HHsearch alignment for GI: 254780431 and conserved domain: PRK06930

>PRK06930 positive control sigma-like factor; Validated.
Probab=90.11  E-value=0.3  Score=29.91  Aligned_cols=28  Identities=32%  Similarity=0.411  Sum_probs=25.5

Q ss_pred             HHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             98186588999996785434666677751
Q gi|254780431|r   15 WSEGLSASQIAVQLGGVTRNAVIGKLHRL   43 (178)
Q Consensus        15 W~eG~SasqIA~~lGgvtRNAVIGK~hRL   43 (178)
T Consensus       127 ~~~glsy~EIA~~L~-Is~~tV~~~l~RA  154 (170)
T PRK06930        127 RGYGLSYSEIAAYLN-IKKSTVQSMIERA  154 (170)
T ss_pred             HHHCCCHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf             761888999999979-8899999999999