HHsearch alignment for GI: 254780431 and conserved domain: pfam02796

>pfam02796 HTH_7 Helix-turn-helix domain of resolvase.

Probab=93.84  E-value=0.091  Score=33.25  Aligned_cols=34  Identities=32%  Similarity=0.511  Sum_probs=30.0

Q ss_pred             CCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH
Q ss_conf             77899999999998186588999996785434666
Q gi|254780431|r    3 WTVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVI   37 (178)
Q Consensus         3 WTderve~LkkLW~eG~SasqIA~~lGgvtRNAVI   37 (178)
T Consensus         6 l~~~~~~~v~~L~~~G~~i~~IA~~~~-vsrsTvY   39 (45)
T pfam02796         6 LNEEDINEVITLLEEGISIKQIAKIFG-ISRSTVY   39 (45)
T ss_pred             CCHHHHHHHHHHHHCCCCHHHHHHHHC-CHHHHHH
T ss_conf             389999999999987994999999986-0088887