RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780430|ref|YP_003064843.1| nitrogen fixation protein
[Candidatus Liberibacter asiaticus str. psy62]
(189 letters)
>gnl|CDD|37569 KOG2358, KOG2358, KOG2358, NifU-like domain-containing proteins
[Posttranslational modification, protein turnover,
chaperones].
Length = 213
Score = 140 bits (355), Expect = 2e-34
Identities = 76/195 (38%), Positives = 112/195 (57%), Gaps = 12/195 (6%)
Query: 1 MFIQTEDTPNPATLKFIPGQVVLVE-GAIHFSNAKEAEISPLASRIFSI-PGIASVYFGY 58
MFIQT+ TPNP++L F+PG+ +L E G F+ A SPLA I G+ V+FG
Sbjct: 10 MFIQTQITPNPSSLLFLPGKQILSERGLGDFATPCSAFFSPLAKSILFRDGGVVKVFFGP 69
Query: 59 DFITVGK--DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSA 116
DF+TV K ++ W L P + ++ + G P+I +G + +KL ESD
Sbjct: 70 DFVTVTKLTEENVWSVLDPEIPSLMSDGGNVGLPLI-DGNIVVLKLQGA-----CESDPE 123
Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRD--GIVFLSMRGACSGCPSASETLKYGVAN 174
IKE+++ R+RP + DGGD + G+ G+V L ++GAC+ CPS+ TLK G+ N
Sbjct: 124 STMTIKELIETRIRPKIQEDGGDEDYVGFETGLGLVSLKLQGACTECPSSLVTLKNGIEN 183
Query: 175 ILNHFVPEVKDIRTV 189
+L +VPEVK + V
Sbjct: 184 MLEIYVPEVKGVIQV 198
>gnl|CDD|31038 COG0694, COG0694, Thioredoxin-like proteins and domains
[Posttranslational modification, protein turnover,
chaperones].
Length = 93
Score = 90.4 bits (224), Expect = 2e-19
Identities = 37/82 (45%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Query: 110 FIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYR--DGIVFLSMRGACSGCPSASET 167
E+D+ +++R++EVLD ++RP +A DGGD+ G DG+V+L + GACSGCPS++ T
Sbjct: 3 MEETDAELLERVEEVLDEKIRPQLAMDGGDVELVGIDEEDGVVYLRLGGACSGCPSSTVT 62
Query: 168 LKYGVANILNHFVPEVKDIRTV 189
LK G+ L +PEVK++ V
Sbjct: 63 LKNGIERQLKEEIPEVKEVEQV 84
>gnl|CDD|144628 pfam01106, NifU, NifU-like domain. This is an alignment of the
carboxy-terminal domain. This is the only common region
between the NifU protein from nitrogen-fixing bacteria
and rhodobacterial species. The biochemical function of
NifU is unknown.
Length = 68
Score = 68.4 bits (168), Expect = 1e-12
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180
I+EV+D +RP + RDGGDI IV + ++GAC GC S++ TLK G+ L +
Sbjct: 1 IEEVID-EIRPMLQRDGGDIELVDVDGDIVKVRLQGACGGCMSSTMTLKGGIERKLRERL 59
Query: 181 PEVK 184
E
Sbjct: 60 GESL 63
>gnl|CDD|37645 KOG2434, KOG2434, KOG2434, RNA polymerase I transcription factor
[Transcription].
Length = 500
Score = 29.6 bits (66), Expect = 0.60
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 9/62 (14%)
Query: 73 LRPPVLGMIMEHFISGDPIIHN----GGLGDMKLDD-----MGSGDFIESDSAVVQRIKE 123
+ +L ++E I D I G+ DM+ DD SG + V I
Sbjct: 188 IGKDILEAVIERLIDLDVEIETDDSSSGMFDMETDDAEELETFSGMERNQANPVTIGITR 247
Query: 124 VL 125
+
Sbjct: 248 LS 249
>gnl|CDD|146279 pfam03557, Bunya_G1, Bunyavirus glycoprotein G1. Bunyavirus has
three genomic segments: small (S), middle-sized (M), and
large (L). The S segment encodes the nucleocapsid and a
non-structural protein. The M segment codes for two
glycoproteins, G1 and G2, and another non-structural
protein (NSm). The L segment codes for an RNA
polymerase. This family contains the G1 glycoprotein
which is the viral attachment protein.
Length = 871
Score = 28.1 bits (63), Expect = 1.6
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 138 GDIVFKGYRDGIVFLSMRGACSGCPSASE 166
GDI +K + + I L G C GC + E
Sbjct: 741 GDIRYKTFAESID-LEAEGKCVGCINCFE 768
>gnl|CDD|29121 cd02046, hsp47, Heat shock protein 47 (Hsp47), also called
colligin, because of its collagen binding ability, is a
chaperone specific for procollagen. It has been shown to
be essential for collagen biosynthesis, but its exact
function is still unclear. Hsp47 is a non-inhibitory
member of the SERPIN superfamily and corresponds to
clade H..
Length = 366
Score = 26.6 bits (58), Expect = 4.8
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 41 LASRIFSIPGIASVYFGYDFITVGKDQYDWEH 72
+ +R++ G +SV F DF+ K Y++EH
Sbjct: 90 IGNRLY---GPSSVSFADDFVKNSKKHYNYEH 118
>gnl|CDD|34806 COG5209, RCD1, Uncharacterized protein involved in cell
differentiation/sexual development [General function
prediction only].
Length = 315
Score = 26.5 bits (58), Expect = 5.0
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 55 YFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHN 94
F Y F+ +E+LR LG+I + +
Sbjct: 144 LFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIK 183
>gnl|CDD|37291 KOG2080, KOG2080, KOG2080, Uncharacterized conserved protein,
contains DENN and RUN domains [Signal transduction
mechanisms].
Length = 1295
Score = 26.2 bits (57), Expect = 5.2
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 61 ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLG-----DMKLDDMGSGDFIESDS 115
IT + W+H+ P+L + HF+ P+ + GL ++L + F++ D+
Sbjct: 356 ITSLLFPFQWQHVYVPILPASLLHFLDA-PVPYLMGLHSDDRSKLELPQEANLCFVDIDN 414
Query: 116 AVVQ 119
+Q
Sbjct: 415 HFIQ 418
>gnl|CDD|38980 KOG3776, KOG3776, KOG3776, Plasma membrane glycoprotein CD36 and
related membrane receptors [Signal transduction
mechanisms].
Length = 507
Score = 26.1 bits (57), Expect = 6.1
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 128 RVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187
+P V G+++F GY D ++ P + ++G+ N V +
Sbjct: 168 GEKPFVTVTVGELLFDGYEDPLL----SLINRFVPIKPPSPRFGLFYGYNGTSDGVYTVN 223
Query: 188 T 188
T
Sbjct: 224 T 224
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.142 0.424
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,397,929
Number of extensions: 127430
Number of successful extensions: 281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 18
Length of query: 189
Length of database: 6,263,737
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,362,145
Effective search space: 440576645
Effective search space used: 440576645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.6 bits)