HHSEARCH alignment of GI: 254780431 and SCOP domain: d1xsva_

Alignment
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
Probab=92.58  E-value=0.087  Score=30.38  Aligned_cols=34  Identities=35%  Similarity=0.489  Sum_probs=27.4

Q ss_pred             HHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             99999998186588999996785434666677751
Q gi|254780431|r    9 DKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL   43 (178)
Q Consensus         9 e~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL   43 (178)
                      +.+.--.-+|+|.+|||..|| +|++||=.-.||-
T Consensus        25 ~vl~L~~~e~ls~~EIA~~lg-iS~~aV~~~l~Ra   58 (106)
T d1xsva_          25 NYLELFYLEDYSLSEIADTFN-VSRQAVYDNIRRT   58 (106)
T ss_dssp             HHHHHHHTSCCCHHHHHHHTT-CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf             999999990875999999989-5999999999999


SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors
family: YlxM/p13-like
domain: Hypothetical protein SAV1236
species: Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]