RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780431|ref|YP_003064844.1| hypothetical protein
CLIBASIA_01580 [Candidatus Liberibacter asiaticus str. psy62]
         (178 letters)



>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal
          domain) {Escherichia coli [TaxId: 562]}
          Length = 43

 Score = 29.2 bits (66), Expect = 0.20
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 4  TVERIDKLKKFWSEGLSASQIAVQLGGVTRNAV 36
           ++R D +   W +GL AS I+  +  + R+ V
Sbjct: 5  KIDR-DAVLNMWQQGLGASHISKTM-NIARSTV 35


>d2oz4a2 b.1.1.4 (A:186-282) Intercellular adhesion molecule-1,
          ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 97

 Score = 25.2 bits (55), Expect = 3.4
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 20 SASQIAVQLGGVTRNAVIGKLHRLFLSNRVKVNENKQSDGNRK---NVTLGSTSPKTRQS 76
          S +Q+ + LG    N  +        S +  V+   + +G ++    V LG+ S +T Q+
Sbjct: 34 SEAQVHLALGDQRLNPTV-TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQT 92

Query: 77 SNVY 80
            +Y
Sbjct: 93 VTIY 96


>d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 91

 Score = 24.4 bits (53), Expect = 5.8
 Identities = 7/23 (30%), Positives = 10/23 (43%)

Query: 6  ERIDKLKKFWSEGLSASQIAVQL 28
          E    +  F   G SA+ +  QL
Sbjct: 20 EIKKYVNTFMKSGWSAASVVNQL 42


>d1hlca_ b.29.1.3 (A:) S-lac lectin, L-14-II {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 129

 Score = 24.0 bits (52), Expect = 6.8
 Identities = 5/49 (10%), Positives = 14/49 (28%), Gaps = 3/49 (6%)

Query: 123 MELTDNTCKWPLGDPFGKDFSFCGSD---VCNDSPYCDYHKKLAYQRVN 168
            E  ++   +  G       +F          D     +  +L +  ++
Sbjct: 64  QEQREDHLCFSPGSEVKFTVTFESDKFKVKLPDGHELTFPNRLGHSHLS 112


>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl
           transferase subunit beta, AccD {Escherichia coli [TaxId:
           562]}
          Length = 263

 Score = 24.0 bits (51), Expect = 8.4
 Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 4/21 (19%)

Query: 149 VCNDSPYCDYHKKL-AYQRVN 168
           VC   P CD+H ++ A  R++
Sbjct: 23  VC---PKCDHHMRMTARNRLH 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.395 

Gapped
Lambda     K      H
   0.267   0.0628    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 613,370
Number of extensions: 24959
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 7
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.3 bits)