Query gi|254780431|ref|YP_003064844.1| hypothetical protein CLIBASIA_01580 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 178
No_of_seqs 118 out of 521
Neff 6.3
Searched_HMMs 33803
Date Wed Jun 1 12:49:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780431.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1gdt_A GD resolvase, protein 96.6 0.0022 6.5E-08 43.4 3.7 29 8-37 7-35 (42)
2 >1jko_C HIN recombinase, DNA-i 96.0 0.0051 1.5E-07 41.0 3.0 37 3-40 6-42 (52)
3 >2r0q_C Putative transposon TN 95.0 0.032 9.4E-07 35.8 4.2 37 10-47 17-53 (59)
4 >1pdn_C Protein (PRD paired); 92.8 0.24 7.1E-06 30.1 5.2 42 6-48 5-46 (53)
5 >2k27_A Paired box protein PAX 91.6 0.37 1.1E-05 28.8 5.0 45 3-48 26-70 (75)
6 >2cfx_A HTH-type transcription 91.0 0.62 1.8E-05 27.4 5.7 43 1-44 1-44 (55)
7 >2oqg_A Possible transcription 91.0 0.46 1.3E-05 28.2 5.0 43 4-47 20-65 (79)
8 >1u78_A TC3 transposase, trans 90.6 0.42 1.2E-05 28.5 4.5 34 3-37 7-40 (53)
9 >1rp3_A RNA polymerase sigma f 90.5 0.49 1.5E-05 28.0 4.8 39 4-43 100-138 (150)
10 >1s7o_A Hypothetical UPF0122 p 89.9 0.73 2.2E-05 26.9 5.2 38 4-42 24-61 (73)
11 >2jn6_A Protein CGL2762, trans 89.3 0.58 1.7E-05 27.6 4.3 41 1-42 1-46 (56)
12 >3c3w_A Two component transcri 89.2 0.55 1.6E-05 27.7 4.2 31 10-41 8-38 (47)
13 >2w48_A Sorbitol operon regula 89.1 0.4 1.2E-05 28.6 3.5 37 8-45 11-50 (54)
14 >1fx7_A Iron-dependent repress 88.6 0.73 2.2E-05 26.9 4.5 47 3-50 4-58 (141)
15 >2a61_A Transcriptional regula 88.2 1.2 3.4E-05 25.6 5.3 45 4-49 4-52 (66)
16 >1a04_A Nitrate/nitrite respon 88.1 1 3.1E-05 25.9 5.0 36 7-43 30-65 (87)
17 >1u2w_A CADC repressor, cadmiu 88.0 0.71 2.1E-05 27.0 4.1 44 5-49 15-62 (95)
18 >1l3l_A Transcriptional activa 87.7 0.98 2.9E-05 26.1 4.7 33 10-43 7-39 (61)
19 >2p8t_A Hypothetical protein P 87.7 0.67 2E-05 27.1 3.8 43 5-48 17-62 (200)
20 >2h09_A Transcriptional regula 87.6 0.6 1.8E-05 27.5 3.5 47 2-49 33-87 (155)
21 >1or7_A Sigma-24, RNA polymera 87.6 1.1 3.1E-05 25.9 4.8 36 7-43 29-64 (78)
22 >3ech_A MEXR, multidrug resist 87.5 1.3 3.8E-05 25.3 5.2 47 2-49 34-84 (122)
23 >3e7l_A Transcriptional regula 87.5 1.6 4.7E-05 24.7 5.6 43 5-48 19-61 (63)
24 >2gxg_A 146AA long hypothetica 87.3 0.89 2.6E-05 26.4 4.3 46 3-49 35-83 (121)
25 >2jpc_A SSRB; DNA binding prot 87.2 0.9 2.7E-05 26.3 4.2 38 10-48 5-46 (61)
26 >3cjn_A Transcriptional regula 86.8 1.3 3.8E-05 25.3 4.9 45 4-49 4-52 (78)
27 >1x3u_A Transcriptional regula 86.7 1.1 3.3E-05 25.7 4.5 37 11-48 24-64 (79)
28 >2qq9_A Diphtheria toxin repre 86.7 1 3E-05 26.0 4.3 49 1-50 2-58 (146)
29 >1fse_A GERE; helix-turn-helix 86.7 1.2 3.6E-05 25.4 4.7 33 10-43 18-50 (74)
30 >2elh_A CG11849-PA, LD40883P; 86.3 1.2 3.7E-05 25.4 4.6 41 3-44 23-63 (87)
31 >1vz0_A PARB, chromosome parti 86.3 1.6 4.7E-05 24.7 5.1 34 6-40 23-56 (59)
32 >1r1t_A Transcriptional repres 86.1 0.84 2.5E-05 26.5 3.6 44 5-49 2-48 (78)
33 >3f3x_A Transcriptional regula 86.0 1.5 4.4E-05 24.9 4.9 45 4-49 36-83 (122)
34 >2cob_A LCOR protein; MLR2, KI 85.7 1.9 5.8E-05 24.1 5.3 45 1-46 12-57 (70)
35 >3i4p_A Transcriptional regula 85.7 1.3 3.7E-05 25.3 4.3 39 7-46 5-44 (53)
36 >3g3z_A NMB1585, transcription 85.4 2 6E-05 24.0 5.3 45 4-49 1-49 (91)
37 >2a6h_F RNA polymerase sigma f 85.4 0.61 1.8E-05 27.4 2.6 27 16-43 43-69 (88)
38 >3b73_A PHIH1 repressor-like p 85.2 0.96 2.9E-05 26.1 3.5 49 2-50 9-63 (111)
39 >1je8_A Nitrate/nitrite respon 85.2 1.1 3.3E-05 25.7 3.9 40 8-48 26-69 (82)
40 >3c57_A Two component transcri 84.9 1.1 3.3E-05 25.7 3.8 45 4-50 29-77 (95)
41 >2dbb_A Putative HTH-type tran 84.7 2.3 6.9E-05 23.6 5.3 42 2-44 6-48 (58)
42 >3clo_A Transcriptional regula 84.6 1.4 4.2E-05 25.0 4.2 39 9-48 5-47 (60)
43 >1xsv_A Hypothetical UPF0122 p 84.4 1.9 5.5E-05 24.2 4.8 38 4-42 27-64 (76)
44 >2cyy_A Putative HTH-type tran 84.1 3 8.8E-05 22.9 5.7 43 1-44 3-46 (57)
45 >1jgs_A Multiple antibiotic re 84.1 2.5 7.4E-05 23.4 5.3 45 4-49 33-81 (122)
46 >2nyx_A Probable transcription 84.0 2.2 6.4E-05 23.8 4.9 44 5-49 3-50 (64)
47 >1r71_A Transcriptional repres 83.4 2.2 6.5E-05 23.8 4.7 34 6-40 40-73 (76)
48 >2fbi_A Probable transcription 83.3 2.2 6.5E-05 23.7 4.7 45 4-49 1-49 (75)
49 >1ku3_A Sigma factor SIGA; hel 83.2 1.6 4.8E-05 24.6 4.0 34 8-42 18-53 (73)
50 >2hoe_A N-acetylglucosamine ki 82.8 1.8 5.3E-05 24.3 4.1 41 7-48 22-65 (85)
51 >1yio_A Response regulatory pr 82.4 2.5 7.3E-05 23.5 4.7 38 10-48 6-47 (65)
52 >2k4b_A Transcriptional regula 82.4 1.3 4E-05 25.2 3.3 44 8-51 38-88 (99)
53 >1hlv_A CENP-B, major centrome 82.4 2.1 6.4E-05 23.8 4.4 36 5-41 11-47 (67)
54 >2e1c_A Putative HTH-type tran 82.0 3.8 0.00011 22.2 5.5 41 3-44 25-66 (77)
55 >3cuo_A Uncharacterized HTH-ty 82.0 1.4 4.1E-05 25.1 3.3 44 5-49 15-62 (90)
56 >2nnn_A Probable transcription 81.9 3.2 9.5E-05 22.7 5.1 45 4-49 3-51 (65)
57 >1eto_A FIS, factor for invers 81.8 3.5 0.0001 22.5 5.3 41 5-46 13-53 (53)
58 >2eth_A Transcriptional regula 81.4 3.1 9.2E-05 22.8 4.9 45 4-49 43-91 (130)
59 >2o8x_A Probable RNA polymeras 81.3 3.2 9.4E-05 22.7 4.9 37 6-43 19-55 (70)
60 >3fm5_A Transcriptional regula 81.0 3.1 9.3E-05 22.7 4.8 45 4-49 38-87 (124)
61 >3bpv_A Transcriptional regula 80.9 3.9 0.00012 22.1 5.3 45 4-49 28-76 (114)
62 >2p4w_A Transcriptional regula 80.9 3.3 9.8E-05 22.6 4.9 44 4-48 14-60 (77)
63 >2cu7_A KIAA1915 protein; nucl 80.7 4.8 0.00014 21.5 5.7 42 2-43 11-53 (72)
64 >3deu_A Transcriptional regula 80.3 2.8 8.3E-05 23.1 4.4 46 4-50 52-102 (139)
65 >1tty_A Sigma-A, RNA polymeras 80.3 3.4 9.9E-05 22.6 4.8 27 16-43 36-62 (87)
66 >2fxa_A Protease production re 80.1 3.4 0.0001 22.5 4.7 45 4-49 3-51 (81)
67 >2p5v_A Transcriptional regula 80.0 4.1 0.00012 22.0 5.1 41 3-44 8-49 (60)
68 >3klo_A Transcriptional regula 80.0 3.1 9.2E-05 22.8 4.5 33 10-43 12-44 (71)
69 >2pex_A Transcriptional regula 79.8 3.2 9.6E-05 22.7 4.5 46 3-49 2-51 (71)
70 >1ku9_A Hypothetical protein M 79.7 4 0.00012 22.0 5.0 47 3-50 24-75 (88)
71 >1zx4_A P1 PARB, plasmid parti 79.7 4.5 0.00013 21.7 5.3 42 6-48 12-53 (81)
72 >1ntc_A Protein (nitrogen regu 79.5 2.3 6.9E-05 23.6 3.8 39 7-46 53-91 (91)
73 >2q0o_A Probable transcription 79.3 4.2 0.00013 21.9 5.0 38 4-43 5-42 (64)
74 >1z05_A Transcriptional regula 79.2 3.7 0.00011 22.3 4.7 42 7-49 41-86 (132)
75 >2rnj_A Response regulator pro 79.1 1.9 5.6E-05 24.2 3.2 38 10-48 36-77 (91)
76 >2w25_A Probable transcription 78.9 5.3 0.00016 21.3 5.4 38 6-44 8-46 (56)
77 >1uly_A Hypothetical protein P 78.6 2.5 7.3E-05 23.4 3.6 42 4-46 10-54 (74)
78 >2ict_A Antitoxin HIGA; helix- 78.6 2.4 7E-05 23.6 3.5 32 9-41 11-43 (46)
79 >1i1g_A Transcriptional regula 78.3 1.9 5.6E-05 24.2 3.0 37 7-44 6-43 (54)
80 >1ub9_A Hypothetical protein P 78.1 4 0.00012 22.1 4.6 44 5-49 16-63 (100)
81 >2jvl_A TRMBF1; coactivator, h 77.9 1.3 3.7E-05 25.3 2.0 30 6-36 37-66 (107)
82 >2frh_A SARA, staphylococcal a 77.8 4.3 0.00013 21.9 4.7 47 2-49 34-86 (127)
83 >2rdp_A Putative transcription 77.6 5.7 0.00017 21.0 5.3 45 4-49 41-89 (127)
84 >1z91_A Organic hydroperoxide 77.5 3 8.9E-05 22.9 3.8 45 4-49 6-54 (78)
85 >3iyd_F RNA polymerase sigma f 77.1 0.8 2.4E-05 26.6 0.8 36 7-43 53-91 (110)
86 >1on2_A Transcriptional regula 76.8 4.3 0.00013 21.9 4.4 40 9-49 11-55 (142)
87 >2ia0_A Putative HTH-type tran 76.8 6.3 0.00019 20.8 5.3 37 7-44 19-56 (66)
88 >3f6o_A Probable transcription 76.6 2 6.1E-05 24.0 2.8 44 5-49 18-64 (118)
89 >2bv6_A MGRA, HTH-type transcr 76.5 3 9E-05 22.8 3.6 45 4-49 4-52 (76)
90 >2hr3_A Probable transcription 76.0 5.1 0.00015 21.4 4.6 45 4-49 5-54 (94)
91 >3eco_A MEPR; mutlidrug efflux 75.8 5.7 0.00017 21.1 4.9 45 4-49 30-80 (119)
92 >3e6m_A MARR family transcript 75.7 4.5 0.00013 21.7 4.3 45 4-49 52-100 (138)
93 >3hef_A Gene 1 protein; bacter 75.4 3.1 9.3E-05 22.7 3.5 35 3-38 16-51 (143)
94 >2yus_A SWI/SNF-related matrix 75.4 7 0.00021 20.5 5.3 43 2-44 20-63 (79)
95 >2kko_A Possible transcription 75.2 1.9 5.6E-05 24.2 2.3 43 5-48 25-70 (82)
96 >3f6v_A Possible transcription 74.8 1.6 4.7E-05 24.7 1.8 44 4-48 57-103 (131)
97 >2g9w_A Conserved hypothetical 74.3 6.1 0.00018 20.9 4.7 47 3-49 7-61 (74)
98 >1u78_A TC3 transposase, trans 74.2 7.5 0.00022 20.3 5.3 47 4-50 9-57 (88)
99 >1umq_A Photosynthetic apparat 73.7 7.4 0.00022 20.3 5.0 40 5-45 41-80 (81)
100 >3hrs_A Metalloregulator SCAR; 73.7 2.7 7.9E-05 23.2 2.8 41 8-49 5-53 (138)
101 >2zkz_A Transcriptional repres 73.5 5 0.00015 21.4 4.1 38 5-46 27-65 (99)
102 >2o0m_A Transcriptional regula 73.5 0.79 2.3E-05 26.7 0.0 35 11-46 27-64 (345)
103 >2q1z_A RPOE, ECF SIGE; ECF si 73.1 1.1 3.4E-05 25.6 0.7 36 7-43 38-73 (82)
104 >3bdd_A Regulatory protein MAR 72.8 8.1 0.00024 20.0 5.3 45 4-49 1-49 (73)
105 >1r1u_A CZRA, repressor protei 72.7 6.4 0.00019 20.7 4.5 43 5-48 26-71 (106)
106 >1p4w_A RCSB; solution structu 72.6 5.6 0.00017 21.1 4.2 43 4-48 36-82 (99)
107 >1okr_A MECI, methicillin resi 72.6 6.2 0.00018 20.8 4.4 48 3-50 8-62 (73)
108 >3f6w_A XRE-family like protei 72.5 4.3 0.00013 21.9 3.5 29 9-38 17-46 (83)
109 >2fjr_A Repressor protein CI; 72.3 4.4 0.00013 21.8 3.6 31 5-38 8-39 (70)
110 >2fbh_A Transcriptional regula 72.2 6.5 0.00019 20.7 4.4 44 5-49 3-51 (67)
111 >2jsc_A Transcriptional regula 71.9 2.9 8.6E-05 23.0 2.6 43 5-48 21-66 (118)
112 >3boq_A Transcriptional regula 71.8 5.3 0.00016 21.3 3.9 46 4-50 46-96 (133)
113 >1g2h_A Transcriptional regula 71.6 6.6 0.0002 20.6 4.3 35 11-46 26-60 (61)
114 >2pn6_A ST1022, 150AA long hyp 71.3 7.1 0.00021 20.4 4.5 37 7-44 5-42 (53)
115 >3iwf_A Transcription regulato 71.1 3.8 0.00011 22.2 3.0 30 17-47 34-63 (74)
116 >2k9n_A MYB24; R2R3 domain, DN 70.9 8.9 0.00026 19.8 5.5 42 2-43 4-46 (56)
117 >1j5y_A Transcriptional regula 70.4 3.5 0.0001 22.4 2.7 37 6-43 21-60 (79)
118 >2qww_A Transcriptional regula 70.2 7.6 0.00023 20.2 4.4 46 4-50 40-89 (131)
119 >2fa5_A Transcriptional regula 69.6 9.5 0.00028 19.6 5.3 45 4-49 48-96 (134)
120 >1tlh_B Sigma-70, RNA polymera 69.5 2.8 8.2E-05 23.1 2.0 26 16-42 36-61 (81)
121 >3cec_A Putative antidote prot 69.3 5.5 0.00016 21.1 3.5 32 9-41 21-53 (56)
122 >2ppx_A AGR_C_3184P, uncharact 69.0 3.3 9.8E-05 22.6 2.4 32 3-37 30-61 (68)
123 >1s3j_A YUSO protein; structur 68.6 9 0.00027 19.8 4.5 46 4-50 36-85 (122)
124 >3bja_A Transcriptional regula 68.2 8.1 0.00024 20.0 4.2 45 4-49 32-80 (118)
125 >3hot_A Transposable element m 68.0 4.8 0.00014 21.5 3.0 39 8-47 9-49 (52)
126 >3gn5_A HTH-type transcription 67.8 6.6 0.0002 20.6 3.7 34 4-40 1-34 (62)
127 >1lmb_3 Protein (lambda repres 67.5 6.3 0.00019 20.7 3.5 31 8-39 19-50 (92)
128 >1lj9_A Transcriptional regula 67.0 6.6 0.0002 20.6 3.6 43 6-49 3-49 (87)
129 >1bia_A BIRA bifunctional prot 67.0 11 0.00032 19.3 4.7 43 1-44 1-44 (64)
130 >3k0l_A Repressor protein; hel 66.3 11 0.00033 19.2 4.9 46 4-50 45-94 (131)
131 >2fbk_A Transcriptional regula 66.3 8.8 0.00026 19.8 4.1 46 4-50 68-120 (157)
132 >1b0n_A Protein (SINR protein) 66.2 7.4 0.00022 20.3 3.7 30 6-38 4-33 (65)
133 >1x64_A Alpha-actinin-2 associ 65.7 2.4 7E-05 23.5 1.1 20 150-169 19-38 (39)
134 >3cta_A Riboflavin kinase; str 65.3 3.1 9.1E-05 22.8 1.6 43 6-49 14-60 (91)
135 >2qlz_A Transcription factor P 65.3 1 3.1E-05 25.9 -0.8 44 4-48 11-57 (76)
136 >2d1h_A ST1889, 109AA long hyp 64.9 10 0.00031 19.3 4.2 41 8-49 25-69 (109)
137 >2heo_A Z-DNA binding protein 64.9 12 0.00035 19.0 4.7 43 4-47 9-53 (67)
138 >3cdh_A Transcriptional regula 64.9 8.9 0.00026 19.8 3.9 45 4-49 12-60 (103)
139 >2vxz_A Pyrsv_GP04; viral prot 64.9 5.5 0.00016 21.2 2.8 48 5-53 11-61 (165)
140 >2cg4_A Regulatory protein ASN 64.6 2.2 6.6E-05 23.7 0.7 36 8-44 8-44 (55)
141 >1x3h_A Leupaxin; paxillin fam 64.6 2.2 6.4E-05 23.8 0.7 12 150-161 12-23 (33)
142 >3jw4_A Transcriptional regula 64.2 8.3 0.00024 20.0 3.6 46 4-50 14-65 (101)
143 >2ef8_A C.ECOT38IS, putative t 63.9 8.7 0.00026 19.8 3.7 29 10-39 14-43 (84)
144 >3bj6_A Transcriptional regula 63.8 12 0.00036 18.9 4.4 46 4-50 39-88 (125)
145 >2w7n_A TRFB transcriptional r 62.4 13 0.00039 18.7 5.3 40 3-43 19-58 (73)
146 >2p7v_B Sigma-70, RNA polymera 62.2 9.5 0.00028 19.6 3.6 31 7-38 10-44 (68)
147 >1p6r_A Penicillinase represso 61.9 12 0.00035 18.9 4.1 49 3-51 7-62 (82)
148 >3eus_A DNA-binding protein; s 60.4 10 0.0003 19.4 3.5 28 9-37 17-45 (86)
149 >2o3f_A Putative HTH-type tran 60.2 8.8 0.00026 19.8 3.2 31 17-48 38-68 (111)
150 >1z6r_A MLC protein; transcrip 60.0 14 0.00042 18.4 4.2 39 7-46 18-60 (107)
151 >1hsj_A Fusion protein consist 59.6 10 0.0003 19.4 3.4 46 3-49 2-53 (87)
152 >2iw5_B Protein corest, REST c 58.4 15 0.00045 18.3 5.5 43 2-44 8-51 (108)
153 >1p4x_A Staphylococcal accesso 58.4 15 0.00045 18.2 4.3 44 5-49 3-52 (95)
154 >1y9q_A Transcriptional regula 58.0 13 0.00039 18.7 3.7 31 9-40 14-45 (76)
155 >1y0u_A Arsenical resistance o 57.6 16 0.00046 18.2 4.3 42 5-48 31-75 (96)
156 >2r1j_L Repressor protein C2; 57.3 13 0.00037 18.8 3.5 27 10-37 9-36 (68)
157 >2z64_C Lymphocyte antigen 96; 56.8 3.5 0.0001 22.4 0.6 21 129-149 69-89 (135)
158 >1h8a_C AMV V-MYB, MYB transfo 56.5 16 0.00048 18.1 5.1 43 2-44 29-73 (128)
159 >2b5a_A C.BCLI; helix-turn-hel 56.5 14 0.00042 18.5 3.7 28 9-37 13-41 (77)
160 >2v79_A DNA replication protei 55.4 11 0.00033 19.1 3.0 39 10-49 25-69 (120)
161 >3g5g_A Regulatory protein; tr 55.0 15 0.00045 18.2 3.7 31 8-39 30-61 (99)
162 >3fym_A Putative uncharacteriz 55.0 15 0.00046 18.2 3.7 27 9-36 6-33 (130)
163 >1x58_A Hypothetical protein 4 54.5 18 0.00052 17.8 4.2 40 2-41 10-53 (62)
164 >3f52_A CLP gene regulator (CL 54.5 14 0.00041 18.5 3.4 30 9-39 31-61 (117)
165 >3fmy_A HTH-type transcription 53.9 16 0.00047 18.1 3.6 31 6-39 14-44 (73)
166 >1y7y_A C.AHDI; helix-turn-hel 53.2 17 0.00051 17.9 3.7 29 10-39 17-46 (74)
167 >3clc_A Regulatory protein; pr 53.1 17 0.00051 17.9 3.7 28 9-37 14-42 (82)
168 >1zug_A Phage 434 CRO protein; 53.0 17 0.00051 17.9 3.7 30 6-38 6-35 (71)
169 >1cg5_B Protein (hemoglobin); 53.0 19 0.00055 17.7 3.9 28 1-29 1-28 (141)
170 >1nr3_A MTH0916, DNA-binding p 52.8 2 5.9E-05 24.0 -1.1 29 16-45 3-33 (46)
171 >1adr_A P22 C2 repressor; tran 52.5 17 0.00049 18.0 3.5 31 6-39 8-38 (76)
172 >2b0l_A GTP-sensing transcript 52.5 12 0.00035 19.0 2.7 24 19-44 44-67 (102)
173 >3kz3_A Repressor protein CI; 52.4 16 0.00046 18.2 3.4 27 10-37 16-43 (80)
174 >1r69_A Repressor protein CI; 52.4 18 0.00053 17.8 3.7 27 10-37 5-32 (69)
175 >2wiu_B HTH-type transcription 51.2 19 0.00057 17.6 3.7 30 9-39 15-45 (88)
176 >1sxj_D Activator 1 41 kDa sub 50.6 11 0.00032 19.2 2.3 25 5-29 26-50 (98)
177 >1utx_A CYLR2; DNA-binding pro 50.5 10 0.0003 19.4 2.2 27 8-37 6-32 (66)
178 >3ivp_A Putative transposon-re 50.4 20 0.0006 17.4 3.7 32 9-41 15-47 (73)
179 >1sfu_A 34L protein; protein/Z 49.9 7.4 0.00022 20.3 1.4 32 16-48 27-61 (75)
180 >1l9z_H Sigma factor SIGA; hel 49.3 17 0.00049 18.0 3.1 28 8-36 6-37 (63)
181 >2kpj_A SOS-response transcrip 49.1 15 0.00045 18.3 2.9 30 8-38 11-41 (94)
182 >2ofy_A Putative XRE-family tr 48.4 21 0.00063 17.3 3.5 28 10-39 20-47 (86)
183 >2ras_A Transcriptional regula 48.3 20 0.00059 17.5 3.4 28 8-36 21-48 (66)
184 >2rn7_A IS629 ORFA; helix, all 48.2 16 0.00048 18.1 2.9 27 15-42 27-53 (108)
185 >2o38_A Hypothetical protein; 47.7 22 0.00066 17.1 3.7 28 9-37 43-71 (120)
186 >3b7h_A Prophage LP1 protein 1 47.0 23 0.00068 17.1 3.9 29 8-37 9-38 (78)
187 >2a6c_A Helix-turn-helix motif 46.3 22 0.00065 17.2 3.4 29 9-38 21-50 (83)
188 >3d1k_B Hemoglobin subunit bet 45.9 24 0.00071 17.0 3.9 28 1-29 1-28 (146)
189 >1x62_A C-terminal LIM domain 45.7 11 0.00031 19.3 1.6 20 150-169 12-31 (32)
190 >2cqr_A RSGI RUH-043, DNAJ hom 45.5 24 0.00072 16.9 3.6 44 2-45 20-68 (73)
191 >1sfx_A Conserved hypothetical 43.9 26 0.00076 16.8 3.6 34 15-49 13-49 (64)
192 >3bro_A Transcriptional regula 43.5 22 0.00065 17.2 3.0 30 19-49 2-34 (51)
193 >3hsr_A HTH-type transcription 43.4 23 0.00068 17.1 3.1 46 4-50 35-84 (119)
194 >1gv2_A C-MYB, MYB proto-oncog 43.1 26 0.00078 16.7 4.1 44 2-45 6-51 (81)
195 >3frw_A Putative Trp repressor 42.9 27 0.00078 16.7 4.6 34 6-42 24-57 (84)
196 >2d9a_A B-MYB, MYB-related pro 42.8 27 0.00079 16.7 4.5 41 2-42 10-52 (60)
197 >2o03_A Probable zinc uptake r 42.0 23 0.00069 17.1 2.9 48 2-49 8-64 (131)
198 >2oo9_A E3 ubiquitin-protein l 41.6 18 0.00052 17.8 2.3 26 10-36 7-32 (46)
199 >2ewt_A BLDD, putative DNA-bin 41.6 28 0.00082 16.5 3.7 28 9-36 11-40 (71)
200 >2w72_B Human hemoglobin A; ir 41.5 28 0.00082 16.5 4.0 28 1-29 1-28 (146)
201 >3bs3_A Putative DNA-binding p 41.5 27 0.00079 16.7 3.2 24 14-38 19-42 (76)
202 >2eby_A Putative HTH-type tran 40.9 19 0.00055 17.7 2.3 30 11-41 16-46 (96)
203 >1x57_A Endothelial differenti 39.5 30 0.00088 16.3 3.4 28 9-37 16-44 (91)
204 >3dp7_A SAM-dependent methyltr 39.0 21 0.00062 17.4 2.3 37 10-48 40-78 (99)
205 >1x41_A Transcriptional adapto 38.7 31 0.00091 16.3 4.9 41 2-42 10-52 (60)
206 >3bom_B Hemoglobin subunit bet 38.7 31 0.00091 16.2 3.9 28 1-29 1-28 (147)
207 >3f8m_A GNTR-family protein tr 38.1 18 0.00054 17.7 1.9 35 8-43 20-60 (77)
208 >2ebi_A DNA binding protein GT 38.1 20 0.00059 17.5 2.1 36 1-36 5-53 (86)
209 >2da4_A Hypothetical protein D 37.9 32 0.00093 16.2 3.7 34 2-36 14-56 (80)
210 >1j1v_A Chromosomal replicatio 37.6 32 0.00095 16.1 3.1 27 17-43 45-71 (94)
211 >1xc5_A Nuclear receptor corep 37.4 24 0.0007 17.0 2.4 44 2-45 22-66 (71)
212 >2ooa_A E3 ubiquitin-protein l 37.2 23 0.00068 17.1 2.3 26 10-36 14-39 (52)
213 >1guu_A C-MYB, MYB proto-oncog 37.1 33 0.00096 16.1 3.1 38 2-39 5-44 (52)
214 >2fu4_A Ferric uptake regulati 36.9 33 0.00097 16.1 3.4 36 2-37 14-56 (83)
215 >1iqp_A RFCS; clamp loader, ex 36.8 33 0.00097 16.1 3.5 30 5-34 19-49 (94)
216 >1sxj_B Activator 1 37 kDa sub 36.3 25 0.00073 16.9 2.3 28 5-32 16-44 (93)
217 >1vf9_A Telomeric repeat bindi 35.7 34 0.001 16.0 4.1 38 2-39 13-52 (64)
218 >3c7j_A Transcriptional regula 35.7 34 0.001 15.9 3.0 26 17-43 48-73 (91)
219 >1w0u_A Telomeric repeat bindi 35.5 34 0.001 15.9 3.9 39 1-39 3-43 (55)
220 >1v4x_B Hemoglobin beta chain; 35.4 34 0.001 15.9 3.9 28 1-29 1-28 (146)
221 >3edp_A LIN2111 protein; APC88 34.9 32 0.00094 16.2 2.7 30 14-44 26-58 (76)
222 >2eqr_A N-COR1, N-COR, nuclear 34.4 36 0.0011 15.8 5.3 42 2-43 14-56 (61)
223 >2d9s_A CBL E3 ubiquitin prote 34.4 25 0.00075 16.8 2.1 26 10-36 12-37 (53)
224 >2juj_A E3 ubiquitin-protein l 34.3 21 0.00061 17.4 1.7 26 10-36 10-35 (56)
225 >2auw_A Hypothetical protein N 34.3 29 0.00086 16.4 2.4 21 16-37 12-32 (81)
226 >1hw1_A FADR, fatty acid metab 34.2 36 0.0011 15.8 2.9 26 18-44 30-56 (77)
227 >1v4r_A Transcriptional repres 33.9 22 0.00064 17.3 1.7 27 17-44 33-60 (102)
228 >1nvp_B Transcription initiati 33.0 20 0.00058 17.5 1.4 22 4-25 34-55 (57)
229 >1l8q_A Chromosomal replicatio 33.0 36 0.0011 15.8 2.7 28 17-44 58-85 (110)
230 >3bru_A Regulatory protein, TE 32.6 31 0.0009 16.3 2.3 20 17-37 49-68 (72)
231 >2d8y_A Eplin protein; LIM dom 32.4 31 0.00093 16.2 2.3 22 148-169 10-31 (43)
232 >1nh2_B Transcription initiati 32.1 15 0.00045 18.3 0.7 22 4-25 30-51 (53)
233 >2hs5_A Putative transcription 31.9 39 0.0011 15.6 2.7 37 6-43 32-75 (94)
234 >2yve_A Transcriptional regula 31.8 32 0.00096 16.1 2.3 24 12-36 15-41 (185)
235 >2fd5_A Transcriptional regula 31.6 40 0.0012 15.5 3.5 27 9-36 18-44 (75)
236 >3dkw_A DNR protein; CRP-FNR, 31.6 35 0.001 15.8 2.5 28 19-47 1-31 (49)
237 >3iyj_F Major capsid protein L 31.6 21 0.00063 17.3 1.4 28 122-149 217-249 (495)
238 >2ph0_A Uncharacterized protei 31.5 40 0.0012 15.5 3.3 27 10-37 4-32 (174)
239 >2d6y_A Putative TETR family r 30.9 41 0.0012 15.4 3.5 21 16-37 26-46 (74)
240 >1qbj_A Protein (double-strand 30.6 41 0.0012 15.4 5.0 38 10-48 15-59 (81)
241 >2w53_A Repressor, SMet; antib 30.5 35 0.001 15.9 2.3 20 17-37 30-49 (219)
242 >2guh_A Putative TETR-family t 30.4 33 0.00099 16.0 2.2 24 13-37 51-77 (214)
243 >1vr4_A Hypothetical protein A 30.4 23 0.00069 17.0 1.4 23 6-38 57-79 (103)
244 >1mzb_A Ferric uptake regulati 29.8 42 0.0013 15.3 4.4 37 1-37 14-57 (86)
245 >1t33_A Putative transcription 29.6 43 0.0013 15.3 3.3 25 11-36 22-48 (224)
246 >1w0t_A Telomeric repeat bindi 29.5 43 0.0013 15.3 3.9 38 2-39 4-43 (53)
247 >2wv0_A YVOA, HTH-type transcr 29.5 43 0.0013 15.3 2.9 25 19-44 34-59 (82)
248 >2rgt_A Fusion of LIM/homeobox 29.1 25 0.00073 16.9 1.3 19 149-167 11-29 (77)
249 >2din_A Cell division cycle 5- 29.0 44 0.0013 15.2 4.6 39 2-41 11-50 (66)
250 >1b8t_A Protein (CRP1); LIM do 28.8 21 0.00062 17.4 0.9 19 149-167 18-36 (57)
251 >2eh3_A Transcriptional regula 28.7 44 0.0013 15.2 3.1 20 17-37 21-40 (179)
252 >3iuv_A Uncharacterized TETR f 28.4 38 0.0011 15.7 2.2 28 8-36 16-47 (201)
253 >3b81_A Transcriptional regula 28.4 45 0.0013 15.2 3.5 25 11-36 21-48 (80)
254 >2yum_A ZZZ3 protein, zinc fin 28.4 45 0.0013 15.2 5.4 42 2-43 10-58 (75)
255 >2aa1_B Hemoglobin beta-C chai 28.3 45 0.0013 15.2 3.9 28 1-29 1-28 (146)
256 >1sd4_A Penicillinase represso 28.2 45 0.0013 15.1 4.1 48 3-50 8-62 (73)
257 >2hyj_A Putative TETR-family t 28.1 39 0.0011 15.6 2.2 25 11-36 22-49 (200)
258 >3fiw_A Putative TETR-family t 28.1 45 0.0013 15.1 3.3 26 11-37 35-63 (88)
259 >3bwg_A Uncharacterized HTH-ty 27.7 46 0.0014 15.1 2.7 35 11-46 19-56 (82)
260 >1jhg_A Trp operon repressor; 27.5 47 0.0014 15.1 4.7 35 6-42 10-44 (65)
261 >2iai_A Putative transcription 27.3 43 0.0013 15.3 2.3 19 17-36 19-37 (200)
262 >1xmk_A Double-stranded RNA-sp 26.9 41 0.0012 15.4 2.2 38 10-48 16-58 (79)
263 >2fe3_A Peroxide operon regula 26.8 48 0.0014 15.0 4.9 49 1-49 18-75 (88)
264 >3h0g_C DNA-directed RNA polym 26.8 15 0.00046 18.2 -0.0 10 39-48 24-33 (132)
265 >3cwr_A Transcriptional regula 26.7 42 0.0012 15.3 2.2 27 9-36 24-54 (208)
266 >1qnt_A Methylated-DNA--protei 26.6 38 0.0011 15.6 2.0 40 5-44 12-55 (74)
267 >2o0y_A Transcriptional regula 26.6 45 0.0013 15.1 2.3 32 16-48 36-70 (95)
268 >2gfn_A HTH-type transcription 26.5 44 0.0013 15.3 2.2 25 11-36 19-46 (209)
269 >2iu5_A DHAS, hypothetical pro 26.5 45 0.0013 15.2 2.3 27 9-36 20-50 (195)
270 >1zk8_A Transcriptional regula 26.4 49 0.0014 14.9 2.8 24 12-36 19-45 (183)
271 >2ibd_A Possible transcription 26.3 43 0.0013 15.3 2.2 24 12-36 25-51 (204)
272 >3eet_A Putative GNTR-family t 26.2 49 0.0014 14.9 3.0 24 19-43 53-77 (96)
273 >3f0c_A TETR-molecule A, trans 26.2 47 0.0014 15.1 2.3 24 12-36 22-48 (216)
274 >2qtq_A Transcriptional regula 26.1 49 0.0015 14.9 2.9 20 16-36 34-53 (81)
275 >1vi0_A Transcriptional regula 26.0 44 0.0013 15.2 2.2 27 9-36 15-45 (206)
276 >2zcm_A Biofilm operon icaabcd 26.0 43 0.0013 15.3 2.2 25 11-36 17-44 (192)
277 >3egq_A TETR family transcript 26.0 44 0.0013 15.2 2.2 19 17-36 23-41 (69)
278 >3c2b_A Transcriptional regula 26.0 44 0.0013 15.2 2.2 24 12-36 26-52 (221)
279 >1mkm_A ICLR transcriptional r 25.4 51 0.0015 14.8 2.9 34 7-41 10-45 (64)
280 >1neq_A DNA-binding protein NE 25.2 51 0.0015 14.8 3.3 36 6-42 10-45 (74)
281 >1sgm_A Putative HTH-type tran 25.2 43 0.0013 15.3 2.0 19 17-36 25-43 (191)
282 >3ihu_A Transcriptional regula 25.2 51 0.0015 14.8 2.7 27 17-44 38-64 (82)
283 >1ojl_A Transcriptional regula 25.0 52 0.0015 14.8 3.8 35 6-41 16-50 (51)
284 >2z99_A Putative uncharacteriz 24.8 52 0.0015 14.8 3.5 43 1-44 11-55 (81)
285 >2k9s_A Arabinose operon regul 24.8 52 0.0015 14.8 4.7 42 4-46 8-52 (61)
286 >2rae_A Transcriptional regula 24.8 47 0.0014 15.0 2.2 19 17-36 36-54 (207)
287 >2ia2_A Putative transcription 24.8 43 0.0013 15.3 1.9 28 8-36 24-53 (86)
288 >1eh6_A O6-alkylguanine-DNA al 24.7 38 0.0011 15.6 1.7 40 5-44 12-55 (74)
289 >3ew0_A Mitoneet, CDGSH iron s 24.6 39 0.0012 15.6 1.7 21 140-160 39-59 (80)
290 >2g7u_A Transcriptional regula 24.6 52 0.0015 14.7 2.4 31 8-39 17-49 (75)
291 >3bqy_A Putative TETR family t 24.3 50 0.0015 14.9 2.2 19 17-36 21-39 (209)
292 >1rzs_A Antirepressor, regulat 24.2 48 0.0014 15.0 2.1 16 20-36 12-27 (61)
293 >2uxu_A HTH-type transcription 24.1 53 0.0016 14.7 2.3 25 11-36 21-48 (210)
294 >2qib_A TETR-family transcript 23.9 54 0.0016 14.6 2.6 20 17-37 32-51 (213)
295 >2hxi_A Putative transcription 23.9 51 0.0015 14.8 2.2 29 8-37 35-67 (241)
296 >2aj4_A Galactokinase; galacto 23.8 54 0.0016 14.6 4.4 25 15-40 86-110 (149)
297 >3bjb_A Probable transcription 23.8 52 0.0015 14.8 2.2 24 12-36 33-59 (207)
298 >3he0_A Transcriptional regula 23.6 55 0.0016 14.6 2.3 27 9-36 18-48 (196)
299 >1qgp_A Protein (double strand 23.5 55 0.0016 14.6 4.7 38 10-48 19-63 (77)
300 >2w57_A Ferric uptake regulati 23.5 55 0.0016 14.6 2.7 48 2-49 14-71 (85)
301 >3knw_A Putative transcription 23.5 55 0.0016 14.6 2.3 20 17-37 33-52 (212)
302 >1out_B Hemoglobin I; heme, ox 23.4 55 0.0016 14.6 4.0 28 1-29 1-28 (146)
303 >3f1b_A TETR-like transcriptio 23.4 52 0.0015 14.7 2.2 28 8-36 20-51 (203)
304 >2zcx_A SCO7815, TETR-family t 23.2 56 0.0016 14.6 2.3 24 12-36 34-60 (231)
305 >1ign_A Protein (RAP1); RAP1,y 23.2 56 0.0016 14.6 3.0 42 2-43 10-58 (93)
306 >3bqz_B HTH-type transcription 23.2 53 0.0016 14.7 2.2 25 11-36 12-39 (71)
307 >3bd1_A CRO protein; transcrip 23.1 51 0.0015 14.8 2.1 28 18-46 11-38 (79)
308 >1b8t_A Protein (CRP1); LIM do 23.0 32 0.00096 16.1 1.0 21 149-169 69-89 (102)
309 >2w84_A Peroxisomal membrane p 22.8 41 0.0012 15.4 1.5 27 4-34 35-61 (70)
310 >2nx4_A Transcriptional regula 22.6 57 0.0017 14.5 2.3 28 8-36 16-47 (194)
311 >3ccy_A Putative TETR-family t 22.5 57 0.0017 14.5 2.2 25 11-36 24-51 (203)
312 >3dew_A Transcriptional regula 22.3 58 0.0017 14.4 3.3 20 16-36 26-45 (72)
313 >2zcw_A TTHA1359, transcriptio 22.2 57 0.0017 14.5 2.2 29 19-48 30-61 (85)
314 >1r8d_A Transcription activato 22.2 57 0.0017 14.5 2.2 27 18-46 2-28 (42)
315 >2vke_A Tetracycline repressor 22.2 58 0.0017 14.4 2.5 20 16-36 21-40 (67)
316 >2id3_A Putative transcription 22.2 58 0.0017 14.4 2.2 19 17-36 59-77 (225)
317 >3dv8_A Transcriptional regula 22.0 59 0.0017 14.4 3.0 27 19-46 24-53 (74)
318 >1sxj_C Activator 1 40 kDa sub 22.0 59 0.0017 14.4 3.4 26 5-30 19-45 (102)
319 >3jsj_A Putative TETR-family t 21.9 59 0.0017 14.4 2.3 25 11-36 19-45 (190)
320 >2vpr_A Tetracycline resistanc 21.9 59 0.0017 14.4 3.6 25 11-36 14-41 (68)
321 >1dec_A Decorsin; blood coagul 21.9 30 0.00088 16.3 0.7 13 126-138 23-35 (39)
322 >3cdl_A Transcriptional regula 21.8 59 0.0017 14.4 2.2 25 11-36 19-46 (51)
323 >2g7l_A TETR-family transcript 21.6 60 0.0018 14.3 2.2 27 9-36 26-56 (243)
324 >2g7g_A RHA04620, putative tra 21.5 60 0.0018 14.3 4.1 28 8-36 17-46 (213)
325 >2nvw_A Galactose/lactose meta 21.4 35 0.001 15.9 0.9 10 34-43 178-187 (260)
326 >3crj_A Transcription regulato 21.1 61 0.0018 14.3 2.3 24 12-36 25-51 (199)
327 >2qko_A Possible transcription 21.1 48 0.0014 14.9 1.6 23 13-36 40-65 (215)
328 >1ui5_A A-factor receptor homo 20.9 62 0.0018 14.3 2.3 28 8-36 15-46 (215)
329 >2hku_A A putative transcripti 20.7 58 0.0017 14.4 2.0 27 9-36 27-56 (215)
330 >3e6c_C CPRK, cyclic nucleotid 20.6 63 0.0019 14.2 3.0 28 19-47 31-61 (103)
331 >3g7r_A Putative transcription 20.6 63 0.0019 14.2 3.1 19 17-36 54-72 (221)
332 >3ljl_A Transcriptional regula 20.4 63 0.0019 14.2 3.1 26 10-36 26-51 (60)
333 >3by6_A Predicted transcriptio 20.3 64 0.0019 14.2 2.9 26 20-46 37-62 (106)
334 >2dlo_A Thyroid receptor-inter 20.3 21 0.00063 17.3 -0.3 11 151-161 2-12 (47)
335 >2o7t_A Transcriptional regula 20.3 64 0.0019 14.2 2.6 20 16-36 26-45 (50)
336 >2vn2_A DNAD, chromosome repli 20.2 64 0.0019 14.2 3.2 33 10-43 26-61 (65)
337 >2id6_A Transcriptional regula 20.1 64 0.0019 14.1 3.6 27 9-36 16-42 (77)
338 >2chq_A Replication factor C s 20.1 64 0.0019 14.1 3.7 30 5-34 19-49 (94)
No 1
>>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} (A:142-183)
Probab=96.56 E-value=0.0022 Score=43.44 Aligned_cols=29 Identities=31% Similarity=0.645 Sum_probs=25.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCHHHHH
Q ss_conf 999999998186588999996785434666
Q gi|254780431|r 8 IDKLKKFWSEGLSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 8 ve~LkkLW~eG~SasqIA~~lGgvtRNAVI 37 (178)
.+....|+.+|+++++||++|| ++|..|-
T Consensus 7 ~~~V~~L~~~G~g~t~IAk~Lg-I~R~sVY 35 (42)
T 1gdt_A 7 RDAVLNMWQQGLGASHISKTMN-IARSTVY 35 (42)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHT-CCHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHC-CCHHHHH
T ss_conf 9999999987999999999989-2999999
No 2
>>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} (C:)
Probab=95.98 E-value=0.0051 Score=41.04 Aligned_cols=37 Identities=11% Similarity=0.293 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf 77899999999998186588999996785434666677
Q gi|254780431|r 3 WTVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKL 40 (178)
Q Consensus 3 WTderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~ 40 (178)
-|+|.++.++.|-.+|.|.+|||+.|| |||..|---.
T Consensus 6 lt~eq~~~a~~l~~~G~s~~~iA~~~g-VSr~TiYr~l 42 (52)
T 1jko_C 6 INKHEQEQISRLLEKGHPRQQLAIIFG-IGVSTLYRYF 42 (52)
T ss_dssp SCTTHHHHHHHHHHTTCCHHHHHHTTS-CCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHC
T ss_conf 999999999999987998999999989-7999999984
No 3
>>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus} (C:151-209)
Probab=94.97 E-value=0.032 Score=35.83 Aligned_cols=37 Identities=30% Similarity=0.362 Sum_probs=32.4
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 99999981865889999967854346666777514554
Q gi|254780431|r 10 KLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRLFLSN 47 (178)
Q Consensus 10 ~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRLgLs~ 47 (178)
...++-.+|.+.|.||++.| |||+.|.---+.|+|+.
T Consensus 17 rVv~mL~~G~~is~IAk~~g-isRqTVYRIK~dl~l~~ 53 (59)
T 2r0q_C 17 RVVEMLEEGQAISKIAKEVN-ITRQTVYRIKHDNGLSS 53 (59)
T ss_dssp HHHHHHHTTCCHHHHHHHHT-CCHHHHHHHHTTCC---
T ss_pred HHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHCCCCC
T ss_conf 99999987799999999989-69999999999779984
No 4
>>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} (C:17-69)
Probab=92.77 E-value=0.24 Score=30.07 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf 9999999999818658899999678543466667775145544
Q gi|254780431|r 6 ERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRLFLSNR 48 (178)
Q Consensus 6 erve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRLgLs~R 48 (178)
|=-+++-+++.+|+|..|||++|| ||+|.|+-=++|.--.+.
T Consensus 5 DlR~riv~~~~~G~s~~~aA~~f~-VS~~tv~k~~~r~~etG~ 46 (53)
T 1pdn_C 5 NIRLKIVEMAADGIRPCVISRQLR-VSHGCVSKILNRYQETGS 46 (53)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHT-CCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCC
T ss_conf 999999999986999999999889-689999999999873598
No 5
>>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens} (A:1-75)
Probab=91.60 E-value=0.37 Score=28.84 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf 7789999999999818658899999678543466667775145544
Q gi|254780431|r 3 WTVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRLFLSNR 48 (178)
Q Consensus 3 WTderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRLgLs~R 48 (178)
.+.|--++.-+++.+|+|..+||++|| ||.|.|+--++|.--.+.
T Consensus 26 lS~DLR~rIV~~~~~G~s~r~iArrf~-VS~stv~kwl~R~reTGs 70 (75)
T 2k27_A 26 LPEVVRQRIVDLAHQGVRPCDISRQLR-VSHGCVSKILGRYYETGS 70 (75)
T ss_dssp SCHHHHHHHHHHHHHTCCHHHHHHHHT-CCSHHHHHHHCCSSTTSC
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHHHCCCC
T ss_conf 989999999999975998999998877-659899999999863685
No 6
>>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} (A:1-55)
Probab=91.00 E-value=0.62 Score=27.37 Aligned_cols=43 Identities=12% Similarity=0.234 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHCC-CCHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 977789999999999818-65889999967854346666777514
Q gi|254780431|r 1 MVWTVERIDKLKKFWSEG-LSASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 1 MsWTderve~LkkLW~eG-~SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
|.-++--...|..|=.+| .|.++||++|| +|+.+|-..+.||-
T Consensus 1 m~lD~~D~~IL~~L~~~~r~s~~eia~~lg-is~~tv~~ri~rL~ 44 (55)
T 2cfx_A 1 MKLDQIDLNIIEELKKDSRLSMRELGRKIK-LSPPSVTERVRQLE 44 (55)
T ss_dssp CCCCHHHHHHHHHHHHCSCCCHHHHHHHHT-CCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf 987889999999999848999999999988-58889999999872
No 7
>>2oqg_A Possible transcriptional regulator, ARSR family protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} (A:1-79)
Probab=91.00 E-value=0.46 Score=28.25 Aligned_cols=43 Identities=30% Similarity=0.319 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCC
Q ss_conf 7899999999998186588999996785434666677751---4554
Q gi|254780431|r 4 TVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSN 47 (178)
Q Consensus 4 Tderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~ 47 (178)
.+-|...|+-|+.++.+++|||++|| +++++|.--.-.| ||-.
T Consensus 20 ~~~R~~Il~~L~~~~~~~~ela~~l~-is~~tvS~HL~~L~~aglv~ 65 (79)
T 2oqg_A 20 DETRWEILTELGRADQSASSLATRLP-VSRQAIAKHLNALQACGLVE 65 (79)
T ss_dssp CHHHHHHHHHHHHSCBCHHHHHHHSS-SCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCCE
T ss_conf 99999999999649987447798868-99889999998999889770
No 8
>>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} (A:1-53)
Probab=90.56 E-value=0.42 Score=28.49 Aligned_cols=34 Identities=9% Similarity=0.106 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH
Q ss_conf 77899999999998186588999996785434666
Q gi|254780431|r 3 WTVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 3 WTderve~LkkLW~eG~SasqIA~~lGgvtRNAVI 37 (178)
-||+--.++.-+-..|+|-.+||++|| -|||.|=
T Consensus 7 Lt~~E~~~I~~~~~~g~s~~eIArki~-RS~~vi~ 40 (53)
T 1u78_A 7 LSDTERAQLDVMKLLNVSLHEMSRKIS-RSRHCIR 40 (53)
T ss_dssp CCHHHHHHHHHHHHTTCCHHHHHHHHT-CCHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHC-CCHHHHH
T ss_conf 999999999999997999999999989-5899999
No 9
>>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} (A:90-239)
Probab=90.46 E-value=0.49 Score=28.03 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 7899999999998186588999996785434666677751
Q gi|254780431|r 4 TVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 4 Tderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
+++--+.+.-.--+|+|..+||+.|| +|.|+|=-..||-
T Consensus 100 ~~~~r~vi~l~~~~g~s~~EIA~~lg-is~~tV~~~l~ra 138 (150)
T 1rp3_A 100 PEREKLVIQLIFYEELPAKEVAKILE-TSVSRVSQLKAKA 138 (150)
T ss_dssp CHHHHHHHHHHHTSCCCHHHHHHHTT-SCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf 99999999999269999999999989-5999999999999
No 10
>>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} (A:1-73)
Probab=89.86 E-value=0.73 Score=26.90 Aligned_cols=38 Identities=26% Similarity=0.544 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 789999999999818658899999678543466667775
Q gi|254780431|r 4 TVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHR 42 (178)
Q Consensus 4 Tderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hR 42 (178)
+++--+.+.-..-+|+|.+|||+.|| +|.++|=-..||
T Consensus 24 ~~~~r~v~~l~~~~g~s~~eIA~~lg-is~~~v~~~l~r 61 (73)
T 1s7o_A 24 TDKQMNYIELYYADDYSLAEIADEFG-VSRQAVYDNIKR 61 (73)
T ss_dssp CHHHHHHHHHHHHTCCCHHHHHHHHT-CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_conf 99999999999997312999999989-799999999999
No 11
>>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} (A:1-56)
Probab=89.29 E-value=0.58 Score=27.58 Aligned_cols=41 Identities=24% Similarity=0.343 Sum_probs=33.1
Q ss_pred CC---CCHHHHHHHHHHHH--CCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 97---77899999999998--18658899999678543466667775
Q gi|254780431|r 1 MV---WTVERIDKLKKFWS--EGLSASQIAVQLGGVTRNAVIGKLHR 42 (178)
Q Consensus 1 Ms---WTderve~LkkLW~--eG~SasqIA~~lGgvtRNAVIGK~hR 42 (178)
|+ |++|==+..-+|.. .|.|.++||++|| |+.|.|--=+..
T Consensus 1 M~rr~ys~EFK~~aV~l~~~~~g~sv~~vA~~~g-i~~~tl~~Wvk~ 46 (56)
T 2jn6_A 1 MPTKTYSEEFKRDAVALYENSDGASLQQIANDLG-INRVTLKNWIIK 46 (56)
T ss_dssp CCCCCCCHHHHHHHHHHHTTGGGSCHHHHHHHHT-SCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHC-CCCCHHHHHHHH
T ss_conf 9359899999999999999838983999999969-982130399999
No 12
>>3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis} (A:149-195)
Probab=89.23 E-value=0.55 Score=27.72 Aligned_cols=31 Identities=29% Similarity=0.330 Sum_probs=24.3
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99999981865889999967854346666777
Q gi|254780431|r 10 KLKKFWSEGLSASQIAVQLGGVTRNAVIGKLH 41 (178)
Q Consensus 10 ~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~h 41 (178)
..-.|+.+|+|..|||.+|| +|.+.|=--..
T Consensus 8 ~vl~~l~~G~s~~eIA~~L~-iS~~TV~~~~~ 38 (47)
T 3c3w_A 8 TLLGLLSEGLTNKQIADRMF-LAEKTVKNYVS 38 (47)
T ss_dssp HHHHHHHTTCCHHHHHHHHT-CCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHC-CCHHHHHHHHH
T ss_conf 99999995799999999978-87889999999
No 13
>>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} (A:1-54)
Probab=89.13 E-value=0.4 Score=28.59 Aligned_cols=37 Identities=16% Similarity=0.385 Sum_probs=26.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCHHHH---HHHHHHHCC
Q ss_conf 99999999818658899999678543466---667775145
Q gi|254780431|r 8 IDKLKKFWSEGLSASQIAVQLGGVTRNAV---IGKLHRLFL 45 (178)
Q Consensus 8 ve~LkkLW~eG~SasqIA~~lGgvtRNAV---IGK~hRLgL 45 (178)
+....-.+.+|+|.+|||++|| +||.-| +.++...|+
T Consensus 11 ~~va~lYY~~gltQ~eIA~~lg-iSR~~VsRlL~~Ar~~Gi 50 (54)
T 2w48_A 11 VKIAQLYYEQDMTQAQIARELG-IYRTTISRLLKRGREQGI 50 (54)
T ss_dssp HHHHHHHHTSCCCHHHHHHHTT-CCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCE
T ss_conf 9999999834999999999869-899999999999997690
No 14
>>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} (A:1-141)
Probab=88.63 E-value=0.73 Score=26.89 Aligned_cols=47 Identities=15% Similarity=0.058 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHH-----HCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCCC
Q ss_conf 7789999999999-----8186588999996785434666677751---4554455
Q gi|254780431|r 3 WTVERIDKLKKFW-----SEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRVK 50 (178)
Q Consensus 3 WTderve~LkkLW-----~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~~ 50 (178)
=|....+.|+-+| ..+++.++||+.|| ||+.+|-+-+.|| ||--+..
T Consensus 4 Lt~~q~~~L~~I~~l~~~~~~v~~~eLA~~l~-vs~~tvt~~l~kLe~~glv~~~~ 58 (141)
T 1fx7_A 4 LVDTTEMYLRTIYDLEEEGVTPLRARIAERLD-QSGPTVSQTVSRMERDGLLRVAG 58 (141)
T ss_dssp TSSHHHHHHHHHHHHHHHTSCCCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEECT
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC-CCCHHHHHHHHHHHHCCCEEECC
T ss_conf 67789999999999984499751999999978-99168999999998799889739
No 15
>>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} (A:29-94)
Probab=88.16 E-value=1.2 Score=25.60 Aligned_cols=45 Identities=29% Similarity=0.433 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 789999999999-8186588999996785434666677751---455445
Q gi|254780431|r 4 TVERIDKLKKFW-SEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 4 Tderve~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
|-.....|.-|| .+|+|.++||+.+| ++++++-.-+.+| ||-.|.
T Consensus 4 s~~~~~vL~~l~~~~~~t~~~la~~~~-~s~~~~s~~i~~L~~~Glv~r~ 52 (66)
T 2a61_A 4 TPAQFDILQKIYFEGPKRPGELSVLLG-VAKSTVTGLVKRLEADGYLTRT 52 (66)
T ss_dssp CHHHHHHHHHHHHHCCBCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHCC-CCHHHHHHHHHHHHCCCCEEEE
T ss_conf 999999999998769989999998829-8988999999999724686642
No 16
>>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} (A:129-215)
Probab=88.09 E-value=1 Score=25.88 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=27.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999999998186588999996785434666677751
Q gi|254780431|r 7 RIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 7 rve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
+--..-.|+.+|+|..|||.+|| +|.+.|=-...++
T Consensus 30 ~E~~vl~l~~~G~s~~eIA~~L~-iS~~TV~~~~~~i 65 (87)
T 1a04_A 30 RERDILKLIAQGLPNKMIARRLD-ITESTVKVHVKHM 65 (87)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHT-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCEEHHHHC-CCHHHHHHHHHHH
T ss_conf 99999999984998440189868-7577999999999
No 17
>>1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} (A:28-122)
Probab=88.00 E-value=0.71 Score=26.98 Aligned_cols=44 Identities=25% Similarity=0.166 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 8999999999981-86588999996785434666677751---455445
Q gi|254780431|r 5 VERIDKLKKFWSE-GLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 5 derve~LkkLW~e-G~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
..|...|..|+.+ +++.++|++.|| +|+.+|---...| ||-...
T Consensus 15 ~tR~~Il~~L~~~~~~~v~eL~~~l~-is~s~vs~HL~~L~~~GlV~~~ 62 (95)
T 1u2w_A 15 ENRAKITYALCQDEELCVCDIANILG-VTIANASHHLRTLYKQGVVNFR 62 (95)
T ss_dssp HHHHHHHHHHHHSSCEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCEEEEE
T ss_conf 99999999998879906999998884-5700799999999988925899
No 18
>>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} (A:174-234)
Probab=87.71 E-value=0.98 Score=26.06 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=27.4
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999998186588999996785434666677751
Q gi|254780431|r 10 KLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 10 ~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
..=.|+.+|+|..|||.+|| +|-+.|-..+.++
T Consensus 7 ~vl~l~~~G~s~~eIA~~L~-is~~TV~~~~~~i 39 (61)
T 1l3l_A 7 TYLRWIAVGKTXEEIADVEG-VKYNSVRVKLREA 39 (61)
T ss_dssp HHHHHHTTTCCHHHHHHHHT-CCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf 99999975999999999969-8999999999999
No 19
>>2p8t_A Hypothetical protein PH0730; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.80A {Pyrococcus horikoshii OT3} (A:)
Probab=87.70 E-value=0.67 Score=27.14 Aligned_cols=43 Identities=26% Similarity=0.278 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHH---HHHHHHHCCCCC
Q ss_conf 89999999999818658899999678543466---667775145544
Q gi|254780431|r 5 VERIDKLKKFWSEGLSASQIAVQLGGVTRNAV---IGKLHRLFLSNR 48 (178)
Q Consensus 5 derve~LkkLW~eG~SasqIA~~lGgvtRNAV---IGK~hRLgLs~R 48 (178)
++++-.......+|++.++||++|| +||-.| +-++-..||-.-
T Consensus 17 ~~~~~~~~~yy~e~~tq~eIA~~Lg-iSr~~V~r~L~~a~~~GlV~i 62 (200)
T 2p8t_A 17 VEDVLAVIFLLKEPLGRKQISERLE-LGEGSVRTLLRKLSHLDIIRS 62 (200)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEE
T ss_conf 8999999998348855899998809-827899999999976896896
No 20
>>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} (A:)
Probab=87.59 E-value=0.6 Score=27.45 Aligned_cols=47 Identities=21% Similarity=0.130 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHH-----HCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 77789999999999-----8186588999996785434666677751---455445
Q gi|254780431|r 2 VWTVERIDKLKKFW-----SEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 2 sWTderve~LkkLW-----~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
..|+...+.|+-+| ..+.+.++||+.|| ||+.+|-.-+.|| ||--+.
T Consensus 33 ~lt~~~~~~L~~I~~l~~~~~~v~~~dlA~~l~-vs~~tv~~~l~~L~~~Gli~~~ 87 (155)
T 2h09_A 33 HRRELIDDYVELISDLIREVGEARQVDMAARLG-VSQPTVAKMLKRLATMGLIEMI 87 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHT-SCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEC
T ss_conf 164579999999999982279773999998859-8857899999999769977754
No 21
>>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} (A:117-194)
Probab=87.56 E-value=1.1 Score=25.86 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=28.5
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999999998186588999996785434666677751
Q gi|254780431|r 7 RIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 7 rve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
.-+.+....-+|+|..+||+.|| +|.|+|-...||-
T Consensus 29 ~r~i~~l~~~~~~s~~eIA~~lg-is~~tv~~~l~ra 64 (78)
T 1or7_A 29 LRMAITLRELDGLSYEEIAAIMD-CPVGTVRSRIFRA 64 (78)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHTT-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf 99999999980979999999989-4999999999999
No 22
>>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A (A:1-122)
Probab=87.53 E-value=1.3 Score=25.29 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHC-CCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 7778999999999981-86588999996785434666677751---455445
Q gi|254780431|r 2 VWTVERIDKLKKFWSE-GLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 2 sWTderve~LkkLW~e-G~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
..|-..+..|.-||.. |+|.++||+.+| +++.+|-.-+.+| ||-.|.
T Consensus 34 ~lt~~~~~iL~~l~~~~~~t~~~la~~~~-~~~~~vs~~i~~L~~~G~I~r~ 84 (122)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQDLGRQMC-RDKALITRKIRELEGRNLVRRE 84 (122)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHHHHHHHC----CHHHHHHHHHHHTTSEEC-
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHCEEEC
T ss_conf 98999999999999879989999999979-3572699999999996132000
No 23
>>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} (A:)
Probab=87.46 E-value=1.6 Score=24.71 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf 89999999999818658899999678543466667775145544
Q gi|254780431|r 5 VERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRLFLSNR 48 (178)
Q Consensus 5 derve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRLgLs~R 48 (178)
-|+--++..|=..+-.-++.|+.|| +||..+--|+.++||..+
T Consensus 19 ~Er~~i~~aL~~~~gn~~~aA~~Lg-isr~tL~~klkk~gi~~~ 61 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEIG-IDLSNLYRKIKSLNIRVK 61 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHT-CCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHC-CCHHHHHHHHHHHCCCCC
T ss_conf 9999999999991998999999989-599999999999489957
No 24
>>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A (A:1-121)
Probab=87.29 E-value=0.89 Score=26.35 Aligned_cols=46 Identities=20% Similarity=0.108 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 77899999999998186588999996785434666677751---455445
Q gi|254780431|r 3 WTVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 3 WTderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
-|......|.-||.+++|.++|++.+| +++.+|-.-+.+| ||-.|.
T Consensus 35 lt~~q~~vL~~l~~~~~t~~~la~~~~-~~~~~vs~~i~~L~~~gli~r~ 83 (121)
T 2gxg_A 35 LSYLDFLVLRATSDGPKTMAYLANRYF-VTQSAITASVDKLEEMGLVVRV 83 (121)
T ss_dssp CCHHHHHHHHHHTTSCBCHHHHHHHTT-CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEE
T ss_conf 799999999999859979999999989-7987999999999878882342
No 25
>>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium} (A:)
Probab=87.19 E-value=0.9 Score=26.30 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=28.6
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH----HCCCCC
Q ss_conf 999999818658899999678543466667775----145544
Q gi|254780431|r 10 KLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHR----LFLSNR 48 (178)
Q Consensus 10 ~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hR----LgLs~R 48 (178)
..=.|+.+|+|..|||++|| +|.+.|-.-..+ ||..+|
T Consensus 5 evl~~~~~G~s~~eIA~~l~-iS~~TV~~~~~~i~~Klgv~~~ 46 (61)
T 2jpc_A 5 QVLKLIDEGYTNHGISEKLH-ISIKTVETHRMNMMRKLQVHKV 46 (61)
T ss_dssp HHHHHHHTSCCSHHHHHHTC-SCHHHHHHHHHHHHHHHTCSSH
T ss_pred HHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999982799999998969-8899999999999998199999
No 26
>>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} (A:48-125)
Probab=86.80 E-value=1.3 Score=25.28 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHCC-CCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 789999999999818-6588999996785434666677751---455445
Q gi|254780431|r 4 TVERIDKLKKFWSEG-LSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 4 Tderve~LkkLW~eG-~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
|......|.-||..| +|.++||+.+| +|+.+|=.-+.+| |+-.|.
T Consensus 4 ~~~~~~iL~~l~~~g~~t~~ela~~~~-~~~~~vs~~i~~L~~~g~i~~~ 52 (78)
T 3cjn_A 4 STAKXRALAILSAKDGLPIGTLGIFAV-VEQSTLSRALDGLQADGLVRRE 52 (78)
T ss_dssp CHHHHHHHHHHHHSCSEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHC-CCCCCCHHHHHHHHHHHHHEEE
T ss_conf 999999999998479989999999978-8833245889999998854011
No 27
>>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti} (A:)
Probab=86.75 E-value=1.1 Score=25.68 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=28.5
Q ss_pred HHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH----CCCCC
Q ss_conf 999998186588999996785434666677751----45544
Q gi|254780431|r 11 LKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL----FLSNR 48 (178)
Q Consensus 11 LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL----gLs~R 48 (178)
.-.|+.+|+|..|||++|| +|-+.|-.-..++ |..+|
T Consensus 24 vl~~~~~G~s~~eIA~~L~-is~~TV~~~~~~i~~Kl~~~~r 64 (79)
T 1x3u_A 24 VLSAVVAGLPNKSIAYDLD-ISPRTVEVHRANVMAKMKAKSL 64 (79)
T ss_dssp HHHHHTTTCCHHHHHHHTT-SCHHHHHHHHHHHHHHTTCCSH
T ss_pred HHHHHHHCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHCCCCH
T ss_conf 9999993699999988989-7899999999999998289999
No 28
>>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, activation, DNA-binding, ferrous iron, cytoplasm; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... (A:1-146)
Probab=86.71 E-value=1 Score=26.00 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHHH-----CCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCCC
Q ss_conf 9777899999999998-----186588999996785434666677751---4554455
Q gi|254780431|r 1 MVWTVERIDKLKKFWS-----EGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRVK 50 (178)
Q Consensus 1 MsWTderve~LkkLW~-----eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~~ 50 (178)
|.=|+--.+.|+.+|. .+++.++||+.|| ||+.+|..-+.|| ||--|..
T Consensus 2 ~~lt~~~~~~L~~i~~l~~~~~~v~~~elA~~l~-vs~~svt~~i~rLe~~GlI~~~~ 58 (146)
T 2qq9_A 2 KDLVATTEMYLRTIYELEEEGVTPLRARIAERLE-QSGPTVSQTVARMERDGLVVVAS 58 (146)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCCBHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEECT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 8676019999999999986599761999999978-99279999999999779952058
No 29
>>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulator; 2.05A {Bacillus subtilis} (A:)
Probab=86.67 E-value=1.2 Score=25.43 Aligned_cols=33 Identities=12% Similarity=0.212 Sum_probs=26.5
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999998186588999996785434666677751
Q gi|254780431|r 10 KLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 10 ~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
..=.++.+|+|..|||.+|| +|-.+|-.-..++
T Consensus 18 ~vl~~~~~G~s~~eIA~~l~-is~~TV~~~~~~i 50 (74)
T 1fse_A 18 EVFELLVQDKTTKEIASELF-ISEKTVRNHISNA 50 (74)
T ss_dssp HHHHHHTTTCCHHHHHHHHT-SCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf 99999992799999999968-9877999999999
No 30
>>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster} (A:)
Probab=86.34 E-value=1.2 Score=25.41 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 778999999999981865889999967854346666777514
Q gi|254780431|r 3 WTVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 3 WTderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
+|+|-...+-+|-..|.|.++||++|| |+.|.+-.=+...+
T Consensus 23 yt~efK~~av~~~~~G~sv~eva~~~g-Is~stl~~W~k~~~ 63 (87)
T 2elh_A 23 LTPRDKIHAIQRIHDGESKASVARDIG-VPESTLRGWCKNED 63 (87)
T ss_dssp CCHHHHHHHHHHHHHTCCHHHHHHHHT-CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf 899999999999872699999999979-69999999999999
No 31
>>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} (A:100-158)
Probab=86.30 E-value=1.6 Score=24.69 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999999998186588999996785434666677
Q gi|254780431|r 6 ERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKL 40 (178)
Q Consensus 6 erve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~ 40 (178)
|....+++|=.+|.|..+||+.|| +|+.-|=+..
T Consensus 23 E~a~a~~~l~~~g~s~~~iA~~~G-~s~~~V~~~L 56 (59)
T 1vz0_A 23 EEARGYQALLEMGLTQEEVARRVG-KARSTVANAL 56 (59)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHT-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHH
T ss_conf 999999989998872999998759-9999985677
No 32
>>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} (A:45-122)
Probab=86.14 E-value=0.84 Score=26.51 Aligned_cols=44 Identities=25% Similarity=0.288 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 899999999998186588999996785434666677751---455445
Q gi|254780431|r 5 VERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 5 derve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
..|.++|..|...+++.+|||+.|| +|+.+|---...| ||-...
T Consensus 2 p~Rl~Il~~L~~~~~~~~ela~~l~-~s~stvs~HL~~L~~aGlv~~~ 48 (78)
T 1r1t_A 2 PNRLRLLSLLARSELCVGDLAQAIG-VSESAVSHQLRSLRNLRLVSYR 48 (78)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEE
T ss_conf 9999999999819956999999989-1988999999999988913789
No 33
>>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} (A:1-122)
Probab=86.04 E-value=1.5 Score=24.86 Aligned_cols=45 Identities=22% Similarity=0.136 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH---HCCCCCC
Q ss_conf 789999999999818658899999678543466667775---1455445
Q gi|254780431|r 4 TVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHR---LFLSNRV 49 (178)
Q Consensus 4 Tderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hR---LgLs~R~ 49 (178)
|..-...|.-|+.+|++.++||+.+| +++.+|---+-+ .||-.|.
T Consensus 36 t~~~~~iL~~i~~~~~t~~ela~~~~-~~~~~vs~~i~~L~~~gli~r~ 83 (122)
T 3f3x_A 36 SYLDFSILKATSEEPRSMVYLANRYF-VTQSAITAAVDKLEAKGLVRRI 83 (122)
T ss_dssp CHHHHHHHHHHHHSCEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEC
T ss_conf 99999999999929919999999979-7886899999999967880131
No 34
>>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=85.71 E-value=1.9 Score=24.11 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=38.1
Q ss_pred CCCCHHHHHH-HHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 9777899999-999998186588999996785434666677751455
Q gi|254780431|r 1 MVWTVERIDK-LKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRLFLS 46 (178)
Q Consensus 1 MsWTderve~-LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRLgLs 46 (178)
..||+|.++. |......++|..+.|+..| |.|+.+..+++.....
T Consensus 12 ~~yt~e~l~~Ai~aV~~g~mS~~~As~~y~-IP~sTL~~ri~g~~~~ 57 (70)
T 2cob_A 12 RQYNSEILEEAISVVMSGKMSVSKAQSIYG-IPHSTLEYKVKERLGT 57 (70)
T ss_dssp CCCCHHHHHHHHHHHHTTSSCHHHHHHHHT-CCHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHCCEEEHHCCCCCC-CCCCHHHHHHHHHHHH
T ss_conf 336888999999999835412220375305-7650111227765544
No 35
>>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str} (A:1-53)
Probab=85.67 E-value=1.3 Score=25.33 Aligned_cols=39 Identities=10% Similarity=0.194 Sum_probs=31.5
Q ss_pred HHHHHHHH-HHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 99999999-98186588999996785434666677751455
Q gi|254780431|r 7 RIDKLKKF-WSEGLSASQIAVQLGGVTRNAVIGKLHRLFLS 46 (178)
Q Consensus 7 rve~LkkL-W~eG~SasqIA~~lGgvtRNAVIGK~hRLgLs 46 (178)
-...|+.| ...-+|.++||++|| +|+.+|--.+.||-=.
T Consensus 5 D~~IL~~L~~dar~s~~elA~~lg-is~~~v~~Ri~~L~~~ 44 (53)
T 3i4p_A 5 DRKILRILQEDSTLAVADLAKKVG-LSTTPCWRRIQKXEED 44 (53)
T ss_dssp HHHHHHHHTTCSCSCHHHHHHHHT-CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHC
T ss_conf 999999999858999999999989-1999999999999837
No 36
>>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} (A:30-120)
Probab=85.45 E-value=2 Score=24.02 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHH-CCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 7899999999998-186588999996785434666677751---455445
Q gi|254780431|r 4 TVERIDKLKKFWS-EGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 4 Tderve~LkkLW~-eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
|......|.-||. .|+|.++||+.|| +++.+|=.-+.+| ||-.|.
T Consensus 1 t~~q~~iL~~l~~~~~~t~~eia~~l~-~~~~~vs~~i~~L~~~g~i~~~ 49 (91)
T 3g3z_A 1 NYNLFAVLYTLATEGSRTQKHIGEKWS-LPKQTVSGVCKTLAGQGLIEWQ 49 (91)
T ss_dssp CHHHHHHHHHHHHHCSBCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEC
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCHHEE
T ss_conf 999999999999869949999999989-7898999999999831002000
No 37
>>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (F:336-423)
Probab=85.38 E-value=0.61 Score=27.42 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=24.5
Q ss_pred HCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 8186588999996785434666677751
Q gi|254780431|r 16 SEGLSASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 16 ~eG~SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
-+|+|..+||..|| +|.|.|-...||-
T Consensus 43 ~e~~s~~eIA~~lg-is~~tV~~~~~ra 69 (88)
T 2a6h_F 43 GREHTLEEVGAFFG-VTRERIRQIENKA 69 (88)
T ss_dssp C-----CHHHHSSS-SCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf 98603999999989-6999999999999
No 38
>>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} (A:)
Probab=85.17 E-value=0.96 Score=26.11 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=37.4
Q ss_pred CCCHH-HHHHHHHHHHCC-CCHHHHHHHHC-CCCHHHHHHHHHHH---CCCCCCC
Q ss_conf 77789-999999999818-65889999967-85434666677751---4554455
Q gi|254780431|r 2 VWTVE-RIDKLKKFWSEG-LSASQIAVQLG-GVTRNAVIGKLHRL---FLSNRVK 50 (178)
Q Consensus 2 sWTde-rve~LkkLW~eG-~SasqIA~~lG-gvtRNAVIGK~hRL---gLs~R~~ 50 (178)
+|.|. +...|.-|=.+| +|.++||+.|| .+|+++|-=....| ||-.+..
T Consensus 9 ~w~~ptd~~ILe~L~~~g~~s~~eIA~~lgi~~S~~~Vs~~l~~L~~~GLve~~~ 63 (111)
T 3b73_A 9 SWXTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLA 63 (111)
T ss_dssp TTCCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECS
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 4345448999999987378888898861366833889999999999778755379
No 39
>>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} (A:)
Probab=85.16 E-value=1.1 Score=25.67 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=28.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH----HCCCCC
Q ss_conf 99999999818658899999678543466667775----145544
Q gi|254780431|r 8 IDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHR----LFLSNR 48 (178)
Q Consensus 8 ve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hR----LgLs~R 48 (178)
--..=.|+.+|+|..+||.+|| +|.+.|=--+.+ ||.++|
T Consensus 26 E~~Vl~ll~~G~s~~~IA~~L~-iS~~TV~~~~~~i~~Klgv~~r 69 (82)
T 1je8_A 26 ERDILKLIAQGLPNKXIARRLD-ITESTVKVHVKHXLKKXKLKSR 69 (82)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHT-SCHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHCCCCH
T ss_conf 9999999992899999976848-8899999999999998289999
No 40
>>3c57_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A (A:)
Probab=84.94 E-value=1.1 Score=25.68 Aligned_cols=45 Identities=29% Similarity=0.318 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH----HCCCCCCC
Q ss_conf 789999999999818658899999678543466667775----14554455
Q gi|254780431|r 4 TVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHR----LFLSNRVK 50 (178)
Q Consensus 4 Tderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hR----LgLs~R~~ 50 (178)
|+--.+.| +|+.+|+|..+||.+|| +|-+.|=--..+ ||..+|.-
T Consensus 29 T~rE~~vl-~ll~~G~s~~eIA~~L~-iS~~TV~~~~~~i~~Klgv~~r~e 77 (95)
T 3c57_A 29 TDQERTLL-GLLSEGLTNKQIADRMF-LAEKTVKNYVSRLLAKLGMERRTQ 77 (95)
T ss_dssp CHHHHHHH-HHHHTTCCHHHHHHHHT-CCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred CHHHHHHH-HHHHCCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999999-99991798799848856-688899999999999838999999
No 41
>>2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3} (A:1-58)
Probab=84.74 E-value=2.3 Score=23.59 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHC-CCCHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 7778999999999981-865889999967854346666777514
Q gi|254780431|r 2 VWTVERIDKLKKFWSE-GLSASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 2 sWTderve~LkkLW~e-G~SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
..++--...|..|=.+ -.|.++||++|| +|+.+|--.+.||-
T Consensus 6 ~ld~~D~~Il~~L~~~~r~s~~ela~~lg-is~~tv~~ri~~L~ 48 (58)
T 2dbb_A 6 KLDRVDMQLVKILSENSRLTYRELADILN-TTRQRIARRIDKLK 48 (58)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf 76099999999998859999999999989-69999999999984
No 42
>>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482} (A:199-258)
Probab=84.65 E-value=1.4 Score=25.02 Aligned_cols=39 Identities=26% Similarity=0.357 Sum_probs=27.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH----HHCCCCC
Q ss_conf 999999981865889999967854346666777----5145544
Q gi|254780431|r 9 DKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLH----RLFLSNR 48 (178)
Q Consensus 9 e~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~h----RLgLs~R 48 (178)
...-.|..+|+|..|||++|| +|-+.|=--+. +||..+|
T Consensus 5 ~~vl~~~~~G~t~~eIA~~l~-is~~TV~~~~~~i~~Klgv~~r 47 (60)
T 3clo_A 5 KEILRCIRKGLSSKEIAATLY-ISVNTVNRHRQNILEKLSVGNS 47 (60)
T ss_dssp HHHHHHHHTTCCHHHHHHHHT-CCHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHCCCCH
T ss_conf 999999985999999999959-9999999999999998789999
No 43
>>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} (A:1-76)
Probab=84.45 E-value=1.9 Score=24.22 Aligned_cols=38 Identities=34% Similarity=0.454 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 789999999999818658899999678543466667775
Q gi|254780431|r 4 TVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHR 42 (178)
Q Consensus 4 Tderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hR 42 (178)
++..-+.|.--.-+|+|..|||+.|| +|.++|--..+|
T Consensus 27 ~~~~r~il~l~~~~g~s~~EIA~~l~-is~~~v~~~~~r 64 (76)
T 1xsv_A 27 TNKQRNYLELFYLEDYSLSEIADTFN-VSRQAVYDNIRR 64 (76)
T ss_dssp CHHHHHHHHHHHTSCCCHHHHHHHTT-CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHH
T ss_conf 89999999999982865999999989-699999999999
No 44
>>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} (A:1-57)
Probab=84.12 E-value=3 Score=22.90 Aligned_cols=43 Identities=9% Similarity=0.130 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHC-CCCHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 97778999999999981-865889999967854346666777514
Q gi|254780431|r 1 MVWTVERIDKLKKFWSE-GLSASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 1 MsWTderve~LkkLW~e-G~SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
|.-++--...|+.|=.+ -+|.++||+++| +|+..|--++.+|-
T Consensus 3 ~~ld~~D~~IL~~L~~d~r~s~~elA~~lg-vS~~tv~~ri~~L~ 46 (57)
T 2cyy_A 3 VPLDEIDKKIIKILQNDGKAPLREISKITG-LAESTIHERIRKLR 46 (57)
T ss_dssp CCCCHHHHHHHHHHHHCTTCCHHHHHHHHC-SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf 877099999999999748999999999989-29899999999997
No 45
>>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} (A:1-122)
Probab=84.09 E-value=2.5 Score=23.39 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHC-CCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 78999999999981-86588999996785434666677751---455445
Q gi|254780431|r 4 TVERIDKLKKFWSE-GLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 4 Tderve~LkkLW~e-G~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
|......|.-||.. |++.++||+.|| +++.+|-.-+.+| ||-.|.
T Consensus 33 t~~~~~iL~~l~~~~~~t~~~la~~l~-i~~~~vs~~i~~L~~~g~i~r~ 81 (122)
T 1jgs_A 33 TAAQFKVLCSIRCAACITPVELKKVLS-VDLGALTRMLDRLVCKGWVERL 81 (122)
T ss_dssp CHHHHHHHHHHHHHSSBCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEE
T ss_conf 999999999998779989999999989-7886899999999868987984
No 46
>>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV} (A:43-106)
Probab=83.95 E-value=2.2 Score=23.81 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=33.8
Q ss_pred HHHHHHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 89999999999-8186588999996785434666677751---455445
Q gi|254780431|r 5 VERIDKLKKFW-SEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 5 derve~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
-.....|.-|| .+|+|.+|||+.+| +++.+|-.-+.+| ||-.|.
T Consensus 3 ~~q~~vL~~l~~~~~~t~~ela~~~~-~~~~t~s~~i~~L~~~glI~r~ 50 (64)
T 2nyx_A 3 IPQFRTLVILSNHGPINLATLATLLG-VQPSATGRXVDRLVGAELIDRL 50 (64)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHHT-SCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHHEEEE
T ss_conf 99999999998579979999999988-8787779999735018643565
No 47
>>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} (A:1-76)
Probab=83.36 E-value=2.2 Score=23.78 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999999998186588999996785434666677
Q gi|254780431|r 6 ERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKL 40 (178)
Q Consensus 6 erve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~ 40 (178)
|+....+.|=.+|+|..+||+.|| +|++-|-+..
T Consensus 40 e~a~~~~~l~~~g~s~~~iA~~lg-~s~~~V~~~l 73 (76)
T 1r71_A 40 EIADFIGRELAKGKKKGDIAKEIG-KSPAFITQHV 73 (76)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHT-CCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHH
T ss_conf 999999999983898999999988-8999999999
No 48
>>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} (A:35-109)
Probab=83.32 E-value=2.2 Score=23.74 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHH-CCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 7899999999998-186588999996785434666677751---455445
Q gi|254780431|r 4 TVERIDKLKKFWS-EGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 4 Tderve~LkkLW~-eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
|......|.-||. .|++.++|++.|| +++.+|-.-+.+| ||-.|.
T Consensus 1 T~~q~~iL~~l~~~~~~t~~~l~~~~~-~~~~~vs~~i~~L~~~g~i~r~ 49 (75)
T 2fbi_A 1 TEQQWRVIRILRQQGEMESYQLANQAC-ILRPSMTGVLARLERDGIVRRW 49 (75)
T ss_dssp CHHHHHHHHHHHHHCSEEHHHHHHHTT-CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEE
T ss_conf 999999999999869989999999988-6788899999999978987985
No 49
>>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} (A:)
Probab=83.18 E-value=1.6 Score=24.62 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=25.0
Q ss_pred HHHHHHHH--HCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999999--818658899999678543466667775
Q gi|254780431|r 8 IDKLKKFW--SEGLSASQIAVQLGGVTRNAVIGKLHR 42 (178)
Q Consensus 8 ve~LkkLW--~eG~SasqIA~~lGgvtRNAVIGK~hR 42 (178)
|=.|+-+| .+++|-.|||..|| +|++.|=--.||
T Consensus 18 vi~lrygl~~~~~~t~~EIa~~lg-iS~~~Vr~~~~r 53 (73)
T 1ku3_A 18 VLKMRKGLIDGREHTLEEVGAYFG-VTRERIRQIENK 53 (73)
T ss_dssp HHHHHHTTTTSSCCCHHHHHHHHT-CCHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHC-CCHHHHHHHHHH
T ss_conf 999981889999878999999989-799999999999
No 50
>>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} (A:1-85)
Probab=82.82 E-value=1.8 Score=24.32 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=33.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCC
Q ss_conf 9999999998186588999996785434666677751---45544
Q gi|254780431|r 7 RIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNR 48 (178)
Q Consensus 7 rve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R 48 (178)
|...|.-|+...+|.+|||+.+| +|+++|---+..| ||--.
T Consensus 22 r~~Il~lL~~g~~t~~eLa~~~g-ls~~tv~~~l~~L~~~glI~~ 65 (85)
T 2hoe_A 22 ISRILKRIXKSPVSRVELAEELG-LTKTTVGEIAKIFLEKGIVVE 65 (85)
T ss_dssp CCCSHHHHHHSCBCHHHHHHHHT-CCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEE
T ss_conf 99999999819929999998879-599999999999998898898
No 51
>>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} (A:144-208)
Probab=82.43 E-value=2.5 Score=23.45 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=27.8
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH----HCCCCC
Q ss_conf 999999818658899999678543466667775----145544
Q gi|254780431|r 10 KLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHR----LFLSNR 48 (178)
Q Consensus 10 ~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hR----LgLs~R 48 (178)
..-.|..+|+|..|||+.|| +|-+.|---..+ ||..+|
T Consensus 6 ~vl~l~~~G~t~~eIA~~l~-iS~~TV~~~~~~i~~Kl~v~~r 47 (65)
T 1yio_A 6 QVLQLTIRGLMNKQIAGELG-IAEVTVKVHRHNIMQKLNVRSL 47 (65)
T ss_dssp HHHHHHTTTCCHHHHHHHHT-CCHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHCCCCHHHHHHHCC-CCHHHHHHHHHHHHHHCCCCCH
T ss_conf 99999981662999999818-8689999999999998099999
No 52
>>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp} (A:)
Probab=82.39 E-value=1.3 Score=25.16 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=35.4
Q ss_pred HHHHHHHHH-CCCCHHHHHHHHC---CCCHHHHHHHHHHH---CCCCCCCC
Q ss_conf 999999998-1865889999967---85434666677751---45544555
Q gi|254780431|r 8 IDKLKKFWS-EGLSASQIAVQLG---GVTRNAVIGKLHRL---FLSNRVKV 51 (178)
Q Consensus 8 ve~LkkLW~-eG~SasqIA~~lG---gvtRNAVIGK~hRL---gLs~R~~~ 51 (178)
-+.|.-||. ++.+++||++.|. |+++|.|..-+.|| |+-.|.+.
T Consensus 38 ~~vm~~lW~~~~~t~~ei~~~l~~~~~~~~sTv~t~L~rL~~KG~v~r~~~ 88 (99)
T 2k4b_A 38 LIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKE 88 (99)
T ss_dssp SHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEE
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 999999990799589999998512448773349999999998898799952
No 53
>>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} (A:1-67)
Probab=82.35 E-value=2.1 Score=23.83 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 899999999998-1865889999967854346666777
Q gi|254780431|r 5 VERIDKLKKFWS-EGLSASQIAVQLGGVTRNAVIGKLH 41 (178)
Q Consensus 5 derve~LkkLW~-eG~SasqIA~~lGgvtRNAVIGK~h 41 (178)
+|+++.|+.+=. +.+|.++||+++| |.++.|=.-..
T Consensus 11 ~eK~~ii~~~e~g~~~s~~~iAr~~g-i~~STis~IlK 47 (67)
T 1hlv_A 11 REKSRIIQEVEENPDLRKGEIARRFN-IPPSTLSTILK 47 (67)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHT-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHCC-CCHHHHHHHHH
T ss_conf 87748999987397511006777508-98488999996
No 54
>>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} (A:1-77)
Probab=82.03 E-value=3.8 Score=22.24 Aligned_cols=41 Identities=12% Similarity=0.200 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHCC-CCHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 7789999999999818-65889999967854346666777514
Q gi|254780431|r 3 WTVERIDKLKKFWSEG-LSASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 3 WTderve~LkkLW~eG-~SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
-+|-....|..|=.+| +|.++||++|| +|+.+|--.+.||-
T Consensus 25 ld~~D~~Il~~Lq~d~r~s~~ela~~lg-is~~tv~~ri~rL~ 66 (77)
T 2e1c_A 25 LDEIDKKIIKILQNDGKAPLREISKITG-LAESTIHERIRKLR 66 (77)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHT-SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf 4799999999999838989999999988-19899999999985
No 55
>>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12} (A:10-99)
Probab=81.98 E-value=1.4 Score=25.07 Aligned_cols=44 Identities=20% Similarity=0.139 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHCCCCHHHHHHHHH---HHCCCCCC
Q ss_conf 8999999999981-865889999967854346666777---51455445
Q gi|254780431|r 5 VERIDKLKKFWSE-GLSASQIAVQLGGVTRNAVIGKLH---RLFLSNRV 49 (178)
Q Consensus 5 derve~LkkLW~e-G~SasqIA~~lGgvtRNAVIGK~h---RLgLs~R~ 49 (178)
.-|...|+.|... |++.++||+.|| +|+.+|---.. ..||-...
T Consensus 15 ~~R~~Il~~L~~~~~~~~~ela~~l~-is~~tvs~HL~~L~~~Glv~~~ 62 (90)
T 3cuo_A 15 PKRLLILCMLSGSPGTSAGELTRITG-LSASATSQHLARMRDEGLIDSQ 62 (90)
T ss_dssp HHHHHHHHHHTTCCSEEHHHHHHHHC-CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEE
T ss_conf 99999999997699941999999989-2987899999999988951799
No 56
>>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} (A:35-99)
Probab=81.90 E-value=3.2 Score=22.69 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 789999999999-8186588999996785434666677751---455445
Q gi|254780431|r 4 TVERIDKLKKFW-SEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 4 Tderve~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
|......|.-|+ .+|+|.++||+.+| +++.+|=.-+.+| ||--|.
T Consensus 3 t~~~~~vL~~l~~~~~~t~~ela~~~~-~~~~~vsr~i~~L~~~g~I~r~ 51 (65)
T 2nnn_A 3 TPTQWAALVRLGETGPCPQNQLGRLTA-XDAATIKGVVERLDKRGLIQRS 51 (65)
T ss_dssp CHHHHHHHHHHHHHSSBCHHHHHHHTT-CCHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHC-CCCCCHHHHHHHHHHCCCEEEE
T ss_conf 999999999999879939999999878-7853142899999867880464
No 57
>>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} (A:46-98)
Probab=81.81 E-value=3.5 Score=22.46 Aligned_cols=41 Identities=17% Similarity=0.107 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 899999999998186588999996785434666677751455
Q gi|254780431|r 5 VERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRLFLS 46 (178)
Q Consensus 5 derve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRLgLs 46 (178)
-|+--.+..|=..+-.-++-|+.|| ++|+.+--|+.++||.
T Consensus 13 ~E~~~I~~aL~~~~gn~s~aA~~Lg-isr~tL~rklkk~~i~ 53 (53)
T 1eto_A 13 VEQPLLDMVMQYTLGNQTRAALMMG-INRGTLRKKLKKYGMN 53 (53)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHT-SCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHC-CCHHHHHHHHHHHCCC
T ss_conf 9999999999992998999999979-8999999999985859
No 58
>>2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:1-130)
Probab=81.38 E-value=3.1 Score=22.77 Aligned_cols=45 Identities=20% Similarity=0.096 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHCC-CCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 789999999999818-6588999996785434666677751---455445
Q gi|254780431|r 4 TVERIDKLKKFWSEG-LSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 4 Tderve~LkkLW~eG-~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
|......|.-||..| +|.++||+.+| +|+.+|=.-+.+| ||--|.
T Consensus 43 t~~~~~iL~~l~~~~~~t~~eLa~~~~-i~~~~vs~~i~~L~~~glv~r~ 91 (130)
T 2eth_A 43 KTTELYAFLYVALFGPKKXKEIAEFLS-TTKSNVTNVVDSLEKRGLVVRE 91 (130)
T ss_dssp BHHHHHHHHHHHHHCCBCHHHHHHHTT-SCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEE
T ss_conf 999999999999859959999999989-6998999999999878884565
No 59
>>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV} (A:)
Probab=81.34 E-value=3.2 Score=22.73 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999999998186588999996785434666677751
Q gi|254780431|r 6 ERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 6 erve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
+.-+.+.-..-+|+|..|||+.|| +|-|+|=-.+||-
T Consensus 19 ~~r~i~~l~~~~~~s~~eIA~~l~-is~~tV~~~l~ra 55 (70)
T 2o8x_A 19 DQREALLLTQLLGLSYADAAAVCG-CPVGTIRSRVARA 55 (70)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHT-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf 999998999995847999999979-8999999999999
No 60
>>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1} (A:1-124)
Probab=80.99 E-value=3.1 Score=22.75 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHH--CCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 7899999999998--186588999996785434666677751---455445
Q gi|254780431|r 4 TVERIDKLKKFWS--EGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 4 Tderve~LkkLW~--eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
|-.....|--||. +|+|.++||+.+| +++.+|-.-+.+| ||-.|.
T Consensus 38 t~~q~~iL~~l~~~~~~~t~~ela~~~~-~~~~~vs~~i~~L~~~glI~r~ 87 (124)
T 3fm5_A 38 RVRSYSVLVLACEQAEGVNQRGVAATXG-LDPSQIVGLVDELEERGLVVRT 87 (124)
T ss_dssp CHHHHHHHHHHHHSTTCCCSHHHHHHHT-CCHHHHHHHHHHHHTTTSEEC-
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEC
T ss_conf 9999999999998598989999999978-8777788999999986985651
No 61
>>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* (A:1-114)
Probab=80.93 E-value=3.9 Score=22.12 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHCC-CCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 789999999999818-6588999996785434666677751---455445
Q gi|254780431|r 4 TVERIDKLKKFWSEG-LSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 4 Tderve~LkkLW~eG-~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
|......|..||..| +|.++||..+| +++.+|-.-+.+| ||-.|.
T Consensus 28 t~~q~~iL~~l~~~~~~t~~~la~~~~-~~~~~vs~~i~~L~~~gli~r~ 76 (114)
T 3bpv_A 28 TDAQVACLLRIHREPGIKQDELATFFH-VDKGTIARTLRRLEESGFIERE 76 (114)
T ss_dssp CHHHHHHHHHHHHSTTCBHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEE
T ss_conf 999999999998589989999999989-6988999999999968986861
No 62
>>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged helix, DNA binding; 2.60A {Pyrococcus furiosus} (A:1-77)
Probab=80.86 E-value=3.3 Score=22.60 Aligned_cols=44 Identities=25% Similarity=0.204 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCC
Q ss_conf 7899999999998186588999996785434666677751---45544
Q gi|254780431|r 4 TVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNR 48 (178)
Q Consensus 4 Tderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R 48 (178)
.+-|...|+.|=.++++.+|||+.+| +|+..|.--...| ||-..
T Consensus 14 ~p~R~~Il~~L~~~~~~~~ela~~l~-is~stvs~HL~~L~~aglV~~ 60 (77)
T 2p4w_A 14 NETRRRILFLLTKRPYFVSELSRELG-VGQKAVLEHLRILEEAGLIES 60 (77)
T ss_dssp SHHHHHHHHHHHHSCEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEE
T ss_conf 99999999999819988999999989-099999999999998897388
No 63
>>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=80.65 E-value=4.8 Score=21.51 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 77789999999999-8186588999996785434666677751
Q gi|254780431|r 2 VWTVERIDKLKKFW-SEGLSASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 2 sWTderve~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
.||.|--++|..+. .-|..=++||+.|+|=|-|.|.-.-|.+
T Consensus 11 ~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~~Rt~~q~k~r~~~~ 53 (72)
T 2cu7_A 11 KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQY 53 (72)
T ss_dssp CCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9899999999999999738999999870999899999999999
No 64
>>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} (A:1-139)
Probab=80.34 E-value=2.8 Score=23.08 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHH--CCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCCC
Q ss_conf 7899999999998--186588999996785434666677751---4554455
Q gi|254780431|r 4 TVERIDKLKKFWS--EGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRVK 50 (178)
Q Consensus 4 Tderve~LkkLW~--eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~~ 50 (178)
|-.....|.-||. +|++.++||+.+| +++.+|-.-+.+| ||-.|..
T Consensus 52 ~~~~~~iL~~l~~~~~~~t~~~La~~~~-i~~~~vs~~i~~L~~~gli~r~~ 102 (139)
T 3deu_A 52 TQTHWVTLHNIHQLPPDQSQIQLAKAIG-IEQPSLVRTLDQLEDKGLISRQT 102 (139)
T ss_dssp CHHHHHHHHHHHHSCSSEEHHHHHHHHT-SCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9999999999997698999999999989-69989999999999698879862
No 65
>>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} (A:)
Probab=80.31 E-value=3.4 Score=22.55 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=23.5
Q ss_pred HCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 8186588999996785434666677751
Q gi|254780431|r 16 SEGLSASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 16 ~eG~SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
.+|+|..|||+.|| +|++.|=--.||-
T Consensus 36 ~e~~s~~EIA~~lg-is~~~V~~~~~ra 62 (87)
T 1tty_A 36 GKPKTLEEVGQYFN-VTRERIRQIEVKA 62 (87)
T ss_dssp SSCCCHHHHHHHHT-CCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf 99566999999969-8899999999999
No 66
>>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} (A:45-125)
Probab=80.06 E-value=3.4 Score=22.52 Aligned_cols=45 Identities=16% Similarity=-0.006 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHH-CCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 7899999999998-186588999996785434666677751---455445
Q gi|254780431|r 4 TVERIDKLKKFWS-EGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 4 Tderve~LkkLW~-eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
|......|.-|+. +|+|.++||+.|| +++.+|-.-+.+| ||-.|.
T Consensus 3 t~~q~~iL~~l~~~~~~t~~~la~~l~-~~~~~vs~~i~~L~~~g~i~r~ 51 (81)
T 2fxa_A 3 NINEHHILWIAYQLNGASISEIAKFGV-XHVSTAFNFSKKLEERGYLRFS 51 (81)
T ss_dssp CHHHHHHHHHHHHHTSEEHHHHHHHTT-CCHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHC-CCCCCHHHHHHHHHHCCCEEEC
T ss_conf 999999999999769958999999984-5755377999999987996565
No 67
>>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A (A:1-60)
Probab=80.05 E-value=4.1 Score=22.01 Aligned_cols=41 Identities=12% Similarity=0.236 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHC-CCCHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 778999999999981-865889999967854346666777514
Q gi|254780431|r 3 WTVERIDKLKKFWSE-GLSASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 3 WTderve~LkkLW~e-G~SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
=++-....|+.|=.. -+|.++||+++| +|+.+|--.+++|-
T Consensus 8 lD~~D~~IL~~Lq~n~r~s~~elA~~lg-is~~tv~~ri~kL~ 49 (60)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSERVA-LSPSPCLRRLKQLE 49 (60)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHT-SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf 0899999999999836999999999989-79889999999998
No 68
>>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A* (A:155-225)
Probab=79.99 E-value=3.1 Score=22.76 Aligned_cols=33 Identities=33% Similarity=0.414 Sum_probs=25.3
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999998186588999996785434666677751
Q gi|254780431|r 10 KLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 10 ~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
..=.|..+|+|..|||.+|| +|-+.|=....++
T Consensus 12 ~vl~~~~~G~s~~eIA~~l~-is~~TV~~~~~~i 44 (71)
T 3klo_A 12 QIIKLLGSGASNIEIADKLF-VSENTVKTHLHNV 44 (71)
T ss_dssp HHHHHHTTTCCHHHHHHHTT-CCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf 99999974997999999979-8999999999999
No 69
>>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A (A:44-114)
Probab=79.77 E-value=3.2 Score=22.66 Aligned_cols=46 Identities=20% Similarity=0.199 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHHHH---HHCCCCCC
Q ss_conf 7789999999999-81865889999967854346666777---51455445
Q gi|254780431|r 3 WTVERIDKLKKFW-SEGLSASQIAVQLGGVTRNAVIGKLH---RLFLSNRV 49 (178)
Q Consensus 3 WTderve~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK~h---RLgLs~R~ 49 (178)
+|-.....|.-|| .+|.|.++||+.+| +++.+|=--+. ..||-.|.
T Consensus 2 lt~~~~~iL~~i~~~~~~t~~~la~~~~-i~~~~~s~~i~~L~~~g~i~r~ 51 (71)
T 2pex_A 2 LTYPQYLVMLVLWETDERSVSEIGERLY-LDSATLTPLLKRLQAAGLVTRT 51 (71)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEE
T ss_conf 8999999999998479989999999979-6887899999999988998981
No 70
>>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} (A:1-88)
Probab=79.69 E-value=4 Score=22.04 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHC-C-CCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCCC
Q ss_conf 778999999999981-8-6588999996785434666677751---4554455
Q gi|254780431|r 3 WTVERIDKLKKFWSE-G-LSASQIAVQLGGVTRNAVIGKLHRL---FLSNRVK 50 (178)
Q Consensus 3 WTderve~LkkLW~e-G-~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~~ 50 (178)
.|......|..|+.. | +|.++||+.+| +++.+|-.-+.+| ||--|..
T Consensus 24 ls~~q~~vL~~l~~~~g~~t~~~La~~~~-~~~~~vs~~i~~Le~~G~I~r~~ 75 (88)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIXEELK-ISKGNVSXSLKKLEELGFVRKVW 75 (88)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 79999999999997698969999997848-66514999999999889989852
No 71
>>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A (A:1-81)
Probab=79.67 E-value=4.5 Score=21.70 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf 9999999999818658899999678543466667775145544
Q gi|254780431|r 6 ERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRLFLSNR 48 (178)
Q Consensus 6 erve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRLgLs~R 48 (178)
|+=...++|=.+|+|..+||+.+| +||-.|-..+.=+.|+..
T Consensus 12 E~a~~y~~~l~~g~tQ~elA~~lg-~S~s~Vs~~l~la~LP~~ 53 (81)
T 1zx4_A 12 EIGLRLXRXKNDGXSQKDIAAKEG-LSQAKVTRALQAASAPEE 53 (81)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHT-CCHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHHCCCHH
T ss_conf 999999999987999999999989-799999999999849999
No 72
>>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} (A:)
Probab=79.50 E-value=2.3 Score=23.58 Aligned_cols=39 Identities=18% Similarity=0.077 Sum_probs=30.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 9999999998186588999996785434666677751455
Q gi|254780431|r 7 RIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRLFLS 46 (178)
Q Consensus 7 rve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRLgLs 46 (178)
+-....-|=..+-+-++.|+.|| ++|+.+--|..++||.
T Consensus 53 ~~~i~~~L~~~~gn~~~aA~~LG-isR~TL~rklkk~gi~ 91 (91)
T 1ntc_A 53 RTLLTTALRHTQGHKQEAARLLG-WGAATLTAKLKELGME 91 (91)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHTT-CCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHC-CCHHHHHHHHHHHCCC
T ss_conf 99999999994994999999979-8999999999987849
No 73
>>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP} (A:173-236)
Probab=79.29 E-value=4.2 Score=21.90 Aligned_cols=38 Identities=24% Similarity=0.196 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 7899999999998186588999996785434666677751
Q gi|254780431|r 4 TVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 4 Tderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
|+--.+.| .|-.+|++..|||..|| +|-+.|-.-..++
T Consensus 5 T~~E~~vl-~l~~~G~~~~eIA~~l~-iS~~tV~~~~~~i 42 (64)
T 2q0o_A 5 SPREMLCL-VWASKGKTASVTANLTG-INARTVQHYLDKA 42 (64)
T ss_dssp CHHHHHHH-HHHHTTCCHHHHHHHHC-CCHHHHHHHHHHH
T ss_pred CHHHHHHH-HHHHCCCCHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf 99999999-99875999999999959-9999999999999
No 74
>>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} (A:1-105,A:403-429)
Probab=79.25 E-value=3.7 Score=22.30 Aligned_cols=42 Identities=10% Similarity=0.027 Sum_probs=32.6
Q ss_pred HHHHHHHHHHC-CCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 99999999981-86588999996785434666677751---455445
Q gi|254780431|r 7 RIDKLKKFWSE-GLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 7 rve~LkkLW~e-G~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
+...|.-|+.. ++|.+|||+.+| +|+.+|=--+-+| ||-.+.
T Consensus 41 ~~~IL~lL~~~g~~T~~eLA~~lg-LS~~TVs~~L~~L~~~GlI~~~ 86 (132)
T 1z05_A 41 AGRVYKLIDQKGPISRIDLSKESE-LAPASITKITRELIDAHLIHET 86 (132)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEE
T ss_conf 999999999859918999998879-6999999999999988968981
No 75
>>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus} (A:)
Probab=79.05 E-value=1.9 Score=24.20 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=27.6
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH----HCCCCC
Q ss_conf 999999818658899999678543466667775----145544
Q gi|254780431|r 10 KLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHR----LFLSNR 48 (178)
Q Consensus 10 ~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hR----LgLs~R 48 (178)
..=.|+.+|+|..|||.+|| +|-+.|=-...+ ||..+|
T Consensus 36 ~vl~~l~~G~t~~eIA~~L~-is~~TV~~~~~~i~~Klgv~~r 77 (91)
T 2rnj_A 36 EILLLIAKGYSNQEIASASH-ITIKTVKTHVSNILSKLEVQDR 77 (91)
T ss_dssp HHHHHHHTTCCTTHHHHHHT-CCHHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCCH
T ss_conf 99999993899999998979-7998999999999998399999
No 76
>>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A (A:1-56)
Probab=78.88 E-value=5.3 Score=21.27 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHC-CCCHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 999999999981-865889999967854346666777514
Q gi|254780431|r 6 ERIDKLKKFWSE-GLSASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 6 erve~LkkLW~e-G~SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
--...|.-|=.+ .+|.++||+++| +|+.+|-..+.+|-
T Consensus 8 ~D~~Il~~Lq~~~r~~~~elA~~lg-~S~~tv~~Ri~~L~ 46 (56)
T 2w25_A 8 IDRILVRELAADGRATLSELATRAG-LSVSAVQSRVRRLE 46 (56)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHT-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf 9999999999848999999999989-09999999999984
No 77
>>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii OT3} (A:10-83)
Probab=78.61 E-value=2.5 Score=23.44 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCC
Q ss_conf 7899999999998186588999996785434666677751---455
Q gi|254780431|r 4 TVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL---FLS 46 (178)
Q Consensus 4 Tderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs 46 (178)
...|...|+-|=.+.++.++|+.+|| +|+.+|-=-...| ||-
T Consensus 10 ~p~Rl~IL~~L~~~~~~~~eia~~l~-is~~tvS~HL~~L~~aglI 54 (74)
T 1uly_A 10 EDTRRKILKLLRNKEXTISQLSEILG-KTPQTIYHHIEKLKEAGLV 54 (74)
T ss_dssp SHHHHHHHHHHTTCCBCHHHHHHHHT-CCHHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCE
T ss_conf 99999999999829968999999989-0999999999999888984
No 78
>>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.63A {Escherichia coli CFT073} (A:1-46)
Probab=78.57 E-value=2.4 Score=23.57 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=23.4
Q ss_pred HHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9999999-81865889999967854346666777
Q gi|254780431|r 9 DKLKKFW-SEGLSASQIAVQLGGVTRNAVIGKLH 41 (178)
Q Consensus 9 e~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK~h 41 (178)
|.|++.- .-|+|.+++|+.|| |||+++=.-++
T Consensus 11 e~L~E~Le~~gis~~~lA~~lg-vs~~~is~ii~ 43 (46)
T 2ict_A 11 DIIQESLDELNVSLREFARAXE-IAPSTASRLLT 43 (46)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHT-CCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHC
T ss_conf 9999999997999999999997-77899999980
No 79
>>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} (A:1-54)
Probab=78.26 E-value=1.9 Score=24.18 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=29.6
Q ss_pred HHHHHHHHHHC-CCCHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 99999999981-865889999967854346666777514
Q gi|254780431|r 7 RIDKLKKFWSE-GLSASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 7 rve~LkkLW~e-G~SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
....|..|=.. -+|.++||+++| ||+.+|-..+.+|-
T Consensus 6 D~~Il~~L~~n~r~s~~~la~~lg-iS~~tv~~ri~kLe 43 (54)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKLG-ISETAVRKRVKALE 43 (54)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHT-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf 999999999858989999999989-09999999999986
No 80
>>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} (A:)
Probab=78.13 E-value=4 Score=22.06 Aligned_cols=44 Identities=18% Similarity=0.092 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 8999999999981-86588999996785434666677751---455445
Q gi|254780431|r 5 VERIDKLKKFWSE-GLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 5 derve~LkkLW~e-G~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
.-+...|..|+.. |+|.++|++.+| +|+.+|---+.+| ||-.|.
T Consensus 16 ~~~~~il~~l~~~~~~t~~eLa~~~~-i~~~~~s~~l~~L~~~GlV~~~ 63 (100)
T 1ub9_A 16 PVRLGIMIFLLPRRKAPFSQIQKVLD-LTPGNLDSHIRVLERNGLVKTY 63 (100)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHHTT-CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHH-HCCCCCHHHHHHHCCCCEEEEE
T ss_conf 99999999972678961999999885-2687441999986421248888
No 81
>>2jvl_A TRMBF1; coactivator, helix-turn-helix, protein binding, transcription; NMR {Trichoderma reesei} (A:)
Probab=77.94 E-value=1.3 Score=25.34 Aligned_cols=30 Identities=13% Similarity=0.344 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHH
Q ss_conf 9999999999818658899999678543466
Q gi|254780431|r 6 ERIDKLKKFWSEGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 6 erve~LkkLW~eG~SasqIA~~lGgvtRNAV 36 (178)
+++..|+++-..|+|..|+|+.|| ||+..|
T Consensus 37 ~~l~~~R~r~~~gltq~~lA~~~G-vs~~~i 66 (107)
T 2jvl_A 37 KAIEQGRQKFEPTMTQAELGKEIG-ETAATV 66 (107)
T ss_dssp HHHHHHHTTSSSCCCHHHHHHHHT-CCHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHC-CCHHHH
T ss_conf 999999999886999999987647-399999
No 82
>>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} (A:)
Probab=77.76 E-value=4.3 Score=21.87 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHCC---CCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 77789999999999818---6588999996785434666677751---455445
Q gi|254780431|r 2 VWTVERIDKLKKFWSEG---LSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 2 sWTderve~LkkLW~eG---~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
..|......|.-|+..+ +|.++||+.+| +|+.+|-.-+.+| ||-.|.
T Consensus 34 gl~~~~~~iL~~l~~~~~~~~t~~ela~~l~-i~~~~vs~~v~~L~~~g~v~r~ 86 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLN-YKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSS-SHHHHHHHHHHHHHHTTSSCCB
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCHHEEE
T ss_conf 9899999999999846899918999999979-8986899999999702031344
No 83
>>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} (A:1-127)
Probab=77.62 E-value=5.7 Score=21.03 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 789999999999-8186588999996785434666677751---455445
Q gi|254780431|r 4 TVERIDKLKKFW-SEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 4 Tderve~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
|-.....|--|+ .+|+|.++||+.+| +|+.+|=.-+.+| ||-.|.
T Consensus 41 t~~~~~iL~~i~~~~~~t~~~la~~~~-i~~~~vs~~i~~L~~~glV~r~ 89 (127)
T 2rdp_A 41 TPPQFVALQWLLEEGDLTVGELSNKXY-LACSTTTDLVDRXERNGLVARV 89 (127)
T ss_dssp CHHHHHHHHHHHHHCSBCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999779949999999878-4524488999989978865100
No 84
>>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} (A:34-111)
Probab=77.45 E-value=3 Score=22.87 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 789999999999-8186588999996785434666677751---455445
Q gi|254780431|r 4 TVERIDKLKKFW-SEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 4 Tderve~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
|-.....|--|+ .+|+|.++||..+| +++.+|-.-+.+| ||-.|.
T Consensus 6 t~~~~~iL~~l~~~~~~t~~~la~~~~-~~~~~~s~~i~~L~~~G~I~r~ 54 (78)
T 1z91_A 6 TYPQYLALLLLWEHETLTVKKMGEQLY-LDSGTLTPMLKRMEQQGLITRK 54 (78)
T ss_dssp CHHHHHHHHHHHHHSEEEHHHHHHTTT-CCHHHHHHHHHHHHHHTSEECC
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEE
T ss_conf 999999999988589999999999979-6876688999999978997861
No 85
>>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12} (F:504-613)
Probab=77.10 E-value=0.8 Score=26.64 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=27.5
Q ss_pred HHHHHHHHH---HCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999999999---8186588999996785434666677751
Q gi|254780431|r 7 RIDKLKKFW---SEGLSASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 7 rve~LkkLW---~eG~SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
|--.+-.+| .+|+|..+||..|| +|+++|=-..+|-
T Consensus 53 r~ii~l~~~~~~~e~~t~~eIA~~lg-is~~~V~~~~~ra 91 (110)
T 3iyd_F 53 AKVLRMRFGIDMNTDHTLEEVGKQFD-VTRERIRQIEAKA 91 (110)
T ss_dssp HHHHHHHHTSSSCCCCSTTGGGTTTS-SCSSHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf 99999981899999824999999979-5999999999999
No 86
>>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} (A:)
Probab=76.79 E-value=4.3 Score=21.88 Aligned_cols=40 Identities=20% Similarity=0.134 Sum_probs=29.4
Q ss_pred HHHHHHHHC--CCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 999999981--86588999996785434666677751---455445
Q gi|254780431|r 9 DKLKKFWSE--GLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 9 e~LkkLW~e--G~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
+.+..|+.+ ..|.++||+.|| ||+-+|-.-+++| ||-.+.
T Consensus 11 ~~I~~l~~~~~~v~~~diA~~l~-Vs~~sV~~~i~~L~~~GlV~~~ 55 (142)
T 1on2_A 11 EQIYMLIEEKGYARVSDIAEALA-VHPSSVTKMVQKLDKDEYLIYE 55 (142)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHT-SCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999996389976999999969-8878999999999977996506
No 87
>>2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} (A:1-66)
Probab=76.77 E-value=6.3 Score=20.77 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=30.5
Q ss_pred HHHHHHHHHHC-CCCHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 99999999981-865889999967854346666777514
Q gi|254780431|r 7 RIDKLKKFWSE-GLSASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 7 rve~LkkLW~e-G~SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
....|.-|=.+ .+|..+||++|| +|+.+|-..+.||-
T Consensus 19 D~~IL~~L~~~~r~s~~ela~~lg-ls~~tv~~ri~~L~ 56 (66)
T 2ia0_A 19 DRNILRLLKKDARLTISELSEQLK-KPESTIHFRIKKLQ 56 (66)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHT-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf 999999999848999999999989-09999999999998
No 88
>>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} (A:)
Probab=76.60 E-value=2 Score=23.97 Aligned_cols=44 Identities=14% Similarity=0.094 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 899999999998186588999996785434666677751---455445
Q gi|254780431|r 5 VERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 5 derve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
+-|+.+|..|=....+.++||+.|| +|+++|---..+| ||-.+.
T Consensus 18 ~~R~~IL~~L~~~~~~~~eLa~~l~-is~~tvs~hL~~L~~~Glv~~~ 64 (118)
T 3f6o_A 18 PTRRAVLGRLSRGPATVSELAKPFD-MALPSFMKHIHFLEDSGWIRTH 64 (118)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHTTCC-SCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCCEEE
T ss_conf 9999999999809977777798869-6999999999889988986267
No 89
>>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} (A:33-108)
Probab=76.47 E-value=3 Score=22.84 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 789999999999-8186588999996785434666677751---455445
Q gi|254780431|r 4 TVERIDKLKKFW-SEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 4 Tderve~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
|-.....|.-|+ .+|+|.++||+.++ +++.+|=.-+.+| ||-.|.
T Consensus 4 t~~~~~iL~~l~~~~~~t~~~la~~~~-~~~~~~s~~i~~L~~~G~i~r~ 52 (76)
T 2bv6_A 4 TYPQFLVLTILWDESPVNVKKVVTELA-LDTGTVSPLLKRXEQVDLIKRE 52 (76)
T ss_dssp CHHHHHHHHHHHHSSEEEHHHHHHHTT-CCTTTHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEE
T ss_conf 999999999998079949999999979-8873799999999858988980
No 90
>>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pseudomonas aeruginosa} (A:30-123)
Probab=75.96 E-value=5.1 Score=21.39 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHC-C-CCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 78999999999981-8-6588999996785434666677751---455445
Q gi|254780431|r 4 TVERIDKLKKFWSE-G-LSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 4 Tderve~LkkLW~e-G-~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
|......|.-||.. | ++.++||+++| +++.+|-.-+.+| ||--|.
T Consensus 5 t~~~~~vL~~l~~~~~~~t~~~La~~~~-~~~~~vs~~i~~L~~~GlI~r~ 54 (94)
T 2hr3_A 5 QFSQLVVLGAIDRLGGDVTPSELAAAER-XRSSNLAALLRELERGGLIVRH 54 (94)
T ss_dssp HHHHHHHHHHHHHTTSCBCHHHHHHHTT-CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEE
T ss_conf 9999999999997699989999999979-7988999999999866976864
No 91
>>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} (A:1-119)
Probab=75.83 E-value=5.7 Score=21.05 Aligned_cols=45 Identities=31% Similarity=0.316 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHH---CCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 7899999999998---186588999996785434666677751---455445
Q gi|254780431|r 4 TVERIDKLKKFWS---EGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 4 Tderve~LkkLW~---eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
|......|.-|+. .|+|.++||+.+| +++.+|-.-+.+| ||--|.
T Consensus 30 ~~~~~~vL~~l~~~~~~~~t~~ela~~~~-~~~~~vs~~v~~L~~~gli~r~ 80 (119)
T 3eco_A 30 TNEQGHTLGYLYAHQQDGLTQNDIAKALQ-RTGPTVSNLLRNLERKKLIYRY 80 (119)
T ss_dssp CHHHHHHHHHHHHSTTTCEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHCCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEC
T ss_conf 99999999999955999979999999989-6888999999999988896516
No 92
>>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} (A:1-138)
Probab=75.71 E-value=4.5 Score=21.70 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHH-CCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 7899999999998-186588999996785434666677751---455445
Q gi|254780431|r 4 TVERIDKLKKFWS-EGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 4 Tderve~LkkLW~-eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
|......|--||. .|+|.++||+.+| +++.+|---+.+| ||-.|.
T Consensus 52 t~~q~~iL~~l~~~~~~t~~ela~~~~-~~~~~~s~~v~~L~~~glv~r~ 100 (138)
T 3e6m_A 52 PTPKLRLLSSLSAYGELTVGQLATLGV-XEQSTTSRTVDQLVDEGLAARS 100 (138)
T ss_dssp CHHHHHHHHHHHHHSEEEHHHHHHHTT-CCHHHHHHHHHHHHHTTSEEEC
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHCCCCEEEE
T ss_conf 999999999998569969999999977-4798882999987418887750
No 93
>>3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit GP1, GP1 octameric assembly, GP1 channel, DNA recognition, DNA packaging; 1.65A {Enterobacteria phage SF6} (A:)
Probab=75.44 E-value=3.1 Score=22.74 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCC-CHHHHHH
Q ss_conf 77899999999998186588999996785-4346666
Q gi|254780431|r 3 WTVERIDKLKKFWSEGLSASQIAVQLGGV-TRNAVIG 38 (178)
Q Consensus 3 WTderve~LkkLW~eG~SasqIA~~lGgv-tRNAVIG 38 (178)
+|+|..+.+..+=..|+|-.|||..+| | ++.-|.-
T Consensus 16 y~~e~~~~i~~~~~~G~s~~~Ia~~~g-ips~~Tl~~ 51 (143)
T 3hef_A 16 YMPEVADDICSLLSSGESLLKVCKRPG-MPDKSTVFR 51 (143)
T ss_dssp CCHHHHHHHHHHHHTTCCHHHHHTSTT-CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHCCC-CCCHHHHHH
T ss_conf 899999999999987987999987279-996899999
No 94
>>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} (A:)
Probab=75.41 E-value=7 Score=20.46 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 77789999999999-81865889999967854346666777514
Q gi|254780431|r 2 VWTVERIDKLKKFW-SEGLSASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 2 sWTderve~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
.||+|-.++|.+|. .-|..=++||..|+|=|.+.|.-.-+++-
T Consensus 20 ~Wt~eEd~~L~~~~~~~G~~w~~Ia~~l~~Rt~~qc~~r~~~~l 63 (79)
T 2yus_A 20 EWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLP 63 (79)
T ss_dssp CCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 96999999999999982499998887659998999999999864
No 95
>>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A (A:1-82)
Probab=75.18 E-value=1.9 Score=24.20 Aligned_cols=43 Identities=16% Similarity=0.097 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH---HCCCCC
Q ss_conf 89999999999818658899999678543466667775---145544
Q gi|254780431|r 5 VERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHR---LFLSNR 48 (178)
Q Consensus 5 derve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hR---LgLs~R 48 (178)
+-|...|..|=.+.++.+|||+.+| +|+..|.--..- .||-..
T Consensus 25 ~~R~~Il~~L~~~~~~~~ela~~l~-is~~tvs~HL~~L~~~glV~~ 70 (82)
T 2kko_A 25 GRRLQILDLLAQGERAVEAIATATG-MNLTTASANLQALKSGGLVEA 70 (82)
T ss_dssp STTHHHHHHHTTCCEEHHHHHHHHT-CCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEE
T ss_conf 9999999999819978999999989-099999999999998892279
No 96
>>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} (A:1-131)
Probab=74.81 E-value=1.6 Score=24.70 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCC
Q ss_conf 7899999999998186588999996785434666677751---45544
Q gi|254780431|r 4 TVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNR 48 (178)
Q Consensus 4 Tderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R 48 (178)
.+-|.+.|+.|-..+++.++||+.+| +|+++|==-...| ||-..
T Consensus 57 ~~~R~~Il~~L~~~~~~~~eLa~~l~-is~~tvS~HL~~L~~aGlV~~ 103 (131)
T 3f6v_A 57 EPTRRRLVQLLTSGEQTVNNLAAHFP-ASRSAISQHLRVLTEAGLVTP 103 (131)
T ss_dssp SHHHHHHHHHGGGCCEEHHHHHTTSS-SCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCEEEE
T ss_conf 99999999999829917999999988-787789998754986993578
No 97
>>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA binding protein; 1.80A {Mycobacterium tuberculosis H37RV} (A:1-74)
Probab=74.34 E-value=6.1 Score=20.87 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHCC--CCHHHHHHHHC---CCCHHHHHHHHHHH---CCCCCC
Q ss_conf 7789999999999818--65889999967---85434666677751---455445
Q gi|254780431|r 3 WTVERIDKLKKFWSEG--LSASQIAVQLG---GVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 3 WTderve~LkkLW~eG--~SasqIA~~lG---gvtRNAVIGK~hRL---gLs~R~ 49 (178)
=||--.+.++-||..| +|+.||..+|. +.++|.|.--..|| |+-.+.
T Consensus 7 L~~~E~~iM~~iW~~~~~~t~~ei~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~~~ 61 (74)
T 2g9w_A 7 LGDLERAVXDHLWSRTEPQTVRQVHEALSARRDLAYTTVXAVLQRLAKKNLVLQI 61 (74)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 8899999999998489996799999985013698385799999999968950024
No 98
>>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} (A:54-141)
Probab=74.22 E-value=7.5 Score=20.27 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=37.1
Q ss_pred CHHHHHHHHHH-HHCCCCHHHHHHHHC-CCCHHHHHHHHHHHCCCCCCC
Q ss_conf 78999999999-981865889999967-854346666777514554455
Q gi|254780431|r 4 TVERIDKLKKF-WSEGLSASQIAVQLG-GVTRNAVIGKLHRLFLSNRVK 50 (178)
Q Consensus 4 Tderve~LkkL-W~eG~SasqIA~~lG-gvtRNAVIGK~hRLgLs~R~~ 50 (178)
|++-...|.++ ...=+|+.+|+.+|| .||...|---.|..|+-.+.+
T Consensus 9 t~~~~r~i~~~~~~~~~t~~~l~~~lg~~vS~~Tv~r~L~~~g~~~~~~ 57 (88)
T 1u78_A 9 SVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKRSGVIVRQK 57 (88)
T ss_dssp CHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHHHTC------
T ss_pred CHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECC
T ss_conf 7899999999997624678899998187867999999999879722245
No 99
>>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} (A:)
Probab=73.73 E-value=7.4 Score=20.30 Aligned_cols=40 Identities=15% Similarity=0.036 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 89999999999818658899999678543466667775145
Q gi|254780431|r 5 VERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRLFL 45 (178)
Q Consensus 5 derve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRLgL 45 (178)
-|+-...+.|=..|-.-++.|++|| +||+.+=-|...+||
T Consensus 41 ~E~~~I~~aL~~~~gn~~~aA~~Lg-isr~TL~rklkk~gi 80 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRLN-MHRRTLQRILAKRSP 80 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHT-SCHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHCCC
T ss_conf 9999999999999830999999969-899999999997289
No 100
>>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A (A:1-138)
Probab=73.72 E-value=2.7 Score=23.20 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=31.5
Q ss_pred HHHHHHHH-----HCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 99999999-----8186588999996785434666677751---455445
Q gi|254780431|r 8 IDKLKKFW-----SEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 8 ve~LkkLW-----~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
.+.|+-+| ..++|.++||+.|| ||+-+|-.-+.|| ||--+.
T Consensus 5 ~~yL~~I~~~~~~~~~~t~~~lA~~lg-is~~tvt~~l~~Le~~GlV~~~ 53 (138)
T 3hrs_A 5 EDYLKCLYELGTRHNKITNKEIAQLMQ-VSPPAVTEMMKKLLAEELLIKD 53 (138)
T ss_dssp HHHHHHHHHTTSSCSCCCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEC
T ss_conf 999999999983499875999999978-9928999999999988997863
No 101
>>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis} (A:)
Probab=73.52 E-value=5 Score=21.44 Aligned_cols=38 Identities=18% Similarity=0.324 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 899999999998-186588999996785434666677751455
Q gi|254780431|r 5 VERIDKLKKFWS-EGLSASQIAVQLGGVTRNAVIGKLHRLFLS 46 (178)
Q Consensus 5 derve~LkkLW~-eG~SasqIA~~lGgvtRNAVIGK~hRLgLs 46 (178)
.-|+..|+.|.. .+++.++|++.|| +|+.+| .|-|.|.
T Consensus 27 p~Rl~IL~~L~~~~~~~v~ela~~l~-~s~stv---S~HLkL~ 65 (99)
T 2zkz_A 27 PXRLKIVNELYKHKALNVTQIIQILK-LPQSTV---SQHLCKX 65 (99)
T ss_dssp HHHHHHHHHHHHHSCEEHHHHHHHHT-CCHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHH---HHHHHHH
T ss_conf 99999999997289946999999988-698899---9999999
No 102
>>2o0m_A Transcriptional regulator, SORC family; structural genomics, PSI-2, protein structure initiative; 1.60A {Enterococcus faecalis V583} (A:)
Probab=73.52 E-value=0.79 Score=26.67 Aligned_cols=35 Identities=17% Similarity=0.404 Sum_probs=23.8
Q ss_pred HHHHHHCCCCHHHHHHHHCCCCHHHH---HHHHHHHCCC
Q ss_conf 99999818658899999678543466---6677751455
Q gi|254780431|r 11 LKKFWSEGLSASQIAVQLGGVTRNAV---IGKLHRLFLS 46 (178)
Q Consensus 11 LkkLW~eG~SasqIA~~lGgvtRNAV---IGK~hRLgLs 46 (178)
.+-.+.+|++.+|||++|| +||--| +-++..+|+.
T Consensus 27 a~lyY~~~~tQ~eIA~~l~-isr~~Vsr~l~~ar~~GiV 64 (345)
T 2o0m_A 27 RNIYWXQPIGRRSLSETXG-ITERVLRTETDVLKQLNLI 64 (345)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCE
T ss_conf 9999708968999998849-9788999999999987977
No 103
>>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc binding transcription factor; 2.40A {Rhodobacter sphaeroides 2} PDB: 2z2s_A (A:103-184)
Probab=73.06 E-value=1.1 Score=25.61 Aligned_cols=36 Identities=8% Similarity=0.229 Sum_probs=28.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999999998186588999996785434666677751
Q gi|254780431|r 7 RIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 7 rve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
.-+.+..-.-+|+|..+||+.|| +|+++|=-..||-
T Consensus 38 ~r~v~~l~~~~g~s~~eIA~~lg-is~~~v~~~l~ra 73 (82)
T 2q1z_A 38 QRALIERAFFGDLTHRELAAETG-LPLGTIKSRIRLA 73 (82)
T ss_dssp HHHHHHHHHHSCCSSCCSTTTCC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf 98899999991989999999989-3999999999999
No 104
>>3bdd_A Regulatory protein MARR; ZP_00875883.1, putative multiple antibiotic-resistance repressor (MARR), structural genomics; 2.20A {Streptococcus suis 89} (A:30-102)
Probab=72.78 E-value=8.1 Score=20.05 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHH-HCCCCHHHHHHHHCCCCHHHH---HHHHHHHCCCCCC
Q ss_conf 789999999999-818658899999678543466---6677751455445
Q gi|254780431|r 4 TVERIDKLKKFW-SEGLSASQIAVQLGGVTRNAV---IGKLHRLFLSNRV 49 (178)
Q Consensus 4 Tderve~LkkLW-~eG~SasqIA~~lGgvtRNAV---IGK~hRLgLs~R~ 49 (178)
|-.....|.-|+ ..|++.++||..|| +++++| |.+.-+.||-.|.
T Consensus 1 T~~q~~iL~~l~~~~~~~~~~la~~~~-~~~stvs~~i~~L~~~g~I~r~ 49 (73)
T 3bdd_A 1 SLTRYSILQTLLKDAPLHQLALQERLQ-IDRAAVTRHLKLLEESGYIIRK 49 (73)
T ss_dssp CHHHHHHHHHHHHHCSBCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEC
T ss_conf 999999999999869989999999987-1575899999999977880325
No 105
>>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} (A:)
Probab=72.66 E-value=6.4 Score=20.72 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCC
Q ss_conf 899999999998186588999996785434666677751---45544
Q gi|254780431|r 5 VERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNR 48 (178)
Q Consensus 5 derve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R 48 (178)
.-|...|+.|=..+++..+||+.|| +|++.|-=-...| ||-..
T Consensus 26 ~~Rl~Il~~L~~~~~~~~ela~~l~-is~stvs~HL~~L~~aglv~~ 71 (106)
T 1r1u_A 26 YNRIRIMELLSVSEASVGHISHQLN-LSQSNVSHQLKLLKSVHLVKA 71 (106)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEE
T ss_conf 9999999999839946999998876-586689999999998891489
No 106
>>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} (A:)
Probab=72.60 E-value=5.6 Score=21.10 Aligned_cols=43 Identities=19% Similarity=0.353 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH----HHCCCCC
Q ss_conf 78999999999981865889999967854346666777----5145544
Q gi|254780431|r 4 TVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLH----RLFLSNR 48 (178)
Q Consensus 4 Tderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~h----RLgLs~R 48 (178)
|+--.+.| .|..+|+|.-|||.+|| +|.+.|=--.- +||..++
T Consensus 36 t~rE~evl-~ll~~G~t~~eIA~~L~-iS~~TV~~~~~~i~~Klgv~s~ 82 (99)
T 1p4w_A 36 SPKESEVL-RLFAEGFLVTEIAKKLN-RSIKTISSQKKSAMMKLGVDND 82 (99)
T ss_dssp CHHHHHHH-HHHHHTCCHHHHHHHHT-SCHHHHHHHHHHHHHHHTCSSH
T ss_pred CHHHHHHH-HHHHCCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999999-99992899999998979-6999999999999998289999
No 107
>>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} (A:1-73)
Probab=72.55 E-value=6.2 Score=20.79 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHCC-CCHHHHHHHHC---CCCHHHHHHHHHHH---CCCCCCC
Q ss_conf 7789999999999818-65889999967---85434666677751---4554455
Q gi|254780431|r 3 WTVERIDKLKKFWSEG-LSASQIAVQLG---GVTRNAVIGKLHRL---FLSNRVK 50 (178)
Q Consensus 3 WTderve~LkkLW~eG-~SasqIA~~lG---gvtRNAVIGK~hRL---gLs~R~~ 50 (178)
=||---+.++-||..| .++.||.++|+ +.++|.|.--..|| |+-.|.+
T Consensus 8 Lt~~E~~iM~~iW~~~~~t~~ei~~~l~~~~~~~~~Tv~t~L~rL~~Kg~l~~~k 62 (73)
T 1okr_A 8 ISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKK 62 (73)
T ss_dssp CCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 8999999999998479968999999975135984516999999999889878883
No 108
>>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV} (A:)
Probab=72.50 E-value=4.3 Score=21.88 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=24.0
Q ss_pred HHHHHHH-HCCCCHHHHHHHHCCCCHHHHHH
Q ss_conf 9999999-81865889999967854346666
Q gi|254780431|r 9 DKLKKFW-SEGLSASQIAVQLGGVTRNAVIG 38 (178)
Q Consensus 9 e~LkkLW-~eG~SasqIA~~lGgvtRNAVIG 38 (178)
+.|++++ ..|+|-.|+|+.+| |+++.|-.
T Consensus 17 ~~lk~~R~~~glt~~~la~~~g-is~~~i~~ 46 (83)
T 3f6w_A 17 DLLLEARSAAGITQKELAARLG-RPQSFVSK 46 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHT-SCHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHC-CCHHHHHH
T ss_conf 9999999982999999998853-89999999
No 109
>>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A (A:1-70)
Probab=72.33 E-value=4.4 Score=21.80 Aligned_cols=31 Identities=16% Similarity=0.345 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHCCCCHHHHHH
Q ss_conf 899999999998186-5889999967854346666
Q gi|254780431|r 5 VERIDKLKKFWSEGL-SASQIAVQLGGVTRNAVIG 38 (178)
Q Consensus 5 derve~LkkLW~eG~-SasqIA~~lGgvtRNAVIG 38 (178)
.+|+..|++. .|+ |..|+|+.+| ||+++|--
T Consensus 8 ~~ri~~~r~~--~g~~tq~~lA~~lg-is~~~is~ 39 (70)
T 2fjr_A 8 VDVLDRICEA--YGFSQKIQLANHFD-IASSSLSN 39 (70)
T ss_dssp HHHHHHHHHH--HTCSSHHHHHHHTT-CCHHHHHH
T ss_pred HHHHHHHHHH--CCCCCHHHHHHHHC-CCHHHHHH
T ss_conf 9999999998--09876999999979-69999999
No 110
>>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} (A:35-101)
Probab=72.19 E-value=6.5 Score=20.66 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 899999999998--186588999996785434666677751---455445
Q gi|254780431|r 5 VERIDKLKKFWS--EGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 5 derve~LkkLW~--eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
-.....|.-||. +|++.++||+.|+ +++.+|=.-+.+| ||-.|.
T Consensus 3 ~~~~~vL~~l~~~~~~~t~~~la~~~~-~~~~tvs~~i~~L~~~G~I~r~ 51 (67)
T 2fbh_A 3 QARWLVLLHLARHRDSPTQRELAQSVG-VEGPTLARLLDGLESQGLVRRL 51 (67)
T ss_dssp TTHHHHHHHHHHCSSCCBHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEE
T ss_conf 999999999987599965999999989-7898899999999765661440
No 111
>>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV} (A:)
Probab=71.93 E-value=2.9 Score=22.96 Aligned_cols=43 Identities=28% Similarity=0.225 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCC
Q ss_conf 899999999998186588999996785434666677751---45544
Q gi|254780431|r 5 VERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNR 48 (178)
Q Consensus 5 derve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R 48 (178)
.-|..+|.-|=...++.+|||+.+| +|+.+|---..-| ||-.+
T Consensus 21 ~~Rl~IL~~L~~~~~~v~eLa~~l~-~s~stvS~HL~~L~~~glV~~ 66 (118)
T 2jsc_A 21 PTRCRILVALLDGVCYPGQLAAHLG-LTRSNVSNHLSCLRGCGLVVA 66 (118)
T ss_dssp HHHHHHHHHHHTTCCSTTTHHHHHS-SCHHHHHHHHHHHTTTTSEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEE
T ss_conf 9999999999819947999999988-566569999999988892179
No 112
>>3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} (A:1-133)
Probab=71.84 E-value=5.3 Score=21.27 Aligned_cols=46 Identities=24% Similarity=0.349 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHC--CCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCCC
Q ss_conf 78999999999981--86588999996785434666677751---4554455
Q gi|254780431|r 4 TVERIDKLKKFWSE--GLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRVK 50 (178)
Q Consensus 4 Tderve~LkkLW~e--G~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~~ 50 (178)
|......|--|+.. |+|.++||+.|| +|+++|-.-+.+| ||-.|..
T Consensus 46 t~~~~~il~~l~~~~~~~t~~~la~~l~-i~~~~vs~~i~~Le~~GlI~r~~ 96 (133)
T 3boq_A 46 SLAKFDAXAQLARNPDGLSXGKLSGALK-VTNGNVSGLVNRLIKDGXVVKAX 96 (133)
T ss_dssp CHHHHHHHHHHHHCTTCEEHHHHHHHCS-SCCSCHHHHHHHHHHHTSEEEC-
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 9999999999985899988999998877-78989999999998688867610
No 113
>>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} (A:)
Probab=71.58 E-value=6.6 Score=20.63 Aligned_cols=35 Identities=34% Similarity=0.505 Sum_probs=27.5
Q ss_pred HHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 999998186588999996785434666677751455
Q gi|254780431|r 11 LKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRLFLS 46 (178)
Q Consensus 11 LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRLgLs 46 (178)
+...-.+--.-++.|+.|| ++|+.+--|+.++||.
T Consensus 26 I~~aL~~~gn~~~aA~~Lg-isr~tL~rklkk~gi~ 60 (61)
T 1g2h_A 26 LKLFYAEYPSTRKLAQRLG-VSHTAIANKLKQYGIG 60 (61)
T ss_dssp HHHHHHHSCSHHHHHHHTT-SCTHHHHHHHHTTTCC
T ss_pred HHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHCCC
T ss_conf 9998403873899999958-6189999899984658
No 114
>>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* (A:1-53)
Probab=71.27 E-value=7.1 Score=20.41 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=29.7
Q ss_pred HHHHHHHHHHC-CCCHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 99999999981-865889999967854346666777514
Q gi|254780431|r 7 RIDKLKKFWSE-GLSASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 7 rve~LkkLW~e-G~SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
....|..|=.+ -+|..+||++|| ||+.+|--.+-+|-
T Consensus 5 D~~IL~~L~~d~r~~~~elA~~lg-vS~~tv~~ri~~L~ 42 (53)
T 2pn6_A 5 DLRILKILQYNAKYSLDEIAREIR-IPKATLSYRIKKLE 42 (53)
T ss_dssp HHHHHHHHTTCTTSCHHHHHHHHT-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf 999999999859999999999989-19999999999997
No 115
>>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228} (A:1-74)
Probab=71.06 E-value=3.8 Score=22.20 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 1865889999967854346666777514554
Q gi|254780431|r 17 EGLSASQIAVQLGGVTRNAVIGKLHRLFLSN 47 (178)
Q Consensus 17 eG~SasqIA~~lGgvtRNAVIGK~hRLgLs~ 47 (178)
..+|.++||++.| ||..+|+-=+..||..+
T Consensus 34 ~~~si~eiA~~~~-vS~stv~Rf~kklGf~g 63 (74)
T 3iwf_A 34 VNXTSQEIANQLE-TSSTSIIRLSKKVTPGG 63 (74)
T ss_dssp TTCCHHHHHHHHT-SCHHHHHHHHHHHSTTH
T ss_pred HHCCHHHHHHHHC-CCHHHHHHHHHHHCCCC
T ss_conf 7763999999979-99989999999958999
No 116
>>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A (A:52-107)
Probab=70.87 E-value=8.9 Score=19.77 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHC-CCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 7778999999999981-86588999996785434666677751
Q gi|254780431|r 2 VWTVERIDKLKKFWSE-GLSASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 2 sWTderve~LkkLW~e-G~SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
.||+|--++|.+|-.+ |..=++||..|+|=|-|.+--.-+.+
T Consensus 4 ~WT~EEd~~L~~~v~~~g~~W~~Ia~~~~~Rt~~q~k~r~~~~ 46 (56)
T 2k9n_A 4 PWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMI 46 (56)
T ss_dssp CCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 1529999999999988198699998677698999999999999
No 117
>>1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} (A:1-79)
Probab=70.44 E-value=3.5 Score=22.43 Aligned_cols=37 Identities=24% Similarity=0.432 Sum_probs=25.3
Q ss_pred HHHH-HHHHHHH-CC-CCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999-9999998-18-6588999996785434666677751
Q gi|254780431|r 6 ERID-KLKKFWS-EG-LSASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 6 erve-~LkkLW~-eG-~SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
+|.. +|+-|=. +| +|+.+||++|| ||+..|---+..|
T Consensus 21 ~R~~~Il~~L~~~~~~vt~~eLa~~l~-VS~~Ti~rdl~~L 60 (79)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELS-VSRQVIVQDIAYL 60 (79)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHT-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf 999999999998699776999999979-7999999999999
No 118
>>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} (A:1-131)
Probab=70.16 E-value=7.6 Score=20.23 Aligned_cols=46 Identities=17% Similarity=0.361 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHH-CCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCCC
Q ss_conf 7899999999998-186588999996785434666677751---4554455
Q gi|254780431|r 4 TVERIDKLKKFWS-EGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRVK 50 (178)
Q Consensus 4 Tderve~LkkLW~-eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~~ 50 (178)
|......|.-|+. +|+|.++||+.|| +++.+|=--+.+| ||-.|.+
T Consensus 40 t~~q~~iL~~i~~~~~~t~~~la~~l~-~~~s~vs~~i~~L~~~glV~r~~ 89 (131)
T 2qww_A 40 TIQQLAXINVIYSTPGISVADLTKRLI-ITGSSAAANVDGLISLGLVVKLN 89 (131)
T ss_dssp CHHHHHHHHHHHHSTTEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEESC
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 889999999999879989999999978-64466626657999877865232
No 119
>>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} (A:1-134)
Probab=69.60 E-value=9.5 Score=19.59 Aligned_cols=45 Identities=18% Similarity=0.090 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHCC-CCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 789999999999818-6588999996785434666677751---455445
Q gi|254780431|r 4 TVERIDKLKKFWSEG-LSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 4 Tderve~LkkLW~eG-~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
|-.....|.-|...| ++.++||+.+| +++++|-.-+.+| ||-.|.
T Consensus 48 t~~~~~iL~~l~~~~~~t~~~la~~~~-~~~~~vsr~v~~Le~~Glv~r~ 96 (134)
T 2fa5_A 48 AIPEWRVITILALYPGSSASEVSDRTA-XDKVAVSRAVARLLERGFIRRE 96 (134)
T ss_dssp CHHHHHHHHHHHHSTTCCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEC-
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHCCCCEEEC
T ss_conf 999999999998589979999999988-4888999999998318825330
No 120
>>1tlh_B Sigma-70, RNA polymerase sigma factor RPOD; anti-sigma, transcription; NMR {Escherichia coli} (B:)
Probab=69.48 E-value=2.8 Score=23.12 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=22.9
Q ss_pred HCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 818658899999678543466667775
Q gi|254780431|r 16 SEGLSASQIAVQLGGVTRNAVIGKLHR 42 (178)
Q Consensus 16 ~eG~SasqIA~~lGgvtRNAVIGK~hR 42 (178)
.+|+|-.+||+.|| +|++.|=.-.||
T Consensus 36 ~~~~t~~eIa~~lg-iS~~~V~~~~~r 61 (81)
T 1tlh_B 36 NTDYTLEEVGKQFD-VTRERIRQIEAK 61 (81)
T ss_dssp TSCCCHHHHHHHHH-HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHC-CCHHHHHHHHHH
T ss_conf 87566999999989-789999999999
No 121
>>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102} (A:1-56)
Probab=69.31 E-value=5.5 Score=21.14 Aligned_cols=32 Identities=13% Similarity=0.288 Sum_probs=23.5
Q ss_pred HHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9999999-81865889999967854346666777
Q gi|254780431|r 9 DKLKKFW-SEGLSASQIAVQLGGVTRNAVIGKLH 41 (178)
Q Consensus 9 e~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK~h 41 (178)
|.|++.= .-|+|+.++|+.|| |||+.|=.-++
T Consensus 21 eiL~e~Le~~gis~~~lA~~lg-vs~~~is~Ii~ 53 (56)
T 3cec_A 21 EVIADILDDLDINTANFAEILG-VSNQTIQEVIN 53 (56)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHT-SCHHHHHHHHT
T ss_pred HHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHC
T ss_conf 9999999987999999999978-27899999981
No 122
>>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} (A:1-68)
Probab=69.02 E-value=3.3 Score=22.59 Aligned_cols=32 Identities=9% Similarity=0.151 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH
Q ss_conf 77899999999998186588999996785434666
Q gi|254780431|r 3 WTVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 3 WTderve~LkkLW~eG~SasqIA~~lGgvtRNAVI 37 (178)
++.++|..|++- .|||..+.|..|| ||++.|-
T Consensus 30 ~~~~~ik~lR~~--~gLSQ~~fA~~lG-Vs~~ti~ 61 (68)
T 2ppx_A 30 PRXPRIKIIRRA--LKLTQEEFSARYH-IPLGTLR 61 (68)
T ss_dssp --CCHHHHHHHH--TTCCHHHHHHHHT-CCHHHHH
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHHC-CCHHHHH
T ss_conf 557999999999--4999999999967-6599999
No 123
>>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} (A:1-122)
Probab=68.58 E-value=9 Score=19.75 Aligned_cols=46 Identities=28% Similarity=0.221 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHH-CCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCCC
Q ss_conf 7899999999998-186588999996785434666677751---4554455
Q gi|254780431|r 4 TVERIDKLKKFWS-EGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRVK 50 (178)
Q Consensus 4 Tderve~LkkLW~-eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~~ 50 (178)
|......|.-|+. .|.|.++||+.++ +++.+|-.-+.+| ||-.|..
T Consensus 36 s~~q~~iL~~i~~~~~~t~~ela~~~~-i~~~~vsr~v~~L~~~g~v~r~~ 85 (122)
T 1s3j_A 36 TPAQLFVLASLKKHGSLKVSEIAERXE-VKPSAVTLXADRLEQKNLIARTH 85 (122)
T ss_dssp CHHHHHHHHHHHHHSEEEHHHHHHHHT-SCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999869979999999989-69989999999998624255202
No 124
>>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987} (A:1-118)
Probab=68.15 E-value=8.1 Score=20.03 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 789999999999-8186588999996785434666677751---455445
Q gi|254780431|r 4 TVERIDKLKKFW-SEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 4 Tderve~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
|......|..|+ .+++|.++||+.|| +++.+|-.-+.|| ||--|.
T Consensus 32 t~~~~~iL~~l~~~~~~t~~ela~~l~-i~~~tvs~~i~~L~~~gli~r~ 80 (118)
T 3bja_A 32 SYVQFGVIQVLAKSGKVSXSKLIENXG-CVPSNXTTXIQRXKRDGYVXTE 80 (118)
T ss_dssp CHHHHHHHHHHHHSCSEEHHHHHHHCS-SCCTTHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHC-CCCCHHHHHHHHHHHHHCEEEE
T ss_conf 999999999999869989999999868-5746187999998431154876
No 125
>>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, DNA binding protein/DNA complex, transferase; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A* (A:66-117)
Probab=67.96 E-value=4.8 Score=21.54 Aligned_cols=39 Identities=26% Similarity=0.287 Sum_probs=31.2
Q ss_pred HHHHHHHHHC--CCCHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 9999999981--865889999967854346666777514554
Q gi|254780431|r 8 IDKLKKFWSE--GLSASQIAVQLGGVTRNAVIGKLHRLFLSN 47 (178)
Q Consensus 8 ve~LkkLW~e--G~SasqIA~~lGgvtRNAVIGK~hRLgLs~ 47 (178)
.+.||.|=.+ =+|..+||++|| |+...|.--.+++|...
T Consensus 9 ~d~Lkalie~D~~~TtreiA~~Ln-vs~~TI~~hLk~iG~v~ 49 (52)
T 3hot_A 9 DAELQALLDEDDAQTQKQLAEQLE-VSQQAVSNRLREMGKIQ 49 (52)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHTT-SCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHC-CCHHHHHHHHHHCCCEE
T ss_conf 089999999664001899998856-48889999999728723
No 126
>>3gn5_A HTH-type transcriptional regulator MQSA (YGIT/B3021); Zn-binding protein, HTH-XRE DNA binding motif, DNA-binding, transcription regulation; HET: MEQ; 2.15A {Escherichia coli k-12} PDB: 3gn5_B* (A:72-133)
Probab=67.78 E-value=6.6 Score=20.63 Aligned_cols=34 Identities=24% Similarity=0.133 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf 7899999999998186588999996785434666677
Q gi|254780431|r 4 TVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKL 40 (178)
Q Consensus 4 Tderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~ 40 (178)
|-++|..|++ ..|+|..|+|+.+| ||.+.|-.--
T Consensus 1 tg~~ik~~R~--~~gltq~~lA~~~g-is~~~is~~E 34 (62)
T 3gn5_A 1 APEFIVKVRK--KLSLTQKEASEIFG-GGVNAFSRYE 34 (62)
T ss_dssp CHHHHHHHHH--HTTCCHHHHHHHHC-SCTTHHHHHH
T ss_pred CHHHHHHHHH--HCCCCHHHHHHHCC-CCHHHHHHHH
T ss_conf 9999999999--84999999998809-9999999998
No 127
>>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} (3:)
Probab=67.49 E-value=6.3 Score=20.75 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=24.5
Q ss_pred HHHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHH
Q ss_conf 99999999-818658899999678543466667
Q gi|254780431|r 8 IDKLKKFW-SEGLSASQIAVQLGGVTRNAVIGK 39 (178)
Q Consensus 8 ve~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK 39 (178)
-+.|+.|. ..|+|..|+|..+| |+++.|-.-
T Consensus 19 g~~lk~~R~~~g~sq~elA~~~g-is~~~i~~~ 50 (92)
T 1lmb_3 19 KAIYEKKKNELGLSQESVADKMG-MGQSGVGAL 50 (92)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHT-SCHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHH
T ss_conf 99999999992999999998888-788579999
No 128
>>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} (A:28-114)
Probab=67.00 E-value=6.6 Score=20.63 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=33.8
Q ss_pred HHHHHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 9999999999-8186588999996785434666677751---455445
Q gi|254780431|r 6 ERIDKLKKFW-SEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 6 erve~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
.....|.-|+ .++++.++||+.|| +++.+|-.-+.+| ||--|.
T Consensus 3 ~q~~iL~~l~~~~~~t~~~la~~l~-~~~~~vs~~v~~L~~~g~i~~~ 49 (87)
T 1lj9_A 3 GQYLYLVRVCENPGIIQEKIAELIK-VDRTTAARAIKRLEEQGFIYRQ 49 (87)
T ss_dssp THHHHHHHHHHSTTEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEC
T ss_conf 9999999998389979999999989-7885899999999988996306
No 129
>>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} (A:1-64)
Probab=66.99 E-value=11 Score=19.25 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 977789999999999-81865889999967854346666777514
Q gi|254780431|r 1 MVWTVERIDKLKKFW-SEGLSASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 1 MsWTderve~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
|.=+|-..+.|.-|= ..-+|+.+||++|| ||+.+|---+..|-
T Consensus 1 M~~~eR~~~Il~~L~~~~~is~~ela~~l~-vS~~Ti~rdi~~L~ 44 (64)
T 1bia_A 1 MKDNTVPLKLIALLANGEFHSGEQLGETLG-MSRAAINKHIQTLR 44 (64)
T ss_dssp CCCCHHHHHHHHHHTTSSCBCHHHHHHHHT-SCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf 987640899999985699468999999979-89999999999999
No 130
>>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} (A:1-131)
Probab=66.30 E-value=11 Score=19.16 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHH-CCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCCC
Q ss_conf 7899999999998-186588999996785434666677751---4554455
Q gi|254780431|r 4 TVERIDKLKKFWS-EGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRVK 50 (178)
Q Consensus 4 Tderve~LkkLW~-eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~~ 50 (178)
|-.....|--||. +|+|.++||+.++ +++.+|--.+.+| ||-.|..
T Consensus 45 t~~q~~iL~~l~~~~~~t~~~La~~~~-i~~~~vs~~v~~L~~~GlV~r~~ 94 (131)
T 3k0l_A 45 SLPQFTALSVLAAKPNLSNAKLAERSF-IKPQSANKILQDLLANGWIEKAP 94 (131)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHT-SCGGGHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHC-CCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 999999999999679979999999858-89464899999999879846743
No 131
>>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} (A:1-157)
Probab=66.28 E-value=8.8 Score=19.82 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHH----CCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCCC
Q ss_conf 7899999999998----186588999996785434666677751---4554455
Q gi|254780431|r 4 TVERIDKLKKFWS----EGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRVK 50 (178)
Q Consensus 4 Tderve~LkkLW~----eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~~ 50 (178)
|......|--||. +|+|.++||+.|| +++.+|=.-+.+| ||-.|..
T Consensus 68 ~~~~~~vL~~l~~~~~~~~~t~~~la~~l~-~~~~~vs~~i~~L~~~Gli~r~~ 120 (157)
T 2fbk_A 68 NAAGWDLLLTLYRSAPPEGLRPTELSALAA-ISGPSTSNRIVRLLEKGLIERRE 120 (157)
T ss_dssp CHHHHHHHHHHHHHCCSSCBCHHHHHHHCS-CCSGGGSSHHHHHHHHTSEECCC
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 999999999998628999969999999978-68757999999998667712310
No 132
>>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} (A:1-65)
Probab=66.21 E-value=7.4 Score=20.30 Aligned_cols=30 Identities=30% Similarity=0.525 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHH
Q ss_conf 999999999981865889999967854346666
Q gi|254780431|r 6 ERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIG 38 (178)
Q Consensus 6 erve~LkkLW~eG~SasqIA~~lGgvtRNAVIG 38 (178)
+|+..|++ ..|+|..|+|+.+| ||++.|--
T Consensus 4 ~~l~~lr~--~~g~sq~~lA~~~g-is~~~i~~ 33 (65)
T 1b0n_A 4 QRIKQYRK--EKGYSLSELAEKAG-VAKSYLSS 33 (65)
T ss_dssp HHHHHHHH--HTTCCHHHHHHHHT-CCHHHHHH
T ss_pred HHHHHHHH--HCCCCHHHHHHHHC-CCHHHHHH
T ss_conf 99999999--84999999987858-67999999
No 133
>>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} (A:51-89)
Probab=65.74 E-value=2.4 Score=23.55 Aligned_cols=20 Identities=15% Similarity=0.375 Sum_probs=17.1
Q ss_pred CCCCCCCHHHHHHHCCCCCC
Q ss_conf 68887716888887057751
Q gi|254780431|r 150 CNDSPYCDYHKKLAYQRVND 169 (178)
Q Consensus 150 ~~g~PYC~~H~~iAYQP~~~ 169 (178)
.+|.-||+.|+.-+|||...
T Consensus 19 ~~g~lYCe~~ar~r~~~p~p 38 (39)
T 1x64_A 19 VEGELYCETHARARTSGPSS 38 (39)
T ss_dssp ETTEEECHHHHHHHSSSCCC
T ss_pred ECCEEECHHHHHHHCCCCCC
T ss_conf 89989798899987389888
No 134
>>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} (A:1-91)
Probab=65.33 E-value=3.1 Score=22.82 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=31.9
Q ss_pred HHHHHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 9999999999-8186588999996785434666677751---455445
Q gi|254780431|r 6 ERIDKLKKFW-SEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 6 erve~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
.....|..|+ ..|+|.++||+.|| +|+++|=.-+.+| ||-.|.
T Consensus 14 ~~~~iL~~i~~~~~~t~~ela~~l~-i~~~~vs~~i~~L~~~gli~r~ 60 (91)
T 3cta_A 14 KKIKEAAEASNRAYLTSSKLADMLG-ISQQSASRIIIDLEKNGYITRT 60 (91)
T ss_dssp HHHHHHTTTSSEEECCHHHHHHHHT-SCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEE
T ss_conf 9999856404799838999999988-7887999999999988998997
No 135
>>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A (A:1-76)
Probab=65.26 E-value=1 Score=25.88 Aligned_cols=44 Identities=18% Similarity=0.098 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCC
Q ss_conf 7899999999998186588999996785434666677751---45544
Q gi|254780431|r 4 TVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNR 48 (178)
Q Consensus 4 Tderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R 48 (178)
.+-|...|+.|...|++.+|||+++| +|..+|---...| ||-..
T Consensus 11 ~~~Rl~Il~~L~~~~~~v~eLa~~~~-is~stiS~HL~~L~~~GlV~~ 57 (76)
T 2qlz_A 11 NKVRRDLLSHLTCXECYFSLLSSKVS-VSSTAVAKHLKIXEREGVLQS 57 (76)
T ss_dssp SHHHHHHHHHHTTTTTCSSSSCTTCC-CCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEE
T ss_conf 99999999999819996999999989-198899999999986997589
No 136
>>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} (A:)
Probab=64.89 E-value=10 Score=19.33 Aligned_cols=41 Identities=20% Similarity=0.193 Sum_probs=32.4
Q ss_pred HHHHHHHHH-CCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 999999998-186588999996785434666677751---455445
Q gi|254780431|r 8 IDKLKKFWS-EGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 8 ve~LkkLW~-eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
.-+|.-+|. .|+|.++||+.|| +++.+|-.-+.+| ||-.|.
T Consensus 25 ~vll~~l~~~~~~t~~eLa~~l~-i~~~tvs~~l~~L~~~glI~r~ 69 (109)
T 2d1h_A 25 AVLLKXVEIEKPITSEELADIFK-LSKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHCCCCCCHHHHHHHHC-CCCCHHHHHHHHHHHCCCCEEE
T ss_conf 99999998496989999999978-8723499999999987986362
No 137
>>2heo_A Z-DNA binding protein 1; protein DLM1/Z-DNA complex, immune system/DNA complex; 1.70A {Mus musculus} PDB: 1j75_A (A:)
Probab=64.88 E-value=12 Score=18.99 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHCC--CCHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 789999999999818--65889999967854346666777514554
Q gi|254780431|r 4 TVERIDKLKKFWSEG--LSASQIAVQLGGVTRNAVIGKLHRLFLSN 47 (178)
Q Consensus 4 Tderve~LkkLW~eG--~SasqIA~~lGgvtRNAVIGK~hRLgLs~ 47 (178)
+|-.-..|.-|=.+| +++.+||+.|| |.|.-|==-.++|-=.+
T Consensus 9 ~d~ee~IL~~L~e~g~p~~a~~Iae~lg-v~kkeV~k~L~~Lkkeg 53 (67)
T 2heo_A 9 DNLEQKILQVLSDDGGPVAIFQLVKKCQ-VPKKTLNQVLYRLKKED 53 (67)
T ss_dssp CHHHHHHHHHHHHHCSCEEHHHHHHHHC-SCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCC
T ss_conf 5789999999997689687999999978-88899999999998774
No 138
>>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} (A:31-133)
Probab=64.86 E-value=8.9 Score=19.79 Aligned_cols=45 Identities=13% Similarity=0.071 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 789999999999-8186588999996785434666677751---455445
Q gi|254780431|r 4 TVERIDKLKKFW-SEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 4 Tderve~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
|......|.-|| ..|+|.++||+.+| +++.+|-.-+.+| ||--|.
T Consensus 12 ~~~~~~iL~~i~~~~~~t~~~la~~~~-~~~~~vsr~i~~L~~~g~i~r~ 60 (103)
T 3cdh_A 12 RVPEWRVLACLVDNDAXXITRLAKLSL-XEQSRXTRIVDQXDARGLVTRV 60 (103)
T ss_dssp CHHHHHHHHHHSSCSCBCHHHHHHHTT-CCHHHHHHHHHHHHHTTSEEEC
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHC-CCCCCCCHHHHHHHHCCCEEEE
T ss_conf 999999999998188959999999968-8864365569998722243542
No 139
>>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus} (A:)
Probab=64.86 E-value=5.5 Score=21.17 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH---HHHCCCCCCCCCC
Q ss_conf 899999999998186588999996785434666677---7514554455544
Q gi|254780431|r 5 VERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKL---HRLFLSNRVKVNE 53 (178)
Q Consensus 5 derve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~---hRLgLs~R~~~~~ 53 (178)
.-|+.+|.-|=...++.++||.+|| +|..+|---. .+.||-.+.+.++
T Consensus 11 ptRl~Il~~L~~g~~tv~eLa~~lg-is~~tvS~HL~~L~~~GlV~~~r~Gr 61 (165)
T 2vxz_A 11 VRLRDILALLADGCKTTSLIQQRLG-LSHGRAKALIYVLEKEGRVTRVAFGN 61 (165)
T ss_dssp HHHHHHHHHHTTCCEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSCEEEEETT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHC-CHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9999999999754508999999826-50899999999998668169998634
No 140
>>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} (A:1-55)
Probab=64.63 E-value=2.2 Score=23.74 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=29.6
Q ss_pred HHHHHHHHH-CCCCHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 999999998-1865889999967854346666777514
Q gi|254780431|r 8 IDKLKKFWS-EGLSASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 8 ve~LkkLW~-eG~SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
...|..|.. --+|.++||++|| +|+.+|-..+.+|-
T Consensus 8 ~~IL~~L~~~~r~s~~ela~~lg-is~~tv~~ri~~L~ 44 (55)
T 2cg4_A 8 RGILEALMGNARTAYAELAKQFG-VSPETIHVRVEKMK 44 (55)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHH-HHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHH-HHCCCHHHHHHHHH
T ss_conf 99999999999858999999999-98877589999999
No 141
>>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:48-80)
Probab=64.58 E-value=2.2 Score=23.82 Aligned_cols=12 Identities=25% Similarity=0.888 Sum_probs=9.7
Q ss_pred CCCCCCCHHHHH
Q ss_conf 688877168888
Q gi|254780431|r 150 CNDSPYCDYHKK 161 (178)
Q Consensus 150 ~~g~PYC~~H~~ 161 (178)
-+|.|||+.|.-
T Consensus 12 h~G~P~Ce~HyH 23 (33)
T 1x3h_A 12 LDGRPFCELHYH 23 (33)
T ss_dssp SSSCEECHHHHH
T ss_pred ECCEEECHHHHH
T ss_conf 899996778889
No 142
>>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} (A:27-127)
Probab=64.23 E-value=8.3 Score=19.99 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHH---CCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCCC
Q ss_conf 7899999999998---186588999996785434666677751---4554455
Q gi|254780431|r 4 TVERIDKLKKFWS---EGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRVK 50 (178)
Q Consensus 4 Tderve~LkkLW~---eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~~ 50 (178)
|......|.-|+. .|+|.++||+.|| +++.+|=.-+.+| ||-.|..
T Consensus 14 t~~~~~vL~~l~~~~~~~~t~~~La~~~~-~~~~~vs~~i~~L~~~gli~r~~ 65 (101)
T 3jw4_A 14 NSQQGRXIGYIYENQESGIIQKDLAQFFG-RRGASITSXLQGLEKKGYIERRI 65 (101)
T ss_dssp CHHHHHHHHHHHHHTTTCCCHHHHHHC-------CHHHHHHHHHHTTSBCCC-
T ss_pred CHHHHHHHHHHHCCCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEECC
T ss_conf 99999999999808999979999999989-78858999999999888963157
No 143
>>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2} (A:)
Probab=63.93 E-value=8.7 Score=19.84 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=21.7
Q ss_pred HHHHHH-HCCCCHHHHHHHHCCCCHHHHHHH
Q ss_conf 999999-818658899999678543466667
Q gi|254780431|r 10 KLKKFW-SEGLSASQIAVQLGGVTRNAVIGK 39 (178)
Q Consensus 10 ~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK 39 (178)
.|+++= ..|+|..|+|+.+| |+++.|-.-
T Consensus 14 ~lk~~r~~~glsq~ela~~~g-is~~~i~~~ 43 (84)
T 2ef8_A 14 LLTKLRKEASLSQSELAIFLG-LSQSDISKI 43 (84)
T ss_dssp HHHHHHHHTTCCHHHHHHHHT-CCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHH-CCHHHHHHH
T ss_conf 999999985999999999854-158779999
No 144
>>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3} (A:1-125)
Probab=63.83 E-value=12 Score=18.90 Aligned_cols=46 Identities=24% Similarity=0.297 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHH-HCCCCHHHHHHHHCCCCHHHH---HHHHHHHCCCCCCC
Q ss_conf 789999999999-818658899999678543466---66777514554455
Q gi|254780431|r 4 TVERIDKLKKFW-SEGLSASQIAVQLGGVTRNAV---IGKLHRLFLSNRVK 50 (178)
Q Consensus 4 Tderve~LkkLW-~eG~SasqIA~~lGgvtRNAV---IGK~hRLgLs~R~~ 50 (178)
|......|..|+ .+|+|.++||+.+| +++.+| |.+.-+.||--|..
T Consensus 39 t~~q~~iL~~l~~~~~~t~~~la~~~~-~~~~~vs~~i~~L~~~GlV~r~~ 88 (125)
T 3bj6_A 39 TVGQRAILEGLSLTPGATAPQLGAALQ-XKRQYISRILQEVQRAGLIERRT 88 (125)
T ss_dssp CHHHHHHHHHHHHSTTEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHHCCEEEEE
T ss_conf 999999999999869989999999988-65758999999998706557655
No 145
>>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli} (A:1-73)
Probab=62.41 E-value=13 Score=18.70 Aligned_cols=40 Identities=28% Similarity=0.407 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 77899999999998186588999996785434666677751
Q gi|254780431|r 3 WTVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 3 WTderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
-.|..|+..+..-=+|.+.++.|.++| +||-+|---+.|.
T Consensus 19 ~~~~ti~iAR~VLV~G~~~~evA~~~G-lsrq~V~~~V~rv 58 (73)
T 2w7n_A 19 VGQQTIEIARGVLVDGKPQATFATSLG-LTRGAVSQAVHRV 58 (73)
T ss_dssp CCHHHHHHHHHHHTTCCCHHHHHHHHT-CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHC-CHHHHHHHHHHHH
T ss_conf 438999999999968820999999967-3098999999999
No 146
>>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} (B:)
Probab=62.21 E-value=9.5 Score=19.58 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=22.3
Q ss_pred HHHHHHHHHH----CCCCHHHHHHHHCCCCHHHHHH
Q ss_conf 9999999998----1865889999967854346666
Q gi|254780431|r 7 RIDKLKKFWS----EGLSASQIAVQLGGVTRNAVIG 38 (178)
Q Consensus 7 rve~LkkLW~----eG~SasqIA~~lGgvtRNAVIG 38 (178)
--+.|.--++ +.+|-.+||..|| |||..|==
T Consensus 10 Er~Ii~lrfGl~~~~~~tl~eia~~lg-iS~erVrq 44 (68)
T 2p7v_B 10 EAKVLRMRFGIDMNTDYTLEEVGKQFD-VTRERIRQ 44 (68)
T ss_dssp HHHHHHHHTTTTSSSCCCHHHHHHHHT-CCHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHC-CCHHHHHH
T ss_conf 999999983888999788999999989-78999999
No 147
>>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} (A:)
Probab=61.92 E-value=12 Score=18.93 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHCC-CCHHHHHHHHC---CCCHHHHHHHHHHH---CCCCCCCC
Q ss_conf 7789999999999818-65889999967---85434666677751---45544555
Q gi|254780431|r 3 WTVERIDKLKKFWSEG-LSASQIAVQLG---GVTRNAVIGKLHRL---FLSNRVKV 51 (178)
Q Consensus 3 WTderve~LkkLW~eG-~SasqIA~~lG---gvtRNAVIGK~hRL---gLs~R~~~ 51 (178)
=||---+.++-||..| .|+.+|...|+ |.++|.|.--..|| |+-.|.+.
T Consensus 7 Lt~~E~~IM~~lW~~~~~t~~ei~~~l~~~~~~~~~Tv~t~L~rL~~Kg~i~~~~~ 62 (82)
T 1p6r_A 7 ISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKE 62 (82)
T ss_dssp CCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 99999999999981799789999998602369728579999999998898688725
No 148
>>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Silicibacter pomeroyi} (A:)
Probab=60.37 E-value=10 Score=19.37 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=22.6
Q ss_pred HHHHHHH-HCCCCHHHHHHHHCCCCHHHHH
Q ss_conf 9999999-8186588999996785434666
Q gi|254780431|r 9 DKLKKFW-SEGLSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 9 e~LkkLW-~eG~SasqIA~~lGgvtRNAVI 37 (178)
+.||.+- ..|+|-.|+|..+| ||+..|-
T Consensus 17 ~~lk~~R~~~gltq~~lA~~~g-is~~~is 45 (86)
T 3eus_A 17 QRLRQARLDAGLTQADLAERLD-KPQSFVA 45 (86)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTT-CCHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHC-CCHHHHH
T ss_conf 9999999984999999999979-6999999
No 149
>>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} (A:)
Probab=60.18 E-value=8.8 Score=19.80 Aligned_cols=31 Identities=19% Similarity=0.071 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf 18658899999678543466667775145544
Q gi|254780431|r 17 EGLSASQIAVQLGGVTRNAVIGKLHRLFLSNR 48 (178)
Q Consensus 17 eG~SasqIA~~lGgvtRNAVIGK~hRLgLs~R 48 (178)
..+|..+||++.| ||...|+==+++||..+=
T Consensus 38 ~~~si~eiA~~~~-vS~sTI~Rf~kkLGy~gf 68 (111)
T 2o3f_A 38 IESTVNEISALAN-SSDAAVIRLCXSLGLKGF 68 (111)
T ss_dssp HTCCHHHHHHHTT-CCHHHHHHHHHHTTCSSH
T ss_pred HHCCHHHHHHHHC-CCHHHHHHHHHHHCCCCH
T ss_conf 5557999999979-899999999999667989
No 150
>>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} (A:1-82,A:382-406)
Probab=60.04 E-value=14 Score=18.44 Aligned_cols=39 Identities=8% Similarity=-0.011 Sum_probs=32.0
Q ss_pred HHHHHHHHHHC-CCCHHHHHHHHCCCCHHHHHHHHHHH---CCC
Q ss_conf 99999999981-86588999996785434666677751---455
Q gi|254780431|r 7 RIDKLKKFWSE-GLSASQIAVQLGGVTRNAVIGKLHRL---FLS 46 (178)
Q Consensus 7 rve~LkkLW~e-G~SasqIA~~lGgvtRNAVIGK~hRL---gLs 46 (178)
+...|+-|+.. .+|.++||+++| +|+-+|---+..| ||-
T Consensus 18 ~~~IL~lL~~~g~~Sr~eLA~~lg-LS~~TVs~iv~eL~e~GlV 60 (107)
T 1z6r_A 18 AGAVYRLIDQLGPVSRIDLSRLAQ-LAPASITKIVHEXLEAHLV 60 (107)
T ss_dssp HHHHHHHHHSSCSCCHHHHHHHTT-CCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCE
T ss_conf 999999999859918999998879-5999999999999988988
No 151
>>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} (A:401-487)
Probab=59.57 E-value=10 Score=19.38 Aligned_cols=46 Identities=20% Similarity=0.160 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHC---CCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 778999999999981---86588999996785434666677751---455445
Q gi|254780431|r 3 WTVERIDKLKKFWSE---GLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 3 WTderve~LkkLW~e---G~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
+|-.....|.-|+.. +++.++|++.|| +++++|-.-+.+| ||-.|.
T Consensus 2 lt~~~~~iL~~l~~~~~~~~t~~~l~~~l~-~~~~~vs~~i~~L~~~g~i~r~ 53 (87)
T 1hsj_A 2 LNYEEIYILNHILRSESNEISSKEIAKCSE-FKPYYLTKALQKLKDLKLLSKK 53 (87)
T ss_dssp CCHHHHHHHHHHHTCSCSEEEHHHHHHSSC-CCHHHHHHHHHHHHTTTTSCCE
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHCC-CCCCCHHHHHHHHHHCCCCCCC
T ss_conf 130289999999986157864999986416-7811204889887751210111
No 152
>>2iw5_B Protein corest, REST corepressor 1; oxidoreductase/transcription regulator, oxidoreductase/repressor complex, histone demethylase; HET: FAD; 2.57A {Homo sapiens} (B:128-235)
Probab=58.42 E-value=15 Score=18.25 Aligned_cols=43 Identities=16% Similarity=0.054 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 77789999999999-81865889999967854346666777514
Q gi|254780431|r 2 VWTVERIDKLKKFW-SEGLSASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 2 sWTderve~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
.||+|-.++|.++- .-|.-=+.||+.|||=|.++|.-.-+.+-
T Consensus 8 ~WT~eEd~~l~~~~~~~G~~W~~Ia~~l~~Rt~~qc~~r~~~~~ 51 (108)
T 2iw5_B 8 RWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 51 (108)
T ss_dssp SCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 98999999999999983916999987639989999999999999
No 153
>>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} (A:156-250)
Probab=58.40 E-value=15 Score=18.25 Aligned_cols=44 Identities=9% Similarity=-0.043 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHC---CCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 8999999999981---86588999996785434666677751---455445
Q gi|254780431|r 5 VERIDKLKKFWSE---GLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 5 derve~LkkLW~e---G~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
-.....|.-|+.. ++|.++||+.|| +++.+|-.-+.+| ||-.|.
T Consensus 3 ~~q~~iL~~l~~~~~~~~t~~~la~~l~-~~~~~~s~~i~~L~~~G~I~r~ 52 (95)
T 1p4x_A 3 FVEFTILAIITSQNKNIVLLKDLIETIH-HKYPQTVRALNNLKKQGYLIKE 52 (95)
T ss_dssp HHHHHHHHHHHTTTTCCEEHHHHHHHSS-SCHHHHHHHHHHHHHHTSSEEE
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEE
T ss_conf 9999999999859999676999999978-8851599999999988998972
No 154
>>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} (A:1-76)
Probab=57.97 E-value=13 Score=18.69 Aligned_cols=31 Identities=29% Similarity=0.317 Sum_probs=22.9
Q ss_pred HHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9999999-8186588999996785434666677
Q gi|254780431|r 9 DKLKKFW-SEGLSASQIAVQLGGVTRNAVIGKL 40 (178)
Q Consensus 9 e~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK~ 40 (178)
+.|+++= ..|+|..|+|+.+| ||++.|----
T Consensus 14 ~~lk~~r~~~gltq~~lA~~~g-is~~~i~~~e 45 (76)
T 1y9q_A 14 NQLKNLRKSRGLSLDATAQLTG-VSKAXLGQIE 45 (76)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHS-SCHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHH
T ss_conf 9999999982999999999989-4999999997
No 155
>>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} (A:)
Probab=57.64 E-value=16 Score=18.17 Aligned_cols=42 Identities=24% Similarity=0.273 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCC
Q ss_conf 899999999998186588999996785434666677751---45544
Q gi|254780431|r 5 VERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNR 48 (178)
Q Consensus 5 derve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R 48 (178)
.-|...|+.|= +|.++++|+..+| ++..+|--..--| ||-..
T Consensus 31 p~R~~Il~~L~-~~~~~~eLa~~~~-i~~stvs~HL~~L~~agLV~~ 75 (96)
T 1y0u_A 31 PVRRKILRXLD-KGRSEEEIXQTLS-LSKKQLDYHLKVLEAGFCIER 75 (96)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEE
T ss_conf 99999999844-5417889999989-398899999999986895897
No 156
>>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} (L:)
Probab=57.29 E-value=13 Score=18.80 Aligned_cols=27 Identities=11% Similarity=0.227 Sum_probs=20.3
Q ss_pred HHHHHH-HCCCCHHHHHHHHCCCCHHHHH
Q ss_conf 999999-8186588999996785434666
Q gi|254780431|r 10 KLKKFW-SEGLSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 10 ~LkkLW-~eG~SasqIA~~lGgvtRNAVI 37 (178)
.|+.+= ..|+|.+|+|+.+| +|++.|-
T Consensus 9 ~lk~~r~~~~ls~~~la~~~g-is~~~i~ 36 (68)
T 2r1j_L 9 RIRARRKKLKIRQAALGKMVG-VSNVAIS 36 (68)
T ss_dssp HHHHHHHHHTCCHHHHHHHHT-SCHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHC-CCHHHHH
T ss_conf 999999984999999998969-7999999
No 157
>>2z64_C Lymphocyte antigen 96; TLR4, TOLL-like receptor, MD-2, LPS, disease mutation, glycoprotein, immune response, inflammatory response, innate immunity; HET: NAG BMA NDG FUL; 2.84A {Mus musculus} (C:)
Probab=56.80 E-value=3.5 Score=22.44 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCCCCEECCCCC
Q ss_conf 200557899864500478787
Q gi|254780431|r 129 TCKWPLGDPFGKDFSFCGSDV 149 (178)
Q Consensus 129 tCkWPiGDP~~~dF~FCG~~~ 149 (178)
+=+.||=.++.++|.|||+.-
T Consensus 69 ~~ke~iC~~~~~~ySFCg~lK 89 (135)
T 2z64_C 69 KRKEVLCHGHDDDYSFCRALK 89 (135)
T ss_dssp CEEEECCCSSSCSSGGGGCCT
T ss_pred CCCCCEECCCCCCCEEECCCC
T ss_conf 222321368998626514446
No 158
>>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} (C:)
Probab=56.55 E-value=16 Score=18.05 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHC-CC-CHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 7778999999999981-86-5889999967854346666777514
Q gi|254780431|r 2 VWTVERIDKLKKFWSE-GL-SASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 2 sWTderve~LkkLW~e-G~-SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
.||+|--++|.+|-.+ |. .=+.||+.||+-|.+.+--+-..+-
T Consensus 29 ~WT~eED~~L~~lv~~~g~~~W~~Ia~~~~~Rt~~qcr~rw~~~l 73 (128)
T 1h8a_C 29 PWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp CCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 999899999999999967587889898835877888999999862
No 159
>>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} (A:)
Probab=56.47 E-value=14 Score=18.47 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=21.9
Q ss_pred HHHHHHH-HCCCCHHHHHHHHCCCCHHHHH
Q ss_conf 9999999-8186588999996785434666
Q gi|254780431|r 9 DKLKKFW-SEGLSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 9 e~LkkLW-~eG~SasqIA~~lGgvtRNAVI 37 (178)
+.|+++= ..|+|..|+|+.+| ||++.|-
T Consensus 13 ~~l~~~r~~~gltq~~la~~~g-is~~~i~ 41 (77)
T 2b5a_A 13 RTLKKIRTQKGVSQEELADLAG-LHRTYIS 41 (77)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHT-CCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHC-CCHHHHH
T ss_conf 9999999980999999998969-7999999
No 160
>>2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} (A:16-135)
Probab=55.41 E-value=11 Score=19.12 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=30.8
Q ss_pred HHHHHHHCCC---CHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 9999998186---588999996785434666677751---455445
Q gi|254780431|r 10 KLKKFWSEGL---SASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 10 ~LkkLW~eG~---SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
.|..++.+|. |-++||+.+| +|++.|..-.++| ||=.+.
T Consensus 25 ~l~~~~~~g~~~pS~~~iA~~~g-~s~~tV~~~l~~L~~~Gli~~~ 69 (120)
T 2v79_A 25 KIKMHLEKGSYFPTPNQLQEGMS-ISVEECTNRLRMFIQKGFLFIE 69 (120)
T ss_dssp HHHHHHTTTCCSCCHHHHHTTSS-SCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHCCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEE
T ss_conf 99999876999989999999969-8999999999999988997998
No 161
>>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A (A:)
Probab=55.05 E-value=15 Score=18.23 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=23.6
Q ss_pred HHHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHH
Q ss_conf 99999999-818658899999678543466667
Q gi|254780431|r 8 IDKLKKFW-SEGLSASQIAVQLGGVTRNAVIGK 39 (178)
Q Consensus 8 ve~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK 39 (178)
-..|++|= ..|+|..|+|+.+| ||+..|-.-
T Consensus 30 ~~~lk~~r~~~gltq~elA~~~g-is~~~i~~~ 61 (99)
T 3g5g_A 30 SFVIKKIRLEKGMTQEDLAYKSN-LDRTYISGI 61 (99)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHT-CCHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHH
T ss_conf 99999999984999999996567-742389999
No 162
>>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp} (A:)
Probab=55.01 E-value=15 Score=18.21 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=20.1
Q ss_pred HHHHHHH-HCCCCHHHHHHHHCCCCHHHH
Q ss_conf 9999999-818658899999678543466
Q gi|254780431|r 9 DKLKKFW-SEGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 9 e~LkkLW-~eG~SasqIA~~lGgvtRNAV 36 (178)
+.||++= ..|+|..|+|+++| ||+..|
T Consensus 6 ~~lr~~R~~~glt~~elA~~~g-is~~~i 33 (130)
T 3fym_A 6 EALKGRRERLGMTLTELEQRTG-IKREML 33 (130)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHC-CCHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHC-CCHHHH
T ss_conf 9999999996999999998829-899999
No 163
>>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=54.54 E-value=18 Score=17.84 Aligned_cols=40 Identities=20% Similarity=0.119 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHH-HCCCCHHHHHHHH---CCCCHHHHHHHHH
Q ss_conf 77789999999999-8186588999996---7854346666777
Q gi|254780431|r 2 VWTVERIDKLKKFW-SEGLSASQIAVQL---GGVTRNAVIGKLH 41 (178)
Q Consensus 2 sWTderve~LkkLW-~eG~SasqIA~~l---GgvtRNAVIGK~h 41 (178)
.||+|-.++|..|- .-|..=++||+++ +|=|-|+|--+-+
T Consensus 10 ~wT~eEd~~L~~lv~~~G~~W~~Ia~~~~~~~~Rt~~~iknr~~ 53 (62)
T 1x58_A 10 DFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYH 53 (62)
T ss_dssp SCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 44599999999879985332656642067787721667999999
No 164
>>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A (A:)
Probab=54.46 E-value=14 Score=18.52 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=22.3
Q ss_pred HHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHH
Q ss_conf 9999999-818658899999678543466667
Q gi|254780431|r 9 DKLKKFW-SEGLSASQIAVQLGGVTRNAVIGK 39 (178)
Q Consensus 9 e~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK 39 (178)
+.|+.|= ..|+|..|+|+.+| |+++.|=.-
T Consensus 31 ~~l~~~R~~~g~tq~elA~~~g-is~~~is~~ 61 (117)
T 3f52_A 31 AALRSFRADKGVTLRELAEASR-VSPGYLSEL 61 (117)
T ss_dssp HHHHHHHHHHTCCHHHHHHHTT-SCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHH
T ss_conf 9999999995989999998860-307789999
No 165
>>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12} (A:)
Probab=53.92 E-value=16 Score=18.14 Aligned_cols=31 Identities=26% Similarity=0.188 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHH
Q ss_conf 9999999999818658899999678543466667
Q gi|254780431|r 6 ERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGK 39 (178)
Q Consensus 6 erve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK 39 (178)
++|..+++ ..|+|..|+|+.+| ||++.|-.-
T Consensus 14 ~~ir~~R~--~~glsq~~lA~~~g-is~~~is~~ 44 (73)
T 3fmy_A 14 EFIVKVRK--KLSLTQKEASEIFG-GGVNAFSRY 44 (73)
T ss_dssp HHHHHHHH--HTTCCHHHHHHHHC-SCTTHHHHH
T ss_pred HHHHHHHH--HCCCCHHHHHHHHC-CCHHHHHHH
T ss_conf 99999999--86999999999979-899999999
No 166
>>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} (A:)
Probab=53.17 E-value=17 Score=17.91 Aligned_cols=29 Identities=31% Similarity=0.499 Sum_probs=21.8
Q ss_pred HHHHHH-HCCCCHHHHHHHHCCCCHHHHHHH
Q ss_conf 999999-818658899999678543466667
Q gi|254780431|r 10 KLKKFW-SEGLSASQIAVQLGGVTRNAVIGK 39 (178)
Q Consensus 10 ~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK 39 (178)
.|+.+= ..|+|..++|+.+| ||++.|-.-
T Consensus 17 ~ik~~R~~~gltq~~lA~~~g-is~~~i~~~ 46 (74)
T 1y7y_A 17 RLRELRTAKGLSQETLAFLSG-LDRSYVGGV 46 (74)
T ss_dssp HHHHHHHHTTCCHHHHHHHHT-CCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHC-CCHHHHHHH
T ss_conf 999999980999999998989-699999999
No 167
>>3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP} (A:)
Probab=53.08 E-value=17 Score=17.89 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=21.4
Q ss_pred HHHHHHH-HCCCCHHHHHHHHCCCCHHHHH
Q ss_conf 9999999-8186588999996785434666
Q gi|254780431|r 9 DKLKKFW-SEGLSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 9 e~LkkLW-~eG~SasqIA~~lGgvtRNAVI 37 (178)
+.|+.+= ..|+|..|+|+.+| ||++.|-
T Consensus 14 ~~lk~~r~~~glsq~~lA~~~g-vs~~~i~ 42 (82)
T 3clc_A 14 FVIKKIRLEKGMTQEDLAYKSN-LDRTYIS 42 (82)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHT-SCHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHCCC-CCHHHHH
T ss_conf 9999999984999999961557-4798999
No 168
>>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} (A:)
Probab=52.98 E-value=17 Score=17.87 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHH
Q ss_conf 999999999981865889999967854346666
Q gi|254780431|r 6 ERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIG 38 (178)
Q Consensus 6 erve~LkkLW~eG~SasqIA~~lGgvtRNAVIG 38 (178)
+||..+++ ..|+|..|+|+.+| ||++.|-.
T Consensus 6 ~rlk~~r~--~~g~sq~~lA~~~g-is~~~is~ 35 (71)
T 1zug_A 6 ERLKKRRI--ALKMTQTELATKAG-VKQQSIQL 35 (71)
T ss_dssp HHHHHHHH--HTTCCHHHHHHHHT-SCHHHHHH
T ss_pred HHHHHHHH--HCCCCHHHHHHHHH-CCHHHHHH
T ss_conf 99999999--84999999999971-58999999
No 169
>>1cg5_B Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} (B:)
Probab=52.98 E-value=19 Score=17.68 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 97778999999999981865889999967
Q gi|254780431|r 1 MVWTVERIDKLKKFWSEGLSASQIAVQLG 29 (178)
Q Consensus 1 MsWTderve~LkkLW~eG~SasqIA~~lG 29 (178)
|++|++-+..+++-|.. +...+++..+-
T Consensus 1 m~Lt~~q~~~I~~sW~~-v~~~~~g~~~~ 28 (141)
T 1cg5_B 1 VKLSEDQEHYIKGVWKD-VDHKQITAKAL 28 (141)
T ss_dssp CCCCHHHHHHHHHHHHH-SCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-CCHHHHHHHHH
T ss_conf 99998999999999980-79277799999
No 170
>>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} (A:1-46)
Probab=52.82 E-value=2 Score=24.02 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=20.6
Q ss_pred HCCCCHHHHHHHHCCCCHH--HHHHHHHHHCC
Q ss_conf 8186588999996785434--66667775145
Q gi|254780431|r 16 SEGLSASQIAVQLGGVTRN--AVIGKLHRLFL 45 (178)
Q Consensus 16 ~eG~SasqIA~~lGgvtRN--AVIGK~hRLgL 45 (178)
..|++.++||+.|| .||- ++|.|.-|-+.
T Consensus 3 ~~GltQ~eIA~~Lg-TSRANis~IEk~A~eNI 33 (46)
T 1nr3_A 3 ERGWSQKKIARELK-TTRQNVSAIERKAMENI 33 (46)
T ss_dssp CCSCSSCSTHHHHH-HCCSSSCCHHHHHHTTC
T ss_pred CCCCCHHHHHHHHC-CCHHHHHHHHHHHHHHH
T ss_conf 25677999999977-65889999999999999
No 171
>>1adr_A P22 C2 repressor; transcription regulation; NMR {Bacteriophage P22} (A:)
Probab=52.54 E-value=17 Score=17.99 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHH
Q ss_conf 9999999999818658899999678543466667
Q gi|254780431|r 6 ERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGK 39 (178)
Q Consensus 6 erve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK 39 (178)
+||..+++ ..|+|..|+|+.+| ||++.|-.-
T Consensus 8 ~rlk~~r~--~~g~t~~ela~~~g-is~~~i~~~ 38 (76)
T 1adr_A 8 ERIRARRK--KLKIRQAALGKMVG-VSNVAISQW 38 (76)
T ss_dssp HHHHHHHH--HHTCCHHHHHHHHT-SCHHHHHHH
T ss_pred HHHHHHHH--HCCCCHHHHHHHHC-CCHHHHHHH
T ss_conf 99999999--93999999999969-799899999
No 172
>>2b0l_A GTP-sensing transcriptional pleiotropic repressor CODY; DNA-binding, nucleotide-binding, transcription regulation, winged HTH motif.; 2.90A {Bacillus subtilis} (A:)
Probab=52.48 E-value=12 Score=19.00 Aligned_cols=24 Identities=42% Similarity=0.512 Sum_probs=18.0
Q ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 65889999967854346666777514
Q gi|254780431|r 19 LSASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 19 ~SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
+.||+||.+.| +||.- |=-+-|..
T Consensus 44 lvASkIADrvg-ITRSV-IVNALRKl 67 (102)
T 2b0l_A 44 LVASKIADRVG-ITRSV-IVNALRKL 67 (102)
T ss_dssp ECHHHHHHHHT-CCHHH-HHHHHHHH
T ss_pred EEEHHHHHHHC-CHHHH-HHHHHHHH
T ss_conf 53086667629-72899-99999876
No 173
>>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda} (A:)
Probab=52.42 E-value=16 Score=18.17 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=20.6
Q ss_pred HHHHHH-HCCCCHHHHHHHHCCCCHHHHH
Q ss_conf 999999-8186588999996785434666
Q gi|254780431|r 10 KLKKFW-SEGLSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 10 ~LkkLW-~eG~SasqIA~~lGgvtRNAVI 37 (178)
.|+++= ..|+|..++|..+| ||+..|-
T Consensus 16 ~l~~~R~~~glsq~~lA~~~g-is~~~i~ 43 (80)
T 3kz3_A 16 IWEKKKNELGLSYESVADKMG-MGQSAVA 43 (80)
T ss_dssp HHHHHHHHHTCCHHHHHHHTT-SCHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHC-CCHHHHH
T ss_conf 999999995998999998788-0497999
No 174
>>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} (A:)
Probab=52.41 E-value=18 Score=17.77 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=20.5
Q ss_pred HHHHHH-HCCCCHHHHHHHHCCCCHHHHH
Q ss_conf 999999-8186588999996785434666
Q gi|254780431|r 10 KLKKFW-SEGLSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 10 ~LkkLW-~eG~SasqIA~~lGgvtRNAVI 37 (178)
.||++= ..|+|..|+|+.+| ||+..|-
T Consensus 5 ~lk~~R~~~gltq~~la~~~g-vs~~~i~ 32 (69)
T 1r69_A 5 RVKSKRIQLGLNQAELAQKVG-TTQQSIE 32 (69)
T ss_dssp HHHHHHHHTTCCHHHHHHHHT-SCHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHCC-CCHHHHH
T ss_conf 999999994999999978509-8999999
No 175
>>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, bacterial persistence, serine kinase, mercury derivative, SAD; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B* (B:)
Probab=51.22 E-value=19 Score=17.58 Aligned_cols=30 Identities=17% Similarity=0.381 Sum_probs=22.7
Q ss_pred HHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHH
Q ss_conf 9999999-818658899999678543466667
Q gi|254780431|r 9 DKLKKFW-SEGLSASQIAVQLGGVTRNAVIGK 39 (178)
Q Consensus 9 e~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK 39 (178)
+.|+++= ..|+|..++|+.+| +|++.|-.-
T Consensus 15 ~~lk~~R~~~g~sq~elA~~~g-is~~~is~~ 45 (88)
T 2wiu_B 15 NAMKLVRQQNGWTQSELAKKIG-IKQATISNF 45 (88)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHT-CCHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHCC-CCHHHHHHH
T ss_conf 9999999985999999978639-989999999
No 176
>>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (D:256-353)
Probab=50.62 E-value=11 Score=19.21 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 8999999999981865889999967
Q gi|254780431|r 5 VERIDKLKKFWSEGLSASQIAVQLG 29 (178)
Q Consensus 5 derve~LkkLW~eG~SasqIA~~lG 29 (178)
++-.+.+++||.+|+|+.+|-.+|-
T Consensus 26 ~~a~~~i~~li~~G~s~~dii~~l~ 50 (98)
T 1sxj_D 26 DEIKKYVNTFMKSGWSAASVVNQLH 50 (98)
T ss_dssp HHHHHHHHHHHHTSCCCTTHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999999999985999999999999
No 177
>>1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} (A:)
Probab=50.48 E-value=10 Score=19.38 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=20.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCHHHHH
Q ss_conf 999999998186588999996785434666
Q gi|254780431|r 8 IDKLKKFWSEGLSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 8 ve~LkkLW~eG~SasqIA~~lGgvtRNAVI 37 (178)
+..|+ ...|+|..|+|+.+| +|+..|=
T Consensus 6 lk~~R--~~~g~tq~~lA~~~g-is~s~is 32 (66)
T 1utx_A 6 LKLIR--EKKKISQSELAALLE-VSRQTIN 32 (66)
T ss_dssp HHHHH--HHTTCCHHHHHHHHT-SCHHHHH
T ss_pred HHHHH--HHCCCCHHHHHHHHC-CCHHHHH
T ss_conf 99999--985999999999759-6999999
No 178
>>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630} (A:1-73)
Probab=50.41 E-value=20 Score=17.45 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=23.3
Q ss_pred HHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9999999-81865889999967854346666777
Q gi|254780431|r 9 DKLKKFW-SEGLSASQIAVQLGGVTRNAVIGKLH 41 (178)
Q Consensus 9 e~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK~h 41 (178)
+.|++|= ..|+|..|+|+.+| +|++.|-.-.+
T Consensus 15 ~~ik~lr~~~~lsq~elA~~lg-is~~~i~~~e~ 47 (73)
T 3ivp_A 15 LAIKEARKKQGLTREQVGAXIE-IDPRYLTNIEN 47 (73)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHT-CCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHH
T ss_conf 9999999983999999976539-89749998962
No 179
>>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} (A:)
Probab=49.95 E-value=7.4 Score=20.30 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=22.4
Q ss_pred HCCCCHHHHHHHHCCCCH---HHHHHHHHHHCCCCC
Q ss_conf 818658899999678543---466667775145544
Q gi|254780431|r 16 SEGLSASQIAVQLGGVTR---NAVIGKLHRLFLSNR 48 (178)
Q Consensus 16 ~eG~SasqIA~~lGgvtR---NAVIGK~hRLgLs~R 48 (178)
.+|.+|-+||++|| +++ |.++=+..|-|.-.+
T Consensus 27 ~~~~tA~~lAk~Lg-~~Kk~VNr~LY~L~~~G~v~~ 61 (75)
T 1sfu_A 27 NDYTTAISLSNRLK-INKKKINQQLYKLQKEDTVKM 61 (75)
T ss_dssp TCEECHHHHHHHTT-CCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHHC-CHHHHHHHHHHHHHHCCEEEE
T ss_conf 44221999998863-008788899999986896544
No 180
>>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} (H:376-438)
Probab=49.27 E-value=17 Score=18.00 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=21.1
Q ss_pred HHHHHHHH----HCCCCHHHHHHHHCCCCHHHH
Q ss_conf 99999999----818658899999678543466
Q gi|254780431|r 8 IDKLKKFW----SEGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 8 ve~LkkLW----~eG~SasqIA~~lGgvtRNAV 36 (178)
-+.|+.-+ .+++|-.+||+.|| |||--|
T Consensus 6 r~Ii~~r~Gl~~~~~~Tl~eIa~~lg-iSrerV 37 (63)
T 1l9z_H 6 AMVLKLRKGLIDGREHTLEEVGAYFG-VTRERI 37 (63)
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHC-CCHHHH
T ss_conf 99999706778998512999999989-699999
No 181
>>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656} (A:)
Probab=49.09 E-value=15 Score=18.27 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=22.9
Q ss_pred HHHHHHH-HHCCCCHHHHHHHHCCCCHHHHHH
Q ss_conf 9999999-981865889999967854346666
Q gi|254780431|r 8 IDKLKKF-WSEGLSASQIAVQLGGVTRNAVIG 38 (178)
Q Consensus 8 ve~LkkL-W~eG~SasqIA~~lGgvtRNAVIG 38 (178)
-+.|+++ ...|+|..++|+.+| |++..|-.
T Consensus 11 g~~lk~~r~~~g~sq~~lA~~~g-is~~tis~ 41 (94)
T 2kpj_A 11 SENLNSYIAKSEKTQLEIAKSIG-VSPQTFNT 41 (94)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHT-CCHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHH-HCCHHHHH
T ss_conf 99999999990999999999885-30056788
No 182
>>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; 1.70A {Rhodococcus SP} (A:)
Probab=48.36 E-value=21 Score=17.30 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=20.7
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCHHHHHHH
Q ss_conf 999999818658899999678543466667
Q gi|254780431|r 10 KLKKFWSEGLSASQIAVQLGGVTRNAVIGK 39 (178)
Q Consensus 10 ~LkkLW~eG~SasqIA~~lGgvtRNAVIGK 39 (178)
.|+++. .|+|..+.|+.+| ++++.|-.-
T Consensus 20 ~i~r~r-~g~tq~~LA~~~g-is~~~is~i 47 (86)
T 2ofy_A 20 LLRSAR-GDXSXVTVAFDAG-ISVETLRKI 47 (86)
T ss_dssp HHHHHH-TTSCHHHHHHHHT-CCHHHHHHH
T ss_pred HHHHHH-HCCCHHHHHHHHC-CCHHHHHHH
T ss_conf 999999-8089999999970-789999999
No 183
>>2ras_A Transcriptional regulator, TETR family; YP_495839.1, predicted transcriptional regulator of TETR/ACRR family; 1.80A {Novosphingobium aromaticivorans DSM12444} (A:1-66)
Probab=48.33 E-value=20 Score=17.50 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=21.1
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCHHHH
Q ss_conf 99999999818658899999678543466
Q gi|254780431|r 8 IDKLKKFWSEGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 8 ve~LkkLW~eG~SasqIA~~lGgvtRNAV 36 (178)
++.+.+.=-+++|-.+||+++| ||+.++
T Consensus 21 ~~l~~~~G~~~~s~~~Ia~~~g-vs~~~i 48 (66)
T 2ras_A 21 QAIVEERGGAGLTLSELAARAG-ISQANL 48 (66)
T ss_dssp HHHHHHHTSSCCCHHHHHHHHT-SCHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHC-CCHHHH
T ss_conf 9999975902067999999868-487568
No 184
>>2rn7_A IS629 ORFA; helix, all alpha, unknown function; NMR {Shigella flexneri} (A:)
Probab=48.17 E-value=16 Score=18.06 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=21.6
Q ss_pred HHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9818658899999678543466667775
Q gi|254780431|r 15 WSEGLSASQIAVQLGGVTRNAVIGKLHR 42 (178)
Q Consensus 15 W~eG~SasqIA~~lGgvtRNAVIGK~hR 42 (178)
+.+|.|.++||++|| |+.|.+-.=+..
T Consensus 27 ~~~g~sv~~vA~~lg-is~~~l~~W~k~ 53 (108)
T 2rn7_A 27 DSQWATICSIAPKIG-CTPETLRVWVRQ 53 (108)
T ss_dssp CCHHHHHHHHHHHHT-SCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHCCC-CCHHHHHHHHHH
T ss_conf 666653999975357-798996159987
No 185
>>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.83A {Rhodopseudomonas palustris CGA009} (A:)
Probab=47.67 E-value=22 Score=17.14 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=21.4
Q ss_pred HHHHHHH-HCCCCHHHHHHHHCCCCHHHHH
Q ss_conf 9999999-8186588999996785434666
Q gi|254780431|r 9 DKLKKFW-SEGLSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 9 e~LkkLW-~eG~SasqIA~~lGgvtRNAVI 37 (178)
+.|++|= ..|+|..++|+++| +|++.|-
T Consensus 43 ~~l~~~R~~~glsq~~lA~~~G-is~s~is 71 (120)
T 2o38_A 43 YALNAVIDRARLSQAAAAARLG-INQPKVS 71 (120)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHT-CCHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHC-CCHHHHH
T ss_conf 9999999986985765667628-8847768
No 186
>>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1} (A:)
Probab=46.96 E-value=23 Score=17.07 Aligned_cols=29 Identities=17% Similarity=0.347 Sum_probs=22.5
Q ss_pred HHHHHHHH-HCCCCHHHHHHHHCCCCHHHHH
Q ss_conf 99999999-8186588999996785434666
Q gi|254780431|r 8 IDKLKKFW-SEGLSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 8 ve~LkkLW-~eG~SasqIA~~lGgvtRNAVI 37 (178)
.+.|+.+= ..|+|..|+|+.+| |+++.|-
T Consensus 9 ~~~i~~~r~~~~~tq~~la~~~g-is~~~i~ 38 (78)
T 3b7h_A 9 SEHLMELITQQNLTINRVATLAG-LNQSTVN 38 (78)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHT-CCHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHC-CCHHHHH
T ss_conf 99999999985999999999979-8999999
No 187
>>2a6c_A Helix-turn-helix motif; NP_841403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: CIT; 1.90A {Nitrosomonas europaea} (A:)
Probab=46.33 E-value=22 Score=17.18 Aligned_cols=29 Identities=31% Similarity=0.328 Sum_probs=22.2
Q ss_pred HHHHHHH-HCCCCHHHHHHHHCCCCHHHHHH
Q ss_conf 9999999-81865889999967854346666
Q gi|254780431|r 9 DKLKKFW-SEGLSASQIAVQLGGVTRNAVIG 38 (178)
Q Consensus 9 e~LkkLW-~eG~SasqIA~~lGgvtRNAVIG 38 (178)
+.|+.+= ..|+|..+.|+.+| ||+..|-.
T Consensus 21 ~~lk~~r~~~gltq~elA~~~G-is~~~is~ 50 (83)
T 2a6c_A 21 IVLQEHLRNSGLTQFKAAELLG-VTQPRVSD 50 (83)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHT-SCHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHH-CCHHHHHH
T ss_conf 9999999996998899999985-57635558
No 188
>>3d1k_B Hemoglobin subunit beta-1/2; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} (B:)
Probab=45.87 E-value=24 Score=16.96 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 97778999999999981865889999967
Q gi|254780431|r 1 MVWTVERIDKLKKFWSEGLSASQIAVQLG 29 (178)
Q Consensus 1 MsWTderve~LkkLW~eG~SasqIA~~lG 29 (178)
|+.|++-++.+++-|.. +.+.+++..+-
T Consensus 1 m~Lt~~e~~~I~~sW~~-v~~~~~g~~~~ 28 (146)
T 3d1k_B 1 VEWTDKERSIISDIFSH-MDYDDIGPKAL 28 (146)
T ss_dssp CCCCHHHHHHHHHHHHH-CCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_conf 98999999999999971-79767999999
No 189
>>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} (A:48-79)
Probab=45.70 E-value=11 Score=19.30 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHCCCCCC
Q ss_conf 68887716888887057751
Q gi|254780431|r 150 CNDSPYCDYHKKLAYQRVND 169 (178)
Q Consensus 150 ~~g~PYC~~H~~iAYQP~~~ 169 (178)
+++.=||+.|+.--|+|..+
T Consensus 12 ve~~lyCE~HAr~r~~ppes 31 (32)
T 1x62_A 12 VEDQIYCEKHARERVSGPSS 31 (32)
T ss_dssp SSSCEECHHHHHHHHSSCCC
T ss_pred ECCEEECHHHHHHHCCCCCC
T ss_conf 89926257889977289778
No 190
>>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=45.48 E-value=24 Score=16.93 Aligned_cols=44 Identities=16% Similarity=0.139 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHCC-----CCHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 77789999999999818-----658899999678543466667775145
Q gi|254780431|r 2 VWTVERIDKLKKFWSEG-----LSASQIAVQLGGVTRNAVIGKLHRLFL 45 (178)
Q Consensus 2 sWTderve~LkkLW~eG-----~SasqIA~~lGgvtRNAVIGK~hRLgL 45 (178)
.||.|--++|.++=.+= ..=+.||..|+|=|.+.|.-.-+.|.-
T Consensus 20 ~WT~eEd~~L~~~v~~~g~~~~~~W~~Ia~~l~~Rt~~q~r~r~~~L~~ 68 (73)
T 2cqr_A 20 PWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 9699999999999998083357678999989599989999999999952
No 191
>>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} (A:19-82)
Probab=43.86 E-value=26 Score=16.77 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=25.7
Q ss_pred HHCCCCHHHHHHHHCCCCHHHHHHHHH---HHCCCCCC
Q ss_conf 981865889999967854346666777---51455445
Q gi|254780431|r 15 WSEGLSASQIAVQLGGVTRNAVIGKLH---RLFLSNRV 49 (178)
Q Consensus 15 W~eG~SasqIA~~lGgvtRNAVIGK~h---RLgLs~R~ 49 (178)
=.+++.-+||+++|| +|--.|=-++. |+||-.|.
T Consensus 13 ek~~m~i~eI~keLg-lSeR~VRe~v~~L~r~GllkRe 49 (64)
T 1sfx_A 13 ERGGXRVSEIARELD-LSARFVRDRLKVLLKRGFVRRE 49 (64)
T ss_dssp HHCCBCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCCHHHHHHHHC-CCCCHHHHHHHHHHHCCCEEEE
T ss_conf 048887999999975-6701899999999959997987
No 192
>>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} (A:50-100)
Probab=43.48 E-value=22 Score=17.22 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=25.2
Q ss_pred CCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCC
Q ss_conf 6588999996785434666677751---455445
Q gi|254780431|r 19 LSASQIAVQLGGVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 19 ~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~ 49 (178)
++.++||+.|| +++.+|=.-+.|| ||--|.
T Consensus 2 it~~~la~~l~-~~~~t~s~~i~~Le~~gli~r~ 34 (51)
T 3bro_A 2 VLQRDLESEFS-IKSSTATVLLQRXEIKKLLYRK 34 (51)
T ss_dssp CBHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHC
T ss_conf 89999998877-7823699999999888887750
No 193
>>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A (A:1-119)
Probab=43.39 E-value=23 Score=17.09 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHH-CCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCCCC
Q ss_conf 7899999999998-186588999996785434666677751---4554455
Q gi|254780431|r 4 TVERIDKLKKFWS-EGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNRVK 50 (178)
Q Consensus 4 Tderve~LkkLW~-eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R~~ 50 (178)
|-.....|.-||. +|++.++||+.++ +++.+|---+.+| ||--|..
T Consensus 35 t~~q~~iL~~l~~~~~~t~~~la~~~~-i~~~~vs~~i~~L~~~gli~r~~ 84 (119)
T 3hsr_A 35 TYTGYIVLMAIENDEKLNIKKLGERVF-LDSGTLTPLLKKLEKKDYVVRTR 84 (119)
T ss_dssp CHHHHHHHHHSCTTCEEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 999999999998779989999999989-68868999999998179569854
No 194
>>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} (A:1-81)
Probab=43.09 E-value=26 Score=16.69 Aligned_cols=44 Identities=25% Similarity=0.280 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHC-C-CCHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 7778999999999981-8-658899999678543466667775145
Q gi|254780431|r 2 VWTVERIDKLKKFWSE-G-LSASQIAVQLGGVTRNAVIGKLHRLFL 45 (178)
Q Consensus 2 sWTderve~LkkLW~e-G-~SasqIA~~lGgvtRNAVIGK~hRLgL 45 (178)
.||+|-.++|..+-.+ | ..-++|+..|++=|.+.|.-..++..-
T Consensus 6 ~WT~eED~~L~~~v~~~g~~~W~~I~~~~~~Rt~~q~~~r~~~~l~ 51 (81)
T 1gv2_A 6 PWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 51 (81)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf 9999999999999999888989999988379998999999998038
No 195
>>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, protein structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A (A:24-107)
Probab=42.87 E-value=27 Score=16.67 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999999999818658899999678543466667775
Q gi|254780431|r 6 ERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHR 42 (178)
Q Consensus 6 erve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hR 42 (178)
.|++..+.| .+|.|..+|+.++| +| -|.|..+.|
T Consensus 24 qR~~Va~~L-~~g~syreI~~~tG-aS-~ATIsRvsr 57 (84)
T 3frw_A 24 QRFEVAKXL-TDKRTYLDISEKTG-AS-TATISRVNR 57 (84)
T ss_dssp HHHHHHHHH-HTTCCHHHHHHHHC-CC-HHHHHHHHH
T ss_pred HHHHHHHHH-HCCCCHHHHHHHHC-CC-HHHHHHHHH
T ss_conf 999999998-86999999999969-87-575899999
No 196
>>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} (A:)
Probab=42.75 E-value=27 Score=16.66 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHC-C-CCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 7778999999999981-8-658899999678543466667775
Q gi|254780431|r 2 VWTVERIDKLKKFWSE-G-LSASQIAVQLGGVTRNAVIGKLHR 42 (178)
Q Consensus 2 sWTderve~LkkLW~e-G-~SasqIA~~lGgvtRNAVIGK~hR 42 (178)
.||.|--++|.++-.+ | ..=++||+.|++=|.+.+--.-++
T Consensus 10 ~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 52 (60)
T 2d9a_A 10 KWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLR 52 (60)
T ss_dssp CCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9899999999999999788989999988579999999999999
No 197
>>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, gene regulation; 2.70A {Mycobacterium tuberculosis} (A:)
Probab=41.99 E-value=23 Score=17.05 Aligned_cols=48 Identities=19% Similarity=0.097 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHC--CCCHHHHHHHH---C-CCCHHHHHHHHHHH---CCCCCC
Q ss_conf 7778999999999981--86588999996---7-85434666677751---455445
Q gi|254780431|r 2 VWTVERIDKLKKFWSE--GLSASQIAVQL---G-GVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 2 sWTderve~LkkLW~e--G~SasqIA~~l---G-gvtRNAVIGK~hRL---gLs~R~ 49 (178)
-||..|...|.-|+.. .+|+.+|...| | .+++..|=--...| ||-.+.
T Consensus 8 r~T~qR~~Il~~l~~~~~~~t~~ei~~~l~~~~~~i~~aTVYR~L~~L~~~gli~~~ 64 (131)
T 2o03_A 8 RSTRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEEE
T ss_conf 709999999999980899999999999998628876828899999999873356776
No 198
>>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens} (A:)
Probab=41.58 E-value=18 Score=17.82 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=22.2
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCHHHH
Q ss_conf 999999818658899999678543466
Q gi|254780431|r 10 KLKKFWSEGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 10 ~LkkLW~eG~SasqIA~~lGgvtRNAV 36 (178)
...+|-++|+|.-.|-+.|| ++||-|
T Consensus 7 eI~~Lm~~GYs~~~v~rAL~-Ia~Nni 32 (46)
T 2oo9_A 7 EIENLXSQGYSYQDIQKALV-IAQNNI 32 (46)
T ss_dssp HHHHHHHTTBCHHHHHHHHH-HTTTCH
T ss_pred HHHHHHHCCCCHHHHHHHHH-HHHCCH
T ss_conf 99999986776999999999-987109
No 199
>>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3} (A:)
Probab=41.58 E-value=28 Score=16.54 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=20.8
Q ss_pred HHHHHHH-HCCCCHHHHHHHHC-CCCHHHH
Q ss_conf 9999999-81865889999967-8543466
Q gi|254780431|r 9 DKLKKFW-SEGLSASQIAVQLG-GVTRNAV 36 (178)
Q Consensus 9 e~LkkLW-~eG~SasqIA~~lG-gvtRNAV 36 (178)
+.||++= ..|+|..+.|+.+| .||++.|
T Consensus 11 ~~ik~~R~~~gltq~~lA~~~G~~vs~~~i 40 (71)
T 2ewt_A 11 AKLRAIRTQQGLSLHGVEEKSQGRWKAVVV 40 (71)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTTTSSCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCCCHHHH
T ss_conf 999999998626389999997787389999
No 200
>>2w72_B Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7w_B* 1qi8_B* 1j7y_B* 1dxu_B* 1a0u_B* 1a0z_B* 1gli_B* 1j7s_B* 1o1l_B* 1o1n_B* 1y0t_B* 1y0w_B* 1o1o_B* 1ye2_B* 1y35_B* 1y22_B* 1ye0_B* 1dxt_B* 1y5f_B* 1ird_B* ... (B:)
Probab=41.50 E-value=28 Score=16.53 Aligned_cols=28 Identities=14% Similarity=0.304 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 97778999999999981865889999967
Q gi|254780431|r 1 MVWTVERIDKLKKFWSEGLSASQIAVQLG 29 (178)
Q Consensus 1 MsWTderve~LkkLW~eG~SasqIA~~lG 29 (178)
|+.|++-++.+++-|.. +.+-+|+..+-
T Consensus 1 m~LT~~q~~~i~~sW~~-v~~~~~g~~~~ 28 (146)
T 2w72_B 1 MHLTPEEKSAVTALWGK-VNVDEVGGEAY 28 (146)
T ss_dssp CCCCHHHHHHHHHHHHT-CCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-CCCHHHHHHHH
T ss_conf 99998999999999984-28057799999
No 201
>>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343} (A:)
Probab=41.47 E-value=27 Score=16.65 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=19.7
Q ss_pred HHHCCCCHHHHHHHHCCCCHHHHHH
Q ss_conf 9981865889999967854346666
Q gi|254780431|r 14 FWSEGLSASQIAVQLGGVTRNAVIG 38 (178)
Q Consensus 14 LW~eG~SasqIA~~lGgvtRNAVIG 38 (178)
+...|+|..|+|+.+| ||++.+-.
T Consensus 19 R~~~gltq~~lA~~~g-is~~~is~ 42 (76)
T 3bs3_A 19 LAEKQRTNRWLAEQXG-KSENTISR 42 (76)
T ss_dssp HHHTTCCHHHHHHHHT-CCHHHHHH
T ss_pred HHHCCCCHHHHHHHHC-CCHHHHHH
T ss_conf 9995998999976646-22588888
No 202
>>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli} (A:1-96)
Probab=40.91 E-value=19 Score=17.68 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=22.4
Q ss_pred HHHHH-HCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99999-81865889999967854346666777
Q gi|254780431|r 11 LKKFW-SEGLSASQIAVQLGGVTRNAVIGKLH 41 (178)
Q Consensus 11 LkkLW-~eG~SasqIA~~lGgvtRNAVIGK~h 41 (178)
||.+= ..|+|..++|+.+| ||++.|-.-.+
T Consensus 16 lk~~R~~~gltq~~lA~~~g-is~~~is~~e~ 46 (96)
T 2eby_A 16 LYEYLEPLDLKINELAELLH-VHRNSVSALIN 46 (96)
T ss_dssp HHHTTTTTTCCHHHHHHHHT-SCHHHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHH
T ss_conf 99987767999999999878-89999999993
No 203
>>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=39.54 E-value=30 Score=16.34 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=20.6
Q ss_pred HHHHHHH-HCCCCHHHHHHHHCCCCHHHHH
Q ss_conf 9999999-8186588999996785434666
Q gi|254780431|r 9 DKLKKFW-SEGLSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 9 e~LkkLW-~eG~SasqIA~~lGgvtRNAVI 37 (178)
+.||.+= ..|+|..++|+.+| |++..|-
T Consensus 16 ~~ik~~R~~~~ltq~~lA~~~g-is~~~is 44 (91)
T 1x57_A 16 KVIQQGRQSKGLTQKDLATKIN-EKPQVIA 44 (91)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHT-SCHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHC-CCHHHHH
T ss_conf 9999999981886999999809-9999999
No 204
>>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482} (A:1-99)
Probab=38.97 E-value=21 Score=17.36 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=24.9
Q ss_pred HHHHHH--HCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf 999999--818658899999678543466667775145544
Q gi|254780431|r 10 KLKKFW--SEGLSASQIAVQLGGVTRNAVIGKLHRLFLSNR 48 (178)
Q Consensus 10 ~LkkLW--~eG~SasqIA~~lGgvtRNAVIGK~hRLgLs~R 48 (178)
.|..|= .+|+|..||+...| +|+-||- -.--.|||.+
T Consensus 40 IL~~Ld~~~~G~t~~ei~~~t~-lS~Yav~-vLLdm~LS~g 78 (99)
T 3dp7_A 40 IFQLLSGKREGYTLQEISGRTG-LTRYAAQ-VLLEASLTIG 78 (99)
T ss_dssp HHHHHHTCTTCBCHHHHHHHHT-CCHHHHH-HHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHHHHC-CCHHHHH-HHHHHHHHCC
T ss_conf 7899842999989999998729-6989999-9999998488
No 205
>>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=38.74 E-value=31 Score=16.26 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHC-C-CCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 7778999999999981-8-658899999678543466667775
Q gi|254780431|r 2 VWTVERIDKLKKFWSE-G-LSASQIAVQLGGVTRNAVIGKLHR 42 (178)
Q Consensus 2 sWTderve~LkkLW~e-G-~SasqIA~~lGgvtRNAVIGK~hR 42 (178)
.||.|-.++|.++=.+ | ..=++||..||+=|.+.+.-.-+.
T Consensus 10 ~WT~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~Qc~~r~~~ 52 (60)
T 1x41_A 10 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK 52 (60)
T ss_dssp SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9799999999999999888879999989399999999999999
No 206
>>3bom_B Hemoglobin subunit beta-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_B* 3bcq_B* 1spg_B* (B:)
Probab=38.66 E-value=31 Score=16.25 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 97778999999999981865889999967
Q gi|254780431|r 1 MVWTVERIDKLKKFWSEGLSASQIAVQLG 29 (178)
Q Consensus 1 MsWTderve~LkkLW~eG~SasqIA~~lG 29 (178)
|++|++-++.+++.|.. +...+++..+-
T Consensus 1 m~Lt~~q~~~I~~sW~~-v~~~~~g~~~~ 28 (147)
T 3bom_B 1 VDWTDAERSAIVGLWGK-ISVDEIGPQAL 28 (147)
T ss_dssp CCCCHHHHHHHHHHHHH-SCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_conf 98989999999999825-68468899999
No 207
>>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix- turn-helix, UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis} (A:1-77)
Probab=38.11 E-value=18 Score=17.72 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=24.0
Q ss_pred HHHHHHH---HHCC--C-CHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999999---9818--6-588999996785434666677751
Q gi|254780431|r 8 IDKLKKF---WSEG--L-SASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 8 ve~LkkL---W~eG--~-SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
.+.|+.. |..| + |-.+||++|| ||||.|.-=...|
T Consensus 20 ~~~i~~~Ig~~~~G~~lPser~La~~~~-VSr~tvr~Al~~L 60 (77)
T 3f8m_A 20 RAELDRMLDGMRIGDPFPAEREIAEQFE-VARETVRQALREL 60 (77)
T ss_dssp HHHHHHHHHHCCTTCBCCCHHHHHHHTT-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf 9999999836999786846999999979-6999999999999
No 208
>>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* (A:)
Probab=38.06 E-value=20 Score=17.46 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCH-----------HHHHHHHC--CCCHHHH
Q ss_conf 977789999999999818658-----------89999967--8543466
Q gi|254780431|r 1 MVWTVERIDKLKKFWSEGLSA-----------SQIAVQLG--GVTRNAV 36 (178)
Q Consensus 1 MsWTderve~LkkLW~eG~Sa-----------sqIA~~lG--gvtRNAV 36 (178)
+.||++-+..|=.+|.+-... .+|+.+|- |+.|++.
T Consensus 5 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~w~~ia~~l~~~G~~rs~~ 53 (86)
T 2ebi_A 5 ETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPD 53 (86)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHH
T ss_conf 5599999999999999999998726633899999999998728999899
No 209
>>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=37.88 E-value=32 Score=16.17 Aligned_cols=34 Identities=26% Similarity=0.584 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHCCC---------CHHHHHHHHCCCCHHHH
Q ss_conf 777899999999998186---------58899999678543466
Q gi|254780431|r 2 VWTVERIDKLKKFWSEGL---------SASQIAVQLGGVTRNAV 36 (178)
Q Consensus 2 sWTderve~LkkLW~eG~---------SasqIA~~lGgvtRNAV 36 (178)
.+|++-++.|.++|.+.. .-.+||.+|| ++.-.|
T Consensus 14 ~~t~~q~~~L~~~f~~~~~~~p~P~~~~~~~La~~~g-l~~~qV 56 (80)
T 2da4_A 14 QFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELN-VDCEIV 56 (80)
T ss_dssp CCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHT-CCHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC-CCHHHH
T ss_conf 8999999999999998467788979999999999988-199999
No 210
>>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} (A:)
Probab=37.56 E-value=32 Score=16.14 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 186588999996785434666677751
Q gi|254780431|r 17 EGLSASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 17 eG~SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
-|+|.++||+.+|+-+...|+=-+.|+
T Consensus 45 ~~~sl~~Ig~~fg~rdhSTV~~a~~kv 71 (94)
T 1j1v_A 45 TNHSLPEIGDAFGGRDHTTVLHACRKI 71 (94)
T ss_dssp SCCCHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 289999999996899840999999999
No 211
>>1xc5_A Nuclear receptor corepressor 2; four-helix structure, three-helix triangle, transcription corepressor; NMR {Homo sapiens} (A:)
Probab=37.44 E-value=24 Score=17.01 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHH-HHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 777899999999-99818658899999678543466667775145
Q gi|254780431|r 2 VWTVERIDKLKK-FWSEGLSASQIAVQLGGVTRNAVIGKLHRLFL 45 (178)
Q Consensus 2 sWTderve~Lkk-LW~eG~SasqIA~~lGgvtRNAVIGK~hRLgL 45 (178)
.||+|-.++|.. +=.=|--=.+||..|++=|.+.|+-.-.++-.
T Consensus 22 ~Wt~eE~~~f~~~~~~~Gk~w~~Ia~~l~~rt~~q~~~~y~~~~k 66 (71)
T 1xc5_A 22 MWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKK 66 (71)
T ss_dssp CCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
T ss_conf 988999999999999992829999652799889999999999867
No 212
>>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A (A:)
Probab=37.17 E-value=23 Score=17.07 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=21.9
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCHHHH
Q ss_conf 999999818658899999678543466
Q gi|254780431|r 10 KLKKFWSEGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 10 ~LkkLW~eG~SasqIA~~lGgvtRNAV 36 (178)
...+|-++|+|.-.|-+.|+ +++|-|
T Consensus 14 eI~~Lm~~GYs~~dv~rAL~-Ia~Nni 39 (52)
T 2ooa_A 14 KIAKLXGEGYAFEEVKRALE-IAQNNV 39 (52)
T ss_dssp HHHHHHHTTCCHHHHHHHHH-HTTTCH
T ss_pred HHHHHHHCCCCHHHHHHHHH-HHHCCH
T ss_conf 99999985543999999999-986219
No 213
>>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} (A:)
Probab=37.06 E-value=33 Score=16.09 Aligned_cols=38 Identities=32% Similarity=0.274 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHHC-C-CCHHHHHHHHCCCCHHHHHHH
Q ss_conf 7778999999999981-8-658899999678543466667
Q gi|254780431|r 2 VWTVERIDKLKKFWSE-G-LSASQIAVQLGGVTRNAVIGK 39 (178)
Q Consensus 2 sWTderve~LkkLW~e-G-~SasqIA~~lGgvtRNAVIGK 39 (178)
.||.|--++|.++-.+ | ..=++||..|+|=|.+.+--+
T Consensus 5 ~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~R 44 (52)
T 1guu_A 5 RWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHR 44 (52)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHH
T ss_conf 9999999999999999787889999988588999999999
No 214
>>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli BL21} (A:)
Probab=36.92 E-value=33 Score=16.07 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHH-CC--CCHHHHHHHHC----CCCHHHHH
Q ss_conf 777899999999998-18--65889999967----85434666
Q gi|254780431|r 2 VWTVERIDKLKKFWS-EG--LSASQIAVQLG----GVTRNAVI 37 (178)
Q Consensus 2 sWTderve~LkkLW~-eG--~SasqIA~~lG----gvtRNAVI 37 (178)
-+|..|...|.-|+. +| +|+.+|...|- .|++..|=
T Consensus 14 r~T~~R~~Il~~l~~~~~~h~s~~~i~~~l~~~~~~is~aTVY 56 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVY 56 (83)
T ss_dssp CCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHH
T ss_conf 9699999999999948999988999999988508998889999
No 215
>>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} (A:234-327)
Probab=36.82 E-value=33 Score=16.06 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=22.3
Q ss_pred HHHHHHHHHH-HHCCCCHHHHHHHHCCCCHH
Q ss_conf 8999999999-98186588999996785434
Q gi|254780431|r 5 VERIDKLKKF-WSEGLSASQIAVQLGGVTRN 34 (178)
Q Consensus 5 derve~LkkL-W~eG~SasqIA~~lGgvtRN 34 (178)
++-.+.+.+| |.+|+|..+|-.+|-.+-.|
T Consensus 19 ~~a~~~i~~l~~~~G~s~~dIl~~l~~~v~~ 49 (94)
T 1iqp_A 19 LKAREKLREILLKQGLSGEDVLVQMHKEVFN 49 (94)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 9999999999998699999999999999976
No 216
>>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (B:231-323)
Probab=36.30 E-value=25 Score=16.88 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=22.0
Q ss_pred HHHHHHHHH-HHHCCCCHHHHHHHHCCCC
Q ss_conf 899999999-9981865889999967854
Q gi|254780431|r 5 VERIDKLKK-FWSEGLSASQIAVQLGGVT 32 (178)
Q Consensus 5 derve~Lkk-LW~eG~SasqIA~~lGgvt 32 (178)
++-.+.+.+ +|.+|+|+.+|-.+|-.+-
T Consensus 16 ~~a~~~i~~ll~~~G~s~~dIi~~l~~~v 44 (93)
T 1sxj_B 16 EDSIQILRTDLWKKGYSSIDIVTTSFRVT 44 (93)
T ss_dssp HHHHHHHHHTTTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999999986999999999999999
No 217
>>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} (A:)
Probab=35.73 E-value=34 Score=15.95 Aligned_cols=38 Identities=32% Similarity=0.295 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHHC-CC-CHHHHHHHHCCCCHHHHHHH
Q ss_conf 7778999999999981-86-58899999678543466667
Q gi|254780431|r 2 VWTVERIDKLKKFWSE-GL-SASQIAVQLGGVTRNAVIGK 39 (178)
Q Consensus 2 sWTderve~LkkLW~e-G~-SasqIA~~lGgvtRNAVIGK 39 (178)
.||.|--++|.++=.+ |. .=++||..+|..+|++.==+
T Consensus 13 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~~Rt~~Qcr 52 (64)
T 1vf9_A 13 KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIK 52 (64)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHHTTCCTTTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHH
T ss_conf 9799999999999998489989981072579995999999
No 218
>>3c7j_A Transcriptional regulator, GNTR family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 2.10A {Pseudomonas syringae PV} (A:1-91)
Probab=35.70 E-value=34 Score=15.95 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 186588999996785434666677751
Q gi|254780431|r 17 EGLSASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 17 eG~SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
+=++-.+||++|| |||+.|--=..+|
T Consensus 48 ~~l~e~~La~~~g-vSr~tvr~Al~~L 73 (91)
T 3c7j_A 48 TALRQQELATLFG-VSRXPVREALRQL 73 (91)
T ss_dssp CBCCHHHHHHHHT-SCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf 9638999999988-6954999999999
No 219
>>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} (A:)
Probab=35.45 E-value=34 Score=15.92 Aligned_cols=39 Identities=31% Similarity=0.265 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHC-C-CCHHHHHHHHCCCCHHHHHHH
Q ss_conf 97778999999999981-8-658899999678543466667
Q gi|254780431|r 1 MVWTVERIDKLKKFWSE-G-LSASQIAVQLGGVTRNAVIGK 39 (178)
Q Consensus 1 MsWTderve~LkkLW~e-G-~SasqIA~~lGgvtRNAVIGK 39 (178)
..||.|--++|+++=.+ | ..=+.||+.++...|+++-=+
T Consensus 3 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~~Rt~~qcr 43 (55)
T 1w0u_A 3 QKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIK 43 (55)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHH
T ss_conf 99899999999999999489839997634489996999999
No 220
>>1v4x_B Hemoglobin beta chain; oxygen transport, heme, respiratory protein, erythrocyte, ROOT effect, SWIM bladder, oxygen storage/transport complex; HET: HEM; 1.60A {Thunnus thynnus} (B:)
Probab=35.44 E-value=34 Score=15.92 Aligned_cols=28 Identities=14% Similarity=0.279 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 97778999999999981865889999967
Q gi|254780431|r 1 MVWTVERIDKLKKFWSEGLSASQIAVQLG 29 (178)
Q Consensus 1 MsWTderve~LkkLW~eG~SasqIA~~lG 29 (178)
|++|++-++.+++-|.. +.+.+++..+-
T Consensus 1 m~Lt~~q~~~I~~sW~~-v~~~~~g~~~~ 28 (146)
T 1v4x_B 1 VEWTQQERSIIAGIFAN-LNYEDIGPKAL 28 (146)
T ss_dssp CCCCHHHHHHHHHHHHH-CCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_conf 98999999999999862-58757999999
No 221
>>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.09A {Listeria innocua} (A:1-76)
Probab=34.93 E-value=32 Score=16.16 Aligned_cols=30 Identities=10% Similarity=0.201 Sum_probs=23.9
Q ss_pred HHHCC--C-CHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 99818--6-5889999967854346666777514
Q gi|254780431|r 14 FWSEG--L-SASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 14 LW~eG--~-SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
-|..| + |-.++|++|| |||+.|--=.++|-
T Consensus 26 ~~~~g~~lpse~~La~~~~-vSr~tvr~al~~L~ 58 (76)
T 3edp_A 26 EYKTGXLXPNETALQEIYS-SSRTTIRRAVDLLV 58 (76)
T ss_dssp SSCCCC--CCHHHHHHHTT-CCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf 9999299928999999979-49999999999999
No 222
>>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=34.44 E-value=36 Score=15.82 Aligned_cols=42 Identities=19% Similarity=0.122 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHH-HHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 777899999999-998186588999996785434666677751
Q gi|254780431|r 2 VWTVERIDKLKK-FWSEGLSASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 2 sWTderve~Lkk-LW~eG~SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
.||+|-..+|.+ +=.-|--=..||+.|++=|.+.|+-.-+++
T Consensus 14 ~WT~eE~~~f~~~~~~~G~~w~~Ia~~i~~Rt~~q~~~~y~~~ 56 (61)
T 2eqr_A 14 VWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp SCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 9599999999999999838499999876997999999999987
No 223
>>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=34.44 E-value=25 Score=16.80 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=21.7
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCHHHH
Q ss_conf 999999818658899999678543466
Q gi|254780431|r 10 KLKKFWSEGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 10 ~LkkLW~eG~SasqIA~~lGgvtRNAV 36 (178)
...+|-++|+|--.|-+.|| +++|-|
T Consensus 12 eI~~Lm~~GYs~~~v~rAL~-Ia~Nni 37 (53)
T 2d9s_A 12 EIERLMSQGYSYQDIQKALV-IAHNNI 37 (53)
T ss_dssp HHHHHHHHTCCHHHHHHHHH-HTTTCH
T ss_pred HHHHHHHCCCCHHHHHHHHH-HHHCCH
T ss_conf 99999985533999999999-986219
No 224
>>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens} (A:)
Probab=34.29 E-value=21 Score=17.39 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.4
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCHHHH
Q ss_conf 999999818658899999678543466
Q gi|254780431|r 10 KLKKFWSEGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 10 ~LkkLW~eG~SasqIA~~lGgvtRNAV 36 (178)
...+|-++|+|--.|-+.|| +++|-|
T Consensus 10 eI~~Lm~~GYs~~~V~rAL~-Ia~Nnv 35 (56)
T 2juj_A 10 EIENLMSQGYSYQDIQKALV-IAQNNI 35 (56)
T ss_dssp HHHHHHTTTCCHHHHHHHHH-HTTTCS
T ss_pred HHHHHHHCCCCHHHHHHHHH-HHHCCH
T ss_conf 99999986665999999999-987119
No 225
>>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein structure initiative; 1.85A {Nitrosomonas europaea} (A:90-170)
Probab=34.28 E-value=29 Score=16.42 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=18.5
Q ss_pred HCCCCHHHHHHHHCCCCHHHHH
Q ss_conf 8186588999996785434666
Q gi|254780431|r 16 SEGLSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 16 ~eG~SasqIA~~lGgvtRNAVI 37 (178)
.-|||-++-|+.|| +||-.|.
T Consensus 12 r~gLsl~~AAeALG-isrRmi~ 32 (81)
T 2auw_A 12 RNNLSLTTAAEALG-ISRRXVS 32 (81)
T ss_dssp HTTCCHHHHHHHHT-SCHHHHH
T ss_pred HCCCCHHHHHHHHC-CCHHHHH
T ss_conf 85999999999949-9999999
No 226
>>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} (A:1-77)
Probab=34.23 E-value=36 Score=15.82 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=21.6
Q ss_pred CC-CHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 86-5889999967854346666777514
Q gi|254780431|r 18 GL-SASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 18 G~-SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
-+ |-.+||+++| |||+.|--=.++|-
T Consensus 30 ~lps~~~La~~~~-vSr~tvr~al~~L~ 56 (77)
T 1hw1_A 30 ILPAERELSELIG-VTRTTLREVLQRLA 56 (77)
T ss_dssp BCCCHHHHHHHHT-CCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf 8906999999979-29999999999999
No 227
>>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} (A:)
Probab=33.91 E-value=22 Score=17.26 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=22.1
Q ss_pred CCC-CHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 186-5889999967854346666777514
Q gi|254780431|r 17 EGL-SASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 17 eG~-SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
+-| |-.+||+++| ||||.|--=..+|-
T Consensus 33 ~~LPs~~~La~~~~-vSr~tvr~Al~~L~ 60 (102)
T 1v4r_A 33 DTLPSVADIRAQFG-VAAKTVSRALAVLK 60 (102)
T ss_dssp SBCCCHHHHHHHSS-SCTTHHHHHTTTTT
T ss_pred CCCCCHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf 99868999999979-79999999999999
No 228
>>1nvp_B Transcription initiation factor IIA alpha chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} (B:)
Probab=33.01 E-value=20 Score=17.54 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 7899999999998186588999
Q gi|254780431|r 4 TVERIDKLKKFWSEGLSASQIA 25 (178)
Q Consensus 4 Tderve~LkkLW~eG~SasqIA 25 (178)
.+.-.+.||++|..-|++|..+
T Consensus 34 De~vL~eLk~~We~KL~qs~a~ 55 (57)
T 1nvp_B 34 DEQVLMELKTLWENKLMQSRAV 55 (57)
T ss_dssp CHHHHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHHHHHHCCC
T ss_conf 7899999999999999883665
No 229
>>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, replication initiation; HET: ADP; 2.70A {Aquifex aeolicus} (A:215-324)
Probab=33.01 E-value=36 Score=15.79 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 1865889999967854346666777514
Q gi|254780431|r 17 EGLSASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 17 eG~SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
-|+|-.+||+.+|+-+...|+=-+.++-
T Consensus 58 ~~~sl~~Ig~~fg~rdhsTV~~a~~kie 85 (110)
T 1l8q_A 58 CSASLIEIARAFKRKDHTTVIHAIRSVE 85 (110)
T ss_dssp HCCCHHHHHHHSSCCCSTHHHHHHHHHH
T ss_pred HCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 5789999999948997369999999999
No 230
>>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structure initiative; 2.30A {Rhodobacter sphaeroides 2} (A:1-72)
Probab=32.64 E-value=31 Score=16.26 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=15.8
Q ss_pred CCCCHHHHHHHHCCCCHHHHH
Q ss_conf 186588999996785434666
Q gi|254780431|r 17 EGLSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 17 eG~SasqIA~~lGgvtRNAVI 37 (178)
+|.|-.+||++.| ||+-+|-
T Consensus 49 ~~~si~~Ia~~ag-vs~~~iY 68 (72)
T 3bru_A 49 SSVGVDEILKAAR-VPKGSFY 68 (72)
T ss_dssp TTCCHHHHHHHHT-CCHHHHH
T ss_pred CCCCHHHHHHHHC-CCCCCHH
T ss_conf 5067999999868-8963233
No 231
>>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} (A:49-91)
Probab=32.36 E-value=31 Score=16.18 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=17.8
Q ss_pred CCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 8768887716888887057751
Q gi|254780431|r 148 DVCNDSPYCDYHKKLAYQRVND 169 (178)
Q Consensus 148 ~~~~g~PYC~~H~~iAYQP~~~ 169 (178)
.+.+|.-||..|..--|..++.
T Consensus 10 as~~G~lYCKpHf~QLFk~kGn 31 (43)
T 2d8y_A 10 ASLHGRIYCKPHFNQLFKSKGN 31 (43)
T ss_dssp CCSSSCCCCHHHHHHHSCCCSC
T ss_pred EEECCEEECHHHHHHHCCCCCC
T ss_conf 8179999478889987177657
No 232
>>1nh2_B Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} (B:)
Probab=32.09 E-value=15 Score=18.27 Aligned_cols=22 Identities=18% Similarity=0.599 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 7899999999998186588999
Q gi|254780431|r 4 TVERIDKLKKFWSEGLSASQIA 25 (178)
Q Consensus 4 Tderve~LkkLW~eG~SasqIA 25 (178)
.+.-.+.||++|..-|++|..+
T Consensus 30 de~vL~eLk~~We~Kl~qs~a~ 51 (53)
T 1nh2_B 30 DEQTLQDLKNIWQKKLTETKVT 51 (53)
T ss_dssp CHHHHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHHHHHCCCC
T ss_conf 7899999999999999872766
No 233
>>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} (A:1-94)
Probab=31.92 E-value=39 Score=15.59 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=26.5
Q ss_pred HHHHHHHHHHH-------CCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999999998-------186588999996785434666677751
Q gi|254780431|r 6 ERIDKLKKFWS-------EGLSASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 6 erve~LkkLW~-------eG~SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
.-.+.|+.+=. +=++-.+||+++| |||+.|--=..+|
T Consensus 32 ~i~~~l~~~I~~g~l~~G~~l~e~~La~~~~-vSr~tvR~al~~L 75 (94)
T 2hs5_A 32 RVAGILRDAIIDGTFRPGARLSEPDICAALD-VSRNTVREAFQIL 75 (94)
T ss_dssp HHHHHHHHHHHHTSSCTTCEECHHHHHHHHT-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf 9999999999829999909869999999979-5999999999999
No 234
>>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum atcc 13032} PDB: 1v7b_A 2zoy_A 2yvh_A* 2dh0_A* 2zoz_A* (A:)
Probab=31.80 E-value=32 Score=16.10 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=17.3
Q ss_pred HHHHHCC---CCHHHHHHHHCCCCHHHH
Q ss_conf 9999818---658899999678543466
Q gi|254780431|r 12 KKFWSEG---LSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 12 kkLW~eG---~SasqIA~~lGgvtRNAV 36 (178)
+-+..+| .|-.+||++.| |||.++
T Consensus 15 ~l~~~~G~~~~ti~~Ia~~ag-vs~~ti 41 (185)
T 2yve_A 15 DYIGEYSLETLSYDSLAEATG-LSKSGL 41 (185)
T ss_dssp HHHHHSCSTTCCHHHHHHHHC-CCHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHC-CCHHCC
T ss_conf 999985925178999999868-374022
No 235
>>2fd5_A Transcriptional regulator; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} (A:1-75)
Probab=31.65 E-value=40 Score=15.52 Aligned_cols=27 Identities=15% Similarity=0.058 Sum_probs=19.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCCHHHH
Q ss_conf 9999999818658899999678543466
Q gi|254780431|r 9 DKLKKFWSEGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 9 e~LkkLW~eG~SasqIA~~lGgvtRNAV 36 (178)
+.+.+.=-++.|..+||+++| ||+.++
T Consensus 18 ~l~~~~G~~~~t~~~Ia~~ag-vs~~~~ 44 (75)
T 2fd5_A 18 QALLERGAVEPSVGEVMGAAG-LTVGGF 44 (75)
T ss_dssp HHHHHHTTTSCCHHHHHHHTT-CCGGGG
T ss_pred HHHHHHCCCCCCHHHHHHHHC-CCCCHH
T ss_conf 999971945168999998738-994269
No 236
>>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} (A:179-227)
Probab=31.62 E-value=35 Score=15.85 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=18.7
Q ss_pred CCHHHHHHHHCCCCHHHHH---HHHHHHCCCC
Q ss_conf 6588999996785434666---6777514554
Q gi|254780431|r 19 LSASQIAVQLGGVTRNAVI---GKLHRLFLSN 47 (178)
Q Consensus 19 ~SasqIA~~lGgvtRNAVI---GK~hRLgLs~ 47 (178)
+|-.+||..+| +||-.|- .+-.+.||-.
T Consensus 1 ltq~elA~~lG-~sr~tvsR~l~~l~~~glI~ 31 (49)
T 3dkw_A 1 VAKQLVAGHLS-IQPETFSRIMHRLGDEGIIH 31 (49)
T ss_dssp SCTHHHHHHTT-SCHHHHHHHHHHHHHHTSEE
T ss_pred CCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEE
T ss_conf 88999988869-98999999999999789799
No 237
>>3iyj_F Major capsid protein L1; bovine papillomavirus BPV1, single particle cryo-EM, high resolution, late protein, virion; 4.20A {Bovine papillomavirus type 1} (F:)
Probab=31.58 E-value=21 Score=17.31 Aligned_cols=28 Identities=18% Similarity=0.469 Sum_probs=23.0
Q ss_pred CCCCCCCCCCCCC-----CCCCCCCCEECCCCC
Q ss_conf 3336843200557-----899864500478787
Q gi|254780431|r 122 LMELTDNTCKWPL-----GDPFGKDFSFCGSDV 149 (178)
Q Consensus 122 Ll~Lte~tCkWPi-----GDP~~~dF~FCG~~~ 149 (178)
-||+-..+||||- -||-.+..+||++.-
T Consensus 217 PLDIv~sicKyPD~LkM~~d~yGds~FF~~rRE 249 (495)
T 3iyj_F 217 PLDIQNEICLYPDYLKMAEDAAGNSMFFFARKE 249 (495)
T ss_dssp CTTTTTSBBCCBCHHHHTTCSSCTTCSEEEEEE
T ss_pred CHHHHCCCCCCCHHHHCCCCCCCCEEEEEEHHH
T ss_conf 736635510485566315565476668976578
No 238
>>2ph0_A Uncharacterized protein; Q6D2T7, ERWCT, NESG, EWR41, structural genomics, PSI-2, protein structure initiative; 1.85A {Pectobacterium carotovorum} (A:)
Probab=31.51 E-value=40 Score=15.51 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=21.5
Q ss_pred HHHHHHHC--CCCHHHHHHHHCCCCHHHHH
Q ss_conf 99999981--86588999996785434666
Q gi|254780431|r 10 KLKKFWSE--GLSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 10 ~LkkLW~e--G~SasqIA~~lGgvtRNAVI 37 (178)
.|+.|+.+ +++...||++|| ||+-.+|
T Consensus 4 ~i~~~~~~~p~~~~~d~A~~lg-vse~ell 32 (174)
T 2ph0_A 4 TLNELLATNPDGTLEDIAGKYN-TSLFAVV 32 (174)
T ss_dssp CHHHHHHTCCCSCHHHHHHHTT-SCHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCC-CCHHHHH
T ss_conf 8999998888963999998809-9999999
No 239
>>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor A3} (A:1-74)
Probab=30.89 E-value=41 Score=15.44 Aligned_cols=21 Identities=14% Similarity=0.253 Sum_probs=16.8
Q ss_pred HCCCCHHHHHHHHCCCCHHHHH
Q ss_conf 8186588999996785434666
Q gi|254780431|r 16 SEGLSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 16 ~eG~SasqIA~~lGgvtRNAVI 37 (178)
-+++|-++||++.| ||+.++-
T Consensus 26 ~~~~ti~~Ia~~~g-vs~~t~Y 46 (74)
T 2d6y_A 26 IAGARIDRIAAEAR-ANKQLIY 46 (74)
T ss_dssp TTSCCHHHHHHHHT-CCHHHHH
T ss_pred CCCCCHHHHHHHHC-CCHHHHH
T ss_conf 14077999999859-1988996
No 240
>>1qbj_A Protein (double-stranded RNA specific adenosine deaminase (ADAR1)); protein/Z-DNA complex, hydrolase/DNA complex; HET: DNA; 2.10A {Homo sapiens} (A:)
Probab=30.59 E-value=41 Score=15.41 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=22.8
Q ss_pred HHHHHHH----CCCCHHHHHHHHCCCCHHHH---HHHHHHHCCCCC
Q ss_conf 9999998----18658899999678543466---667775145544
Q gi|254780431|r 10 KLKKFWS----EGLSASQIAVQLGGVTRNAV---IGKLHRLFLSNR 48 (178)
Q Consensus 10 ~LkkLW~----eG~SasqIA~~lGgvtRNAV---IGK~hRLgLs~R 48 (178)
.|.-|-. .+++|-+||++|| |++--| +=+..+-|...+
T Consensus 15 Il~~L~~~~~~~~~tA~~LAk~Lg-i~Kk~vNr~LY~L~k~g~v~~ 59 (81)
T 1qbj_A 15 ILKFLEELGEGKATTAHDLSGKLG-TPKKEINRVLYSLAKKGKLQK 59 (81)
T ss_dssp HHHHHHHHCTTCCBCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEE
T ss_conf 999998548997510999999969-888898999999998788320
No 241
>>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} (A:)
Probab=30.55 E-value=35 Score=15.89 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHCCCCHHHHH
Q ss_conf 186588999996785434666
Q gi|254780431|r 17 EGLSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 17 eG~SasqIA~~lGgvtRNAVI 37 (178)
++.|-.+||++.| ||+.++-
T Consensus 30 ~~~t~~~IA~~ag-vs~~t~Y 49 (219)
T 2w53_A 30 ARTTLEMIGARAG-YTRGAVY 49 (219)
T ss_dssp TTCCHHHHHHHHT-SCHHHHH
T ss_pred CCCCHHHHHHHHC-CCCCHHH
T ss_conf 4087999999868-8844087
No 242
>>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, protein structure initiative; HET: MSE; 1.52A {Rhodococcus SP} (A:)
Probab=30.43 E-value=33 Score=16.02 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=17.7
Q ss_pred HHHHCC---CCHHHHHHHHCCCCHHHHH
Q ss_conf 999818---6588999996785434666
Q gi|254780431|r 13 KFWSEG---LSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 13 kLW~eG---~SasqIA~~lGgvtRNAVI 37 (178)
-+..+| .|-.+||++.| ||+.+|-
T Consensus 51 l~~~~G~~~~t~~~IA~~ag-vs~~tlY 77 (214)
T 2guh_A 51 AFATRPYREITLKDIAEDAG-VSAPLII 77 (214)
T ss_dssp HHHHSCGGGCCHHHHHHHHT-SCHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHC-CCHHHHH
T ss_conf 99983903067999999939-8988998
No 243
>>1vr4_A Hypothetical protein APC22750; structural genomics, pentamer, PSI, protein structure initiative; 2.09A {Bacillus cereus atcc 14579} (A:)
Probab=30.37 E-value=23 Score=17.05 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHH
Q ss_conf 999999999981865889999967854346666
Q gi|254780431|r 6 ERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIG 38 (178)
Q Consensus 6 erve~LkkLW~eG~SasqIA~~lGgvtRNAVIG 38 (178)
-|-+.|.+|+.+ |++||. |||||
T Consensus 57 aR~~A~~rl~~~-------A~~~GA---nAVig 79 (103)
T 1vr4_A 57 ARDIAMDEMKEL-------AKQKGA---NAIVG 79 (103)
T ss_dssp HHHHHHHHHHHH-------HHHTTC---SEEEE
T ss_pred HHHHHHHHHHHH-------HHHCCC---CEEEE
T ss_conf 999999999999-------986899---88999
No 244
>>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} (A:1-86)
Probab=29.83 E-value=42 Score=15.33 Aligned_cols=37 Identities=27% Similarity=0.289 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHHHC-C--CCHHHHHHHH---C-CCCHHHHH
Q ss_conf 97778999999999981-8--6588999996---7-85434666
Q gi|254780431|r 1 MVWTVERIDKLKKFWSE-G--LSASQIAVQL---G-GVTRNAVI 37 (178)
Q Consensus 1 MsWTderve~LkkLW~e-G--~SasqIA~~l---G-gvtRNAVI 37 (178)
+-+|..|+..|.-||.. + +|+.+|-..| | .+++..|=
T Consensus 14 lr~T~~R~~Il~~l~~~~~~h~sa~ei~~~l~~~~~~i~~~TVY 57 (86)
T 1mzb_A 14 LKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVY 57 (86)
T ss_dssp CCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHH
T ss_conf 99798999999999857999999999999999758788889999
No 245
>>1t33_A Putative transcriptional repressor (TETR/ACRR family); structural genomics, TETR/CCRR family, helix turn helix DNA binding domain; 2.20A {Salmonella typhimurium LT2} (A:)
Probab=29.56 E-value=43 Score=15.30 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=19.0
Q ss_pred HHHHHHCCC--CHHHHHHHHCCCCHHHH
Q ss_conf 999998186--58899999678543466
Q gi|254780431|r 11 LKKFWSEGL--SASQIAVQLGGVTRNAV 36 (178)
Q Consensus 11 LkkLW~eG~--SasqIA~~lGgvtRNAV 36 (178)
++-+..+|+ |-.+||++.| ||+.++
T Consensus 22 ~~lf~~~G~~~T~~~IA~~aG-vs~~ti 48 (224)
T 1t33_A 22 LAQFGEYGLHATTRDIAALAG-QNIAAI 48 (224)
T ss_dssp HHHHHHHGGGSCHHHHHHHHT-SCHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHC-CCCCCC
T ss_conf 999998790756999999838-992421
No 246
>>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} (A:)
Probab=29.49 E-value=43 Score=15.29 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHHC-C-CCHHHHHHHHCCCCHHHHHHH
Q ss_conf 7778999999999981-8-658899999678543466667
Q gi|254780431|r 2 VWTVERIDKLKKFWSE-G-LSASQIAVQLGGVTRNAVIGK 39 (178)
Q Consensus 2 sWTderve~LkkLW~e-G-~SasqIA~~lGgvtRNAVIGK 39 (178)
.||.|--++|..+=.+ | ..=++||..+|..+|+++==+
T Consensus 4 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~l~~Rt~~qcr 43 (53)
T 1w0t_A 4 AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLK 43 (53)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHH
T ss_conf 8899999999999999788609998675578997999999
No 247
>>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis} (A:1-82)
Probab=29.45 E-value=43 Score=15.28 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=21.4
Q ss_pred C-CHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 6-5889999967854346666777514
Q gi|254780431|r 19 L-SASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 19 ~-SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
| |-.+||+++| |||+.|.-=..+|.
T Consensus 34 LPs~~~La~~~~-vSr~tvr~Al~~L~ 59 (82)
T 2wv0_A 34 LPSEREYAEQFG-ISRMTVRQALSNLV 59 (82)
T ss_dssp CCCHHHHHHHHT-CCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf 936999999979-69999999999999
No 248
>>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, insulin gene enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator; 2.05A {Mus musculus} (A:39-92,A:147-169)
Probab=29.06 E-value=25 Score=16.89 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=14.9
Q ss_pred CCCCCCCCHHHHHHHCCCC
Q ss_conf 7688877168888870577
Q gi|254780431|r 149 VCNDSPYCDYHKKLAYQRV 167 (178)
Q Consensus 149 ~~~g~PYC~~H~~iAYQP~ 167 (178)
..+|.+||..|..--|.+.
T Consensus 11 ~kdg~~YC~~dY~~lfa~k 29 (77)
T 2rgt_A 11 SRGESVYCKDDFFKRFGTK 29 (77)
T ss_dssp ESSSCEECHHHHHHHHSCB
T ss_pred CCCCCCCCCCHHHCCCCCC
T ss_conf 5699443755664416886
No 249
>>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=28.99 E-value=44 Score=15.23 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 77789999999999-81865889999967854346666777
Q gi|254780431|r 2 VWTVERIDKLKKFW-SEGLSASQIAVQLGGVTRNAVIGKLH 41 (178)
Q Consensus 2 sWTderve~LkkLW-~eG~SasqIA~~lGgvtRNAVIGK~h 41 (178)
.||+|--++|.+|- .-|..=+.||..+| -|-++|--+-+
T Consensus 11 ~WT~eED~~L~~~v~~~g~~W~~Ia~~~g-Rt~~q~r~R~~ 50 (66)
T 2din_A 11 EWSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYE 50 (66)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHS-SCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHCCC-CCHHHHHHHHH
T ss_conf 96889999999999991978998042207-88799999999
No 250
>>1b8t_A Protein (CRP1); LIM domain, muscle differentiation; NMR {Gallus gallus} (A:34-90)
Probab=28.84 E-value=21 Score=17.36 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=15.8
Q ss_pred CCCCCCCCHHHHHHHCCCC
Q ss_conf 7688877168888870577
Q gi|254780431|r 149 VCNDSPYCDYHKKLAYQRV 167 (178)
Q Consensus 149 ~~~g~PYC~~H~~iAYQP~ 167 (178)
..+|.|||..|..--|.|.
T Consensus 18 ~~~g~~yC~~~y~~~f~~~ 36 (57)
T 1b8t_A 18 VHGDEIYCKSCYGKKYGPK 36 (57)
T ss_dssp EETTEEEEHHHHHHHHSCC
T ss_pred CCCCEEEEHHHHHHHCCCC
T ss_conf 6499750088887632874
No 251
>>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal domain, homeodomain-like; 1.55A {Aquifex aeolicus VF5} (A:)
Probab=28.73 E-value=44 Score=15.20 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=16.2
Q ss_pred CCCCHHHHHHHHCCCCHHHHH
Q ss_conf 186588999996785434666
Q gi|254780431|r 17 EGLSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 17 eG~SasqIA~~lGgvtRNAVI 37 (178)
++.|-.+||++.| ||+.+|-
T Consensus 21 ~~~ti~~IA~~ag-vs~~tiY 40 (179)
T 2eh3_A 21 QGTSVEEIVKRAN-LSKGAFY 40 (179)
T ss_dssp TTCCHHHHHHHHT-CCHHHHH
T ss_pred CCCCHHHHHHHHC-CCCCCHH
T ss_conf 5075999999868-1934011
No 252
>>3iuv_A Uncharacterized TETR family protein; APC6223, structural genomics, PSI-2, protein structure initiative; 2.55A {Streptomyces coelicolor A3} (A:)
Probab=28.39 E-value=38 Score=15.65 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=18.8
Q ss_pred HHHHHHHH-HC---CCCHHHHHHHHCCCCHHHH
Q ss_conf 99999999-81---8658899999678543466
Q gi|254780431|r 8 IDKLKKFW-SE---GLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 8 ve~LkkLW-~e---G~SasqIA~~lGgvtRNAV 36 (178)
++...+|. .+ +.|-.+||++.| ||+.++
T Consensus 16 l~aa~~l~~~~G~~~~ti~~Ia~~ag-vs~~t~ 47 (201)
T 3iuv_A 16 IDAAIRVVGQKGIAGLSHRTVAAEAD-VPLGST 47 (201)
T ss_dssp HHHHHHHHHTTCGGGCCHHHHHHHHT-CCHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHH
T ss_conf 99999999984903067999999978-586179
No 253
>>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator of TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824} (A:1-80)
Probab=28.36 E-value=45 Score=15.16 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=18.4
Q ss_pred HHHHHHCC---CCHHHHHHHHCCCCHHHH
Q ss_conf 99999818---658899999678543466
Q gi|254780431|r 11 LKKFWSEG---LSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 11 LkkLW~eG---~SasqIA~~lGgvtRNAV 36 (178)
+.-||.+| .|-.+||+++| ||+.+|
T Consensus 21 ~~l~~~~G~~~~t~~~Ia~~~g-vs~~~~ 48 (80)
T 3b81_A 21 WDIFIANGYENTTLAFIINKLG-ISKGAL 48 (80)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHT-CCHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHC-CCHHHH
T ss_conf 9999974904078999999959-898899
No 254
>>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=28.36 E-value=45 Score=15.16 Aligned_cols=42 Identities=29% Similarity=0.427 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHCC-C------CHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 77789999999999818-6------588999996785434666677751
Q gi|254780431|r 2 VWTVERIDKLKKFWSEG-L------SASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 2 sWTderve~LkkLW~eG-~------SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
.||.|--++|.++=.+- . .=.+||..|+|=|.+.+.-.-+.+
T Consensus 10 ~WT~eEd~~L~~~v~~~g~~~~~~~~W~~Ia~~l~~Rt~~qcr~rw~~~ 58 (75)
T 2yum_A 10 LWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKY 58 (75)
T ss_dssp CCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 9799999999999998374567787699998771999899999999999
No 255
>>2aa1_B Hemoglobin beta-C chain; ROOT effect, cooperativity, antarctic FISH, oxygen storage/transport complex; HET: HEM; 1.80A {Trematomus newnesi} (B:)
Probab=28.31 E-value=45 Score=15.16 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 97778999999999981865889999967
Q gi|254780431|r 1 MVWTVERIDKLKKFWSEGLSASQIAVQLG 29 (178)
Q Consensus 1 MsWTderve~LkkLW~eG~SasqIA~~lG 29 (178)
|+.|++-++.+++-|.. +.+.+++..+-
T Consensus 1 m~Ls~~q~~~I~~sW~~-v~~~~~g~~~~ 28 (146)
T 2aa1_B 1 VEWTDFERATIKDIFSK-LEYDVVGPATL 28 (146)
T ss_dssp CCCCHHHHHHHHHHHHH-CCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-CCHHHHHHHHH
T ss_conf 99989999999999984-18325899999
No 256
>>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding protein; 2.00A {Staphylococcus aureus} (A:1-73)
Probab=28.20 E-value=45 Score=15.15 Aligned_cols=48 Identities=23% Similarity=0.379 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHCC-CCHHHHHHHHC---CCCHHHHHHHHHHH---CCCCCCC
Q ss_conf 7789999999999818-65889999967---85434666677751---4554455
Q gi|254780431|r 3 WTVERIDKLKKFWSEG-LSASQIAVQLG---GVTRNAVIGKLHRL---FLSNRVK 50 (178)
Q Consensus 3 WTderve~LkkLW~eG-~SasqIA~~lG---gvtRNAVIGK~hRL---gLs~R~~ 50 (178)
=||---+.++-||..| .++.||.+.|. +..+|.|.=-..|| |+-.+.+
T Consensus 8 L~~~E~~iM~~iW~~~~~t~~ei~e~l~~~~~~~~sTv~T~L~RL~~KG~v~~~k 62 (73)
T 1sd4_A 8 ISXAEWDVXNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (73)
T ss_dssp CCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 8999999999998489978999999852436984877999999998450404542
No 257
>>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor A3} (A:)
Probab=28.12 E-value=39 Score=15.60 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=17.6
Q ss_pred HHHHHHCC---CCHHHHHHHHCCCCHHHH
Q ss_conf 99999818---658899999678543466
Q gi|254780431|r 11 LKKFWSEG---LSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 11 LkkLW~eG---~SasqIA~~lGgvtRNAV 36 (178)
++-++.+| .|-.+||++.| ||+.++
T Consensus 22 ~~l~~~~G~~~~t~~~IA~~ag-vs~~ti 49 (200)
T 2hyj_A 22 AEIASEEGLDGITIGRLAEELE-MSKSGV 49 (200)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHT-CCHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHC-CCHHHH
T ss_conf 9999973944167999999878-380127
No 258
>>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structural genomics, PSI-2; 2.20A {Streptomyces coelicolor} (A:1-88)
Probab=28.10 E-value=45 Score=15.13 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=18.8
Q ss_pred HHHHHH---CCCCHHHHHHHHCCCCHHHHH
Q ss_conf 999998---186588999996785434666
Q gi|254780431|r 11 LKKFWS---EGLSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 11 LkkLW~---eG~SasqIA~~lGgvtRNAVI 37 (178)
++-|+. +++|-.+||++.| ||+.+|-
T Consensus 35 ~~l~~~~G~~~~t~~~Ia~~ag-vs~~~iY 63 (88)
T 3fiw_A 35 LDLLDEVGLDGVSTRRLAKRLG-VEQPSLY 63 (88)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHT-SCTHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHC-CCHHHHH
T ss_conf 9999985935365999999989-3886999
No 259
>>3bwg_A Uncharacterized HTH-type transcriptional regulator YYDK; APC85486, structural genomics, PSI-2, protein structure initiative; 2.09A {Bacillus subtilis subsp} (A:1-82)
Probab=27.72 E-value=46 Score=15.09 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=25.1
Q ss_pred HHHHHHCC--C-CHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 99999818--6-588999996785434666677751455
Q gi|254780431|r 11 LKKFWSEG--L-SASQIAVQLGGVTRNAVIGKLHRLFLS 46 (178)
Q Consensus 11 LkkLW~eG--~-SasqIA~~lGgvtRNAVIGK~hRLgLs 46 (178)
+.-.|..| | |-.++|+++| |||+.|--=..+|--.
T Consensus 19 ~~g~~~~G~~LPs~~~la~~~~-vSr~tvr~Al~~L~~~ 56 (82)
T 3bwg_A 19 EEHQLQQGDKLPVLETLXAQFE-VSKSTITKSLELLEQK 56 (82)
T ss_dssp HHTTCCTTCBCCCHHHHHHHTT-CCHHHHHHHHHHHHHT
T ss_pred HCCCCCCCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_conf 8499999299906999999989-3999999999999986
No 260
>>1jhg_A Trp operon repressor; complex (regulatory protein/peptide), DNA-binding regulatory protein; HET: TRP; 1.30A {Escherichia coli} (A:37-101)
Probab=27.47 E-value=47 Score=15.06 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999999999818658899999678543466667775
Q gi|254780431|r 6 ERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHR 42 (178)
Q Consensus 6 erve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hR 42 (178)
.|++..+.|-....|..+|++++| +| -|.|..+.|
T Consensus 10 qR~~Va~~L~~g~~syreI~~~tG-aS-~aTIsRvsr 44 (65)
T 1jhg_A 10 TRVRIIEELLRGEMSQRELKNELG-AG-IATITRGSN 44 (65)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHC-CC-HHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHC-CC-HHHHHHHHH
T ss_conf 999999999839967999999969-86-566789899
No 261
>>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknown function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor} (A:31-230)
Probab=27.31 E-value=43 Score=15.29 Aligned_cols=19 Identities=16% Similarity=0.551 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHCCCCHHHH
Q ss_conf 18658899999678543466
Q gi|254780431|r 17 EGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 17 eG~SasqIA~~lGgvtRNAV 36 (178)
++.|-.+||++.| ||+.++
T Consensus 19 ~~~ti~~IA~~ag-vs~~t~ 37 (200)
T 2iai_A 19 DGTSXEHLSKAAG-ISKSSI 37 (200)
T ss_dssp TTCCHHHHHHHHT-SCHHHH
T ss_pred CCCCHHHHHHHHC-CCHHHH
T ss_conf 6260999999869-387667
No 262
>>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} (A:)
Probab=26.91 E-value=41 Score=15.44 Aligned_cols=38 Identities=26% Similarity=0.256 Sum_probs=24.3
Q ss_pred HHHHHHHC-CCCHHHHHHHHCCCCH----HHHHHHHHHHCCCCC
Q ss_conf 99999981-8658899999678543----466667775145544
Q gi|254780431|r 10 KLKKFWSE-GLSASQIAVQLGGVTR----NAVIGKLHRLFLSNR 48 (178)
Q Consensus 10 ~LkkLW~e-G~SasqIA~~lGgvtR----NAVIGK~hRLgLs~R 48 (178)
.|.-|-.. ..+|-+||++|| +|. |.++=..-+-|+-.+
T Consensus 16 Il~~Lk~~G~~tA~~lAk~Lg-ltt~k~vn~~Ly~Le~~g~v~~ 58 (79)
T 1xmk_A 16 ICDYLFNVSDSSALNLAKNIG-LTKARDINAVLIDMERQGDVYR 58 (79)
T ss_dssp HHHHHHHTCCEEHHHHHHHHC-GGGHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHCCCCHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCCCC
T ss_conf 999999659843999999949-9726777599999997568001
No 263
>>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A* (A:1-88)
Probab=26.84 E-value=48 Score=14.99 Aligned_cols=49 Identities=18% Similarity=0.122 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHCC--CCHHHHHHHHC----CCCHHHHHHHHHHH---CCCCCC
Q ss_conf 977789999999999818--65889999967----85434666677751---455445
Q gi|254780431|r 1 MVWTVERIDKLKKFWSEG--LSASQIAVQLG----GVTRNAVIGKLHRL---FLSNRV 49 (178)
Q Consensus 1 MsWTderve~LkkLW~eG--~SasqIA~~lG----gvtRNAVIGK~hRL---gLs~R~ 49 (178)
+-+|..|...|.-|...+ +|+.+|-..|. .+++..|==-.+.| ||-.+.
T Consensus 18 lr~T~~R~~il~~l~~~~~~~s~~ei~~~l~~~~~~is~aTVYR~L~~l~~~gli~~~ 75 (88)
T 2fe3_A 18 VRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKEL 75 (88)
T ss_dssp CCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEEE
T ss_conf 9829999999999982899999999999875105332317899999999887654675
No 264
>>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} (C:39-170)
Probab=26.80 E-value=15 Score=18.20 Aligned_cols=10 Identities=30% Similarity=0.139 Sum_probs=7.5
Q ss_pred HHHHHCCCCC
Q ss_conf 7775145544
Q gi|254780431|r 39 KLHRLFLSNR 48 (178)
Q Consensus 39 K~hRLgLs~R 48 (178)
-+|||||-.=
T Consensus 24 lAHRLGLIPl 33 (132)
T 3h0g_C 24 LAHRLGMIPL 33 (132)
T ss_dssp HHHHHHHSCB
T ss_pred EEEECCCCCC
T ss_conf 3654133563
No 265
>>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170} (A:)
Probab=26.73 E-value=42 Score=15.34 Aligned_cols=27 Identities=11% Similarity=0.354 Sum_probs=18.3
Q ss_pred HHHHHHH-H---CCCCHHHHHHHHCCCCHHHH
Q ss_conf 9999999-8---18658899999678543466
Q gi|254780431|r 9 DKLKKFW-S---EGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 9 e~LkkLW-~---eG~SasqIA~~lGgvtRNAV 36 (178)
+...+|. . ++.|-.+||++.| ||+.++
T Consensus 24 ~aA~~l~~~~G~~~~t~~~IA~~ag-vs~~ti 54 (208)
T 3cwr_A 24 GAAQRLLSSGGAAAXTXEGVASEAG-IAKKTL 54 (208)
T ss_dssp HHHHHHHHHHCGGGCCHHHHHHHHT-CCHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHCC-CCCCCC
T ss_conf 9999999984913047999998759-987765
No 266
>>1qnt_A Methylated-DNA--protein-cysteine methyltransferase; DNA repair, alkyltransferase; 1.9A {Homo sapiens} (A:83-156)
Probab=26.64 E-value=38 Score=15.61 Aligned_cols=40 Identities=23% Similarity=0.168 Sum_probs=26.7
Q ss_pred HHHHHHHHHH----HHCCCCHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 8999999999----981865889999967854346666777514
Q gi|254780431|r 5 VERIDKLKKF----WSEGLSASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 5 derve~LkkL----W~eG~SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
+-+.+.++.| +++-.|.+|||+.+|.-...-.+|.+-+.+
T Consensus 12 ~f~~~V~~~l~~Ip~G~~~TY~~iA~~~g~p~~~RaVg~A~~~N 55 (74)
T 1qnt_A 12 FTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGN 55 (74)
T ss_dssp HHHHHHHHHHHHCCTTCCEEHHHHHHHTTCTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 99999999751499944701999999838997799999999868
No 267
>>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} (A:1-95)
Probab=26.55 E-value=45 Score=15.14 Aligned_cols=32 Identities=6% Similarity=0.039 Sum_probs=21.2
Q ss_pred HCCCCHHHHHHHHCCCCHHHHHHHHHHH---CCCCC
Q ss_conf 8186588999996785434666677751---45544
Q gi|254780431|r 16 SEGLSASQIAVQLGGVTRNAVIGKLHRL---FLSNR 48 (178)
Q Consensus 16 ~eG~SasqIA~~lGgvtRNAVIGK~hRL---gLs~R 48 (178)
..+++.++||+.+| +++..|---++-| |+-.+
T Consensus 36 ~~~~~~~eia~~lg-l~~st~~RlL~tL~~~G~v~~ 70 (95)
T 2o0y_A 36 HPTRSLKELVEGTK-LPKTTVVRLVATXCARSVLTS 70 (95)
T ss_dssp BSSBCHHHHHHHHC-CCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCEEEE
T ss_conf 99989999999979-298999999999996690898
No 268
>>2gfn_A HTH-type transcriptional regulator PKSA related protein; transcriptional regulator TETR, PSI-2, regulatory protein, structural genomics; 1.90A {Rhodococcus SP} (A:)
Probab=26.52 E-value=44 Score=15.25 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=17.4
Q ss_pred HHHHHHCC---CCHHHHHHHHCCCCHHHH
Q ss_conf 99999818---658899999678543466
Q gi|254780431|r 11 LKKFWSEG---LSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 11 LkkLW~eG---~SasqIA~~lGgvtRNAV 36 (178)
++-+..+| .|-.+||++.| ||+.++
T Consensus 19 ~~l~~~~G~~~~ti~~Ia~~ag-vs~~ti 46 (209)
T 2gfn_A 19 LALIAREGISAVTTRAVAEESG-WSTGVL 46 (209)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHS-SCHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHC-CCHHHH
T ss_conf 9999983923077999999969-199999
No 269
>>2iu5_A DHAS, hypothetical protein YCEG; synthase, activator, TETR family, dihydroxyacetone; 1.6A {Lactococcus lactis subsp} (A:)
Probab=26.48 E-value=45 Score=15.19 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=18.1
Q ss_pred HHHHHHH-HC---CCCHHHHHHHHCCCCHHHH
Q ss_conf 9999999-81---8658899999678543466
Q gi|254780431|r 9 DKLKKFW-SE---GLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 9 e~LkkLW-~e---G~SasqIA~~lGgvtRNAV 36 (178)
+...+|. .. +.|-.+||++.| ||+.++
T Consensus 20 ~aa~~l~~~~G~~~~ti~~Ia~~ag-vs~~ti 50 (195)
T 2iu5_A 20 KAFKDLMQSNAYHQISVSDIMQTAK-IRRQTF 50 (195)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHT-SCGGGG
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHC-CCHHHH
T ss_conf 9999999876974078999999859-684333
No 270
>>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, structural genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} (A:)
Probab=26.45 E-value=49 Score=14.94 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=17.0
Q ss_pred HHHHHCC---CCHHHHHHHHCCCCHHHH
Q ss_conf 9999818---658899999678543466
Q gi|254780431|r 12 KKFWSEG---LSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 12 kkLW~eG---~SasqIA~~lGgvtRNAV 36 (178)
.-++.+| .|-.+||++.| ||+.++
T Consensus 19 ~l~~~~G~~~~ti~~Ia~~ag-vs~~ti 45 (183)
T 1zk8_A 19 EIADANGVQEVTLASLAQTLG-VRSPSL 45 (183)
T ss_dssp HHHHHHCGGGCCHHHHHHHHT-SCHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHC-CCCCHH
T ss_conf 999970944057999999858-894303
No 271
>>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. RHA1, structural genomics, PSI-2; 1.50A {Rhodococcus SP} (A:)
Probab=26.31 E-value=43 Score=15.31 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=17.1
Q ss_pred HHHHHC---CCCHHHHHHHHCCCCHHHH
Q ss_conf 999981---8658899999678543466
Q gi|254780431|r 12 KKFWSE---GLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 12 kkLW~e---G~SasqIA~~lGgvtRNAV 36 (178)
+-++.+ +.|-.+||++.| ||+.++
T Consensus 25 ~lf~~~G~~~~ti~~Ia~~ag-vs~~t~ 51 (204)
T 2ibd_A 25 TLFAERGLRATTVRDIADAAG-ILSGSL 51 (204)
T ss_dssp HHHHHHCSTTCCHHHHHHHTT-SCHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHC-CCCCHH
T ss_conf 999984934177999999868-883068
No 272
>>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis} (A:1-96)
Probab=26.23 E-value=49 Score=14.92 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.0
Q ss_pred C-CHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 6-588999996785434666677751
Q gi|254780431|r 19 L-SASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 19 ~-SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
| |-.++|++|| |||+.|--=..+|
T Consensus 53 LPs~~~La~~~g-vsr~tvr~Al~~L 77 (96)
T 3eet_A 53 LPSQARIREEYG-VSDTVALEARKVL 77 (96)
T ss_dssp CCCHHHHHHHHT-CCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf 917999999989-5999999999999
No 273
>>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii atcc 33406} (A:)
Probab=26.20 E-value=47 Score=15.06 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=16.8
Q ss_pred HHHHHC---CCCHHHHHHHHCCCCHHHH
Q ss_conf 999981---8658899999678543466
Q gi|254780431|r 12 KKFWSE---GLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 12 kkLW~e---G~SasqIA~~lGgvtRNAV 36 (178)
.-++.. +.|-.+||++.| ||+.++
T Consensus 22 ~l~~~~G~~~~ti~~IA~~ag-vs~~ti 48 (216)
T 3f0c_A 22 KRFAHYGLCKTTXNEIASDVG-XGKASL 48 (216)
T ss_dssp HHHHHHCSSSCCHHHHHHHHT-CCHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHC-CCHHHH
T ss_conf 999974904078999999879-198789
No 274
>>2qtq_A Transcriptional regulator, TETR family; YP_496351.1, predicted DNA-binding transcriptional regulator; HET: MSE; 1.85A {Novosphingobium aromaticivorans DSM12444} PDB: 2rha_A* (A:1-81)
Probab=26.12 E-value=49 Score=14.91 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=16.6
Q ss_pred HCCCCHHHHHHHHCCCCHHHH
Q ss_conf 818658899999678543466
Q gi|254780431|r 16 SEGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 16 ~eG~SasqIA~~lGgvtRNAV 36 (178)
-+|+|..+||+++| ||+-+|
T Consensus 34 ~~~~t~~~Ia~~ag-vs~~~i 53 (81)
T 2qtq_A 34 VVDISLSELSLRSG-LNSALV 53 (81)
T ss_dssp SSCCCHHHHHHHHC-CCHHHH
T ss_pred CCCCCHHHHHHHHC-CCHHHH
T ss_conf 66378999999979-098899
No 275
>>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} (A:)
Probab=26.04 E-value=44 Score=15.20 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=18.3
Q ss_pred HHHHHH-HHCC---CCHHHHHHHHCCCCHHHH
Q ss_conf 999999-9818---658899999678543466
Q gi|254780431|r 9 DKLKKF-WSEG---LSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 9 e~LkkL-W~eG---~SasqIA~~lGgvtRNAV 36 (178)
+...+| +..| .|-.+||++.| ||+.+|
T Consensus 15 ~aA~~l~~~~G~~~~ti~~Ia~~ag-vs~~ti 45 (206)
T 1vi0_A 15 DAAVEVIAENGYHQSQVSKIAKQAG-VADGTI 45 (206)
T ss_dssp HHHHHHHHHHCGGGCCHHHHHHHHT-SCHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHH
T ss_conf 9999999983934077999999959-887579
No 276
>>2zcm_A Biofilm operon icaabcd HTH-type negative transcriptional regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis RP62A} PDB: 2zcn_A (A:)
Probab=26.01 E-value=43 Score=15.26 Aligned_cols=25 Identities=12% Similarity=0.364 Sum_probs=17.6
Q ss_pred HHHHHHCC---CCHHHHHHHHCCCCHHHH
Q ss_conf 99999818---658899999678543466
Q gi|254780431|r 11 LKKFWSEG---LSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 11 LkkLW~eG---~SasqIA~~lGgvtRNAV 36 (178)
+.-++.+| .|-.+||++.| ||+.++
T Consensus 17 ~~l~~~~G~~~~t~~~Ia~~ag-vs~~ti 44 (192)
T 2zcm_A 17 ITLFSEKGYDGTTLDDISKSVN-IKKASL 44 (192)
T ss_dssp HHHHHHHCTTTCCHHHHHHHTT-CCHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHC-CCHHHH
T ss_conf 9999873935066999999879-099999
No 277
>>3egq_A TETR family transcriptional regulator; NP_070644.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus} (A:1-69)
Probab=25.99 E-value=44 Score=15.19 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=15.6
Q ss_pred CCCCHHHHHHHHCCCCHHHH
Q ss_conf 18658899999678543466
Q gi|254780431|r 17 EGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 17 eG~SasqIA~~lGgvtRNAV 36 (178)
++.|-.+||+++| ||+-++
T Consensus 23 ~~~t~~~Ia~~~g-is~~t~ 41 (69)
T 3egq_A 23 HEVSIEEIAREAK-VSKSLI 41 (69)
T ss_dssp GGCCHHHHHHHHT-SCHHHH
T ss_pred CCCCHHHHHHHHC-CCCCCH
T ss_conf 3067999999868-394207
No 278
>>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, protein structure initiative; 2.10A {Agrobacterium tumefaciens str} (A:)
Probab=25.98 E-value=44 Score=15.20 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=17.0
Q ss_pred HHHHHC---CCCHHHHHHHHCCCCHHHH
Q ss_conf 999981---8658899999678543466
Q gi|254780431|r 12 KKFWSE---GLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 12 kkLW~e---G~SasqIA~~lGgvtRNAV 36 (178)
+-+..+ +.|-.+||++.| ||+.+|
T Consensus 26 ~l~~~~G~~~~si~~IA~~ag-vs~~ti 52 (221)
T 3c2b_A 26 RLLVEGGEKALTTSGLARAAN-CSKESL 52 (221)
T ss_dssp HHHHHHCGGGCCHHHHHHHHT-CCHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHC-CCCCCH
T ss_conf 999985925178999999858-980205
No 279
>>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} (A:1-64)
Probab=25.39 E-value=51 Score=14.82 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=24.2
Q ss_pred HHHHHHHHH--HCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 999999999--81865889999967854346666777
Q gi|254780431|r 7 RIDKLKKFW--SEGLSASQIAVQLGGVTRNAVIGKLH 41 (178)
Q Consensus 7 rve~LkkLW--~eG~SasqIA~~lGgvtRNAVIGK~h 41 (178)
-++.|.-|= ..+++.++||+.+| +++..|---++
T Consensus 10 ~l~iL~~l~~~~~~~t~~eia~~~g-lp~st~~Rll~ 45 (64)
T 1mkm_A 10 AFEILDFIVKNPGDVSVSEIAEKFN-MSVSNAYKYMV 45 (64)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHTT-CCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHHHHHHH
T ss_conf 9999999972899989999999879-19999999999
No 280
>>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} (A:)
Probab=25.20 E-value=51 Score=14.80 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999999999818658899999678543466667775
Q gi|254780431|r 6 ERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHR 42 (178)
Q Consensus 6 erve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hR 42 (178)
++-+.+.+|-..|.|-++|+++.| ++.|.+-.-.+|
T Consensus 10 h~adI~AaL~krG~sLa~lsr~~g-ls~stl~nal~r 45 (74)
T 1neq_A 10 HRADVIAGLKKRKLSLSALSRQFG-YAPTTLANALER 45 (74)
T ss_dssp CHHHHHHHHHTTSCCHHHHHHHHS-SCHHHHHHTTTS
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHCC
T ss_conf 999999999996887999999909-987899998837
No 281
>>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} (A:)
Probab=25.19 E-value=43 Score=15.32 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHCCCCHHHH
Q ss_conf 18658899999678543466
Q gi|254780431|r 17 EGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 17 eG~SasqIA~~lGgvtRNAV 36 (178)
++.|-.+||++.| ||+.++
T Consensus 25 ~~~si~~Ia~~ag-vs~~ti 43 (191)
T 1sgm_A 25 HATGLNQIVKESG-APKGSL 43 (191)
T ss_dssp TTCCHHHHHHHHC-CCSCHH
T ss_pred CCCCHHHHHHHHC-CCHHHH
T ss_conf 3066999999879-098899
No 282
>>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint center for structural genomics; HET: MSE; 1.92A {Ralstonia eutropha JMP134} (A:1-82)
Probab=25.17 E-value=51 Score=14.79 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 1865889999967854346666777514
Q gi|254780431|r 17 EGLSASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 17 eG~SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
+-++-.+||+++| |||+.|--=..+|-
T Consensus 38 ~~l~e~~La~~~~-vSr~~vr~Al~~L~ 64 (82)
T 3ihu_A 38 QRLVETDLVAHFG-VGRNSVREALQRLA 64 (82)
T ss_dssp CEECHHHHHHHHT-CCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf 9669999999989-88899999999999
No 283
>>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} (A:254-304)
Probab=24.97 E-value=52 Score=14.77 Aligned_cols=35 Identities=31% Similarity=0.402 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 999999999981865889999967854346666777
Q gi|254780431|r 6 ERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLH 41 (178)
Q Consensus 6 erve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~h 41 (178)
|+--+.+.|=..|-.-++-|+.|| +||+..-=|..
T Consensus 16 E~~~I~~aL~~~~Gn~~~aA~~LG-isr~TL~rklk 50 (51)
T 1ojl_A 16 EKEVILAALEKTGGNKTEAARQLG-ITRKTLLAKLS 50 (51)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHT-SCHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHC-CCHHHHHHHHC
T ss_conf 999999999992998999999988-89999999867
No 284
>>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis} (A:1-81)
Probab=24.85 E-value=52 Score=14.75 Aligned_cols=43 Identities=14% Similarity=0.066 Sum_probs=31.6
Q ss_pred CCCCH--HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 97778--999999999981865889999967854346666777514
Q gi|254780431|r 1 MVWTV--ERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 1 MsWTd--erve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
|++.+ -.||-|==.+++++|..+|++.|| ++...|---+..|.
T Consensus 11 m~~~~l~~iiEAiLF~s~epvs~~~La~~~~-~~~~~v~~~l~~L~ 55 (81)
T 2z99_A 11 LDADELKRVLEALLLVIDTPVTADALAAATE-QPVYRVAAKLQLMA 55 (81)
T ss_dssp CCHHHHHHHHHHHHHHCSSCBCHHHHHHHHT-SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf 8999999999999997179989999998848-98789999999999
No 285
>>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli} (A:47-107)
Probab=24.83 E-value=52 Score=14.75 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHCC-CCHHHHHHHHCCCCHHHHHHHHHHH--CCC
Q ss_conf 789999999999818-6588999996785434666677751--455
Q gi|254780431|r 4 TVERIDKLKKFWSEG-LSASQIAVQLGGVTRNAVIGKLHRL--FLS 46 (178)
Q Consensus 4 Tderve~LkkLW~eG-~SasqIA~~lGgvtRNAVIGK~hRL--gLs 46 (178)
.+.|++..+.|=.++ +|-++||.++| ++=.+-..++.+- |++
T Consensus 8 ~~~Rl~~a~~~L~~~~~~i~~ia~~~G-f~~~s~f~r~Fk~~~G~t 52 (61)
T 2k9s_A 8 EDQRISQAKLLLSTTRMPIATVGRNVG-FDDQLYFSRVFKKCTGAS 52 (61)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHTT-CCCHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHC-CCCHHHHHHHHHHHHCCC
T ss_conf 989999999988655751999999968-998999999999998919
No 286
>>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genomics, PSI-2, RHA08332, MCSG; 2.20A {Rhodococcus SP} (A:)
Probab=24.81 E-value=47 Score=15.01 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHHCCCCHHHH
Q ss_conf 18658899999678543466
Q gi|254780431|r 17 EGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 17 eG~SasqIA~~lGgvtRNAV 36 (178)
++.|-.+||++.| ||+.++
T Consensus 36 ~~~ti~~IA~~ag-vs~~ti 54 (207)
T 2rae_A 36 DATSVDEVAEASG-IARRTL 54 (207)
T ss_dssp TTSCHHHHHHHTT-SCHHHH
T ss_pred CCCCHHHHHHHHC-CCHHHH
T ss_conf 4178999998839-899999
No 287
>>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP} (A:1-86)
Probab=24.79 E-value=43 Score=15.31 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=21.0
Q ss_pred HHHHHHHH--HCCCCHHHHHHHHCCCCHHHH
Q ss_conf 99999999--818658899999678543466
Q gi|254780431|r 8 IDKLKKFW--SEGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 8 ve~LkkLW--~eG~SasqIA~~lGgvtRNAV 36 (178)
++.|.-|= ..+++.++||+.+| ++|..|
T Consensus 24 l~IL~~l~~~~~~~tl~eia~~lg-~~~st~ 53 (86)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATD-LTRATA 53 (86)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHT-CCHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHC-CCHHHH
T ss_conf 999999973799969999999979-399999
No 288
>>1eh6_A O6-alkylguanine-DNA alkyltransferase; methyltransferase, DNA repair; 2.00A {Homo sapiens} (A:83-156)
Probab=24.71 E-value=38 Score=15.61 Aligned_cols=40 Identities=23% Similarity=0.168 Sum_probs=26.3
Q ss_pred HHHHHHHHHH----HHCCCCHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 8999999999----981865889999967854346666777514
Q gi|254780431|r 5 VERIDKLKKF----WSEGLSASQIAVQLGGVTRNAVIGKLHRLF 44 (178)
Q Consensus 5 derve~LkkL----W~eG~SasqIA~~lGgvtRNAVIGK~hRLg 44 (178)
+-+.+.++.| +++-.|.+|||+.+|.-...-.+|.+-+.+
T Consensus 12 ~f~~~V~~~l~~Ip~G~~~TY~~iA~~~g~p~~~RaVg~A~~~N 55 (74)
T 1eh6_A 12 FTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGN 55 (74)
T ss_dssp HHHHHHHHHHHHCCTTCCEEHHHHHHHTTCTTCHHHHHHHTTSC
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 89999999995699975111999999968996599999999828
No 289
>>3ew0_A Mitoneet, CDGSH iron sulfur domain-containing protein 1; mitochondrial outer membrane, 2Fe-2S proteins, isotopic labeling, highyield expression; 1.40A {Homo sapiens} PDB: 2r13_A 2qd0_A 2qh7_A (A:)
Probab=24.63 E-value=39 Score=15.56 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=16.8
Q ss_pred CCCEECCCCCCCCCCCCHHHH
Q ss_conf 450047878768887716888
Q gi|254780431|r 140 KDFSFCGSDVCNDSPYCDYHK 160 (178)
Q Consensus 140 ~dF~FCG~~~~~g~PYC~~H~ 160 (178)
.+.+||-.-....+|||.--+
T Consensus 39 ~~~~~CrC~~S~~~P~CDGsH 59 (80)
T 3ew0_A 39 DKAVYCRCWRSKKFPFCDGAH 59 (80)
T ss_dssp SEEEECSSSCCTTTTBCCSHH
T ss_pred CCEEEEEEECCCCCCCCCCCH
T ss_conf 853799853258877566705
No 290
>>2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP} (A:1-75)
Probab=24.62 E-value=52 Score=14.74 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=21.2
Q ss_pred HHHHHHHHH--CCCCHHHHHHHHCCCCHHHHHHH
Q ss_conf 999999998--18658899999678543466667
Q gi|254780431|r 8 IDKLKKFWS--EGLSASQIAVQLGGVTRNAVIGK 39 (178)
Q Consensus 8 ve~LkkLW~--eG~SasqIA~~lGgvtRNAVIGK 39 (178)
++.|.-|=. .+++.++||+.+| ++|..|---
T Consensus 17 l~iL~~l~~~~~~~t~~eia~~~g-lp~stv~Rl 49 (75)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAG-LSRPAVRRI 49 (75)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHT-CCHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHC-CCHHHHHHH
T ss_conf 999999973799989999999979-199999999
No 291
>>3bqy_A Putative TETR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3} (A:)
Probab=24.27 E-value=50 Score=14.85 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHCCCCHHHH
Q ss_conf 18658899999678543466
Q gi|254780431|r 17 EGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 17 eG~SasqIA~~lGgvtRNAV 36 (178)
++.|-.+||++.| ||+.++
T Consensus 21 ~~~t~~~IA~~aG-vs~~tl 39 (209)
T 3bqy_A 21 DTLTXRRLAQAXD-VQAGAL 39 (209)
T ss_dssp GGCCHHHHHHHHT-SCHHHH
T ss_pred CCCCHHHHHHHHC-CCHHHH
T ss_conf 6353999999879-099799
No 292
>>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} (A:)
Probab=24.16 E-value=48 Score=15.01 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=13.5
Q ss_pred CHHHHHHHHCCCCHHHH
Q ss_conf 58899999678543466
Q gi|254780431|r 20 SASQIAVQLGGVTRNAV 36 (178)
Q Consensus 20 SasqIA~~lGgvtRNAV 36 (178)
|.+.+|+.|| ||.-||
T Consensus 12 ~~~~lA~~lg-vs~~aV 27 (61)
T 1rzs_A 12 TQRAVAKALG-ISDAAV 27 (61)
T ss_dssp SHHHHHHHHT-CCHHHH
T ss_pred CHHHHHHHHC-CCHHHH
T ss_conf 8999999929-999999
No 293
>>2uxu_A HTH-type transcriptional regulator TTGR; repressor protein, transcription regulation, multidrug binding protein; HET: NAR; 2.3A {Pseudomonas putida} PDB: 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A* (A:)
Probab=24.15 E-value=53 Score=14.68 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=17.4
Q ss_pred HHHHHHCC---CCHHHHHHHHCCCCHHHH
Q ss_conf 99999818---658899999678543466
Q gi|254780431|r 11 LKKFWSEG---LSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 11 LkkLW~eG---~SasqIA~~lGgvtRNAV 36 (178)
++-++.+| .|-.+||++.| ||+.+|
T Consensus 21 ~~l~~~~G~~~~si~~IA~~ag-vs~~ti 48 (210)
T 2uxu_A 21 ERAFYKRGVARTTLADIAELAG-VTRGAI 48 (210)
T ss_dssp HHHHHHHTTTTCCHHHHHHHHT-CCHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHC-CCCCHH
T ss_conf 9999985935288999999868-895437
No 294
>>2qib_A TETR-family transcriptional regulator; HTH DNA binding, structural genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3} (A:1-213)
Probab=23.91 E-value=54 Score=14.64 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHHCCCCHHHHH
Q ss_conf 186588999996785434666
Q gi|254780431|r 17 EGLSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 17 eG~SasqIA~~lGgvtRNAVI 37 (178)
++.|-.+||++.| ||+.++-
T Consensus 32 ~~~ti~~Ia~~ag-vs~~tiY 51 (213)
T 2qib_A 32 DEVSIDEIASAAG-ISRPLVY 51 (213)
T ss_dssp GGCCHHHHHHHHT-SCHHHHH
T ss_pred CCCCHHHHHHHHC-CCHHHHH
T ss_conf 4067999999979-4987999
No 295
>>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TETR family, PSI-2, protein structure initiative; 1.70A {Streptomyces coelicolor A3} (A:)
Probab=23.87 E-value=51 Score=14.82 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=19.8
Q ss_pred HHHHHHHH-HC---CCCHHHHHHHHCCCCHHHHH
Q ss_conf 99999999-81---86588999996785434666
Q gi|254780431|r 8 IDKLKKFW-SE---GLSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 8 ve~LkkLW-~e---G~SasqIA~~lGgvtRNAVI 37 (178)
++...+|. .+ |.|-.+||++.| ||+.+|-
T Consensus 35 l~aA~~l~~e~G~~~~si~~IA~~aG-vs~~tiY 67 (241)
T 2hxi_A 35 LDAAAELLLAGDAETFSVRKLAASLG-TDSSSLY 67 (241)
T ss_dssp HHHHHHHHSSSSCCCCCHHHHHHHTT-SCHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHHH
T ss_conf 99999999971923077999999979-1987999
No 296
>>2aj4_A Galactokinase; galactosemia, transcription, transferase; HET: GLA ANP; 2.40A {Saccharomyces cerevisiae} (A:288-436)
Probab=23.78 E-value=54 Score=14.62 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=19.5
Q ss_pred HHCCCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf 98186588999996785434666677
Q gi|254780431|r 15 WSEGLSASQIAVQLGGVTRNAVIGKL 40 (178)
Q Consensus 15 W~eG~SasqIA~~lGgvtRNAVIGK~ 40 (178)
-.+|+|..||++.|| +|.....-+.
T Consensus 86 ~~~gYT~eEi~~~Lg-is~~el~~~~ 110 (149)
T 2aj4_A 86 KKQGFSVDDVAQSLN-CSREEFTRDY 110 (149)
T ss_dssp GTTCBCHHHHHHHHT-CCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHC-CCHHHHHHHH
T ss_conf 023577888987504-5477766654
No 297
>>3bjb_A Probable transcriptional regulator, TETR family protein; APC7331, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodococcus SP} (A:)
Probab=23.75 E-value=52 Score=14.76 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=17.0
Q ss_pred HHHHHCC---CCHHHHHHHHCCCCHHHH
Q ss_conf 9999818---658899999678543466
Q gi|254780431|r 12 KKFWSEG---LSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 12 kkLW~eG---~SasqIA~~lGgvtRNAV 36 (178)
+-|+.+| .|-.+||++.| ||+.+|
T Consensus 33 ~l~~~~G~~~~si~~Ia~~ag-vs~~ti 59 (207)
T 3bjb_A 33 ELATEKELARVQXHEVAKRAG-VAIGTL 59 (207)
T ss_dssp HHHHHSCGGGCCHHHHHHHHT-CCHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHC-CCCCHH
T ss_conf 999973913066999999868-391206
No 298
>>3he0_A Transcriptional regulator, TETR family; ACRR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus} (A:)
Probab=23.60 E-value=55 Score=14.60 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=17.9
Q ss_pred HHHHHHH-HC---CCCHHHHHHHHCCCCHHHH
Q ss_conf 9999999-81---8658899999678543466
Q gi|254780431|r 9 DKLKKFW-SE---GLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 9 e~LkkLW-~e---G~SasqIA~~lGgvtRNAV 36 (178)
+...+|. .+ +.|-.+||++.| ||+.++
T Consensus 18 ~aa~~l~~~~G~~~~ti~~IA~~ag-vs~~ti 48 (196)
T 3he0_A 18 AAAEQLIAESGFQGLSXQKLANEAG-VAAGTI 48 (196)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHHT-SCHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHCC-CCCCCC
T ss_conf 9999999973913067999999809-997865
No 299
>>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} (A:)
Probab=23.54 E-value=55 Score=14.59 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=23.1
Q ss_pred HHHHHHH----CCCCHHHHHHHHCCCCH---HHHHHHHHHHCCCCC
Q ss_conf 9999998----18658899999678543---466667775145544
Q gi|254780431|r 10 KLKKFWS----EGLSASQIAVQLGGVTR---NAVIGKLHRLFLSNR 48 (178)
Q Consensus 10 ~LkkLW~----eG~SasqIA~~lGgvtR---NAVIGK~hRLgLs~R 48 (178)
.|.-|-. ++.+|-+||++|| ++| |.++=+..+-|...+
T Consensus 19 Il~~L~~~~~g~~~tA~~LAk~lg-~~Kk~vN~~LY~L~k~g~v~~ 63 (77)
T 1qgp_A 19 ILKFLEELGEGKATTAHDLSGKLG-TPKKEINRVLYSLAKKGKLQK 63 (77)
T ss_dssp HHHHHHHHCSSSCEEHHHHHHHHC-CCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEE
T ss_conf 999999658987602999999969-888888999999998789530
No 300
>>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, metal transport, zinc, iron, repressor, cytoplasm, DNA-binding; 2.60A {Vibrio cholerae} (A:1-85)
Probab=23.51 E-value=55 Score=14.59 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHH-CC--CCHHHHHHHHC----CCCHHHH---HHHHHHHCCCCCC
Q ss_conf 777899999999998-18--65889999967----8543466---6677751455445
Q gi|254780431|r 2 VWTVERIDKLKKFWS-EG--LSASQIAVQLG----GVTRNAV---IGKLHRLFLSNRV 49 (178)
Q Consensus 2 sWTderve~LkkLW~-eG--~SasqIA~~lG----gvtRNAV---IGK~hRLgLs~R~ 49 (178)
-.|..|...|+-|+. +| +||.||-..|. .+++-.| +.-...+|+-.+.
T Consensus 14 r~T~~R~~il~~l~~~~~~~~sa~~i~~~l~~~~~~is~~TVYR~L~~l~~~g~v~~~ 71 (85)
T 2w57_A 14 KVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRH 71 (85)
T ss_dssp CCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEE
T ss_conf 9898999999999828999999999999998608885789999999999967848999
No 301
>>3knw_A Putative transcriptional regulator (TETR/ACRR family); TETR-like protein, MCSG, PSI, structural genomics, protein structure initiative; 2.45A {Acinetobacter SP} (A:)
Probab=23.49 E-value=55 Score=14.59 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=15.6
Q ss_pred CCCCHHHHHHHHCCCCHHHHH
Q ss_conf 186588999996785434666
Q gi|254780431|r 17 EGLSASQIAVQLGGVTRNAVI 37 (178)
Q Consensus 17 eG~SasqIA~~lGgvtRNAVI 37 (178)
++.|-.+||+..| ||+.++-
T Consensus 33 ~~~t~~~IA~~ag-vs~~tiY 52 (212)
T 3knw_A 33 VGVGLQEILKTSG-VPKGSFY 52 (212)
T ss_dssp TTCCHHHHHHHHT-CCHHHHH
T ss_pred CCCCHHHHHHHHC-CCHHHHH
T ss_conf 5288999999979-0999998
No 302
>>1out_B Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} (B:)
Probab=23.40 E-value=55 Score=14.58 Aligned_cols=28 Identities=14% Similarity=0.363 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 97778999999999981865889999967
Q gi|254780431|r 1 MVWTVERIDKLKKFWSEGLSASQIAVQLG 29 (178)
Q Consensus 1 MsWTderve~LkkLW~eG~SasqIA~~lG 29 (178)
|+.|++-++.+++-|.. +...+++..+-
T Consensus 1 m~Lt~~e~~li~~sW~~-v~~~~~g~~~~ 28 (146)
T 1out_B 1 VEWTDAEKSTISAVWGK-VNIDEIGPLAL 28 (146)
T ss_dssp CCCCHHHHHHHHHHHHT-CCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_conf 98989999999999835-78367999999
No 303
>>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.40A {Rhodococcus SP} (A:)
Probab=23.38 E-value=52 Score=14.73 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=18.6
Q ss_pred HHHHHHH-HHC---CCCHHHHHHHHCCCCHHHH
Q ss_conf 9999999-981---8658899999678543466
Q gi|254780431|r 8 IDKLKKF-WSE---GLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 8 ve~LkkL-W~e---G~SasqIA~~lGgvtRNAV 36 (178)
++...+| ..+ +.|-.+||++.| ||+.+|
T Consensus 20 l~aa~~l~~~~G~~~~t~~~Ia~~ag-vs~~ti 51 (203)
T 3f1b_A 20 LDAAVDVFSDRGFHETSXDAIAAKAE-ISKPXL 51 (203)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHTT-SCHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHH
T ss_conf 99999999972934177999999989-098899
No 304
>>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor} (A:)
Probab=23.24 E-value=56 Score=14.56 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=17.0
Q ss_pred HHHHHC---CCCHHHHHHHHCCCCHHHH
Q ss_conf 999981---8658899999678543466
Q gi|254780431|r 12 KKFWSE---GLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 12 kkLW~e---G~SasqIA~~lGgvtRNAV 36 (178)
+-+..+ +.|-.+||++.| ||+.++
T Consensus 34 ~l~~~~G~~~~si~~IA~~ag-vs~~t~ 60 (231)
T 2zcx_A 34 ELGTERGIREITLTDIAATVG-MHKSAL 60 (231)
T ss_dssp HHHHHHCSTTCCHHHHHHHHT-SCHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHC-CCHHHH
T ss_conf 999970954077999999969-598999
No 305
>>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} (A:1-93)
Probab=23.23 E-value=56 Score=14.55 Aligned_cols=42 Identities=12% Similarity=0.048 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHC-------CCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 7778999999999981-------86588999996785434666677751
Q gi|254780431|r 2 VWTVERIDKLKKFWSE-------GLSASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 2 sWTderve~LkkLW~e-------G~SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
.||+|--++|..|-.+ +..-..||..|++-|...+--.-++.
T Consensus 10 ~WT~eED~~L~~~v~~~g~~~~~~~~W~~ia~~~~~Rs~~qcr~Rw~~~ 58 (93)
T 1ign_A 10 SFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVY 58 (93)
T ss_dssp CCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 6566314589999861976433055678776437677773055778887
No 306
>>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* 1rpw_A* ... (B:1-71)
Probab=23.17 E-value=53 Score=14.69 Aligned_cols=25 Identities=8% Similarity=0.130 Sum_probs=18.3
Q ss_pred HHHHHHC---CCCHHHHHHHHCCCCHHHH
Q ss_conf 9999981---8658899999678543466
Q gi|254780431|r 11 LKKFWSE---GLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 11 LkkLW~e---G~SasqIA~~lGgvtRNAV 36 (178)
+.-|+.+ +.|-.+||++.| ||+..+
T Consensus 12 ~~l~~~~G~~~~t~~~Ia~~ag-is~~t~ 39 (71)
T 3bqz_B 12 KELFIKNGYNATTTGEIVKLSE-SSKGNL 39 (71)
T ss_dssp HHHHHHHTTTTCCHHHHHHHTT-CCHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHC-CCHHHH
T ss_conf 9999975915177999999879-098888
No 307
>>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution; 1.40A {Xylella fastidiosa ann-1} (A:)
Probab=23.06 E-value=51 Score=14.78 Aligned_cols=28 Identities=29% Similarity=0.170 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 86588999996785434666677751455
Q gi|254780431|r 18 GLSASQIAVQLGGVTRNAVIGKLHRLFLS 46 (178)
Q Consensus 18 G~SasqIA~~lGgvtRNAVIGK~hRLgLs 46 (178)
==|.++.|+.|| ||..+|=.=+++-.++
T Consensus 11 ~G~q~~lA~~~G-vs~~aV~~w~~g~~ip 38 (79)
T 3bd1_A 11 LGSVSALAASLG-VRQSAISNWRARGRVP 38 (79)
T ss_dssp HSSHHHHHHHHT-CCHHHHHHHHHHTCCC
T ss_pred HCCHHHHHHHHC-CCHHHHHHHHCCCCCC
T ss_conf 589999999919-9899999988069999
No 308
>>1b8t_A Protein (CRP1); LIM domain, muscle differentiation; NMR {Gallus gallus} (A:91-192)
Probab=23.04 E-value=32 Score=16.11 Aligned_cols=21 Identities=10% Similarity=0.022 Sum_probs=16.5
Q ss_pred CCCCCCCCHHHHHHHCCCCCC
Q ss_conf 768887716888887057751
Q gi|254780431|r 149 VCNDSPYCDYHKKLAYQRVND 169 (178)
Q Consensus 149 ~~~g~PYC~~H~~iAYQP~~~ 169 (178)
..+|.+||..|....|.|.=.
T Consensus 69 ~~~~~~yC~~cy~~~~~~~C~ 89 (102)
T 1b8t_A 69 DKDGEIYCKGCYAKNFGPKGF 89 (102)
T ss_dssp EETTEEEEHHHHHHHTCCCCC
T ss_pred EECCEEECHHHHHHHCCCCCC
T ss_conf 179978897786766170476
No 309
>>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A (A:)
Probab=22.84 E-value=41 Score=15.44 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCCHH
Q ss_conf 7899999999998186588999996785434
Q gi|254780431|r 4 TVERIDKLKKFWSEGLSASQIAVQLGGVTRN 34 (178)
Q Consensus 4 Tderve~LkkLW~eG~SasqIA~~lGgvtRN 34 (178)
.+.||+-|+ .+||+..+|-..|+ .++|
T Consensus 35 ~~~K~~FL~---sKGLt~~EI~~al~-ra~~ 61 (70)
T 2w84_A 35 LATRRAFLK---KKGLTDEEIDMAFQ-QSGT 61 (70)
T ss_dssp HHHHHHHHH---HTTCCHHHHHHHHH-HHTC
T ss_pred HHHHHHHHH---HCCCCHHHHHHHHH-HHCC
T ss_conf 899999999---75999999999999-8265
No 310
>>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 1.70A {Rhodococcus SP} (A:)
Probab=22.63 E-value=57 Score=14.48 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=18.4
Q ss_pred HHHHHHHH-H---CCCCHHHHHHHHCCCCHHHH
Q ss_conf 99999999-8---18658899999678543466
Q gi|254780431|r 8 IDKLKKFW-S---EGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 8 ve~LkkLW-~---eG~SasqIA~~lGgvtRNAV 36 (178)
++...+|. . ++.|-.+||++.| ||+.++
T Consensus 16 l~aa~~l~~~~G~~~~si~~Ia~~ag-vs~~t~ 47 (194)
T 2nx4_A 16 TAAAWRLIAARGIEAANMRDIATEAG-YTNGAL 47 (194)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHHT-CCHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHC-CCHHHH
T ss_conf 99999999975925065999999979-099888
No 311
>>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822} (A:)
Probab=22.52 E-value=57 Score=14.46 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=17.7
Q ss_pred HHHHHHCC---CCHHHHHHHHCCCCHHHH
Q ss_conf 99999818---658899999678543466
Q gi|254780431|r 11 LKKFWSEG---LSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 11 LkkLW~eG---~SasqIA~~lGgvtRNAV 36 (178)
++-++.+| .|-.+||++.| ||+.++
T Consensus 24 ~~l~~~~G~~~~ti~~Ia~~ag-vs~~ti 51 (203)
T 3ccy_A 24 AAXFARQGYSETSIGDIARACE-CSKSRL 51 (203)
T ss_dssp HHHHHHTCTTTSCHHHHHHHTT-CCGGGG
T ss_pred HHHHHHHCCCCCCHHHHHHHHC-CCCCCH
T ss_conf 9999972955187999999858-294304
No 312
>>3dew_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.75A {Geobacter sulfurreducens} (A:1-72)
Probab=22.29 E-value=58 Score=14.43 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=15.7
Q ss_pred HCCCCHHHHHHHHCCCCHHHH
Q ss_conf 818658899999678543466
Q gi|254780431|r 16 SEGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 16 ~eG~SasqIA~~lGgvtRNAV 36 (178)
-+++|-.+||+++| ||+..+
T Consensus 26 ~~~~t~~~ia~~~g-vs~~~~ 45 (72)
T 3dew_A 26 FYGVSIRELAQAAG-ASISXI 45 (72)
T ss_dssp GGGCCHHHHHHHHT-CCHHHH
T ss_pred CCCCCHHHHHHHHC-CCHHHH
T ss_conf 24177999999969-399999
No 313
>>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} (A:118-202)
Probab=22.25 E-value=57 Score=14.49 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=20.7
Q ss_pred CCHHHHHHHHCCCCHH---HHHHHHHHHCCCCC
Q ss_conf 6588999996785434---66667775145544
Q gi|254780431|r 19 LSASQIAVQLGGVTRN---AVIGKLHRLFLSNR 48 (178)
Q Consensus 19 ~SasqIA~~lGgvtRN---AVIGK~hRLgLs~R 48 (178)
+|-.+||..|| +||- -+|.+--+.|+-..
T Consensus 30 lt~~~lA~~lg-~sr~tvsr~L~~L~~~glI~~ 61 (85)
T 2zcw_A 30 ATHDELAAAVG-SVRETVTKVIGELAREGYIRS 61 (85)
T ss_dssp CCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEEE
T ss_conf 98999998879-889999999999998899996
No 314
>>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} (A:1-42)
Probab=22.24 E-value=57 Score=14.47 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 86588999996785434666677751455
Q gi|254780431|r 18 GLSASQIAVQLGGVTRNAVIGKLHRLFLS 46 (178)
Q Consensus 18 G~SasqIA~~lGgvtRNAVIGK~hRLgLs 46 (178)
.+|.+|+|+.+| ||..+| =-=.+.||-
T Consensus 2 ~~~I~evA~~~g-vs~~tl-R~ye~~Gll 28 (42)
T 1r8d_A 2 KYQVKQVAEISG-VSIRTL-HHYDNIELL 28 (42)
T ss_dssp CBCHHHHHHHHS-CCHHHH-HHHHHTTSS
T ss_pred CCCHHHHHHHHC-CCHHHH-HHHHHCCCC
T ss_conf 611999999989-599999-999876898
No 315
>>2vke_A Tetracycline repressor protein class D; transcription, metal-binding, helix-turn-helix, transcription regulator, transcription regulation; HET: TAC; 1.62A {Escherichia coli} (A:1-67)
Probab=22.23 E-value=58 Score=14.43 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=15.8
Q ss_pred HCCCCHHHHHHHHCCCCHHHH
Q ss_conf 818658899999678543466
Q gi|254780431|r 16 SEGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 16 ~eG~SasqIA~~lGgvtRNAV 36 (178)
-++.|..+||+++| ||+-++
T Consensus 21 ~~~~t~~~Ia~~~g-vs~~~~ 40 (67)
T 2vke_A 21 IDGLTTRKLAQKLG-IEQPTL 40 (67)
T ss_dssp CGGGCCHHHHHHHH-TCCHHH
T ss_pred CCCCCCHHHHHHHH-CCCHHH
T ss_conf 93417899999998-909769
No 316
>>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.70A {Streptomyces coelicolor} (A:)
Probab=22.17 E-value=58 Score=14.43 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHCCCCHHHH
Q ss_conf 18658899999678543466
Q gi|254780431|r 17 EGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 17 eG~SasqIA~~lGgvtRNAV 36 (178)
++.|-.+||++.| ||+.++
T Consensus 59 ~~~ti~~Ia~~ag-vs~~ti 77 (225)
T 2id3_A 59 DALDLGEIARRAG-VGKTTV 77 (225)
T ss_dssp GGCCHHHHHHHHT-CCHHHH
T ss_pred CCCCHHHHHHHHC-CCCCCC
T ss_conf 4077999999818-996641
No 317
>>3dv8_A Transcriptional regulator, CRP/FNR family; RER070207001219, structural genomics, joint center for structural genomics, JCSG; 2.55A {Eubacterium rectale atcc 33656} (A:147-220)
Probab=22.02 E-value=59 Score=14.40 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=19.1
Q ss_pred CCHHHHHHHHCCCCHHHHH---HHHHHHCCC
Q ss_conf 6588999996785434666---677751455
Q gi|254780431|r 19 LSASQIAVQLGGVTRNAVI---GKLHRLFLS 46 (178)
Q Consensus 19 ~SasqIA~~lGgvtRNAVI---GK~hRLgLs 46 (178)
+|-.+||..|| +||..|- .+-.+.|+=
T Consensus 24 ~t~~~lA~~lg-~sr~tvsr~L~~l~~~g~I 53 (74)
T 3dv8_A 24 ITHETIANHLG-SHREVITRXLRYFQVEGLV 53 (74)
T ss_dssp CCHHHHHHHHT-CCHHHHHHHHHHHHHTTSE
T ss_pred CCHHHHHHHHC-CCHHHHHHHHHHHHHCCCE
T ss_conf 44999999979-8999999999999988989
No 318
>>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (C:239-340)
Probab=21.96 E-value=59 Score=14.39 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=20.9
Q ss_pred HHHHHHHHHHH-HCCCCHHHHHHHHCC
Q ss_conf 89999999999-818658899999678
Q gi|254780431|r 5 VERIDKLKKFW-SEGLSASQIAVQLGG 30 (178)
Q Consensus 5 derve~LkkLW-~eG~SasqIA~~lGg 30 (178)
++-.+.+.+|| .+|+|+.+|=.+|-.
T Consensus 19 ~~a~~~v~~l~~~~G~s~~dIl~~l~~ 45 (102)
T 1sxj_C 19 GTAHYTLNKVRSAKGLALIDLIEGIVK 45 (102)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 999999999998469999999999999
No 319
>>3jsj_A Putative TETR-family transcriptional regulator; NP_821317.1, putative transcriptional regulator, structural genomics; 2.10A {Streptomyces avermitilis ma-4680} (A:)
Probab=21.95 E-value=59 Score=14.39 Aligned_cols=25 Identities=12% Similarity=0.353 Sum_probs=17.8
Q ss_pred HHHHHHCC--CCHHHHHHHHCCCCHHHH
Q ss_conf 99999818--658899999678543466
Q gi|254780431|r 11 LKKFWSEG--LSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 11 LkkLW~eG--~SasqIA~~lGgvtRNAV 36 (178)
++-++.+| .|-.+||++.| ||+.++
T Consensus 19 ~~l~~~~G~~~t~~~IA~~ag-vs~~ti 45 (190)
T 3jsj_A 19 AALTYRDGVGIGVEALCKAAG-VSKRSX 45 (190)
T ss_dssp HHHHHHHCTTCCHHHHHHHHT-CCHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHC-CCCCCH
T ss_conf 999998696785999999978-982300
No 320
>>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcription regulator; HET: TDC; 2.49A {Pasteurella multocida} (A:1-68)
Probab=21.94 E-value=59 Score=14.39 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=18.5
Q ss_pred HHHHHH---CCCCHHHHHHHHCCCCHHHH
Q ss_conf 999998---18658899999678543466
Q gi|254780431|r 11 LKKFWS---EGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 11 LkkLW~---eG~SasqIA~~lGgvtRNAV 36 (178)
++-+|. ++.|..+||+++| ||+.++
T Consensus 14 ~~l~~~~G~~~~t~~~Ia~~~g-vs~~~~ 41 (68)
T 2vpr_A 14 LILLNEVGIEGLTTRKLAQKIG-VEQPTL 41 (68)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHT-CCHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHC-CCHHHH
T ss_conf 9999973935178999999979-198799
No 321
>>1dec_A Decorsin; blood coagulation; NMR {Macrobdella decora} (A:)
Probab=21.93 E-value=30 Score=16.33 Aligned_cols=13 Identities=31% Similarity=0.772 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 8432005578998
Q gi|254780431|r 126 TDNTCKWPLGDPF 138 (178)
Q Consensus 126 te~tCkWPiGDP~ 138 (178)
....||+|-||-+
T Consensus 23 ppgqcrfprgdad 35 (39)
T 1dec_A 23 PPGQCRFPRGDAD 35 (39)
T ss_dssp CTTCEECCSSSCC
T ss_pred CCCCCCCCCCCCC
T ss_conf 8753546678878
No 322
>>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV} (A:1-51)
Probab=21.79 E-value=59 Score=14.39 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=17.5
Q ss_pred HHHHHHC---CCCHHHHHHHHCCCCHHHH
Q ss_conf 9999981---8658899999678543466
Q gi|254780431|r 11 LKKFWSE---GLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 11 LkkLW~e---G~SasqIA~~lGgvtRNAV 36 (178)
++-++.+ +.|-.+||++.| |++-++
T Consensus 19 ~~lf~~~G~~~~s~~~Ia~~aG-vs~g~i 46 (51)
T 3cdl_A 19 IAEFGDRGFEITSXDRIAARAE-VSKRTV 46 (51)
T ss_dssp HHHHHHHCTTTCCHHHHHHHTT-SCHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHC-CCCCCH
T ss_conf 9999974925188999999868-896614
No 323
>>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiative, PSI, midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} (A:)
Probab=21.63 E-value=60 Score=14.35 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=17.9
Q ss_pred HHHHHHH-H---CCCCHHHHHHHHCCCCHHHH
Q ss_conf 9999999-8---18658899999678543466
Q gi|254780431|r 9 DKLKKFW-S---EGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 9 e~LkkLW-~---eG~SasqIA~~lGgvtRNAV 36 (178)
+...+|. . +|.|-.+||++.| ||+.++
T Consensus 26 ~aA~~l~~~~G~~~~ti~~IA~~ag-vs~~t~ 56 (243)
T 2g7l_A 26 DTAVALXRAEGLEKVTXRRLAQELD-TGPASL 56 (243)
T ss_dssp HHHHHHHHHHCSSSCCHHHHHHHTT-SCHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHC-CCCCCC
T ss_conf 9999999972952078999998708-786651
No 324
>>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structure initiative; 2.01A {Rhodococcus SP} (A:)
Probab=21.48 E-value=60 Score=14.33 Aligned_cols=28 Identities=11% Similarity=0.237 Sum_probs=19.9
Q ss_pred HHHHHHHH-HC-CCCHHHHHHHHCCCCHHHH
Q ss_conf 99999999-81-8658899999678543466
Q gi|254780431|r 8 IDKLKKFW-SE-GLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 8 ve~LkkLW-~e-G~SasqIA~~lGgvtRNAV 36 (178)
++...+|. .+ +.|..+||++.| ||+.++
T Consensus 17 l~aA~~lf~e~G~~s~~~IA~~ag-vs~~t~ 46 (213)
T 2g7g_A 17 AEAALELVDRDGDFRXPDLARHLN-VQVSSI 46 (213)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHTT-SCHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHC-CCHHHH
T ss_conf 999999999729960999999969-285444
No 325
>>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} (A:1-176,A:396-479)
Probab=21.43 E-value=35 Score=15.91 Aligned_cols=10 Identities=40% Similarity=0.906 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q ss_conf 4666677751
Q gi|254780431|r 34 NAVIGKLHRL 43 (178)
Q Consensus 34 NAVIGK~hRL 43 (178)
|||+|-+|||
T Consensus 178 ~~~~~~~~~~ 187 (260)
T 2nvw_A 178 NSVVGNILRI 187 (260)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 0577789999
No 326
>>3crj_A Transcription regulator; APC88200, TETR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049} (A:)
Probab=21.08 E-value=61 Score=14.28 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=17.0
Q ss_pred HHHHHCC---CCHHHHHHHHCCCCHHHH
Q ss_conf 9999818---658899999678543466
Q gi|254780431|r 12 KKFWSEG---LSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 12 kkLW~eG---~SasqIA~~lGgvtRNAV 36 (178)
+-++.+| .|-.+||++.| ||+.++
T Consensus 25 ~l~~~~G~~~~si~~IA~~ag-vs~~t~ 51 (199)
T 3crj_A 25 RALREHGYADLTIQRIADEYG-KSTAAV 51 (199)
T ss_dssp HHHHHHTTTTCCHHHHHHHHT-SCHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHC-CCHHHH
T ss_conf 999973925188999999979-199999
No 327
>>2qko_A Possible transcriptional regulator, TETR family protein; structural genomics, PSI-2, protein structure initiative; 2.35A {Rhodococcus SP} (A:)
Probab=21.07 E-value=48 Score=14.95 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=16.5
Q ss_pred HHHHC---CCCHHHHHHHHCCCCHHHH
Q ss_conf 99981---8658899999678543466
Q gi|254780431|r 13 KFWSE---GLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 13 kLW~e---G~SasqIA~~lGgvtRNAV 36 (178)
-++.+ +.|-.+||++.| ||+.++
T Consensus 40 l~~~~G~~~~ti~~Ia~~ag-vs~~tl 65 (215)
T 2qko_A 40 VLAREGARGLTFRAVDVEAN-VPKGTA 65 (215)
T ss_dssp HHHHTCTTTCCHHHHHHHSS-STTTCH
T ss_pred HHHHHCCCCCCHHHHHHHHC-CCCCEE
T ss_conf 99983923078999999968-996840
No 328
>>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor A3} (A:)
Probab=20.92 E-value=62 Score=14.25 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=18.7
Q ss_pred HHHHHHHH-H---CCCCHHHHHHHHCCCCHHHH
Q ss_conf 99999999-8---18658899999678543466
Q gi|254780431|r 8 IDKLKKFW-S---EGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 8 ve~LkkLW-~---eG~SasqIA~~lGgvtRNAV 36 (178)
++...+|- . ++.|-.+||++.| ||+..|
T Consensus 15 l~aa~~l~~~~G~~~~ti~~IA~~ag-vs~~t~ 46 (215)
T 1ui5_A 15 IGAAADLFDRRGYESTTLSEIVAHAG-VTKGAL 46 (215)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHHT-CCHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHC-CCCCCH
T ss_conf 99999999984945288999999868-894508
No 329
>>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TETR family, rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} (A:)
Probab=20.70 E-value=58 Score=14.42 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=18.0
Q ss_pred HHHHHHH-H--CCCCHHHHHHHHCCCCHHHH
Q ss_conf 9999999-8--18658899999678543466
Q gi|254780431|r 9 DKLKKFW-S--EGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 9 e~LkkLW-~--eG~SasqIA~~lGgvtRNAV 36 (178)
+...+|. . .|.|-.+||++.| ||+.++
T Consensus 27 ~aA~~l~~~~G~~~si~~IA~~ag-vs~~ti 56 (215)
T 2hku_A 27 TAATELFLEHGEGVPITQICAAAG-AHPNQV 56 (215)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHT-CCHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHC-CCCCCH
T ss_conf 999999998586785999999865-221411
No 330
>>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} (C:148-250)
Probab=20.62 E-value=63 Score=14.21 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=19.6
Q ss_pred CCHHHHHHHHCCCCHHHH---HHHHHHHCCCC
Q ss_conf 658899999678543466---66777514554
Q gi|254780431|r 19 LSASQIAVQLGGVTRNAV---IGKLHRLFLSN 47 (178)
Q Consensus 19 ~SasqIA~~lGgvtRNAV---IGK~hRLgLs~ 47 (178)
+|-.+||..|| +||-.| |.+..+-|+-.
T Consensus 31 lt~~~LA~~lG-~sr~tvsr~l~~L~~~giI~ 61 (103)
T 3e6c_C 31 LSQKSIGEITG-VHHVTVSRVLASLKRENILD 61 (103)
T ss_dssp CCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEE
T ss_conf 68999998979-98999999999999889899
No 331
>>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3} (A:)
Probab=20.59 E-value=63 Score=14.21 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHCCCCHHHH
Q ss_conf 18658899999678543466
Q gi|254780431|r 17 EGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 17 eG~SasqIA~~lGgvtRNAV 36 (178)
++.|-.+||++.| ||+.++
T Consensus 54 ~~~ti~~IA~~ag-vs~~ti 72 (221)
T 3g7r_A 54 HSVGIDRITAEAQ-VTRATL 72 (221)
T ss_dssp TTSCHHHHHHHHT-CCHHHH
T ss_pred CCCCHHHHHHHHC-CCCCCH
T ss_conf 5074999999878-996841
No 332
>>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus} (A:1-60)
Probab=20.37 E-value=63 Score=14.18 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=18.9
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCHHHH
Q ss_conf 999999818658899999678543466
Q gi|254780431|r 10 KLKKFWSEGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 10 ~LkkLW~eG~SasqIA~~lGgvtRNAV 36 (178)
+|.+-=-+++|-.+||++.| ||+-++
T Consensus 26 l~~~~G~~~~s~~~Ia~~ag-vs~~t~ 51 (60)
T 3ljl_A 26 QLLRLGYDKXSYTTLSQQTG-VSRTGI 51 (60)
T ss_dssp HHHHTHHHHCCHHHHHHHHT-CCHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHC-CCHHHH
T ss_conf 99871902077999999868-886089
No 333
>>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1} (A:1-106)
Probab=20.34 E-value=64 Score=14.18 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=21.4
Q ss_pred CHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 588999996785434666677751455
Q gi|254780431|r 20 SASQIAVQLGGVTRNAVIGKLHRLFLS 46 (178)
Q Consensus 20 SasqIA~~lGgvtRNAVIGK~hRLgLs 46 (178)
|-+++|+++| ||||.|--=...|--.
T Consensus 37 s~~~La~~~~-vSr~tvr~Al~~L~~~ 62 (106)
T 3by6_A 37 SVRETALQEK-INPNTVAKAYKELEAQ 62 (106)
T ss_dssp CHHHHHHHHT-CCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHC-CCHHHHHHHHHHHHHC
T ss_conf 4999999969-8989999999999978
No 334
>>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} (A:1-47)
Probab=20.34 E-value=21 Score=17.28 Aligned_cols=11 Identities=0% Similarity=-0.242 Sum_probs=7.3
Q ss_pred CCCCCCHHHHH
Q ss_conf 88877168888
Q gi|254780431|r 151 NDSPYCDYHKK 161 (178)
Q Consensus 151 ~g~PYC~~H~~ 161 (178)
+|++||+.|..
T Consensus 2 Dg~~yC~~~y~ 12 (47)
T 2dlo_A 2 SSGSSGEGCYV 12 (47)
T ss_dssp CCCCCCCCCCC
T ss_pred CCCCCCHHHHH
T ss_conf 88876463560
No 335
>>2o7t_A Transcriptional regulator; NP_600854.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 2.10A {Corynebacterium glutamicum} (A:1-50)
Probab=20.25 E-value=64 Score=14.16 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=16.3
Q ss_pred HCCCCHHHHHHHHCCCCHHHH
Q ss_conf 818658899999678543466
Q gi|254780431|r 16 SEGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 16 ~eG~SasqIA~~lGgvtRNAV 36 (178)
-++.|-++||++.| ||+-+|
T Consensus 26 ~~~~s~~~Ia~~ag-vs~~~~ 45 (50)
T 2o7t_A 26 HDSLTXENIAEQAG-VGVATL 45 (50)
T ss_dssp GGGCCHHHHHHHHT-CCHHHH
T ss_pred CCCCCHHHHHHHHC-CCCCCH
T ss_conf 14077999999858-894421
No 336
>>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} (A:15-79)
Probab=20.23 E-value=64 Score=14.16 Aligned_cols=33 Identities=21% Similarity=0.549 Sum_probs=27.6
Q ss_pred HHHHHHHCCC---CHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999998186---588999996785434666677751
Q gi|254780431|r 10 KLKKFWSEGL---SASQIAVQLGGVTRNAVIGKLHRL 43 (178)
Q Consensus 10 ~LkkLW~eG~---SasqIA~~lGgvtRNAVIGK~hRL 43 (178)
.|...+.+|. |-.+||+.+| +|-+.|.--.|+|
T Consensus 26 ql~~~~~~g~~fPs~~~La~~m~-~s~~~i~~~l~~L 61 (65)
T 2vn2_A 26 HMQSFFEEGVLFPTPAELAERMT-VSAAECMEMVRRL 61 (65)
T ss_dssp HHHHHHTTTCSSCCHHHHHHTSS-SCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf 99999876999999999998969-7999999999999
No 337
>>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} (A:1-77)
Probab=20.07 E-value=64 Score=14.14 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=19.7
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCCHHHH
Q ss_conf 9999999818658899999678543466
Q gi|254780431|r 9 DKLKKFWSEGLSASQIAVQLGGVTRNAV 36 (178)
Q Consensus 9 e~LkkLW~eG~SasqIA~~lGgvtRNAV 36 (178)
+++.+-=-+++|-.+|++++| ||++++
T Consensus 16 ~l~~~~G~~~~ti~~ia~~ag-vs~~~~ 42 (77)
T 2id6_A 16 EVFGKKGYDRATTDEIAEKAG-VAKGLI 42 (77)
T ss_dssp HHHHHHHHHHCCHHHHHHHHT-CCTHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHC-CCHHHH
T ss_conf 999872914067999999879-099999
No 338
>>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A (A:226-319)
Probab=20.06 E-value=64 Score=14.14 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=22.5
Q ss_pred HHHHHHHHHHH-HCCCCHHHHHHHHCCCCHH
Q ss_conf 89999999999-8186588999996785434
Q gi|254780431|r 5 VERIDKLKKFW-SEGLSASQIAVQLGGVTRN 34 (178)
Q Consensus 5 derve~LkkLW-~eG~SasqIA~~lGgvtRN 34 (178)
++-.+.+.+|| .+|+|+.+|-.+|-.+-.|
T Consensus 19 ~~a~~~i~~l~~~~G~s~~dil~~l~~~v~~ 49 (94)
T 2chq_A 19 MEARELLDRLMVEYGMSGEDIVAQLFREIIS 49 (94)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 8889999999997499999999999999985
Done!