HHsearch alignment of GI: 254780431 and MMDB domain: 1u78_A_1-53

>1u78_A (A:1-53) TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans}

Probab=90.56  E-value=0.42  Score=28.49  Aligned_cols=34  Identities=9%  Similarity=0.106  Sum_probs=30.3

Q ss_pred             CCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH
Q ss_conf             77899999999998186588999996785434666
Q gi|254780431|r    3 WTVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVI   37 (178)
Q Consensus         3 WTderve~LkkLW~eG~SasqIA~~lGgvtRNAVI   37 (178)
                      -||+--.++.-+-..|+|-.+||++|| -|||.|=
T Consensus         7 Lt~~E~~~I~~~~~~g~s~~eIArki~-RS~~vi~   40 (53)
T 1u78_A            7 LSDTERAQLDVMKLLNVSLHEMSRKIS-RSRHCIR   40 (53)
T ss_dssp             CCHHHHHHHHHHHHTTCCHHHHHHHHT-CCHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCHHHHHHHHC-CCHHHHH
T ss_conf             999999999999997999999999989-5899999