RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780431|ref|YP_003064844.1| hypothetical protein
CLIBASIA_01580 [Candidatus Liberibacter asiaticus str. psy62]
         (178 letters)



>gnl|CDD|34927 COG5352, COG5352, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 169

 Score =  153 bits (388), Expect = 2e-38
 Identities = 75/172 (43%), Positives = 100/172 (58%), Gaps = 5/172 (2%)

Query: 1   MVWTVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRLFLSNRVKVNENKQSDGN 60
           M WT ER++ LKK WSEGLSASQIA QLGGV+RNAVIGK+HRL LS R K      +   
Sbjct: 1   MNWTDERVETLKKLWSEGLSASQIAAQLGGVSRNAVIGKVHRLGLSGRAKPT----AAPA 56

Query: 61  RKNVTLGSTSPKTRQSSNVYICEPVLKGQLPVVRSKRKSKSMEKNNTISSGIVLPISRCL 120
           R+  T  S      +++      P   G   +           +    +  +VLPISR L
Sbjct: 57  RQKKT-TSAPRAPVRAAQSVRHTPTRTGATALQAEVATPVVAPRYIRPAENVVLPISRHL 115

Query: 121 RLMELTDNTCKWPLGDPFGKDFSFCGSDVCNDSPYCDYHKKLAYQRVNDRRK 172
            L+EL + TCKWP+GDP  +DF FCG++     PYC+YH ++A+Q   +RR+
Sbjct: 116 TLLELGERTCKWPIGDPLNEDFHFCGNESAEAGPYCEYHARVAFQPAAERRR 167


>gnl|CDD|37974 KOG2763, KOG2763, KOG2763, Acyl-CoA thioesterase [Lipid transport
           and metabolism].
          Length = 357

 Score = 28.8 bits (64), Expect = 0.78
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 31  VTRNAVIGK--LHRLFLSNRVKVNENKQSDGNRKNVTLGSTSPKTRQSSNVYICEPVLKG 88
           V R+A  GK  L+ L      +    ++++  R  V   S    + +     + E  + G
Sbjct: 123 VARDATNGKAPLNGLTPETEDEKVLYREAE-ERNKVRKVSEDISSCKQLEEELAERWVPG 181

Query: 89  QLPVVRSKRKSKSMEKNNTISSGIVLP 115
            +  +    K   M+     SS I  P
Sbjct: 182 DMVALVLSPKMVWMKDTKVSSSEICQP 208


>gnl|CDD|38266 KOG3056, KOG3056, KOG3056, Protein required for S-phase initiation
           or completion [Cell cycle control, cell division,
           chromosome partitioning].
          Length = 578

 Score = 28.5 bits (63), Expect = 1.1
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 140 KDFSFCGSDV-CNDSPYCDYHKKLAYQRVNDRRKVQANS 177
           KD   C S V  +   YCDYH + AY++++ +R    + 
Sbjct: 289 KDGEKCTSVVNKSLCDYCDYHVEQAYRKLSAKRIELNSG 327


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.317    0.132    0.395 

Gapped
Lambda     K      H
   0.267   0.0740    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,003,548
Number of extensions: 90442
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 8
Length of query: 178
Length of database: 6,263,737
Length adjustment: 88
Effective length of query: 90
Effective length of database: 4,362,145
Effective search space: 392593050
Effective search space used: 392593050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.6 bits)