADC62337.1| Fe-S cluster assembly protein NifU [Allochromatium vinosum DSM 180] Length = 302 Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 2/99 (2%) Query: 88 GDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD 147 G+ + +G + ++RI+ VLD+ VRP + RD GD+ Sbjct: 188 GESGKSFAPAAGTTPLPVQAGRPRLTTVERIRRIEAVLDS-VRPTLQRDHGDVELVDVDG 246 Query: 148 GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 V++ MRGAC+GC A+ TL G+ + + E + Sbjct: 247 RQVYVKMRGACAGCQMAAVTL-EGIQERMVEALGEFVRV 284 >gi|256372264|ref|YP_003110088.1| nitrogen-fixing NifU domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008848|gb|ACU54415.1| nitrogen-fixing NifU domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 109 Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 3/78 (3%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLK 169 +D + ++++++ ++RPAV DGGD+ G+V + + GACS C ++ T++ Sbjct: 4 PNDERDPEAVRDLIE-QLRPAVQYDGGDLELVDVNTETGVVRVRLTGACSSCAISTSTIQ 62 Query: 170 YGVANILNHFVPEVKDIR 187 GV I+ V + Sbjct: 63 LGVERIVKGRFSWVTAVE 80 >gi|116750110|ref|YP_846797.1| Fe-S cluster assembly protein NifU [Syntrophobacter fumaroxidans MPOB] gi|116699174|gb|ABK18362.1| Fe-S cluster assembly protein NifU [Syntrophobacter fumaroxidans MPOB] Length = 276 Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++ I+E +D +RP++ +DGGDI V ++ RGAC+ C +A+ TLK V L Sbjct: 203 IRLIEETIDQEIRPSLKQDGGDIELVDVVGNRVLVATRGACASCQAANRTLKNFVEVKLR 262 Query: 178 HFV-PEVKDIRTV 189 V PE+ + V Sbjct: 263 ELVLPELV-VEEV 274 >gi|312960571|ref|ZP_07775077.1| Fe/S biogenesis protein [Pseudomonas fluorescens WH6] gi|311285097|gb|EFQ63672.1| Fe/S biogenesis protein [Pseudomonas fluorescens WH6] Length = 194 Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYG 171 +DS V +RI L + P +A GG + DGI L G C GC A TL+ G Sbjct: 106 ADSPVNERINYYLQTEINPGLASHGGQVSLIDVVEDGIAVLKFGGGCQGCGQADVTLREG 165 Query: 172 VANILNHFVPEVKDIRTV 189 + L +PE+K +R V Sbjct: 166 IERTLLERIPELKGVRDV 183 >gi|298492327|ref|YP_003722504.1| Rieske (2Fe-2S) iron-sulfur domain-containing protein ['Nostoc azollae' 0708] gi|298234245|gb|ADI65381.1| Rieske (2Fe-2S) iron-sulfur domain protein ['Nostoc azollae' 0708] Length = 270 Score = 76.0 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 18/137 (13%) Query: 69 DWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV---------- 118 +W+ + V + S + +K D++ S + D +V Sbjct: 20 EWDESQRCVAVGLQRAIESLHKAALTNLVRSLKQDNI-SALYNAVDDEIVYAVLLYHNLV 78 Query: 119 -----QRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGV 172 +RIK L +RP++ D+ + + + + G+CS C S++ TL V Sbjct: 79 KPPLSERIKTAL-TEIRPSLQSHDSDVELVAIKPPDRIDVKLIGSCSNCASSTLTLTQLV 137 Query: 173 ANILNHFVPEVKDIRTV 189 + + PE+ +I V Sbjct: 138 EQTVKKYCPEISNIVAV 154 >gi|222056132|ref|YP_002538494.1| Fe-S cluster assembly protein NifU [Geobacter sp. FRC-32] gi|221565421|gb|ACM21393.1| Fe-S cluster assembly protein NifU [Geobacter sp. FRC-32] Length = 286 Score = 76.0 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +Q I+E L+N VRP + DGGD+ G V ++ R AC+GC S+ T K V L Sbjct: 214 MQLIQETLENEVRPQLWADGGDLELIDIDGGKVQIAFRKACAGCASSGFTAK-FVEQKLR 272 Query: 178 HFVPEVKDIRTV 189 V + + V Sbjct: 273 ELVSDDITVEEV 284 >gi|255024382|ref|ZP_05296368.1| NifU family protein [Listeria monocytogenes FSL J1-208] Length = 67 Score = 76.0 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + + L + RP + RDGGD +DG+V + + GAC CPS+ TLK G+ L Sbjct: 7 AEVDKAL-KKFRPFLVRDGGDYELIEVTQDGVVKIKLLGACETCPSSDMTLKMGIELTLA 65 Query: 178 HF 179 Sbjct: 66 EK 67 >gi|142396|gb|AAA22167.1| nifU protein [Azotobacter vinelandii] Length = 312 Score = 76.0 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 S+ ++RI+ VL +RP + RD GD+ V++ + GAC+GC AS TL G+ Sbjct: 228 SNLQRIRRIETVL-AAIRPTLQRDKGDVELIDVDGKNVYVKLTGACTGCQMASMTL-GGI 285 Query: 173 ANILNHFVPEVKDIRTV 189 L + E + V Sbjct: 286 QQRLIEELGEFVKVIPV 302 >gi|229590129|ref|YP_002872248.1| hypothetical protein PFLU2664 [Pseudomonas fluorescens SBW25] gi|259511745|sp|C3K9S0|NFUA_PSEFS RecName: Full=Fe/S biogenesis protein nfuA gi|229361995|emb|CAY48896.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 194 Score = 75.6 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYG 171 +DS V +RI L + P +A GG + DGI L G C GC A TL+ G Sbjct: 106 ADSPVNERINYYLQTEINPGLASHGGQVSLIDVVDDGIAVLKFGGGCQGCGQADVTLREG 165 Query: 172 VANILNHFVPEVKDIRTV 189 + L +PE+K +R V Sbjct: 166 IERTLLERIPELKGVRDV 183 >gi|15612450|ref|NP_224103.1| NifU-like protein [Helicobacter pylori J99] gi|15646101|ref|NP_208283.1| NifU-like protein [Helicobacter pylori 26695] gi|207092454|ref|ZP_03240241.1| NifU-like protein [Helicobacter pylori HPKX_438_AG0C1] gi|208435360|ref|YP_002267026.1| conserved hypothetical nifU-like protein [Helicobacter pylori G27] gi|210135659|ref|YP_002302098.1| nifu-like protein [Helicobacter pylori P12] gi|217031837|ref|ZP_03437340.1| hypothetical protein HPB128_199g45 [Helicobacter pylori B128] gi|254780002|ref|YP_003058109.1| putative nifU-like protein [Helicobacter pylori B38] gi|298735538|ref|YP_003728059.1| thioredoxin-like protein [Helicobacter pylori B8] gi|308185262|ref|YP_003929395.1| putative nifU-like protein [Helicobacter pylori SJM180] gi|2314672|gb|AAD08534.1| conserved hypothetical nifU-like protein [Helicobacter pylori 26695] gi|4156005|gb|AAD06966.1| putative [Helicobacter pylori J99] gi|208433289|gb|ACI28160.1| conserved hypothetical nifU-like protein [Helicobacter pylori G27] gi|210133627|gb|ACJ08618.1| nifu-like protein [Helicobacter pylori P12] gi|216946489|gb|EEC25091.1| hypothetical protein HPB128_199g45 [Helicobacter pylori B128] gi|254001915|emb|CAX30168.1| Putative nifU-like protein [Helicobacter pylori B38] gi|298354723|emb|CBI65595.1| thioredoxin-like protein [Helicobacter pylori B8] gi|307638148|gb|ADN80598.1| NifU like protein [Helicobacter pylori 908] gi|308061182|gb|ADO03078.1| putative nifU-like protein [Helicobacter pylori SJM180] gi|317010134|gb|ADU80714.1| putative nifU-like protein [Helicobacter pylori India7] gi|317011627|gb|ADU85374.1| putative nifU-like protein [Helicobacter pylori SouthAfrica7] gi|317013262|gb|ADU83870.1| putative nifU-like protein [Helicobacter pylori Lithuania75] gi|317014907|gb|ADU82343.1| putative nifU-like protein [Helicobacter pylori Gambia94/24] gi|325996747|gb|ADZ52152.1| NifU like protein [Helicobacter pylori 2018] gi|325998342|gb|ADZ50550.1| NifU like protein [Helicobacter pylori 2017] Length = 89 Score = 75.6 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD + + ++ V++ ++RP + +DGG+I G + +++++ GAC C S+ TL Sbjct: 1 MIEFSDEDLQKPVRIVIE-KIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 K + L + P ++ + Sbjct: 60 KNVIERQLKMDIHPNLEVV 78 >gi|261840168|gb|ACX99933.1| NifU-like protein [Helicobacter pylori 52] gi|317182697|dbj|BAJ60481.1| conserved hypothetical nifU-like protein [Helicobacter pylori F57] Length = 89 Score = 75.6 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD + + ++ V++ ++RP + +DGG+I G + +++++ GAC C S+ TL Sbjct: 1 MIEFSDEDLQKPVRIVIE-KIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 K + L + P ++ + Sbjct: 60 KNVIERQLKMDIHPNLEVV 78 >gi|330503471|ref|YP_004380340.1| HesB/YadR/YfhF family protein [Pseudomonas mendocina NK-01] gi|328917757|gb|AEB58588.1| HesB/YadR/YfhF-family protein [Pseudomonas mendocina NK-01] Length = 194 Score = 75.6 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETL 168 + DS + +RI L + P +A GG + +GI L G C GC A TL Sbjct: 103 MVNEDSPLNERINYYLQTEINPGLASHGGQVSLVDVVDEGIAVLQFGGGCQGCGQADYTL 162 Query: 169 KYGVANILNHFVPEVKDIRTV 189 K G+ L +PE+K +R V Sbjct: 163 KEGIEKTLLERIPELKGVRDV 183 >gi|217033876|ref|ZP_03439300.1| hypothetical protein HP9810_870g8 [Helicobacter pylori 98-10] gi|216943639|gb|EEC23084.1| hypothetical protein HP9810_870g8 [Helicobacter pylori 98-10] gi|315585879|gb|ADU40260.1| NifU family protein [Helicobacter pylori 35A] gi|317178197|dbj|BAJ55986.1| conserved hypothetical nifU-like protein [Helicobacter pylori F16] gi|317179669|dbj|BAJ57457.1| conserved hypothetical nifU-like protein [Helicobacter pylori F30] Length = 89 Score = 75.6 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD + + ++ V++ ++RP + +DGG+I G + +++++ GAC C S+ TL Sbjct: 1 MIEFSDEDLQKPVRVVIE-KIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 K + L + P ++ + Sbjct: 60 KNVIERQLKMDIHPNLEVV 78 >gi|261838766|gb|ACX98532.1| nifU-like protein [Helicobacter pylori 51] Length = 89 Score = 75.6 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD + + ++ V++ ++RP + +DGG+I G + +++++ GAC C S+ TL Sbjct: 1 MIEFSDEDLQKPVRVVIE-KIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 K + L + P ++ + Sbjct: 60 KNIIERQLKMDIHPNLEVV 78 >gi|296272416|ref|YP_003655047.1| nitrogen-fixing NifU domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296096590|gb|ADG92540.1| nitrogen-fixing NifU domain protein [Arcobacter nitrofigilis DSM 7299] Length = 326 Score = 75.6 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 7/98 (7%) Query: 99 DMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI----VF 151 D +G +VQRIK EVLD +RP +A DGG++ ++ ++ Sbjct: 229 KQAADASAAGQSSFDKMTIVQRIKLIDEVLDGEIRPMLAMDGGNMEIIDIKENTPHYDIY 288 Query: 152 LSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 + GAC+GC S Y + ++L V E + + Sbjct: 289 IRYLGACNGCASGDTGTLYAIESVLKQKVDENIRVLPI 326 >gi|188528263|ref|YP_001910950.1| conserved hypothetical nifU-like protein [Helicobacter pylori Shi470] gi|308183595|ref|YP_003927722.1| conserved hypothetical nifU-like protein [Helicobacter pylori PeCan4] gi|188144503|gb|ACD48920.1| conserved hypothetical nifU-like protein [Helicobacter pylori Shi470] gi|297380653|gb|ADI35540.1| Hypothetical protein HPV225_1523 [Helicobacter pylori v225d] gi|308062756|gb|ADO04644.1| conserved hypothetical nifU-like protein [Helicobacter pylori Cuz20] gi|308064252|gb|ADO06139.1| conserved hypothetical nifU-like protein [Helicobacter pylori Sat464] gi|308065780|gb|ADO07672.1| conserved hypothetical nifU-like protein [Helicobacter pylori PeCan4] gi|317181175|dbj|BAJ58961.1| conserved hypothetical nifU-like protein [Helicobacter pylori F32] Length = 89 Score = 75.6 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD + + ++ V++ ++RP + +DGG+I G + +++++ GAC C S+ TL Sbjct: 1 MIEFSDEDLQKPVRIVIE-KIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 K + L + P ++ + Sbjct: 60 KNVIERQLKTDIHPNLEVV 78 >gi|226942327|ref|YP_002797400.1| nitrogen fixation Fe-S cluster scaffold protein [Azotobacter vinelandii DJ] gi|128318|sp|P05340|NIFU_AZOVI RecName: Full=Nitrogen fixation protein nifU gi|142360|gb|AAA64725.1| nifU protein [Azotobacter vinelandii] gi|226717254|gb|ACO76425.1| Nitrogen fixation Fe-S cluster scaffold protein [Azotobacter vinelandii DJ] Length = 312 Score = 75.6 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 S+ ++RI+ VL +RP + RD GD+ V++ + GAC+GC AS TL G+ Sbjct: 228 SNLQRIRRIETVL-AAIRPTLQRDKGDVELIDVDGKNVYVKLTGACTGCQMASMTL-GGI 285 Query: 173 ANILNHFVPEVKDIRTV 189 L + E + V Sbjct: 286 QQRLIEELGEFVKVIPV 302 >gi|225619753|ref|YP_002721010.1| NifU-like N terminal domain-containing protein [Brachyspira hyodysenteriae WA1] gi|225214572|gb|ACN83306.1| NifU N, NifU-like N terminal domain protein [Brachyspira hyodysenteriae WA1] Length = 277 Score = 75.6 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 3/98 (3%) Query: 92 IHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVF 151 I + ++ + + + + +++I+E L+ + P + DGG V Sbjct: 180 IEDILNEELADMEREAKNAPMTTVQKIKKIEEALERVINPMLKMDGGSCRLVDVDGNKVM 239 Query: 152 LSMRGACSGCPSASETLKYGVANILNHFVP---EVKDI 186 + +GACS C S+ TLK V L V EV + Sbjct: 240 IEFKGACSACASSKNTLKGFVEPKLQELVSKDLEVVGV 277 >gi|226306139|ref|YP_002766099.1| hypothetical protein RER_26520 [Rhodococcus erythropolis PR4] gi|226185256|dbj|BAH33360.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length = 300 Score = 75.6 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 6/128 (4%) Query: 62 TVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD---FIESDSAVV 118 V +D+ + L V+ + + + M DD+ S V Sbjct: 27 PVARDRAE--QLVREVVQLYGAALERTVALADPAMMDAMVRDDLVSSLLLVHGLHPHDVE 84 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 R++ LD+ VRP + GGD+ DG+V L + G+C+ CPS+S TL+ V + + Sbjct: 85 TRVRTALDS-VRPYLGSHGGDVELIEVADGVVRLRLLGSCNSCPSSSVTLETAVQDAVQA 143 Query: 179 FVPEVKDI 186 PE I Sbjct: 144 AAPETTGI 151 >gi|257095889|ref|YP_003169530.1| Fe-S cluster assembly protein NifU [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048413|gb|ACV37601.1| Fe-S cluster assembly protein NifU [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 294 Score = 75.6 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 10/119 (8%) Query: 71 EHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVR 130 E + V G + + P+ G++ G ++ ++RI+E L+ +R Sbjct: 180 EDILIAVNGRL--YANEAKPVKARPAAGEVP------GKPKLTNYQRIRRIEETLE-AIR 230 Query: 131 PAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 P++ RD GD+ +++ + GAC GC + TL GV L + E+ + V Sbjct: 231 PSLQRDHGDVTLVEVDGKKIYVELTGACRGCSMEAATL-GGVQQKLIEALGELVQVLPV 288 >gi|108563846|ref|YP_628162.1| NifU-like protein [Helicobacter pylori HPAG1] gi|107837619|gb|ABF85488.1| conserved hypothetical nifU-like protein [Helicobacter pylori HPAG1] Length = 89 Score = 75.6 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD + + ++ V++ ++RP + +DGG+I G + +++++ GAC C S+ TL Sbjct: 1 MIEFSDEDLQKPVRIVIE-KIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 K + L + P ++ + Sbjct: 60 KNVIERQLKMDIHPNLEVV 78 >gi|229490939|ref|ZP_04384774.1| nitrogen-fixing NifU domain protein [Rhodococcus erythropolis SK121] gi|229322329|gb|EEN88115.1| nitrogen-fixing NifU domain protein [Rhodococcus erythropolis SK121] Length = 300 Score = 75.2 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 6/128 (4%) Query: 62 TVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD---FIESDSAVV 118 V +D+ + L V+ + + + M DD+ S V Sbjct: 27 PVARDRAE--QLVREVVQLYGAALERTVALADPATMDAMVRDDLVSSLLLVHGLHPHDVE 84 Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 R++ LD+ VRP + GGD+ DG+V L + G+C+ CPS+S TL+ V + + Sbjct: 85 TRVRTALDS-VRPYLGSHGGDVELIEVADGVVRLRLLGSCNSCPSSSVTLETAVQDAVQA 143 Query: 179 FVPEVKDI 186 PE I Sbjct: 144 AAPETTGI 151 >gi|224001364|ref|XP_002290354.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220973776|gb|EED92106.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 69 Score = 75.2 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%) Query: 129 VRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETLKYGVANILNHFVPE-VKD 185 VRP + DGG++ + G V+L + GAC C S++ T+K G+ +L + + + Sbjct: 1 VRPYLISDGGNVSVQNVDAGTGNVYLLLEGACGSCASSTVTMKMGIERVLKEKFEDKLGE 60 Query: 186 IRTV 189 + V Sbjct: 61 VIQV 64 >gi|295098862|emb|CBK87951.1| Thioredoxin-like proteins and domains [Eubacterium cylindroides T2-87] Length = 83 Score = 75.2 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILNH 178 E +++RP + DGGDI G + V+++ RGAC+GC A+E G+ +L Sbjct: 12 MAVEACLDKIRPYIQHDGGDIELLGIDEHAYVYVAFRGACAGCMMATEDFSSGIKLLLMD 71 Query: 179 FVPEVKDIRTV 189 VP ++D+ V Sbjct: 72 EVPGIRDVILV 82 >gi|332674262|gb|AEE71079.1| NifU family protein [Helicobacter pylori 83] Length = 89 Score = 75.2 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD + + ++ V++ ++RP + +DGG+I G + +++++ GAC C S+ TL Sbjct: 1 MIEFSDEDLQKPVRVVIE-KIRPYLLKDGGNIEVLGVKSMKIYVTLEGACKTCSSSKITL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 K + L + P ++ + Sbjct: 60 KNVIERQLKMDIHPNLEVV 78 >gi|302343333|ref|YP_003807862.1| nitrogen-fixing NifU domain protein [Desulfarculus baarsii DSM 2075] gi|301639946|gb|ADK85268.1| nitrogen-fixing NifU domain protein [Desulfarculus baarsii DSM 2075] Length = 78 Score = 75.2 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGV 172 D+ +++ L +A+ G++ +G+V + + GACSGC SA TL+ + Sbjct: 2 DALTKDMVEQALQEARAE-LAKHHGNVEVLAVNQEGVVLVRLTGACSGCKSAPLTLRDVI 60 Query: 173 ANILNHFVPEVKDIRT 188 L +P+V + Sbjct: 61 EKSLKARLPQVTRVDA 76 >gi|146282569|ref|YP_001172722.1| yhgI protein [Pseudomonas stutzeri A1501] gi|254767315|sp|A4VLM9|NFUA_PSEU5 RecName: Full=Fe/S biogenesis protein nfuA gi|145570774|gb|ABP79880.1| yhgI protein [Pseudomonas stutzeri A1501] gi|327480826|gb|AEA84136.1| yhgI protein [Pseudomonas stutzeri DSM 4166] Length = 194 Score = 74.8 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 10/129 (7%) Query: 71 EHLRPPVLGMIMEHFISGDPIIHNG---------GLGDMKLDDMGSGDFIESDSAVVQRI 121 + + + + +P + + G + DS + +RI Sbjct: 55 DDIALALKSFTAWIDGTSEPFLEDALVDYATDRMGGQLTIKAPNAKVPMVNEDSPMNERI 114 Query: 122 KEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 L + P +A GG + +GI L G C GC A TLK G+ L + Sbjct: 115 NYYLQTEINPGLASHGGQVTLIDVVEEGIAVLQFGGGCQGCGQADVTLKEGIEKTLLARI 174 Query: 181 PEVKDIRTV 189 PE+K +R V Sbjct: 175 PELKGVRDV 183 >gi|297583815|ref|YP_003699595.1| Scaffold protein Nfu/NifU [Bacillus selenitireducens MLS10] gi|297142272|gb|ADH99029.1| Scaffold protein Nfu/NifU [Bacillus selenitireducens MLS10] Length = 89 Score = 74.8 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 5/83 (6%) Query: 1 MFIQT--EDTPNPATLKFIPGQVVLV-EGAIHFSNAKEAEISPLASRIFSIPGIASVYFG 57 M I+ E TPNP +KF QV+ G+ F +E + + LA + S+ G+ +++ Sbjct: 1 MAIEVRGEPTPNPNAMKFTANQVLFEGSGSASFKKGQETDHA-LAKELLSLDGVDNIFGF 59 Query: 58 YDFITVGKD-QYDWEHLRPPVLG 79 DF+TV K+ +W+ L P + Sbjct: 60 QDFVTVNKEPGAEWDDLLPKIQE 82 >gi|291613274|ref|YP_003523431.1| Fe-S cluster assembly protein NifU [Sideroxydans lithotrophicus ES-1] gi|291583386|gb|ADE11044.1| Fe-S cluster assembly protein NifU [Sideroxydans lithotrophicus ES-1] Length = 296 Score = 74.8 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 15/117 (12%) Query: 71 EHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVR 130 E + V+ E+F G P M ++ +++I+ VL++ +R Sbjct: 180 EEILVKVMAERGENFKPGTPAKEEAAPAGM------------TNLQRIRKIETVLES-IR 226 Query: 131 PAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE-VKDI 186 P + RDGGDI ++++M+GACSGC + TL G+ L + E +K + Sbjct: 227 PQLKRDGGDIELVDVDGKTIYVNMKGACSGCQMEALTL-QGIQQKLMEELKEFIKIV 282 >gi|118580432|ref|YP_901682.1| Fe-S cluster assembly protein NifU [Pelobacter propionicus DSM 2379] gi|118503142|gb|ABK99624.1| Fe-S cluster assembly protein NifU [Pelobacter propionicus DSM 2379] Length = 290 Score = 74.8 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +Q I+EVL+ +RP + DGGD+ V ++ R AC+GC S+ T + V + L Sbjct: 218 MQMIQEVLERDIRPLLWADGGDLELIDIDGPKVQVAFRKACAGCASSGNTARM-VEHKLR 276 Query: 178 HFVPEVKDIRTV 189 V E + V Sbjct: 277 DLVAEDIVVEEV 288 >gi|148263889|ref|YP_001230595.1| Fe-S cluster assembly protein NifU [Geobacter uraniireducens Rf4] gi|146397389|gb|ABQ26022.1| Fe-S cluster assembly protein NifU [Geobacter uraniireducens Rf4] Length = 286 Score = 74.4 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 14/115 (12%) Query: 75 PPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVA 134 P + +I E ++ + K + + +Q I+E L+N VRP + Sbjct: 184 PRIKELIAE-------VMGEQKREEQKKPEKLTNLRK------MQLIQETLENEVRPQLW 230 Query: 135 RDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 DGGD+ G V ++ R AC+GC S+ T K V L V + + V Sbjct: 231 ADGGDLELIDIDGGKVQIAFRKACAGCASSGFTAK-FVEQKLRDLVSDDITVEEV 284 >gi|188997215|ref|YP_001931466.1| nitrogen-fixing NifU domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932282|gb|ACD66912.1| nitrogen-fixing NifU domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 84 Score = 74.4 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 Q ++E+LD +VRPA+ D G+I + VFL + G C CP A T+K V + Sbjct: 8 QEVREILD-KVRPALLADAGNIELVKVENDEVFLKLYGTCQTCPVADMTMKDLVIYTIKE 66 Query: 179 FVPEVKDI 186 +P VK + Sbjct: 67 SLPWVKAV 74 >gi|85858912|ref|YP_461114.1| iscU protein [Syntrophus aciditrophicus SB] gi|85722003|gb|ABC76946.1| iscU protein [Syntrophus aciditrophicus SB] Length = 274 Score = 74.4 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 3/79 (3%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ ++ I++VL+ +RP++ DGGD+ V ++ RGAC+ C ++ +TLK V Sbjct: 196 TNIQKIRMIEDVLEKEIRPSLKNDGGDVELIDVVGNRVLVATRGACAVCRASQQTLKGFV 255 Query: 173 ANILNHFV-PE--VKDIRT 188 L V PE V++++ Sbjct: 256 EFKLRELVTPELIVEEVKA 274 >gi|218282608|ref|ZP_03488846.1| hypothetical protein EUBIFOR_01432 [Eubacterium biforme DSM 3989] gi|218216479|gb|EEC90017.1| hypothetical protein EUBIFOR_01432 [Eubacterium biforme DSM 3989] Length = 79 Score = 74.4 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVANILN 177 + + + LD ++RP + DGGDI G + +V++S +GAC GC ASE G+ +L Sbjct: 8 KAVNDCLD-KIRPYIQHDGGDIELLGVDEFNVVYVSFKGACQGCMMASEDFSSGIKELLL 66 Query: 178 HFVPEVKDIRTV 189 VP ++D+ V Sbjct: 67 EEVPNIRDVVLV 78 >gi|128317|sp|P23121|NIFU_AZOCH RecName: Full=Nitrogen fixation protein nifU gi|142387|gb|AAA22159.1| nifU [Azotobacter chroococcum] Length = 309 Score = 74.4 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 S+ ++RI+ VL +RP + RD GD+ +++ + GAC+GC AS TL G+ Sbjct: 226 SNLQRIRRIETVL-AAIRPTLQRDKGDVELIDVDGKNIYVKLTGACTGCQMASMTL-GGI 283 Query: 173 ANILNHFVPEVKDIRTV 189 L + E + V Sbjct: 284 QQRLIEELGEFVKVIPV 300 >gi|271965282|ref|YP_003339478.1| hypothetical protein Sros_3815 [Streptosporangium roseum DSM 43021] gi|270508457|gb|ACZ86735.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021] Length = 186 Score = 74.1 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 11/133 (8%) Query: 62 TVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGD----MKLDDMGSGDFIESDS-- 115 V + + + L ++ + I+ + + + DD+ SG + D Sbjct: 27 PVTRAKAE--ELVRVLVELYGSGLERVVEIVTDAEAAEVLHRLATDDLVSGLLVLHDLHP 84 Query: 116 -AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVA 173 + +R++ LD VRP + G + G + G+V L ++G C GCPS+ + V Sbjct: 85 LSTAERVRAALD-AVRPQLGLHEGGVELLGVDETGVVRLRLQGTCRGCPSSQLAVTSAVE 143 Query: 174 NILNHFVPEVKDI 186 + PEV + Sbjct: 144 RAVLQAAPEVSGV 156 >gi|225850623|ref|YP_002730857.1| hypothetical protein PERMA_1071 [Persephonella marina EX-H1] gi|225646187|gb|ACO04373.1| conserved domain protein [Persephonella marina EX-H1] Length = 89 Score = 74.1 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 +E Q ++EVL N++RPA+A D G+I + V+L + GACS CP T+ Sbjct: 1 MVEDLKTKEQEVEEVL-NKIRPALALDQGNIKLIKVENNDVYLELLGACSTCPVPDITMN 59 Query: 170 YGVANILNHFVPEVKDI 186 + + H +P V+ + Sbjct: 60 DVIITTIKHLLPWVETV 76 >gi|94986710|ref|YP_594643.1| NifU homolog involved in Fe-S cluster formation [Lawsonia intracellularis PHE/MN1-00] gi|94730959|emb|CAJ54322.1| NifU homolog involved in Fe-S cluster formation [Lawsonia intracellularis PHE/MN1-00] Length = 280 Score = 74.1 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 37/77 (48%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ +Q+I +LD + P + DGG + +V ++MRG C+GC S TL + Sbjct: 202 TNVQRMQKILHLLDEEINPVLKTDGGSVELIDVNGPLVTVAMRGNCTGCKSRQITLSQFI 261 Query: 173 ANILNHFVPEVKDIRTV 189 IL+ V + V Sbjct: 262 EKILHEHVDSDIIVEEV 278 >gi|109948219|ref|YP_665447.1| hypothetical protein Hac_1752 [Helicobacter acinonychis str. Sheeba] gi|109715440|emb|CAK00448.1| conserved hypothetical protein [Helicobacter acinonychis str. Sheeba] Length = 89 Score = 74.1 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD + + + ++ ++RP + +DGG+I G + +++++ GAC C S+ TL Sbjct: 1 MIEFSDEDLQKPVHIAIE-KIRPYLLKDGGNIEVLGIKSMKIYVTLEGACKTCSSSKITL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 K + L + P ++ + Sbjct: 60 KNVIERQLKMDIHPNLEVV 78 >gi|187250848|ref|YP_001875330.1| Fe-S cluster assembly protein NifU [Elusimicrobium minutum Pei191] gi|186971008|gb|ACC97993.1| Fe-S cluster assembly protein NifU [Elusimicrobium minutum Pei191] Length = 284 Score = 74.1 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 3/99 (3%) Query: 89 DPIIHNGGLGDMKLDDMGSGDFIESDSAV--VQRIKEVLDNRVRPAVARDGGDIVFKGYR 146 II ++ + E+ S V V+ ++ VL+ VRP + DGG + Sbjct: 182 QKIIDKVYSCEVSEPEEQQPVVFENMSIVAKVKAVEAVLEKDVRPKLNMDGGSVELVDIE 241 Query: 147 DGIVFLSMRGACSGCPSASETLKYGVANILNHFV-PEVK 184 V + + GAC GC A T+K + + L + P + Sbjct: 242 GTNVKVKLLGACRGCMGAQGTIKMIIESALKDKISPNIT 280 >gi|27904960|ref|NP_778086.1| YhgI [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38372572|sp|Q89A55|NFUA_BUCBP RecName: Full=Fe/S biogenesis protein nfuA gi|27904358|gb|AAO27191.1| YhgI [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 191 Score = 74.1 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 13/171 (7%) Query: 30 FSNAKEAEISPLASRIF-SIPGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISG 88 F N + + R++ PG G + KD + + I+ + Sbjct: 12 FLNLLKKQKYGTNIRVYVKYPGTPVAKCGVSYCY--KDDVTRLDVAFTMNKFIVYVYKPH 69 Query: 89 DPIIHNGGLGDMKLD---------DMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGD 139 P + + + + + ++ + +R++ L+ + P ++ GG Sbjct: 70 IPYLRESKIDINVEECNSQLTLIAPYANKCYFIKNNDLKRRVENFLNLNINPQLSAHGGK 129 Query: 140 IVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 + G + L G C+GC +TLK G+ + E K + + Sbjct: 130 VDLMNITESGYLSLKFSGGCNGCSMVQKTLKEGIEKQILAKFSEFKGVYDI 180 >gi|237752011|ref|ZP_04582491.1| predicted protein [Helicobacter winghamensis ATCC BAA-430] gi|229376578|gb|EEO26669.1| predicted protein [Helicobacter winghamensis ATCC BAA-430] Length = 326 Score = 74.1 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 8/104 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIKEV---LDNRVRPAVARDGGDIVFKGYRDG-- 148 K D GD ++ +VQ+IK + +D ++RP + DGG++ ++G Sbjct: 223 EEESLREKADAQSQGDLKFTEMTMVQKIKAIENTIDEKIRPMLMMDGGNMEIIDLKNGSD 282 Query: 149 ---IVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 V++ GACSGC S++ + + ++L + + V Sbjct: 283 GYTDVYIRYLGACSGCASSATGTLFAIESVLQESLDSSIRVFPV 326 >gi|317129652|ref|YP_004095934.1| Scaffold protein Nfu/NifU [Bacillus cellulosilyticus DSM 2522] gi|315474600|gb|ADU31203.1| Scaffold protein Nfu/NifU [Bacillus cellulosilyticus DSM 2522] Length = 87 Score = 73.7 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 3/80 (3%) Query: 3 IQTEDTPNPATLKFIPGQVVLV-EGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 ++ E TPNP +KF +V+ G+ F + + LA + I G+ +++ DF+ Sbjct: 5 VRAEPTPNPNAMKFTATEVLFEGSGSASFKKGDSPDHA-LAKALLEIDGVDNIFGYQDFV 63 Query: 62 TVGKD-QYDWEHLRPPVLGM 80 TV K+ +W+ L P + Sbjct: 64 TVNKEADVEWDALLPKIEEA 83 >gi|197117955|ref|YP_002138382.1| nitrogen fixation iron-sulfur cluster assembly protein NifU [Geobacter bemidjiensis Bem] gi|197087315|gb|ACH38586.1| nitrogen fixation iron-sulfur cluster assembly protein NifU [Geobacter bemidjiensis Bem] Length = 284 Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +Q I+E L+N +RP + DGGD+ V ++ R AC+GC S+ T K V L Sbjct: 212 MQLIQETLENEIRPQLWADGGDLELIDIDGANVQVAFRKACAGCASSGNTAK-FVEQKLR 270 Query: 178 HFV-PEVKDIRTV 189 V P++ ++ V Sbjct: 271 EMVSPDIT-VQEV 282 >gi|189424665|ref|YP_001951842.1| Fe-S cluster assembly protein NifU [Geobacter lovleyi SZ] gi|189420924|gb|ACD95322.1| Fe-S cluster assembly protein NifU [Geobacter lovleyi SZ] Length = 288 Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 16/115 (13%) Query: 75 PPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVA 134 P + +I E L ++K +Q ++EVL+ +RP + Sbjct: 188 PKIKELIAEVLGQAKEAAAKPKLSNLKK---------------MQLVQEVLERDIRPMLR 232 Query: 135 RDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 DGGD+ V ++ R AC+GC S+ T K V L V E ++ V Sbjct: 233 ADGGDLELIDIDGDHVQIAFRKACAGCASSGNTAK-FVEMKLRELVYEGLHVQEV 286 >gi|119716242|ref|YP_923207.1| NifU domain-containing protein [Nocardioides sp. JS614] gi|119536903|gb|ABL81520.1| nitrogen-fixing NifU domain protein [Nocardioides sp. JS614] Length = 181 Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 36/83 (43%) Query: 106 GSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSAS 165 D +++ + +L V V GG I RDG+V + +RGAC GCP+++ Sbjct: 98 TEAGDAPDDRDLIEAVHRLLAGDVGDYVRSHGGAIELVDVRDGVVGVRLRGACHGCPASA 157 Query: 166 ETLKYGVANILNHFVPEVKDIRT 188 TL+ L P + + Sbjct: 158 FTLRARFERRLRAECPGLVAVEA 180 >gi|253701253|ref|YP_003022442.1| Fe-S cluster assembly protein NifU [Geobacter sp. M21] gi|251776103|gb|ACT18684.1| Fe-S cluster assembly protein NifU [Geobacter sp. M21] Length = 284 Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +Q I+E L+N +RP + DGGD+ V ++ R AC+GC S+ T K V L Sbjct: 212 MQLIQETLENEIRPQLWADGGDLELIDIDGANVQVAFRKACAGCASSGNTAK-FVEQKLR 270 Query: 178 HFV-PEVKDIRTV 189 V P++ ++ V Sbjct: 271 EMVSPDIT-VQEV 282 >gi|124023793|ref|YP_001018100.1| hypothetical protein P9303_21001 [Prochlorococcus marinus str. MIT 9303] gi|123964079|gb|ABM78835.1| Hypothetical protein P9303_21001 [Prochlorococcus marinus str. MIT 9303] Length = 42 Score = 73.3 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 24/39 (61%) Query: 150 VFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 V + ++GAC CPS++ TLK G+ L +PEV ++ Sbjct: 2 VKVCLQGACCSCPSSTMTLKMGIERKLREIIPEVSEVVQ 40 >gi|268317455|ref|YP_003291174.1| Scaffold protein Nfu/NifU [Rhodothermus marinus DSM 4252] gi|262334989|gb|ACY48786.1| Scaffold protein Nfu/NifU [Rhodothermus marinus DSM 4252] Length = 102 Score = 72.9 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 2/87 (2%) Query: 3 IQTEDTPNPATLKFI-PGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 +Q+ TPNP +LKF PGQ + +G + F +A+ A PLA+ +F+I G+ V +F+ Sbjct: 12 LQSHPTPNPNSLKFTAPGQTFIDKGLLSFRSAEAAAAHPLAAALFAIEGVCDVLILPEFV 71 Query: 62 TVGK-DQYDWEHLRPPVLGMIMEHFIS 87 TV K WE + PV+ + + Sbjct: 72 TVTKRPDVPWEAIEAPVMEALRAYLAE 98 >gi|118468815|ref|YP_887052.1| iron-sulfur cluster-binding protein, Rieske family protein [Mycobacterium smegmatis str. MC2 155] gi|118170102|gb|ABK70998.1| iron-sulfur cluster-binding protein, Rieske family protein, putative [Mycobacterium smegmatis str. MC2 155] Length = 307 Score = 72.9 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGY----RDGIVFLSMRGACSGCPSASETLKYG 171 V +RI + LD RVRP + GGD+ + L G+C CPS++ TL+ Sbjct: 98 PVHRRIADALD-RVRPYLGSHGGDVRLLDVVPEADGAVARLRFSGSCKSCPSSAATLELA 156 Query: 172 VANILNHFVPEVKDIRTV 189 +++ + PEV I V Sbjct: 157 ISDAVLAAAPEVSSIEVV 174 >gi|220904348|ref|YP_002479660.1| Fe-S cluster assembly protein NifU [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868647|gb|ACL48982.1| Fe-S cluster assembly protein NifU [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 278 Score = 72.9 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ +Q + + ++ +RP +A DGGDI V +S+RG CS C ++ T++ V Sbjct: 202 TNVQRMQLVLKTIEEEIRPVLAADGGDIELVDVDGLRVVVSLRGRCSQCRASDVTIRDLV 261 Query: 173 ANILNHFV-PEV 183 +L V P++ Sbjct: 262 QRLLREHVEPDI 273 >gi|32491050|ref|NP_871304.1| hypothetical protein WGLp301 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166257|dbj|BAC24447.1| yhgI [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 207 Score = 72.9 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASETLKYGVANI 175 + RI + ++ + GG + ++ + V L G C+GC A TLK G+ Sbjct: 123 LKNRISNFIKYKINSKLEYHGGFVELIDIKENMFVILKFFGGCNGCSMAKVTLKEGIEKE 182 Query: 176 LNHFVPEVKDIRTV 189 + P +K + + Sbjct: 183 IKKNFPNIKGVIDI 196 >gi|225849266|ref|YP_002729430.1| hypothetical protein SULAZ_1463 [Sulfurihydrogenibium azorense Az-Fu1] gi|225643887|gb|ACN98937.1| conserved domain protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 84 Score = 72.1 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 Q +KEVL+ ++RPA+ D G I + VFL + G C CP A T+K V Sbjct: 4 EDKEQEVKEVLE-KIRPALMADAGKIDLVKIENDEVFLKLYGTCQTCPVADMTMKDLVVY 62 Query: 175 ILNHFVPEVKDI 186 + +P VK + Sbjct: 63 TIKESLPWVKAV 74 >gi|51702010|sp|Q8D2Q3|NFUA_WIGBR RecName: Full=Fe/S biogenesis protein nfuA Length = 184 Score = 72.1 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-VFLSMRGACSGCPSASETLKYGVANI 175 + RI + ++ + GG + ++ + V L G C+GC A TLK G+ Sbjct: 100 LKNRISNFIKYKINSKLEYHGGFVELIDIKENMFVILKFFGGCNGCSMAKVTLKEGIEKE 159 Query: 176 LNHFVPEVKDIRTV 189 + P +K + + Sbjct: 160 IKKNFPNIKGVIDI 173 >gi|195361607|ref|XP_002045503.1| GM19271 [Drosophila sechellia] gi|194128907|gb|EDW50950.1| GM19271 [Drosophila sechellia] Length = 110 Score = 72.1 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 24/44 (54%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEG-AIHFSNAKEAEISPLAS 43 MFIQT+DTPNP +LKF+PG VL +G F N A SPL Sbjct: 67 MFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHSSPLGE 110 >gi|148645196|gb|ABR01122.1| NifU [uncultured Geobacter sp.] gi|148645198|gb|ABR01123.1| NifU [uncultured Geobacter sp.] Length = 44 Score = 71.7 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Query: 138 GDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 GD+ DG+V + + GAC CP ++ TLK G+ L V Sbjct: 1 GDVELVEVTADGVVKVKLVGACGHCPMSTMTLKMGIEKTLKEKV 44 >gi|325114501|emb|CBZ50057.1| at4g25910 protein, related [Neospora caninum Liverpool] Length = 285 Score = 71.7 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +++VL++ VRP + GG++ + I L+ +GACSGCPSA +TL G+ L Sbjct: 63 MVEQVLES-VRPYLRSHGGNVKLVELDSENRIARLAFKGACSGCPSAQQTLYEGLQGALR 121 Query: 178 HFVPEVKDIRT 188 P+++ + Sbjct: 122 EVWPDIR-VEE 131 >gi|237756604|ref|ZP_04585121.1| conserved domain protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237691235|gb|EEP60326.1| conserved domain protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 73 Score = 71.7 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 Q ++E+LD +VRPA+ D G+I + VFL + G C CP A T+K V + Sbjct: 8 QEVREILD-KVRPALLADAGNIELVKVENDEVFLKLYGTCQTCPVADMTMKDLVIYTIKE 66 Query: 179 FVPEVK 184 +P VK Sbjct: 67 SLPWVK 72 >gi|332673064|gb|AEE69881.1| NifU family protein [Helicobacter pylori 83] Length = 326 Score = 71.0 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 D SG+ + +VQ+IK +V+D +RP + DGGD+ ++ Sbjct: 224 EAEKLKATADKSQSGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|330443916|ref|YP_004376902.1| NifU-like protein [Chlamydophila pecorum E58] gi|328807026|gb|AEB41199.1| NifU-like protein [Chlamydophila pecorum E58] Length = 275 Score = 71.0 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 4/96 (4%) Query: 90 PIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI 149 P + IE+ AV++ I E ++ P +A DGG + K + I Sbjct: 161 PEFPEMEDANPYDKHTWEAMSIENKIAVLRTITE---EKISPYIALDGGAVSIKTLENNI 217 Query: 150 VFLSMRGACSGCPSASETLKYGVANILNHFV-PEVK 184 V ++ G CSGCPS+ T + +L +V PE++ Sbjct: 218 VTIAYSGNCSGCPSSIGTTLNSIGQLLRTYVYPELQ 253 >gi|120434575|ref|YP_860268.1| NifU-like/thioredoxin-like protein [Gramella forsetii KT0803] gi|117576725|emb|CAL65194.1| protein containing NifU-like domain / thioredoxin-like protein [Gramella forsetii KT0803] Length = 54 Score = 71.0 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Query: 146 RDGIVFLSMRGACSGCPSASETLKYGVANILNHFV-PEVKDIRTV 189 + V + ++GACSGCPS++ TLK G+ +L + +V+ + V Sbjct: 8 ENKTVKVILQGACSGCPSSTMTLKSGIETMLRDMLRDKVEYVEAV 52 >gi|323143850|ref|ZP_08078516.1| putative IscR-regulated protein YhgI [Succinatimonas hippei YIT 12066] gi|322416368|gb|EFY07036.1| putative IscR-regulated protein YhgI [Succinatimonas hippei YIT 12066] Length = 196 Score = 71.0 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 14/152 (9%) Query: 50 GIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSG- 108 G V G + + EH + ++++ S P + + K DD Sbjct: 36 GTPGVECGILYCPKEYITMNDEHFKMDGFEIVID--SSVSPYLDESVIDLSKDDDGNDLL 93 Query: 109 ---------DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGAC 158 + D+ + R+K + V PA+A GG + DG+V + G C Sbjct: 94 TFHAPNLKKQDLPEDATLFDRVKRFFETTVNPALAGHGGAAALEEVTEDGVVKVRFSGGC 153 Query: 159 SGCPSASETLKYGVANILNHFVPE-VKDIRTV 189 +GC TLK G+ + LN P +KD+ V Sbjct: 154 NGCSMVGITLKEGIQSQLNQAFPGMIKDVIDV 185 >gi|315586217|gb|ADU40598.1| NifU family protein [Helicobacter pylori 35A] Length = 326 Score = 71.0 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 D SG+ + +VQ+IK +V+D +RP + DGGD+ ++ Sbjct: 224 EAEKLKATADKSQSGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|119896844|ref|YP_932057.1| nitrogen fixation protein NifU [Azoarcus sp. BH72] gi|119669257|emb|CAL93170.1| probable nitrogen fixation protein NifU [Azoarcus sp. BH72] Length = 296 Score = 71.0 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 4/109 (3%) Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI 140 I E + G + +++I++V++ + RP + RD GDI Sbjct: 179 IEEILAKVLAERGETFKAAPPPEKKAPGKM--TTLERIRKIEQVIE-KARPNLQRDHGDI 235 Query: 141 VFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 +++SM+GAC+GC + TL GV + + E+ + V Sbjct: 236 ELVDVDGKNIYVSMKGACAGCQMEAATL-GGVQAQMIEALGELVKVIPV 283 >gi|261837669|gb|ACX97435.1| NifU scaffold protein [Helicobacter pylori 51] Length = 326 Score = 71.0 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 D SG+ + +VQ+IK +V+D +RP + DGGD+ ++ Sbjct: 224 EAEKLKATADKSQSGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|118340528|gb|ABK80578.1| putative nifU domain protein [uncultured marine Nitrospinaceae bacterium] Length = 92 Score = 70.6 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 7/89 (7%) Query: 1 MFIQT--EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYF-- 56 M +Q E TPN LKF Q +L G F++ +EA+ P+A++IF+ +ASV+ Sbjct: 1 MSVQVTVETTPNEHALKFSVNQQILDSGYKTFNSLEEAKDFPVAAKIFANEAVASVFVMA 60 Query: 57 --GYDFITVG-KDQYDWEHLRPPVLGMIM 82 FITV K + W L+ ++ I Sbjct: 61 QPSSAFITVTKKPETSWGDLQNKIVEGIK 89 >gi|261839079|gb|ACX98844.1| hypothetical protein HPKB_0231 [Helicobacter pylori 52] Length = 326 Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 D SG+ + +VQ+IK +V++ +RP + DGGD+ ++ Sbjct: 224 EAEKLKATADKSQSGELAFREMTMVQKIKAVDKVIEENIRPMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|7387939|sp|Q43909|NIFU_AZOBR RecName: Full=Nitrogen fixation protein nifU gi|1597738|gb|AAC46176.1| nifU [Azospirillum brasilense] Length = 310 Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 2/76 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ +Q+I +++ RP + RDGGD+ +++ + GACSGC ++ T+ GV Sbjct: 229 TNVQRMQKIMFAIED-WRPQIQRDGGDVELVDIDGKDIYVRLTGACSGCSQSAGTM-MGV 286 Query: 173 ANILNHFVPEVKDIRT 188 L + E ++ Sbjct: 287 QAKLVEALGEFVRVKP 302 >gi|242067733|ref|XP_002449143.1| hypothetical protein SORBIDRAFT_05g005735 [Sorghum bicolor] gi|241934986|gb|EES08131.1| hypothetical protein SORBIDRAFT_05g005735 [Sorghum bicolor] Length = 60 Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 23/45 (51%) Query: 145 YRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 +V L ++ AC CP++ T+K G+ L +PE+ + + Sbjct: 3 IDGNVVRLKLQEACGSCPASVTTMKMGIERRLKEKIPEIVAVEPI 47 >gi|296171394|ref|ZP_06852727.1| NifU domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894169|gb|EFG73928.1| NifU domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 187 Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 33/113 (29%), Gaps = 16/113 (14%) Query: 70 WEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRV 129 W L V + E + + + E+L V Sbjct: 66 WRELGDDVRAALGEALLEPQGWTVDESAAP----------------DLEGVAAELLAGPV 109 Query: 130 RPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 A GG I V + M GAC GCP+AS TL+ L + Sbjct: 110 GALAASHGGSIELVSVAGHTVTVRMMGACDGCPAASSTLRDVFERELRRRFDD 162 >gi|322418923|ref|YP_004198146.1| Fe-S cluster assembly protein NifU [Geobacter sp. M18] gi|320125310|gb|ADW12870.1| Fe-S cluster assembly protein NifU [Geobacter sp. M18] Length = 286 Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +Q I+E L+N +RP + DGGD+ V ++ R AC+GC S+ T K V L Sbjct: 214 MQLIQETLENEIRPQLWADGGDLELIDIDGSNVQVAFRKACAGCASSGNTAK-FVEQKLR 272 Query: 178 HFV-PEV 183 V P++ Sbjct: 273 ELVSPDI 279 >gi|268680769|ref|YP_003305200.1| nitrogen-fixing NifU domain protein [Sulfurospirillum deleyianum DSM 6946] gi|268618800|gb|ACZ13165.1| nitrogen-fixing NifU domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 329 Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 8/96 (8%) Query: 93 HNGGLGDMKLDDMGSGDFIESDSAVV---QRIKEVLDNRVRPAVARDGGDIVFKGYRDGI 149 H+ L G D VV Q+I+ V+D +RP + DGG++ ++G Sbjct: 225 HDRLLAISNAQIEGHSSVDFDDLTVVKKFQQIEAVIDENIRPMLVMDGGNLEILDIKEGD 284 Query: 150 -----VFLSMRGACSGCPSASETLKYGVANILNHFV 180 V++ GACSGC S+S + + ++L + Sbjct: 285 DKVTDVYIRYLGACSGCASSSTGTLFAIESVLQEKL 320 >gi|83593605|ref|YP_427357.1| nitrogen-fixing NifU-like [Rhodospirillum rubrum ATCC 11170] gi|83576519|gb|ABC23070.1| Nitrogen-fixing NifU-like [Rhodospirillum rubrum ATCC 11170] Length = 99 Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 ++ EVL+ +RP + RD GDI D +F+++ GAC GC +S TL G+ L Sbjct: 8 AKVAEVLETVIRPRLRRDNGDIELVRIEDHKIFVTLTGACVGCQLSSITL-SGIQQKLME 66 Query: 179 FV 180 V Sbjct: 67 AV 68 >gi|50955615|ref|YP_062903.1| hypothetical protein Lxx21000 [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952097|gb|AAT89798.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 156 Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 36/92 (39%) Query: 95 GGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSM 154 G L S D ++ + ++LD + GG DG+V L + Sbjct: 53 SAPGTWTLSGPASVPPPADDESLRAALVQLLDGAAGDFIRSHGGRPTIVSVHDGVVTLRL 112 Query: 155 RGACSGCPSASETLKYGVANILNHFVPEVKDI 186 G C CP+A +T+ + L PEV+ + Sbjct: 113 GGTCGACPAAGQTVATRITAQLRESHPEVRCV 144 >gi|254778929|ref|YP_003057034.1| [Fe-S] cluster scaffold protein [Helicobacter pylori B38] gi|254000840|emb|CAX28770.1| [Fe-S] cluster scaffold protein [Helicobacter pylori B38] Length = 326 Score = 69.8 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + SG+ + +VQ+IK +V+D +RP + DGGD+ ++ Sbjct: 224 EAEKLKAAANKSQSGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|288957497|ref|YP_003447838.1| nitrogen fixation protein [Azospirillum sp. B510] gi|288909805|dbj|BAI71294.1| nitrogen fixation protein [Azospirillum sp. B510] Length = 307 Score = 69.8 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 2/94 (2%) Query: 95 GGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSM 154 + ++ + ++ ++ I ++ +RP + RDGGD+ +++ + Sbjct: 207 DAIKPLEPRAEPAAAPKLTNVQRMKVIMSAIEE-MRPQIQRDGGDVELVDIDGKDIYVRL 265 Query: 155 RGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 GACSGC ++ T+ GV L + E ++ Sbjct: 266 SGACSGCSQSAGTM-MGVQMKLVEKLGEFVRVKP 298 >gi|221482460|gb|EEE20808.1| hypothetical protein TGGT1_065730 [Toxoplasma gondii GT1] Length = 483 Score = 69.8 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +++VL++ VRP + GG++ IV L+ +GACS CPSA +TL G+ L Sbjct: 262 MVEQVLES-VRPYLRGHGGNVKLVELDSEKKIVRLAFKGACSTCPSAHQTLYEGLQGALR 320 Query: 178 HFVPEVKDIRT 188 P++ + Sbjct: 321 EVWPDL-SVEE 330 >gi|205374729|ref|ZP_03227523.1| NifU-like protein [Bacillus coahuilensis m4-4] Length = 48 Score = 69.8 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 15/34 (44%), Positives = 20/34 (58%) Query: 143 KGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 DG+V L + GAC CPS++ TLK G+ L Sbjct: 1 MDIEDGVVKLRLLGACGSCPSSTITLKAGIERAL 34 >gi|222824470|ref|YP_002576044.1| NifU-like protein [Campylobacter lari RM2100] gi|222539691|gb|ACM64792.1| NifU-like protein [Campylobacter lari RM2100] Length = 323 Score = 69.8 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 11/104 (10%) Query: 93 HNGGLGDMKLDDMGSGDFIESDSAVVQR---IKEVLDNRVRPAVARDGGDIVFKGYRDG- 148 + KL D D D +V++ ++ VLD+ VRP + DGGD+ + Sbjct: 219 TRAEMEREKLKDQSKTDIAFDDMTMVKQLKAVEAVLDSDVRPMLHGDGGDLEVIDIQKSE 278 Query: 149 ----IVFLSMRGACSGCPS-ASETLKYGVANILNHFV-PEVKDI 186 +++ GACSGC S + TL Y + NIL + P ++ I Sbjct: 279 NKNIDIYIRYLGACSGCSSGSGATL-YAIENILQEELSPNIRVI 321 >gi|308063082|gb|ADO04969.1| nifU-like protein [Helicobacter pylori Sat464] Length = 326 Score = 69.8 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + SG+ + +VQ+IK +V+D +RP + DGGD+ ++ Sbjct: 224 EAEKLKATANKSQSGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|15644849|ref|NP_207019.1| nifU-like protein [Helicobacter pylori 26695] gi|2313312|gb|AAD07289.1| nifU-like protein [Helicobacter pylori 26695] Length = 326 Score = 69.8 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + SG+ + +VQ+IK +V+D +RP + DGGD+ ++ Sbjct: 224 EAEKLKATANKSQSGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|297379446|gb|ADI34333.1| Nitrogen fixation protein nifU [Helicobacter pylori v225d] Length = 326 Score = 69.8 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + SG+ + +VQ+IK +V+D +RP + DGGD+ ++ Sbjct: 224 EAEKLKATANKSQSGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|168698909|ref|ZP_02731186.1| NifU-like nitrogen fixation protein [Gemmata obscuriglobus UQM 2246] Length = 76 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 37/73 (50%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + +R++ L + PA+ DG I G+ + + GAC+GCP+ T+ + + L Sbjct: 3 LKERVEHALKVEIAPALMLDGAGIEVLEVTGGVASVRLSGACAGCPATIMTVITSLEDEL 62 Query: 177 NHFVPEVKDIRTV 189 VPEV+ + V Sbjct: 63 RKKVPEVEILEAV 75 >gi|158425034|ref|YP_001526326.1| putative NifU protein [Azorhizobium caulinodans ORS 571] gi|158331923|dbj|BAF89408.1| putative NifU protein [Azorhizobium caulinodans ORS 571] Length = 94 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +RI + + +RP + RDGGD G V + M GAC C AS TL G+ + L Sbjct: 19 ERIIKAVIEEIRPNLQRDGGDCQLLGLEGNKVLVKMTGACVFCKLASMTL-EGIQSRLVE 77 Query: 179 FVPEVKDIRTV 189 + E+ + V Sbjct: 78 RLGELVRVVPV 88 >gi|308061573|gb|ADO03461.1| nifU-like protein [Helicobacter pylori Cuz20] Length = 326 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + SG+ + +VQ+IK +V+D +RP + DGGD+ ++ Sbjct: 224 EAEKLKATANKSQSGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|317177038|dbj|BAJ54827.1| nifU-like protein [Helicobacter pylori F16] Length = 326 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + SG+ + +VQ+IK +V++ +RP + DGGD+ ++ Sbjct: 224 EAEKLKAAANKSQSGELAFREMTMVQKIKAVDKVIEENIRPMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|162146272|ref|YP_001600731.1| nitrogen fixation protein nifU [Gluconacetobacter diazotrophicus PAl 5] gi|209543724|ref|YP_002275953.1| Fe-S cluster assembly protein NifU [Gluconacetobacter diazotrophicus PAl 5] gi|11034776|gb|AAG27073.1|AF105225_9 NifU [Gluconacetobacter diazotrophicus PAl 5] gi|161784847|emb|CAP54390.1| Nitrogen fixation protein nifU [Gluconacetobacter diazotrophicus PAl 5] gi|209531401|gb|ACI51338.1| Fe-S cluster assembly protein NifU [Gluconacetobacter diazotrophicus PAl 5] Length = 309 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 12/142 (8%) Query: 48 IPGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGS 107 + G+ V ++ + + +L + G + + Sbjct: 176 VEGVEGVL----------ERTNAAMVAEGLLDPVQAFVPGGAAPVRGRAQKTSPVAPPAR 225 Query: 108 GDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASET 167 + ++ I+EVL+ +RPA+ DGGD D V + + GAC C A+ T Sbjct: 226 TGGKMTTVQKIRAIEEVLEE-LRPALRNDGGDCELVDVEDNRVMVRLTGACVNCQLAAVT 284 Query: 168 LKYGVANILNHFVPEVKDIRTV 189 + G+ + + + V Sbjct: 285 V-QGIQGRIAERLGTPVRVIPV 305 >gi|317181531|dbj|BAJ59315.1| nifU-like protein [Helicobacter pylori F57] Length = 326 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + SG+ + +VQ+IK +V+D +RP + DGGD+ ++ Sbjct: 224 EAEKLKATANKSQSGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|317050896|ref|YP_004112012.1| nitrogen-fixing NifU domain-containing protein [Desulfurispirillum indicum S5] gi|316945980|gb|ADU65456.1| nitrogen-fixing NifU domain protein [Desulfurispirillum indicum S5] Length = 321 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 6/101 (5%) Query: 95 GGLGDMKLDDMGSGDFIESDSAV--VQRIKEVLDNRVRPAVARDGGDIVFKGYRDG---- 148 + ++ + S ++ S V ++ I E L V+P +ARDGG + ++G Sbjct: 221 AEMDAEQIKEQASATDFKAMSLVGKIKAIDEALTAHVKPMLARDGGSVELVDIKEGDNEI 280 Query: 149 IVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 +VF+ GAC+GC S++ + IL + E + V Sbjct: 281 LVFIQYSGACAGCASSNTGTLQAILGILREKLDERIMVVPV 321 >gi|217034049|ref|ZP_03439471.1| hypothetical protein HP9810_891g53 [Helicobacter pylori 98-10] gi|216943557|gb|EEC23008.1| hypothetical protein HP9810_891g53 [Helicobacter pylori 98-10] Length = 326 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + SG+ + +VQ+IK +V++ +RP + DGGD+ ++ Sbjct: 224 EAEKLKATANKSQSGELAFREMTMVQKIKAVDKVIEENIRPMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|317180027|dbj|BAJ57813.1| nifU-like protein [Helicobacter pylori F32] Length = 326 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + SG+ + +VQ+IK +V++ +RP + DGGD+ ++ Sbjct: 224 EAEKLKATANKSQSGELAFREMTMVQKIKAVDKVIEENIRPMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|223934715|ref|ZP_03626635.1| nitrogen-fixing NifU domain protein [bacterium Ellin514] gi|223896670|gb|EEF63111.1| nitrogen-fixing NifU domain protein [bacterium Ellin514] Length = 305 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + R+ E LD +VRP + GG++ + L ++G C CPS++ TL+ V + + Sbjct: 114 LEARLLEALD-KVRPYMESHGGNVELISLVNDKACLRLQGTCKSCPSSAITLELAVRHAI 172 Query: 177 NHFVPEVK--DIR 187 P++ ++ Sbjct: 173 EEACPDLIGFEVE 185 >gi|226942441|ref|YP_002797514.1| NifU C-terminal domain-containing protein VnfU [Azotobacter vinelandii DJ] gi|732317|sp|P40432|YVN2_AZOVI RecName: Full=Uncharacterized 10.3 kDa protein in vnfA 5'region gi|1088269|gb|AAA82515.1| unknown protein [Azotobacter vinelandii] gi|226717368|gb|ACO76539.1| NifU C-terminal domain-containing protein, VnfU [Azotobacter vinelandii DJ] Length = 96 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Query: 102 LDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGC 161 ++ + + + ++E ++ R+RP V RDGGD+ +D IV L ++GAC GC Sbjct: 9 EENATTLAITPIPAESLPLVRETVE-RLRPGVQRDGGDLELVAVQDNIVRLRLKGACVGC 67 Query: 162 PSASETLKYGVANIL 176 +++TL GV L Sbjct: 68 AMSAQTL-GGVRREL 81 >gi|317179382|dbj|BAJ57170.1| nifU-like protein [Helicobacter pylori F30] Length = 326 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + SG+ + +VQ+IK +V++ +RP + DGGD+ ++ Sbjct: 224 EAEKLKATANKSQSGELAFREMTMVQKIKAVDKVIEENIRPMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|508310|gb|AAA22184.1| nitrogen fixation protein [Azospirillum brasilense] Length = 307 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++RI ++ +RP + RDGGD+ +++ + GACSGC ++ ++ GV L Sbjct: 233 MRRIMFAIEE-LRPQIQRDGGDVELVDIDGKDIYVRLTGACSGCSQSAASM-MGVQAKLV 290 Query: 178 HFVPEVKDIRT 188 + E ++ Sbjct: 291 EALGEFVRVKP 301 >gi|317012066|gb|ADU82674.1| nifu-like protein [Helicobacter pylori Lithuania75] Length = 326 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + +G+ + +VQ+IK +V+D +RP + DGGD+ ++ Sbjct: 224 EAEKLKAAANKSQNGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|319957255|ref|YP_004168518.1| nitrogen-fixing nifu domain protein [Nitratifractor salsuginis DSM 16511] gi|319419659|gb|ADV46769.1| nitrogen-fixing NifU domain protein [Nitratifractor salsuginis DSM 16511] Length = 95 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD + IK L + V G + F G ++G ++ + G C+GC + T Sbjct: 1 MMPFSDEDLCVAIKNYL-PSIEEYVKSHEGTMGFLGVKNGTAYVELGGTCNGCSMSVMTT 59 Query: 169 KYGVANILNHFV-PEVKDIRTV 189 K + L + PE+ ++ ++ Sbjct: 60 KMVIQKKLRELIHPEL-NVESI 80 >gi|237841427|ref|XP_002370011.1| hypothetical protein TGME49_021920 [Toxoplasma gondii ME49] gi|211967675|gb|EEB02871.1| hypothetical protein TGME49_021920 [Toxoplasma gondii ME49] Length = 517 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +++VL++ VRP + GG++ V L+ +GACS CPSA +TL G+ L Sbjct: 296 MVEQVLES-VRPYLRGHGGNVKLVELDSEKKTVRLAFKGACSTCPSAHQTLYEGLQGALR 354 Query: 178 HFVPEVKDIRT 188 P++ + Sbjct: 355 EVWPDL-SVEE 364 >gi|149193836|ref|ZP_01870934.1| NifU family protein [Caminibacter mediatlanticus TB-2] gi|149135789|gb|EDM24267.1| NifU family protein [Caminibacter mediatlanticus TB-2] Length = 321 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 5/95 (5%) Query: 89 DPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG 148 + ++K + S ++ I+E LD +++P +A DGG + R+G Sbjct: 217 KQVNEEMKKEEIKNSAITEDFEKMSLVKKIKAIEEFLDTKIKPMLAMDGGSLELIDIREG 276 Query: 149 ----IVFLSMRGACSGCPSASETLKYGVANILNHF 179 VF+ GACS C S TL + + Sbjct: 277 DGVTTVFVRYLGACSTCASGDMTL-MAIEEEMKKH 310 >gi|282855016|ref|ZP_06264348.1| NifU-like protein [Propionibacterium acnes J139] gi|282581604|gb|EFB86989.1| NifU-like protein [Propionibacterium acnes J139] gi|314982109|gb|EFT26202.1| NifU-like domain protein [Propionibacterium acnes HL110PA3] gi|315090348|gb|EFT62324.1| NifU-like domain protein [Propionibacterium acnes HL110PA4] Length = 180 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 41/199 (20%) Query: 3 IQTEDTPNPATLKFIP--------GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASV 54 + E T +PATL+++ G +V G F N E + + +V Sbjct: 11 VHPETTTDPATLRWVVSGITLPFAGLLVSAPGLDEFLNQVRVEAT-----------VGAV 59 Query: 55 YFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESD 114 TV + WE + + D + + Sbjct: 60 M-----ATVL--EGTWERIGAGFRTALTTALERTDEWVGG-----------PDSKPLNEV 101 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGY----RDGIVFLSMRGACSGCPSASETLKY 170 + + E++ V A GG I + V ++M+GAC GCP+A TL Sbjct: 102 ETLRRCADELIGGPVGAVAAMHGGSIELVDVSVGDEERRVDVAMKGACRGCPAAIMTLHQ 161 Query: 171 GVANILNHFVPEVKDIRTV 189 + L+ + E +R + Sbjct: 162 RLERQLSLRLREPVTVREI 180 >gi|207092082|ref|ZP_03239869.1| nifU-like protein [Helicobacter pylori HPKX_438_AG0C1] Length = 326 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + +G+ + +VQ+IK +V+D +RP + DGGD+ ++ Sbjct: 224 EAEKLKATANKSQNGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|237800690|ref|ZP_04589151.1| yhgI protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023549|gb|EGI03606.1| yhgI protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 197 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 4/84 (4%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD----GIVFLSMRGACSGCPSAS 165 + +DS + +RI L + P +A GG + + I L G C GC A Sbjct: 103 MVNADSPINERINYYLQTEINPGLASHGGQVTLIDVVEEEAKNIAVLQFGGGCQGCGQAD 162 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TLK G+ L +PE+ +R V Sbjct: 163 VTLKEGIERTLLERIPELSGVRDV 186 >gi|28869922|ref|NP_792541.1| yhgI protein [Pseudomonas syringae pv. tomato str. DC3000] gi|71733229|ref|YP_274816.1| yhgI protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|213967039|ref|ZP_03395189.1| yhgI protein [Pseudomonas syringae pv. tomato T1] gi|257487846|ref|ZP_05641887.1| yhgI protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298487191|ref|ZP_07005240.1| Protein yhgI [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301385224|ref|ZP_07233642.1| yhgI protein [Pseudomonas syringae pv. tomato Max13] gi|302063281|ref|ZP_07254822.1| yhgI protein [Pseudomonas syringae pv. tomato K40] gi|302130165|ref|ZP_07256155.1| yhgI protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302186181|ref|ZP_07262854.1| yhgI protein [Pseudomonas syringae pv. syringae 642] gi|51702171|sp|Q881Z4|NFUA_PSESM RecName: Full=Fe/S biogenesis protein nfuA gi|123636367|sp|Q48IG5|NFUA_PSE14 RecName: Full=Fe/S biogenesis protein nfuA gi|28853167|gb|AAO56236.1| yhgI protein [Pseudomonas syringae pv. tomato str. DC3000] gi|71553782|gb|AAZ32993.1| yhgI protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|213928361|gb|EEB61906.1| yhgI protein [Pseudomonas syringae pv. tomato T1] gi|298158215|gb|EFH99286.1| Protein yhgI [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320324604|gb|EFW80681.1| yhgI protein [Pseudomonas syringae pv. glycinea str. B076] gi|320328977|gb|EFW84976.1| yhgI protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330875109|gb|EGH09258.1| yhgI protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330878760|gb|EGH12909.1| yhgI protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330890778|gb|EGH23439.1| yhgI protein [Pseudomonas syringae pv. mori str. 301020] gi|330953380|gb|EGH53640.1| yhgI protein [Pseudomonas syringae Cit 7] gi|330965356|gb|EGH65616.1| yhgI protein [Pseudomonas syringae pv. actinidiae str. M302091] gi|330982174|gb|EGH80277.1| yhgI protein [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330985304|gb|EGH83407.1| yhgI protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331008555|gb|EGH88611.1| yhgI protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331014346|gb|EGH94402.1| yhgI protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 197 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 4/84 (4%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD----GIVFLSMRGACSGCPSAS 165 + +DS + +RI L + P +A GG + + I L G C GC A Sbjct: 103 MVNADSPINERINYYLQTEINPGLASHGGQVTLIDVVEEEAKNIAVLQFGGGCQGCGQAD 162 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TLK G+ L +PE+ +R V Sbjct: 163 VTLKEGIERTLLERIPELSGVRDV 186 >gi|289625119|ref|ZP_06458073.1| HesB/YadR/YfhF:nitrogen-fixing NifU, C-terminal [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330867989|gb|EGH02698.1| HesB/YadR/YfhF:nitrogen-fixing NifU [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 197 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 4/84 (4%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD----GIVFLSMRGACSGCPSAS 165 + +DS + +RI L + P +A GG + + I L G C GC A Sbjct: 103 MVNADSPINERINYYLQTEINPGLASHGGQVTLIDVVEEESKNIAVLQFGGGCQGCGQAD 162 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TLK G+ L +PE+ +R V Sbjct: 163 VTLKEGIERTLLERIPELSGVRDV 186 >gi|223043286|ref|ZP_03613333.1| conserved virulence factor C [Staphylococcus capitis SK14] gi|314933620|ref|ZP_07840985.1| scaffold protein Nfu/NifU N [Staphylococcus caprae C87] gi|222443497|gb|EEE49595.1| conserved virulence factor C [Staphylococcus capitis SK14] gi|313653770|gb|EFS17527.1| scaffold protein Nfu/NifU N [Staphylococcus caprae C87] Length = 84 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Query: 7 DTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK- 65 +TPN T+K + + +++AKE + +R+F I G+ S+++ DFI+V K Sbjct: 8 ETPNHNTMKISLSEPRQDNSSTTYTSAKEGQ-PEFINRLFDIDGVKSIFYVMDFISVDKE 66 Query: 66 DQYDWEHLRPPVLGM 80 D +W+ L P + Sbjct: 67 DDANWDDLLPQIQAA 81 >gi|289673857|ref|ZP_06494747.1| yhgI protein [Pseudomonas syringae pv. syringae FF5] Length = 197 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 4/84 (4%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD----GIVFLSMRGACSGCPSAS 165 + +DS + +RI L + P +A GG + + I L G C GC A Sbjct: 103 MVNADSPINERINYYLQTEINPGLASHGGQVTLIDVVEEEAKNIAVLQFGGGCQGCGQAD 162 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TLK G+ L +PE+ +R V Sbjct: 163 VTLKEGIERTLLERIPELSGVRDV 186 >gi|210134422|ref|YP_002300861.1| nifu-like protein [Helicobacter pylori P12] gi|210132390|gb|ACJ07381.1| nifu-like protein [Helicobacter pylori P12] Length = 326 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + +G+ + +VQ+IK +V+D +RP + DGGD+ ++ Sbjct: 224 EAEKLKATANKSQNGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|330971276|gb|EGH71342.1| HesB/YadR/YfhF:nitrogen-fixing NifU [Pseudomonas syringae pv. aceris str. M302273PT] Length = 197 Score = 68.7 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 4/84 (4%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD----GIVFLSMRGACSGCPSAS 165 + +DS + +RI L + P +A GG + + I L G C GC A Sbjct: 103 MVNADSPINERINYYLQTEINPGLASHGGQVTLIDVVEEEMKNIAVLQFGGGCQGCGQAD 162 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TLK G+ L +PE+ +R V Sbjct: 163 VTLKEGIERTLLERIPELSGVRDV 186 >gi|66045702|ref|YP_235543.1| HesB/YadR/YfhF:nitrogen-fixing NifU, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|75502102|sp|Q4ZTL7|NFUA_PSEU2 RecName: Full=Fe/S biogenesis protein nfuA gi|63256409|gb|AAY37505.1| HesB/YadR/YfhF:Nitrogen-fixing NifU, C-terminal [Pseudomonas syringae pv. syringae B728a] Length = 197 Score = 68.7 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 4/84 (4%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD----GIVFLSMRGACSGCPSAS 165 + +DS + +RI L + P +A GG + + I L G C GC A Sbjct: 103 MVNADSPINERINYYLQTEINPGLASHGGQVTLIDVVEEETKNIAVLQFGGGCQGCGQAD 162 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TLK G+ L +PE+ +R V Sbjct: 163 VTLKEGIERTLLERIPELSGVRDV 186 >gi|71031895|ref|XP_765589.1| hypothetical protein [Theileria parva strain Muguga] gi|68352546|gb|EAN33306.1| hypothetical protein TP01_0062 [Theileria parva] Length = 150 Score = 68.7 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 65 KDQYDWEH-LRPPVLGMIMEHFISGDPIIHNGGLG-DMKLDDMGSGDFIES---DSAVVQ 119 K + W L P + I + G + + K +D ++ E + Sbjct: 15 KYSFPWTLKLAPNLSYTIHKIRWKGFNLNSEPTDSLEYKPNDGKQLEYDEEGWLMDLNTK 74 Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 +++VLD +RP ++ DGG I D V + G+C GCP S TLK + N L F Sbjct: 75 NVEDVLD-LIRPQLSSDGGGISLCKIVDNEVHVKFTGSCVGCPYRSTTLKELIENNLVKF 133 Query: 180 V 180 + Sbjct: 134 I 134 >gi|330945034|gb|EGH46794.1| yhgI protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 197 Score = 68.7 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 4/84 (4%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD----GIVFLSMRGACSGCPSAS 165 + +DS + +RI L + P +A GG + + I L G C GC A Sbjct: 103 MVNADSPINERINYYLQTEINPGLASHGGQVTLIDVVEEEAKNIAVLQFGGGCQGCGQAD 162 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TLK G+ L +PE+ +R V Sbjct: 163 VTLKEGIERTLLERIPELSGVRDV 186 >gi|109947989|ref|YP_665217.1| nifU-like protein [Helicobacter acinonychis str. Sheeba] gi|109715210|emb|CAK00218.1| nifU-like protein [Helicobacter acinonychis str. Sheeba] Length = 326 Score = 68.7 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + SG+ + + +VQ+IK +V+D +RP + DGGD+ ++ Sbjct: 224 EAEKLKAAANKSQSGELVFREMTMVQKIKAVDKVIDENIRPMLVMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|315636035|ref|ZP_07891294.1| NifU family protein [Arcobacter butzleri JV22] gi|315479691|gb|EFU70365.1| NifU family protein [Arcobacter butzleri JV22] Length = 326 Score = 68.7 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 9/104 (8%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIKE---VLDNRVRPAVARDGGDIVFKGYRDGI- 149 + +G S+ +VQRIK VLD +RP + DGG++ ++ + Sbjct: 224 EQEKLKNAANASAAGTISFSEMTLVQRIKAIDSVLDEDIRPMLVMDGGNMEIIDIKENLP 283 Query: 150 ---VFLSMRGACSGCPS-ASETLKYGVANILNHFVPEVKDIRTV 189 +++ G+CSGC S ++ TL Y + +IL + + + + Sbjct: 284 HYDLYIRYLGSCSGCASGSTGTL-YAIESILQQKIDDNIRVLPI 326 >gi|157736864|ref|YP_001489547.1| NifU-like protein [Arcobacter butzleri RM4018] gi|157698718|gb|ABV66878.1| NifU-like protein [Arcobacter butzleri RM4018] Length = 326 Score = 68.7 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 9/104 (8%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIKE---VLDNRVRPAVARDGGDIVFKGYRDGI- 149 + +G S+ +VQRIK VLD +RP + DGG++ ++ + Sbjct: 224 EQEKLKNAANASAAGTISFSEMTLVQRIKAIDSVLDEDIRPMLVMDGGNMEIIDIKENLP 283 Query: 150 ---VFLSMRGACSGCPS-ASETLKYGVANILNHFVPEVKDIRTV 189 +++ G+CSGC S ++ TL Y + +IL + + + + Sbjct: 284 HYDLYIRYLGSCSGCASGSTGTL-YAIESILQQKIDDNIRVLPI 326 >gi|313763388|gb|EFS34752.1| NifU-like domain protein [Propionibacterium acnes HL013PA1] gi|313814688|gb|EFS52402.1| NifU-like domain protein [Propionibacterium acnes HL059PA1] gi|313828234|gb|EFS65948.1| NifU-like domain protein [Propionibacterium acnes HL063PA2] gi|314914534|gb|EFS78365.1| NifU-like domain protein [Propionibacterium acnes HL005PA4] gi|314917602|gb|EFS81433.1| NifU-like domain protein [Propionibacterium acnes HL050PA1] gi|314919642|gb|EFS83473.1| NifU-like domain protein [Propionibacterium acnes HL050PA3] gi|314924272|gb|EFS88103.1| NifU-like domain protein [Propionibacterium acnes HL001PA1] gi|314930285|gb|EFS94116.1| NifU-like domain protein [Propionibacterium acnes HL067PA1] gi|314956856|gb|EFT01010.1| NifU-like domain protein [Propionibacterium acnes HL027PA1] gi|314957641|gb|EFT01744.1| NifU-like domain protein [Propionibacterium acnes HL002PA1] gi|314967390|gb|EFT11489.1| NifU-like domain protein [Propionibacterium acnes HL082PA2] gi|314968976|gb|EFT13074.1| NifU-like domain protein [Propionibacterium acnes HL037PA1] gi|315093631|gb|EFT65607.1| NifU-like domain protein [Propionibacterium acnes HL060PA1] gi|315098013|gb|EFT69989.1| NifU-like domain protein [Propionibacterium acnes HL059PA2] gi|315102641|gb|EFT74617.1| NifU-like domain protein [Propionibacterium acnes HL046PA1] gi|315104468|gb|EFT76444.1| NifU-like domain protein [Propionibacterium acnes HL050PA2] gi|315106211|gb|EFT78187.1| NifU-like domain protein [Propionibacterium acnes HL030PA1] gi|315110456|gb|EFT82432.1| NifU-like domain protein [Propionibacterium acnes HL030PA2] gi|327325471|gb|EGE67275.1| hypothetical protein HMPREF9341_02505 [Propionibacterium acnes HL103PA1] gi|327451220|gb|EGE97874.1| NifU-like domain protein [Propionibacterium acnes HL087PA3] gi|327452577|gb|EGE99231.1| NifU-like domain protein [Propionibacterium acnes HL083PA2] gi|328754783|gb|EGF68399.1| NifU-like domain protein [Propionibacterium acnes HL087PA1] Length = 180 Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 41/199 (20%) Query: 3 IQTEDTPNPATLKFIP--------GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASV 54 + E T +PATL+++ G +V G F N E + + +V Sbjct: 11 VHPETTTDPATLRWVVSGITLPFAGLLVSAPGLDEFLNQVRVEAT-----------VGAV 59 Query: 55 YFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESD 114 TV + WE + + D + + Sbjct: 60 M-----ATVL--EGTWERIGAGFRTALTTALERTDEWVGG-----------PDSKPLNEV 101 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGY----RDGIVFLSMRGACSGCPSASETLKY 170 + + E++ V A GG I + V ++M+GAC GCP+A TL Sbjct: 102 ETLRRCADELIGGPVGAVAAMHGGSIELVDVSVGDEERRVDVTMKGACRGCPAAIMTLHQ 161 Query: 171 GVANILNHFVPEVKDIRTV 189 + L+ + E +R + Sbjct: 162 RLERQLSLRLREPVTVREI 180 >gi|50843141|ref|YP_056368.1| hypothetical protein PPA1678 [Propionibacterium acnes KPA171202] gi|289424869|ref|ZP_06426648.1| NifU-like protein [Propionibacterium acnes SK187] gi|50840743|gb|AAT83410.1| hypothetical protein PPA1678 [Propionibacterium acnes KPA171202] gi|289154568|gb|EFD03254.1| NifU-like protein [Propionibacterium acnes SK187] Length = 181 Score = 68.3 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 41/199 (20%) Query: 3 IQTEDTPNPATLKFIP--------GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASV 54 + E T +PATL+++ G +V G F N E + + +V Sbjct: 12 VHPETTTDPATLRWVVSGITLPFAGLLVSAPGLDEFLNQVRVEAT-----------VGAV 60 Query: 55 YFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESD 114 TV + WE + + D + + Sbjct: 61 M-----ATVL--EGTWERIGAGFRTALTTALERTDEWVGG-----------PDSKPLNEV 102 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGY----RDGIVFLSMRGACSGCPSASETLKY 170 + + E++ V A GG I + V ++M+GAC GCP+A TL Sbjct: 103 ETLRRCADELIGGPVGAVAAMHGGSIELVDVSVGDEERRVDVTMKGACRGCPAAIMTLHQ 162 Query: 171 GVANILNHFVPEVKDIRTV 189 + L+ + E +R + Sbjct: 163 RLERQLSLRLREPVTVREI 181 >gi|326385392|ref|ZP_08207036.1| nitrogen fixation protein nifU [Novosphingobium nitrogenifigens DSM 19370] gi|326210109|gb|EGD60882.1| nitrogen fixation protein nifU [Novosphingobium nitrogenifigens DSM 19370] Length = 307 Score = 68.3 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 9/118 (7%) Query: 63 VGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIK 122 V + L P F +G + ++ D+ + ++ ++ I+ Sbjct: 186 VNAEMVAEGALAPE------RAFRAGVAPLPVKERKIVRTDERAPAKPL-TNLQKIRLIE 238 Query: 123 EVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 E L++ +RP++ RDGGD V + + GAC GC +S T+ GV L + Sbjct: 239 ETLES-IRPSLQRDGGDCELVDVEGNRVMVKLTGACVGCHLSSATI-EGVQARLVEAL 294 >gi|86748105|ref|YP_484601.1| nitrogen-fixing NifU-like protein [Rhodopseudomonas palustris HaA2] gi|86571133|gb|ABD05690.1| Nitrogen-fixing NifU-like protein [Rhodopseudomonas palustris HaA2] Length = 333 Score = 68.3 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 + + E L++ +RP + RDGGD +V++ + G C GC +S TL GV Sbjct: 261 PLTSLVAEALED-LRPHLQRDGGDCELVSVEGNVVYVRLSGNCVGCQLSSVTL-SGVQAR 318 Query: 176 L 176 L Sbjct: 319 L 319 >gi|316936083|ref|YP_004111065.1| Fe-S cluster assembly protein NifU [Rhodopseudomonas palustris DX-1] gi|315603797|gb|ADU46332.1| Fe-S cluster assembly protein NifU [Rhodopseudomonas palustris DX-1] Length = 329 Score = 68.3 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 D ++ + + ++E+ RP + RDGGD F IV++ + G C GC +S TL Sbjct: 254 DAPPQEALIAEAVEEL-----RPHLQRDGGDCEFVSLDGNIVYVRLTGNCVGCQLSSVTL 308 Query: 169 KYGVANILNHFVPEVKDIRTV 189 GV L + V Sbjct: 309 -SGVQARLAEKFGRPLRVVPV 328 >gi|188527026|ref|YP_001909713.1| nifU-like protein [Helicobacter pylori Shi470] gi|188143266|gb|ACD47683.1| nifU-like protein [Helicobacter pylori Shi470] Length = 326 Score = 68.3 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + SG+ + +VQ+IK +V+D +RP + DGGD+ ++ Sbjct: 224 EAEKLKATANKSQSGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSAATGTLFAIENALQE 315 >gi|297616852|ref|YP_003702011.1| nitrogen-fixing NifU domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297144689|gb|ADI01446.1| nitrogen-fixing NifU domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 102 Score = 67.9 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 35/70 (50%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + + + ++L +V P + GD+ F D V + ++GAC C +A T++ + + Sbjct: 1 MKETLVKLLAEKVTPYLQMHAGDVEFVDVVDNCVSIRLKGACQDCSAAQITVETVIKEAI 60 Query: 177 NHFVPEVKDI 186 PE++ + Sbjct: 61 VSRFPEIEKV 70 >gi|228475998|ref|ZP_04060706.1| conserved virulence factor C [Staphylococcus hominis SK119] gi|314936427|ref|ZP_07843774.1| scaffold protein Nfu/NifU N [Staphylococcus hominis subsp. hominis C80] gi|228269821|gb|EEK11301.1| conserved virulence factor C [Staphylococcus hominis SK119] gi|313655046|gb|EFS18791.1| scaffold protein Nfu/NifU N [Staphylococcus hominis subsp. hominis C80] Length = 82 Score = 67.9 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 3/82 (3%) Query: 1 MFIQ-TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 M I+ EDTPN T+K + + +++A++ + +R+F I G+ SV++ D Sbjct: 1 MHIKSIEDTPNYNTIKINLSEKRKDNQSNTYTSAQDGQPD-FINRLFDIEGVKSVFYVMD 59 Query: 60 FITVGKDQ-YDWEHLRPPVLGM 80 FI+V K++ +W+ L P + Sbjct: 60 FISVDKEEYANWDDLVPKIEDT 81 >gi|242373742|ref|ZP_04819316.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W1] gi|242348562|gb|EES40164.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W1] Length = 84 Score = 67.9 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Query: 7 DTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK- 65 +TPN T+K + + +++AKE + +R+F I G+ S+++ DFI+V K Sbjct: 8 ETPNHNTMKISLSEPRQDNSSTTYTSAKEGQPD-FINRLFEIDGVKSIFYVMDFISVDKE 66 Query: 66 DQYDWEHLRPPVLGM 80 D +W+ L P + Sbjct: 67 DDANWDDLLPQIQDA 81 >gi|313683642|ref|YP_004061380.1| nitrogen-fixing nifu domain protein [Sulfuricurvum kujiense DSM 16994] gi|313156502|gb|ADR35180.1| nitrogen-fixing NifU domain protein [Sulfuricurvum kujiense DSM 16994] Length = 324 Score = 67.9 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 12/118 (10%) Query: 73 LRP---PVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKE---VLD 126 ++P + ++ + D GDF +VQ+IK V+D Sbjct: 200 IKPGGHEAREYYLVDILADVRAEMDQEKMRAAADAGSHGDFEA--MTLVQKIKAIDSVID 257 Query: 127 NRVRPAVARDGGDIVFKGYRDG----IVFLSMRGACSGCPSASETLKYGVANILNHFV 180 +R + DGG++ +D V++ GAC+GC S+S Y + L + Sbjct: 258 ESIRQFLIMDGGNMEVIDIKDSPDYIDVYIRYLGACNGCASSSTGTLYAIEATLKEKL 315 >gi|153955633|ref|YP_001396398.1| hypothetical protein CKL_3019 [Clostridium kluyveri DSM 555] gi|219856010|ref|YP_002473132.1| hypothetical protein CKR_2667 [Clostridium kluyveri NBRC 12016] gi|146348491|gb|EDK35027.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219569734|dbj|BAH07718.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 107 Score = 67.5 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 44/73 (60%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++I +V+D +VRP + GDI G +DG+V + + G CSGC SA T++ V + Sbjct: 15 MKEKILKVIDEKVRPYLNSHNGDIEVVGVKDGVVKVKLLGQCSGCISAKYTVQDIVEGSI 74 Query: 177 NHFVPEVKDIRTV 189 + +PE+K + + Sbjct: 75 KNEIPEIKSVEVI 87 >gi|328751973|gb|EGF65589.1| NifU-like domain protein [Propionibacterium acnes HL025PA2] Length = 180 Score = 67.5 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 41/199 (20%) Query: 3 IQTEDTPNPATLKFIP--------GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASV 54 + E T +PATL+++ G +V G F N E + + +V Sbjct: 11 VHPETTTDPATLRWVVSGITLPFAGLLVSAPGLDEFLNQVRVEAT-----------VGAV 59 Query: 55 YFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESD 114 TV + WE + + D GG L+++ + Sbjct: 60 M-----ATVL--EGTWERIGAGFRTALTTALERTDEW--GGGPDSKPLNEVETLRRCAD- 109 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGY----RDGIVFLSMRGACSGCPSASETLKY 170 E++ V A GG I + V ++MRGAC GCP+A TL Sbjct: 110 --------ELIGGPVGAVAAMHGGSIELVDVSVGDEERRVDVTMRGACRGCPAAIMTLHQ 161 Query: 171 GVANILNHFVPEVKDIRTV 189 + L+ + E +R + Sbjct: 162 RLERQLSLRLREPVTVREI 180 >gi|268680559|ref|YP_003304990.1| nitrogen-fixing NifU domain protein [Sulfurospirillum deleyianum DSM 6946] gi|268618590|gb|ACZ12955.1| nitrogen-fixing NifU domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 93 Score = 67.5 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 2/79 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 SD + +++ L+ +++P +A DGG + G + G VF+ ++GAC GCPS+ +TL Sbjct: 1 MIPFSDEELRPAVEKSLE-KIKPMLALDGGGLTLLGIKKGRVFVQLQGACQGCPSSGQTL 59 Query: 169 KYGVANILNHFV-PEVKDI 186 KYG+ L + PE++ + Sbjct: 60 KYGIERQLRIDIHPELEVV 78 >gi|224418982|ref|ZP_03656988.1| NifU-like protein [Helicobacter canadensis MIT 98-5491] gi|253827929|ref|ZP_04870814.1| NifU-like protein [Helicobacter canadensis MIT 98-5491] gi|313142494|ref|ZP_07804687.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|253511335|gb|EES89994.1| NifU-like protein [Helicobacter canadensis MIT 98-5491] gi|313131525|gb|EFR49142.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 326 Score = 67.5 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 8/93 (8%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIKE---VLDNRVRPAVARDGGDIVFKGYRDG-- 148 K D GD +D +VQ+IK ++D ++RP + DGG++ ++ Sbjct: 223 EEEALKNKADLESKGDLKFADMTLVQKIKAIESLIDEKIRPMLMMDGGNMEIIELKNSSD 282 Query: 149 ---IVFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GACSGC S + + + ++L Sbjct: 283 GYTDVYIRYLGACSGCASGATGTLFAIESVLQE 315 >gi|330960949|gb|EGH61209.1| yhgI protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 197 Score = 67.5 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 4/84 (4%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG----IVFLSMRGACSGCPSAS 165 + +DS + +RI L + P +A GG + + I L G C GC A Sbjct: 103 MVNADSPINERINYYLQTEINPGLASHGGQVSLIDVVEEEAKHIAVLQFGGGCQGCGQAD 162 Query: 166 ETLKYGVANILNHFVPEVKDIRTV 189 TLK G+ L +PE+ +R V Sbjct: 163 VTLKEGIERTLLERIPELSGVRDV 186 >gi|192293449|ref|YP_001994054.1| Fe-S cluster assembly protein NifU [Rhodopseudomonas palustris TIE-1] gi|192287198|gb|ACF03579.1| Fe-S cluster assembly protein NifU [Rhodopseudomonas palustris TIE-1] Length = 328 Score = 67.1 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 D ++ + + ++E+ RP + RDGGD F IV++ + G C GC +S TL Sbjct: 253 DAPPQEALIAEAVEEL-----RPHLQRDGGDCEFVSLDGNIVYVRLSGNCVGCQLSSVTL 307 Query: 169 KYGVANILNHFVPEVKDIRTV 189 GV L + V Sbjct: 308 -SGVQAKLVEKFGRPLRVVPV 327 >gi|39937667|ref|NP_949943.1| putative nifU protein [Rhodopseudomonas palustris CGA009] gi|39651526|emb|CAE30049.1| putative nifU protein [Rhodopseudomonas palustris CGA009] Length = 328 Score = 67.1 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 D ++ + + ++E+ RP + RDGGD F IV++ + G C GC +S TL Sbjct: 253 DAPPQEALIAEAVEEL-----RPHLQRDGGDCEFVSLDGNIVYVRLSGNCVGCQLSSVTL 307 Query: 169 KYGVANILNHFVPEVKDIRTV 189 GV L + V Sbjct: 308 -SGVQAKLVEKFGRPLRVVPV 327 >gi|34558480|ref|NP_908295.1| NIFU-like protein [Wolinella succinogenes DSM 1740] gi|34484199|emb|CAE11195.1| NIFU-LIKE PROTEIN [Wolinella succinogenes] Length = 327 Score = 67.1 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 52/104 (50%), Gaps = 8/104 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYR---D 147 + + D SG+ ++ ++VQ++K +V+D+ +RP + DGG++ R D Sbjct: 224 DDEKLKTQADKSASGELGFNEMSMVQKVKAVDKVIDDNIRPMLMMDGGNMEVIDIRSSSD 283 Query: 148 G--IVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 G +++ GAC+GC S+S + + ++L + + V Sbjct: 284 GHTDIYIRYVGACAGCASSSTGTLFAIESVLQQKLDSSIRVFPV 327 >gi|254785693|ref|YP_003073122.1| Fe-S cluster assembly protein NifU [Teredinibacter turnerae T7901] gi|237687387|gb|ACR14651.1| Fe-S cluster assembly protein NifU [Teredinibacter turnerae T7901] Length = 317 Score = 67.1 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++ I++ LD +RP + RD GD+ +++ + GACSGC A+ T+ G+ L Sbjct: 237 IKVIEKALDE-IRPTLQRDHGDVELLDVDGKNIYIKLIGACSGCQLATATV-GGIQQKLM 294 Query: 178 HFVPEVKDIRTV 189 + E + V Sbjct: 295 EALGEFVKVTPV 306 >gi|295131200|ref|YP_003581863.1| NifU-like protein [Propionibacterium acnes SK137] gi|291377366|gb|ADE01221.1| NifU-like protein [Propionibacterium acnes SK137] gi|313773265|gb|EFS39231.1| NifU-like domain protein [Propionibacterium acnes HL074PA1] gi|313812071|gb|EFS49785.1| NifU-like domain protein [Propionibacterium acnes HL083PA1] gi|313829868|gb|EFS67582.1| NifU-like domain protein [Propionibacterium acnes HL007PA1] gi|313834710|gb|EFS72424.1| NifU-like domain protein [Propionibacterium acnes HL056PA1] gi|314974018|gb|EFT18114.1| NifU-like domain protein [Propionibacterium acnes HL053PA1] gi|314975444|gb|EFT19539.1| NifU-like domain protein [Propionibacterium acnes HL045PA1] gi|314984204|gb|EFT28296.1| NifU-like domain protein [Propionibacterium acnes HL005PA1] gi|315097782|gb|EFT69758.1| NifU-like domain protein [Propionibacterium acnes HL038PA1] gi|327325393|gb|EGE67198.1| hypothetical protein HMPREF9338_02623 [Propionibacterium acnes HL096PA2] gi|327443686|gb|EGE90340.1| NifU-like domain protein [Propionibacterium acnes HL043PA1] gi|327449223|gb|EGE95877.1| NifU-like domain protein [Propionibacterium acnes HL043PA2] gi|328761035|gb|EGF74587.1| hypothetical protein HMPREF9343_01274 [Propionibacterium acnes HL099PA1] Length = 180 Score = 67.1 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 67/199 (33%), Gaps = 41/199 (20%) Query: 3 IQTEDTPNPATLKFIP--------GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASV 54 + E T +PATL+++ G +V G F N E + + +V Sbjct: 11 VHPETTTDPATLRWVVSGITLPFAGLLVSAPGLDEFLNQVRVEAT-----------VGAV 59 Query: 55 YFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESD 114 TV + WE + + D + + Sbjct: 60 M-----ATVL--EGTWERIGAGFRTALTTALERTDEWVGG-----------PDSKPLNDV 101 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGY----RDGIVFLSMRGACSGCPSASETLKY 170 + + E++ V A GG I + V ++M+GAC GCP+A TL Sbjct: 102 ETLRRCADELIGGPVGVVAAMHGGSIELVDVSVGDEERRVDVTMKGACRGCPAAIMTLHQ 161 Query: 171 GVANILNHFVPEVKDIRTV 189 + + L+ + E +R + Sbjct: 162 RLEHQLSLRLREPVTVREI 180 >gi|313835870|gb|EFS73584.1| NifU-like domain protein [Propionibacterium acnes HL037PA2] gi|314927130|gb|EFS90961.1| NifU-like domain protein [Propionibacterium acnes HL044PA1] gi|314970772|gb|EFT14870.1| NifU-like domain protein [Propionibacterium acnes HL037PA3] Length = 181 Score = 67.1 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 65/199 (32%), Gaps = 41/199 (20%) Query: 3 IQTEDTPNPATLKFIP--------GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASV 54 + E T +PATL+++ G +V G F N E + + +V Sbjct: 12 VHPETTADPATLRWVVSGITLPFAGLLVSAPGLDEFLNQVRVEAT-----------VGAV 60 Query: 55 YFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESD 114 TV + W + + D + + Sbjct: 61 M-----ATVL--EGTWGRIGAGFRTALTTALERTDEWVGG-----------PDSQPLNEV 102 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGY----RDGIVFLSMRGACSGCPSASETLKY 170 + + E++ V A GG I ++ V ++M+GAC GCP+A TL Sbjct: 103 ETLRRCTDELIAGPVGAVAAMHGGSIELVDVSVDGQERRVDVAMKGACRGCPAAVMTLHQ 162 Query: 171 GVANILNHFVPEVKDIRTV 189 + L+ + E + V Sbjct: 163 RLERQLSLRLHEQVTVHEV 181 >gi|242310610|ref|ZP_04809765.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239523008|gb|EEQ62874.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 326 Score = 67.1 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 8/93 (8%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIKE---VLDNRVRPAVARDGGDIVFKGYRDG-- 148 K D GD +D +VQ+IK ++D ++RP + DGG++ ++ Sbjct: 223 EEESLKNKADLESKGDLKFADMTLVQKIKAIESLIDEKIRPMLMMDGGNMEIIELKNSSD 282 Query: 149 ---IVFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GACSGC S + + + ++L Sbjct: 283 GHTDVYIRYLGACSGCASGATGTLFAIESVLQE 315 >gi|71907146|ref|YP_284733.1| Fe-S cluster assembly protein NifU [Dechloromonas aromatica RCB] gi|71846767|gb|AAZ46263.1| Fe-S cluster assembly protein NifU [Dechloromonas aromatica RCB] Length = 298 Score = 67.1 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 + +I+EVL++ VRP + RD GD+ + +++ ++GACSGC + TL G+ Sbjct: 220 EKIAKIQEVLES-VRPMLLRDHGDVELADVQGKKIYVHLKGACSGCMMEAATL-GGIQQK 277 Query: 176 LNHFVPEVKDI 186 + + E+ + Sbjct: 278 MIETLGELVQV 288 >gi|313837921|gb|EFS75635.1| NifU-like domain protein [Propionibacterium acnes HL086PA1] Length = 180 Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 70/200 (35%), Gaps = 43/200 (21%) Query: 3 IQTEDTPNPATLKFIP--------GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASV 54 + E T +PATL+++ G +V G F N E + + +V Sbjct: 11 VHPETTTDPATLRWVVSGITLPFAGLLVSAPGLDEFLNQVRVEAT-----------VGAV 59 Query: 55 YFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESD 114 TV + WE + + D + + +D Sbjct: 60 M-----ATVL--EGTWERIGAGFRTALTTALERTDEWVGGPDSKSL------------ND 100 Query: 115 SAVVQR-IKEVLDNRVRPAVARDGGDIVFKGY----RDGIVFLSMRGACSGCPSASETLK 169 ++R E++ V A GG I + V ++M+GAC GCP+A TL Sbjct: 101 VETLRRCADELIGGPVGAVAAMHGGSIELVDVSVGDEERRVDVTMKGACRGCPAAIMTLH 160 Query: 170 YGVANILNHFVPEVKDIRTV 189 + + L+ + E +R + Sbjct: 161 QRLEHQLSLRLREPVTVREI 180 >gi|327450183|gb|EGE96837.1| NifU-like domain protein [Propionibacterium acnes HL013PA2] Length = 180 Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 67/199 (33%), Gaps = 41/199 (20%) Query: 3 IQTEDTPNPATLKFIP--------GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASV 54 + E T +PATL+++ G +V G F N E + + +V Sbjct: 11 VHPETTTDPATLRWVVSGITLPFAGLLVSAPGLDEFLNQVRVEAT-----------VGAV 59 Query: 55 YFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESD 114 TV + WE + + D + + Sbjct: 60 M-----ATVL--EGTWERIGAGFRTALTTALERTDEWVGG-----------PDSKPLNDV 101 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGY----RDGIVFLSMRGACSGCPSASETLKY 170 + + E++ V A GG I + V ++M+GAC GCP+A TL Sbjct: 102 ETLRRCADELIGGPVGAVAAMHGGSIELVDVSVGHEERRVDVTMKGACRGCPAAIMTLHQ 161 Query: 171 GVANILNHFVPEVKDIRTV 189 + + L+ + E +R + Sbjct: 162 RLEHQLSLRLREPVTVREI 180 >gi|291277316|ref|YP_003517088.1| NifU-like protein [Helicobacter mustelae 12198] gi|290964510|emb|CBG40362.1| nifU protein homolog [Helicobacter mustelae 12198] Length = 326 Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 9/100 (9%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIKEV---LDNRVRPAVARDGGDIVFKGYRDG-- 148 + + +G+ +D +VQRIK V +++++RP + DGGD+ +D Sbjct: 223 DAEKLKDNVQKNQNGELSFADMTMVQRIKTVDKTINDQIRPMLLMDGGDLEILDIKDSSD 282 Query: 149 ---IVFLSMRGACSGCPSASETLKYGVANILNHFV-PEVK 184 +++ GACSGC SAS + + IL + P+++ Sbjct: 283 GHFDIYIRYMGACSGCASASTGTLFAIEGILQENLDPKIR 322 >gi|39997110|ref|NP_953061.1| NifU family protein [Geobacter sulfurreducens PCA] gi|39984000|gb|AAR35388.1| NifU family protein [Geobacter sulfurreducens PCA] gi|298506123|gb|ADI84846.1| nitrogen fixation iron-sulfur cluster assembly protein NifU [Geobacter sulfurreducens KN400] Length = 285 Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 6/103 (5%) Query: 90 PIIHNGGLGDMKLDDMGSGDFIESDSAV--VQRIKEVLDNRVRPAVARDGGDIVFKGYRD 147 P I + E + + +Q I+E L+ +RP + DGGD+ Sbjct: 183 PKIKEIINEVLGAKPAEEHKRPEKLTNLRKMQLIQETLEKEIRPQLWADGGDLELIDISG 242 Query: 148 GIVFLSMRGACSGCPSASETLKYGVANILNHFVPE---VKDIR 187 V ++ R AC+GC ++ T K V L V E V ++ Sbjct: 243 SEVQIAFRKACAGCAASGNTAK-FVEMKLRELVAEDITVTEVE 284 >gi|329894923|ref|ZP_08270722.1| hypothetical protein IMCC3088_1134 [gamma proteobacterium IMCC3088] gi|328922652|gb|EGG29987.1| hypothetical protein IMCC3088_1134 [gamma proteobacterium IMCC3088] Length = 191 Score = 66.7 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYG 171 DS + RI +L N V PA+A GG++ D I L G C GC +TLK G Sbjct: 103 DDSPIEDRINYILYNEVNPALAAHGGEVSLVEITEDQIAILQFGGGCQGCGMVDQTLKGG 162 Query: 172 VANILNHFVPEVKDIRTV 189 V L VPE++ +R V Sbjct: 163 VEKSLLEQVPELRGVRDV 180 >gi|306821530|ref|ZP_07455130.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550424|gb|EFM38415.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 103 Score = 66.7 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 D Q+++E + + P ++ GDI K ++D IV +++ G CS CP + T + + Sbjct: 5 DILNEQKLEEYIKINILPYISSHKGDIKIKSFKDKIVTITLLGNCSKCPLSQITFEDVIR 64 Query: 174 NILNHFVP-EVKDIR 187 L P ++ D+R Sbjct: 65 QKLLEEFPNQIDDVR 79 >gi|327332413|gb|EGE74149.1| hypothetical protein HMPREF9344_01687 [Propionibacterium acnes HL097PA1] Length = 180 Score = 66.7 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 67/199 (33%), Gaps = 41/199 (20%) Query: 3 IQTEDTPNPATLKFIP--------GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASV 54 + E T +PATL+++ G +V G F N E + + +V Sbjct: 11 VHPETTTDPATLRWVVSGITLPFAGLLVSAPGLDEFLNQVRVEAT-----------VGAV 59 Query: 55 YFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESD 114 TV + WE + + D + + Sbjct: 60 M-----ATVL--EGTWERIGAGFRTALTTALERTDEWVGG-----------PDSKLLNDV 101 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGY----RDGIVFLSMRGACSGCPSASETLKY 170 + + E++ V A GG I + V ++M+GAC GCP+A TL Sbjct: 102 ETLRRCADELIGGPVGAIAAMHGGSIELVDVSVGDEERRVDVTMKGACRGCPAAIMTLHQ 161 Query: 171 GVANILNHFVPEVKDIRTV 189 + + L+ + E +R + Sbjct: 162 RLEHQLSLRLREPITVREI 180 >gi|1709290|sp|Q10373|NIFU2_RHOCA RecName: Full=Nitrogen fixation protein nifU 2 gi|46075|emb|CAA44879.1| nifUII [Rhodobacter capsulatus] gi|249288|gb|AAA08742.1| NifU2 [Rhodobacter capsulatus] Length = 142 Score = 66.7 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 10/80 (12%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL-- 168 E ++AVV L +RP RDGGDI G V + + G+C+GC ++ TL Sbjct: 66 PEEEAAVVAE----LIAEMRPMFQRDGGDIELIGLTGATVQVRLSGSCAGCMMSARTLST 121 Query: 169 --KYGVANILN--HFVPEVK 184 + + VPE++ Sbjct: 122 VQHQLIETLGRPVRVVPEIR 141 >gi|313823479|gb|EFS61193.1| NifU-like domain protein [Propionibacterium acnes HL036PA2] Length = 180 Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 67/199 (33%), Gaps = 41/199 (20%) Query: 3 IQTEDTPNPATLKFIP--------GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASV 54 + E T +PATL+++ G +V G F N E + + +V Sbjct: 11 VHPETTTDPATLRWVVSGITLPFAGLLVSAPGLDEFLNQVRVEAT-----------VGAV 59 Query: 55 YFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESD 114 TV + WE + + D + + Sbjct: 60 M-----ATVL--EGTWERIGAGFRTALTTALERTDEWVGG-----------PDSKPLNDV 101 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGY----RDGIVFLSMRGACSGCPSASETLKY 170 + + E++ V A GG I + V ++M+GAC GCP+A TL Sbjct: 102 ETLRRCADELIGGPVGAGAAMHGGSIELVDVSVGDEERRVDVTMKGACRGCPAAIMTLHQ 161 Query: 171 GVANILNHFVPEVKDIRTV 189 + + L+ + E +R + Sbjct: 162 RLEHQLSLRLREPVTVREI 180 >gi|313793452|gb|EFS41503.1| NifU-like domain protein [Propionibacterium acnes HL110PA1] gi|313801149|gb|EFS42412.1| NifU-like domain protein [Propionibacterium acnes HL110PA2] gi|313808498|gb|EFS46963.1| NifU-like domain protein [Propionibacterium acnes HL087PA2] gi|313812341|gb|EFS50055.1| NifU-like domain protein [Propionibacterium acnes HL025PA1] gi|313819233|gb|EFS56947.1| NifU-like domain protein [Propionibacterium acnes HL046PA2] gi|313821095|gb|EFS58809.1| NifU-like domain protein [Propionibacterium acnes HL036PA1] gi|313827018|gb|EFS64732.1| NifU-like domain protein [Propionibacterium acnes HL063PA1] gi|314925920|gb|EFS89751.1| NifU-like domain protein [Propionibacterium acnes HL036PA3] gi|314960895|gb|EFT04996.1| NifU-like domain protein [Propionibacterium acnes HL002PA2] gi|314963341|gb|EFT07441.1| NifU-like domain protein [Propionibacterium acnes HL082PA1] gi|314988441|gb|EFT32532.1| NifU-like domain protein [Propionibacterium acnes HL005PA2] gi|314988640|gb|EFT32731.1| NifU-like domain protein [Propionibacterium acnes HL005PA3] gi|315079379|gb|EFT51377.1| NifU-like domain protein [Propionibacterium acnes HL053PA2] gi|315080004|gb|EFT51980.1| NifU-like domain protein [Propionibacterium acnes HL078PA1] gi|315083405|gb|EFT55381.1| NifU-like domain protein [Propionibacterium acnes HL027PA2] gi|315086800|gb|EFT58776.1| NifU-like domain protein [Propionibacterium acnes HL002PA3] gi|315089447|gb|EFT61423.1| NifU-like domain protein [Propionibacterium acnes HL072PA1] gi|327328268|gb|EGE70032.1| hypothetical protein HMPREF9337_01932 [Propionibacterium acnes HL096PA3] gi|327451247|gb|EGE97901.1| NifU-like domain protein [Propionibacterium acnes HL092PA1] gi|328756761|gb|EGF70377.1| NifU-like domain protein [Propionibacterium acnes HL020PA1] Length = 180 Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 67/199 (33%), Gaps = 41/199 (20%) Query: 3 IQTEDTPNPATLKFIP--------GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASV 54 + E T +PATL+++ G +V G F N E + + +V Sbjct: 11 VHPETTTDPATLRWVVSGITLPFAGLLVSAPGLDEFLNQVRVEAT-----------VGAV 59 Query: 55 YFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESD 114 TV + WE + + D + + Sbjct: 60 M-----ATVL--EGTWERIGAGFRTALTTALERTDEWVGG-----------PDSKPLNDV 101 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGY----RDGIVFLSMRGACSGCPSASETLKY 170 + + E++ V A GG I + V ++M+GAC GCP+A TL Sbjct: 102 ETLRRCADELIGGPVGAVAAMHGGSIELVDVSVGDEERRVDVTMKGACRGCPAAIMTLHQ 161 Query: 171 GVANILNHFVPEVKDIRTV 189 + + L+ + E +R + Sbjct: 162 RLEHQLSLRLREPVTVREI 180 >gi|289427806|ref|ZP_06429515.1| NifU-like protein [Propionibacterium acnes J165] gi|289158988|gb|EFD07183.1| NifU-like protein [Propionibacterium acnes J165] Length = 181 Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 67/199 (33%), Gaps = 41/199 (20%) Query: 3 IQTEDTPNPATLKFIP--------GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASV 54 + E T +PATL+++ G +V G F N E + + +V Sbjct: 12 VHPETTTDPATLRWVVSGITLPFAGLLVSAPGLDEFLNQVRVEAT-----------VGAV 60 Query: 55 YFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESD 114 TV + WE + + D + + Sbjct: 61 M-----ATVL--EGTWERIGAGFRTALTTALERTDEWVGG-----------PDSKPLNDV 102 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGY----RDGIVFLSMRGACSGCPSASETLKY 170 + + E++ V A GG I + V ++M+GAC GCP+A TL Sbjct: 103 ETLRRCADELIGGPVGAVAAMHGGSIELVDVSVGDEERRVDVTMKGACRGCPAAIMTLHQ 162 Query: 171 GVANILNHFVPEVKDIRTV 189 + + L+ + E +R + Sbjct: 163 RLEHQLSLRLREPVTVREI 181 >gi|124506976|ref|XP_001352085.1| Fe-S-cluster redox enzyme, putative [Plasmodium falciparum 3D7] gi|23505114|emb|CAD51896.1| Fe-S-cluster redox enzyme, putative [Plasmodium falciparum 3D7] Length = 247 Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 36/77 (46%), Gaps = 4/77 (5%) Query: 104 DMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPS 163 + G + E + V+++ ++ RP + D GD+ ++ +++ + G C C S Sbjct: 77 ENDEGLYYELNPENVEKVLNLI----RPKLQIDNGDVELVDIKNNDLYIRLLGNCVTCSS 132 Query: 164 ASETLKYGVANILNHFV 180 S T+ + + L ++ Sbjct: 133 NSITVSHVIKKTLKMYI 149 >gi|332676077|gb|AEE72893.1| hypothetical protein PAZ_c17480 [Propionibacterium acnes 266] Length = 181 Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 67/199 (33%), Gaps = 41/199 (20%) Query: 3 IQTEDTPNPATLKFIP--------GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASV 54 + E T +PATL+++ G +V G F N E + + +V Sbjct: 12 VHPETTTDPATLRWVVSGITLPFAGLLVSAPGLDEFLNQIRVEAT-----------VGAV 60 Query: 55 YFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESD 114 TV + WE + + D + + Sbjct: 61 M-----ATVL--EGTWERIGAGFRTALTTALERTDEWVGG-----------PDSKPLNDV 102 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGY----RDGIVFLSMRGACSGCPSASETLKY 170 + + E++ V A GG I + V ++M+GAC GCP+A TL Sbjct: 103 ETLRRCADELIGGPVGAVAAMHGGSIELVDVSVGDEERRVDVTMKGACRGCPAAIMTLHQ 162 Query: 171 GVANILNHFVPEVKDIRTV 189 + + L+ + E +R + Sbjct: 163 RLEHQLSLRLREPVTVREI 181 >gi|95928565|ref|ZP_01311312.1| nitrogen-fixing NifU-like [Desulfuromonas acetoxidans DSM 684] gi|95135355|gb|EAT17007.1| nitrogen-fixing NifU-like [Desulfuromonas acetoxidans DSM 684] Length = 323 Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 6/75 (8%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDG------IVFLSMRGACSGCPSASETLKYG 171 V+ I+ VLD VRPA+A DGG I + G V + +GAC GC + Sbjct: 246 VKEIEAVLDRHVRPALAGDGGGIELDDVQPGENDGQVYVHVKYKGACKGCAGSVAGTLGF 305 Query: 172 VANILNHFVPEVKDI 186 V +L + E + Sbjct: 306 VQTMLQENLSEAIRV 320 >gi|322378956|ref|ZP_08053370.1| NifU-like protein [Helicobacter suis HS1] gi|322379810|ref|ZP_08054107.1| iron-sulfur cluster assembly scaffold protein [Helicobacter suis HS5] gi|321147778|gb|EFX42381.1| iron-sulfur cluster assembly scaffold protein [Helicobacter suis HS5] gi|321148632|gb|EFX43118.1| NifU-like protein [Helicobacter suis HS1] Length = 326 Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 7/103 (6%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIKEV---LDNRVRPAVARDGGDIVFKGYRDG-- 148 GD + +VQ++K + +D VRP + DGG++ ++G Sbjct: 224 EAEKRKEVAQKSLEGDLAFQEMTMVQKVKAIDKTIDAHVRPMLMMDGGNLEILDIKEGGG 283 Query: 149 --IVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 V++ GAC GC SA+ + + +L + E + + Sbjct: 284 FVDVYIRYMGACDGCASAASGTLFAIEGVLQDQLDEHIRVLPI 326 >gi|224438068|ref|ZP_03659007.1| NifU-like protein [Helicobacter cinaedi CCUG 18818] gi|313144512|ref|ZP_07806705.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313129543|gb|EFR47160.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 324 Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 8/98 (8%) Query: 89 DPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGY 145 + MK GD ++ +VQ++K +V+D +RP + DGGD+ Sbjct: 216 AEVRAEMDKESMKKVADKGGDIAFAEMTMVQKVKAIDKVIDANIRPMLMMDGGDMEILDI 275 Query: 146 RDG-----IVFLSMRGACSGCPSASETLKYGVANILNH 178 +D V++ GACSGC S + Y + ++L Sbjct: 276 KDTSDGFIDVYIRYLGACSGCASGATGTLYAIESVLQE 313 >gi|294944201|ref|XP_002784137.1| hypothetical protein Pmar_PMAR003391 [Perkinsus marinus ATCC 50983] gi|239897171|gb|EER15933.1| hypothetical protein Pmar_PMAR003391 [Perkinsus marinus ATCC 50983] Length = 345 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSGCPSASETLKYGVAN 174 VQ++ LD VRP +A DGG + G D G V + GACS C + + KYG+ + Sbjct: 188 PTVQQVDRALD-AVRPGLAMDGGGVRVLGVEDDGRVRVLFTGACSSCALSDTSTKYGLWD 246 Query: 175 ILNHFVPEVKDIRTV 189 +L+ P + I TV Sbjct: 247 VLSSKFPVLTSIETV 261 >gi|198282439|ref|YP_002218760.1| nitrogen-fixing NifU domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198246960|gb|ACH82553.1| nitrogen-fixing NifU domain protein [Acidithiobacillus ferrooxidans ATCC 53993] Length = 127 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 6/81 (7%) Query: 106 GSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSAS 165 G D + +AV + ++ V R + RDGGDI + V + M+GAC+GCP+A Sbjct: 49 GPDDPLPDPAAVAEAVQTV-----RHILHRDGGDIELVEIIERDVRVRMKGACAGCPNAV 103 Query: 166 ETLKYGVANILNHFVPEVKDI 186 LK V I+ VP V ++ Sbjct: 104 IDLKQVVERIVG-AVPGVVNV 123 >gi|218667291|ref|YP_002424638.1| NifU domain protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519504|gb|ACK80090.1| NifU domain protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 130 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 6/81 (7%) Query: 106 GSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSAS 165 G D + +AV + ++ V R + RDGGDI + V + M+GAC+GCP+A Sbjct: 52 GPDDPLPDPAAVAEAVQTV-----RHILHRDGGDIELVEIIERDVRVRMKGACAGCPNAV 106 Query: 166 ETLKYGVANILNHFVPEVKDI 186 LK V I+ VP V ++ Sbjct: 107 IDLKQVVERIVG-AVPGVVNV 126 >gi|84999846|ref|XP_954644.1| Nifu-like protein [Theileria annulata] gi|65305642|emb|CAI73967.1| Nifu-like protein, putative [Theileria annulata] Length = 150 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 4/91 (4%) Query: 93 HNGGLGDMKLDDMGSGDFIES---DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI 149 + K D+ ++ E + +++V D +RP ++ DGG I D Sbjct: 45 EPKDSSEYKPKDIEQTEYDEEGWLMDLNTKNVEDVFD-LIRPQLSSDGGGINLCKIVDNE 103 Query: 150 VFLSMRGACSGCPSASETLKYGVANILNHFV 180 +++ G+C GCP S TLK + + L F+ Sbjct: 104 IYVKFTGSCVGCPYRSTTLKELIESNLVKFI 134 >gi|152991603|ref|YP_001357324.1| hypothetical protein SUN_0006 [Sulfurovum sp. NBC37-1] gi|151423464|dbj|BAF70967.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 324 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 7/99 (7%) Query: 89 DPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEV---LDNRVRPAVARDGGDIVFKGY 145 + L + G D +VQ+IK V +D +R + DGGD+ Sbjct: 217 EEYEKEKMSAAATLGNEGGSTGAFKDMTIVQKIKAVDKTVDENIRQMLIMDGGDMEILDI 276 Query: 146 RDG----IVFLSMRGACSGCPSASETLKYGVANILNHFV 180 +D +++ GAC+GC SAS + + NIL + Sbjct: 277 KDNGENIDIYIRYLGACNGCASASTGTLFAIENILKEKL 315 >gi|123468395|ref|XP_001317416.1| NifU-like domain containing protein [Trichomonas vaginalis G3] gi|121900149|gb|EAY05193.1| NifU-like domain containing protein [Trichomonas vaginalis G3] Length = 65 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 26/48 (54%) Query: 135 RDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 DGGDIV K DGIV + + G CSGCPS TL G+ L E Sbjct: 1 MDGGDIVLKDITDGIVSVQLMGHCSGCPSRRNTLNAGILGCLQEEFGE 48 >gi|108562648|ref|YP_626964.1| nifU-like protein [Helicobacter pylori HPAG1] gi|107836421|gb|ABF84290.1| nifU-like protein [Helicobacter pylori HPAG1] Length = 326 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + +G+ + +VQ+IK +V+D +R + DGGD+ ++ Sbjct: 224 EAEKLKAAANKSQNGELAFREMTMVQKIKAVDKVIDENIRAMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|317010501|gb|ADU84248.1| nifU-like protein [Helicobacter pylori SouthAfrica7] Length = 326 Score = 66.0 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + +G+ + +VQ+IK +V+D +R + DGGD+ ++ Sbjct: 224 EAEKLKAAANKSQNGELAFREMTMVQKIKAVDKVIDENIRAMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|32266062|ref|NP_860094.1| NifU-like protein [Helicobacter hepaticus ATCC 51449] gi|32262111|gb|AAP77160.1| NifU-like protein [Helicobacter hepaticus ATCC 51449] Length = 326 Score = 66.0 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETLKYGV 172 V+ I +++D +RP + DGGD+ +D V++ GACSGC S + Y + Sbjct: 250 VKSIDKIIDENIRPMLMMDGGDMEILDIKDTSDGFIDVYIRYLGACSGCASGATGTLYAI 309 Query: 173 ANILNHFV 180 ++L + Sbjct: 310 ESVLQEKL 317 >gi|237750884|ref|ZP_04581364.1| predicted protein [Helicobacter bilis ATCC 43879] gi|229373329|gb|EEO23720.1| predicted protein [Helicobacter bilis ATCC 43879] Length = 324 Score = 66.0 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 5/103 (4%) Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI 140 +++ + + + + V+ I +V+D +RP + DGGD+ Sbjct: 211 LVDILAQVRAEMDKESVKKVADKGSEIAFAQMTMVQKVKAIDKVIDANIRPMLMMDGGDM 270 Query: 141 VFKGYRDG-----IVFLSMRGACSGCPSASETLKYGVANILNH 178 +D V++ GACSGC S + Y + ++L Sbjct: 271 EILDIKDTSDGFIDVYIRYLGACSGCASGATGTLYAIESVLQE 313 >gi|254457488|ref|ZP_05070916.1| nitrogen fixation protein NifU [Campylobacterales bacterium GD 1] gi|207086280|gb|EDZ63564.1| nitrogen fixation protein NifU [Campylobacterales bacterium GD 1] Length = 324 Score = 65.6 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 4/104 (3%) Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI 140 +++ + + + ++ + V+D VR + DGGD+ Sbjct: 212 LVDILADTRKEMDEEKMKAAADAGASGDFASMTLVQQIKAVDAVIDESVRQFLVMDGGDM 271 Query: 141 VFKGYRDGI----VFLSMRGACSGCPSASETLKYGVANILNHFV 180 + G +++ GAC+GC S+S Y + + L + Sbjct: 272 EVIDIKKGDEYIDIYIRYLGACNGCASSSTGTLYAIESTLKEKL 315 >gi|78222211|ref|YP_383958.1| Fe-S cluster assembly protein NifU [Geobacter metallireducens GS-15] gi|78193466|gb|ABB31233.1| Fe-S cluster assembly protein NifU [Geobacter metallireducens GS-15] Length = 286 Score = 65.6 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +Q I+E L+ +RP + DGGD+ V ++ R AC+GC S+ T K V L Sbjct: 214 MQLIQETLEKEIRPLLWADGGDLELVDISGSEVQIAFRKACAGCASSGNTAK-FVELKLR 272 Query: 178 HFVPE---VKDIR 187 V + V+++ Sbjct: 273 DLVADDIVVQEVE 285 >gi|317013664|gb|ADU81100.1| nifU-like protein [Helicobacter pylori Gambia94/24] Length = 326 Score = 65.6 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + +G+ + +VQ+IK +V+D +R + DGGD+ ++ Sbjct: 224 EAEKLKATANKSQNGELAFREMTMVQKIKAVDKVIDENIRAMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|15611277|ref|NP_222928.1| nifU-like protein [Helicobacter pylori J99] gi|4154728|gb|AAD05790.1| putative [Helicobacter pylori J99] Length = 326 Score = 65.6 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + +G+ + +VQ+IK +V+D +R + DGGD+ ++ Sbjct: 224 EAEKLKATANKSQNGELAFREMTMVQKIKAVDKVIDENIRAMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|294676126|ref|YP_003576741.1| nitrogen fixation protein NifU [Rhodobacter capsulatus SB 1003] gi|294474946|gb|ADE84334.1| nitrogen fixation protein NifU-1 [Rhodobacter capsulatus SB 1003] Length = 142 Score = 65.6 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 10/79 (12%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL--- 168 E ++AVV L +RP RDGGDI G V + + G+C+GC ++ TL Sbjct: 67 EEEAAVVAE----LIAEMRPMFQRDGGDIELIGLTGATVQVRLSGSCAGCMMSARTLSTV 122 Query: 169 -KYGVANILN--HFVPEVK 184 + + VPE++ Sbjct: 123 QHQLIETLGRPVRVVPEIR 141 >gi|307636912|gb|ADN79362.1| iron-sulfur cluster assembly scaffold protein [Helicobacter pylori 908] gi|325995502|gb|ADZ50907.1| IscU/NifU-like protein [Helicobacter pylori 2018] gi|325997100|gb|ADZ49308.1| nifU like protein [Helicobacter pylori 2017] Length = 326 Score = 65.6 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + +G+ + +VQ+IK +V+D +R + DGGD+ ++ Sbjct: 224 EAEKLKATANKSQNGELAFREMTMVQKIKAVDKVIDENIRTMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|208434169|ref|YP_002265835.1| nifU-like protein [Helicobacter pylori G27] gi|308184024|ref|YP_003928157.1| nifU-like protein [Helicobacter pylori SJM180] gi|208432098|gb|ACI26969.1| nifU-like protein [Helicobacter pylori G27] gi|308059944|gb|ADO01840.1| nifU-like protein [Helicobacter pylori SJM180] Length = 326 Score = 65.6 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + +G+ + +VQ+IK +V+D +R + DGGD+ ++ Sbjct: 224 EAEKLKATANKSQNGELAFREMTMVQKIKAVDKVIDENIRAMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|308182394|ref|YP_003926521.1| nifU-like protein [Helicobacter pylori PeCan4] gi|308064579|gb|ADO06471.1| nifU-like protein [Helicobacter pylori PeCan4] Length = 326 Score = 65.6 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + +G+ + +VQ+IK +V+D +R + DGGD+ ++ Sbjct: 224 EAEKLKATANKSQNGELAFREMTMVQKIKAVDKVIDENIRAMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|317008870|gb|ADU79450.1| nifU-like protein [Helicobacter pylori India7] Length = 326 Score = 65.6 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + +G+ + +VQ+IK +V+D +R + DGGD+ ++ Sbjct: 224 EAEKLKATANKSQNGELAFREMTMVQKIKAVDKVIDENIRAMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|34540487|ref|NP_904966.1| NifU-like protein [Porphyromonas gingivalis W83] gi|188994590|ref|YP_001928842.1| hypothetical protein PGN_0726 [Porphyromonas gingivalis ATCC 33277] gi|34396800|gb|AAQ65865.1| NifU-related protein [Porphyromonas gingivalis W83] gi|188594270|dbj|BAG33245.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC 33277] Length = 94 Score = 65.6 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + ++ VL R+ P + GGD+ +D VF+ GAC CP+A ET++ V ++ Sbjct: 2 TEEIVELVLRERISPLLRSHGGDLSLSQIKDKTVFVRFSGACRFCPAAHETVEKIVQAMI 61 Query: 177 NHF 179 + Sbjct: 62 REY 64 >gi|157164931|ref|YP_001466051.1| acetolactate synthase small subunit [Campylobacter concisus 13826] gi|112801226|gb|EAT98570.1| NifU family protein [Campylobacter concisus 13826] Length = 330 Score = 65.6 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 9/92 (9%) Query: 95 GGLGDMKLDDMGSGDFIESDSAV--VQRIKEVLDNRVRPAVARDGGDIVFKGYRDG---- 148 + + ++ S ES + V ++ I+ ++D +RP + DGG++ R+ Sbjct: 229 EAQANAQANNTLSDVSFESMTMVGQLKAIESIIDKEIRPMLMMDGGNLEILDIRNDNGEN 288 Query: 149 -IVFLSMRGACSGCPS-ASETLKYGVANILNH 178 V++ GACSGC S ++ TL Y + N+L Sbjct: 289 IDVYIRYLGACSGCSSGSTGTL-YAIENVLQE 319 >gi|91975564|ref|YP_568223.1| nitrogen-fixing NifU-like [Rhodopseudomonas palustris BisB5] gi|91682020|gb|ABE38322.1| nitrogen-fixing NifU-like [Rhodopseudomonas palustris BisB5] Length = 331 Score = 65.2 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 I E LD +RP + RDGGD +V++ + G C GC +S TL GV L Sbjct: 264 IAEALDE-LRPHLKRDGGDCELVNVEGNVVYVRLSGNCVGCQLSSLTL-SGVQARL 317 >gi|253583865|ref|ZP_04861063.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251834437|gb|EES63000.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 92 Score = 65.2 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDG--IVFLSMRGACSGCPSASETLKYGVANI 175 +++I++ LD +RP + + GDI + Y + + L + G C CP + +T + + Sbjct: 1 MEKIEKFLDEEIRPELQKHNGDISIEEYDEKSKKLVLRLMGQCCTCPHSIDTTENFIKVS 60 Query: 176 LNHFVPEVK 184 + PE++ Sbjct: 61 IKEKFPEIE 69 >gi|152989911|ref|YP_001355633.1| hypothetical protein NIS_0161 [Nitratiruptor sp. SB155-2] gi|151421772|dbj|BAF69276.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 98 Score = 65.2 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 4/72 (5%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG----IVFLSMRGACSGCPSASETLKY 170 I++ +D +R + DGG++ ++ V++ GAC GC SA+ + Sbjct: 19 EEKWNAIEKAIDEGIRQFLVMDGGNLEIIDIKENGDFIDVYIRYMGACVGCASATTGTLF 78 Query: 171 GVANILNHFVPE 182 G+ + L + E Sbjct: 79 GIEHTLRERLGE 90 >gi|198283350|ref|YP_002219671.1| Fe-S cluster assembly protein NifU [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667946|ref|YP_002425936.1| nitrogen fixation protein nifU [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247871|gb|ACH83464.1| Fe-S cluster assembly protein NifU [Acidithiobacillus ferrooxidans ATCC 53993] gi|218520159|gb|ACK80745.1| nitrogen fixation protein nifU [Acidithiobacillus ferrooxidans ATCC 23270] Length = 291 Score = 65.2 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 +Q+I V+D +RP DGG+I V ++M G+C C S+ T+ G+ L Sbjct: 214 IQKISAVIDE-MRPQFQMDGGNIELVDVDGDTVMVAMSGSCMNCQSSGITI-SGIQERLM 271 >gi|70941449|ref|XP_741011.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56519117|emb|CAH80372.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 236 Score = 65.2 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 32/78 (41%), Gaps = 4/78 (5%) Query: 103 DDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCP 162 + + E + +++ ++ RP + D GD+ + +++ + G C C Sbjct: 65 EKQDEELYYELNPENTEKVLNLI----RPKLQIDNGDVELVDIKGNDLYIRLLGNCVTCS 120 Query: 163 SASETLKYGVANILNHFV 180 S S T+ + L ++ Sbjct: 121 SNSVTISQVIKKTLKMYI 138 >gi|294678787|ref|YP_003579402.1| nitrogen fixation protein NifU [Rhodobacter capsulatus SB 1003] gi|1709289|sp|Q07178|NIFU1_RHOCA RecName: Full=Nitrogen fixation protein nifU 1 gi|297917|emb|CAA48486.1| nifU (copyI) [Rhodobacter capsulatus] gi|294477607|gb|ADE86995.1| nitrogen fixation protein NifU-2 [Rhodobacter capsulatus SB 1003] Length = 135 Score = 65.2 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 9/74 (12%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 V RI+ ++D +RP RDGGDI V + + GAC+GC A +TL YGV + Sbjct: 63 VTRIRALIDE-MRPTFRRDGGDIELVRVEGAKVIVHLSGACAGCMLAGQTL-YGVQKRIT 120 Query: 178 -------HFVPEVK 184 +P+++ Sbjct: 121 DVLGRPFRVIPDIR 134 >gi|315639387|ref|ZP_07894549.1| NifU family protein [Campylobacter upsaliensis JV21] gi|315480713|gb|EFU71355.1| NifU family protein [Campylobacter upsaliensis JV21] Length = 323 Score = 64.8 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 11/116 (9%) Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI 140 +++ + L + DD+ + ++ ++ VLD +RP + DGGD+ Sbjct: 212 LVDILAQTRAEMDKERLKNSTKDDVAFDEMTMVGQ--LKAVEAVLDAEIRPMLQGDGGDM 269 Query: 141 VFKGY---RDG--IVFLSMRGACSGCPS-ASETLKYGVANILNHFV-PEVKDIRTV 189 G +++ GACSGC S + TL Y + +IL + P ++ + V Sbjct: 270 EVIDIQKAEGGAIDIYIRYLGACSGCSSGSGATL-YAIESILQEELSPNIR-VMPV 323 >gi|323138472|ref|ZP_08073541.1| Fe-S cluster assembly protein NifU [Methylocystis sp. ATCC 49242] gi|322396268|gb|EFX98800.1| Fe-S cluster assembly protein NifU [Methylocystis sp. ATCC 49242] Length = 323 Score = 64.8 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V+ I+E ++ +RP + +DGGD V +++ GAC GC +S T+ G+ L Sbjct: 249 VRLIEEAIEE-LRPYLQKDGGDCELIDVDGSNVLVTLSGACMGCQMSSVTV-SGIQERL 305 >gi|217032835|ref|ZP_03438315.1| hypothetical protein HPB128_176g13 [Helicobacter pylori B128] gi|298736836|ref|YP_003729366.1| hypothetical protein HPB8_1345 [Helicobacter pylori B8] gi|216945460|gb|EEC24122.1| hypothetical protein HPB128_176g13 [Helicobacter pylori B128] gi|298356030|emb|CBI66902.1| conserved hypothetical protein [Helicobacter pylori B8] Length = 326 Score = 64.8 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + + +G+ + +VQ+IK +V+D +R + DGGD+ ++ Sbjct: 224 EAEKLKVTANKSQNGELAFREMTMVQKIKAVDKVIDENIRAMLMMDGGDLEILDIKESDD 283 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GAC GC SA+ + + N L Sbjct: 284 YIDVYIRYMGACDGCMSATTGTLFAIENALQE 315 >gi|170741742|ref|YP_001770397.1| Fe-S cluster assembly protein NifU [Methylobacterium sp. 4-46] gi|168196016|gb|ACA17963.1| Fe-S cluster assembly protein NifU [Methylobacterium sp. 4-46] Length = 329 Score = 64.8 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++ I + ++ +RP + RDGGD +V + + GAC GC AS T+ GV L Sbjct: 259 IRLIDKAIE-ALRPVLQRDGGDCELVEVEGTVVSVRLSGACVGCQMASVTV-AGVQQRLI 316 Query: 178 HFV 180 + Sbjct: 317 EAL 319 >gi|314979457|gb|EFT23551.1| NifU-like domain protein [Propionibacterium acnes HL072PA2] Length = 180 Score = 64.8 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 41/199 (20%) Query: 3 IQTEDTPNPATLKFIP--------GQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASV 54 + E T +PATL+++ G +V G F N E + + +V Sbjct: 11 VHPETTTDPATLRWVVSGITLPFAGLLVSAPGLDEFLNQVRVEAT-----------VGAV 59 Query: 55 YFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESD 114 TV + WE + + D + + Sbjct: 60 M-----ATVL--EGTWERIGAGFRTALTTALERTDEWVGG-----------PDSKPLNDV 101 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGY----RDGIVFLSMRGACSGCPSASETLKY 170 + + E+ V A GG I + V ++M+GAC GCP+A TL Sbjct: 102 ETLRRCADELTGGPVGAVAAMHGGSIELVDVSVGDEERRVDVTMKGACRGCPAAIMTLHQ 161 Query: 171 GVANILNHFVPEVKDIRTV 189 + + L+ + E +R + Sbjct: 162 RLEHQLSLRLREPVTVREI 180 >gi|255020109|ref|ZP_05292180.1| hypothetical protein ACA_0450 [Acidithiobacillus caldus ATCC 51756] gi|254970471|gb|EET27962.1| hypothetical protein ACA_0450 [Acidithiobacillus caldus ATCC 51756] Length = 130 Score = 64.4 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 12/111 (10%) Query: 83 EHFISGDPIIHNGGLGDMKLDDMGSGDFIE-------SDSAVVQRIKEVLDNRVRPAVAR 135 + + DPI+ + G E D V V VR + R Sbjct: 21 DAIEAEDPILAAKIEHVQNMAKRQIGRKKEFSEHDPLPDPEAVAEAMAV----VRRILQR 76 Query: 136 DGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 DGGDI V + M+GAC+GCP+A L+ V I+ VP V + Sbjct: 77 DGGDIELVEIAQRDVRVRMKGACAGCPNAVLDLQQVVERIVG-AVPGVARV 126 >gi|317128638|ref|YP_004094920.1| Scaffold protein Nfu/NifU [Bacillus cellulosilyticus DSM 2522] gi|315473586|gb|ADU30189.1| Scaffold protein Nfu/NifU [Bacillus cellulosilyticus DSM 2522] Length = 372 Score = 64.4 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 3/80 (3%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISP-LASRIFSIPGIASVYFGYDFI 61 I E TP+P T+K Q L +G H + +E +P +F + G+ VY DFI Sbjct: 4 ISVEPTPSPNTMKLTLSQS-LPQGKAHNYTKETSEGAPSFVQDLFKVEGVKGVYHVADFI 62 Query: 62 TVGK-DQYDWEHLRPPVLGM 80 V + + DW+ + P V + Sbjct: 63 AVERHPKVDWKVILPEVRAV 82 >gi|119475888|ref|ZP_01616240.1| hypothetical protein GP2143_04845 [marine gamma proteobacterium HTCC2143] gi|119450515|gb|EAW31749.1| hypothetical protein GP2143_04845 [marine gamma proteobacterium HTCC2143] Length = 203 Score = 64.4 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYG 171 +DS + RI VL N V P++A GG++ + + L G C GC TLK G Sbjct: 114 ADSPLEDRINYVLYNEVNPSLASHGGEVSLLEVTEEKVAILQFGGGCQGCGMVEATLKDG 173 Query: 172 VANILNHFVPEVKDIRT 188 V L +PE+ +R Sbjct: 174 VEKSLMEQIPELTAVRD 190 >gi|156097428|ref|XP_001614747.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148803621|gb|EDL45020.1| hypothetical protein, conserved [Plasmodium vivax] Length = 265 Score = 64.0 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + +++VL N +RP + D GD+ ++ +++ + G C C S S T+ + Sbjct: 79 DLTPENVEKVL-NLIRPKLQIDNGDVELVDIKNNDLYIKLLGNCVTCSSNSVTVSQVIKK 137 Query: 175 ILNHFV 180 L ++ Sbjct: 138 TLKMYI 143 >gi|240168421|ref|ZP_04747080.1| NifU domain-containing protein [Mycobacterium kansasii ATCC 12478] Length = 189 Score = 64.0 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 16/127 (12%) Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 ITVG + W L + + + + +++ S + + + Sbjct: 58 ITVGATR-SWRELGDDIRTALTDALV---------DPAGWRVEQPTSSE-----AQLTTL 102 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 +E+L + GG I V + M GAC GC +A+ TL+ + L Sbjct: 103 AQELLAGPIGELAGSHGGSIELVSVVGLNVTVRMSGACRGCLAANSTLRDRLQRELRRRA 162 Query: 181 P-EVKDI 186 EV I Sbjct: 163 GIEVTVI 169 >gi|221054692|ref|XP_002258485.1| NifU-like protein [Plasmodium knowlesi strain H] gi|193808554|emb|CAQ39257.1| NifU-like protein, putative [Plasmodium knowlesi strain H] Length = 269 Score = 64.0 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + +++VL N +RP + D GD+ ++ +++ + G C C S S T+ + Sbjct: 83 DLTPENVEKVL-NLIRPKLQIDNGDVELVDIKNNDLYIKLLGNCVTCSSNSVTVSQVIKK 141 Query: 175 ILNHFV 180 L ++ Sbjct: 142 TLKMYI 147 >gi|154148924|ref|YP_001405665.1| nitrogen fixation protein NifU [Campylobacter hominis ATCC BAA-381] gi|153804933|gb|ABS51940.1| nitrogen fixation protein NifU [Campylobacter hominis ATCC BAA-381] Length = 330 Score = 64.0 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 5/65 (7%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGY---RDGI--VFLSMRGACSGCPSASETLKYGVA 173 + +++V+D +RP +A DGG++ DG +++ GACSGC S + Y + Sbjct: 255 KAVEDVIDKEIRPMLAFDGGNLDIVDIKNADDGKTDIYIRYLGACSGCSSGATGTLYAIE 314 Query: 174 NILNH 178 N+L Sbjct: 315 NVLQE 319 >gi|226946904|ref|YP_002801977.1| NifU C-terminal domain-containing protein AnfU [Azotobacter vinelandii DJ] gi|226721831|gb|ACO81002.1| NifU C-terminal domain-containing protein, AnfU [Azotobacter vinelandii DJ] Length = 96 Score = 64.0 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Query: 99 DMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGAC 158 + + D S ++ I E ++ R+RP + DGGD+ V L ++G C Sbjct: 2 NTQPDLERSAAKPLTEEQRSSIITETIE-RLRPGLQADGGDMEIVSIDGYKVRLRLKGMC 60 Query: 159 SGCPSASETLKYGVANILN 177 +GC ++ ETL G+ L Sbjct: 61 AGCTASGETL-GGIRRQLM 78 >gi|315930881|gb|EFV09868.1| nitrogen fixation protein nifU [Campylobacter jejuni subsp. jejuni 305] Length = 323 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 12/107 (11%) Query: 93 HNGGLGDMKLDDMGSGDFIESDSAVVQR---IKEVLDNRVRPAVARDGGDIVFKGYRDG- 148 + KL + D + VV + ++ VLD +RP + DGGD+ + Sbjct: 219 TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQKAE 278 Query: 149 ----IVFLSMRGACSGCPS-ASETLKYGVANILNHFV-PEVKDIRTV 189 V++ GACSGC S + TL Y + IL + P ++ + V Sbjct: 279 GAAIDVYIRYLGACSGCSSGSGATL-YAIETILQEELSPNIR-VMPV 323 >gi|86153596|ref|ZP_01071799.1| NifU family protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842557|gb|EAQ59769.1| NifU family protein [Campylobacter jejuni subsp. jejuni HB93-13] Length = 323 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 12/107 (11%) Query: 93 HNGGLGDMKLDDMGSGDFIESDSAVVQR---IKEVLDNRVRPAVARDGGDIVFKGYRDG- 148 + KL + D + VV + ++ VLD +RP + DGGD+ + Sbjct: 219 TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQKAE 278 Query: 149 ----IVFLSMRGACSGCPS-ASETLKYGVANILNHFV-PEVKDIRTV 189 V++ GACSGC S + TL Y + IL + P ++ + V Sbjct: 279 GAAIDVYIRYLGACSGCSSGSGATL-YAIETILQEELSPNIR-VMPV 323 >gi|86151274|ref|ZP_01069489.1| NifU family protein [Campylobacter jejuni subsp. jejuni 260.94] gi|315123826|ref|YP_004065830.1| NifU family protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841621|gb|EAQ58868.1| NifU family protein [Campylobacter jejuni subsp. jejuni 260.94] gi|315017548|gb|ADT65641.1| NifU family protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 323 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 12/107 (11%) Query: 93 HNGGLGDMKLDDMGSGDFIESDSAVVQR---IKEVLDNRVRPAVARDGGDIVFKGYRDG- 148 + KL + D + VV + ++ VLD +RP + DGGD+ + Sbjct: 219 TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQKAE 278 Query: 149 ----IVFLSMRGACSGCPS-ASETLKYGVANILNHFV-PEVKDIRTV 189 V++ GACSGC S + TL Y + IL + P ++ + V Sbjct: 279 GAAIDVYIRYLGACSGCSSGSGATL-YAIETILQEELSPNIR-VMPV 323 >gi|169831222|ref|YP_001717204.1| NifU domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169638066|gb|ACA59572.1| nitrogen-fixing NifU domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 43 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 32/44 (72%), Gaps = 1/44 (2%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSG 160 + ++++EVL N+VRP + RDGGD+ +DG+V + ++GAC G Sbjct: 1 MREKVEEVL-NKVRPYLQRDGGDVELVDVKDGVVHVRLKGACRG 43 >gi|26553528|ref|NP_757462.1| nitrogen fixation protein [Mycoplasma penetrans HF-2] gi|26453534|dbj|BAC43866.1| nitrogen fixation protein [Mycoplasma penetrans HF-2] Length = 83 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGVAN 174 ++ IK+V+D+ +R + +DGGD+ F Y G V + + G C GC T K G+ Sbjct: 9 IIDEIKDVIDS-IRFYINQDGGDLEFVDYNPEKGEVTIKILGECIGCSLIDVTYKEGLET 67 Query: 175 ILNHFVPEVKDI 186 IL + V VK + Sbjct: 68 ILKNEVEGVKSV 79 >gi|57237299|ref|YP_178312.1| NifU family protein [Campylobacter jejuni RM1221] gi|88597232|ref|ZP_01100467.1| NifU family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|121613377|ref|YP_999952.1| NifU family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|157414537|ref|YP_001481793.1| NifU family protein [Campylobacter jejuni subsp. jejuni 81116] gi|167004909|ref|ZP_02270667.1| nifU-like protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205356531|ref|ZP_03223294.1| NifU protein [Campylobacter jejuni subsp. jejuni CG8421] gi|218561903|ref|YP_002343682.1| NifU protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|57166103|gb|AAW34882.1| NifU family protein [Campylobacter jejuni RM1221] gi|87250262|gb|EAQ73220.1| NifU family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|88190293|gb|EAQ94267.1| NifU family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112359609|emb|CAL34394.1| NifU protein homolog [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|157385501|gb|ABV51816.1| nifU-like protein [Campylobacter jejuni subsp. jejuni 81116] gi|205345536|gb|EDZ32176.1| NifU protein [Campylobacter jejuni subsp. jejuni CG8421] gi|284925515|gb|ADC27867.1| NifU family protein [Campylobacter jejuni subsp. jejuni IA3902] gi|307747179|gb|ADN90449.1| NifU family protein [Campylobacter jejuni subsp. jejuni M1] gi|315928167|gb|EFV07485.1| nitrogen fixation protein nifU [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315932037|gb|EFV10990.1| Nitrogen fixation protein NifU [Campylobacter jejuni subsp. jejuni 327] Length = 323 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 12/107 (11%) Query: 93 HNGGLGDMKLDDMGSGDFIESDSAVVQR---IKEVLDNRVRPAVARDGGDIVFKGYRDG- 148 + KL + D + VV + ++ VLD +RP + DGGD+ + Sbjct: 219 TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQKAE 278 Query: 149 ----IVFLSMRGACSGCPS-ASETLKYGVANILNHFV-PEVKDIRTV 189 V++ GACSGC S + TL Y + IL + P ++ + V Sbjct: 279 GAAIDVYIRYLGACSGCSSGSGATL-YAIETILQEELSPNIR-VMPV 323 >gi|76801126|ref|YP_326134.1| NifU domain-containing protein [Natronomonas pharaonis DSM 2160] gi|76556991|emb|CAI48565.1| nifU protein C-terminal domain homolog [Natronomonas pharaonis DSM 2160] Length = 121 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 4/82 (4%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSA 164 S + + D + +RI L P + GG + +G V + + GACSGC + Sbjct: 2 STETADGDEELRERISNFLRRNF-PQIQMHGGSAAIQDLDRENGEVTIMLGGACSGCGIS 60 Query: 165 SETLKYGVANILNHFVPEVKDI 186 T+ + + + +PE+ + Sbjct: 61 PMTI-QAIKSRMTEEIPEIDTV 81 >gi|283955663|ref|ZP_06373156.1| nifU-like protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792888|gb|EFC31664.1| nifU-like protein [Campylobacter jejuni subsp. jejuni 1336] Length = 323 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 12/107 (11%) Query: 93 HNGGLGDMKLDDMGSGDFIESDSAVVQR---IKEVLDNRVRPAVARDGGDIVFKGYRDG- 148 + KL + D + VV + ++ VLD +RP + DGGD+ + Sbjct: 219 TRAEMDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQKAE 278 Query: 149 ----IVFLSMRGACSGCPS-ASETLKYGVANILNHFV-PEVKDIRTV 189 V++ GACSGC S + TL Y + IL + P ++ + V Sbjct: 279 GAAIDVYIRYLGACSGCSSGSGATL-YAIETILQEELSPNIR-VMPV 323 >gi|224372844|ref|YP_002607216.1| NifU family protein [Nautilia profundicola AmH] gi|223588388|gb|ACM92124.1| NifU family protein [Nautilia profundicola AmH] Length = 321 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAV--VQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGI 149 + L + + E S + ++ I+E LD +++P +A DGG + DGI Sbjct: 220 QEQMKKENLKNATETEDFEKMSLIKKIKAIEEFLDTKIKPMLAMDGGSLELLDIREEDGI 279 Query: 150 --VFLSMRGACSGCPSASETLKYGVANILNHF 179 V++ GAC+ C S TL + + + Sbjct: 280 TKVYIRYMGACATCASGGVTLL-AIEDEMKKH 310 >gi|57168365|ref|ZP_00367499.1| nifU protein homolog Cj0239c [Campylobacter coli RM2228] gi|305432781|ref|ZP_07401940.1| NifU family protein [Campylobacter coli JV20] gi|57020173|gb|EAL56847.1| nifU protein homolog Cj0239c [Campylobacter coli RM2228] gi|304444178|gb|EFM36832.1| NifU family protein [Campylobacter coli JV20] Length = 323 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 12/107 (11%) Query: 93 HNGGLGDMKLDDMGSGDFIESDSAVVQR---IKEVLDNRVRPAVARDGGDIVFKGYRDG- 148 + KL + D + VV + ++ VLD +RP + DGGD+ + Sbjct: 219 TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQKAE 278 Query: 149 ----IVFLSMRGACSGCPS-ASETLKYGVANILNHFV-PEVKDIRTV 189 V++ GACSGC S + TL Y + IL + P ++ + V Sbjct: 279 GAAIDVYIRYLGACSGCSSGSGATL-YAIETILQEELSPNIR-VMPV 323 >gi|153951672|ref|YP_001397468.1| NifU family protein [Campylobacter jejuni subsp. doylei 269.97] gi|152939118|gb|ABS43859.1| NifU family protein [Campylobacter jejuni subsp. doylei 269.97] Length = 323 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 10/97 (10%) Query: 93 HNGGLGDMKLDDMGSGDFIESDSAVVQR---IKEVLDNRVRPAVARDGGDIVFKGYRDG- 148 + KL + D + VV + ++ VLD +RP + DGGD+ + Sbjct: 219 TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQKAE 278 Query: 149 ----IVFLSMRGACSGCPS-ASETLKYGVANILNHFV 180 V++ GACSGC S + TL Y + IL + Sbjct: 279 GAAIDVYIRYLGACSGCSSGSGATL-YAIETILQEEL 314 >gi|57505685|ref|ZP_00371611.1| nifU protein homolog Cj0239c [Campylobacter upsaliensis RM3195] gi|57015958|gb|EAL52746.1| nifU protein homolog Cj0239c [Campylobacter upsaliensis RM3195] Length = 323 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 10/106 (9%) Query: 93 HNGGLGDMKLDDMGSGDFIESDSAVVQR---IKEVLDNRVRPAVARDGGDIVFKGY---R 146 + KL + D + +V + ++ VLD +RP + DGGD+ Sbjct: 219 TRAEMDREKLKNAMKSDVAFDEMTMVGQLKAVEAVLDAEIRPMLQGDGGDMEVIDLQKAE 278 Query: 147 DG--IVFLSMRGACSGCPSASETLKYGVANILNHFV-PEVKDIRTV 189 G +++ GAC GC S + Y + +IL + P ++ + V Sbjct: 279 GGAIDIYIRYLGACGGCSSGTGATLYAIESILQEELSPNIR-VMPV 323 >gi|315057669|gb|ADT71998.1| Iron-sulfur cluster assembly scaffold protein NifU [Campylobacter jejuni subsp. jejuni S3] Length = 323 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 12/107 (11%) Query: 93 HNGGLGDMKLDDMGSGDFIESDSAVVQR---IKEVLDNRVRPAVARDGGDIVFKGYR--D 147 + KL + D + VV + ++ VLD +RP + DGGD+ + + Sbjct: 219 TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQKTE 278 Query: 148 G---IVFLSMRGACSGCPS-ASETLKYGVANILNHFV-PEVKDIRTV 189 G V++ GACSGC S + TL Y + IL + P ++ + V Sbjct: 279 GAAIDVYIRYLGACSGCSSGSGATL-YAIETILQEELSPNIR-VMPV 323 >gi|315928505|gb|EFV07809.1| nitrogen fixation protein nifU [Campylobacter jejuni subsp. jejuni 305] Length = 286 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 10/97 (10%) Query: 93 HNGGLGDMKLDDMGSGDFIESDSAVVQR---IKEVLDNRVRPAVARDGGDIVFKGYRDG- 148 + KL + D + VV + ++ VLD +RP + DGGD+ + Sbjct: 182 TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQKAE 241 Query: 149 ----IVFLSMRGACSGCPS-ASETLKYGVANILNHFV 180 V++ GACSGC S + TL Y + IL + Sbjct: 242 GAAIDVYIRYLGACSGCSSGSGATL-YAIETILQEEL 277 >gi|317053470|ref|YP_004119237.1| Fe-S cluster assembly protein NifU [Pantoea sp. At-9b] gi|255761147|gb|ACU32746.1| Fe-S cluster assembly protein [Pantoea sp. At-9b] gi|316953209|gb|ADU72681.1| Fe-S cluster assembly protein NifU [Pantoea sp. At-9b] Length = 274 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 2/98 (2%) Query: 92 IHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVF 151 I + + + Q + E + +RP + DGGD+ + V Sbjct: 179 IELALAAILASAPEMTAPVSPAKDPHWQDVMETI-TELRPHIQADGGDMSLVNVANHTVT 237 Query: 152 LSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 +S+ G+CSGC TL + L ++ V Sbjct: 238 VSLTGSCSGCMMTDMTL-AWLQQKLMERTGCYMEVVAV 274 >gi|257460305|ref|ZP_05625408.1| nitrogen fixation protein NifU [Campylobacter gracilis RM3268] gi|257442370|gb|EEV17510.1| nitrogen fixation protein NifU [Campylobacter gracilis RM3268] Length = 333 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 8/100 (8%) Query: 93 HNGGLGDMKLDDMGSGDFIESDSAV--VQRIKEVLDNRVRPAVARDGGDIVFKGY---RD 147 G+ E + + + ++ VLD +RP + DGG++ D Sbjct: 230 AQAEASAATSAKAGAEMSFEQLNLIGKFKAVEGVLDEDIRPMLQMDGGNLDVIDIRPADD 289 Query: 148 GI--VFLSMRGACSGCPSASETLKYGVANILNHFV-PEVK 184 G +++ GACSGC S + Y + N+L + P ++ Sbjct: 290 GKTDIYIRYLGACSGCASGASGTLYAIENVLQENLSPNIR 329 >gi|78778201|ref|YP_394516.1| nitrogen-fixing NifU-like-like [Sulfurimonas denitrificans DSM 1251] gi|78498741|gb|ABB45281.1| Nitrogen-fixing NifU-like protein-like protein [Sulfurimonas denitrificans DSM 1251] Length = 324 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 5/92 (5%) Query: 94 NGGLGDMKLDDMGSGDFIE-SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI--- 149 + D GSG F + ++ I V+D VR + DGG++ + Sbjct: 224 DEEKMKAAADAGGSGSFEAMTLVQKIKAIDAVVDENVRQFLIMDGGNMEVIDVKTSDEYI 283 Query: 150 -VFLSMRGACSGCPSASETLKYGVANILNHFV 180 V++ GAC+GC S++ Y + L + Sbjct: 284 DVYIRYLGACNGCASSATGTLYAIEATLKEKL 315 >gi|229916484|ref|YP_002885130.1| Scaffold protein Nfu/NifU [Exiguobacterium sp. AT1b] gi|229467913|gb|ACQ69685.1| Scaffold protein Nfu/NifU [Exiguobacterium sp. AT1b] Length = 82 Score = 63.3 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 2 FIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 ++ + TPNP +K + V + A EA PL +++ I G+ SV+ DF+ Sbjct: 1 MLRIDPTPNPNAMKVTLPENVFGAKSQSVK-AGEATDQPLLAKLVEIEGVESVFAYGDFV 59 Query: 62 TVGKDQ-YDWEHLRPPVLGMIM 82 TV K+ WE + P V Sbjct: 60 TVSKENGVSWEAILPHVETAYR 81 >gi|148926387|ref|ZP_01810071.1| nifU protein like protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145844779|gb|EDK21884.1| nifU protein like protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 317 Score = 63.3 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 10/97 (10%) Query: 93 HNGGLGDMKLDDMGSGDFIESDSAVVQR---IKEVLDNRVRPAVARDGGDIVFKGYRDG- 148 + KL + D + VV + ++ VLD +RP + DGGD+ + Sbjct: 213 TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQKAE 272 Query: 149 ----IVFLSMRGACSGCPS-ASETLKYGVANILNHFV 180 V++ GACSGC S + TL Y + IL + Sbjct: 273 GAAIDVYIRYLGACSGCSSGSGATL-YAIETILQEEL 308 >gi|283955341|ref|ZP_06372840.1| nifU-like protein [Campylobacter jejuni subsp. jejuni 414] gi|283793101|gb|EFC31871.1| nifU-like protein [Campylobacter jejuni subsp. jejuni 414] Length = 323 Score = 63.3 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 9/79 (11%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPS-ASETLKYG 171 ++ ++ VLD +RP + DGGD+ + V++ GACSGC S + TL Y Sbjct: 247 LKAVESVLDAEIRPMLHNDGGDLEVIDIQKAESAAIDVYIRYLGACSGCSSGSGATL-YA 305 Query: 172 VANILNHFV-PEVKDIRTV 189 + IL + P ++ + V Sbjct: 306 IETILQEELSPNIR-VMPV 323 >gi|86149607|ref|ZP_01067837.1| NifU family protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839875|gb|EAQ57134.1| NifU family protein [Campylobacter jejuni subsp. jejuni CF93-6] Length = 323 Score = 63.3 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 9/79 (11%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPS-ASETLKYG 171 ++ ++ VLD +RP + DGGD+ + V++ GACSGC S + TL Y Sbjct: 247 LKAVESVLDAEIRPMLHNDGGDLEVIDIQKAEGAAIDVYIRYLGACSGCSSGSGATL-YA 305 Query: 172 VANILNHFV-PEVKDIRTV 189 + IL + P ++ + V Sbjct: 306 IETILQEELSPNIR-VMPV 323 >gi|222478586|ref|YP_002564823.1| nitrogen-fixing NifU domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222451488|gb|ACM55753.1| nitrogen-fixing NifU domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 125 Score = 63.3 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGD--IVFKGYRDGIVFLSMRGACSGCPSA 164 S D ++D+ + +RI L P + GG I G V + + GACSGC + Sbjct: 2 STDTTDADNDLRERITNFLRRNF-PQIQMHGGSAAISHLDRESGEVTVQLGGACSGCGIS 60 Query: 165 SETLKYGVANILNHFVPEVKDI 186 T+ + + + +PE++ + Sbjct: 61 PMTI-QAIKSRMVKEIPEIETV 81 >gi|325280703|ref|YP_004253245.1| nitrogen-fixing NifU domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324312512|gb|ADY33065.1| nitrogen-fixing NifU domain-containing protein [Odoribacter splanchnicus DSM 20712] Length = 103 Score = 63.3 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 37/69 (53%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171 ES S+ +R++E++ RVRP + GGD+ + R V + GAC CP+A T++ Sbjct: 6 ESSSSFEERVREIVLYRVRPHLLEHGGDLSVREIRGRDVGIVFSGACGACPAAQITVEQV 65 Query: 172 VANILNHFV 180 V L + Sbjct: 66 VEKGLRREL 74 >gi|182677480|ref|YP_001831626.1| NifU domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182633363|gb|ACB94137.1| nitrogen-fixing NifU domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 106 Score = 63.3 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 4/100 (4%) Query: 92 IHNGGLGDMKLDDMGSGDFIESDSAVVQR--IKEVLDNRVRPAVARDGGDIVFKGYRDGI 149 ++ K + G+ + + A +R I E +++ +RP + RD GD + Sbjct: 2 LNPAEKIVEKAPEEGAAEVVSDAVAAARRQLIAETIES-IRPNLQRDKGDCELIDVQGDK 60 Query: 150 VFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 VF+ M GAC GC +S TL GV L + + V Sbjct: 61 VFVKMTGACVGCQLSSMTL-NGVQAKLVEATGRMIRVIPV 99 >gi|163783768|ref|ZP_02178753.1| hypothetical protein HG1285_09916 [Hydrogenivirga sp. 128-5-R1-1] gi|159880957|gb|EDP74476.1| hypothetical protein HG1285_09916 [Hydrogenivirga sp. 128-5-R1-1] Length = 83 Score = 63.3 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +++VL+ ++RPA+ G + DG+V+L G CS CP +LK V L Sbjct: 7 DEVEKVLE-KIRPALKDHQGSLKIVNIEDGVVYLQFVGGCSDCPVVDVSLKNVVDIALKG 65 Query: 179 FVPEVKDIR 187 + V+ + Sbjct: 66 NLNWVRKVE 74 >gi|255025885|ref|ZP_05297871.1| NifU family protein [Listeria monocytogenes FSL J2-003] Length = 41 Score = 63.3 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 21/40 (52%) Query: 150 VFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 V + + GAC CPS+ TLK G+ L + K++ V Sbjct: 1 VKIKLLGACETCPSSDMTLKMGIELTLAEKIIGFKEVVQV 40 >gi|257453153|ref|ZP_05618452.1| hypothetical protein F3_08841 [Fusobacterium sp. 3_1_5R] gi|317059688|ref|ZP_07924173.1| predicted protein [Fusobacterium sp. 3_1_5R] gi|313685364|gb|EFS22199.1| predicted protein [Fusobacterium sp. 3_1_5R] Length = 102 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI--VFLSMRGACSGCPSASETLKYGVANI 175 ++ I E++ ++P++ GG + Y + + L + G C CP + +T++ + Sbjct: 1 MEEILELIGKEIQPSLQEHGGSLEIVLYEEEKQELQLRLMGQCCSCPHSIDTVENFIKVK 60 Query: 176 LNHFVPEVKDI 186 L P++K I Sbjct: 61 LKEKFPKLKKI 71 >gi|297171090|gb|ADI22102.1| thioredoxin-like proteins and domains [uncultured Planctomycetales bacterium HF0200_11L05] Length = 195 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKY 170 + D+++ +R+ +L + + P++A GG++ L G C GC TLK Sbjct: 105 DEDASLEERVNYLLYSEINPSLAAHGGEVSLVEILNKETAVLQFGGGCQGCGMVDVTLKD 164 Query: 171 GVANILNHFVPEVKDIRTV 189 G+ L +PE+K I V Sbjct: 165 GIEKTLIEEIPELKGIADV 183 >gi|70726477|ref|YP_253391.1| hypothetical protein SH1476 [Staphylococcus haemolyticus JCSC1435] gi|68447201|dbj|BAE04785.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 83 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 3/82 (3%) Query: 1 MFI-QTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 M I E+TPN T+K + + F++A+E + +++F I G+ S+++ D Sbjct: 1 MQIVSIEETPNHKTMKINLSEKREDNKSNTFTSAQEGQPD-FINKLFDIDGVKSIFYVMD 59 Query: 60 FITVGK-DQYDWEHLRPPVLGM 80 FI+V K D DW ++ P + Sbjct: 60 FISVDKEDNADWNNILPQIQST 81 >gi|229496013|ref|ZP_04389737.1| NifU-related protein [Porphyromonas endodontalis ATCC 35406] gi|229317105|gb|EEN83014.1| NifU-related protein [Porphyromonas endodontalis ATCC 35406] Length = 104 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILN 177 ++EVL+ RV P +A GG + +G + ++ +GAC+ CPS +ET+ V L Sbjct: 6 DAVQEVLETRVAPQLALHGGGVKLCSISPEGDIRVAFKGACATCPSMTETMDALVMGQLR 65 Query: 178 HFVPE 182 P+ Sbjct: 66 AAFPD 70 >gi|313124942|ref|YP_004035206.1| thioredoxin-like protein [Halogeometricum borinquense DSM 11551] gi|312291307|gb|ADQ65767.1| thioredoxin-like protein [Halogeometricum borinquense DSM 11551] Length = 119 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 4/82 (4%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGD--IVFKGYRDGIVFLSMRGACSGCPSA 164 S D +D + +R+ L P + GG I +G V + + GACSGC + Sbjct: 2 STDASNTDDDLKERVTNFLRRNF-PQIQMHGGSAAIQHLDREEGEVTIMLGGACSGCGIS 60 Query: 165 SETLKYGVANILNHFVPEVKDI 186 T+ + + + +PE++ + Sbjct: 61 PMTI-QAIKSRMVKEIPEIEKV 81 >gi|148645200|gb|ABR01124.1| NifU [uncultured Geobacter sp.] Length = 44 Score = 62.5 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 138 GDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 GD+ DG+V + + GAC CP + LK G+ L V Sbjct: 1 GDVELVEVTADGVVKVKLVGACGHCPMSXXXLKMGIEKTLXEKV 44 >gi|207109796|ref|ZP_03243958.1| nifU-like protein [Helicobacter pylori HPKX_438_CA4C1] Length = 97 Score = 62.5 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 7/89 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDGI- 149 + +G+ + +VQ+IK +V+D +RP + DGGD+ ++ Sbjct: 9 EAEKLKATANKSQNGELAFREMTMVQKIKAVDKVIDENIRPMLMMDGGDLEILDIKESDD 68 Query: 150 ---VFLSMRGACSGCPSASETLKYGVANI 175 V++ GAC GC SA+ + + N Sbjct: 69 YIDVYIRYMGACDGCMSATTGTLFAIENT 97 >gi|195952780|ref|YP_002121070.1| nitrogen-fixing NifU domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932392|gb|ACG57092.1| nitrogen-fixing NifU domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 83 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 +Q ++ +L +RPA+ G++ +D +V+L G CS CP ++K + Sbjct: 2 EDKLQEVERILQ-MIRPALDTHHGNLKLVDVKDNVVYLQFEGGCSDCPVVDMSVKNVIDT 60 Query: 175 ILNHFVPEVKDIR 187 + + VK + Sbjct: 61 SIKGNLRWVKKVE 73 >gi|269302647|gb|ACZ32747.1| NifU family protein [Chlamydophila pneumoniae LPCoLN] Length = 266 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV- 180 + + ++ P +A DGG++ + + IV ++ G CSGCPS+ + + +L ++ Sbjct: 190 RATIAEKIGPYIAMDGGEVTVESLENFIVTIAYSGNCSGCPSSLGSTLNSIGQLLRAYIY 249 Query: 181 PEVK 184 PE++ Sbjct: 250 PELQ 253 >gi|33242221|ref|NP_877162.1| NifU-like protein [Chlamydophila pneumoniae TW-183] gi|33236732|gb|AAP98819.1| NifU-like protein [Chlamydophila pneumoniae TW-183] Length = 266 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV- 180 + + ++ P +A DGG++ + + IV ++ G CSGCPS+ + + +L ++ Sbjct: 190 RATIAEKIGPYIAMDGGEVTVESLENFIVTIAYSGNCSGCPSSLGSTLNSIGQLLRAYIY 249 Query: 181 PEVK 184 PE++ Sbjct: 250 PELQ 253 >gi|27468042|ref|NP_764679.1| hypothetical protein SE1124 [Staphylococcus epidermidis ATCC 12228] gi|57866930|ref|YP_188584.1| hypothetical protein SERP1007 [Staphylococcus epidermidis RP62A] gi|242242718|ref|ZP_04797163.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] gi|251810865|ref|ZP_04825338.1| conserved hypothetical protein [Staphylococcus epidermidis BCM-HMP0060] gi|282876129|ref|ZP_06284996.1| scaffold protein Nfu/NifU N-terminal domain protein [Staphylococcus epidermidis SK135] gi|293366594|ref|ZP_06613271.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|27315587|gb|AAO04721.1|AE016747_218 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57637588|gb|AAW54376.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A] gi|242233854|gb|EES36166.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] gi|251805545|gb|EES58202.1| conserved hypothetical protein [Staphylococcus epidermidis BCM-HMP0060] gi|281295154|gb|EFA87681.1| scaffold protein Nfu/NifU N-terminal domain protein [Staphylococcus epidermidis SK135] gi|291319363|gb|EFE59732.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|319400790|gb|EFV89009.1| scaffold Nfu/NifU family protein [Staphylococcus epidermidis FRI909] gi|329731570|gb|EGG67932.1| scaffold protein Nfu/NifU N-terminal domain protein [Staphylococcus epidermidis VCU144] gi|329735279|gb|EGG71571.1| scaffold protein Nfu/NifU N-terminal domain protein [Staphylococcus epidermidis VCU045] gi|329737394|gb|EGG73648.1| scaffold protein Nfu/NifU N-terminal domain protein [Staphylococcus epidermidis VCU028] Length = 86 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I +TPN T+K + + ++ A+E + +R+F I G+ S+++ DFI+ Sbjct: 4 IAISETPNHNTMKVSLSEPRQDNSSTTYTAAQEGQ-PEFINRLFEIEGVKSIFYVLDFIS 62 Query: 63 VGK-DQYDWEHLRPPV 77 + K D +W L P + Sbjct: 63 IDKEDNANWNELLPQI 78 >gi|16752178|ref|NP_445545.1| nifU protein, putative [Chlamydophila pneumoniae AR39] gi|7189922|gb|AAF38786.1| nifU protein, putative [Chlamydophila pneumoniae AR39] Length = 266 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV- 180 + + ++ P +A DGG++ + + IV ++ G CSGCPS+ + + +L ++ Sbjct: 190 RATIAEKIGPYIAMDGGEVTVESLENFIVTIAYSGNCSGCPSSLGSTLNSIGQLLRAYIY 249 Query: 181 PEVK 184 PE++ Sbjct: 250 PELQ 253 >gi|15618770|ref|NP_225056.1| NifU-related protein [Chlamydophila pneumoniae CWL029] gi|15836394|ref|NP_300918.1| NifU-related protein [Chlamydophila pneumoniae J138] gi|4377178|gb|AAD18999.1| NifU-related protein [Chlamydophila pneumoniae CWL029] gi|8979235|dbj|BAA99069.1| NifU-related protein [Chlamydophila pneumoniae J138] Length = 266 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV- 180 + + ++ P +A DGG++ + + IV ++ G CSGCPS+ + + +L ++ Sbjct: 190 RATIAEKIGPYIAMDGGEVTVESLENFIVTIAYSGNCSGCPSSLGSTLNSIGQLLRAYIY 249 Query: 181 PEVK 184 PE++ Sbjct: 250 PELQ 253 >gi|55379654|ref|YP_137504.1| hypothetical protein rrnAC3083 [Haloarcula marismortui ATCC 43049] gi|55232379|gb|AAV47798.1| unknown [Haloarcula marismortui ATCC 43049] Length = 140 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 4/77 (5%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLK 169 E + + +RI L P + GG + +G V + + GACSGC + T+ Sbjct: 22 EDANDLRERITNFLRRNF-PQIQMHGGSAAIEEIDREEGSVTIRLGGACSGCGISPMTI- 79 Query: 170 YGVANILNHFVPEVKDI 186 + + +PE+ ++ Sbjct: 80 QAIKTRMTKEIPEINEV 96 >gi|319955766|ref|YP_004167029.1| bfd domain protein (2fe-2S)-binding domain protein [Nitratifractor salsuginis DSM 16511] gi|319418170|gb|ADV45280.1| BFD domain protein (2Fe-2S)-binding domain protein [Nitratifractor salsuginis DSM 16511] Length = 320 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 5/75 (6%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG----IVFLSMRGACSGCPSASETLKY 170 I V+D +R + DGGD+ ++ +++ GACSGC SAS + Sbjct: 242 EEKKAAINAVIDEHIRAMLVMDGGDMEILDVKENGEHTDLYIRYLGACSGCASASTGTLF 301 Query: 171 GVANILNHFV-PEVK 184 + IL + P ++ Sbjct: 302 AIEGILKQKLDPNIR 316 >gi|332558975|ref|ZP_08413297.1| nitrogen fixation protein [Rhodobacter sphaeroides WS8N] gi|332276687|gb|EGJ22002.1| nitrogen fixation protein [Rhodobacter sphaeroides WS8N] Length = 246 Score = 62.1 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + + I EV+++ VRP + DGGD+ V + + GACSGC A+ TL G+ Sbjct: 162 AEEARLIAEVIES-VRPRLRADGGDVTLVAVEGSKVRVHLTGACSGCQLAALTL-GGLQK 219 Query: 175 IL 176 L Sbjct: 220 RL 221 >gi|221639965|ref|YP_002526227.1| nitrogen fixation protein nifU [Rhodobacter sphaeroides KD131] gi|221160746|gb|ACM01726.1| Nitrogen fixation protein nifU [Rhodobacter sphaeroides KD131] Length = 246 Score = 62.1 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + + I EV+++ VRP + DGGD+ V + + GACSGC A+ TL G+ Sbjct: 162 AEEARLIAEVIES-VRPRLRADGGDVTLVAVEGSKVRVHLTGACSGCQLAALTL-GGLQK 219 Query: 175 IL 176 L Sbjct: 220 RL 221 >gi|77464100|ref|YP_353604.1| nitrogen fixation protein [Rhodobacter sphaeroides 2.4.1] gi|266628|sp|Q01180|NIFU_RHOSH RecName: Full=Nitrogen fixation protein nifU gi|151967|gb|AAA26136.1| nifU [Rhodobacter sphaeroides] gi|77388518|gb|ABA79703.1| Nitrogen fixation protein [Rhodobacter sphaeroides 2.4.1] Length = 246 Score = 62.1 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + + I EV+++ VRP + DGGD+ V + + GACSGC A+ TL G+ Sbjct: 162 AEEARLIAEVIES-VRPRLRADGGDVTLVAVEGSKVRVHLTGACSGCQLAALTL-GGLQK 219 Query: 175 IL 176 L Sbjct: 220 RL 221 >gi|126462944|ref|YP_001044058.1| NifU domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126104608|gb|ABN77286.1| nitrogen-fixing NifU domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 246 Score = 62.1 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 + + I EV+++ VRP + DGGD+ V + + GACSGC A+ TL G+ Sbjct: 162 AEEARLIAEVIES-VRPRLRADGGDVTLVAVEGSKVRVHLTGACSGCQLAALTL-GGLQK 219 Query: 175 IL 176 L Sbjct: 220 RL 221 >gi|239636889|ref|ZP_04677888.1| conserved virulence factor C [Staphylococcus warneri L37603] gi|239597563|gb|EEQ80061.1| conserved virulence factor C [Staphylococcus warneri L37603] Length = 84 Score = 62.1 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Query: 7 DTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK- 65 +TPN T+K + + +++A+E + + +F I G+ S+++ DFI+V K Sbjct: 8 ETPNHNTMKITLNETREDMKSNTYTSAEEGQ-PEFINALFDIEGVKSIFYVMDFISVDKE 66 Query: 66 DQYDWEHLRPPV 77 D+ DW+ L P + Sbjct: 67 DEADWQTLIPQI 78 >gi|284929173|ref|YP_003421695.1| Fe-S cluster assembly protein NifU [cyanobacterium UCYN-A] gi|213578831|gb|ACJ53725.1| Fe-S cluster assembly protein NifU [cyanobacterium UCYN-A] Length = 294 Score = 61.7 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 52/114 (45%), Gaps = 3/114 (2%) Query: 76 PVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVAR 135 + +I++ G + + + ++ + I++VL+ V+PA+A+ Sbjct: 184 DIDDIIVDVAEEGFTLTEDLSSEANIPELEVKTL---TNLQKITLIQQVLEEEVKPALAK 240 Query: 136 DGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 DGGD+ ++ + ++GACS C S++ TLK + L + + + V Sbjct: 241 DGGDVELFDIEGNLIKVVLKGACSSCSSSTFTLKTAIEARLRERISKDLTVIAV 294 >gi|223040071|ref|ZP_03610352.1| NifU family protein [Campylobacter rectus RM3267] gi|222878657|gb|EEF13757.1| NifU family protein [Campylobacter rectus RM3267] Length = 330 Score = 61.7 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETLKYGV 172 ++ I+ V+D ++RP + DGG++ + V++ GACSGC S + Y + Sbjct: 254 LKAIESVIDEQIRPMLMMDGGNMEILDLQKDAEGKFDVYIRYMGACSGCASGATGTLYAI 313 Query: 173 ANILNH 178 N+L Sbjct: 314 ENVLQE 319 >gi|256844964|ref|ZP_05550422.1| predicted protein [Fusobacterium sp. 3_1_36A2] gi|256718523|gb|EEU32078.1| predicted protein [Fusobacterium sp. 3_1_36A2] Length = 101 Score = 61.7 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFK--GYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 + +I++ LD +RP + GG+I + L ++G C CP + ET + + Sbjct: 1 MDKIEKFLDREIRPYLKSHGGNIEIINYSIERQELNLRLKGQCCVCPHSMETNENFIKKS 60 Query: 176 LNHFVPEVKDI 186 + P++K+I Sbjct: 61 ILEKFPKIKNI 71 >gi|34763076|ref|ZP_00144048.1| NifU-like protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887244|gb|EAA24343.1| NifU-like protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 105 Score = 61.7 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFK--GYRDGIVFLSMRGACSGCPSASETLKYGVA 173 + +I++ LD +RP + GGDI + L ++G C CP + ET + + Sbjct: 3 ENMDKIEKFLDKEIRPYLKSHGGDIEIINYSIEKKELNLRLKGQCCVCPHSIETNENFIK 62 Query: 174 NILNHFVPEVKDI 186 + E+K+I Sbjct: 63 KSIVEKFSEIKNI 75 >gi|237741635|ref|ZP_04572116.1| predicted protein [Fusobacterium sp. 4_1_13] gi|294785755|ref|ZP_06751043.1| nitrogen fixation protein NifU [Fusobacterium sp. 3_1_27] gi|229429283|gb|EEO39495.1| predicted protein [Fusobacterium sp. 4_1_13] gi|294487469|gb|EFG34831.1| nitrogen fixation protein NifU [Fusobacterium sp. 3_1_27] Length = 105 Score = 61.3 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFK--GYRDGIVFLSMRGACSGCPSASETLKYGVA 173 + +I++ LD +RP + GGDI + L ++G C CP + ET + + Sbjct: 3 ENMDKIEKFLDKEIRPYLKSHGGDIEIINYSIEKQELNLRLKGQCCVCPHSIETNENFIK 62 Query: 174 NILNHFVPEVKDI 186 + E+K+I Sbjct: 63 KSIVEKFSEIKNI 75 >gi|261884718|ref|ZP_06008757.1| nitrogen fixation protein NifU [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 162 Score = 61.3 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 8/79 (10%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYR----DGIV--FLSMRGACSGCPSASETLKYG 171 ++ ++ V+D +RP + DGG++ + DG + ++ GACSGC S + Y Sbjct: 85 LKAVEAVIDENIRPMLVMDGGNMEILDIKKEDADGKIDIYIRYLGACSGCASGATGTLYA 144 Query: 172 VANILNHFV-PEVKDIRTV 189 + NIL + P ++ + V Sbjct: 145 IENILQENLSPNIR-VLPV 162 >gi|297624836|ref|YP_003706270.1| nitrogen-fixing NifU domain-containing protein [Truepera radiovictrix DSM 17093] gi|297166016|gb|ADI15727.1| nitrogen-fixing NifU domain protein [Truepera radiovictrix DSM 17093] Length = 198 Score = 61.3 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 38/73 (52%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 D V QR++EVLD + P VA GG + ++ + G C GC +A TL+ G+ Sbjct: 99 DDPVAQRVQEVLDRIINPGVASHGGHVSLAKVEGDAAYVLLGGGCQGCGAADITLRQGIE 158 Query: 174 NILNHFVPEVKDI 186 + VPE+K + Sbjct: 159 EAICSAVPEIKRV 171 >gi|257386971|ref|YP_003176744.1| nitrogen-fixing NifU domain protein [Halomicrobium mukohataei DSM 12286] gi|257169278|gb|ACV47037.1| nitrogen-fixing NifU domain protein [Halomicrobium mukohataei DSM 12286] Length = 120 Score = 61.3 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 4/79 (5%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGD--IVFKGYRDGIVFLSMRGACSGCPSASETLK 169 ES + +RI L P + GG I +G V + + GACSGC + T+ Sbjct: 6 ESGDDLEERITNFLRRNF-PQIQMHGGSAAIQNIDREEGSVTIQLGGACSGCGISPMTI- 63 Query: 170 YGVANILNHFVPEVKDIRT 188 + + +PE+ + Sbjct: 64 QAIKTRMTKEIPEIDTVHA 82 >gi|217979721|ref|YP_002363868.1| Fe-S cluster assembly protein NifU [Methylocella silvestris BL2] gi|217505097|gb|ACK52506.1| Fe-S cluster assembly protein NifU [Methylocella silvestris BL2] Length = 344 Score = 61.3 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 2/92 (2%) Query: 89 DPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG 148 P+ +G+ ++ ++ I+E ++ +RP + +DGGD Sbjct: 234 QPVSRPRVQISPLAPSAPAGEPAMTNLRKIKLIEETIEE-LRPFLRKDGGDCELIDVDGS 292 Query: 149 IVFLSMRGACSGCPSASETLKYGVANILNHFV 180 V + M GAC C AS T+ G+ L + Sbjct: 293 NVLVKMSGACVLCKLASATI-SGIQEKLVEKL 323 >gi|90425924|ref|YP_534294.1| nitrogen-fixing NifU-like [Rhodopseudomonas palustris BisB18] gi|90107938|gb|ABD89975.1| nitrogen-fixing NifU-like [Rhodopseudomonas palustris BisB18] Length = 338 Score = 61.3 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 90 PIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI 149 P + + ++++ E L RP + RDGGD Sbjct: 243 PAPTSAAPRPVLPPSENRDRGTPEQFELIKQAVEAL----RPHLQRDGGDCELVDVDGNT 298 Query: 150 VFLSMRGACSGCPSASETLKYGVANILNHFV 180 ++L + G C C AS TL GV L + Sbjct: 299 IYLRLSGNCVDCQLASVTL-SGVQAQLAEKL 328 >gi|296444642|ref|ZP_06886606.1| Fe-S cluster assembly protein NifU [Methylosinus trichosporium OB3b] gi|296257910|gb|EFH04973.1| Fe-S cluster assembly protein NifU [Methylosinus trichosporium OB3b] Length = 340 Score = 61.0 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 ++ I+E +++ +R + +DGGD V +S+ GAC GC AS T+ G+ L Sbjct: 264 IRLIEETIED-LRVYLRKDGGDCELIDVDGSNVLVSLTGACVGCQMASVTV-SGIQERL 320 >gi|330684995|gb|EGG96670.1| PBS lyase HEAT-like repeat protein [Staphylococcus epidermidis VCU121] Length = 371 Score = 61.0 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 47/102 (46%), Gaps = 2/102 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + ++ + + + + + G+ S+++ DF+ Sbjct: 4 LRVEPTPSPNTMKIVLTEKRQDNQSNTYTTIND-QQPQFINDLLELDGVKSIFYVMDFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLD 103 + K + DWE + P + + + + + G++K + Sbjct: 63 IDKQPKADWEEVLPLITSTLNKEDQTQQESQPDEHFGEVKAE 104 >gi|328906036|gb|EGG25811.1| NifU-like protein [Propionibacterium sp. P08] Length = 156 Score = 61.0 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 15/127 (11%) Query: 67 QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLD 126 + W + + D + + + + E++ Sbjct: 41 EGTWGRIGAGFRTALTTALERTDEWVGG-----------PDSQPLNEVETLRRCTDELIA 89 Query: 127 NRVRPAVARDGGDIVFKGY----RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPE 182 V A GG I ++ V ++M+GAC GCP+A TL + L+ + E Sbjct: 90 GPVGAVAAMHGGSIELVDVSVDGQERRVDVAMKGACRGCPAAVMTLHQRLERQLSLRLHE 149 Query: 183 VKDIRTV 189 + V Sbjct: 150 QVTVHEV 156 >gi|312114730|ref|YP_004012326.1| nitrogen-fixing NifU domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311219859|gb|ADP71227.1| nitrogen-fixing NifU domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 98 Score = 61.0 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 +E+ RI +RP + RDGGD V + M GAC GC AS T+ Sbjct: 16 PVETAEETKLRIIRETIEELRPHLKRDGGDCELLEVEGNFVKVRMTGACVGCQLASVTV- 74 Query: 170 YGVANIL 176 +G+ + Sbjct: 75 HGIQAKI 81 >gi|118474257|ref|YP_892817.1| nitrogen fixation protein NifU [Campylobacter fetus subsp. fetus 82-40] gi|118413483|gb|ABK81903.1| nitrogen fixation protein NifU [Campylobacter fetus subsp. fetus 82-40] Length = 333 Score = 61.0 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 6/67 (8%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYR----DGIV--FLSMRGACSGCPSASETLKYG 171 ++ ++ V+D +RP + DGG++ + DG + ++ GACSGC S + Y Sbjct: 256 LKAVEAVIDENIRPMLVMDGGNMEILDIKKEDADGKIDIYIRYLGACSGCASGATGTLYA 315 Query: 172 VANILNH 178 + NIL Sbjct: 316 IENILQE 322 >gi|261419987|ref|YP_003253669.1| Scaffold protein Nfu/NifU [Geobacillus sp. Y412MC61] gi|319766802|ref|YP_004132303.1| Scaffold protein Nfu/NifU [Geobacillus sp. Y412MC52] gi|261376444|gb|ACX79187.1| Scaffold protein Nfu/NifU [Geobacillus sp. Y412MC61] gi|317111668|gb|ADU94160.1| Scaffold protein Nfu/NifU [Geobacillus sp. Y412MC52] Length = 381 Score = 61.0 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 4/100 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEIS-PLASRIFSIPGIASVYFGY 58 M IQ E TP+P T+K + + L G H + PL + I G+ +Y Sbjct: 1 MRIQAIEPTPSPNTMKILLDEE-LPSGTRHNYKPDNIGEAPPLIQALMRIDGVKGIYHVA 59 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGL 97 DF+ + + +YDW + V + E G G Sbjct: 60 DFLAIERHPKYDWRDILAKVREVFGEKADDGAEAKPKGNE 99 >gi|237807436|ref|YP_002891876.1| Fe-S cluster assembly protein NifU [Tolumonas auensis DSM 9187] gi|237499697|gb|ACQ92290.1| Fe-S cluster assembly protein NifU [Tolumonas auensis DSM 9187] Length = 297 Score = 61.0 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 2/84 (2%) Query: 96 GLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMR 155 M+ + + + + VL+ +RP + DGGD+ + V +++ Sbjct: 198 ATTSMERSKVAPHVDLAKKDENWRTVAAVLEE-MRPRLQADGGDVTLISVTESKVEVALS 256 Query: 156 GACSGCPSASETLKYGVANILNHF 179 G+C GC T+ + L Sbjct: 257 GSCLGCMMTDMTI-AWIQQTLMEK 279 >gi|297530054|ref|YP_003671329.1| Scaffold protein Nfu/NifU [Geobacillus sp. C56-T3] gi|297253306|gb|ADI26752.1| Scaffold protein Nfu/NifU [Geobacillus sp. C56-T3] Length = 381 Score = 61.0 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 4/100 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEIS-PLASRIFSIPGIASVYFGY 58 M IQ E TP+P T+K + + L G H + PL + I G+ +Y Sbjct: 1 MRIQAIEPTPSPNTMKILLDEE-LPSGTRHNYKPDNIGEAPPLIQALMRIDGVKGIYHVA 59 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGL 97 DF+ + + +YDW + V + E G G Sbjct: 60 DFLAIERHPKYDWRDILAKVREVFGEKADDGAEAKPKGNE 99 >gi|170292214|pdb|2K1H|A Chain A, Solution Nmr Structure Of Ser13 From Staphylococcus Epidermidis. Northeast Structural Genomics Consortium Target Ser13 Length = 94 Score = 61.0 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I +TPN T+K + ++ A+E + +R+F I G+ S+++ DFI+ Sbjct: 4 IAISETPNHNTMKVSLSEPRQDNSFTTYTAAQEGQ-PEFINRLFEIEGVKSIFYVLDFIS 62 Query: 63 VGK-DQYDWEHLRPPV 77 + K D +W L P + Sbjct: 63 IDKEDNANWNELLPQI 78 >gi|255323222|ref|ZP_05364357.1| NifU family protein [Campylobacter showae RM3277] gi|255299745|gb|EET79027.1| NifU family protein [Campylobacter showae RM3277] Length = 330 Score = 61.0 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 11/96 (11%) Query: 94 NGGLGDMKLDDMGSGDFIE---SDSAVVQR---IKEVLDNRVRPAVARDGGDIVFKGYRD 147 +D SG F + + VV + I+ V+D VRP + DGG++ + Sbjct: 224 EQEKKQAIIDAQVSGKFDDVSFENMTVVGQLKAIESVIDRDVRPMLMMDGGNMEILDLQK 283 Query: 148 G-----IVFLSMRGACSGCPSASETLKYGVANILNH 178 V++ GACSGC S + Y + N+L Sbjct: 284 DAEGKFDVYIRYMGACSGCASGATGTLYAIENVLQE 319 >gi|146277303|ref|YP_001167462.1| NifU domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145555544|gb|ABP70157.1| nitrogen-fixing NifU domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 241 Score = 61.0 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 S + I EV++ VRP + DGGD+ V + + GACSGC A+ TL G+ Sbjct: 155 SPEEEARLIAEVIET-VRPRLRADGGDVTLLAVDGSKVRVHLTGACSGCQLAALTL-GGL 212 Query: 173 ANIL 176 L Sbjct: 213 QKRL 216 >gi|119963151|ref|YP_946666.1| NifU-like domain-containing protein [Arthrobacter aurescens TC1] gi|119950010|gb|ABM08921.1| putative NifU-like domain protein [Arthrobacter aurescens TC1] Length = 134 Score = 61.0 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 + + ++E L + +RP + GD+ DG+V + AC CP+ S T V + Sbjct: 9 PLEEDLQEAL-SYIRPLLKGHSGDLTIAAVDDGVVTVDFHNACHSCPAISVTFAGLVRSR 67 Query: 176 LNHFVPEVKDIRT 188 L V VKD+R+ Sbjct: 68 LMQ-VDGVKDVRS 79 >gi|154173662|ref|YP_001407485.1| NifU family protein [Campylobacter curvus 525.92] gi|112802143|gb|EAT99487.1| NifU family protein [Campylobacter curvus 525.92] Length = 330 Score = 60.6 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETLKYGV 172 ++ ++ V+D +RP + DGG++ R V++ GACSGC S + Y + Sbjct: 254 LKAVESVIDQEIRPMLMMDGGNLEILDIRKDNDQNVDVYIRYLGACSGCASGAGGTLYAI 313 Query: 173 ANILNH 178 N+L Sbjct: 314 ENVLQE 319 >gi|292654247|ref|YP_003534144.1| NifU-like domain-containing protein [Haloferax volcanii DS2] gi|291371420|gb|ADE03647.1| NifU-like domain protein [Haloferax volcanii DS2] Length = 125 Score = 60.6 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSA 164 S + + + + +R+ L P + GG + G V + + GACSGC + Sbjct: 2 STETQDGEDDLKERVVNFLRRNF-PQIQMHGGSAAIRDLDRETGEVTVLLGGACSGCGIS 60 Query: 165 SETLKYGVANILNHFVPEVKDIRT 188 T+ + + +PE+ ++ Sbjct: 61 PMTI-QAIKTRMVKEIPEINEVHA 83 >gi|289550836|ref|YP_003471740.1| hypothetical protein SLGD_01522 [Staphylococcus lugdunensis HKU09-01] gi|315658333|ref|ZP_07911205.1| scaffold protein Nfu/NifU N [Staphylococcus lugdunensis M23590] gi|289180368|gb|ADC87613.1| hypothetical protein SLGD_01522 [Staphylococcus lugdunensis HKU09-01] gi|315496662|gb|EFU84985.1| scaffold protein Nfu/NifU N [Staphylococcus lugdunensis M23590] Length = 84 Score = 60.6 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 3/81 (3%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 M I+ +TPN T+K + + +++A + + +R+F I G+ S+++ D Sbjct: 1 MQIEAISETPNQNTIKITLSEKRSDNKSDTYTHAADGQ-PEFINRLFDIEGVTSIFYVMD 59 Query: 60 FITVGKD-QYDWEHLRPPVLG 79 FI+V K+ DW+ L P + Sbjct: 60 FISVDKENDKDWDELIPKIQE 80 >gi|270610576|ref|ZP_06221672.1| conserved hypothetical protein [Haemophilus influenzae HK1212] gi|270318075|gb|EFA29333.1| conserved hypothetical protein [Haemophilus influenzae HK1212] Length = 141 Score = 60.6 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 42/132 (31%), Gaps = 8/132 (6%) Query: 22 VLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG- 79 + HF + + RIF + PG + G + + ++ Sbjct: 10 ISDAAQAHFRKLLDTQEEGTNIRIFVVNPGTPNAECGVSYCPPNAVEESDVEIKYDTFSA 69 Query: 80 MIME----HFISGDPIIHNGGLGDMKLDDMGSGDFIE--SDSAVVQRIKEVLDNRVRPAV 133 I E + LG + + D+ +++R++ V+ ++ P + Sbjct: 70 FIDEVSLPFLEEAEIDYVTEELGAQLTLKAPNAKMRKVADDAPLIERVEYVIQTQINPQL 129 Query: 134 ARDGGDIVFKGY 145 A GG I Sbjct: 130 ASHGGRITLIEI 141 >gi|224476560|ref|YP_002634166.1| hypothetical protein Sca_1073 [Staphylococcus carnosus subsp. carnosus TM300] gi|222421167|emb|CAL27981.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 372 Score = 60.6 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 44/88 (50%), Gaps = 2/88 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + ++ KE + + + + G+ S+++ DF+ Sbjct: 4 VRIEPTPSPNTMKVVLNKQREDNQSSTYTAVKEGQ-PEFINHLLDLEGVKSIFYVIDFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGD 89 + K + DWE + P + ++ E +G Sbjct: 63 IDKTPKADWEEVLPKITAVLNEDAGAGK 90 >gi|332299648|ref|YP_004441569.1| nitrogen-fixing NifU domain-containing protein [Porphyromonas asaccharolytica DSM 20707] gi|332176711|gb|AEE12401.1| nitrogen-fixing NifU domain-containing protein [Porphyromonas asaccharolytica DSM 20707] Length = 97 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 31/65 (47%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 S+ V I ++ + VRP + GGDI VF+ + G+C CPS S T++ V Sbjct: 3 DLSSRVDEITTIISSYVRPQLQAHGGDIALLRVAGEQVFVKVSGSCQACPSLSSTIREVV 62 Query: 173 ANILN 177 L Sbjct: 63 QETLR 67 >gi|257470226|ref|ZP_05634317.1| hypothetical protein FulcA4_12862 [Fusobacterium ulcerans ATCC 49185] gi|317064440|ref|ZP_07928925.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313690116|gb|EFS26951.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 92 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDG--IVFLSMRGACSGCPSASETLKYGVANI 175 + +I++ LD +RP + + GDI + Y + + L + G C CP + +T + + Sbjct: 1 MDKIEKFLDEEIRPELRKHNGDISVEEYDEKNRKLVLRLMGQCCTCPHSIDTSENFIKIS 60 Query: 176 LNHFVPEVK 184 + PE++ Sbjct: 61 VREKFPEIE 69 >gi|6226659|sp|P46045|NIFU_FRAAL RecName: Full=Nitrogen fixation protein nifU gi|3953455|gb|AAC82977.1| NifU [Frankia alni] Length = 71 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 6/69 (8%) Query: 127 NRVRPAVARDGGDIVFKGYRDGI------VFLSMRGACSGCPSASETLKYGVANILNHFV 180 +RP + DGG G V L + GAC GC SA+ TL + L + Sbjct: 2 EEIRPMLRGDGGTPRSSPSSRGRSAGSAEVHLRLTGACGGCSSANATLTGVIEARLRQQL 61 Query: 181 PEVKDIRTV 189 PE+ + V Sbjct: 62 PEIGRVALV 70 >gi|288818611|ref|YP_003432959.1| nitrogen-fixing NifU domain protein [Hydrogenobacter thermophilus TK-6] gi|288788011|dbj|BAI69758.1| nitrogen-fixing NifU domain protein [Hydrogenobacter thermophilus TK-6] gi|308752202|gb|ADO45685.1| nitrogen-fixing NifU domain protein [Hydrogenobacter thermophilus TK-6] Length = 83 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 + ++++L ++RPA+ GD+ ++G V+L G C+ CP +LK V + Sbjct: 7 REVEDIL-KKMRPALKDHHGDLKVVEIKEGNVYLQFEGGCTECPIVDASLKEVVDMAIRG 65 Query: 179 FVPEVKDIR 187 + VK + Sbjct: 66 NLSWVKKVE 74 >gi|15791138|ref|NP_280962.1| hypothetical protein VNG2337C [Halobacterium sp. NRC-1] gi|169236893|ref|YP_001690093.1| hypothetical protein OE4292F [Halobacterium salinarum R1] gi|10581748|gb|AAG20442.1| conserved hypothetical protein [Halobacterium sp. NRC-1] gi|167727959|emb|CAP14747.1| conserved hypothetical protein [Halobacterium salinarum R1] Length = 116 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGV 172 S + +R+ L P + GG + DG+V L + GACSGC + T+ + Sbjct: 9 SDLEERVDNFLRRNF-PQIQMHGGTAAVQNINREDGVVDLQLGGACSGCGISPMTI-QAI 66 Query: 173 ANILNHFVPEVKDI 186 + + +PE+ + Sbjct: 67 KSRMTKEIPEIDVV 80 >gi|313887418|ref|ZP_07821107.1| NifU-like protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923060|gb|EFR33880.1| NifU-like protein [Porphyromonas asaccharolytica PR426713P-I] Length = 97 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 31/65 (47%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 S+ V I ++ + VRP + GGDI VF+ + G+C CPS S T++ V Sbjct: 3 DLSSRVDEITTIISSYVRPQLQAHGGDIALLRVAGEEVFVKVSGSCQACPSLSSTIREVV 62 Query: 173 ANILN 177 L Sbjct: 63 QETLR 67 >gi|209963814|ref|YP_002296729.1| Fe-S cluster assembly protein NifU [Rhodospirillum centenum SW] gi|209957280|gb|ACI97916.1| Fe-S cluster assembly protein NifU [Rhodospirillum centenum SW] Length = 326 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASET 167 ++ I+E + RP DGGD V + + GAC+GC A T Sbjct: 257 IRLIEEAIAE-ARPTFLADGGDCELVDVDGRHVHVRLTGACAGCRMARMT 305 >gi|55378751|ref|YP_136601.1| NifU-like domain-containing protein [Haloarcula marismortui ATCC 43049] gi|55231476|gb|AAV46895.1| NifU-like domain protein [Haloarcula marismortui ATCC 43049] Length = 108 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Query: 131 PAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P + + GG+ + + G +++ GACSGC A T+K + L V ++D+ Sbjct: 19 PQIQQHGGNFEVREVDESKGTATVAIGGACSGCGIAPMTMK-AIEQRLPESVDGLEDVEV 77 Query: 189 V 189 V Sbjct: 78 V 78 >gi|257051984|ref|YP_003129817.1| nitrogen-fixing NifU domain protein [Halorhabdus utahensis DSM 12940] gi|256690747|gb|ACV11084.1| nitrogen-fixing NifU domain protein [Halorhabdus utahensis DSM 12940] Length = 121 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 4/84 (4%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSA 164 S + E S + QR+ L P + GG + + G V + + GACSGC + Sbjct: 2 STESQEGSSDLEQRVVNFLRRNF-PQIQMHGGSAAVQDLDEEAGEVTIMLGGACSGCGIS 60 Query: 165 SETLKYGVANILNHFVPEVKDIRT 188 T+ + + + +PE+ + Sbjct: 61 PMTV-QAIKSRMTKEIPEINTVHA 83 >gi|23098646|ref|NP_692112.1| hypothetical protein OB1191 [Oceanobacillus iheyensis HTE831] gi|22776873|dbj|BAC13147.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 87 Score = 59.8 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 3/86 (3%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFS-NAKEAEISPLASRIFSIPGIASVYFGYD 59 M + TPNP +K+ + V+ EG S + + + + + +V+ + Sbjct: 1 MGVHISATPNPNAMKY-TSEKVIFEGTNSISVMPGNTSEYEILNELMKLEEVDNVFGYQN 59 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEH 84 FITV K +WE L P V + +++ Sbjct: 60 FITVNKQFDAEWESLNPKVEELFVKY 85 >gi|73662619|ref|YP_301400.1| hypothetical protein SSP1310 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123775356|sp|Q49XP0|CVFC_STAS1 RecName: Full=Conserved virulence factor C gi|72495134|dbj|BAE18455.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 372 Score = 59.8 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 2/102 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + ++ + + + + ++ G+ S+++ DF+ Sbjct: 4 VRVEPTPSPNTMKIVLNEKRKDNKSNTYTTILDNQ-PKFINDVLAVDGVKSIFYVMDFLA 62 Query: 63 VG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLD 103 V K +YDWE L P V + + S D + G++K + Sbjct: 63 VDKKPKYDWEVLLPKVTATLSDESESIDTPAPDEHFGEVKAE 104 >gi|323703949|ref|ZP_08115578.1| nitrogen-fixing NifU domain protein [Desulfotomaculum nigrificans DSM 574] gi|323531084|gb|EGB20994.1| nitrogen-fixing NifU domain protein [Desulfotomaculum nigrificans DSM 574] Length = 44 Score = 59.8 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 2/45 (4%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD-GIVFLSMRGACSG 160 + +++KE L+ ++RP + RDGGD+ D G+V + +RGAC G Sbjct: 1 MREKVKEALE-KIRPFLQRDGGDVELVDVDDNGVVKVKLRGACGG 44 >gi|303270897|ref|XP_003054810.1| iron-sulfur cluster scaffold protein, plastid precursor [Micromonas pusilla CCMP1545] gi|226462784|gb|EEH60062.1| iron-sulfur cluster scaffold protein, plastid precursor [Micromonas pusilla CCMP1545] Length = 406 Score = 59.8 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 V+ + + LD VRP + DGG++ G DG+V + M GAC C S++ TLK G+ L Sbjct: 254 TVENVDKALDE-VRPYLIADGGNVAVVGIEDGVVAVRMSGACGSCSSSTATLKGGIEKTL 312 Query: 177 NHFVPE--VKDIRT 188 VK++ Sbjct: 313 RRVFGGENVKEVVN 326 >gi|322371460|ref|ZP_08046009.1| nitrogen-fixing NifU domain protein [Haladaptatus paucihalophilus DX253] gi|320548992|gb|EFW90657.1| nitrogen-fixing NifU domain protein [Haladaptatus paucihalophilus DX253] Length = 119 Score = 59.8 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 4/84 (4%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGD--IVFKGYRDGIVFLSMRGACSGCPSA 164 S + E + +R+ L P + GG I G V + + GACSGC + Sbjct: 2 STETQEDGDDLEERVSNFLRRNF-PQIQMHGGSAAIQQIDRETGEVTIMLGGACSGCGIS 60 Query: 165 SETLKYGVANILNHFVPEVKDIRT 188 T+ + + + +PE+ + Sbjct: 61 PMTI-QAIKSRMVKEIPEINKVIA 83 >gi|300785672|ref|YP_003765963.1| thioredoxin-like protein [Amycolatopsis mediterranei U32] gi|299795186|gb|ADJ45561.1| thioredoxin-like protein [Amycolatopsis mediterranei U32] Length = 174 Score = 59.8 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 9/120 (7%) Query: 71 EHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDM-GSGDFIESDSAVVQRIKEVLDNRV 129 L L I+ P + D + + D D+ R++ LD R+ Sbjct: 40 TDLYGEGLTRIVGTLREHAPALVGAIAADDVVASLLALHDLHPLDAQ--ARVRRALD-RI 96 Query: 130 RPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 RP V G + + G DG+V LS+ GA GC SA+ T + V + PEV + V Sbjct: 97 RPQV----GAVGYLGIDDGVVRLSL-GASRGCSSAARTARATVEAAVRDAAPEVSGVEIV 151 >gi|1480126|emb|CAA68019.1| nifU [Pantoea agglomerans] Length = 275 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 8/86 (9%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLS 153 L + + + + + + V+ + L RP + DGGD+ V + Sbjct: 184 EEILKEHPVKNPVAAKVRDENWLAVEEVVASL----RPHIRADGGDMSLVRVDGQEVTVE 239 Query: 154 MRGACSGCPSASETL----KYGVANI 175 + G+CSGC TL + V + Sbjct: 240 LSGSCSGCMMTDMTLAWLQQKLVERM 265 >gi|330685005|gb|EGG96680.1| scaffold protein Nfu/NifU N-terminal domain protein [Staphylococcus epidermidis VCU121] Length = 84 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Query: 7 DTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK- 65 +TPN T+K + + +++A+E + + +F I G+ S+++ DFI+V K Sbjct: 8 ETPNHNTMKITLSESREDMKSNTYTSAEEGQ-PEFINALFDIEGVKSIFYVMDFISVDKE 66 Query: 66 DQYDWEHLRPPV 77 DQ DW+ L P + Sbjct: 67 DQADWQTLIPQI 78 >gi|332971712|gb|EGK10660.1| PBS lyase HEAT domain protein repeat-containing protein [Desmospora sp. 8437] Length = 376 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 10/111 (9%) Query: 1 MFIQ-TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 M I+ E TP+P +K + V + +A R+ +I G+ S++ D Sbjct: 1 MKIRSIEPTPSPNAMKLNMDERVSGGKTYTRDSQDQA--PDYIRRLLAIGGVKSLFQVAD 58 Query: 60 FITVGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD 109 FI+V +D + DW+ + P V + G+ + G D G G+ Sbjct: 59 FISVERDPKADWKQILPRVREV------FGEEVTETHGTTDGYEPTQGYGE 103 >gi|154244065|ref|YP_001415023.1| NifU domain-containing protein [Xanthobacter autotrophicus Py2] gi|154158150|gb|ABS65366.1| nitrogen-fixing NifU domain protein [Xanthobacter autotrophicus Py2] Length = 121 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I+EV++ +RP + RDGGD V + M GAC C ASET+ G+ + + Sbjct: 21 IREVIEE-IRPNLKRDGGDCELVEIDGNKVMVKMTGACVFCKLASETI-EGIQTKIVERL 78 Query: 181 PEVKDIRTV 189 E+ + V Sbjct: 79 GELIRLIPV 87 >gi|304405239|ref|ZP_07386899.1| PBS lyase HEAT domain protein repeat-containing protein [Paenibacillus curdlanolyticus YK9] gi|304346118|gb|EFM11952.1| PBS lyase HEAT domain protein repeat-containing protein [Paenibacillus curdlanolyticus YK9] Length = 389 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%) Query: 5 TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASR-IFSIPGIASVYFGYDFITV 63 E TP+P ++K + +L G H A +P R + +I G+ SV+ DFI + Sbjct: 6 IEPTPSPNSMK-LNVDEMLPRGLRHTYTPDRASEAPEPLRDLLAIEGVRSVFRTADFIAL 64 Query: 64 G-KDQYDWEHLRPPVLGMI 81 K DW+ + ++ Sbjct: 65 DRKPNADWQAILAEARRLL 83 >gi|282891004|ref|ZP_06299509.1| hypothetical protein pah_c045o002 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498997|gb|EFB41311.1| hypothetical protein pah_c045o002 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 261 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 51/117 (43%), Gaps = 10/117 (8%) Query: 77 VLGMIMEHFIS--GDPIIHN--GGLGDMKLDDMGSGDFIESDSAVVQR----IKEVLDNR 128 +L I + F G P+ + ++ ++ G + +++ I+E+++ Sbjct: 135 ILSAIEDAFEKCIGIPVAESYIAPPVPSEIGEVVEGGYPGWKELTIKKKIAVIEEIMNRD 194 Query: 129 VRPAVARDGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYGVANILNHFV-PEV 183 +RP +A DGG + D + + +G C+ C S+ T + +L V P++ Sbjct: 195 IRPYIALDGGGVEVLNILEDREIVIGYQGNCTSCYSSIGTTLSYIQQVLRAKVYPDI 251 >gi|239636890|ref|ZP_04677889.1| conserved virulence factor C [Staphylococcus warneri L37603] gi|239597564|gb|EEQ80062.1| conserved virulence factor C [Staphylococcus warneri L37603] Length = 371 Score = 59.0 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 47/102 (46%), Gaps = 2/102 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + ++ + + + + + G+ S+++ DF+ Sbjct: 4 LRVEPTPSPNTMKVVLTEKRQDNQSNTYTTIND-QQPQFINDLLELDGVKSIFYVMDFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLD 103 + K + DWE + P + + + S + G++K + Sbjct: 63 IDKQPKADWEDVLPLITSTLNKEEHSQQETQPDEHFGEVKAE 104 >gi|15614281|ref|NP_242584.1| hypothetical protein BH1718 [Bacillus halodurans C-125] gi|10174335|dbj|BAB05437.1| BH1718 [Bacillus halodurans C-125] Length = 380 Score = 59.0 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Query: 1 MFIQ-TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 M IQ E TP+P T+K Q + + +++ + E P ++F I G+ VY D Sbjct: 1 MNIQSIEPTPSPNTMKLTLDQTLPQGKSNNYTLKNKEEAPPFIQKLFEIEGVKGVYHVAD 60 Query: 60 FITVGKDQ-YDWEHLRPPVLGM 80 F+ + ++ DW+ + P V + Sbjct: 61 FLAIERNAKVDWKVILPKVRAV 82 >gi|229544329|ref|ZP_04433388.1| HEAT domain containing protein [Bacillus coagulans 36D1] gi|229325468|gb|EEN91144.1| HEAT domain containing protein [Bacillus coagulans 36D1] Length = 374 Score = 59.0 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 2/82 (2%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 M I+ E TP+P T+K + + + ++ +E + P+ RI I G+ VY D Sbjct: 1 MKIKAIEPTPSPNTMKVVLTEALPDGARSNYKKGQEEGVPPVIRRILDIEGVKGVYHVAD 60 Query: 60 FITVGKDQ-YDWEHLRPPVLGM 80 F+ V + DW+ + P V + Sbjct: 61 FLAVERHGKTDWQDILPKVREV 82 >gi|120403404|ref|YP_953233.1| NifU domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119956222|gb|ABM13227.1| nitrogen-fixing NifU domain protein [Mycobacterium vanbaalenii PYR-1] Length = 297 Score = 59.0 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 120 RIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 R+ + LD+ VRP + GGD+ G DG+V L +G+CS CPS+S TL+ V + + Sbjct: 95 RVNDALDS-VRPYLGSHGGDVSLLGVTDGVVRLRFQGSCSSCPSSSVTLELAVQDAILAA 153 Query: 180 VPEVKDIRTV 189 PE+ DI V Sbjct: 154 APEIVDIELV 163 >gi|83314468|ref|XP_730372.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23490077|gb|EAA21937.1| hypothetical protein [Plasmodium yoelii yoelii] Length = 168 Score = 59.0 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 4/74 (5%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + E +S +++ ++ RP + D G + + +++ + G C C S S Sbjct: 1 EELYYELNSENTEKVLNLI----RPKLQIDNGGVELVDIKGNNLYIRLLGNCITCSSNSV 56 Query: 167 TLKYGVANILNHFV 180 T+ + L ++ Sbjct: 57 TVSQVIKKTLKMYI 70 >gi|289548747|ref|YP_003473735.1| nitrogen-fixing NifU domain protein [Thermocrinis albus DSM 14484] gi|289182364|gb|ADC89608.1| nitrogen-fixing NifU domain protein [Thermocrinis albus DSM 14484] Length = 83 Score = 59.0 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Query: 114 DSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 + ++ ++ VL+ ++RPA+ G++ R+G ++L G C+ CP ++K V Sbjct: 2 EEEKLREVEAVLE-KIRPALKEHHGNLKVVDIREGEIYLQFEGGCTDCPIVDASVKDVVD 60 Query: 174 NILNHFVPEVKDIRTV 189 + +P + + V Sbjct: 61 IAIRGNIPWAQKVEIV 76 >gi|319892430|ref|YP_004149305.1| PBS lyase HEAT-like repeat domain protein [Staphylococcus pseudintermedius HKU10-03] gi|317162126|gb|ADV05669.1| PBS lyase HEAT-like repeat domain protein [Staphylococcus pseudintermedius HKU10-03] gi|323464467|gb|ADX76620.1| conserved virulence factor C [Staphylococcus pseudintermedius ED99] Length = 372 Score = 59.0 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I+ E TP+P T+K I + + ++ +++ + I + G+ SV+ DFI Sbjct: 4 IKVEPTPSPNTMKIILSEKRQDNHSKTYTEVTDSQPH-FINAILQVKGVKSVFHVLDFIA 62 Query: 63 VGK-DQYDWEHLRPPVLGMI 81 V K + DWE + P V + Sbjct: 63 VDKAPKADWETVLPLVTATL 82 >gi|56552729|ref|YP_163568.1| nitrogen-fixing NifU domain-containing protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241762522|ref|ZP_04760598.1| nitrogen-fixing NifU domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753632|ref|YP_003226525.1| nitrogen-fixing NifU domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56544303|gb|AAV90457.1| nitrogen-fixing NifU domain protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241372926|gb|EER62603.1| nitrogen-fixing NifU domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552995|gb|ACV75941.1| nitrogen-fixing NifU domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 80 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 +V I+E +RP + RDGGD F D V + M G+C C ++ T+ +G+ Sbjct: 8 QDIVIAIEE-----IRPTLKRDGGDCEFICIEDNKVIVRMTGSCIQCQLSTLTV-HGIQK 61 Query: 175 ILNHFV 180 L + Sbjct: 62 TLIDRI 67 >gi|261417255|ref|YP_003250938.1| nitrogen-fixing NifU domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373711|gb|ACX76456.1| nitrogen-fixing NifU domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325479|gb|ADL24680.1| NifU-like protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 273 Score = 58.7 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 9/100 (9%) Query: 90 PIIHNGGLGDMKLDDMGSGDFIESDSA--------VVQRIKEVLDNRVRPAVARDGGDIV 141 II + +K + E+D+ +++I+ L VR + DGGD+ Sbjct: 140 AIIVREKMERIKYRTQTAEGRAEADAEWNALTKVQKIEKIEAWLHQTVRGTLQGDGGDVQ 199 Query: 142 FKG-YRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 D + + +GAC+GC SA + + + L + V Sbjct: 200 ILDLTDDNRLQIRYQGACAGCGSAMGGTLFYIEDELKNNV 239 >gi|70726478|ref|YP_253392.1| hypothetical protein SH1477 [Staphylococcus haemolyticus JCSC1435] gi|123734994|sp|Q4L6D9|CVFC_STAHJ RecName: Full=Conserved virulence factor C gi|68447202|dbj|BAE04786.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 370 Score = 58.7 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 64/148 (43%), Gaps = 11/148 (7%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + F+ +E + + + +I G+ S+++ DF+ Sbjct: 4 LRVEPTPSPNTMKIVLSNKREDNKSNTFTYIEE-QQPQFINDLLAIDGVKSIFYVMDFLA 62 Query: 63 VGKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI-------ESD 114 + K+ + DWE + P + + + G++K + + SD Sbjct: 63 IDKEPKSDWEVVLPQITSTLNNESFIDSSHKPDEHYGEIKAEALMFKGIPYQIKLTTTSD 122 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVF 142 + Q +++ ++ +DG ++VF Sbjct: 123 ESRKQLPDYFVESMLK--AQKDGDNVVF 148 >gi|16079247|ref|NP_390071.1| lyase [Bacillus subtilis subsp. subtilis str. 168] gi|221310102|ref|ZP_03591949.1| hypothetical protein Bsubs1_12046 [Bacillus subtilis subsp. subtilis str. 168] gi|221314423|ref|ZP_03596228.1| hypothetical protein BsubsN3_11962 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319346|ref|ZP_03600640.1| hypothetical protein BsubsJ_11893 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323621|ref|ZP_03604915.1| hypothetical protein BsubsS_12017 [Bacillus subtilis subsp. subtilis str. SMY] gi|1730911|sp|P54169|YPGR_BACSU RecName: Full=Uncharacterized protein ypgR gi|1256634|gb|AAA96628.1| 25.8% identity over 120 aa with the Synenococcus sp. MpeV protein; putative [Bacillus subtilis subsp. subtilis str. 168] gi|2634608|emb|CAB14106.1| putative lyase [Bacillus subtilis subsp. subtilis str. 168] Length = 377 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 5/94 (5%) Query: 1 MFIQ-TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASR-IFSIPGIASVYFGY 58 M I+ E TP+P T+K I + L G + ++AE +PL I I G+ VY Sbjct: 1 MKIKSIEPTPSPNTMKVILTEE-LPAGKSNNYKPEQAEGAPLVIAEILKIDGVKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVL-GMIMEHFISGDP 90 DF+ V ++ YDW+ + P V ME S + Sbjct: 60 DFLAVERNARYDWKDILPQVRTAFGMESAESAEE 93 >gi|284166626|ref|YP_003404905.1| nitrogen-fixing NifU domain protein [Haloterrigena turkmenica DSM 5511] gi|284016281|gb|ADB62232.1| nitrogen-fixing NifU domain protein [Haloterrigena turkmenica DSM 5511] Length = 104 Score = 58.3 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 4/82 (4%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGD--IVFKGYRDGIVFLSMRGACSGCPSA 164 S + V + + L P + GGD I +G V +++ GACSGC + Sbjct: 2 SESAQSPEDEVREAVSLFLQRNF-PQIQAHGGDSSITAVDLEEGSVEINLTGACSGCGVS 60 Query: 165 SETLKYGVANILNHFVPEVKDI 186 T + L + E+ + Sbjct: 61 PMTT-QAIQRRLPGEIDEIDYV 81 >gi|291484607|dbj|BAI85682.1| hypothetical protein BSNT_03263 [Bacillus subtilis subsp. natto BEST195] Length = 377 Score = 58.3 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 5/94 (5%) Query: 1 MFIQ-TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEIS-PLASRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + L G + ++AE + P+ I I G+ VY Sbjct: 1 MKIKSIEPTPSPNTMKVILTEE-LPAGKSNNYKPEQAEGAPPVIEEILKIDGVKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVL-GMIMEHFISGDP 90 DF+ V ++ YDW+ + P V ME SG+ Sbjct: 60 DFLAVERNARYDWKDILPQVRTAFGMESAESGEE 93 >gi|146342270|ref|YP_001207318.1| putative nifU protein (C-terminal fragment) [Bradyrhizobium sp. ORS278] gi|146195076|emb|CAL79101.1| putative nifU protein (C-terminal fragment) [Bradyrhizobium sp. ORS278] Length = 96 Score = 58.3 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%) Query: 102 LDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGC 161 ++ G + S + I+ V++ VRP + RDGGD + + + GAC C Sbjct: 3 VETQGVVEAPAQMSERERIIRAVIEE-VRPNLKRDGGDCELVEIDGNKIMVKLAGACIFC 61 Query: 162 PSASETLKYGVANILNHFVPEVKDIRTV 189 AS TL G+ + + E + V Sbjct: 62 KLASATL-EGIQARMIEKLGEFVRLVPV 88 >gi|149194816|ref|ZP_01871910.1| nifu-like protein [Caminibacter mediatlanticus TB-2] gi|149134975|gb|EDM23457.1| nifu-like protein [Caminibacter mediatlanticus TB-2] Length = 89 Score = 58.3 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI----VFLSMRGACSGCPSASETLKYG 171 ++ I+EVL + P +A DGG R+ V++ GAC+ C SA + Sbjct: 11 EKIEAIEEVLKKDIMPMLAFDGGYAEIVDVRESNGETHVYIRYGGACAACSSAGGATLFA 70 Query: 172 VANILNHFV 180 + L + Sbjct: 71 IEETLRKRL 79 >gi|148257171|ref|YP_001241756.1| putative nifU protein [Bradyrhizobium sp. BTAi1] gi|146409344|gb|ABQ37850.1| putative nifU protein [Bradyrhizobium sp. BTAi1] Length = 96 Score = 58.3 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 119 QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNH 178 +RI + VRP + RDGGD + + + GAC C AS TL G+ + Sbjct: 19 ERIIRAVIEEVRPNLKRDGGDCELVEIDGNKIMVKLAGACIFCKLASATL-EGIQARMIE 77 Query: 179 FVPEVKDIRTV 189 + E + V Sbjct: 78 KLGEFVRLVPV 88 >gi|260575668|ref|ZP_05843665.1| nitrogen-fixing NifU domain protein [Rhodobacter sp. SW2] gi|259022066|gb|EEW25365.1| nitrogen-fixing NifU domain protein [Rhodobacter sp. SW2] Length = 240 Score = 57.9 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Query: 111 IESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 ++A V RI E ++R DGGD+ + V + + GAC GC AS TL Sbjct: 164 PAEEAAEVARILE----QMRAVFRADGGDVELMEFSGSRVQVHLTGACKGCQMASLTL 217 >gi|134300122|ref|YP_001113618.1| NifU domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052822|gb|ABO50793.1| nitrogen-fixing NifU domain protein [Desulfotomaculum reducens MI-1] Length = 45 Score = 57.9 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 3/46 (6%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSG 160 + +R++E L+ +VRP + RDGGD+ G + GIV + ++GAC G Sbjct: 1 MRERVQEALE-KVRPFLQRDGGDVELVGVDETSGIVKVKLKGACGG 45 >gi|284166941|ref|YP_003405220.1| nitrogen-fixing NifU domain protein [Haloterrigena turkmenica DSM 5511] gi|284016596|gb|ADB62547.1| nitrogen-fixing NifU domain protein [Haloterrigena turkmenica DSM 5511] Length = 123 Score = 57.9 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 4/82 (4%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSA 164 S + + R+ L P + GG + G V +++ GACSGC + Sbjct: 2 STESQNDGDDLEDRVANFLRRNF-PQIQMHGGSAAIQDIDRESGEVSIALGGACSGCGIS 60 Query: 165 SETLKYGVANILNHFVPEVKDI 186 T+ + + + +PE++ + Sbjct: 61 PMTI-QAIKSRMVKEIPEIETV 81 >gi|223043275|ref|ZP_03613322.1| conserved virulence factor C [Staphylococcus capitis SK14] gi|222443486|gb|EEE49584.1| conserved virulence factor C [Staphylococcus capitis SK14] Length = 370 Score = 57.1 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 46/102 (45%), Gaps = 2/102 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + ++ +E + + + + G+ S+++ DF+ Sbjct: 4 VRVEPTPSPNTMKIVLSEKREDNQSNTYTEVRENQ-PQFINDLLKLEGVKSIFYVMDFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLD 103 + K + +WE + P + + + G+++ + Sbjct: 63 IDKQPKANWEDVLPQITSTLNNESSYNQEPQPDEHYGEVRAE 104 >gi|314933619|ref|ZP_07840984.1| putative HEAT repeat [Staphylococcus caprae C87] gi|313653769|gb|EFS17526.1| putative HEAT repeat [Staphylococcus caprae C87] Length = 370 Score = 57.1 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 46/102 (45%), Gaps = 2/102 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + ++ +E + + + + G+ S+++ DF+ Sbjct: 4 VRVEPTPSPNTMKIVLSEKREDNQSNTYTEVRENQ-PQFINDLLKLEGVKSIFYVMDFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLD 103 + K + +WE + P + + + G+++ + Sbjct: 63 IDKQPKANWEDVLPQITSTLNNESSYNQEPQPDEHYGEVRAE 104 >gi|300709486|ref|YP_003735300.1| nitrogen-fixing NifU domain protein [Halalkalicoccus jeotgali B3] gi|299123169|gb|ADJ13508.1| nitrogen-fixing NifU domain protein [Halalkalicoccus jeotgali B3] Length = 120 Score = 57.1 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 5/84 (5%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGD--IVFKGYRDGIVFLSMRGACSGCPSA 164 S + E+D + R+ L P + GG I G V + + GACSGC + Sbjct: 2 STETQEADD-LNDRVMNFLRRNF-PQIQMHGGSAAIQNLDRESGEVTIQLGGACSGCGIS 59 Query: 165 SETLKYGVANILNHFVPEVKDIRT 188 T+ + + + +PE+ + Sbjct: 60 PMTI-QAIKSRMVKEIPEINQVHA 82 >gi|228469892|ref|ZP_04054831.1| Fe-S cluster assembly protein NifU [Porphyromonas uenonis 60-3] gi|228308527|gb|EEK17315.1| Fe-S cluster assembly protein NifU [Porphyromonas uenonis 60-3] Length = 97 Score = 57.1 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 32/68 (47%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 S+ V I ++ + VRP + GGDI VF+ + G+C CPS S T++ V Sbjct: 3 DLSSRVDEITTIISSYVRPQLLAHGGDIALLRVAGEQVFVKVSGSCQACPSLSSTIQEVV 62 Query: 173 ANILNHFV 180 L + Sbjct: 63 QETLRSEL 70 >gi|206576904|ref|YP_002237557.1| Fe-S cluster assembly protein NifU [Klebsiella pneumoniae 342] gi|288934473|ref|YP_003438532.1| Fe-S cluster assembly protein NifU [Klebsiella variicola At-22] gi|290508675|ref|ZP_06548046.1| Fe-S cluster assembly protein NifU [Klebsiella sp. 1_1_55] gi|206565962|gb|ACI07738.1| Fe-S cluster assembly protein NifU [Klebsiella pneumoniae 342] gi|255761126|gb|ACU32726.1| Fe-S cluster assembly protein NifU [Klebsiella variicola At-22] gi|289778069|gb|EFD86066.1| Fe-S cluster assembly protein NifU [Klebsiella sp. 1_1_55] Length = 279 Score = 57.1 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 10/91 (10%) Query: 89 DPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG 148 I+ + + + +VV I E+ RP + DGGD+ Sbjct: 184 AAILAQQPPAPLPAETAHDAHWQ----SVVDTINEL-----RPHIQADGGDMTLLNVTPR 234 Query: 149 IVFLSMRGACSGCPSASETLKYGVANILNHF 179 V +S+ G+CSGC TL + L Sbjct: 235 QVTVSLSGSCSGCMMTDMTL-AWLQQKLMER 264 >gi|307132752|ref|YP_003884768.1| Iron-sulfur cluster assembly scaffold protein NifU [Dickeya dadantii 3937] gi|306530281|gb|ADN00212.1| Iron-sulfur cluster assembly scaffold protein NifU [Dickeya dadantii 3937] Length = 275 Score = 57.1 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 100 MKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACS 159 + + + I A Q++ E + +RP + DGGD+ + V +S+ G+C+ Sbjct: 188 SEHEATPAAAAIVVKDARWQQVAEAVAE-LRPHIQADGGDMSLVNVSERQVTVSLSGSCN 246 Query: 160 GCPSASETL 168 GC TL Sbjct: 247 GCMMTDMTL 255 >gi|56963807|ref|YP_175538.1| hypothetical protein ABC2042 [Bacillus clausii KSM-K16] gi|56910050|dbj|BAD64577.1| conserved hypothetical protein [Bacillus clausii KSM-K16] Length = 372 Score = 57.1 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 6/140 (4%) Query: 1 MFIQ-TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 M+I+ E TP+P T+K + + +AE ++F I GI VY D Sbjct: 1 MYIRSIEPTPSPNTMKINLSEAAAGTSTT-YQEKNKAEAPTFIQQLFDIEGIKQVYHVGD 59 Query: 60 FITVGK-DQYDWEHLRPPVLGMIMEHFIS---GDPIIHNGGLGDMKLDDMGSGDFIESDS 115 F+ V + + DW+ + P + E G+ + G +++ S Sbjct: 60 FLAVDRYPKADWKAILPQIRKQFGEEPDEQAKGNTLHDGYGEVHVQIQMFKGIPMQVKVS 119 Query: 116 AVVQRIKEVLDNRVRPAVAR 135 + ++E L +R AVA+ Sbjct: 120 DGEEEVREGLPDRFAQAVAQ 139 >gi|50121870|ref|YP_051037.1| nitrogen fixation protein [Pectobacterium atrosepticum SCRI1043] gi|49612396|emb|CAG75846.1| nitrogen fixation protein [Pectobacterium atrosepticum SCRI1043] Length = 279 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Query: 95 GGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSM 154 + + + E +++ + + +V+ +RP + DGGD+ D V +S+ Sbjct: 184 AEIIEEQAALPEKFKVPEVETSAWRLVADVVAE-LRPYIQADGGDMALLNVSDHQVTVSL 242 Query: 155 RGACSGCPSASETL 168 G+C GC TL Sbjct: 243 SGSCQGCMMTDMTL 256 >gi|115526511|ref|YP_783422.1| NifU domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115520458|gb|ABJ08442.1| nitrogen-fixing NifU domain protein [Rhodopseudomonas palustris BisA53] Length = 339 Score = 56.7 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 2/95 (2%) Query: 95 GGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSM 154 + +I++ + VRP + RDGGD ++L + Sbjct: 246 APTAMSRSKMPPPESRDRGTPEQYAQIEQAVQG-VRPNLQRDGGDCELIDVDGNTIYLKL 304 Query: 155 RGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 G C C AS T+ G+ + + + + V Sbjct: 305 SGNCLDCQLASVTI-SGIQAQITEKLKRLFRVVPV 338 >gi|149343|gb|AAA25155.1| nifU encoded protein [Klebsiella pneumoniae] Length = 274 Score = 56.7 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 6/74 (8%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 +VV I E+ RP + DGGD+ + V +S+ G+CSGC TL + Sbjct: 206 QSVVDTIAEL-----RPHIQADGGDMALLSVTNHQVTVSLSGSCSGCMMTDMTL-AWLQQ 259 Query: 175 ILNHFVPEVKDIRT 188 L ++ Sbjct: 260 KLMERTGCYMEVVA 273 >gi|128319|sp|P05343|NIFU_KLEPN RecName: Full=Nitrogen fixation protein nifU gi|43830|emb|CAA31674.1| unnamed protein product [Klebsiella pneumoniae] gi|43879|emb|CAA31117.1| nifU gene product (AA 1 - 274) [Klebsiella pneumoniae] Length = 274 Score = 56.7 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 6/74 (8%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 +VV I E+ RP + DGGD+ + V +S+ G+CSGC TL + Sbjct: 206 QSVVDTIAEL-----RPHIQADGGDMALLSVTNHQVTVSLSGSCSGCMMTDMTL-AWLQQ 259 Query: 175 ILNHFVPEVKDIRT 188 L ++ Sbjct: 260 KLMERTGCYMEVVA 273 >gi|154686434|ref|YP_001421595.1| YpgR [Bacillus amyloliquefaciens FZB42] gi|154352285|gb|ABS74364.1| YpgR [Bacillus amyloliquefaciens FZB42] Length = 377 Score = 56.7 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 5/106 (4%) Query: 1 MFIQ-TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISP-LASRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + L G + +A+ +P + I +I G+ VY Sbjct: 1 MKIKSIEPTPSPNTMKVILTEE-LPAGKSNNYKPDQADDAPVVVRDILNIEGVKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGMI-MEHFISGDPIIHNGGLGDMKL 102 DF+ V ++ +DW+ + P V MEH + G++K+ Sbjct: 60 DFLAVERNARFDWKEILPQVRSAFGMEHTEQSESRSEQESFGEVKV 105 >gi|292654582|ref|YP_003534479.1| NifU-like domain-containing protein [Haloferax volcanii DS2] gi|291370083|gb|ADE02310.1| NifU-like domain protein [Haloferax volcanii DS2] Length = 657 Score = 56.3 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 6/103 (5%) Query: 90 PIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRV---RPAVARDGGDIVFK--G 144 + G G S S + +KE ++ + P + GG+ V + Sbjct: 524 AFLSPAGASGEPFHSNPWGSKHRSMSDESESLKERVETWMVGQMPIIQMHGGNSVVRKAD 583 Query: 145 YRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 G V + + GAC+GC ++ T + + + L E+ D++ Sbjct: 584 AESGEVVVELGGACAGCGISNITAQN-IQSDLIMTFDEITDVQ 625 >gi|52786069|ref|YP_091898.1| YpgR [Bacillus licheniformis ATCC 14580] gi|163119502|ref|YP_079487.2| rhodopsin-like GPCR superfamily protein [Bacillus licheniformis ATCC 14580] gi|319645345|ref|ZP_07999578.1| YpgR protein [Bacillus sp. BT1B_CT2] gi|52348571|gb|AAU41205.1| YpgR [Bacillus licheniformis ATCC 14580] gi|145903009|gb|AAU23849.2| Rhodopsin-like GPCR superfamily protein [Bacillus licheniformis ATCC 14580] gi|317393154|gb|EFV73948.1| YpgR protein [Bacillus sp. BT1B_CT2] Length = 378 Score = 56.3 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Query: 1 MFIQ-TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 M I+ E TP+P T+K I + + + ++ P+ + +I G+ VY D Sbjct: 1 MKIKSIEPTPSPNTMKVILTEELPGGKSNNYKKDHAEGAPPVIQEVLNIDGVKGVYHVAD 60 Query: 60 FITVGKDQ-YDWEHLRPPVLGM 80 FI V ++ +DW+ + P V Sbjct: 61 FIAVERNARFDWKDILPKVRAA 82 >gi|294498750|ref|YP_003562450.1| hypothetical protein BMQ_1987 [Bacillus megaterium QM B1551] gi|294348687|gb|ADE69016.1| conserved hypothetical protein [Bacillus megaterium QM B1551] Length = 374 Score = 56.3 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 4/93 (4%) Query: 1 MFIQ-TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISP-LASRIFSIPGIASVYFGY 58 M I+ E TP+P T+K + VL G + K AE +P + I + G+ VY Sbjct: 1 MNIKSIEPTPSPNTMKINLDE-VLSGGKSNNYTEKNAEAAPEVVQDILKVEGVKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDP 90 DF+ V ++ YDW+ + P V E S Sbjct: 60 DFLAVERNAKYDWKQILPQVRAAFGEDLQSNSE 92 >gi|147678467|ref|YP_001212682.1| hypothetical protein PTH_2132 [Pelotomaculum thermopropionicum SI] gi|146274564|dbj|BAF60313.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 47 Score = 56.3 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSG 160 A+ ++++EVL N+VRP + RDGGD+ G+V + ++GAC G Sbjct: 3 AMKEKVQEVL-NKVRPFLQRDGGDVELVDVDASGLVKVRLKGACGG 47 >gi|257462848|ref|ZP_05627254.1| hypothetical protein FuD12_03281 [Fusobacterium sp. D12] gi|317060474|ref|ZP_07924959.1| predicted protein [Fusobacterium sp. D12] gi|313686150|gb|EFS22985.1| predicted protein [Fusobacterium sp. D12] Length = 93 Score = 56.3 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANI 175 +++I+E + ++ P++ GG + Y + L + G C CP + +T++ + Sbjct: 1 MEKIQEYISTKIEPSLRDHGGSLEIVFYDKVKQELQLRLLGQCCSCPHSIDTVENFIKTG 60 Query: 176 LNHFVP 181 L P Sbjct: 61 LQENFP 66 >gi|226311562|ref|YP_002771456.1| hypothetical protein BBR47_19750 [Brevibacillus brevis NBRC 100599] gi|226094510|dbj|BAH42952.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 376 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 8/140 (5%) Query: 5 TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISP-LASRIFSIPGIASVYFGYDFITV 63 E TP+P +K + L +G H K+ +P L +++ I G+ S++ DF+ + Sbjct: 6 IEPTPSPNVMK-LNVDERLPDGVQHVYTKKDTSKAPELMNKLLEIEGVTSIFHTADFLAL 64 Query: 64 -GKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV----- 117 K DW+ + ++ + P + G + F V Sbjct: 65 ERKSNADWQRILTVAREVLHAGGGAAVPDLSAEDAGAFGEAQVYIQMFRGVPMQVKVTMG 124 Query: 118 VQRIKEVLDNRVRPAVARDG 137 ++I+ L R A R G Sbjct: 125 TEQIRAALPERFGQAAVRAG 144 >gi|56420319|ref|YP_147637.1| hypothetical protein GK1784 [Geobacillus kaustophilus HTA426] gi|56380161|dbj|BAD76069.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 383 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 4/94 (4%) Query: 5 TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVG 64 E TP+P T+K + + + + ++ A P+ + I G+ +Y DF+ V Sbjct: 8 IEPTPSPNTMKVLLDEELPFGTSHNYKPDNVAAAPPIIQALMRIEGVKGIYHVADFLAVE 67 Query: 65 K-DQYDWEHL---RPPVLGMIMEHFISGDPIIHN 94 + +YDW + V G + P ++ Sbjct: 68 RHPKYDWRDILTKVREVFGEDVGEAEEEKPTVNE 101 >gi|289582169|ref|YP_003480635.1| nitrogen-fixing NifU domain protein [Natrialba magadii ATCC 43099] gi|289531722|gb|ADD06073.1| nitrogen-fixing NifU domain protein [Natrialba magadii ATCC 43099] Length = 131 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 5/77 (6%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLK 169 ESD+++ +R++ L R P + GG + G V + + G C GC + T Sbjct: 15 ESDTSLRERVESWL-TREMPIIQMHGGTSAVREADPETGEVIIELGGGCKGCSVSDVTTG 73 Query: 170 YGVANILNHFVPEVKDI 186 + L + PE+ ++ Sbjct: 74 N-IKAELIQW-PEIDEV 88 >gi|284166326|ref|YP_003404605.1| nitrogen-fixing NifU domain protein [Haloterrigena turkmenica DSM 5511] gi|284015981|gb|ADB61932.1| nitrogen-fixing NifU domain protein [Haloterrigena turkmenica DSM 5511] Length = 129 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 5/85 (5%) Query: 104 DMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGC 161 D S + + ++ +R++ L + P + GG + G V + + G C GC Sbjct: 5 DAVSDAEDDGEPSLRERVETWLSREM-PIIQMHGGTSAVREVNSETGEVIIELGGGCKGC 63 Query: 162 PSASETLKYGVANILNHFVPEVKDI 186 + T + L + PE+ ++ Sbjct: 64 SVSDVTTGN-IEAELIKW-PEIDEV 86 >gi|75765061|ref|ZP_00744362.1| PBS lyase HEAT-like repeat [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74487453|gb|EAO51368.1| PBS lyase HEAT-like repeat [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 169 Score = 56.0 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L P V + Sbjct: 60 DFLAVERNAKYDWKVLLPQVRAV 82 >gi|321311654|ref|YP_004203941.1| putative lyase [Bacillus subtilis BSn5] gi|320017928|gb|ADV92914.1| putative lyase [Bacillus subtilis BSn5] Length = 377 Score = 56.0 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 5/94 (5%) Query: 1 MFIQ-TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEIS-PLASRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + L G + ++AE + P+ + I I G+ VY Sbjct: 1 MKIKSIEPTPSPNTMKVILTEE-LPAGKSNNYKPEQAEGAPPVIADILKIDGVKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVL-GMIMEHFISGDP 90 DF+ V ++ YDW+ + P V ME S + Sbjct: 60 DFLAVERNARYDWKDILPQVRTAFGMESAESAEE 93 >gi|222151329|ref|YP_002560485.1| hypothetical protein MCCL_1082 [Macrococcus caseolyticus JCSC5402] gi|222120454|dbj|BAH17789.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 240 Score = 56.0 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 15/154 (9%) Query: 4 QTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITV 63 + E TP+P TLK + + + EA + + +I I +V+ DFI+V Sbjct: 5 KIEPTPSPNTLKITLDFNKEDMKSTTYQSI-EASNPAFINELLNIKNIKAVFHALDFISV 63 Query: 64 GKD-QYDWEHLRPPVLGMIMEHFISGD-PIIHNGGLGDMKLDDMGSGDFIESDSAVV--- 118 K+ DW+ L P I + F SG +++ +GD+ + +F + Sbjct: 64 DKNPSSDWDILLPE----IKQVFASGSIADVNHQPVGDLGEKQVEVLEFKNIPYQIKITY 119 Query: 119 --QRIKEVLDNRVRPAV---ARDGGDIVFKGYRD 147 +++ LD R A+ D I+ + + D Sbjct: 120 RDSEVRKQLDLRFIDAMLDSQNDDNVILLRRWVD 153 >gi|169237452|ref|YP_001690656.1| hypothetical protein OE5162D1F [Halobacterium salinarum R1] gi|167728679|emb|CAP15523.1| hypothetical protein OE5162D1F [Halobacterium salinarum R1] Length = 118 Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Query: 131 PAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 P + + GG+ + + G +++ GACSGC A T+ + + L + ++ D+ Sbjct: 29 PQIQQHGGNFEIREIDEAAGTATVAIGGACSGCGIAPMTM-NAIESRLPESLDDLDDVTV 87 Query: 189 V 189 V Sbjct: 88 V 88 >gi|282916696|ref|ZP_06324454.1| conserved virulence factor C [Staphylococcus aureus subsp. aureus D139] gi|283770500|ref|ZP_06343392.1| conserved virulence factor C [Staphylococcus aureus subsp. aureus H19] gi|282319183|gb|EFB49535.1| conserved virulence factor C [Staphylococcus aureus subsp. aureus D139] gi|283460647|gb|EFC07737.1| conserved virulence factor C [Staphylococcus aureus subsp. aureus H19] Length = 374 Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 6/102 (5%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + + +E + +++ SI GI S++ +F+ Sbjct: 4 LRIEPTPSPNTMKVVLSFTREDKLSNTYKKVEETQ-PRFINQLLSIDGITSIFHVMNFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLD 103 V K + DWE + P + + F G+ ++ + + Sbjct: 63 VDKAPKADWEVILPDIKAV----FSDGNKVLESVNEAQIDNH 100 >gi|110668993|ref|YP_658804.1| NifU domain-containing protein [Haloquadratum walsbyi DSM 16790] gi|109626740|emb|CAJ53207.1| nifU protein C-terminal domain homolog [Haloquadratum walsbyi DSM 16790] Length = 140 Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 8/111 (7%) Query: 82 MEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRV---RPAVARDGG 138 M +F +G P + G + + ESD + ++ ++N + P + GG Sbjct: 1 MTYFSTGSP--NVGPTASFHIIALKKTVMSESDQTQTESLRHRIENWMVGQMPIIQMHGG 58 Query: 139 DIVFK--GYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 + V + G V + + GAC+GC ++ T + + + L V+D+R Sbjct: 59 ESVVRKADPETGEVVVELGGACAGCGISNLTAEN-IKSDLIMDFDRVEDVR 108 >gi|148508065|gb|ABQ75862.1| nifU C-terminal domain-like protein [uncultured haloarchaeon] Length = 143 Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 4/86 (4%) Query: 105 MGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGD--IVFKGYRDGIVFLSMRGACSGCP 162 + D + +R+ L P + GG I G V + + GACSGC Sbjct: 23 TETADAENETKELKERVTNFLRRNF-PQIQMHGGSAAIQHLDPEAGEVSIQLGGACSGCG 81 Query: 163 SASETLKYGVANILNHFVPEVKDIRT 188 + T+ + + + + E++ + Sbjct: 82 ISPMTI-QAIKSRMVKEISEIETVHA 106 >gi|212639454|ref|YP_002315974.1| HEAT repeats containing protein [Anoxybacillus flavithermus WK1] gi|212560934|gb|ACJ33989.1| HEAT repeats containing protein [Anoxybacillus flavithermus WK1] Length = 379 Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 7/100 (7%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISP-LASRIFSIPGIASVYFGY 58 M IQ E TP+P T+K + + L G + +AE +P + ++ I G+ +Y Sbjct: 1 MKIQAIEPTPSPNTMKVLLDEE-LPFGTSYNYKPSQAEQAPEIIQQLLKIEGVKGIYHVA 59 Query: 59 DFITVGKDQ-YDWEHL---RPPVLGMIMEHFISGDPIIHN 94 DF+ V + YDW+ + V G +E + ++ Sbjct: 60 DFLAVERHAKYDWKPILTKVREVFGEQVEPLQENKAVRND 99 >gi|313682658|ref|YP_004060396.1| sel1 domain protein repeat-containing protein [Sulfuricurvum kujiense DSM 16994] gi|313155518|gb|ADR34196.1| Sel1 domain protein repeat-containing protein [Sulfuricurvum kujiense DSM 16994] Length = 296 Score = 55.2 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 9/117 (7%) Query: 71 EHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVR 130 ++ + S + D+ + +S+ +I+ V+ + Sbjct: 177 NSMKWMIRAA--HAGESQAHSLLTYVSNQNDASDINVTFRMMDESSQRAKIESVITENLA 234 Query: 131 PAVARDGGDIVFKGYRDGI---VFLSMRGACSGC---PSASETL-KYGVANILNHFV 180 P +A DGG + Y G ++L GACSGC P+++ + NI++ + Sbjct: 235 PILASDGGGVELVNYVGGDTPEIWLRYLGACSGCHLGPTSTAGMILEQFENIIDKKI 291 >gi|288556161|ref|YP_003428096.1| hypothetical protein BpOF4_15775 [Bacillus pseudofirmus OF4] gi|288547321|gb|ADC51204.1| hypothetical protein BpOF4_15775 [Bacillus pseudofirmus OF4] Length = 378 Score = 55.2 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFI-QTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISP-LASRIFSIPGIASVYFGY 58 M I E TP+P T+K + L +G+ + N K +P +F+I G+ SVY Sbjct: 1 MHILSIEPTPSPNTMKLTLSES-LGQGSRNSYNEKNKGEAPEYIQELFNIEGVKSVYHVA 59 Query: 59 DFITVGK-DQYDWEHLRPPVLGM 80 DF+ + + + DW+ + P V + Sbjct: 60 DFLAIDRHPKVDWKVILPKVREV 82 >gi|311068699|ref|YP_003973622.1| putative lyase [Bacillus atrophaeus 1942] gi|310869216|gb|ADP32691.1| putative lyase [Bacillus atrophaeus 1942] Length = 376 Score = 55.2 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 2/82 (2%) Query: 1 MFIQ-TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 M I+ E TP+P T+K I + + + ++ + P+ + I I G+ VY D Sbjct: 1 MKIKSIEPTPSPNTMKVILTEELPAGKSNNYKPDQTEGAPPVVAEILKIEGVKGVYHVAD 60 Query: 60 FITVGKDQ-YDWEHLRPPVLGM 80 F+ V ++ YDW+ + P V Sbjct: 61 FLAVERNARYDWKDILPQVRSA 82 >gi|162449342|ref|YP_001611709.1| NifU domain-containing protein [Sorangium cellulosum 'So ce 56'] gi|161159924|emb|CAN91229.1| nifU domain protein [Sorangium cellulosum 'So ce 56'] Length = 87 Score = 55.2 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177 + ++ +V + P V DGG++ + L + GACSGCP A T + + + Sbjct: 5 IDQLLKVCREVIAPLVRADGGELYIVAVEPDHLTLHLAGACSGCPGAMLTARAVIEPAVL 64 Query: 178 HFVP 181 P Sbjct: 65 AVAP 68 >gi|312438168|gb|ADQ77239.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH60] Length = 374 Score = 55.2 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 65/161 (40%), Gaps = 21/161 (13%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + + +E + +++ SI GI S++ +F+ Sbjct: 4 LRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEENQ-PRFINQLLSIDGITSIFHVMNFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGMI---MEHFISGDPIIHNGGLGDMKLDDMG------SGDFIE 112 V K + DWE + P + + SG + G++K + + Sbjct: 63 VDKAPKADWEDILPDIKAAFSGESQVLESGKDPQIDNHFGEIKAELLTFKGIPYQIKLTS 122 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLS 153 +D + +++ + + + A + D IVF+ Sbjct: 123 ADQELREQLPQTYVDHMTQAQTKH----------DNIVFMR 153 >gi|196249225|ref|ZP_03147924.1| PBS lyase HEAT domain protein repeat-containing protein [Geobacillus sp. G11MC16] gi|196211454|gb|EDY06214.1| PBS lyase HEAT domain protein repeat-containing protein [Geobacillus sp. G11MC16] Length = 347 Score = 55.2 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEIS-PLASRIFSIPGIASVYFGY 58 M I+ E TP+P T+K + + L G H + PL + I G+ +Y Sbjct: 1 MRIKAIEPTPSPNTMKILLDEE-LPSGMRHNYKPDNIGEAPPLIQTLMRINGVKGIYHVA 59 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGDP 90 DF+ + + +YDW + V + E G Sbjct: 60 DFLAIERHPKYDWRDILANVREVFGEEADDGAE 92 >gi|300712381|ref|YP_003738195.1| nitrogen-fixing NifU domain protein [Halalkalicoccus jeotgali B3] gi|299126064|gb|ADJ16403.1| nitrogen-fixing NifU domain protein [Halalkalicoccus jeotgali B3] Length = 115 Score = 55.2 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Query: 104 DMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCP 162 D + E++ A+ +++ L ++ P + GG + G V + + G C GC Sbjct: 4 DTDEPEVAETEEALRSKVETWLAKQM-PIIQMHGGTSAVRKADPGGEVIVELGGGCRGCE 62 Query: 163 SASETLKYGVANILNHFVPEVKD 185 + T + L + PE+++ Sbjct: 63 ISDVTTGN-IEAELLQW-PEIEE 83 >gi|167391701|ref|XP_001739894.1| hypothetical protein [Entamoeba dispar SAW760] gi|165896233|gb|EDR23708.1| hypothetical protein EDI_167670 [Entamoeba dispar SAW760] Length = 110 Score = 55.2 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETLKYGV 172 + ++ +V + + P V +DGG++ +DG IV++ G C GC +A+ K + Sbjct: 5 ISKLNQVFEQYIDPIVKKDGGNVEVYEVKDGVNGEIIVYIQYSGKCVGCAAANGATKEKI 64 Query: 173 ANILNH 178 IL Sbjct: 65 QTILRD 70 >gi|242373741|ref|ZP_04819315.1| PBS lyase [Staphylococcus epidermidis M23864:W1] gi|242348561|gb|EES40163.1| PBS lyase [Staphylococcus epidermidis M23864:W1] Length = 370 Score = 55.2 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + + + + + + G+ S+++ DF+ Sbjct: 4 VRVEPTPSPNTMKIVLSEKREDNQSNTY-TEVQNHQPQFINDLLQLEGVKSIFYVMDFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGMIME 83 + K + DWE + P + + Sbjct: 63 IDKQPKADWESVLPQITSTLNN 84 >gi|49483620|ref|YP_040844.1| hypothetical protein SAR1442 [Staphylococcus aureus subsp. aureus MRSA252] gi|257425493|ref|ZP_05601918.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428153|ref|ZP_05604551.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430784|ref|ZP_05607166.1| conserved virulence factor C [Staphylococcus aureus subsp. aureus 68-397] gi|257433543|ref|ZP_05609901.1| PBS lyase HEAT domain-containing protein repeat-containing protein [Staphylococcus aureus subsp. aureus E1410] gi|257436384|ref|ZP_05612431.1| PBS lyase HEAT domain-containing protein repeat-containing protein [Staphylococcus aureus subsp. aureus M876] gi|282904011|ref|ZP_06311899.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C160] gi|282905776|ref|ZP_06313631.1| PBS lyase HEAT domain-containing protein repeat-containing protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282908746|ref|ZP_06316564.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911009|ref|ZP_06318811.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282914219|ref|ZP_06322006.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M899] gi|282919141|ref|ZP_06326876.1| conserved virulence factor [Staphylococcus aureus subsp. aureus C427] gi|282924324|ref|ZP_06331998.1| conserved virulence factor C [Staphylococcus aureus subsp. aureus C101] gi|283958194|ref|ZP_06375645.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus A017934/97] gi|293501245|ref|ZP_06667096.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 58-424] gi|293510206|ref|ZP_06668914.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|293526800|ref|ZP_06671484.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M1015] gi|295427940|ref|ZP_06820572.1| hypothetical protein SIAG_00464 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591095|ref|ZP_06949733.1| PBS lyase HEAT family repeat protein [Staphylococcus aureus subsp. aureus MN8] gi|81651139|sp|Q6GGX8|CVFC_STAAR RecName: Full=Conserved virulence factor C gi|49241749|emb|CAG40439.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257271950|gb|EEV04088.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257274994|gb|EEV06481.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278912|gb|EEV09531.1| conserved virulence factor C [Staphylococcus aureus subsp. aureus 68-397] gi|257281636|gb|EEV11773.1| PBS lyase HEAT domain-containing protein repeat-containing protein [Staphylococcus aureus subsp. aureus E1410] gi|257284666|gb|EEV14786.1| PBS lyase HEAT domain-containing protein repeat-containing protein [Staphylococcus aureus subsp. aureus M876] gi|282313711|gb|EFB44104.1| conserved virulence factor C [Staphylococcus aureus subsp. aureus C101] gi|282316951|gb|EFB47325.1| conserved virulence factor [Staphylococcus aureus subsp. aureus C427] gi|282322287|gb|EFB52611.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M899] gi|282324704|gb|EFB55014.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282327010|gb|EFB57305.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331068|gb|EFB60582.1| PBS lyase HEAT domain-containing protein repeat-containing protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282595629|gb|EFC00593.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C160] gi|283790343|gb|EFC29160.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus A017934/97] gi|290920358|gb|EFD97422.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M1015] gi|291096250|gb|EFE26511.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 58-424] gi|291467150|gb|EFF09668.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|295128298|gb|EFG57932.1| hypothetical protein SIAG_00464 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575981|gb|EFH94697.1| PBS lyase HEAT family repeat protein [Staphylococcus aureus subsp. aureus MN8] Length = 374 Score = 54.8 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 65/161 (40%), Gaps = 21/161 (13%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + + +E + +++ SI GI S++ +F+ Sbjct: 4 LRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEENQ-PRFINQLLSIDGITSIFHVMNFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGMI---MEHFISGDPIIHNGGLGDMKLDDMG------SGDFIE 112 V K + DWE + P + + SG + G++K + + Sbjct: 63 VDKAPKADWEDILPDIKAAFSGESQVLESGKDPQIDNHFGEIKAELLTFKGIPYQIKLTS 122 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLS 153 +D + +++ + + + A + D IVF+ Sbjct: 123 ADQELREQLPQTYVDHMTQAQTKH----------DNIVFMR 153 >gi|119029405|gb|ABL59928.1| NifU [uncultured bacterium] Length = 311 Score = 54.8 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + Q ++ ++ VRP + +GGDI + ++ + A SA +TLK V L Sbjct: 239 LGQLVETAIEAVVRPLLQDEGGDIELVDIKGEKIYCRLTVAPGQSASADQTLKLLVEQQL 298 Query: 177 NHFVPEVKDIRTV 189 V + + V Sbjct: 299 KEQVDDRLQVIAV 311 >gi|302868225|ref|YP_003836862.1| nitrogen-fixing NifU domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302571084|gb|ADL47286.1| nitrogen-fixing NifU domain protein [Micromonospora aurantiaca ATCC 27029] Length = 99 Score = 54.8 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVP 181 LD +VR V GG + DG ++ G C+ CPSA T+ V L Sbjct: 11 DRALDGKVRQLVEAHGGGVTVDVDADGDARVTFHGRCAACPSAPVTMGSLVRPALLK--- 67 Query: 182 EVKDIRTV 189 ++ +R+V Sbjct: 68 -IEGVRSV 74 >gi|289581666|ref|YP_003480132.1| nitrogen-fixing NifU domain protein [Natrialba magadii ATCC 43099] gi|289531219|gb|ADD05570.1| nitrogen-fixing NifU domain protein [Natrialba magadii ATCC 43099] Length = 119 Score = 54.8 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 4/74 (5%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGV 172 + R+ L P + GG + G V +++ GACSGC + T+ + Sbjct: 9 DDLEDRVANFLRRNF-PQIQMHGGSAAIQELDRESGEVTIALGGACSGCGISPMTI-QAI 66 Query: 173 ANILNHFVPEVKDI 186 + + +PE++ + Sbjct: 67 KSRMVKEIPEIEKV 80 >gi|298694723|gb|ADI97945.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ED133] Length = 374 Score = 54.8 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 6/102 (5%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + + +E + +++ SI GI S++ +F+ Sbjct: 4 LRIEPTPSPNTMKVVLSFTREDKLSNTYKKVEETQ-PRFINQLLSIDGITSIFHVMNFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLD 103 V K + DWE + P + + F G+ ++ + + Sbjct: 63 VDKAPKADWEVILPDIKAV----FSDGNKVLESVNEPQIDNH 100 >gi|315195325|gb|EFU25712.1| hypothetical protein CGSSa00_06630 [Staphylococcus aureus subsp. aureus CGS00] Length = 374 Score = 54.8 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 65/161 (40%), Gaps = 21/161 (13%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + + +E + +++ SI GI S++ +F+ Sbjct: 4 LRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEENQ-PRFINQLLSIDGITSIFHVMNFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGMI---MEHFISGDPIIHNGGLGDMKLDDMG------SGDFIE 112 V K + DWE + P + + SG + G++K + + Sbjct: 63 VDKAPKADWEDILPDIKAAFSGESQVLESGKDPQIDNHFGEIKAELLTFKGIPYQIKLTS 122 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLS 153 +D + +++ + + + A + D IVF+ Sbjct: 123 ADQELREQLPQTYVDHMTQAQTKH----------DNIVFMR 153 >gi|296329494|ref|ZP_06871981.1| putative lyase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674819|ref|YP_003866491.1| putative lyase [Bacillus subtilis subsp. spizizenii str. W23] gi|296153376|gb|EFG94238.1| putative lyase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413063|gb|ADM38182.1| putative lyase [Bacillus subtilis subsp. spizizenii str. W23] Length = 377 Score = 54.8 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 4/81 (4%) Query: 1 MFIQ-TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEIS-PLASRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + L G + +AE + P+ + I I G+ VY Sbjct: 1 MKIKSIEPTPSPNTMKVILTEE-LPAGKSNNYKPDQAEGAPPVIAEILKIEGVKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVL 78 DF+ V ++ YDW+ + P V Sbjct: 60 DFLAVERNARYDWKDILPQVR 80 >gi|159466680|ref|XP_001691526.1| iron-sulfur cluster assembly protein [Chlamydomonas reinhardtii] gi|158278872|gb|EDP04634.1| iron-sulfur cluster assembly protein [Chlamydomonas reinhardtii] Length = 489 Score = 54.8 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 4/101 (3%) Query: 89 DPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG 148 + + G L + SG S V+ + LD VRP + DGGD+ +G Sbjct: 315 EATMDEGDLIKERQQAGSSGRSGRELS--VEAVTAALDE-VRPYLEADGGDVEVVEVENG 371 Query: 149 IVFLSMRGACSGCPSASETLKYGVANILNHFV-PEVKDIRT 188 +V+L ++GACS CPS S T+K G+ + + +V+DI Sbjct: 372 VVYLRLQGACSSCPSQSATMKGGIERAIRNAFGDQVRDILQ 412 >gi|229017494|ref|ZP_04174395.1| hypothetical protein bcere0030_20470 [Bacillus cereus AH1273] gi|229023708|ref|ZP_04180200.1| hypothetical protein bcere0029_20430 [Bacillus cereus AH1272] gi|228737633|gb|EEL88137.1| hypothetical protein bcere0029_20430 [Bacillus cereus AH1272] gi|228743818|gb|EEL93919.1| hypothetical protein bcere0030_20470 [Bacillus cereus AH1273] Length = 375 Score = 54.8 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 10/105 (9%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKL 102 DF+ V ++ YDW+ L V + G+ I+ + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV------FGEEIVEESAEQQLSH 98 >gi|67481077|ref|XP_655888.1| Fe-S cluster assembly protein NifU [Entamoeba histolytica HM-1:IMSS] gi|21654852|gb|AAK85709.1| iron-sulfur cluster NifU-like protein [Entamoeba histolytica] gi|56473060|gb|EAL50508.1| Fe-S cluster assembly protein NifU, putative [Entamoeba histolytica HM-1:IMSS] Length = 348 Score = 54.4 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETLKYGV 172 + ++ +V + + P V +DGG + +DG IV++ G C GC +A+ K + Sbjct: 246 ISKLNQVFEQYIDPIVKKDGGSVEVYEVKDGVNGEIIVYIQYSGKCVGCAAANGATKEKI 305 Query: 173 ANILNH 178 IL Sbjct: 306 QTILRD 311 >gi|28188323|gb|AAL91100.1| NifU [Entamoeba histolytica] Length = 348 Score = 54.4 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%) Query: 118 VQRIKEVLDNRVRPAVARDGGDIVFKGYRDG-----IVFLSMRGACSGCPSASETLKYGV 172 + ++ +V + + P V +DGG + +DG IV++ G C GC +A+ K + Sbjct: 246 ISKLNQVFEQYIDPIVKKDGGSVEVYEVKDGVNGEIIVYIQYSGKCVGCAAANGATKEKI 305 Query: 173 ANILNH 178 IL Sbjct: 306 QTILRD 311 >gi|295704071|ref|YP_003597146.1| PBS lyase HEAT-like repeat family protein [Bacillus megaterium DSM 319] gi|294801730|gb|ADF38796.1| PBS lyase HEAT-like repeat family protein [Bacillus megaterium DSM 319] Length = 374 Score = 54.4 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 4/93 (4%) Query: 1 MFIQ-TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISP-LASRIFSIPGIASVYFGY 58 M I+ E TP+P T+K + VL G + K AE +P + I + G+ VY Sbjct: 1 MNIKSIEPTPSPNTMKINLDE-VLSGGKSNNYTEKNAEAAPEVVQDILKVEGVKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGMIMEHFISGDP 90 DF+ V ++ YDW+ + P V E Sbjct: 60 DFLAVERNAKYDWKQILPQVRAAFGEDLQDNSE 92 >gi|239827011|ref|YP_002949635.1| PBS lyase HEAT domain protein repeat-containing protein [Geobacillus sp. WCH70] gi|239807304|gb|ACS24369.1| PBS lyase HEAT domain protein repeat-containing protein [Geobacillus sp. WCH70] Length = 377 Score = 54.4 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 9/105 (8%) Query: 5 TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEIS-PLASRIFSIPGIASVYFGYDFITV 63 E TP+P T+K + + L G H + + PL ++ I G+ +Y DF+ V Sbjct: 7 IEPTPSPNTMKVLLDEE-LPFGTSHNYKPDNVDTAPPLIQQLMKIEGVKGIYHVADFLAV 65 Query: 64 GKD-QYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGS 107 ++ +YDW+ + V + G+ + + G Sbjct: 66 ERNPKYDWKEILTKVREV------FGEEVDSEQEETKKTNEHFGE 104 >gi|323438445|gb|EGA96199.1| hypothetical protein SAO11_2708 [Staphylococcus aureus O11] Length = 374 Score = 54.4 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + + +E + +++ SI GI S++ +F+ Sbjct: 4 LRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEETQ-PGFINQLLSIDGITSIFHVMNFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGM 80 V K + DWE + P + Sbjct: 63 VDKAPKADWEVILPDIKAA 81 >gi|138895333|ref|YP_001125786.1| HEAT repeat-containing PBS lyase [Geobacillus thermodenitrificans NG80-2] gi|134266846|gb|ABO67041.1| PBS lyase HEAT-like repeat domain protein [Geobacillus thermodenitrificans NG80-2] Length = 383 Score = 54.0 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEIS-PLASRIFSIPGIASVYFGY 58 M I+ E TP+P T+K + + L G H + PL + I G+ +Y Sbjct: 1 MRIKAIEPTPSPNTMKILLDEE-LPSGMRHNYKPDNIGEAPPLIQTLMRINGVKGIYHVA 59 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGDP 90 DF+ + + +YDW + V + E G Sbjct: 60 DFLAIERHPKYDWRDILANVREVFGEEADDGAE 92 >gi|110669335|ref|YP_659146.1| NifU domain-containing protein [Haloquadratum walsbyi DSM 16790] gi|109627082|emb|CAJ53561.1| nifU protein C-terminal domain homolog [Haloquadratum walsbyi DSM 16790] Length = 123 Score = 54.0 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 4/86 (4%) Query: 105 MGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGD--IVFKGYRDGIVFLSMRGACSGCP 162 + D + +R+ L P + GG I G V + + GACSGC Sbjct: 3 TETADAENETKELKERVTNFLRRNF-PQIQMHGGSAAIQHLDPEAGEVSIQLGGACSGCG 61 Query: 163 SASETLKYGVANILNHFVPEVKDIRT 188 + T+ + + + + E++ + Sbjct: 62 ISPMTI-QAIKSRMVKEISEIETVHA 86 >gi|218903310|ref|YP_002451144.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus AH820] gi|218535371|gb|ACK87769.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus AH820] Length = 375 Score = 54.0 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTKENTEQAPVQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|323444083|gb|EGB01694.1| hypothetical protein SAO46_0193 [Staphylococcus aureus O46] Length = 374 Score = 54.0 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + + +E + +++ SI GI S++ +F+ Sbjct: 4 LRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEETQ-PGFINQLLSIDGITSIFHVMNFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGM 80 V K + DWE + P + Sbjct: 63 VDKAPKADWEVILPDIKAA 81 >gi|258422538|ref|ZP_05685446.1| HEAT repeat-containing PBS lyase [Staphylococcus aureus A9635] gi|257847295|gb|EEV71301.1| HEAT repeat-containing PBS lyase [Staphylococcus aureus A9635] Length = 374 Score = 54.0 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 64/161 (39%), Gaps = 21/161 (13%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + + +E + +++ SI GI S++ +F+ Sbjct: 4 LRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEENQ-PRFINQLLSIDGITSIFHVMNFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGMI---MEHFISGDPIIHNGGLGDMKLDDMG------SGDFIE 112 V K + DWE + P + + SG + G++K + + Sbjct: 63 VDKAPKADWEVILPDIKAAFSGESQVLESGKDPQIDNHFGEIKAELLTFKGIPYQIKLTS 122 Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLS 153 +D + +++ + + + A D IVF+ Sbjct: 123 ADQELREQLPQTYVDHMTQAQTEH----------DNIVFMR 153 >gi|242237955|ref|YP_002986136.1| Fe-S cluster assembly protein NifU [Dickeya dadantii Ech703] gi|242130012|gb|ACS84314.1| Fe-S cluster assembly protein NifU [Dickeya dadantii Ech703] Length = 277 Score = 54.0 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 1/75 (1%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLS 153 L + I Q + E + +RP + DGGD+ V +S Sbjct: 184 AAILSEQASQPDAVAATIAVRDPQWQLVAEAVAE-LRPHIQADGGDMSLLNVSGHQVTVS 242 Query: 154 MRGACSGCPSASETL 168 + G+CSGC TL Sbjct: 243 LSGSCSGCMMTDMTL 257 >gi|229029909|ref|ZP_04185978.1| hypothetical protein bcere0028_19920 [Bacillus cereus AH1271] gi|228731417|gb|EEL82330.1| hypothetical protein bcere0028_19920 [Bacillus cereus AH1271] Length = 375 Score = 54.0 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|228907934|ref|ZP_04071785.1| hypothetical protein bthur0013_20980 [Bacillus thuringiensis IBL 200] gi|228851693|gb|EEM96496.1| hypothetical protein bthur0013_20980 [Bacillus thuringiensis IBL 200] Length = 375 Score = 54.0 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|254421536|ref|ZP_05035254.1| PBS lyase HEAT-like repeat domain protein [Synechococcus sp. PCC 7335] gi|196189025|gb|EDX83989.1| PBS lyase HEAT-like repeat domain protein [Synechococcus sp. PCC 7335] Length = 405 Score = 54.0 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 5 TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVG 64 E TP+P +K +V E + AE++ + + +I G+ SV+ DF+T+ Sbjct: 6 IETTPSPNCMKLTLDRVASNEPITLKTGDPTAEVAKVFQNLLAIEGVQSVFAMNDFVTLT 65 Query: 65 -KDQYDWEHL 73 K DW+ + Sbjct: 66 RKGSADWQSV 75 >gi|228900795|ref|ZP_04065010.1| hypothetical protein bthur0014_19970 [Bacillus thuringiensis IBL 4222] gi|228858721|gb|EEN03166.1| hypothetical protein bthur0014_19970 [Bacillus thuringiensis IBL 4222] Length = 375 Score = 54.0 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|228920917|ref|ZP_04084255.1| hypothetical protein bthur0011_19280 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838706|gb|EEM84009.1| hypothetical protein bthur0011_19280 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 375 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|228939316|ref|ZP_04101908.1| hypothetical protein bthur0008_19760 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972194|ref|ZP_04132809.1| hypothetical protein bthur0003_19700 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978808|ref|ZP_04139178.1| hypothetical protein bthur0002_20100 [Bacillus thuringiensis Bt407] gi|228780910|gb|EEM29118.1| hypothetical protein bthur0002_20100 [Bacillus thuringiensis Bt407] gi|228787507|gb|EEM35471.1| hypothetical protein bthur0003_19700 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820340|gb|EEM66373.1| hypothetical protein bthur0008_19760 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939892|gb|AEA15788.1| HEAT repeat-containing PBS lyase [Bacillus thuringiensis serovar chinensis CT-43] Length = 375 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|300118122|ref|ZP_07055870.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus SJ1] gi|298724433|gb|EFI65127.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus SJ1] Length = 375 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|15924419|ref|NP_371953.1| hypothetical protein SAV1429 [Staphylococcus aureus subsp. aureus Mu50] gi|81774912|sp|Q931R7|CVFC_STAAM RecName: Full=Conserved virulence factor C gi|14247200|dbj|BAB57591.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] Length = 374 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + + +E + +++ SI GI S++ +F+ Sbjct: 4 LRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEETQ-PRFINQLLSIDGITSIFHVMNFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGM 80 V K + DWE + P + Sbjct: 63 VDKAPKADWEVILPDIKAA 81 >gi|327440655|dbj|BAK17020.1| FOG: HEAT repeat [Solibacillus silvestris StLB046] Length = 373 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 1/100 (1%) Query: 5 TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVG 64 E TP+P ++K I Q + + +++ E SP IF + G+ +Y +F+ + Sbjct: 6 IEPTPSPNSMKVIIDQDLPFGKSFNYTKDNIGEASPEMQAIFGVEGVKGIYHVSNFLAIE 65 Query: 65 KDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLD 103 ++ Y WE++ + I N G++ + Sbjct: 66 RNAKYAWENILADIRRAIGGEATESTEYEMNEHYGEVNVH 105 >gi|269940924|emb|CBI49308.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] Length = 374 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + + +E + +++ SI GI S++ +F+ Sbjct: 4 LRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEETQ-PRFINQLLSIDGITSIFHVMNFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGM 80 V K + DWE + P + Sbjct: 63 VDKAPKADWEVILPDIKAA 81 >gi|218233107|ref|YP_002366894.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus B4264] gi|229150427|ref|ZP_04278643.1| hypothetical protein bcere0011_19780 [Bacillus cereus m1550] gi|218161064|gb|ACK61056.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus B4264] gi|228632920|gb|EEK89533.1| hypothetical protein bcere0011_19780 [Bacillus cereus m1550] Length = 375 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|196033826|ref|ZP_03101237.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus W] gi|228945797|ref|ZP_04108143.1| hypothetical protein bthur0007_19530 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195993506|gb|EDX57463.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus W] gi|228813862|gb|EEM60137.1| hypothetical protein bthur0007_19530 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 375 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + + +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKKQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRSV 82 >gi|30262187|ref|NP_844564.1| HEAT repeat-containing PBS lyase [Bacillus anthracis str. Ames] gi|49185028|ref|YP_028280.1| HEAT repeat-containing PBS lyase [Bacillus anthracis str. Sterne] gi|49481614|ref|YP_036317.1| HEAT-like repeat-containing protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|50196932|ref|YP_018814.3| HEAT repeat-containing PBS lyase [Bacillus anthracis str. 'Ames Ancestor'] gi|52143266|ref|YP_083562.1| HEAT-like repeat-containing protein [Bacillus cereus E33L] gi|167632880|ref|ZP_02391206.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. A0442] gi|170686452|ref|ZP_02877673.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. A0465] gi|170708438|ref|ZP_02898881.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. A0389] gi|177650796|ref|ZP_02933693.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. A0174] gi|190567836|ref|ZP_03020747.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis Tsiankovskii-I] gi|227815013|ref|YP_002815022.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. CDC 684] gi|228914783|ref|ZP_04078392.1| hypothetical protein bthur0012_20130 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228933499|ref|ZP_04096352.1| hypothetical protein bthur0009_19650 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229091168|ref|ZP_04222391.1| hypothetical protein bcere0021_19860 [Bacillus cereus Rock3-42] gi|229604723|ref|YP_002866540.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. A0248] gi|254684756|ref|ZP_05148616.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. CNEVA-9066] gi|254721048|ref|ZP_05182839.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. A1055] gi|254737202|ref|ZP_05194906.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. Western North America USA6153] gi|254743613|ref|ZP_05201298.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. Kruger B] gi|254751517|ref|ZP_05203554.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. Vollum] gi|254759032|ref|ZP_05211059.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. Australia 94] gi|301053702|ref|YP_003791913.1| hypothetical protein BACI_c21220 [Bacillus anthracis CI] gi|30256813|gb|AAP26050.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. Ames] gi|49178955|gb|AAT54331.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. Sterne] gi|49333170|gb|AAT63816.1| conserved hypothetical protein, HEAT-like repeat domain [Bacillus thuringiensis serovar konkukian str. 97-27] gi|50082994|gb|AAT31289.3| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. 'Ames Ancestor'] gi|51976735|gb|AAU18285.1| conserved hypothetical protein; HEAT-like repeat domain [Bacillus cereus E33L] gi|167531692|gb|EDR94357.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. A0442] gi|170126677|gb|EDS95561.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. A0389] gi|170669528|gb|EDT20270.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. A0465] gi|172083257|gb|EDT68318.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. A0174] gi|190560891|gb|EDV14865.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis Tsiankovskii-I] gi|227007149|gb|ACP16892.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. CDC 684] gi|228692299|gb|EEL46035.1| hypothetical protein bcere0021_19860 [Bacillus cereus Rock3-42] gi|228826228|gb|EEM72008.1| hypothetical protein bthur0009_19650 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228845102|gb|EEM90144.1| hypothetical protein bthur0012_20130 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229269131|gb|ACQ50768.1| PBS lyase HEAT-like repeat domain protein [Bacillus anthracis str. A0248] gi|300375871|gb|ADK04775.1| conserved hypothetical protein [Bacillus cereus biovar anthracis str. CI] Length = 375 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|218897171|ref|YP_002445582.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus G9842] gi|218543423|gb|ACK95817.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus G9842] Length = 375 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|307721999|ref|YP_003893139.1| nitrogen-fixing NifU domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306980092|gb|ADN10127.1| nitrogen-fixing NifU domain protein [Sulfurimonas autotrophica DSM 16294] Length = 326 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 7/94 (7%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIKEV---LDNRVRPAVARDGGDIVFKGYRDGIV 150 + D G + +VQ+IK V +D VR + DGG++ + Sbjct: 224 DEEKMKAAADAQLEGAGNFEEMTLVQQIKAVDAVIDENVRQFLVMDGGNMEIIDIKKDDD 283 Query: 151 FL----SMRGACSGCPSASETLKYGVANILNHFV 180 ++ GAC+GC S++ Y + + L + Sbjct: 284 YIDIYIRYLGACNGCASSATGTLYAIESTLKEKL 317 >gi|258449243|ref|ZP_05697346.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|257857231|gb|EEV80129.1| conserved hypothetical protein [Staphylococcus aureus A6224] Length = 374 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + + +E + +++ SI GI S++ +F+ Sbjct: 4 LRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEETQ-PRFINQLLSIDGITSIFHVMNFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGM 80 V K + DWE + P + Sbjct: 63 VDKAPKADWEVILPDIKAA 81 >gi|57650385|ref|YP_186313.1| hypothetical protein SACOL1465 [Staphylococcus aureus subsp. aureus COL] gi|88195161|ref|YP_499962.1| hypothetical protein SAOUHSC_01437 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221552|ref|YP_001332374.1| hypothetical protein NWMN_1340 [Staphylococcus aureus subsp. aureus str. Newman] gi|221142066|ref|ZP_03566559.1| hypothetical protein SauraJ_10595 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258451088|ref|ZP_05699123.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|262050398|ref|ZP_06023238.1| hypothetical protein SAD30_2215 [Staphylococcus aureus D30] gi|282927526|ref|ZP_06335143.1| conserved virulence factor C [Staphylococcus aureus A9765] gi|284024429|ref|ZP_06378827.1| hypothetical protein Saura13_07545 [Staphylococcus aureus subsp. aureus 132] gi|304380992|ref|ZP_07363649.1| PBS lyase HEAT family repeat protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81694503|sp|Q5HFZ4|CVFC_STAAC RecName: Full=Conserved virulence factor C gi|123098039|sp|Q2FYK3|CVFC_STAA8 RecName: Full=Conserved virulence factor C gi|57284571|gb|AAW36665.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus COL] gi|87202719|gb|ABD30529.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374352|dbj|BAF67612.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|257861143|gb|EEV83956.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|259161517|gb|EEW46119.1| hypothetical protein SAD30_2215 [Staphylococcus aureus D30] gi|282592066|gb|EFB97092.1| conserved virulence factor C [Staphylococcus aureus A9765] gi|302751259|gb|ADL65436.1| Fe-S cluster assembly protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340468|gb|EFM06405.1| PBS lyase HEAT family repeat protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|329314106|gb|AEB88519.1| Conserved virulence factor C [Staphylococcus aureus subsp. aureus T0131] gi|329730566|gb|EGG66952.1| PBS lyase HEAT-like repeat protein [Staphylococcus aureus subsp. aureus 21189] Length = 374 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + + +E + +++ SI GI S++ +F+ Sbjct: 4 LRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEETQ-PRFINQLLSIDGITSIFHVMNFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGM 80 V K + DWE + P + Sbjct: 63 VDKAPKADWEVILPDIKAA 81 >gi|296271620|ref|YP_003654251.1| Sel1 domain-containing protein repeat-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296095795|gb|ADG91745.1| Sel1 domain protein repeat-containing protein [Arcobacter nitrofigilis DSM 7299] Length = 323 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%) Query: 104 DMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY-RDGIVFLSM--RGACSG 160 ++ +S ++ I + LD +RP + +DGG+I+ Y + + L + +GAC G Sbjct: 235 ELNEHFRAQSMEKQLEIINDTLDRFIRPILLKDGGNILLIDYVNEPEIELRLAYQGACVG 294 Query: 161 CPSASETLKYGVANILNHFV-PEVK 184 C AS + L + P V+ Sbjct: 295 CSIASTGTYEMIKGTLEKVIDPRVR 319 >gi|302333042|gb|ADL23235.1| Fe-S cluster assembly protein [Staphylococcus aureus subsp. aureus JKD6159] Length = 374 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + + +E + +++ SI GI S++ +F+ Sbjct: 4 LRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEETQ-PEFINQLLSIDGITSIFHVMNFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGM 80 V K + DWE + P + Sbjct: 63 VDKAPKADWEVILPDIKAA 81 >gi|228985281|ref|ZP_04145444.1| hypothetical protein bthur0001_19790 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774436|gb|EEM22839.1| hypothetical protein bthur0001_19790 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 375 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRSV 82 >gi|228927253|ref|ZP_04090315.1| hypothetical protein bthur0010_19660 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121739|ref|ZP_04250961.1| hypothetical protein bcere0016_20390 [Bacillus cereus 95/8201] gi|228661714|gb|EEL17332.1| hypothetical protein bcere0016_20390 [Bacillus cereus 95/8201] gi|228832400|gb|EEM77975.1| hypothetical protein bthur0010_19660 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 375 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRSV 82 >gi|228955951|ref|ZP_04117887.1| hypothetical protein bthur0006_52700 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229069733|ref|ZP_04203018.1| hypothetical protein bcere0025_19360 [Bacillus cereus F65185] gi|229079371|ref|ZP_04211913.1| hypothetical protein bcere0023_20260 [Bacillus cereus Rock4-2] gi|229178571|ref|ZP_04305935.1| hypothetical protein bcere0005_19290 [Bacillus cereus 172560W] gi|229190288|ref|ZP_04317289.1| hypothetical protein bcere0002_19560 [Bacillus cereus ATCC 10876] gi|228593072|gb|EEK50890.1| hypothetical protein bcere0002_19560 [Bacillus cereus ATCC 10876] gi|228604729|gb|EEK62186.1| hypothetical protein bcere0005_19290 [Bacillus cereus 172560W] gi|228703904|gb|EEL56348.1| hypothetical protein bcere0023_20260 [Bacillus cereus Rock4-2] gi|228713354|gb|EEL65244.1| hypothetical protein bcere0025_19360 [Bacillus cereus F65185] gi|228803731|gb|EEM50414.1| hypothetical protein bthur0006_52700 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 375 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|206975315|ref|ZP_03236229.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus H3081.97] gi|217959715|ref|YP_002338267.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus AH187] gi|229138906|ref|ZP_04267485.1| hypothetical protein bcere0013_20190 [Bacillus cereus BDRD-ST26] gi|206746736|gb|EDZ58129.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus H3081.97] gi|217063358|gb|ACJ77608.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus AH187] gi|228644531|gb|EEL00784.1| hypothetical protein bcere0013_20190 [Bacillus cereus BDRD-ST26] Length = 375 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|30020290|ref|NP_831921.1| HEAT repeat-containing PBS lyase [Bacillus cereus ATCC 14579] gi|206972129|ref|ZP_03233077.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus AH1134] gi|228958476|ref|ZP_04120196.1| hypothetical protein bthur0005_19820 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228965167|ref|ZP_04126261.1| hypothetical protein bthur0004_20040 [Bacillus thuringiensis serovar sotto str. T04001] gi|229109644|ref|ZP_04239230.1| hypothetical protein bcere0018_19050 [Bacillus cereus Rock1-15] gi|229127600|ref|ZP_04256589.1| hypothetical protein bcere0015_20490 [Bacillus cereus BDRD-Cer4] gi|296502773|ref|YP_003664473.1| HEAT repeat-containing PBS lyase [Bacillus thuringiensis BMB171] gi|29895840|gb|AAP09122.1| PBS lyase HEAT-like repeat [Bacillus cereus ATCC 14579] gi|206733052|gb|EDZ50226.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus AH1134] gi|228655677|gb|EEL11526.1| hypothetical protein bcere0015_20490 [Bacillus cereus BDRD-Cer4] gi|228673685|gb|EEL28943.1| hypothetical protein bcere0018_19050 [Bacillus cereus Rock1-15] gi|228794401|gb|EEM41913.1| hypothetical protein bthur0004_20040 [Bacillus thuringiensis serovar sotto str. T04001] gi|228801103|gb|EEM48000.1| hypothetical protein bthur0005_19820 [Bacillus thuringiensis serovar pakistani str. T13001] gi|296323825|gb|ADH06753.1| HEAT repeat-containing PBS lyase [Bacillus thuringiensis BMB171] Length = 375 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|229043940|ref|ZP_04191635.1| hypothetical protein bcere0027_19820 [Bacillus cereus AH676] gi|228725397|gb|EEL76659.1| hypothetical protein bcere0027_19820 [Bacillus cereus AH676] Length = 375 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|229155773|ref|ZP_04283879.1| hypothetical protein bcere0010_19650 [Bacillus cereus ATCC 4342] gi|228627759|gb|EEK84480.1| hypothetical protein bcere0010_19650 [Bacillus cereus ATCC 4342] Length = 375 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|320140325|gb|EFW32182.1| PBS lyase HEAT-like repeat protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142674|gb|EFW34477.1| PBS lyase HEAT-like repeat protein [Staphylococcus aureus subsp. aureus MRSA177] Length = 374 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + + +E + +++ SI GI S++ +F+ Sbjct: 4 LRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEETQ-PRFINQLLSIDGITSIFHVMNFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGM 80 V K + DWE + P + Sbjct: 63 VDKAPKADWEVILPDIKAA 81 >gi|118477604|ref|YP_894755.1| HEAT repeat-containing protein [Bacillus thuringiensis str. Al Hakam] gi|196046077|ref|ZP_03113305.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus 03BB108] gi|225864155|ref|YP_002749533.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus 03BB102] gi|229184411|ref|ZP_04311618.1| hypothetical protein bcere0004_19740 [Bacillus cereus BGSC 6E1] gi|118416829|gb|ABK85248.1| conserved hypothetical protein [Bacillus thuringiensis str. Al Hakam] gi|196023132|gb|EDX61811.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus 03BB108] gi|225785671|gb|ACO25888.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus 03BB102] gi|228599207|gb|EEK56820.1| hypothetical protein bcere0004_19740 [Bacillus cereus BGSC 6E1] Length = 375 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|82751020|ref|YP_416761.1| hypothetical protein SAB1284c [Staphylococcus aureus RF122] gi|123768558|sp|Q2YY38|CVFC_STAAB RecName: Full=Conserved virulence factor C gi|82656551|emb|CAI80973.1| conserved hypothetical protein [Staphylococcus aureus RF122] Length = 374 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + + +E + +++ SI GI S++ +F+ Sbjct: 4 LRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEETQ-PEFINQLLSIDGITSIFHVMNFLA 62 Query: 63 VGKD-QYDWEHLRPPVLGM 80 V K + DWE + P + Sbjct: 63 VDKSPKADWEVILPDIKAA 81 >gi|229196417|ref|ZP_04323164.1| hypothetical protein bcere0001_19760 [Bacillus cereus m1293] gi|228587054|gb|EEK45125.1| hypothetical protein bcere0001_19760 [Bacillus cereus m1293] Length = 375 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|196039744|ref|ZP_03107048.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus NVH0597-99] gi|196029447|gb|EDX68050.1| PBS lyase HEAT-like repeat domain protein [Bacillus cereus NVH0597-99] Length = 375 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENIEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|324326222|gb|ADY21482.1| HEAT repeat-containing PBS lyase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 375 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|308173979|ref|YP_003920684.1| lyase [Bacillus amyloliquefaciens DSM 7] gi|307606843|emb|CBI43214.1| putative lyase [Bacillus amyloliquefaciens DSM 7] gi|328553095|gb|AEB23587.1| lyase [Bacillus amyloliquefaciens TA208] gi|328912133|gb|AEB63729.1| putative lyase [Bacillus amyloliquefaciens LL3] Length = 377 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 4/83 (4%) Query: 1 MFIQ-TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISP-LASRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + L G + + E +P + I +I G+ VY Sbjct: 1 MKIKSIEPTPSPNTMKVILTEE-LPAGKSNNYKLDQTEGAPAVVRDILNIEGVKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ +DW+ + P V Sbjct: 60 DFLAVERNARFDWKEILPQVRSA 82 >gi|15927010|ref|NP_374543.1| hypothetical protein SA1262 [Staphylococcus aureus subsp. aureus N315] gi|21283048|ref|NP_646136.1| hypothetical protein MW1319 [Staphylococcus aureus subsp. aureus MW2] gi|49486270|ref|YP_043491.1| hypothetical protein SAS1372 [Staphylococcus aureus subsp. aureus MSSA476] gi|148267916|ref|YP_001246859.1| HEAT repeat-containing PBS lyase [Staphylococcus aureus subsp. aureus JH9] gi|150393979|ref|YP_001316654.1| HEAT repeat-containing PBS lyase [Staphylococcus aureus subsp. aureus JH1] gi|156979748|ref|YP_001442007.1| hypothetical protein SAHV_1417 [Staphylococcus aureus subsp. aureus Mu3] gi|253315248|ref|ZP_04838461.1| hypothetical protein SauraC_03617 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732068|ref|ZP_04866233.1| PBS lyase HEAT family repeat protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733324|ref|ZP_04867489.1| PBS lyase HEAT family repeat protein [Staphylococcus aureus subsp. aureus TCH130] gi|255006218|ref|ZP_05144819.2| hypothetical protein SauraM_07105 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795516|ref|ZP_05644495.1| conserved virulence factor C [Staphylococcus aureus A9781] gi|258413325|ref|ZP_05681601.1| conserved virulence factor C [Staphylococcus aureus A9763] gi|258420569|ref|ZP_05683511.1| conserved virulence factor C [Staphylococcus aureus A9719] gi|258434660|ref|ZP_05688734.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258444764|ref|ZP_05693093.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258447402|ref|ZP_05695546.1| PBS lyase HEAT domain-containing protein repeat-containing protein [Staphylococcus aureus A6300] gi|258454621|ref|ZP_05702585.1| PBS lyase HEAT domain-containing protein repeat-containing protein [Staphylococcus aureus A5937] gi|269203051|ref|YP_003282320.1| hypothetical protein SAAV_1412 [Staphylococcus aureus subsp. aureus ED98] gi|282892923|ref|ZP_06301158.1| conserved virulence factor C [Staphylococcus aureus A8117] gi|282927954|ref|ZP_06335563.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|295406373|ref|ZP_06816180.1| virulence factor C [Staphylococcus aureus A8819] gi|296275289|ref|ZP_06857796.1| hypothetical protein SauraMR_03055 [Staphylococcus aureus subsp. aureus MR1] gi|297207913|ref|ZP_06924346.1| PBS lyase HEAT family repeat [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244602|ref|ZP_06928485.1| virulence factor C [Staphylococcus aureus A8796] gi|300911997|ref|ZP_07129440.1| PBS lyase HEAT family repeat protein [Staphylococcus aureus subsp. aureus TCH70] gi|81649314|sp|Q6G9D2|CVFC_STAAS RecName: Full=Conserved virulence factor C gi|81704423|sp|Q7A0W1|CVFC_STAAW RecName: Full=Conserved virulence factor C gi|81781603|sp|Q99U59|CVFC_STAAN RecName: Full=Conserved virulence factor C gi|13701227|dbj|BAB42522.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|21204487|dbj|BAB95184.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49244713|emb|CAG43148.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|147740985|gb|ABQ49283.1| PBS lyase HEAT domain protein repeat-containing protein [Staphylococcus aureus subsp. aureus JH9] gi|149946431|gb|ABR52367.1| PBS lyase HEAT domain protein repeat-containing protein [Staphylococcus aureus subsp. aureus JH1] gi|156721883|dbj|BAF78300.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253724201|gb|EES92930.1| PBS lyase HEAT family repeat protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728676|gb|EES97405.1| PBS lyase HEAT family repeat protein [Staphylococcus aureus subsp. aureus TCH130] gi|257789488|gb|EEV27828.1| conserved virulence factor C [Staphylococcus aureus A9781] gi|257839889|gb|EEV64357.1| conserved virulence factor C [Staphylococcus aureus A9763] gi|257843517|gb|EEV67924.1| conserved virulence factor C [Staphylococcus aureus A9719] gi|257849021|gb|EEV73003.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257850257|gb|EEV74210.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257853593|gb|EEV76552.1| PBS lyase HEAT domain-containing protein repeat-containing protein [Staphylococcus aureus A6300] gi|257863004|gb|EEV85768.1| PBS lyase HEAT domain-containing protein repeat-containing protein [Staphylococcus aureus A5937] gi|262075341|gb|ACY11314.1| hypothetical protein SAAV_1412 [Staphylococcus aureus subsp. aureus ED98] gi|282590251|gb|EFB95331.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|282764920|gb|EFC05045.1| conserved virulence factor C [Staphylococcus aureus A8117] gi|285817107|gb|ADC37594.1| PBS lyase HEAT-like repeat domain protein [Staphylococcus aureus 04-02981] gi|294968961|gb|EFG44983.1| virulence factor C [Staphylococcus aureus A8819] gi|296887487|gb|EFH26387.1| PBS lyase HEAT family repeat [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178632|gb|EFH37878.1| virulence factor C [Staphylococcus aureus A8796] gi|300886243|gb|EFK81445.1| PBS lyase HEAT family repeat protein [Staphylococcus aureus subsp. aureus TCH70] gi|312829823|emb|CBX34665.1| PBS lyase HEAT-like repeat family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129139|gb|EFT85134.1| hypothetical protein CGSSa03_06846 [Staphylococcus aureus subsp. aureus CGS03] gi|329727108|gb|EGG63564.1| PBS lyase HEAT-like repeat protein [Staphylococcus aureus subsp. aureus 21172] gi|329733412|gb|EGG69744.1| PBS lyase HEAT-like repeat protein [Staphylococcus aureus subsp. aureus 21193] Length = 374 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + + +E + +++ SI GI S++ +F+ Sbjct: 4 LRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEETQ-PRFINQLLSIDGITSIFHVMNFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGM 80 V K + DWE + P + Sbjct: 63 VDKAPKADWEVILPDIKAA 81 >gi|87161495|ref|YP_494019.1| hypothetical protein SAUSA300_1322 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161509596|ref|YP_001575255.1| hypothetical protein USA300HOU_1366 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294850753|ref|ZP_06791471.1| hypothetical protein SKAG_02851 [Staphylococcus aureus A9754] gi|123735984|sp|Q2FH09|CVFC_STAA3 RecName: Full=Conserved virulence factor C gi|87127469|gb|ABD21983.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160368405|gb|ABX29376.1| hypothetical protein USA300HOU_1366 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294822393|gb|EFG38844.1| hypothetical protein SKAG_02851 [Staphylococcus aureus A9754] Length = 374 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + + +E + +++ SI GI S++ +F+ Sbjct: 4 LRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEETQ-PRFINQLLSIDGITSIFHVMNFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGM 80 V K + DWE + P + Sbjct: 63 VDKAPKADWEVILPDIKAA 81 >gi|229144799|ref|ZP_04273196.1| hypothetical protein bcere0012_19590 [Bacillus cereus BDRD-ST24] gi|228638521|gb|EEK94954.1| hypothetical protein bcere0012_19590 [Bacillus cereus BDRD-ST24] Length = 375 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPIQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|228997277|ref|ZP_04156900.1| hypothetical protein bmyco0003_18590 [Bacillus mycoides Rock3-17] gi|229004901|ref|ZP_04162629.1| hypothetical protein bmyco0002_18460 [Bacillus mycoides Rock1-4] gi|228756345|gb|EEM05662.1| hypothetical protein bmyco0002_18460 [Bacillus mycoides Rock1-4] gi|228762472|gb|EEM11396.1| hypothetical protein bmyco0003_18590 [Bacillus mycoides Rock3-17] Length = 375 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASR-IFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + AE +P + I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENAEQAPEQVQHILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|228991182|ref|ZP_04151141.1| hypothetical protein bpmyx0001_19410 [Bacillus pseudomycoides DSM 12442] gi|228768595|gb|EEM17199.1| hypothetical protein bpmyx0001_19410 [Bacillus pseudomycoides DSM 12442] Length = 375 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASR-IFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + AE +P + I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENAEQAPEQVQHILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|313682130|ref|YP_004059868.1| nitrogen-fixing nifu domain protein [Sulfuricurvum kujiense DSM 16994] gi|313154990|gb|ADR33668.1| nitrogen-fixing NifU domain protein [Sulfuricurvum kujiense DSM 16994] Length = 347 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 40/101 (39%), Gaps = 5/101 (4%) Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSGDFIE-SDSAVVQRIKEVLDNRVRPAVARDGGD 139 +++ + + + G G+F S ++ I+ +L+ +RP + D GD Sbjct: 234 LVDMLSEITAELQKEAISKKIKEAKGDGNFNAMSLVQKLRSIESILEEYIRPTLKADHGD 293 Query: 140 IVFKGY----RDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + +++ +G C C + T G+ ++L Sbjct: 294 VEVIDLKETEEGHELYIQYKGECMSCSMNTTTTLAGMQDML 334 >gi|57864874|gb|AAW57048.1| nitrogen fixation protein U [cyanobacterium endosymbiont of Rhopalodia gibba] Length = 110 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I+++L V+PA A+DGGD+ ++++GACS S++ TL+ + + L + Sbjct: 48 IQKILKEEVKPAPAQDGGDVDLFN------KVTLKGACSSFMSSAATLENAIKSRLRDCI 101 Query: 181 -PEVKDIRTV 189 PE+ + +V Sbjct: 102 SPELI-VISV 110 >gi|239927180|ref|ZP_04684133.1| hypothetical protein SghaA1_03048 [Streptomyces ghanaensis ATCC 14672] Length = 93 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 10/69 (14%) Query: 127 NRVRPAVARDGGDIVFKGYRDGIVFLSMRG-AC-SGCPSASETLKYGVANILNHFV---- 180 R+RPA+ GGD G + + +R C SGC SAS G+ + V Sbjct: 2 ERLRPALRERGGDAELTGVEGRVARVRLRTPGCGSGCGSAST----GIEEAVREAVLAVA 57 Query: 181 PEVKDIRTV 189 PE+ + V Sbjct: 58 PELTAVEPV 66 >gi|29840661|ref|NP_829767.1| nifU protein, putative [Chlamydophila caviae GPIC] gi|29835011|gb|AAP05645.1| nifU protein, putative [Chlamydophila caviae GPIC] Length = 273 Score = 53.3 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 2/93 (2%) Query: 90 PIIHNGGLGDMKLDDMGSGDFIESDS--AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD 147 P+ + +++ + + + E+ S + +Q ++ ++++ P VA DGG ++ + Sbjct: 156 PLKESFLPSEIEDANPYTKEAWEALSIESRLQVLRTTAEDKISPYVAMDGGSVLIENLEG 215 Query: 148 GIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IV ++ G CSGC SA + + +L +V Sbjct: 216 NIVTIAYAGNCSGCFSAIGSTLNSIGQLLRAYV 248 >gi|329937296|ref|ZP_08286895.1| hypothetical protein SGM_2387 [Streptomyces griseoaurantiacus M045] gi|329303577|gb|EGG47463.1| hypothetical protein SGM_2387 [Streptomyces griseoaurantiacus M045] Length = 191 Score = 53.3 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 3/75 (4%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 V +R + +D +R V GG+I G DG+ + + GC S + L+ V Sbjct: 94 DPVERRAERAVDG-LRTVVRESGGEIELTGIDDGVARVRLD--VRGCGSTTAGLESAVRE 150 Query: 175 ILNHFVPEVKDIRTV 189 L PE+ + V Sbjct: 151 ALLAAAPELSGVERV 165 >gi|89897915|ref|YP_515025.1| NifU-related protein [Chlamydophila felis Fe/C-56] gi|89331287|dbj|BAE80880.1| NifU-related protein [Chlamydophila felis Fe/C-56] Length = 273 Score = 53.3 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 2/93 (2%) Query: 90 PIIHNGGLGDMKLDDMGSGDFIE--SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD 147 P+ + +++ + + + E S + + ++ + + +V P A DGG + + + Sbjct: 156 PLKESFLPSEIEDANPYTQEAWEALSLESRLHALRTIAEEKVSPYTALDGGSVFIESLEE 215 Query: 148 GIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IV +S G CSGC SA + + +L +V Sbjct: 216 NIVTISYAGNCSGCFSAIGSTLNSIGQLLRAYV 248 >gi|311030407|ref|ZP_07708497.1| PBS lyase HEAT domain protein repeat-containing protein [Bacillus sp. m3-13] Length = 373 Score = 53.3 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%) Query: 1 MFIQ-TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISP-LASRIFSIPGIASVYFGY 58 M IQ E TP+P T+K I + L G+ + ++ +P + I I G+ VY Sbjct: 1 MNIQSIEPTPSPNTMKVILSEE-LPAGSRNNYTKDNSDQAPEIIQDILGIEGVKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ +DW+ + V Sbjct: 60 DFLAVERNARFDWKVILSEVRAA 82 >gi|297584373|ref|YP_003700153.1| PBS lyase HEAT domain-containing protein repeat-containing protein [Bacillus selenitireducens MLS10] gi|297142830|gb|ADH99587.1| PBS lyase HEAT domain protein repeat-containing protein [Bacillus selenitireducens MLS10] Length = 375 Score = 53.3 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 19/138 (13%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+T E TP+P T+K I + L G + + E +P + I +I G+ VY Sbjct: 1 MKIKTIEPTPSPNTMKVILNES-LPSGTANNYKSDEKNKAPEPITSILAIEGVTGVYHVA 59 Query: 59 DFITVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAV 117 DF+ + + + DW+ + V + D D+ E V Sbjct: 60 DFLAIERHPKTDWKTILASVRMV---------------FGDDSDADEGNGHQIDEHFGEV 104 Query: 118 VQRIKEVLDNRVRPAVAR 135 +++E ++ + Sbjct: 105 TVQVQEFKGIPMQVKIQS 122 >gi|172058305|ref|YP_001814765.1| hypothetical protein Exig_2297 [Exiguobacterium sibiricum 255-15] gi|171990826|gb|ACB61748.1| conserved hypothetical protein [Exiguobacterium sibiricum 255-15] Length = 79 Score = 53.3 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Query: 4 QTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITV 63 Q + TPNP ++K + E + L + + +I GI +++ DF+TV Sbjct: 2 QVDYTPNPNSVKITLDGDRFGAKSTSVKKGDTPEDA-LLASLITIDGIDNLFAYGDFVTV 60 Query: 64 GKD-QYDWEHLRPPVLG 79 K+ +W L P + Sbjct: 61 TKEADAEWNVLLPTIEE 77 >gi|224373589|ref|YP_002607961.1| NifU family protein [Nautilia profundicola AmH] gi|223589114|gb|ACM92850.1| NifU family protein [Nautilia profundicola AmH] Length = 88 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 4/67 (5%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI----VFLSMRGACSGCPSASETLKYG 171 ++ I++V+ + P +A DGG R+ VF+ GAC+ C SA + Sbjct: 10 EKIEAIEKVIAKDILPMLAFDGGMAEVLDVRESNGETHVFIRYGGACASCSSAGGATLFA 69 Query: 172 VANILNH 178 + L Sbjct: 70 IEETLRR 76 >gi|229085150|ref|ZP_04217397.1| hypothetical protein bcere0022_17700 [Bacillus cereus Rock3-44] gi|228698131|gb|EEL50869.1| hypothetical protein bcere0022_17700 [Bacillus cereus Rock3-44] Length = 375 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P +I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENTEQAPEQVQQILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|229172900|ref|ZP_04300454.1| hypothetical protein bcere0006_20080 [Bacillus cereus MM3] gi|228610645|gb|EEK67913.1| hypothetical protein bcere0006_20080 [Bacillus cereus MM3] Length = 375 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ +DW+ L V + Sbjct: 60 DFLAVERNAKFDWKVLLQQVRSV 82 >gi|329943243|ref|ZP_08292017.1| nifU-like domain protein [Chlamydophila psittaci Cal10] gi|332287822|ref|YP_004422723.1| putative NifU-related protein [Chlamydophila psittaci 6BC] gi|313848394|emb|CBY17398.1| putative NifU-related protein [Chlamydophila psittaci RD1] gi|325506999|gb|ADZ18637.1| putative NifU-related protein [Chlamydophila psittaci 6BC] gi|328814790|gb|EGF84780.1| nifU-like domain protein [Chlamydophila psittaci Cal10] gi|328915082|gb|AEB55915.1| NifU-like protein [Chlamydophila psittaci 6BC] Length = 273 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 33/59 (55%) Query: 122 KEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 + + ++++ P VA DGG ++ + + +V ++ G CSGC SA + + +L +V Sbjct: 190 RTITEDKISPYVALDGGSVLIEKLEENVVTIAYAGNCSGCFSAIGSTLNSIGQLLRAYV 248 >gi|163939978|ref|YP_001644862.1| HEAT repeat-containing PBS lyase [Bacillus weihenstephanensis KBAB4] gi|163862175|gb|ABY43234.1| PBS lyase HEAT domain protein repeat-containing protein [Bacillus weihenstephanensis KBAB4] Length = 375 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPVQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|229133019|ref|ZP_04261860.1| hypothetical protein bcere0014_19450 [Bacillus cereus BDRD-ST196] gi|228650437|gb|EEL06431.1| hypothetical protein bcere0014_19450 [Bacillus cereus BDRD-ST196] Length = 375 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPVQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|319651240|ref|ZP_08005370.1| YpgR protein [Bacillus sp. 2_A_57_CT2] gi|317397020|gb|EFV77728.1| YpgR protein [Bacillus sp. 2_A_57_CT2] Length = 377 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 15/124 (12%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 M I+ E TP+P T+K I + + + A ++ K+ + I I GI VY D Sbjct: 1 MRIKAIEPTPSPNTMKVILDEELPMGKANNYKKEKKEGAPKIILDILEIEGIKGVYHVAD 60 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+ V ++ YDW+ L P V G+ + + G D G + +V Sbjct: 61 FLAVERNAKYDWKELLPQVRSA------FGEDVENEG-------TDNGIDEHFGEVQVLV 107 Query: 119 QRIK 122 Q K Sbjct: 108 QMYK 111 >gi|251798976|ref|YP_003013707.1| PBS lyase HEAT domain protein repeat-containing protein [Paenibacillus sp. JDR-2] gi|247546602|gb|ACT03621.1| PBS lyase HEAT domain protein repeat-containing protein [Paenibacillus sp. JDR-2] Length = 382 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 3/83 (3%) Query: 2 FIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGYDF 60 I E TP+P ++K + L G KE E +P + +I G+ S++ DF Sbjct: 3 LISIEPTPSPNSMK-LNVDESLPRGIRQSYTKKEIESAPEPLKALLAIEGVRSIFRTADF 61 Query: 61 ITVGK-DQYDWEHLRPPVLGMIM 82 I + + DW + ++ Sbjct: 62 IALDRVASADWARILADARTLLQ 84 >gi|229161174|ref|ZP_04289161.1| hypothetical protein bcere0009_19630 [Bacillus cereus R309803] gi|228622270|gb|EEK79109.1| hypothetical protein bcere0009_19630 [Bacillus cereus R309803] Length = 375 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ +DW+ L V + Sbjct: 60 DFLAVERNAKFDWKVLLQQVRAV 82 >gi|229011478|ref|ZP_04168666.1| hypothetical protein bmyco0001_19280 [Bacillus mycoides DSM 2048] gi|229167043|ref|ZP_04294787.1| hypothetical protein bcere0007_20090 [Bacillus cereus AH621] gi|228616396|gb|EEK73477.1| hypothetical protein bcere0007_20090 [Bacillus cereus AH621] gi|228749769|gb|EEL99606.1| hypothetical protein bmyco0001_19280 [Bacillus mycoides DSM 2048] Length = 375 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPVQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|229059873|ref|ZP_04197248.1| hypothetical protein bcere0026_19810 [Bacillus cereus AH603] gi|228719418|gb|EEL71021.1| hypothetical protein bcere0026_19810 [Bacillus cereus AH603] Length = 375 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPVQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|229074890|ref|ZP_04207899.1| hypothetical protein bcere0024_19250 [Bacillus cereus Rock4-18] gi|229096707|ref|ZP_04227678.1| hypothetical protein bcere0020_19540 [Bacillus cereus Rock3-29] gi|229115684|ref|ZP_04245089.1| hypothetical protein bcere0017_19770 [Bacillus cereus Rock1-3] gi|228667826|gb|EEL23263.1| hypothetical protein bcere0017_19770 [Bacillus cereus Rock1-3] gi|228686913|gb|EEL40820.1| hypothetical protein bcere0020_19540 [Bacillus cereus Rock3-29] gi|228708227|gb|EEL60391.1| hypothetical protein bcere0024_19250 [Bacillus cereus Rock4-18] Length = 375 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPVQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|62185476|ref|YP_220261.1| putative NifU-related protein [Chlamydophila abortus S26/3] gi|62148543|emb|CAH64314.1| putative NifU-related protein [Chlamydophila abortus S26/3] Length = 273 Score = 52.5 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 47/93 (50%), Gaps = 2/93 (2%) Query: 90 PIIHNGGLGDMKLDDMGSGDFIESDS--AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD 147 P+ + +++ + + + E+ S + + ++ + ++++ P VA DGG ++ + Sbjct: 156 PLKESFLPSEIEDANPYTQEAWEALSVESRLHALRTITEDKISPYVALDGGSVLIEKLEG 215 Query: 148 GIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 IV ++ G CSGC SA + + +L +V Sbjct: 216 NIVTIAYAGNCSGCFSAIGSTLNSIGQLLRAYV 248 >gi|253577408|ref|ZP_04854724.1| HEAT repeat-containing PBS lyase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843208|gb|EES71240.1| HEAT repeat-containing PBS lyase [Paenibacillus sp. oral taxon 786 str. D14] Length = 248 Score = 52.5 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASR-IFSIPGIASVYFGYD 59 +FI E TP+P T+K + L G +P R + IPG+ SV+ D Sbjct: 4 VFI--EPTPSPNTMKLHLDES-LEPGIRKTYTLNNERSAPAWIRGLLQIPGVKSVFHTAD 60 Query: 60 FITVG-KDQYDWEHLRPPV 77 F+ + K DW + V Sbjct: 61 FVALDRKGNADWAAILSEV 79 >gi|329928571|ref|ZP_08282438.1| PBS lyase HEAT-like repeat protein [Paenibacillus sp. HGF5] gi|328937687|gb|EGG34096.1| PBS lyase HEAT-like repeat protein [Paenibacillus sp. HGF5] Length = 376 Score = 52.5 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 10/124 (8%) Query: 2 FIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAK-EAEISPLASRIFSIPGIASVYFGYDF 60 FI E TP+P ++ + L G E P ++ IPG+ SV+ DF Sbjct: 5 FI--EPTPSPNSMMLHLDET-LESGIRRTYTLDNERSAPPWIRQLLHIPGVKSVFHTLDF 61 Query: 61 ITVG-KDQYDWEHLRPPVLGMIMEHF-ISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 I + K DW P +LG + E F G G D+ + + + Sbjct: 62 IALDRKGNADW----PSILGAVQEIFGQEGLAAGLKEGADDIAFGEAQVFVQYFRNIPMQ 117 Query: 119 QRIK 122 R+K Sbjct: 118 IRVK 121 >gi|283470643|emb|CAQ49854.1| conserved virulence factor C [Staphylococcus aureus subsp. aureus ST398] Length = 374 Score = 52.5 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + + +E + +++ SI GI S++ +F+ Sbjct: 4 LRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEENQ-PRFINQLLSIDGITSIFHVMNFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGM 80 V K + DWE + P + + Sbjct: 63 VDKAPKADWEVILPDIKAV 81 >gi|322370156|ref|ZP_08044718.1| nitrogen-fixing NifU domain protein [Haladaptatus paucihalophilus DX253] gi|320550492|gb|EFW92144.1| nitrogen-fixing NifU domain protein [Haladaptatus paucihalophilus DX253] Length = 128 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 4/85 (4%) Query: 104 DMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFK--GYRDGIVFLSMRGACSGC 161 + + D ES + R++ L ++ P + GG + G V + + GAC GC Sbjct: 3 ENSTTDAAESADDLTSRVERWLTAQM-PIIQMHGGTSAVRKADPESGEVVIELGGACGGC 61 Query: 162 PSASETLKYGVANILNHFVPEVKDI 186 T + + L EV D+ Sbjct: 62 SITPITSQN-IEVELLKKFDEVDDV 85 >gi|297620543|ref|YP_003708680.1| putative nitrogen fixation related protein nifU [Waddlia chondrophila WSU 86-1044] gi|297375844|gb|ADI37674.1| putative nitrogen fixation related protein nifU [Waddlia chondrophila WSU 86-1044] Length = 258 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 I++VL++ +RP +A DGG + K ++ + ++ +G C+ C SA + + V Sbjct: 187 IEQVLNDEIRPYIALDGGGVEVKELKENELVIAYQGNCTSCFSAVGATLSYIQQTVQARV 246 Query: 181 -PEVK 184 P+++ Sbjct: 247 HPDLR 251 >gi|261409346|ref|YP_003245587.1| HEAT domain-containing protein [Paenibacillus sp. Y412MC10] gi|261285809|gb|ACX67780.1| HEAT domain containing protein [Paenibacillus sp. Y412MC10] Length = 376 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 10/124 (8%) Query: 2 FIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAK-EAEISPLASRIFSIPGIASVYFGYDF 60 FI E TP+P ++ + L G E P ++ IPG+ SV+ DF Sbjct: 5 FI--EPTPSPNSMMLHLDET-LESGIRRTYTLDNERSAPPWIRQLLHIPGVKSVFHTLDF 61 Query: 61 ITVG-KDQYDWEHLRPPVLGMIMEHF-ISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 I + K DW P +LG + E F G G D+ + + + Sbjct: 62 IALDRKGNADW----PSILGAVQEIFGQEGLAAGLKEGADDIAFGEAQVFVQYFRNIPMQ 117 Query: 119 QRIK 122 R+K Sbjct: 118 IRVK 121 >gi|46445797|ref|YP_007162.1| putative iron-sulfur cluster assembly protein nifU [Candidatus Protochlamydia amoebophila UWE25] gi|46399438|emb|CAF22887.1| putative iron-sulfur cluster assembly protein nifU [Candidatus Protochlamydia amoebophila UWE25] Length = 263 Score = 52.1 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 118 VQRIKEVLDNRVRPAVARD-GGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 + I+EVLD VRP + D GG +V D + ++ +G+C+ C SA+ T + I+ Sbjct: 184 INLIEEVLDRDVRPYIELDAGGVVVLDLVNDWELHIAYQGSCTSCFSATGTTLSYIQQII 243 Query: 177 N 177 Sbjct: 244 R 244 >gi|73662618|ref|YP_301399.1| hypothetical protein SSP1309 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495133|dbj|BAE18454.1| hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 85 Score = 52.1 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 8/81 (9%) Query: 7 DTPNPATLKF---IPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITV 63 TPNP T+K + G+ + + I I GI S++ +FI+V Sbjct: 8 QTPNPNTMKIVLQLSGEDYKPNTFTAVKD----NQPEFINDILQIEGIKSIFQAMNFISV 63 Query: 64 G-KDQYDWEHLRPPVLGMIME 83 K Y+WE L P V + E Sbjct: 64 DKKADYEWETLLPEVTKTLKE 84 >gi|315195865|gb|EFU26233.1| hypothetical protein CGSSa01_11887 [Staphylococcus aureus subsp. aureus CGS01] Length = 145 Score = 52.1 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + + +E + +++ SI GI S++ +F+ Sbjct: 4 LRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEETQ-PRFINQLLSIDGITSIFHVMNFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGM 80 V K + DWE + P + Sbjct: 63 VDKAPKADWEVILPDIKAA 81 >gi|185535603|gb|ACC77868.1| nitrogen-fixing NifU-like protein [Staphylococcus xylosus] Length = 85 Score = 52.1 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 8/85 (9%) Query: 3 IQTEDTPNPATLKF---IPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 ++ TPNP T+K + G+ + + + I + GI S++ + Sbjct: 4 VEVSQTPNPNTMKIVLQLSGEDYKPNTYTSVKD----DQPDFINAILELEGIKSIFQAMN 59 Query: 60 FITVGKD-QYDWEHLRPPVLGMIME 83 FI+V K+ +W+ L P V + Sbjct: 60 FISVDKNSDSNWDDLLPRVTETLEH 84 >gi|310643989|ref|YP_003948747.1| pbs lyase heat domain protein repeat-containing protein [Paenibacillus polymyxa SC2] gi|309248939|gb|ADO58506.1| PBS lyase HEAT domain protein repeat-containing protein [Paenibacillus polymyxa SC2] Length = 400 Score = 51.7 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 1/108 (0%) Query: 5 TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVG 64 E TP+P T+ + + ++ E P R+ +I G+ SV+ DF+ + Sbjct: 29 IEPTPSPNTMMLHLDERLEAGIRRTYTRDNERSAPPFIRRMLAIEGVKSVFHTTDFVALD 88 Query: 65 -KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI 111 K DW + V + E + + G+ + F Sbjct: 89 RKGNADWSTILGQVRDQLGEEGADANWDLPEETSGEAFGEAQVFVQFF 136 >gi|89101041|ref|ZP_01173882.1| YpgR [Bacillus sp. NRRL B-14911] gi|89084243|gb|EAR63403.1| YpgR [Bacillus sp. NRRL B-14911] Length = 424 Score = 51.3 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Query: 5 TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVG 64 E TP+P T+K I + + + + ++ K + I I GI VY DF+ V Sbjct: 54 IEPTPSPNTMKIILDEELPMGKSNNYKKDKTDGAPKVVLDILQIEGIKGVYHVADFLAVE 113 Query: 65 KDQ-YDWEHLRPPVLGM 80 ++ +DW+ L P V Sbjct: 114 RNAKFDWKELLPQVRKA 130 >gi|313127505|ref|YP_004037775.1| thioredoxin-like protein [Halogeometricum borinquense DSM 11551] gi|312293870|gb|ADQ68330.1| thioredoxin-like protein [Halogeometricum borinquense DSM 11551] Length = 110 Score = 51.3 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 4/80 (5%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFK--GYRDGIVFLSMRGACSGCPSASET 167 + ++ +RI++ + ++ P + GGD V + G V + + GAC+GC ++ T Sbjct: 1 MSDDGDSLKRRIEDWMVGQM-PIIQMHGGDSVVRKADPETGEVVVELGGACAGCGISNIT 59 Query: 168 LKYGVANILNHFVPEVKDIR 187 + L +V D++ Sbjct: 60 ANN-IKADLIMDFDDVTDVQ 78 >gi|229102807|ref|ZP_04233503.1| hypothetical protein bcere0019_19610 [Bacillus cereus Rock3-28] gi|228680592|gb|EEL34773.1| hypothetical protein bcere0019_19610 [Bacillus cereus Rock3-28] Length = 375 Score = 51.3 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLSSGARNNYTNENKEQAPVQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|270627053|ref|ZP_06221965.1| conserved hypothetical protein [Haemophilus influenzae HK1212] gi|270317596|gb|EFA29038.1| conserved hypothetical protein [Haemophilus influenzae HK1212] Length = 50 Score = 51.3 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 152 LSMRGACSGCPSASETLKYGVANILNHFVP-EVKDIRTV 189 L G C+GC TLK GV L P E+K + V Sbjct: 1 LQFGGGCNGCSMVDVTLKDGVEKQLISLFPNELKGAKDV 39 >gi|295400371|ref|ZP_06810350.1| PBS lyase HEAT domain protein repeat-containing protein [Geobacillus thermoglucosidasius C56-YS93] gi|312111102|ref|YP_003989418.1| PBS lyase HEAT domain protein repeat-containing protein [Geobacillus sp. Y4.1MC1] gi|294977646|gb|EFG53245.1| PBS lyase HEAT domain protein repeat-containing protein [Geobacillus thermoglucosidasius C56-YS93] gi|311216203|gb|ADP74807.1| PBS lyase HEAT domain protein repeat-containing protein [Geobacillus sp. Y4.1MC1] Length = 378 Score = 50.9 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%) Query: 5 TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEIS-PLASRIFSIPGIASVYFGYDFITV 63 E TP+P T+K + + L G H + + PL ++ I G+ +Y DF+ V Sbjct: 7 IEPTPSPNTMKVLLDEE-LPFGTSHNYKRDNVDTAPPLIQQLMKIEGVKGIYHVADFLAV 65 Query: 64 GKD-QYDWEHL 73 ++ +YDW+ + Sbjct: 66 ERNPKYDWKEI 76 >gi|65319472|ref|ZP_00392431.1| COG1413: FOG: HEAT repeat [Bacillus anthracis str. A2012] Length = 375 Score = 50.9 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I+ TP+P T+K I + VL GA + + E +P+ I I GI VY Sbjct: 1 MKIKAIXPTPSPNTMKVILNE-VLPSGARNNYTNENKEQAPMQVQEILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRAV 82 >gi|149179661|ref|ZP_01858166.1| YpgR [Bacillus sp. SG-1] gi|148851853|gb|EDL65998.1| YpgR [Bacillus sp. SG-1] Length = 374 Score = 50.9 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 58/160 (36%), Gaps = 15/160 (9%) Query: 1 MFIQ-TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYD 59 M I+ E TP+P T+K I + + + ++ I I GI VY D Sbjct: 1 MRIKSIEPTPSPNTMKIILDEEMAGGKSNNYKKEDADTAPKRIKDILEIEGIKGVYHVAD 60 Query: 60 FITVGKDQ-YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVV 118 F+ V ++ +DW+ L P V G+ G + ++ + Sbjct: 61 FLAVERNAKFDWQELLPRVRKA------FGEDAEVEGMATEADEHFGEVAVSVQEFKGIP 114 Query: 119 QRIKEVLDNRVRPAVARDG-----GDIVFKGYRDGIVFLS 153 ++K ++ + D G+ +G D +V L Sbjct: 115 MQVKLTTESEEKRFSLPDRFVKAVGEAQMEG--DNVVLLR 152 >gi|315649502|ref|ZP_07902587.1| HEAT domain containing protein [Paenibacillus vortex V453] gi|315274975|gb|EFU38350.1| HEAT domain containing protein [Paenibacillus vortex V453] Length = 376 Score = 50.9 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 8/123 (6%) Query: 2 FIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 FI E TP+P ++ + + ++ E P ++ IPG+ SV+ DFI Sbjct: 5 FI--EPTPSPNSMMLHLDETLEAGIRRTYTVDNERSAPPWIKQLLHIPGVKSVFHTLDFI 62 Query: 62 TVG-KDQYDWEHLRPPVLGMIMEHF-ISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQ 119 + K DW P +LG + E F G D + + + Sbjct: 63 ALDRKGNADW----PSILGAVQEIFGQEGLAAGLKEADEDFAFGEAQVFVQYFRNIPMQI 118 Query: 120 RIK 122 R+K Sbjct: 119 RVK 121 >gi|86740647|ref|YP_481047.1| nitrogen-fixing NifU-like protein [Frankia sp. CcI3] gi|86567509|gb|ABD11318.1| nitrogen-fixing NifU-like [Frankia sp. CcI3] Length = 191 Score = 50.9 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 6/104 (5%) Query: 85 FISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG 144 + SG P + GD +L D V R+ ++ ++RPAV GG+I G Sbjct: 63 YASGAPEVLAAFTGD-ELLDHLLVLHDVHPEPVGARVARAIE-QLRPAVRDRGGEIELSG 120 Query: 145 YRDGIVFLSM-RGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 G+ + + G C SA T V + PE+ D+R Sbjct: 121 IERGVAEVRLTLGGCGST-SAGVT--EAVRQAVLAVAPELSDVR 161 >gi|313125145|ref|YP_004035409.1| thioredoxin-like protein [Halogeometricum borinquense DSM 11551] gi|312291510|gb|ADQ65970.1| thioredoxin-like protein [Halogeometricum borinquense DSM 11551] Length = 108 Score = 50.6 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 9/78 (11%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGV 172 ++ +R + L N V P + GG + + G V +++ GACSGC A T+ Sbjct: 4 ESLERRTRNYLSNNV-PQIQEHGGHFEIEDVDNETGEVTVAIGGACSGCGIAPMTM---- 58 Query: 173 ANILNHFVP-EVKDIRTV 189 + H +P EV DI V Sbjct: 59 -RAIRHRLPDEVDDISKV 75 >gi|308070761|ref|YP_003872366.1| hypothetical protein PPE_04048 [Paenibacillus polymyxa E681] gi|305860040|gb|ADM71828.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 377 Score = 50.6 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 1/108 (0%) Query: 5 TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVG 64 E TP+P T+ + + ++ E P R+ I G+ SV+ DF+ + Sbjct: 6 IEPTPSPNTMMLHLDERLEAGIRRTYTRDNERSAPPFIRRMLGIEGVKSVFQTTDFVALD 65 Query: 65 -KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFI 111 K DW + V + E + + G+ + F Sbjct: 66 RKGNADWSTILGQVRDQLGEEGADANWDLPEETSGEAFGEAQVFVQFF 113 >gi|228475947|ref|ZP_04060655.1| conserved virulence factor C [Staphylococcus hominis SK119] gi|228269770|gb|EEK11250.1| conserved virulence factor C [Staphylococcus hominis SK119] Length = 371 Score = 50.6 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + ++ K ++ + + I + S++ DF+ Sbjct: 4 LKIEPTPSPNTMKIVLSEKRADNQSNTYTEVKTSQPD-FINDLLQIKDVKSIFHVIDFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGMIME 83 + K + +WE + P + + + Sbjct: 63 IDKYPKANWEEVLPQITASLQK 84 >gi|314936428|ref|ZP_07843775.1| conserved hypothetical protein [Staphylococcus hominis subsp. hominis C80] gi|313655047|gb|EFS18792.1| conserved hypothetical protein [Staphylococcus hominis subsp. hominis C80] Length = 371 Score = 50.6 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 ++ E TP+P T+K + + + ++ K ++ + + I + S++ DF+ Sbjct: 4 LKIEPTPSPNTMKIVLSEKRADNQSNTYTEVKTSQPD-FINDLLQIKDVKSIFHVIDFLA 62 Query: 63 VGK-DQYDWEHLRPPVLGMIME 83 + K + +WE + P + + + Sbjct: 63 IDKYPKANWEEVLPQITASLQK 84 >gi|327398552|ref|YP_004339421.1| nitrogen-fixing NifU domain-containing protein [Hippea maritima DSM 10411] gi|327181181|gb|AEA33362.1| nitrogen-fixing NifU domain protein [Hippea maritima DSM 10411] Length = 322 Score = 50.6 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 9/104 (8%) Query: 92 IHNGGLGDMKLDDMGSGDFIE-SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY----- 145 +++ + + + +F E + ++ I+ VL + +A DGG + Sbjct: 219 VNDKMKEEELIKKAETSNFDEMTLLNKIKNIERVLREDISSILAMDGGSVELVDVREKEN 278 Query: 146 RDGIVFLSMRGACSGCPSASETLKYGVANILNHFV--PEVKDIR 187 + V + G CS C +A+ T+ + LN + ++K ++ Sbjct: 279 EEVKVLIKYLGTCSVCNAAALTMHM-IEQTLNEKLETDKIKVVQ 321 >gi|292655497|ref|YP_003535394.1| nifU C-terminal domain-containing protein [Haloferax volcanii DS2] gi|291370386|gb|ADE02613.1| nifU C-terminal domain protein [Haloferax volcanii DS2] Length = 104 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 9/73 (12%) Query: 122 KEVLDNRVR---PAVARDGGD--IVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176 +E LD +R P + GGD I G V++S+ GACSGC + T + + Sbjct: 11 EERLDLFMRRNFPQIEMHGGDAGIEAIDEETGEVWISLTGACSGCGISPMT----IQALK 66 Query: 177 NHFVPEVKDIRTV 189 V E ++I V Sbjct: 67 ARMVAEFEEIDAV 79 >gi|15605453|ref|NP_220239.1| NifU-related protein [Chlamydia trachomatis D/UW-3/CX] gi|76789460|ref|YP_328546.1| hypothetical protein CTA_0782 [Chlamydia trachomatis A/HAR-13] gi|237803150|ref|YP_002888344.1| hypothetical protein JALI_7251 [Chlamydia trachomatis B/Jali20/OT] gi|237805071|ref|YP_002889225.1| hypothetical protein CTB_7251 [Chlamydia trachomatis B/TZ1A828/OT] gi|3329177|gb|AAC68315.1| NifU-related protein [Chlamydia trachomatis D/UW-3/CX] gi|76167990|gb|AAX50998.1| NifU [Chlamydia trachomatis A/HAR-13] gi|231273371|emb|CAX10286.1| conserved hypothetical protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231274384|emb|CAX11179.1| conserved hypothetical protein [Chlamydia trachomatis B/Jali20/OT] gi|296436265|gb|ADH18439.1| hypothetical protein G9768_03810 [Chlamydia trachomatis G/9768] gi|296438125|gb|ADH20286.1| hypothetical protein G11074_03805 [Chlamydia trachomatis G/11074] gi|297140626|gb|ADH97384.1| hypothetical protein CTG9301_03820 [Chlamydia trachomatis G/9301] gi|297748851|gb|ADI51397.1| Nifu [Chlamydia trachomatis D-EC] gi|297749731|gb|ADI52409.1| Nifu [Chlamydia trachomatis D-LC] Length = 260 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 4/96 (4%) Query: 85 FISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG 144 F D + ++ G+ E SA+ +KE ++ P VA D GD+ Sbjct: 154 FPFKDALSQLSEGNPYSTEEWGALSHDEQLSALNTMMKE----KITPLVAVDSGDVRIVH 209 Query: 145 YRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 + V ++ G CS C S+ + + + V Sbjct: 210 FEGLTVTIAYSGNCSSCLSSVGSTLNSIGQLFRAHV 245 >gi|269128782|ref|YP_003302152.1| nitrogen-fixing NifU domain-containing protein [Thermomonospora curvata DSM 43183] gi|268313740|gb|ACZ00115.1| nitrogen-fixing NifU domain protein [Thermomonospora curvata DSM 43183] Length = 206 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 V +RI L + +RP + GGD DG+ + + + GC S++ L+ V Sbjct: 112 PVAERITRALAD-IRPHLRARGGDAELIAVSDGVARVRL--SARGCGSSAAQLRQAVEAA 168 Query: 176 LNHFVPEVKDIRTV 189 + PE+ I V Sbjct: 169 IGAAAPELSGIEQV 182 >gi|255349114|ref|ZP_05381121.1| hypothetical protein Ctra70_03875 [Chlamydia trachomatis 70] gi|255503651|ref|ZP_05382041.1| hypothetical protein Ctra7_03870 [Chlamydia trachomatis 70s] gi|255507330|ref|ZP_05382969.1| hypothetical protein CtraD_03855 [Chlamydia trachomatis D(s)2923] gi|289525764|emb|CBJ15245.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2] gi|296435338|gb|ADH17516.1| hypothetical protein E150_03835 [Chlamydia trachomatis E/150] gi|296439055|gb|ADH21208.1| hypothetical protein E11023_03800 [Chlamydia trachomatis E/11023] Length = 260 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 4/96 (4%) Query: 85 FISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG 144 F D + ++ G+ E SA+ +KE ++ P VA D GD+ Sbjct: 154 FPFKDALSQLSEGNPYSTEEWGALSHDEQLSALNTMMKE----KIAPLVAVDSGDVRIVH 209 Query: 145 YRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 + V ++ G CS C S+ + + + V Sbjct: 210 FEGLTVTIAYSGNCSSCLSSVGSTLNSIGQLFRAHV 245 >gi|166154062|ref|YP_001654180.1| hypothetical protein CTL0089 [Chlamydia trachomatis 434/Bu] gi|166154937|ref|YP_001653192.1| hypothetical protein CTLon_0089 [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|255311550|ref|ZP_05354120.1| hypothetical protein Ctra62_03810 [Chlamydia trachomatis 6276] gi|255317851|ref|ZP_05359097.1| hypothetical protein Ctra6_03805 [Chlamydia trachomatis 6276s] gi|301335265|ref|ZP_07223509.1| hypothetical protein CtraL_00475 [Chlamydia trachomatis L2tet1] gi|165930050|emb|CAP03533.1| conserved hypothetical protein [Chlamydia trachomatis 434/Bu] gi|165930925|emb|CAP06487.1| conserved hypothetical protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|296437194|gb|ADH19364.1| hypothetical protein G11222_03830 [Chlamydia trachomatis G/11222] Length = 260 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 4/96 (4%) Query: 85 FISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG 144 F D + ++ G+ E SA+ +KE ++ P VA D GD+ Sbjct: 154 FPFKDALSQLSEGNPYSTEEWGALSHDEQLSALNTMMKE----KIAPLVAVDSGDVRIVH 209 Query: 145 YRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 + V ++ G CS C S+ + + + V Sbjct: 210 FEGLTVTIAYSGNCSSCLSSVGSTLNSIGQLFRAHV 245 >gi|299115521|emb|CBN75725.1| PBS lyase HEAT domain protein repeat-containing protein [Ectocarpus siliculosus] Length = 452 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 19/104 (18%) Query: 5 TEDTPNPATLKFIPGQVVLVEGAIHFSNA----------------KEAEISPLASRIFSI 48 E TPNP++ KF Q + G+ + EA + L R+ I Sbjct: 51 IESTPNPSSFKFDLDQTLYGPGSGATATRGITYSRAAAQQQQAGVPEAPEAIL--RLLEI 108 Query: 49 PGIASVYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPI 91 G+ SVY D++ + K W+ + P + + S DP+ Sbjct: 109 QGVESVYALADWLCLNKKPSAKWDAIVPAAVEALGGAASSLDPL 152 >gi|157692691|ref|YP_001487153.1| hypothetical protein BPUM_1923 [Bacillus pumilus SAFR-032] gi|157681449|gb|ABV62593.1| hypothetical protein BPUM_1923 [Bacillus pumilus SAFR-032] Length = 378 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Query: 5 TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVG 64 E TP+P T+K I + + + ++ ++ E + RI +I G+ VY DF+ V Sbjct: 6 IEPTPSPNTMKVILTEALAGGKSNNYKKDQKEEAPEMIKRILNIEGVKGVYHVADFLAVE 65 Query: 65 KDQ-YDWEHLRPPVLGM 80 ++ +DW+ + V Sbjct: 66 RNAKFDWQGILQQVREA 82 >gi|152975403|ref|YP_001374920.1| HEAT repeat-containing PBS lyase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024155|gb|ABS21925.1| PBS lyase HEAT domain protein repeat-containing protein [Bacillus cytotoxicus NVH 391-98] Length = 375 Score = 49.8 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASR-IFSIPGIASVYFGY 58 M I+ E TP+P T+K I + VL GA + + + +P + I I GI VY Sbjct: 1 MKIKAIEPTPSPNTMKVILNE-VLPAGARNNYTKENVDQAPEQVQHILKIEGIKGVYHVA 59 Query: 59 DFITVGKDQ-YDWEHLRPPVLGM 80 DF+ V ++ YDW+ L V + Sbjct: 60 DFLAVERNAKYDWKVLLQQVRTV 82 >gi|205373116|ref|ZP_03225920.1| HEAT repeat-containing PBS lyase [Bacillus coahuilensis m4-4] Length = 372 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Query: 5 TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGYDFITV 63 E TP+P T+K + L G + +++++P I +I GI VY DF+ V Sbjct: 6 IEPTPSPNTMKVLLDHE-LPSGNRNNYTKDQSDVAPEEIQSILAIEGIKGVYHVSDFLAV 64 Query: 64 GKDQ-YDWEHLRPPVL 78 ++ YDWE L V Sbjct: 65 ERNAKYDWESLLIQVR 80 >gi|240146743|ref|ZP_04745344.1| thioredoxin-related protein [Roseburia intestinalis L1-82] gi|257201098|gb|EEU99382.1| thioredoxin-related protein [Roseburia intestinalis L1-82] gi|291535952|emb|CBL09064.1| NifU-like domain [Roseburia intestinalis M50/1] gi|291538444|emb|CBL11555.1| NifU-like domain [Roseburia intestinalis XB6B4] Length = 82 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 25/46 (54%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCP 162 + +R+K+ +D + P + DGG I G ++ + ++G CS C Sbjct: 1 MDERLKKYVDEVIAPKLQGDGGFIDLTGTDGNVLHVRLQGECSKCA 46 >gi|23097960|ref|NP_691426.1| hypothetical protein OB0505 [Oceanobacillus iheyensis HTE831] gi|22776184|dbj|BAC12461.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 378 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 45/101 (44%), Gaps = 4/101 (3%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISP-LASRIFSIPGIASVYFGYDFI 61 + E TP+P ++K + + E +++ + +P +F++ G+ ++Y DFI Sbjct: 4 VSIEPTPSPHSMKINLSESLPPEETYNYNEKDDLTNAPNYVQELFALTGVKNIYRVVDFI 63 Query: 62 TVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMK 101 + + + WE L P V ++ G I + + + Sbjct: 64 ALARHPKTPWEELLPQVREVLGT--TEGLEIPNITPSTEQQ 102 >gi|229918483|ref|YP_002887129.1| PBS lyase HEAT domain protein repeat-containing protein [Exiguobacterium sp. AT1b] gi|229469912|gb|ACQ71684.1| PBS lyase HEAT domain protein repeat-containing protein [Exiguobacterium sp. AT1b] Length = 363 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 20/127 (15%) Query: 5 TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVG 64 E TP+P LK I G + + + + I + G+ SVY DF+ V Sbjct: 6 IEPTPSPNNLKIIVDPPFEGRGTTY--DKASTDAPAIIQEIIGLRGVKSVYAVSDFLAVE 63 Query: 65 K-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKE 123 + ++DW + + +++++ S V ++ Sbjct: 64 RHPKHDWHDVMNEIR-----------------RAFGEQVEEVESTKMDTDYEPVHVSVQF 106 Query: 124 VLDNRVR 130 VLD ++ Sbjct: 107 VLDVPMQ 113 >gi|194016950|ref|ZP_03055563.1| YpgR [Bacillus pumilus ATCC 7061] gi|194011556|gb|EDW21125.1| YpgR [Bacillus pumilus ATCC 7061] Length = 378 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Query: 5 TEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVG 64 E TP+P T+K I + + + ++ ++ E + RI +I G+ VY DF+ V Sbjct: 6 IEPTPSPNTMKVILTEALAGGKSNNYKKDQKDEAPEMIKRILNIEGVKGVYHVADFLAVE 65 Query: 65 KDQ-YDWEHLRPPVLGM 80 ++ +DW+ + V Sbjct: 66 RNAKFDWQGILQQVREA 82 >gi|289642381|ref|ZP_06474528.1| Rieske (2Fe-2S) domain protein [Frankia symbiont of Datisca glomerata] gi|289507813|gb|EFD28765.1| Rieske (2Fe-2S) domain protein [Frankia symbiont of Datisca glomerata] Length = 296 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 23/60 (38%) Query: 127 NRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +VRP + GGD FL + G C+ A TL+ V L V + + Sbjct: 107 EKVRPYLRAHGGDAELVRVDGDTAFLRVSGTCNSRALAGVTLREVVKEALIGGVGSIARV 166 >gi|299536936|ref|ZP_07050243.1| hypothetical protein BFZC1_12978 [Lysinibacillus fusiformis ZC1] gi|298727760|gb|EFI68328.1| hypothetical protein BFZC1_12978 [Lysinibacillus fusiformis ZC1] Length = 375 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E TP+P ++K + + + +F+ + E + A+ I +I G+ VY DF Sbjct: 4 ITIEPTPSPNSMKIVVDTELPFGKSYNFTKDNKDEATGEAAAILAIEGVKGVYHVADFFA 63 Query: 63 VGKDQ-YDWEHLRPPVLGMIMEHFISGDPII 92 V ++ Y WE + + ++ E + + + Sbjct: 64 VERNAKYAWEGILASIRQVLGEDVQTQEETV 94 >gi|330901168|gb|EGH32587.1| yhgI protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 71 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%) Query: 134 ARDGGDIVFKGYRD----GIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 A GG + + I L G C GC A TLK G+ L +PE+ +R V Sbjct: 1 ASHGGQVTLIDVVEEEAKNIAVLQFGGGCQGCGQADVTLKEGIERTLLERIPELSGVRDV 60 >gi|39934444|ref|NP_946720.1| nitrogen-fixing NifU C-terminal [Rhodopseudomonas palustris CGA009] gi|39648293|emb|CAE26813.1| Nitrogen-fixing NifU, C-terminal [Rhodopseudomonas palustris CGA009] Length = 355 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 4/92 (4%) Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMG-SGDFIESDSAVVQ-RIKEVLDN--RVRPAVARD 136 I++ F+ G + ++D D + S V RIK + D +RP + D Sbjct: 244 IVQRFVKGTVAVDELARSVRYVEDKYLRADVRSAISPVEATRIKIISDTIAALRPNIQAD 303 Query: 137 GGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 GGD+ + + + G C C +TL Sbjct: 304 GGDLELISVNGNRIEVKLHGKCRACGLVGQTL 335 >gi|167463814|ref|ZP_02328903.1| Rhodopsin-like GPCR superfamily protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 378 Score = 48.6 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 7/135 (5%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAI-HFSNAKEAEISPLASRIFSIPGIASVYFGYDFI 61 + E TP+P ++K + L +G + F+ + R+ IP + SV+ DFI Sbjct: 4 VSIEPTPSPNSMK-LNLDTALPKGKMYSFTREERNSAPGYIRRLLDIPDVKSVFQVTDFI 62 Query: 62 TVGK-DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120 + + + DW+ +L E F + + D ++ + + R Sbjct: 63 ALDRTPKGDWK----QILAAAREVFGESGVSVEDAAAQDSGYGEVTVKLQVFRGIPIQVR 118 Query: 121 IKEVLDNRVRPAVAR 135 + + + R Sbjct: 119 VNNDAEEKRASMPQR 133 >gi|300120222|emb|CBK19776.2| unnamed protein product [Blastocystis hominis] Length = 97 Score = 48.3 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 17/23 (73%) Query: 164 ASETLKYGVANILNHFVPEVKDI 186 +S TLK GV +L H++PEVK + Sbjct: 19 SSITLKQGVEKMLMHYIPEVKRV 41 >gi|49483621|ref|YP_040845.1| hypothetical protein SAR1443 [Staphylococcus aureus subsp. aureus MRSA252] gi|82751021|ref|YP_416762.1| hypothetical protein SAB1285c [Staphylococcus aureus RF122] gi|257425494|ref|ZP_05601919.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428154|ref|ZP_05604552.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430785|ref|ZP_05607167.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433544|ref|ZP_05609902.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257436385|ref|ZP_05612432.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|258422537|ref|ZP_05685445.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|282904012|ref|ZP_06311900.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C160] gi|282905777|ref|ZP_06313632.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282908747|ref|ZP_06316565.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911010|ref|ZP_06318812.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282914220|ref|ZP_06322007.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M899] gi|282916697|ref|ZP_06324455.1| hypothetical protein SATG_00190 [Staphylococcus aureus subsp. aureus D139] gi|282919142|ref|ZP_06326877.1| hypothetical protein SASG_00448 [Staphylococcus aureus subsp. aureus C427] gi|282924325|ref|ZP_06331999.1| hypothetical protein SARG_02019 [Staphylococcus aureus subsp. aureus C101] gi|283770501|ref|ZP_06343393.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus H19] gi|283958195|ref|ZP_06375646.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus A017934/97] gi|293501246|ref|ZP_06667097.1| hypothetical protein SCAG_01776 [Staphylococcus aureus subsp. aureus 58-424] gi|293510207|ref|ZP_06668915.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|293526801|ref|ZP_06671485.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M1015] gi|295427941|ref|ZP_06820573.1| hypothetical protein SIAG_00465 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591094|ref|ZP_06949732.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MN8] gi|49241750|emb|CAG40440.1| hypothetical protein SAR1443 [Staphylococcus aureus subsp. aureus MRSA252] gi|82656552|emb|CAI80974.1| conserved hypothetical protein [Staphylococcus aureus RF122] gi|257271951|gb|EEV04089.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257274995|gb|EEV06482.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278913|gb|EEV09532.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281637|gb|EEV11774.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257284667|gb|EEV14787.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|257847294|gb|EEV71300.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|282313712|gb|EFB44105.1| hypothetical protein SARG_02019 [Staphylococcus aureus subsp. aureus C101] gi|282316952|gb|EFB47326.1| hypothetical protein SASG_00448 [Staphylococcus aureus subsp. aureus C427] gi|282319184|gb|EFB49536.1| hypothetical protein SATG_00190 [Staphylococcus aureus subsp. aureus D139] gi|282322288|gb|EFB52612.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M899] gi|282324705|gb|EFB55015.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282327011|gb|EFB57306.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331069|gb|EFB60583.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282595630|gb|EFC00594.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C160] gi|283460648|gb|EFC07738.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus H19] gi|283470644|emb|CAQ49855.1| conserved virulence factor C [Staphylococcus aureus subsp. aureus ST398] gi|283790344|gb|EFC29161.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus A017934/97] gi|290920359|gb|EFD97423.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M1015] gi|291096251|gb|EFE26512.1| hypothetical protein SCAG_01776 [Staphylococcus aureus subsp. aureus 58-424] gi|291467151|gb|EFF09669.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|295128299|gb|EFG57933.1| hypothetical protein SIAG_00465 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575980|gb|EFH94696.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MN8] gi|298694724|gb|ADI97946.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ED133] gi|302333043|gb|ADL23236.1| Scaffold protein Nfu/NifU N terminal [Staphylococcus aureus subsp. aureus JKD6159] gi|312438167|gb|ADQ77238.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH60] gi|315195326|gb|EFU25713.1| hypothetical protein CGSSa00_06635 [Staphylococcus aureus subsp. aureus CGS00] gi|323438446|gb|EGA96200.1| hypothetical protein SAO11_2709 [Staphylococcus aureus O11] gi|323444084|gb|EGB01695.1| hypothetical protein SAO46_0194 [Staphylococcus aureus O46] Length = 83 Score = 48.3 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 2/79 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I +TPN T+K + + ++ +++ + + I + G+ S++ DFI+ Sbjct: 4 ISISETPNHNTMKITLSESREGMTSDTYTKVDDSQPA-FINDILKVEGVKSIFHVMDFIS 62 Query: 63 VGKD-QYDWEHLRPPVLGM 80 V K+ +WE + P V + Sbjct: 63 VDKENDANWETVLPKVEAV 81 >gi|15924420|ref|NP_371954.1| hypothetical protein SAV1430 [Staphylococcus aureus subsp. aureus Mu50] gi|15927011|ref|NP_374544.1| hypothetical protein SA1263 [Staphylococcus aureus subsp. aureus N315] gi|21283049|ref|NP_646137.1| hypothetical protein MW1320 [Staphylococcus aureus subsp. aureus MW2] gi|49486271|ref|YP_043492.1| hypothetical protein SAS1373 [Staphylococcus aureus subsp. aureus MSSA476] gi|57650386|ref|YP_186314.1| hypothetical protein SACOL1466 [Staphylococcus aureus subsp. aureus COL] gi|87162375|ref|YP_494020.1| hypothetical protein SAUSA300_1323 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195162|ref|YP_499963.1| hypothetical protein SAOUHSC_01438 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267917|ref|YP_001246860.1| hypothetical protein SaurJH9_1490 [Staphylococcus aureus subsp. aureus JH9] gi|150393980|ref|YP_001316655.1| hypothetical protein SaurJH1_1519 [Staphylococcus aureus subsp. aureus JH1] gi|151221553|ref|YP_001332375.1| hypothetical protein NWMN_1341 [Staphylococcus aureus subsp. aureus str. Newman] gi|156979749|ref|YP_001442008.1| hypothetical protein SAHV_1418 [Staphylococcus aureus subsp. aureus Mu3] gi|161509597|ref|YP_001575256.1| hypothetical protein USA300HOU_1367 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142065|ref|ZP_03566558.1| hypothetical protein SauraJ_10590 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315247|ref|ZP_04838460.1| hypothetical protein SauraC_03612 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732069|ref|ZP_04866234.1| Sav1430-like protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|255006219|ref|ZP_05144820.2| hypothetical protein SauraM_07110 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795515|ref|ZP_05644494.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|258413324|ref|ZP_05681600.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|258420570|ref|ZP_05683512.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|258434659|ref|ZP_05688733.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258444765|ref|ZP_05693094.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258447401|ref|ZP_05695545.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|258449242|ref|ZP_05697345.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|258451089|ref|ZP_05699124.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|258454620|ref|ZP_05702584.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|262050399|ref|ZP_06023239.1| hypothetical protein SAD30_2216 [Staphylococcus aureus D30] gi|269203052|ref|YP_003282321.1| hypothetical protein SAAV_1413 [Staphylococcus aureus subsp. aureus ED98] gi|282892924|ref|ZP_06301159.1| hypothetical protein SGAG_00279 [Staphylococcus aureus A8117] gi|282927527|ref|ZP_06335144.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|282927955|ref|ZP_06335564.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|284024430|ref|ZP_06378828.1| hypothetical protein Saura13_07550 [Staphylococcus aureus subsp. aureus 132] gi|294850754|ref|ZP_06791472.1| hypothetical protein SKAG_02852 [Staphylococcus aureus A9754] gi|295406374|ref|ZP_06816181.1| hypothetical protein SMAG_01539 [Staphylococcus aureus A8819] gi|296275290|ref|ZP_06857797.1| hypothetical protein SauraMR_03060 [Staphylococcus aureus subsp. aureus MR1] gi|297207912|ref|ZP_06924345.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244603|ref|ZP_06928486.1| hypothetical protein SLAG_00688 [Staphylococcus aureus A8796] gi|300911996|ref|ZP_07129439.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH70] gi|304380991|ref|ZP_07363648.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13701228|dbj|BAB42523.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14247201|dbj|BAB57592.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|21204488|dbj|BAB95185.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49244714|emb|CAG43149.1| hypothetical protein SAS1373 [Staphylococcus aureus subsp. aureus MSSA476] gi|57284572|gb|AAW36666.1| conserved domain protein [Staphylococcus aureus subsp. aureus COL] gi|87128349|gb|ABD22863.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202720|gb|ABD30530.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740986|gb|ABQ49284.1| hypothetical protein SaurJH9_1490 [Staphylococcus aureus subsp. aureus JH9] gi|149946432|gb|ABR52368.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus JH1] gi|150374353|dbj|BAF67613.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156721884|dbj|BAF78301.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368406|gb|ABX29377.1| hypothetical protein USA300HOU_1367 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724202|gb|EES92931.1| Sav1430-like protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257789487|gb|EEV27827.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|257839888|gb|EEV64356.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|257843518|gb|EEV67925.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|257849020|gb|EEV73002.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257850258|gb|EEV74211.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257853592|gb|EEV76551.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|257857230|gb|EEV80128.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|257861144|gb|EEV83957.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|257863003|gb|EEV85767.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|259161518|gb|EEW46120.1| hypothetical protein SAD30_2216 [Staphylococcus aureus D30] gi|262075342|gb|ACY11315.1| hypothetical protein SAAV_1413 [Staphylococcus aureus subsp. aureus ED98] gi|269940925|emb|CBI49309.1| hypothetical protein SATW20_14310 [Staphylococcus aureus subsp. aureus TW20] gi|282590252|gb|EFB95332.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|282592067|gb|EFB97093.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|282764921|gb|EFC05046.1| hypothetical protein SGAG_00279 [Staphylococcus aureus A8117] gi|285817108|gb|ADC37595.1| hypothetical protein SA2981_1384 [Staphylococcus aureus 04-02981] gi|294822394|gb|EFG38845.1| hypothetical protein SKAG_02852 [Staphylococcus aureus A9754] gi|294968962|gb|EFG44984.1| hypothetical protein SMAG_01539 [Staphylococcus aureus A8819] gi|296887486|gb|EFH26386.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178633|gb|EFH37879.1| hypothetical protein SLAG_00688 [Staphylococcus aureus A8796] gi|300886242|gb|EFK81444.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH70] gi|304340467|gb|EFM06404.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829824|emb|CBX34666.1| chain A, X-Ray Crystal Structure Of Protein Sav1430 From Staphylococcus aureus subsp. aureus ECT-R 2. Northeast Structural Genomics Consortium Target Zr18 gi|315129140|gb|EFT85135.1| hypothetical protein CGSSa03_06851 [Staphylococcus aureus subsp. aureus CGS03] gi|315195866|gb|EFU26234.1| hypothetical protein CGSSa01_11892 [Staphylococcus aureus subsp. aureus CGS01] gi|320142675|gb|EFW34478.1| conserved domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329314107|gb|AEB88520.1| Conserved domain protein [Staphylococcus aureus subsp. aureus T0131] gi|329727149|gb|EGG63605.1| hypothetical protein SA21172_0285 [Staphylococcus aureus subsp. aureus 21172] gi|329730575|gb|EGG66961.1| hypothetical protein SA21189_0367 [Staphylococcus aureus subsp. aureus 21189] gi|329733409|gb|EGG69741.1| hypothetical protein SA21193_2490 [Staphylococcus aureus subsp. aureus 21193] Length = 83 Score = 48.3 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 2/79 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I +TPN T+K + + ++ +++ + + I + G+ S++ DFI+ Sbjct: 4 ISISETPNHNTMKITLSESREGMTSDTYTKVDDSQPA-FINDILKVEGVKSIFHVMDFIS 62 Query: 63 VGKD-QYDWEHLRPPVLGM 80 V K+ +WE + P V + Sbjct: 63 VDKENDANWETVLPKVEAV 81 >gi|55669547|pdb|1PQX|A Chain A, Solution Nmr Structure Of Staphylococcus Aureus Protein Sav1430. Northeast Strucutral Genomics Consortium Target Zr18 Length = 91 Score = 48.3 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 2/79 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I +TPN T+K + + ++ +++ + + I + G+ S++ DFI+ Sbjct: 4 ISISETPNHNTMKITLSESREGMTSDTYTKVDDSQPA-FINDILKVEGVKSIFHVMDFIS 62 Query: 63 VGKD-QYDWEHLRPPVLGM 80 V K+ +WE + P V + Sbjct: 63 VDKENDANWETVLPKVEAV 81 >gi|222478478|ref|YP_002564715.1| NifU domain-containing protein [Halorubrum lacusprofundi ATCC 49239] gi|222451380|gb|ACM55645.1| NifU domain-containing protein [Halorubrum lacusprofundi ATCC 49239] Length = 108 Score = 47.9 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 4/76 (5%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFK--GYRDGIVFLSMRGACSGCPSASETLKY 170 SD ++ R+++ + ++ P + GG V + G V + + G CSGC ++ T Sbjct: 2 SDESLADRVEKWMVGQM-PIIQMHGGTSVVREADAETGEVVVELGGTCSGCGISNITADN 60 Query: 171 GVANILNHFVPEVKDI 186 + L EV+++ Sbjct: 61 -IRRDLIMDFDEVENV 75 >gi|323489360|ref|ZP_08094590.1| hypothetical protein GPDM_08410 [Planococcus donghaensis MPA1U2] gi|323397001|gb|EGA89817.1| hypothetical protein GPDM_08410 [Planococcus donghaensis MPA1U2] Length = 376 Score = 47.9 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 9/112 (8%) Query: 1 MFIQT-EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLA-SRIFSIPGIASVYFGY 58 M I T E TP+P T+K I Q L G H N E +P + +I G+ VY Sbjct: 1 MKILTIEPTPSPNTMKVIIDQE-LPFGKSHNYNKDNIEAAPKEVQELLTIDGVKGVYHVA 59 Query: 59 DFITVGK-DQYDWEHL---RPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMG 106 DF+ V + ++DWE + V G EH +GD I + G++ + Sbjct: 60 DFLAVERISKFDWEAILAQVRNVFGEDREH--TGDEIELDEHFGEVYVHVQE 109 >gi|169827750|ref|YP_001697908.1| hypothetical protein Bsph_2211 [Lysinibacillus sphaericus C3-41] gi|168992238|gb|ACA39778.1| Hypothetical ypgR protein [Lysinibacillus sphaericus C3-41] Length = 375 Score = 47.5 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 2/99 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E TP+P ++K + + + +F+ + E + A+ I +I GI VY DF Sbjct: 4 ITIEPTPSPNSMKIVVDTELPFGKSYNFTKDNKDEATGEAAAILAIEGIKGVYHVADFFA 63 Query: 63 VGKDQ-YDWEHLRPPVLGMIMEHFIS-GDPIIHNGGLGD 99 V ++ Y WE + + ++ E + +P++ N G+ Sbjct: 64 VERNAKYAWEGILASIRQVLGEDVETQDEPMVANEFYGE 102 >gi|315925734|ref|ZP_07921942.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315620977|gb|EFV00950.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 99 Score = 47.5 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 30/72 (41%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 A+++++ D + ++ G + + + G C GC S S+T+ + Sbjct: 4 EALLEKLDAFFDADINEYLSEHHGGAEVVDVEGDELIIRLTGKCRGCLSMSQTVDGIILK 63 Query: 175 ILNHFVPEVKDI 186 ++ P +K + Sbjct: 64 KVSAVFPFIKKV 75 >gi|68067185|ref|XP_675563.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56494821|emb|CAH97204.1| hypothetical protein PB104538.00.0 [Plasmodium berghei] Length = 175 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%) Query: 76 PVLGMIMEH-FISGDPIIHNGGLGDMKLDDMGSGDFIESDS--AVVQRIKEVLDNRVRPA 132 + I S + I + G + + + E++ ++ IK +++ RVRP Sbjct: 66 EINNFIETFQKNSDNSISNEGNIIPILQKIKNETKYHENEDAMEIISSIKLLIEKRVRPI 125 Query: 133 VARDGGDIVFKGYR 146 V DGGDI F + Sbjct: 126 VVNDGGDIKFVCFD 139 >gi|126653245|ref|ZP_01725363.1| hypothetical protein BB14905_04073 [Bacillus sp. B14905] gi|126589996|gb|EAZ84124.1| hypothetical protein BB14905_04073 [Bacillus sp. B14905] Length = 375 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I E TP+P ++K + + + +F+ + E + A+ I +I GI VY DF Sbjct: 4 ITIEPTPSPNSMKIVVDTELPFGKSYNFTKDNKDEATGEAAAILAIEGIKGVYHVADFFA 63 Query: 63 VGKDQ-YDWEHLRPPVLGMIMEHFISGDPII 92 V ++ Y WE + + ++ E + D I Sbjct: 64 VERNAKYAWEGILASIRQVLGEDVETQDETI 94 >gi|297516950|ref|ZP_06935336.1| putative DNA uptake protein [Escherichia coli OP50] Length = 121 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 46/122 (37%), Gaps = 14/122 (11%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSI-PGIASVYFGYDFITVGKDQYDWEHLRPPVLG 79 + HF+ + R+F I PG + G + + L+ +L Sbjct: 3 RISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTALKFDLLT 62 Query: 80 MIMEHFISGDPIIHNGGLGDMKLDDMGSG----------DFIESDSAVVQRIKEVLDNRV 129 ++ + P + + + D D +GS + D+ +++R++ +L +++ Sbjct: 63 AYVDELSA--PYLEDAEI-DFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYMLQSQI 119 Query: 130 RP 131 P Sbjct: 120 NP 121 >gi|298241650|ref|ZP_06965457.1| nitrogen-fixing NifU domain protein [Ktedonobacter racemifer DSM 44963] gi|297554704|gb|EFH88568.1| nitrogen-fixing NifU domain protein [Ktedonobacter racemifer DSM 44963] Length = 188 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 42/101 (41%), Gaps = 3/101 (2%) Query: 86 ISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY 145 +GD ++ ++ + D R+++ L +++ + GG + Sbjct: 61 STGDALVERFAQDELLASLLLLHGLHPLDLET--RVRQAL-GKLQTTLGPRGGTLDLLKI 117 Query: 146 RDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 +L + G S CPS++ +L + ++ PE+++I Sbjct: 118 EQARAYLILNGNHSSCPSSNASLTAKIEQAVHEVAPELEEI 158 >gi|170290577|ref|YP_001737393.1| metal-sulfur cluster biosynthetic protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170174657|gb|ACB07710.1| Predicted metal-sulfur cluster biosynthetic enzyme [Candidatus Korarchaeum cryptofilum OPF8] Length = 147 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 4/78 (5%) Query: 113 SDSAVVQRIKEVLDNRVRPAV---ARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 S + +I VL P + D G I DG V + M GCP + TL Sbjct: 13 SSEEIKAKILGVLKFITDPEIPINIVDLGLIREMKVEDGKVNIKMVMTAPGCPYS-MTLL 71 Query: 170 YGVANILNHFVPEVKDIR 187 V + +PEV++++ Sbjct: 72 RIVEESIKQAIPEVEEVK 89 >gi|172058035|ref|YP_001814495.1| HEAT repeat-containing PBS lyase [Exiguobacterium sibiricum 255-15] gi|171990556|gb|ACB61478.1| PBS lyase HEAT domain protein repeat-containing protein [Exiguobacterium sibiricum 255-15] Length = 363 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISP-LASRIFSIPGIASVYFGYDFI 61 I E TP+P +K I + +G + A +P +++ IPGI SVY DF+ Sbjct: 4 IAIEPTPSPNNMKVIVDETFSEKGQ----TFEHAFGAPDHVAKLLEIPGIKSVYQVSDFL 59 Query: 62 TVGK-DQYDWEHLRPPVL 78 V + +YDW L + Sbjct: 60 AVERFPKYDWRTLVIEIR 77 >gi|320103903|ref|YP_004179494.1| nitrogen-fixing NifU domain-containing protein [Isosphaera pallida ATCC 43644] gi|319751185|gb|ADV62945.1| nitrogen-fixing NifU domain protein [Isosphaera pallida ATCC 43644] Length = 100 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 21/41 (51%) Query: 149 IVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 + + G C+ CP+ ++ + G+ ++ VP VK + V Sbjct: 59 VAQVRFSGVCASCPATAQAILLGIEAVVRRRVPSVKFVEAV 99 >gi|85544714|pdb|2FFM|A Chain A, X-Ray Crystal Structure Of Protein Sav1430 From Staphylococcus Aureus. Northeast Structural Genomics Consortium Target Zr18 Length = 91 Score = 46.3 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Query: 3 IQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFIT 62 I +TPN T K + + ++ +++ + + I + G+ S++ DFI+ Sbjct: 4 ISISETPNHNTXKITLSESREGXTSDTYTKVDDSQPA-FINDILKVEGVKSIFHVXDFIS 62 Query: 63 VGKD-QYDWEHLRPPVLGM 80 V K+ +WE + P V + Sbjct: 63 VDKENDANWETVLPKVEAV 81 >gi|289648714|ref|ZP_06480057.1| hypothetical protein Psyrpa2_13330 [Pseudomonas syringae pv. aesculi str. 2250] Length = 46 Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 164 ASETLKYGVANILNHFVPEVKDIRTV 189 A TLK G+ L +PE+ +R V Sbjct: 10 ADVTLKEGIERTLLEHIPELSGVRDV 35 >gi|220932338|ref|YP_002509246.1| Thioredoxin-like protein [Halothermothrix orenii H 168] gi|219993648|gb|ACL70251.1| Thioredoxin-like protein [Halothermothrix orenii H 168] Length = 84 Score = 44.8 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 27/46 (58%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGC 161 + ++I+ ++ +RP + DGGDI ++GY++ V + C+ C Sbjct: 2 ELEKKIEHYIEKSIRPRIRVDGGDIKYEGYKNETVIIGAYAGCATC 47 >gi|111221823|ref|YP_712617.1| hypothetical protein FRAAL2394 [Frankia alni ACN14a] gi|111149355|emb|CAJ61043.1| hypothetical protein FRAAL2394 [Frankia alni ACN14a] Length = 180 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 4/103 (3%) Query: 85 FISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG 144 + +G P + D + + + V +R+ ++ R+RPAV GG+I G Sbjct: 47 YAAGAPDVTAALTADELVGHLLVLHDVHP-EPVDRRVARAIE-RLRPAVRDRGGEIELVG 104 Query: 145 YRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 G+ +S+ GC SA+ + V + PE+ D+R Sbjct: 105 IERGVAEISLT--LGGCGSAAGEVLAAVREAVLAVAPELSDVR 145 >gi|301336264|ref|ZP_07224466.1| NifU-related protein [Chlamydia muridarum MopnTet14] Length = 260 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 4/92 (4%) Query: 89 DPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDG 148 + ++H ++ + + E S + +KE ++ P VA D G + + Sbjct: 158 EALLHLHDCQPFSKEEWENLSYDEQLSTLNTMMKE----KIAPLVAMDDGSVRIVRFEGL 213 Query: 149 IVFLSMRGACSGCPSASETLKYGVANILNHFV 180 V ++ G CS C SA + + + V Sbjct: 214 TVTIAYSGNCSSCLSAVGSTLNSIGQLFRAHV 245 >gi|307719916|ref|YP_003875448.1| hypothetical protein STHERM_c22530 [Spirochaeta thermophila DSM 6192] gi|306533641|gb|ADN03175.1| hypothetical protein STHERM_c22530 [Spirochaeta thermophila DSM 6192] Length = 27 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 13/27 (48%) Query: 163 SASETLKYGVANILNHFVPEVKDIRTV 189 + TLK GV L +PE+ + V Sbjct: 1 MSQITLKQGVEAYLKRKLPEISSVEAV 27 >gi|15791359|ref|NP_281183.1| hypothetical protein VNG2628H [Halobacterium sp. NRC-1] gi|169237118|ref|YP_001690318.1| hypothetical protein OE4689R [Halobacterium salinarum R1] gi|10582008|gb|AAG20663.1| hypothetical protein VNG_2628H [Halobacterium sp. NRC-1] gi|167728184|emb|CAP14972.1| conserved hypothetical protein [Halobacterium salinarum R1] Length = 123 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 4/73 (5%) Query: 116 AVVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVA 173 + +R++ L ++ P + GG + G V + + GACSGC + T + Sbjct: 9 DLHERVETWLVGQM-PIIRSHGGTSAVRKADATAGEVVVELGGACSGCGISPRTA-QRIK 66 Query: 174 NILNHFVPEVKDI 186 L EV D+ Sbjct: 67 TDLAAEFDEVDDV 79 >gi|15834718|ref|NP_296477.1| NifU-related protein [Chlamydia muridarum Nigg] gi|270284885|ref|ZP_06194279.1| NifU-related protein [Chlamydia muridarum Nigg] gi|270288913|ref|ZP_06195215.1| NifU-related protein [Chlamydia muridarum Weiss] gi|7190128|gb|AAF38973.1| NifU-related protein [Chlamydia muridarum Nigg] Length = 260 Score = 44.0 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 4/96 (4%) Query: 85 FISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKG 144 F D ++ ++ + + E S + +KE ++ P VA D G + Sbjct: 154 FPFKDALLQLNDGDPYSKEEWENLSYDEQLSTLNIMMKE----KIAPLVAMDEGSVRIVH 209 Query: 145 YRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 + V ++ G CS C SA + + + V Sbjct: 210 FEGLTVTIAYSGNCSSCLSAVGSTLNSIGQLFRAHV 245 >gi|268317577|ref|YP_003291296.1| FeS assembly SUF system protein [Rhodothermus marinus DSM 4252] gi|262335111|gb|ACY48908.1| FeS assembly SUF system protein [Rhodothermus marinus DSM 4252] Length = 113 Score = 43.2 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 6/78 (7%) Query: 114 DSAVVQRIKEVLDNRVRPAV---ARDGGDI-VFKGYRDGIVFLSMRGACSGCPSASETLK 169 D + Q I E L + P + D G I + + D V++ M GCP A TL Sbjct: 13 DKELEQAIIEALKSVYDPEIPVNIYDLGLIYEIRIFEDRTVYVKMTLTAPGCPVAG-TLP 71 Query: 170 YGVANILNHFVPEVKDIR 187 V L VP VKD R Sbjct: 72 GQVEMRLQE-VPGVKDAR 88 >gi|119719785|ref|YP_920280.1| hypothetical protein Tpen_0876 [Thermofilum pendens Hrk 5] gi|119524905|gb|ABL78277.1| protein of unknown function DUF59 [Thermofilum pendens Hrk 5] Length = 102 Score = 42.9 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 4/72 (5%) Query: 119 QRIKEVLDNRVRPAV---ARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANI 175 +R+ E L P + D G + V + M GCP + L V ++ Sbjct: 8 ERVMEALKEVYDPEIPFNVVDLGLVYGVEVDGRKVKVKMTLTAIGCPMSYF-LVEMVRDV 66 Query: 176 LNHFVPEVKDIR 187 + +PEV+D+ Sbjct: 67 IKEKIPEVEDVE 78 >gi|108804589|ref|YP_644526.1| hypothetical protein Rxyl_1755 [Rubrobacter xylanophilus DSM 9941] gi|108765832|gb|ABG04714.1| protein of unknown function DUF59 [Rubrobacter xylanophilus DSM 9941] Length = 101 Score = 42.9 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 3/76 (3%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV-A 173 V ++EVLD P D G I G+ + + C GCP+ ++ + Sbjct: 5 EEVRDALREVLDPEY-PISLVDLGLIRGVEVDGGVARIKLTYTCMGCPAMDM-IQDDIRE 62 Query: 174 NILNHFVPEVKDIRTV 189 +L E DI V Sbjct: 63 RLLRMEGIEEVDIEVV 78 >gi|78100772|pdb|1TH5|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like Protein From Oryza Sativa Length = 74 Score = 42.5 bits (99), Expect = 0.027, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 8/71 (11%) Query: 119 QRIKEVLDNRVRPAVARDGGD-IVFKGYRDGIVFLSMRGACSGCPSASE-TLKYGVANIL 176 + +++VL N +RP +A GG + F + IV + + G P+A T++ V+ L Sbjct: 7 ENVEKVL-NEIRPYLAGTGGGGLQFLMIKGPIVKVRLTG-----PAAVVRTVRIAVSKKL 60 Query: 177 NHFVPEVKDIR 187 +P ++ ++ Sbjct: 61 REKIPSIQIVQ 71 >gi|454421|gb|AAA21836.1| nitrogen fixation protein [Nostoc commune] Length = 205 Score = 41.7 bits (97), Expect = 0.043, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Query: 77 VLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARD 136 + + E+ P ++N G+ + + + S + ++ + I++VLD VRP + D Sbjct: 102 IRSVQQEYAS---PALNNYGVK-VATEIVTSKERALTNVQKIALIQKVLDEEVRPVLIAD 157 Query: 137 GGDIVFKGYRDGIVFL 152 GGD+ + L Sbjct: 158 GGDVELYDVEGDRLKL 173 >gi|224145825|ref|XP_002325778.1| predicted protein [Populus trichocarpa] gi|222862653|gb|EEF00160.1| predicted protein [Populus trichocarpa] Length = 55 Score = 40.5 bits (94), Expect = 0.097, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 4/50 (8%) Query: 137 GGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDI 186 GG + + IV + + G +G T++ V L +P + + Sbjct: 7 GGSLELVAIEEPIVKVRLTGPAAG----VMTVRVAVTQKLREKIPAIAAV 52 >gi|118358272|ref|XP_001012382.1| Papain family cysteine protease containing protein [Tetrahymena thermophila] gi|89294149|gb|EAR92137.1| Papain family cysteine protease containing protein [Tetrahymena thermophila SB210] Length = 325 Score = 40.5 bits (94), Expect = 0.10, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 51/135 (37%), Gaps = 24/135 (17%) Query: 52 ASVYFGYDFI--------TVGK---DQYDWEHL-RPPVLGMIMEHFISGDPIIHNGGLGD 99 + V F D I T K DQ D E + R V F DP + G Sbjct: 28 SRVEFTEDQIKMWKSFKQTYNKKYADQDDDEEVYRMNVF-FDNLEFTKKDPTM-----GV 81 Query: 100 MKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVF-LSMRGAC 158 K D+ +F E + I E +D+ ++P + DIV G V + +G C Sbjct: 82 TKFMDLTHTEFAELYLNPAENIDEEIDS-LQPI--QHNEDIVIDWVEKGAVTPVKNQGGC 138 Query: 159 SGCPSASETLKYGVA 173 GC S + T GV Sbjct: 139 GGCWSFATT--GGVE 151 >gi|14590230|ref|NP_142296.1| hypothetical protein PH0311 [Pyrococcus horikoshii OT3] gi|3256701|dbj|BAA29384.1| 176aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 176 Score = 40.5 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 ++ +++++KEV+D V V G K D V++ M GCP L+ Sbjct: 79 TEDEILEKLKEVIDPEVGVDVVNLGLIYELKVNPDNTVYIKMTMTTPGCPLTLWILRAVE 138 Query: 173 ANILNHFVPEVKDIR 187 +L +P VKD+ Sbjct: 139 EKVL--EIPGVKDVE 151 >gi|260578747|ref|ZP_05846654.1| GMP synthase [Corynebacterium jeikeium ATCC 43734] gi|258603045|gb|EEW16315.1| GMP synthase [Corynebacterium jeikeium ATCC 43734] Length = 247 Score = 40.2 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 33/158 (20%) Query: 18 PGQVVLVEGAIHFSN-----AKEAEISPL---ASRIFSIPGIASVYFGYDFITVGKD-QY 68 G VL F + E E PL + + S G+ V+ G T+ + Sbjct: 10 SGAEVLAAEYADFLSYSGLTPAELEQRPLDNPGADLGSFDGVEGVFIGGSPFTITRPVDV 69 Query: 69 DWEH-LRPPVLGMIME-------------HFISGDPIIHNGGLGDMKLDDMGSGDFIESD 114 +W+ + ++ I + S +G + + G+ + +D Sbjct: 70 EWQEAISQKLVDFIQVESERQRFGIFSTCYGTSMLAHYLDGEVNSQYSESAGTSEVSLTD 129 Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFL 152 + V I L +R G++D +V + Sbjct: 130 AGRVDPITAALPDRFT----------ALTGHKDSVVRV 157 >gi|326425084|ref|YP_004286307.1| hypothetical protein TPA2_gp66 [Tsukamurella phage TPA2] gi|323145736|gb|ADX31980.1| hypothetical protein [Tsukamurella phage TPA2] Length = 201 Score = 39.8 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 6/67 (8%) Query: 99 DMKLDDMGSGDFIESDSAVVQRIKE----VLDNRVRPAVARDGGDIVFKGYRDGIVFLSM 154 + +LD E +A+V ++++ VLD R + + R+ D F G DG V +S Sbjct: 119 NTELDQAYGTISREEYAALVTKVEQAKRMVLDERAQVSTLRE--DYEFSGASDGEVLVSY 176 Query: 155 RGACSGC 161 G C+GC Sbjct: 177 HGCCTGC 183 >gi|241889459|ref|ZP_04776760.1| oligoendopeptidase F [Gemella haemolysans ATCC 10379] gi|241864002|gb|EER68383.1| oligoendopeptidase F [Gemella haemolysans ATCC 10379] Length = 600 Score = 39.0 bits (90), Expect = 0.30, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 3/87 (3%) Query: 64 GKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA---VVQR 120 K +W L+P +L + E + + + KL+ + D+ +V Sbjct: 101 SKFDAEWSFLKPELLSIEEEVLREYVEELEDLKVYKFKLEKLNKKRPHTLDAEQERIVAM 160 Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRD 147 E LD A + D+ F+ D Sbjct: 161 AAEALDASDETFSALNNADVKFEEVED 187 >gi|296158707|ref|ZP_06841536.1| nitrogen-fixing NifU domain protein [Burkholderia sp. Ch1-1] gi|295890912|gb|EFG70701.1| nitrogen-fixing NifU domain protein [Burkholderia sp. Ch1-1] Length = 112 Score = 39.0 bits (90), Expect = 0.30, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 2/61 (3%) Query: 127 NRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKD 185 + + + G + DG+V + G C+GC T V L V V D Sbjct: 13 DALSKMIRAHAGGLELIDLSADGVVTVKYTGMCAGCQYRPVTTAGSVRPALL-AVAGVTD 71 Query: 186 I 186 + Sbjct: 72 V 72 >gi|124028107|ref|YP_001013427.1| hypothetical protein Hbut_1250 [Hyperthermus butylicus DSM 5456] gi|123978801|gb|ABM81082.1| universally conserved protein [Hyperthermus butylicus DSM 5456] Length = 136 Score = 39.0 bits (90), Expect = 0.30, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 9/79 (11%) Query: 115 SAVVQRIKEVLDNRVRPAV---ARDGGDI-VFKGYRDGIVFLSMRGACSGCPSA--SETL 168 + +++ + L N P + D G + K DG + + + GCP A TL Sbjct: 12 EEIRKKVVDALRNVYDPEIPVNVYDLGLVYDLKVTEDGKIKVRLGVTAPGCPVAYQIVTL 71 Query: 169 KYGVANILNHFVPEVKDIR 187 + VPE KD+ Sbjct: 72 A---EEAIRERVPEAKDVE 87 >gi|212224511|ref|YP_002307747.1| hypothetical protein TON_1360 [Thermococcus onnurineus NA1] gi|212009468|gb|ACJ16850.1| hypothetical protein, conserved [Thermococcus onnurineus NA1] Length = 176 Score = 39.0 bits (90), Expect = 0.33, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 16/142 (11%) Query: 51 IASVYFGYD---FITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGS 107 + + G D IT+ KD P + +++ I G + + D Sbjct: 20 VKGLEIGEDGSVTITLSKD-------TPDIDNVLIRLNTELQKIEGIGTITINRERDKQV 72 Query: 108 GDFIESDSAVV-QRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 D E ++ +++KEV+D + V G D V++ M GCP Sbjct: 73 DDNAEVTREMILEKLKEVIDPEIGVDVVNLGLIYELNIRPDKTVYVKMTMTTPGCP---- 128 Query: 167 TLKYGVANILNHFVPEVKDIRT 188 L + + + E+ ++ Sbjct: 129 -LTMWILRAVEDKILEIPGVKD 149 >gi|50084835|ref|YP_046345.1| putative metallo-beta lactamase [Acinetobacter sp. ADP1] gi|49530811|emb|CAG68523.1| conserved hypothetical protein; putative metallo-beta lactamase [Acinetobacter sp. ADP1] Length = 292 Score = 39.0 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 12/74 (16%) Query: 7 DTP--NPATLKFIPGQVVLVEGA----------IHFSNAKEAEISPLASRIFSIPGIASV 54 TP PA L ++ G V V F + + R++++P + Sbjct: 144 PTPGHTPACLSYVVGDAVFVGDTLFMPDYGTARCDFPKGSASILFDSVQRLYNLPDTTRM 203 Query: 55 YFGYDFITVGKDQY 68 + +D++ +D Y Sbjct: 204 FLCHDYLPSTRDDY 217 >gi|289648715|ref|ZP_06480058.1| HesB/YadR/YfhF:nitrogen-fixing NifU, C-terminal [Pseudomonas syringae pv. aesculi str. 2250] Length = 150 Score = 38.6 bits (89), Expect = 0.42, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 16/36 (44%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGY 145 + +DS + +RI L + P +A GG + Sbjct: 103 MVNADSPINERINYYLQTEINPGLASHGGQVTLIDV 138 >gi|145517009|ref|XP_001444393.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124411804|emb|CAK76996.1| unnamed protein product [Paramecium tetraurelia] Length = 4516 Score = 38.6 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 20/146 (13%) Query: 11 PATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKDQYDW 70 TL+F GQ +L+E + S L +IF G+ SV G + I K Sbjct: 3520 ENTLQF--GQPLLIENVYE--DIDSTIDSVLLKQIFKSAGVMSVRIGDNIIPYNK----- 3570 Query: 71 EHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKE----VLD 126 + + M +S P + + + D + + + + + Sbjct: 3571 ------LFNLFMTTKLSN-PHYTPEISTKVTIINFTITQSGLEDQLLEICVSKEQPNLEE 3623 Query: 127 NRVRPAVARDGGDIVFKGYRDGIVFL 152 + R + + + D I+ + Sbjct: 3624 EKNRQILQQHKNKQELQKIEDQILRV 3649 >gi|255546045|ref|XP_002514082.1| hypothetical protein RCOM_1046230 [Ricinus communis] gi|223546538|gb|EEF48036.1| hypothetical protein RCOM_1046230 [Ricinus communis] Length = 85 Score = 38.6 bits (89), Expect = 0.45, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 8/73 (10%) Query: 119 QRIKEVLDNRVRPAVARDGGDI-VFKGYRDGIVFLSMRGACSGCPSAS-ETLKYGVANIL 176 + +++VL +RP +A GG + D +V + + P+A T++ + L Sbjct: 18 ENVEKVLAE-IRPYLAGTGGGVLELVQIDDYVVKVRL-----SRPAAGVMTVRVALTQKL 71 Query: 177 NHFVPEVKDIRTV 189 +P + ++ + Sbjct: 72 RDKIPAIAAVQLI 84 >gi|14521854|ref|NP_127330.1| dTDP-4-keto-l-rhamnose reductase related [Pyrococcus abyssi GE5] gi|5459074|emb|CAB50560.1| Component of ring hydroxylating complex, putative [Pyrococcus abyssi GE5] Length = 176 Score = 38.6 bits (89), Expect = 0.45, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 2/87 (2%) Query: 101 KLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSG 160 K + + ++ +++++KEV+D + V G K D V++ M G Sbjct: 67 KREVKEEENVNLTEDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKMTMTTPG 126 Query: 161 CPSASETLKYGVANILNHFVPEVKDIR 187 CP L+ +L +P VKD+ Sbjct: 127 CPLTLWILRAVEEKVL--EIPGVKDVE 151 >gi|309804142|ref|ZP_07698220.1| conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] gi|308163725|gb|EFO65994.1| conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d] Length = 104 Score = 38.2 bits (88), Expect = 0.50, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVAN 174 +V ++ +V+D + + G DGI + M GCP A K + Sbjct: 9 DEIVAQLAKVIDPELNIDIVSLGLVYAIDLDEDGICLVQMMLTTMGCPLADVLAKMVIKQ 68 Query: 175 ILNHFVPEVKDI 186 + +PE+K++ Sbjct: 69 L--KNIPEIKNV 78 >gi|145526018|ref|XP_001448820.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124416386|emb|CAK81423.1| unnamed protein product [Paramecium tetraurelia] Length = 1229 Score = 38.2 bits (88), Expect = 0.56, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 20/146 (13%) Query: 11 PATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKDQYDW 70 TL+F GQ +L+E + S L +IF G+ SV G + I K Sbjct: 253 ENTLQF--GQPLLIENIYE--DVDSTIDSVLLKQIFKNAGVMSVRIGDNIIPYNK----- 303 Query: 71 EHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKE----VLD 126 + +P + + + D + + + + + Sbjct: 304 -----QFNLFMTTKLS--NPHYTPEISTKVTIINFTITQSGLEDQLLEICVSKEQPNLEE 356 Query: 127 NRVRPAVARDGGDIVFKGYRDGIVFL 152 + R + + + D I+ + Sbjct: 357 EKNRQILQQHKNKQELQKIEDQILRV 382 >gi|16263138|ref|NP_435931.1| hypothetical protein SMa1255 [Sinorhizobium meliloti 1021] gi|14523801|gb|AAK65343.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] Length = 103 Score = 38.2 bits (88), Expect = 0.60, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 8/88 (9%) Query: 106 GSGDFIESDSAVVQRIKEVLDNRVRPAVAR---DGGDIVFKGYRDG-IVFLSMRGACSGC 161 ++ V I++ L + P + R D G I DG I ++M GC Sbjct: 4 AEAMSEPENATVCDSIRDALRMIIDPELGRNIVDLGLIYDVSVEDGGIAHVTMTTTTKGC 63 Query: 162 PSASETLKYGVANILNHFVPEVK--DIR 187 P++ LK V N + +VP V+ ++R Sbjct: 64 PASEY-LKEAVRNCV-WYVPGVEYAEVR 89 >gi|296270586|ref|YP_003653218.1| hypothetical protein Tbis_2624 [Thermobispora bispora DSM 43833] gi|296093373|gb|ADG89325.1| hypothetical protein Tbis_2624 [Thermobispora bispora DSM 43833] Length = 412 Score = 37.9 bits (87), Expect = 0.63, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180 +++ ++ V A R G DG + +R A GC +++ ++ V + Sbjct: 81 VRDRVEEAVGRAARRLGVTAELAALADGAARVRVRAA--GCGPSADAVRAAVEEAVRDAA 138 Query: 181 PEVKDIR 187 PE++ + Sbjct: 139 PEIERVE 145 >gi|261400653|ref|ZP_05986778.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain protein [Neisseria lactamica ATCC 23970] gi|269209560|gb|EEZ76015.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain protein [Neisseria lactamica ATCC 23970] Length = 1741 Score = 37.9 bits (87), Expect = 0.72, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 8/90 (8%) Query: 74 RPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAV 133 +P VL I ++F I +GD D++ F SD Q+I E+L + Sbjct: 467 KPDVLADITDNFREQAGIEFRQFIGDNARDNLSYEVFEASDGIKKQKIDELLHRELD--- 523 Query: 134 ARDGGDIVFKG----YRDGIVFLSMRG-AC 158 + GG +VF G D +L +G AC Sbjct: 524 HQRGGAVVFVGRRKSAEDYNEYLQKQGWAC 553 >gi|18976660|ref|NP_578017.1| hypothetical protein PF0288 [Pyrococcus furiosus DSM 3638] gi|18892233|gb|AAL80412.1| hypothetical protein PF0288 [Pyrococcus furiosus DSM 3638] Length = 211 Score = 37.9 bits (87), Expect = 0.79, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 11/138 (7%) Query: 51 IASVYFGYDFITVG-KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGD 109 + S+ D I + K++ D L + + E + G + G + + K +++ + Sbjct: 59 VESLEIEGDVIKIRFKEKIDDATL-LEIYNKLRE--LEGIRQVEIGFVRETKDENLEITE 115 Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLK 169 +++++KEV+D + V G K D V++ M GCP L+ Sbjct: 116 -----EMILEKLKEVIDPEIGMDVVNLGLIYELKINPDKTVYIKMTMTTPGCPLTLWLLR 170 Query: 170 YGVANILNHFVPEVKDIR 187 +L +P V+D+ Sbjct: 171 AVEEKVL--EIPGVRDVE 186 >gi|304320256|ref|YP_003853899.1| hypothetical protein PB2503_03407 [Parvularcula bermudensis HTCC2503] gi|303299158|gb|ADM08757.1| hypothetical protein PB2503_03407 [Parvularcula bermudensis HTCC2503] Length = 305 Score = 37.9 bits (87), Expect = 0.79, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 12/76 (15%) Query: 8 TP--NPATLKFIPGQVVLVEGAI----------HFSNAKEAEISPLASRIFSIPGIASVY 55 TP PA + ++ G + V I F + R+F +P ++ Sbjct: 160 TPGHTPACMSYLIGDALFVGDTIFMPDYGTARCDFPGGDAVTLYRSIRRLFQLPDETRMF 219 Query: 56 FGYDFITVGKDQYDWE 71 +D+ + +D Y WE Sbjct: 220 LCHDYKSETRDHYAWE 235 >gi|91217113|ref|ZP_01254075.1| putative outer membrane protein [Psychroflexus torquis ATCC 700755] gi|91184713|gb|EAS71094.1| putative outer membrane protein [Psychroflexus torquis ATCC 700755] Length = 1704 Score = 37.9 bits (87), Expect = 0.80, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 41/129 (31%), Gaps = 13/129 (10%) Query: 10 NPATLKFIPGQVVLVEGAIHF-SNAKEAEIS-PLASRIFSIPGIASVYFGYDFI----TV 63 N L+FIP Q + F + E + P ++F V DFI ++ Sbjct: 83 NGNRLRFIPKQKLQPATTYQFNLDLSELYENLPKEDKVFQFKFETIV---PDFIIGLQSI 139 Query: 64 GKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKE 123 DW+++ + + + I D+ SD+ + + + Sbjct: 140 QSYDADWQYISAEIEASDVLSLEN----IKKSISAQQNDSDLDVRFLTTSDANYFELVID 195 Query: 124 VLDNRVRPA 132 + + Sbjct: 196 SIYREKDDS 204 >gi|227903061|ref|ZP_04020866.1| metal-sulfur cluster biosynthetic protein [Lactobacillus acidophilus ATCC 4796] gi|227869194|gb|EEJ76615.1| metal-sulfur cluster biosynthetic protein [Lactobacillus acidophilus ATCC 4796] Length = 191 Score = 37.5 bits (86), Expect = 0.88, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 5/78 (6%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARD---GGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 E +V +I L + P + D G I + M SGCP + Sbjct: 5 MKEEKIKLVDQIMTALQKVIDPELQVDIVNLGLIYGIDIDGDKATIQMTLTISGCPLSDY 64 Query: 167 TLKYGVANILNHFVPEVK 184 L+ + + VPE+K Sbjct: 65 -LQKEIQKAVL-SVPEIK 80 >gi|58336509|ref|YP_193094.1| hypothetical protein LBA0162 [Lactobacillus acidophilus NCFM] gi|58253826|gb|AAV42063.1| hypothetical protein LBA0162 [Lactobacillus acidophilus NCFM] Length = 187 Score = 37.5 bits (86), Expect = 0.89, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 5/78 (6%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARD---GGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 E +V +I L + P + D G I + M SGCP + Sbjct: 1 MKEEKIKLVDQIMTALQKVIDPELQVDIVNLGLIYGIDIDGDKATIQMTLTISGCPLSDY 60 Query: 167 TLKYGVANILNHFVPEVK 184 L+ + + VPE+K Sbjct: 61 -LQKEIQKAVL-SVPEIK 76 >gi|327402311|ref|YP_004343149.1| von Willebrand factor type D protein [Fluviicola taffensis DSM 16823] gi|327317819|gb|AEA42311.1| von Willebrand factor type D protein [Fluviicola taffensis DSM 16823] Length = 618 Score = 37.5 bits (86), Expect = 0.90, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 24/67 (35%) Query: 56 FGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDS 115 G DF ++ K+ W+ +R L ME P + +M + + Sbjct: 27 LGSDFQSIRKEMVAWDAVRGEWLASSMEAMADKKPTPDRNFPEEYTPAEMFNAMPTATQE 86 Query: 116 AVVQRIK 122 V +I+ Sbjct: 87 KVRGQIQ 93 >gi|327182706|gb|AEA31153.1| hypothetical protein LAB52_00830 [Lactobacillus amylovorus GRL 1118] Length = 193 Score = 37.5 bits (86), Expect = 0.96, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 4/70 (5%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARD---GGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 E +V +I VL + P + D G I + M SGCP ++ Sbjct: 1 MKEEKIELVDQIMTVLQKVIDPELQVDIVNLGLIYGIDIDGTKATVKMTLTISGCPLSTY 60 Query: 167 TLKYGVANIL 176 L+ + + Sbjct: 61 -LQDHIKQAV 69 >gi|310877199|gb|ADP36960.1| hypothetical protein [Asterochloris sp. DA2] Length = 74 Score = 37.1 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 9/77 (11%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 +SA R+ LD +RPA+ GG + G + G P G+ Sbjct: 7 DNSASKGRVNTHLD-MLRPAIQSYGGKVDVLSVEAGKCIVHFEG-----PPPIG---EGI 57 Query: 173 ANILNHFVPEVKDIRTV 189 + P+++ + V Sbjct: 58 KAAIKDKFPDLQAVELV 74 >gi|261379087|ref|ZP_05983660.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain protein [Neisseria cinerea ATCC 14685] gi|269144466|gb|EEZ70884.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain protein [Neisseria cinerea ATCC 14685] Length = 1736 Score = 37.1 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 8/90 (8%) Query: 74 RPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAV 133 +P VL I ++F I +GD D++ F SD Q+I E+L + Sbjct: 467 KPDVLADITDNFREQAGIEFRQFIGDNARDNLSYEVFEASDGIKKQKIDELLHRELD--- 523 Query: 134 ARDGGDIVFKG----YRDGIVFLSMRG-AC 158 + GG +VF G +L +G AC Sbjct: 524 HQRGGAVVFVGRRKSAEGYNKYLQKQGWAC 553 >gi|315453783|ref|YP_004074053.1| nifU protein-like protein [Helicobacter felis ATCC 49179] gi|315132835|emb|CBY83463.1| nifU protein homolog [Helicobacter felis ATCC 49179] Length = 284 Score = 37.1 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 3/58 (5%) Query: 94 NGGLGDMKLDDMGSGDFIESDSAVVQRIK---EVLDNRVRPAVARDGGDIVFKGYRDG 148 K SG+ D +VQ++K + +D +RP + DGG++ ++G Sbjct: 224 EEQQLKEKAQKSLSGNLAFVDMTMVQKVKAIDQTIDVHIRPMLMMDGGNLEILDIKEG 281 >gi|327290050|ref|XP_003229737.1| PREDICTED: EMILIN-1-like, partial [Anolis carolinensis] Length = 774 Score = 37.1 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 13/100 (13%) Query: 92 IHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGI-- 149 + G D + E+ + + + ++ LDNR+ +GG R + Sbjct: 153 VEASLNGKQPADAAAHPEMKETLNEIQRHLQR-LDNRISD--QENGGGSTGSDVRGEVLR 209 Query: 150 -VFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 V ++G+C+ C GV + + + +R Sbjct: 210 EVERRLQGSCASC-------LAGVEGLQRQQAEDRERMRA 242 >gi|242398120|ref|YP_002993544.1| hypothetical protein TSIB_0127 [Thermococcus sibiricus MM 739] gi|242264513|gb|ACS89195.1| hypothetical protein TSIB_0127 [Thermococcus sibiricus MM 739] Length = 108 Score = 37.1 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + V++++KEV+D + V G K D V++ M GCP + L V Sbjct: 11 TKEMVLEKLKEVIDPEIGIDVVNLGLIYELKINPDNTVYVKMTMTTPGCPL-TMWLLQAV 69 Query: 173 ANILNHFVPEVKDIR 187 + +P VKD Sbjct: 70 EQKILE-IPGVKDAE 83 >gi|321448990|gb|EFX61677.1| hypothetical protein DAPPUDRAFT_272249 [Daphnia pulex] Length = 197 Score = 36.7 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 27/102 (26%), Gaps = 14/102 (13%) Query: 65 KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEV 124 +D +W+ I SG P + + EV Sbjct: 100 RDDAEWDDWPDEPEDSIEIQPSSGQPAEKEASVASQEAIQPDPVQINPP---------EV 150 Query: 125 LDNRVRPAVARDGGDIVFK----GYRDGIVFL-SMRGACSGC 161 ++ ++P R G F V L +R C C Sbjct: 151 VETPLQPITTRAGRKCSFDLTSFDLTSSYVRLSRLRKGCGVC 192 >gi|329945959|ref|ZP_08293646.1| hypothetical protein HMPREF9056_01535 [Actinomyces sp. oral taxon 170 str. F0386] gi|328528407|gb|EGF55385.1| hypothetical protein HMPREF9056_01535 [Actinomyces sp. oral taxon 170 str. F0386] Length = 380 Score = 36.7 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 9/78 (11%) Query: 116 AVVQRIKEVLDNRVRPAVAR---DGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKYG 171 + E LD + P + R D G + DG+V + + +GCP LK Sbjct: 4 PTHDAVMEALDRVIDPELRRPVTDLGMVSSVDIAEDGVVSVEVLLTVAGCP-----LKDT 58 Query: 172 VANILNHFVPEVKDIRTV 189 + V V+ + V Sbjct: 59 ITADTRREVGSVEGVTDV 76 >gi|253733323|ref|ZP_04867488.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH130] gi|253728675|gb|EES97404.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH130] gi|302751260|gb|ADL65437.1| Scaffold protein Nfu/NifU N terminal [Staphylococcus aureus subsp. aureus str. JKD6008] gi|320140324|gb|EFW32181.1| conserved domain protein [Staphylococcus aureus subsp. aureus MRSA131] Length = 69 Score = 36.7 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 41 LASRIFSIPGIASVYFGYDFITVGKD-QYDWEHLRPPVLGM 80 + I + G+ S++ DFI+V K+ +WE + P V + Sbjct: 27 FINDILKVEGVKSIFHVMDFISVDKENDANWETVLPKVEAV 67 >gi|315037403|ref|YP_004030971.1| hypothetical protein LA2_00895 [Lactobacillus amylovorus GRL 1112] gi|325955873|ref|YP_004286483.1| hypothetical protein LAC30SC_00760 [Lactobacillus acidophilus 30SC] gi|312275536|gb|ADQ58176.1| hypothetical protein LA2_00895 [Lactobacillus amylovorus GRL 1112] gi|325332438|gb|ADZ06346.1| hypothetical protein LAC30SC_00760 [Lactobacillus acidophilus 30SC] Length = 193 Score = 36.7 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 4/70 (5%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARD---GGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 E +V +I L + P + D G I + M SGCP ++ Sbjct: 1 MKEEKIELVDQIMTALQKVIDPELQVDIVNLGLIYGIDIEGTKATVKMTLTISGCPLSTY 60 Query: 167 TLKYGVANIL 176 L+ + + Sbjct: 61 -LQDHIKQAV 69 >gi|302420601|ref|XP_003008131.1| extracellular cell wall glucanase Crf1 [Verticillium albo-atrum VaMs.102] gi|261353782|gb|EEY16210.1| extracellular cell wall glucanase Crf1 [Verticillium albo-atrum VaMs.102] Length = 534 Score = 36.7 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 56/167 (33%), Gaps = 39/167 (23%) Query: 9 PNPA-----TLKF--IPGQVVLVE--GAIHFSNAKEAE-------ISPLASRIFSIPG-- 50 PNPA T F P + + G I FS+ A SP F G Sbjct: 38 PNPALGMAHTFNFNATPSKDLWETHVGPISFSDKDGAAFTITKQGDSPTLRSHFYFFGGR 97 Query: 51 -------------IASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGL 97 I+SV +++ D+ DWE + + +F G I G Sbjct: 98 TEIILKAAAGKGIISSVM----WLSDTLDEVDWEFVGVNSTTALSNYFGKGKEIFTEGKD 153 Query: 98 GDMKLDDMGSGDFIESDSAVVQRIKEVLDNR----VRPAVARDGGDI 140 + + + + R++ +D + + A A +GG++ Sbjct: 154 HPVAGAPVWDDFHNYTTTWTEDRLEWFIDGQSVRVLNRADALEGGNL 200 >gi|332158570|ref|YP_004423849.1| dTDP-4-keto-l-rhamnose reductase related protein [Pyrococcus sp. NA2] gi|331034033|gb|AEC51845.1| dTDP-4-keto-l-rhamnose reductase related protein [Pyrococcus sp. NA2] Length = 174 Score = 36.7 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 5/111 (4%) Query: 79 GMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGG 138 +++ + I + ++ ++ +++++KEV+D + V G Sbjct: 43 STLLKIYNKVREIEGVKQIEIGFKREIKETSVKVTEDMILEKLKEVIDPEIGIDVVNLGL 102 Query: 139 DIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 K D V++ M GCP TL + + V EV +R V Sbjct: 103 IYELKINPDNTVYIKMTMTTPGCP---LTL--WILRAVEEKVLEVPGVRDV 148 >gi|307305143|ref|ZP_07584892.1| protein of unknown function DUF59 [Sinorhizobium meliloti BL225C] gi|46403695|gb|AAS92901.1| hypothetical protein [Sinorhizobium meliloti] gi|306902483|gb|EFN33078.1| protein of unknown function DUF59 [Sinorhizobium meliloti BL225C] Length = 97 Score = 36.7 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%) Query: 112 ESDSAVVQRIKEVLDNRVRPAVAR---DGGDIVFKGYRDG-IVFLSMRGACSGCPSASET 167 ++ V I++ L + P + R D G I DG I ++M GCP++ Sbjct: 4 PENATVCDSIRDALRMIIDPELGRNIVDLGLIYDVSVEDGGIAHVTMTTTTKGCPASEY- 62 Query: 168 LKYGVANILNHFVPEVK--DIR 187 LK V N + +VP V+ ++R Sbjct: 63 LKEAVRNCV-WYVPGVEYAEVR 83 >gi|309379197|emb|CBX22154.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 1741 Score = 36.3 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 8/90 (8%) Query: 74 RPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAV 133 +P VL I ++F I +GD D++ F SD Q+I E+L + Sbjct: 467 KPDVLADITDNFREQAGIEFRQFIGDNARDNLSYEVFEASDGIKKQKIDELLHRELD--- 523 Query: 134 ARDGGDIVFKG----YRDGIVFLSMRG-AC 158 + GG +VF G +L +G AC Sbjct: 524 HQSGGAVVFVGRRKSAEGYNEYLQKQGWAC 553 >gi|292492898|ref|YP_003528337.1| hypothetical protein Nhal_2887 [Nitrosococcus halophilus Nc4] gi|291581493|gb|ADE15950.1| protein of unknown function DUF59 [Nitrosococcus halophilus Nc4] Length = 101 Score = 36.3 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 2/74 (2%) Query: 113 SDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 + + EV+D +V ++ D G + G V + M CP ++ G+ Sbjct: 2 DQDKLTVALHEVVDPKVGVSII-DLGLVYHIQVEGGRVDIRMTMTTPACPLPES-IRMGM 59 Query: 173 ANILNHFVPEVKDI 186 + +PE+ ++ Sbjct: 60 ETAIQRHLPEITEV 73 >gi|255086373|ref|XP_002509153.1| predicted protein [Micromonas sp. RCC299] gi|226524431|gb|ACO70411.1| predicted protein [Micromonas sp. RCC299] Length = 1027 Score = 36.3 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 3/81 (3%) Query: 77 VLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARD 136 VL H + D ++ + E++ ++ I + LD V A D Sbjct: 83 VLATYRAHVAAEDEVVLPALAARVSNVAHAYELEHEAEDSLFDGITQALDEAVELIAAND 142 Query: 137 GGDIVFKGYRDGIVFLSMRGA 157 GG ++GA Sbjct: 143 GGGPAPTDAEG---RERLQGA 160 >gi|15895944|ref|NP_349293.1| maltodextrin glucosidase [Clostridium acetobutylicum ATCC 824] gi|15025718|gb|AAK80633.1|AE007766_6 Possible maltodextrin glucosidase [Clostridium acetobutylicum ATCC 824] gi|325510096|gb|ADZ21732.1| putative maltodextrin glucosidase [Clostridium acetobutylicum EA 2018] Length = 451 Score = 36.3 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 33 AKEAEISPLASRIFSIPGIASVYFGYDF-ITVGKDQYDWEHLRPPVL 78 A I P+ + +F+IPGI S+Y+G DF IT K ++LRP + Sbjct: 292 IDAANIYPIYTILFTIPGIPSIYYGSDFGITGVKQNNSDKYLRPRLK 338 >gi|312375045|gb|EFR22490.1| hypothetical protein AND_15185 [Anopheles darlingi] Length = 638 Score = 36.3 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 5/87 (5%) Query: 85 FISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIK----EVLDNRVRPAVARDGGDI 140 + S I D G D ++ ++ + +K E+ + P GD Sbjct: 428 YSSELTKIVTEARKSTSADGNGVDDELQGNTIIETNVKKDDGELCPSTHFPVGQEVMGDC 487 Query: 141 VFKGYRDGIVFLSMRGACSGCPSASET 167 F + V L + GA +GCP A++T Sbjct: 488 PFVSTEE-KVDLLLAGAMAGCPMAAKT 513 >gi|313668408|ref|YP_004048692.1| DNA helicase [Neisseria lactamica ST-640] gi|313005870|emb|CBN87326.1| putative DNA helicase [Neisseria lactamica 020-06] Length = 1741 Score = 36.3 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 8/90 (8%) Query: 74 RPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAV 133 +P VL I ++F I +GD D++ F SD Q+I E+L + Sbjct: 467 KPDVLADITDNFREQAGIEFRQFIGDNARDNLSYEVFEASDGIKKQKIDELLHRELD--- 523 Query: 134 ARDGGDIVFKG----YRDGIVFLSMRG-AC 158 + GG +VF G +L +G AC Sbjct: 524 HQRGGAVVFVGRRKSAEGYNEYLQKQGWAC 553 >gi|296314120|ref|ZP_06864061.1| ATP-dependent DNA helicase, UvrD/REP family [Neisseria polysaccharea ATCC 43768] gi|296839271|gb|EFH23209.1| ATP-dependent DNA helicase, UvrD/REP family [Neisseria polysaccharea ATCC 43768] Length = 1277 Score = 36.3 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 8/90 (8%) Query: 74 RPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAV 133 +P VL I ++F I +GD D++ F SD Q+I E+L + Sbjct: 467 KPDVLADITDNFREQAGIEFRQFIGDNARDNLSYEVFEASDGIKKQKIDELLHRELD--- 523 Query: 134 ARDGGDIVFKG----YRDGIVFLSMRG-AC 158 + GG +VF G +L +G AC Sbjct: 524 HQRGGAVVFVGRRKSAEGYNEYLQKQGWAC 553 >gi|115523965|ref|YP_780876.1| cation diffusion facilitator family transporter [Rhodopseudomonas palustris BisA53] gi|115517912|gb|ABJ05896.1| cation diffusion facilitator family transporter [Rhodopseudomonas palustris BisA53] Length = 460 Score = 36.3 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 14/126 (11%) Query: 68 YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDN 127 D + + I + F + + + + +L V IK+ L Sbjct: 336 VDAHDIAHALEHNIRDEFGADVEVDTHIEPLEPELPHGADAAPTR-----VAEIKQALSR 390 Query: 128 RVRPAVARDGGDIVFKGYRDG-IVFLSMRGACSGCPS-ASETLKYG---VANILNHFVPE 182 +V + + G IV C PS + T+ + L P Sbjct: 391 FASDSVIHHIHSVRVRDTDAGEIVNFH----CYAAPSMSVITVHEHCDDIERELRRAYPS 446 Query: 183 VKDIRT 188 VK + + Sbjct: 447 VKRVIS 452 >gi|315231095|ref|YP_004071531.1| aromatic ring hydroxylating enzyme [Thermococcus barophilus MP] gi|315184123|gb|ADT84308.1| aromatic ring hydroxylating enzyme [Thermococcus barophilus MP] Length = 107 Score = 36.3 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 2/81 (2%) Query: 107 SGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 + + S A+++++KEV+D + V G + D V++ M GCP Sbjct: 4 AEEVKLSKEAILEKLKEVVDPEIGIDVVNLGLIYELEIRPDNTVYVKMTMTTPGCPLTMW 63 Query: 167 TLKYGVANILNHFVPEVKDIR 187 LK IL +P VKD Sbjct: 64 LLKAVEEKIL--EIPGVKDAE 82 >gi|307595867|ref|YP_003902184.1| hypothetical protein Vdis_1759 [Vulcanisaeta distributa DSM 14429] gi|307551068|gb|ADN51133.1| protein of unknown function DUF59 [Vulcanisaeta distributa DSM 14429] Length = 153 Score = 36.3 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 3/103 (2%) Query: 86 ISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKG 144 +S + +I + + + + +++ ++ V D + P D G I Sbjct: 3 VSNEEVIGTTNNEETEEPIFKTNLPNDKVKELIEILRNVYDPEI-PINVYDLGLIYEVMM 61 Query: 145 YRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 D +V + M GCP + L Y V + +P+ KDI Sbjct: 62 DNDKVVHVKMTLTAVGCPLSEN-LGYQVGAAIQQAIPDAKDIE 103 >gi|322383508|ref|ZP_08057283.1| lyase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152220|gb|EFX45051.1| lyase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 364 Score = 35.9 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 23 LVEGAI-HFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK-DQYDWEHLRPPVLGM 80 L +G + F+ + R+ IP + SV+ DFI + + + DW+ +L Sbjct: 9 LPKGKMYSFTREERNSAPGYIRRLLDIPDVKSVFQVTDFIALDRTPKGDWK----QILAA 64 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMG 106 E F + + D ++ Sbjct: 65 AREVFGESGVSVEDAAAQDSGYGEVT 90 >gi|227894220|ref|ZP_04012025.1| metal-sulfur cluster biosynthetic protein [Lactobacillus ultunensis DSM 16047] gi|227863940|gb|EEJ71361.1| metal-sulfur cluster biosynthetic protein [Lactobacillus ultunensis DSM 16047] Length = 197 Score = 35.9 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 4/70 (5%) Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARD---GGDIVFKGYRDGIVFLSMRGACSGCPSASE 166 E +V RI L + P + D G I + M SGCP +S Sbjct: 5 MKEEKIELVDRIMTALQKVIDPELQVDIVNLGLIYGINIEGKKATVKMTLTISGCPLSSY 64 Query: 167 TLKYGVANIL 176 L+ + + Sbjct: 65 -LQEQIQKAV 73 >gi|326796005|ref|YP_004313825.1| beta-lactamase [Marinomonas mediterranea MMB-1] gi|326546769|gb|ADZ91989.1| beta-lactamase domain protein [Marinomonas mediterranea MMB-1] Length = 291 Score = 35.9 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 4/65 (6%) Query: 12 ATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKDQYDWE 71 TL F+P F + + RIF++P ++ +D+ G+D+Y WE Sbjct: 166 DTL-FMPD---YGTARCDFPGGDASTLYRSIQRIFALPDSTRLFMCHDYKAPGRDEYQWE 221 Query: 72 HLRPP 76 Sbjct: 222 TTVAE 226 >gi|14764516|gb|AAK72104.1| putative Hs1pro-1-like protein [Cicer arietinum] Length = 268 Score = 35.5 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 10/84 (11%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETL 168 + D V+RI ++L + D GD F ++ LSM+ +C S Sbjct: 83 EKAAEDCYTVERIWKLLTEVEDVHLMMDPGD--FLKLKN---QLSMKSSCYETASFCMRS 137 Query: 169 KYGVANI-----LNHFVPEVKDIR 187 K V L H VPE+ D+ Sbjct: 138 KELVEVTKMCRDLRHRVPEILDVE 161 >gi|325967732|ref|YP_004243924.1| phenylacetic acid degradation protein [Vulcanisaeta moutnovskia 768-28] gi|323706935|gb|ADY00422.1| phenylacetic acid degradation protein [Vulcanisaeta moutnovskia 768-28] Length = 157 Score = 35.5 bits (81), Expect = 3.6, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 3/103 (2%) Query: 86 ISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDI-VFKG 144 +S + I ++ + + + + +++ ++ V D + P D G I Sbjct: 3 VSNEEITNSTNNENDEEPIFKTNLPSDKTKELIEILRNVYDPEI-PIDVYDLGLIYEVML 61 Query: 145 YRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 D +V + M GCP + L Y V + +P+ KDI Sbjct: 62 DNDKVVHVKMTLTAVGCPLSEN-LGYQVGAAIQQAIPDAKDIE 103 >gi|327540715|gb|EGF27285.1| heavy metal efflux pump, CzcA family [Rhodopirellula baltica WH47] Length = 1171 Score = 35.5 bits (81), Expect = 3.7, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 13/86 (15%) Query: 31 SNAKEAEISPLASRIFSIPGIASV----YFGYDFITVG-KDQYD--WEHLRPPVLGMIME 83 + ++ PL+ + ++PG SV FGY F+ V KD+ D W + E Sbjct: 59 KDIEDQVTYPLSVSLLAVPGAESVRGKSMFGYSFVQVTFKDEIDFYWA------RSRVSE 112 Query: 84 HFISGDPIIHNGGLGDMKLDDMGSGD 109 S + +G + + D G G Sbjct: 113 QLGSAASQLPDGVVPQLGPDATGLGQ 138 >gi|310643486|ref|YP_003948244.1| glucose-specific phosphotransferase enzyme iia component [Paenibacillus polymyxa SC2] gi|309248436|gb|ADO58003.1| Glucose-specific phosphotransferase enzyme IIA component [Paenibacillus polymyxa SC2] Length = 681 Score = 35.2 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 3/86 (3%) Query: 71 EHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVR 130 E + PV G +++ DP+ GD G + S V ++ V ++ Sbjct: 533 EDIVMPVNGELVDISTVPDPVFAERMTGDGFAVVPNDGTIV---SPVYGKVFNVFPSKHA 589 Query: 131 PAVARDGGDIVFKGYRDGIVFLSMRG 156 + DGG V V L +G Sbjct: 590 VGIQSDGGKEVLVHIGVNTVKLKGQG 615 >gi|332877126|ref|ZP_08444877.1| hypothetical protein HMPREF9074_00603 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685016|gb|EGJ57862.1| hypothetical protein HMPREF9074_00603 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1225 Score = 35.2 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 65 KDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEV 124 K ++DW+ + P V + P + + + ESD A V++I++ Sbjct: 204 KAEFDWKFVEPEVYEVYTAKKNVLKPQLEAADEAGY-TNYAKYKELYESDKATVEQIEDA 262 Query: 125 LDN 127 + Sbjct: 263 AEE 265 >gi|119873332|ref|YP_931339.1| hypothetical protein Pisl_1848 [Pyrobaculum islandicum DSM 4184] gi|119674740|gb|ABL88996.1| protein of unknown function DUF59 [Pyrobaculum islandicum DSM 4184] Length = 131 Score = 35.2 bits (80), Expect = 4.3, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 116 AVVQRIKEVLDNRVRPAV---ARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172 V++I EVL P + D G I DGI+ ++M GCP A + V Sbjct: 14 EKVKKIIEVLREVYDPEIPINVYDLGLIRKVVLEDGILKVTMTLTAVGCPVAGSVAQE-V 72 Query: 173 ANILNHFVPEVKDIR 187 L +PE KD+ Sbjct: 73 GYALQTVMPEAKDVE 87 >gi|288960863|ref|YP_003451203.1| glutamate dehydrogenase [Azospirillum sp. B510] gi|288913171|dbj|BAI74659.1| glutamate dehydrogenase [Azospirillum sp. B510] Length = 1609 Score = 35.2 bits (80), Expect = 4.4, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 14/98 (14%) Query: 47 SIPGIASVYFG----------YDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGG 96 ++ G+ASVYFG D + K W+ + I++ + + Sbjct: 1497 AVEGVASVYFGLGRRFGLEWLRDRASTAKVDNHWQ---RQAVAAIVDDLFAHQSALTVRV 1553 Query: 97 LGDMKLDDMGSGDFIESDSAVVQRIKEVL-DNRVRPAV 133 L + +I S VV+R++++L + R +PAV Sbjct: 1554 LESAGDEASAVDGWIASRKLVVERVEQLLAELRAQPAV 1591 >gi|288871521|ref|ZP_06117919.2| putative lipoprotein [Clostridium hathewayi DSM 13479] gi|288863127|gb|EFC95425.1| putative lipoprotein [Clostridium hathewayi DSM 13479] Length = 796 Score = 35.2 bits (80), Expect = 4.5, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 13/116 (11%) Query: 22 VLVEGAIHFSNAKE-AEISPLASRIFSIPGIASVYFGYDFITVGKDQYDWEHLRPPVLGM 80 V+ +G F+ ++ AE +P +++ P I Y DF + D +W+ LR + Sbjct: 251 VIEQGQ--FTTLEQKAETNPNIRKLYGAPFI---YLWGDF-AISADDINWQALRMSLSSP 304 Query: 81 IMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARD 136 ME+F+S + NG L ++ D++ K V+ + + + RD Sbjct: 305 AMEYFLSFAGRLENGQEFTAVLKEIQGQDYVAEYQ------KNVICSYISQLLKRD 354 >gi|207110188|ref|ZP_03244350.1| conserved hypothetical nifU-like protein [Helicobacter pylori HPKX_438_CA4C1] Length = 45 Score = 35.2 bits (80), Expect = 4.9, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSM 154 SD + + ++ V++ ++RP + +DGG+I G + +++++ Sbjct: 1 MIEFSDEDLQKPVRIVIE-KIRPYLLKDGGNIEVLGVKSMKIYVAL 45 >gi|223939589|ref|ZP_03631464.1| hypothetical protein Cflav_PD1433 [bacterium Ellin514] gi|223891747|gb|EEF58233.1| hypothetical protein Cflav_PD1433 [bacterium Ellin514] Length = 380 Score = 35.2 bits (80), Expect = 5.0, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 3/53 (5%) Query: 21 VVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKDQYDWEHL 73 L +N + + + +F G G D IT+ +D WEH+ Sbjct: 124 PPLGTSPAKLTNTSKPSTTEIPEAVFHFKGTID---GSDKITITRDGALWEHV 173 >gi|240102430|ref|YP_002958739.1| Component of ring hydroxylating complex, putative [Thermococcus gammatolerans EJ3] gi|239909984|gb|ACS32875.1| Component of ring hydroxylating complex, putative [Thermococcus gammatolerans EJ3] Length = 176 Score = 35.2 bits (80), Expect = 5.1, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 5/88 (5%) Query: 101 KLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSG 160 + + +G+ ++ +++++KEV+D + V G K D V++ M G Sbjct: 67 EREVKEAGNVKITEEMILEKLKEVIDPEIGIDVVNLGLIYEVKVNPDNTVYVKMTMTTPG 126 Query: 161 CPSASETLKYGVANILNHFVPEVKDIRT 188 CP L + + + E+ ++ Sbjct: 127 CP-----LTMWILRAVEDKILEIPGVKD 149 >gi|146311060|ref|YP_001176134.1| CRISPR-associated helicase Cas3 family protein [Enterobacter sp. 638] gi|145317936|gb|ABP60083.1| CRISPR-associated helicase, Cas3 family [Enterobacter sp. 638] Length = 1072 Score = 35.2 bits (80), Expect = 5.1, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 6/52 (11%) Query: 24 VEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKDQYDWEHLRP 75 + H K+A SP +F + G + + G DF DW + P Sbjct: 792 PQHIWHLPEVKQALASPFQHHLFVVVGTSVLEVGRDF------DADWGIIEP 837 >gi|326774170|ref|ZP_08233452.1| ATP-binding protein [Actinomyces viscosus C505] gi|326636309|gb|EGE37213.1| ATP-binding protein [Actinomyces viscosus C505] Length = 380 Score = 34.8 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 9/79 (11%) Query: 115 SAVVQRIKEVLDNRVRPAVAR---DGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKY 170 + E L + P + R D G + DG+V + + +GCP LK Sbjct: 3 QPTHDAVMEALARVIDPELHRPITDLGMVSTVDIAEDGVVSVEVLLTVAGCP-----LKD 57 Query: 171 GVANILNHFVPEVKDIRTV 189 + V V+ + V Sbjct: 58 TITADTRREVGTVEGVTEV 76 >gi|325068249|ref|ZP_08126922.1| ATPase-like, ParA/MinD [Actinomyces oris K20] Length = 380 Score = 34.4 bits (78), Expect = 6.9, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 9/79 (11%) Query: 115 SAVVQRIKEVLDNRVRPAVAR---DGGDIVFKGY-RDGIVFLSMRGACSGCPSASETLKY 170 + E L + P + R D G + DG+V + + +GCP LK Sbjct: 3 QPTHDAVMEALARVIDPELHRPITDLGMVSTVDIAEDGVVSVEVLLTVAGCP-----LKD 57 Query: 171 GVANILNHFVPEVKDIRTV 189 + V V+ + V Sbjct: 58 TITADTRREVSTVEGVTEV 76 >gi|295400185|ref|ZP_06810165.1| phenylacetate-CoA oxygenase, PaaJ subunit [Geobacillus thermoglucosidasius C56-YS93] gi|294977964|gb|EFG53562.1| phenylacetate-CoA oxygenase, PaaJ subunit [Geobacillus thermoglucosidasius C56-YS93] Length = 164 Score = 34.4 bits (78), Expect = 7.2, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 9/76 (11%) Query: 118 VQRIKEVLDNRVRPAVAR----DGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 V+RI E+LD+ P + D G + + G V + + GCP+ ++ V Sbjct: 7 VERIMEMLDSVKDPEIDSVSVIDLGMVEDVQVQHGEVTVKLLPTFIGCPALDI-IQQRVE 65 Query: 174 NILNHFVPEVKDIRTV 189 L +K I V Sbjct: 66 QTLLQ----LKGIDRV 77 >gi|312110573|ref|YP_003988889.1| phenylacetate-CoA oxygenase, PaaJ subunit [Geobacillus sp. Y4.1MC1] gi|311215674|gb|ADP74278.1| phenylacetate-CoA oxygenase, PaaJ subunit [Geobacillus sp. Y4.1MC1] Length = 164 Score = 34.4 bits (78), Expect = 7.2, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 9/76 (11%) Query: 118 VQRIKEVLDNRVRPAVAR----DGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVA 173 V+RI E+LD+ P + D G + + G V + + GCP+ ++ V Sbjct: 7 VERIMEMLDSVKDPEIDSVSVIDLGMVEDVQVQHGEVTVKLLPTFIGCPALDI-IQQRVE 65 Query: 174 NILNHFVPEVKDIRTV 189 L +K I V Sbjct: 66 QTLLQ----LKGIDRV 77 >gi|257792288|ref|YP_003182894.1| chorismate synthase [Eggerthella lenta DSM 2243] gi|317490209|ref|ZP_07948697.1| chorismate synthase [Eggerthella sp. 1_3_56FAA] gi|257476185|gb|ACV56505.1| chorismate synthase [Eggerthella lenta DSM 2243] gi|316910703|gb|EFV32324.1| chorismate synthase [Eggerthella sp. 1_3_56FAA] Length = 390 Score = 34.4 bits (78), Expect = 7.2, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 21/45 (46%) Query: 16 FIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60 F LV G ++ A + S L + +FSIP I V FG F Sbjct: 218 FRVVVTGLVPGVGGYATADDRLTSRLGAALFSIPAIKGVEFGLGF 262 >gi|90423356|ref|YP_531726.1| cation diffusion facilitator family transporter [Rhodopseudomonas palustris BisB18] gi|90105370|gb|ABD87407.1| cation diffusion facilitator family transporter [Rhodopseudomonas palustris BisB18] Length = 460 Score = 34.4 bits (78), Expect = 7.7, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 41/125 (32%), Gaps = 12/125 (9%) Query: 68 YDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDN 127 + + + I++ F + + + + +L +S +A V+ I+ L Sbjct: 336 IEAHDIAHQLEHHIVDEFGTDVEVDTHIEPLEPELPHGA-----DSSAARVEEIRAALAG 390 Query: 128 RVRPAVARDGGDIVFKGYRDGIVFLSMRGAC-SGCPSASETLKYG---VANILNHFVPEV 183 V D + + G V ++ C + + + + L P V Sbjct: 391 FASDGVINDIHSVRVRDTDAGEV-VNFH--CHAAAAMSVIAVHEHVDEIERKLRRAFPSV 447 Query: 184 KDIRT 188 K + + Sbjct: 448 KRVIS 452 >gi|262215904|gb|ACY36944.1| tenectin isoform 2 [Drosophila melanogaster] gi|262215906|gb|ACY36945.1| tenectin isoform 1 [Drosophila melanogaster] Length = 2819 Score = 34.4 bits (78), Expect = 8.0, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 19/111 (17%) Query: 6 EDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 ED P P+ IP + + + I S + A+ SP +T Sbjct: 440 EDVPKPSQ---IPEKEITEDELIKVSTSAPAKASPEEE----------------VVTATT 480 Query: 66 DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116 E ++P G I E G P G G+ + D + E++ Sbjct: 481 SAPTEEDVKPTTAGTISEEEEEGKPTPAEEGSGEEEKDVKVTAAPEETEDE 531 >gi|254491729|ref|ZP_05104908.1| Hsp90 protein, putative [Methylophaga thiooxidans DMS010] gi|224463207|gb|EEF79477.1| Hsp90 protein, putative [Methylophaga thiooxydans DMS010] Length = 635 Score = 34.4 bits (78), Expect = 8.0, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 10/105 (9%) Query: 32 NAKEAEISPLASRIFSIPGIASVYFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPI 91 + A+ SP +F GI V D + +W L + +H S Sbjct: 445 SFAAAKNSP-HLEVFRKKGIE-VLLLSDRV------DEW--LTQSLTEFDGKHMQSVAKG 494 Query: 92 IHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARD 136 + G + + + + ++ +V+R+K+ LD +V+ Sbjct: 495 DLDLGELEDEEEKKAHEEIDKNFEDLVERVKKTLDEKVKDVRITH 539 >gi|116334988|ref|YP_802483.1| hypothetical protein CRP_086 [Candidatus Carsonella ruddii PV] gi|116235269|dbj|BAF35117.1| hypothetical protein [Candidatus Carsonella ruddii PV] Length = 178 Score = 34.4 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGY--RDGIVFLSMRGACSGCPSASETLKYGV 172 ++ +I ++ + + G I + + + +S G CS C + T + Sbjct: 106 ILNKIFFLIKCIINKKLILHNGAIKIDIFNFKKKTLLISFIGNCSTCSISKNTFNNFI 163 >gi|15897518|ref|NP_342123.1| hypothetical protein SSO0601 [Sulfolobus solfataricus P2] gi|284174837|ref|ZP_06388806.1| hypothetical protein Ssol98_09316 [Sulfolobus solfataricus 98/2] gi|2253628|gb|AAB63027.1| unknown [Sulfolobus solfataricus P2] gi|6015872|emb|CAB57699.1| hypothetical protein [Sulfolobus solfataricus P2] gi|13813767|gb|AAK40913.1| Conserved hypothetical protein [Sulfolobus solfataricus P2] gi|261602279|gb|ACX91882.1| protein of unknown function DUF59 [Sulfolobus solfataricus 98/2] Length = 132 Score = 34.4 bits (78), Expect = 8.5, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 6/87 (6%) Query: 105 MGSGDFIESDSAVVQRIKEVLDNRVRPAVARD----GGDIVFKGYRDGIVFLSMRGACSG 160 M S ++I E L + P + D G K DG V+L + G Sbjct: 1 MSSQQQKVDKEEWKKKIMEALKDVYDPEIPVDIVNLGLIYDLKINDDGDVYLRLGLTAPG 60 Query: 161 CPSASETLKYGVANILNHFVPEVKDIR 187 CP + L Y V ++ VP K + Sbjct: 61 CPVVDD-LIYTVEQVIKESVPA-KSVE 85 >gi|302532413|ref|ZP_07284755.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Streptomyces sp. C] gi|302441308|gb|EFL13124.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Streptomyces sp. C] Length = 153 Score = 34.0 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 28/129 (21%) Query: 76 PVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESD------------SAVVQRIKE 123 ++ ++ME + +G I D + + V RI Sbjct: 36 ELVRVLMEFYGAGLARIVERLTALAPGADPLAALLDDELTASLLTLHDLHPEDVHTRIAR 95 Query: 124 VLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGA----CSGCPS-ASETLKYGVANILNH 178 LD+ GY + L +R A C GC S A +TL+ + +++ Sbjct: 96 ALDSLPE---------AELAGYDEDDGTLRLRTATDTGC-GCGSTAEDTLRR-IEDVVAA 144 Query: 179 FVPEVKDIR 187 F PEV + Sbjct: 145 FAPEVTSVE 153 >gi|308070299|ref|YP_003871904.1| PTS system glucose-specific EIICBA component (EIICBA-Glc) [Paenibacillus polymyxa E681] gi|305859578|gb|ADM71366.1| PTS system glucose-specific EIICBA component (EIICBA-Glc) [Paenibacillus polymyxa E681] Length = 681 Score = 34.0 bits (77), Expect = 9.4, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 3/86 (3%) Query: 71 EHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVR 130 E + PV G +++ DP+ GD G + S V ++ V ++ Sbjct: 533 EDIVMPVNGELVDISTVPDPVFAERMTGDGFAVVPNDGTIV---SPVYGKVFNVFPSKHA 589 Query: 131 PAVARDGGDIVFKGYRDGIVFLSMRG 156 + DGG V V L +G Sbjct: 590 IGIQSDGGKEVLVHIGVNTVKLKGQG 615 >gi|219114098|ref|XP_002176226.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217402810|gb|EEC42787.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 476 Score = 34.0 bits (77), Expect = 9.6, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 78 LGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDG 137 + +I+E SG I G + + +F E AVV++ EV + + D Sbjct: 51 MEVIVEGVQSGTDTIVEGAHDIGERVQETTSEFQE---AVVEQYNEVKETFLDELHEADD 107 Query: 138 GDIVFKGY 145 GD+ F Sbjct: 108 GDMYFLDM 115 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.310 0.162 0.541 Lambda K H 0.267 0.0496 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,220,810,192 Number of Sequences: 14124377 Number of extensions: 191968515 Number of successful extensions: 483752 Number of sequences better than 10.0: 2088 Number of HSP's better than 10.0 without gapping: 3244 Number of HSP's successfully gapped in prelim test: 640 Number of HSP's that attempted gapping in prelim test: 475942 Number of HSP's gapped (non-prelim): 4185 length of query: 189 length of database: 4,842,793,630 effective HSP length: 131 effective length of query: 58 effective length of database: 2,992,500,243 effective search space: 173565014094 effective search space used: 173565014094 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 78 (34.4 bits)