HHsearch alignment for GI: 254780431 and conserved domain: COG5352
>COG5352 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=100.00 E-value=0 Score=387.88 Aligned_cols=169 Identities=43% Similarity=0.772 Sum_probs=131.0
Q ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97778999999999981865889999967854346666777514554455544444432233322234454322222223
Q gi|254780431|r 1 MVWTVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRLFLSNRVKVNENKQSDGNRKNVTLGSTSPKTRQSSNVY 80 (178)
Q Consensus 1 MsWTderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRLgLs~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (178)
T Consensus 1 MnWtdERve~LkKLWseGLSASQIAaQLGGVsRnAVIGKVHRL~lsgR~~~~a~~aR~k---~~~sapr--~~~~~a~s~ 75 (169)
T COG5352 1 MNWTDERVETLKKLWSEGLSASQIAAQLGGVSRNAVIGKVHRLGLSGRAKPTAAPARQK---KTTSAPR--APVRAAQSV 75 (169)
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHEEEEECCCCCCCCCCCCCCCCC---CCCCCCC--CCHHHHHCC
T ss_conf 97418999999999983047999999965840422100123414566577676655532---1235778--730555125
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHH
Q ss_conf 33443211100000124544556223444334453111563333684320055789986450047878768887716888
Q gi|254780431|r 81 ICEPVLKGQLPVVRSKRKSKSMEKNNTISSGIVLPISRCLRLMELTDNTCKWPLGDPFGKDFSFCGSDVCNDSPYCDYHK 160 (178)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sLl~Lte~tCkWPiGDP~~~dF~FCG~~~~~g~PYC~~H~ 160 (178)
T Consensus 76 ~~~~tr~gatal~~~~a~~~va~~~~~p~~~~v~P~Sr~l~ll~L~ertCkWPiGdPl~edF~FCGn~s~eagpYC~~Ha 155 (169)
T COG5352 76 RHTPTRTGATALQAEVATPVVAPRYIRPAENVVLPISRHLTLLELGERTCKWPIGDPLNEDFHFCGNESAEAGPYCEYHA 155 (169)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 66654346532224225654443335523311034432000100010113687899644555433788655584156766
Q ss_pred HHHCCCCCCHHHHH
Q ss_conf 88705775102344
Q gi|254780431|r 161 KLAYQRVNDRRKVQ 174 (178)
Q Consensus 161 ~iAYQP~~~rr~~~ 174 (178)
T Consensus 156 r~Afqp~aerrr~R 169 (169)
T COG5352 156 RVAFQPAAERRRAR 169 (169)
T ss_pred HHHCCHHHHHHHCC
T ss_conf 65234577776229