RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780431|ref|YP_003064844.1| hypothetical protein CLIBASIA_01580 [Candidatus Liberibacter asiaticus str. psy62] (178 letters) >gnl|CDD|34927 COG5352, COG5352, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 169 Score = 153 bits (388), Expect = 2e-38 Identities = 75/172 (43%), Positives = 100/172 (58%), Gaps = 5/172 (2%) Query: 1 MVWTVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRLFLSNRVKVNENKQSDGN 60 M WT ER++ LKK WSEGLSASQIA QLGGV+RNAVIGK+HRL LS R K + Sbjct: 1 MNWTDERVETLKKLWSEGLSASQIAAQLGGVSRNAVIGKVHRLGLSGRAKPT----AAPA 56 Query: 61 RKNVTLGSTSPKTRQSSNVYICEPVLKGQLPVVRSKRKSKSMEKNNTISSGIVLPISRCL 120 R+ T S +++ P G + + + +VLPISR L Sbjct: 57 RQKKT-TSAPRAPVRAAQSVRHTPTRTGATALQAEVATPVVAPRYIRPAENVVLPISRHL 115 Query: 121 RLMELTDNTCKWPLGDPFGKDFSFCGSDVCNDSPYCDYHKKLAYQRVNDRRK 172 L+EL + TCKWP+GDP +DF FCG++ PYC+YH ++A+Q +RR+ Sbjct: 116 TLLELGERTCKWPIGDPLNEDFHFCGNESAEAGPYCEYHARVAFQPAAERRR 167 >gnl|CDD|37974 KOG2763, KOG2763, KOG2763, Acyl-CoA thioesterase [Lipid transport and metabolism]. Length = 357 Score = 28.8 bits (64), Expect = 0.78 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 3/87 (3%) Query: 31 VTRNAVIGK--LHRLFLSNRVKVNENKQSDGNRKNVTLGSTSPKTRQSSNVYICEPVLKG 88 V R+A GK L+ L + ++++ R V S + + + E + G Sbjct: 123 VARDATNGKAPLNGLTPETEDEKVLYREAE-ERNKVRKVSEDISSCKQLEEELAERWVPG 181 Query: 89 QLPVVRSKRKSKSMEKNNTISSGIVLP 115 + + K M+ SS I P Sbjct: 182 DMVALVLSPKMVWMKDTKVSSSEICQP 208 >gnl|CDD|38266 KOG3056, KOG3056, KOG3056, Protein required for S-phase initiation or completion [Cell cycle control, cell division, chromosome partitioning]. Length = 578 Score = 28.5 bits (63), Expect = 1.1 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Query: 140 KDFSFCGSDV-CNDSPYCDYHKKLAYQRVNDRRKVQANS 177 KD C S V + YCDYH + AY++++ +R + Sbjct: 289 KDGEKCTSVVNKSLCDYCDYHVEQAYRKLSAKRIELNSG 327 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.317 0.132 0.395 Gapped Lambda K H 0.267 0.0740 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 2,003,548 Number of extensions: 90442 Number of successful extensions: 159 Number of sequences better than 10.0: 1 Number of HSP's gapped: 158 Number of HSP's successfully gapped: 8 Length of query: 178 Length of database: 6,263,737 Length adjustment: 88 Effective length of query: 90 Effective length of database: 4,362,145 Effective search space: 392593050 Effective search space used: 392593050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 54 (24.6 bits)