HHsearch results for GI: 254780431 and protein with PDBid: 1u78_A

>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2

Probab=94.96  E-value=0.027  Score=35.27  Aligned_cols=39  Identities=10%  Similarity=0.084  Sum_probs=33.0

Q ss_pred             CCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             7789999999999818658899999678543466667775
Q gi|254780431|r    3 WTVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHR   42 (178)
Q Consensus         3 WTderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hR   42 (178)
                      +|+|.-...-.|..+|+|.++||++|| ++++.|-.=.-+
T Consensus         7 lt~~~R~~I~~l~~~G~s~~~IAk~lg-~s~stV~r~lk~   45 (141)
T 1u78_A            7 LSDTERAQLDVMKLLNVSLHEMSRKIS-RSRHCIRVYLKD   45 (141)
T ss_dssp             CCHHHHHHHHHHHHTTCCHHHHHHHHT-CCHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHH
T ss_conf             999999999999997999999999989-578999999997