HHsearch alignment for GI: 254780431 and conserved domain: PRK06930
>PRK06930 positive control sigma-like factor; Validated.
Probab=90.11 E-value=0.3 Score=29.91 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=25.5
Q ss_pred HHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 98186588999996785434666677751
Q gi|254780431|r 15 WSEGLSASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 15 W~eG~SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
T Consensus 127 ~~~glsy~EIA~~L~-Is~~tV~~~l~RA 154 (170)
T PRK06930 127 RGYGLSYSEIAAYLN-IKKSTVQSMIERA 154 (170)
T ss_pred HHHCCCHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf 761888999999979-8899999999999