BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780430|ref|YP_003064843.1| nitrogen fixation protein
[Candidatus Liberibacter asiaticus str. psy62]
         (189 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780430|ref|YP_003064843.1| nitrogen fixation protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 189

 Score =  387 bits (994), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/189 (100%), Positives = 189/189 (100%)

Query: 1   MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60
           MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF
Sbjct: 1   MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60

Query: 61  ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120
           ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR
Sbjct: 61  ITVGKDQYDWEHLRPPVLGMIMEHFISGDPIIHNGGLGDMKLDDMGSGDFIESDSAVVQR 120

Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180
           IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV
Sbjct: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFV 180

Query: 181 PEVKDIRTV 189
           PEVKDIRTV
Sbjct: 181 PEVKDIRTV 189


>gi|254781224|ref|YP_003065637.1| hypothetical protein CLIBASIA_05655 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 103

 Score = 28.1 bits (61), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188
           VR  V +D  +I F      + +L+ +   +   +    LK  +AN+      ++ D+RT
Sbjct: 6   VRQKVQKDSVEIRFTKLETALPYLATKADLADVRTE---LKQDIANVRTELKADIADVRT 62


>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1162

 Score = 25.0 bits (53), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 90   PIIHN-GGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNR 128
            PII N   LG   +   G+  F+ES     Q+I +VL+ R
Sbjct: 1048 PIIQNFKKLGFKIMATEGTARFLESHGLETQKINKVLEGR 1087


>gi|254780320|ref|YP_003064733.1| translation initiation factor IF-3 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 136

 Score = 22.7 bits (47), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 100 MKLDDMGSGDFIESDSAVVQRIKEVLDNR-VRPAVARDGGDIVFKGYRDGIVFLSMR 155
           M++    + D +E DS+V   + ++LD R +R  + ++  +   K    GI  + MR
Sbjct: 1   MQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVKMR 57


>gi|254780344|ref|YP_003064757.1| 7-cyano-7-deazaguanine reductase [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 154

 Score = 22.7 bits (47), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 7  DTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASR 44
          D PN A L+ IP Q   +   + F+  +   + P+ S+
Sbjct: 20 DDPNEALLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQ 57


>gi|254780600|ref|YP_003065013.1| CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 200

 Score = 22.3 bits (46), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 45  IFSIPGIASVYFGYDFITVGKDQYDWE 71
           +  I  + ++Y GYD+  VG    D E
Sbjct: 170 LLWISALLTIYSGYDYFRVGIKHIDSE 196


>gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 673

 Score = 21.6 bits (44), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 156 GACSGCPSASETLKYGVANILNHFVPEVK 184
           G+C+G  + +  L  G+AN +   + E K
Sbjct: 120 GSCAGIEATTGPLGQGIANAVGMAIAERK 148


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.142    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,640
Number of Sequences: 1233
Number of extensions: 5176
Number of successful extensions: 15
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 9
length of query: 189
length of database: 328,796
effective HSP length: 69
effective length of query: 120
effective length of database: 243,719
effective search space: 29246280
effective search space used: 29246280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 36 (18.5 bits)