RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780431|ref|YP_003064844.1| hypothetical protein
CLIBASIA_01580 [Candidatus Liberibacter asiaticus str. psy62]
(178 letters)
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA
complex, double helix, overhanging base, DNA binding
protein/DNA complex; 3.00A {Escherichia coli}
(A:142-183)
Length = 42
Score = 27.3 bits (61), Expect = 1.2
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 4 TVERIDKLKKFWSEGLSASQIAVQLGGVTRNAV 36
++R D + W +GL AS I+ + + R+ V
Sbjct: 4 KIDR-DAVLNMWQQGLGASHISKTM-NIARSTV 34
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc binding
transcription factor; 2.40A {Rhodobacter sphaeroides 2}
PDB: 2z2s_A (A:103-184)
Length = 82
Score = 26.0 bits (57), Expect = 3.0
Identities = 3/26 (11%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 17 EGLSASQIAVQLGGVTRNAVIGKLHR 42
L+ ++A + G+ + ++
Sbjct: 48 GDLTHRELAAET-GLPLGTIKSRIRL 72
>1ydh_A AT5G11950; structural genomics, protein structure
initiative, center for eukaryotic structural genomics,
CESG; 2.15A {Arabidopsis thaliana} (A:)
Length = 216
Score = 26.1 bits (57), Expect = 3.2
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 144 FCGSDVCNDSPYCDYHKKLAY 164
FCGS + + D +L
Sbjct: 15 FCGSHSGHREVFSDAAIELGN 35
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerization, cell adhesion;
HET: NAG FUC; 2.70A {Homo sapiens} (A:1-99)
Length = 99
Score = 25.9 bits (57), Expect = 3.4
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 20 SASQIAVQLGGVTRNAVIGKLHRLFLSNRVKVNENKQSDGNRK---NVTLGSTSPKTRQS 76
S +Q+ + LG N + S + V+ + +G ++ V LG+ S +T Q+
Sbjct: 34 SEAQVHLALGDQRLNPTV-TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQT 92
Query: 77 SNVY 80
+Y
Sbjct: 93 VTIY 96
>2a33_A Hypothetical protein; structural genomics, protein structure
initiative, center for eukaryotic structural genomics,
CESG, AT2G37210; 1.95A {Arabidopsis thaliana} (A:)
Length = 215
Score = 25.7 bits (56), Expect = 3.5
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 144 FCGSDVCNDSPYCDYHKKLAY 164
FCGS S Y D L
Sbjct: 19 FCGSSQGKKSSYQDAAVDLGN 39
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix,
putative DNA-binding protein, signal recognition
particle, unknown function; 1.70A {Staphylococcus
aureus subsp} (A:1-76)
Length = 76
Score = 25.9 bits (57), Expect = 3.8
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 17 EGLSASQIAVQLGGVTRNAVIGKLHR 42
E S S+IA V+R AV + R
Sbjct: 40 EDYSLSEIADTF-NVSRQAVYDNIRR 64
>1z7z_I Intercellular adhesion molecule-1;
ICAM-1,kilifi,CD54,human coxsackievirus A21,
cryo-electron microscopy,virus-receptor complex,
icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens}
(I:188-283)
Length = 96
Score = 25.5 bits (56), Expect = 3.8
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 20 SASQIAVQLGGVTRNAVIGKLHRLFLSNRVKVNENKQSDGNRK---NVTLGSTSPKTRQS 76
S +Q+ + LG N + S + V+ + +G ++ V LG+ S +T Q+
Sbjct: 32 SEAQVHLALGDQRLNPTV-TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQT 90
Query: 77 SNVY 80
+Y
Sbjct: 91 VTIY 94
>1s7o_A Hypothetical UPF0122 protein
SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA
binding protein, structural genomics; 2.31A
{Streptococcus pyogenes serotype M3} (A:1-73)
Length = 73
Score = 25.4 bits (56), Expect = 4.2
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 EGLSASQIAVQLGGVTRNAVIGKLHR 42
+ S ++IA + GV+R AV + R
Sbjct: 37 DDYSLAEIADEF-GVSRQAVYDNIKR 61
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase;
structural genomics target, NYSGXRC, PSI, protein
structure initiative; 2.72A {Bacillus subtilis} (A:)
Length = 191
Score = 25.7 bits (56), Expect = 4.2
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 144 FCGSDVCNDSPYCDYHKKLAY 164
F GS+ + Y +L
Sbjct: 7 FAGSNPGGNEAYKRKAAELGV 27
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation,
DNA-binding, transmembrane, transcription; 2.00A
{Escherichia coli} (A:117-194)
Length = 78
Score = 25.5 bits (56), Expect = 4.7
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 17 EGLSASQIAVQLGGVTRNAVIGKLHR 42
+GLS +IA + V ++ R
Sbjct: 39 DGLSYEEIAAIM-DCPVGTVRSRIFR 63
>2o8x_A Probable RNA polymerase sigma-C factor; promoter
recognition, transcription regulation, helix-turn-
helix motif; 3.00A {Mycobacterium tuberculosis H37RV}
(A:)
Length = 70
Score = 25.4 bits (56), Expect = 4.8
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 17 EGLSASQIAVQLGGVTRNAVIGKLHR 42
GLS + A G + ++ R
Sbjct: 30 LGLSYADAAAVC-GCPVGTIRSRVAR 54
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.317 0.132 0.395
Gapped
Lambda K H
0.267 0.0666 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,242,008
Number of extensions: 48143
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 13
Length of query: 178
Length of database: 4,956,049
Length adjustment: 83
Effective length of query: 95
Effective length of database: 2,150,234
Effective search space: 204272230
Effective search space used: 204272230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.9 bits)