HHsearch alignment of GI: 254780431 and MMDB domain: 1rp3_A_90-239

>1rp3_A (A:90-239) RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus}

Probab=90.46  E-value=0.49  Score=28.03  Aligned_cols=39  Identities=15%  Similarity=0.083  Sum_probs=31.0

Q ss_pred             CHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             7899999999998186588999996785434666677751
Q gi|254780431|r    4 TVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL   43 (178)
Q Consensus         4 Tderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL   43 (178)
                      +++--+.+.-.--+|+|..+||+.|| +|.|+|=-..||-
T Consensus       100 ~~~~r~vi~l~~~~g~s~~EIA~~lg-is~~tV~~~l~ra  138 (150)
T 1rp3_A          100 PEREKLVIQLIFYEELPAKEVAKILE-TSVSRVSQLKAKA  138 (150)
T ss_dssp             CHHHHHHHHHHHTSCCCHHHHHHHTT-SCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf             99999999999269999999999989-5999999999999