RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780430|ref|YP_003064843.1| nitrogen fixation protein
[Candidatus Liberibacter asiaticus str. psy62]
(189 letters)
>1pqx_A Conserved hypothetical protein; ZR18,structure,
autostructure,spins,autoassign, northeast structural
genomics consortium; NMR {Staphylococcus aureus subsp}
(A:)
Length = 91
Score = 127 bits (320), Expect = 1e-30
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 2/90 (2%)
Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60
I +TPN T+K + + + I + G+ S++ DF
Sbjct: 2 KIISISETPNHNTMKITLSESRE-GMTSDTYTKVDDSQPAFINDILKVEGVKSIFHVMDF 60
Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISGD 89
I+V K + +WE + P V +
Sbjct: 61 ISVDKENDANWETVLPKVEAVFELEHHHHH 90
>2k1h_A Uncharacterized protein Ser13; structural genomics,
unknown function, PSI-2, protein structure initiative;
NMR {Staphylococcus epidermidis atcc 12228} (A:)
Length = 94
Score = 123 bits (310), Expect = 2e-29
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60
I +TPN T+K + + + A + +R+F I G+ S+++ DF
Sbjct: 2 EIIAISETPNHNTMKVSLSEPRQ-DNSFTTYTAAQEGQPEFINRLFEIEGVKSIFYVLDF 60
Query: 61 ITVGK-DQYDWEHLRPPVLGMIMEHFISG 88
I++ K D +W L P + + +
Sbjct: 61 ISIDKEDNANWNELLPQIENTFAKSNLEH 89
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} (A:)
Length = 92
Score = 101 bits (253), Expect = 6e-23
Identities = 38/78 (48%), Positives = 56/78 (71%)
Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171
E D VV IKE+LD R+RP V DGGD++++G+ DGIV L ++G+C+ CPS+ TLK G
Sbjct: 9 EEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSG 68
Query: 172 VANILNHFVPEVKDIRTV 189
+ N+L ++PEV+ + V
Sbjct: 69 IQNMLQFYIPEVEGVEQV 86
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like,
structural genomics, protein structure initiative, NESG,
PSI; NMR {Staphylococcus epidermidis atcc 12228} (A:)
Length = 88
Score = 97.9 bits (244), Expect = 8e-22
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171
+ + ++ EV++ R+RP + RDGGD DGIV L + GAC CPS++ TLK G
Sbjct: 3 TENPTMFDQVAEVIE-RLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAG 61
Query: 172 VANILNHFVPEVKDIRTV 189
+ L+ VP V ++ V
Sbjct: 62 IERALHEEVPGVIEVEQV 79
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster
biosynthesis, metal transport; 1.35A {Arabidopsis
thaliana} PDB: 2jnv_A (A:1-81)
Length = 81
Score = 97.1 bits (242), Expect = 1e-21
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176
+ ++ VLD +RP + DGG++ +V + ++GAC CPS++ T+K G+ L
Sbjct: 5 TEENVESVLD-EIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRL 63
Query: 177 NHFVPEVKDIRTV 189
+PE+ + +
Sbjct: 64 MEKIPEIVAVEAL 76
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics,
program for RICE genome research, unknown function; NMR
{Oryza sativa} (A:)
Length = 74
Score = 85.9 bits (213), Expect = 3e-18
Identities = 12/73 (16%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 117 VVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANIL 176
+ +++VL+ GG + F + IV + + G + T++ V+ L
Sbjct: 5 NEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVR----TVRIAVSKKL 60
Query: 177 NHFVPEVKDIRTV 189
+P ++ ++ +
Sbjct: 61 REKIPSIQIVQLL 73
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster
biosynthesis, metal transport; 1.35A {Arabidopsis
thaliana} PDB: 2jnv_A (A:82-154)
Length = 73
Score = 84.3 bits (209), Expect = 1e-17
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 114 DSAVVQRIKEVLDNRVRPAVARDG-GDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGV 172
+ I++VL+ +RP + G + D IV + + G +G T++ V
Sbjct: 2 LELNEENIEKVLE-EIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGVM----TVRVAV 56
Query: 173 ANILNHFVPEVKDIRTV 189
L +P + ++ +
Sbjct: 57 TQKLREKIPSIAAVQLI 73
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* (A:86-344,A:396-476)
Length = 340
Score = 32.5 bits (72), Expect = 0.038
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179
+ E+ R V +G FK F + + C+G A L + IL HF
Sbjct: 248 VHEIQ--RFITLVPENGK---FKYSDYFKPFSTGKRVCAGEGLARMELFLLLCAILQHF 301
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug
metabolizing enzyme, alpha-naphthoflavone,
benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET:
HEM BHF; 1.95A {Homo sapiens} (A:91-359,A:416-495)
Length = 349
Score = 28.2 bits (61), Expect = 0.65
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 9/60 (15%)
Query: 121 IKEVLDNRVRPAVARDGG-DIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179
I E R + + ++F + C G A + +A +L
Sbjct: 258 ILETF--RHSSFLPINKPLSEKM------MLFGMGKRRCIGEVLAKWEIFLFLAILLQQL 309
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP
2B4, CYP LM2, monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} (A:91-345,A:397-476)
Length = 335
Score = 28.3 bits (61), Expect = 0.68
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180
I E+ R+ + +G K + F + C G A L IL +F
Sbjct: 244 IHEIQ--RLGDLIPANGA---LKRNEGFMPFSLGKRICLGEGIARTELFLFFTTILQNFS 298
Query: 181 PEV 183
Sbjct: 299 IAS 301
>2f9q_A CYPIID6, cytochrome P450 2D6, P450-DB1; HAEM,
oxidoreductase; HET: HEM; 3.00A {Homo sapiens}
(A:87-349,A:404-479)
Length = 339
Score = 27.8 bits (60), Expect = 0.83
Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 8/59 (13%)
Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179
I EV R V K + F + R AC G P A L ++L HF
Sbjct: 252 IHEVQ--RFGDIVPH-----FVKPEA-FLPFSAGRRACLGEPLARMELFLFFTSLLQHF 302
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase,
drug metabolism, structural genomics, structural
genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo
sapiens} (A:81-350,A:405-481)
Length = 347
Score = 27.9 bits (60), Expect = 0.96
Identities = 12/59 (20%), Positives = 16/59 (27%), Gaps = 8/59 (13%)
Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179
+ EVL R V + F R C G A + +L F
Sbjct: 259 LHEVL--RFCNIVPYFAKKEAL------VPFSLGRRHCLGEHLARMEMFLFFTALLQRF 309
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing
enzyme, oxidoreductase, heme; HET: HEM FLP; 2.00A {Homo
sapiens} (A:86-346,A:398-477)
Length = 341
Score = 27.8 bits (60), Expect = 1.0
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179
+ EV R + G FK + + F + + C G A L + +IL +F
Sbjct: 250 VHEVQ--RYIDLLPEGG---NFKKSKYFMPFSAGKRICVGEALAGMELFLFLTSILQNF 303
>1tqn_A Cytochrome P450 3A4; CYP3A4, monooxygenase, drug
metabolizing enzyme, oxidoreductase, heme; HET: HEM;
2.05A {Homo sapiens} (A:89-347,A:404-486)
Length = 342
Score = 27.1 bits (58), Expect = 1.5
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 11/59 (18%)
Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179
+ E L R+ P Y F S C G A +K + +L +F
Sbjct: 251 VNETL--RLFPDN--------IDPYI-YTPFGSGPRNCIGMRFALMNMKLALIRVLQNF 298
>3flo_A DNA polymerase alpha subunit B; protein-protein complex,
phosphoesterase fold, OB fold, zinc-binding motif, DNA
replication; HET: DNA; 2.50A {Saccharomyces cerevisiae}
(A:1-127,A:295-307)
Length = 140
Score = 26.3 bits (58), Expect = 2.7
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
Query: 16 FIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIP 49
F GQ+V +G NA + I +P
Sbjct: 97 FFLGQIVAFKG----KNANGDYF--TVNSILPLP 124
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger}
(A:1-120,A:179-348)
Length = 290
Score = 26.0 bits (56), Expect = 3.5
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 40 PLASRIFSIPGIASVYFGYDF-ITVGKDQYDWE 71
+ S IF GI VY G + GK Y+ E
Sbjct: 255 NVLSYIFLSDGIPIVYAGEEQHYAGGKVPYNRE 287
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold,
Cys-SA inhibitor, zinc binding, ATP-binding,
aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A
{Mycobacterium smegmatis} (A:1-133,A:230-414)
Length = 318
Score = 25.5 bits (55), Expect = 4.5
Identities = 9/67 (13%), Positives = 14/67 (20%), Gaps = 2/67 (2%)
Query: 55 YFGYDFITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGS--GDFIE 112
G D G D H + + G+ M G+ +
Sbjct: 146 GTGLDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVL 205
Query: 113 SDSAVVQ 119
Q
Sbjct: 206 VSQLRAQ 212
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.142 0.424
Gapped
Lambda K H
0.267 0.0573 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,534,412
Number of extensions: 70514
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 25
Length of query: 189
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 105
Effective length of database: 2,116,429
Effective search space: 222225045
Effective search space used: 222225045
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)