BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780431|ref|YP_003064844.1| hypothetical protein
CLIBASIA_01580 [Candidatus Liberibacter asiaticus str. psy62]
         (178 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780431|ref|YP_003064844.1| hypothetical protein CLIBASIA_01580 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 178

 Score =  368 bits (944), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MVWTVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRLFLSNRVKVNENKQSDGN 60
           MVWTVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRLFLSNRVKVNENKQSDGN
Sbjct: 1   MVWTVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRLFLSNRVKVNENKQSDGN 60

Query: 61  RKNVTLGSTSPKTRQSSNVYICEPVLKGQLPVVRSKRKSKSMEKNNTISSGIVLPISRCL 120
           RKNVTLGSTSPKTRQSSNVYICEPVLKGQLPVVRSKRKSKSMEKNNTISSGIVLPISRCL
Sbjct: 61  RKNVTLGSTSPKTRQSSNVYICEPVLKGQLPVVRSKRKSKSMEKNNTISSGIVLPISRCL 120

Query: 121 RLMELTDNTCKWPLGDPFGKDFSFCGSDVCNDSPYCDYHKKLAYQRVNDRRKVQANSE 178
           RLMELTDNTCKWPLGDPFGKDFSFCGSDVCNDSPYCDYHKKLAYQRVNDRRKVQANSE
Sbjct: 121 RLMELTDNTCKWPLGDPFGKDFSFCGSDVCNDSPYCDYHKKLAYQRVNDRRKVQANSE 178


>gi|254780404|ref|YP_003064817.1| inositol monophosphatase family protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 286

 Score = 29.3 bits (64), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 22/169 (13%)

Query: 2   VWTVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRLFLSNRVKVNENKQSDGNR 61
           ++ V+ ID  + F  EG +   I+V +    R  VIG +H   L     V+   +S  N 
Sbjct: 110 LFVVDPIDGTRAF-IEGRNEWCISVAVVHHGR-PVIGVVHASALGKEFFVSVGMKSTCNG 167

Query: 62  KNVTLGSTSPKTRQSSNVYICEPVLKGQLPVVRSKRKSKSMEKNNTISSGIVLPISRCLR 121
           KN+++  +S +   S  +   +  LKG    VR +R+S       +IS       S CLR
Sbjct: 168 KNISV--SSNQMSDSLAIMASDVSLKGLDSYVRFRRQS-------SIS-------SLCLR 211

Query: 122 LMELTDNTCKWPLGDPFGKDFSFCGSDV---CNDSPYCDYHKK-LAYQR 166
           ++ +        + D    D+    +D+   C+     D  +K L Y R
Sbjct: 212 ILMIASGEVDVLIVDRNANDWDLAAADLLLECSGGALVDIDRKLLTYNR 260


>gi|254780134|ref|YP_003064547.1| phage-related integrase/recombinase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 348

 Score = 26.2 bits (56), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 3   WTVERIDKLKKFWSEGLSASQIAVQL 28
           WT E + + K FWSEG S  ++A + 
Sbjct: 174 WTKEDMQQFKSFWSEG-SQPRLAFEF 198


>gi|254780290|ref|YP_003064703.1| quinone oxidoreductase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 332

 Score = 25.0 bits (53), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 78  NVYICEPVLKGQLPVVRSKRKSKSMEKNNTISSGIVLP 115
           N ++  PV+   LP+ +       MEK+  I   I+LP
Sbjct: 295 NSHVIAPVIHTVLPLGKVAMAHDIMEKSEHIGKIILLP 332


>gi|254780625|ref|YP_003065038.1| formamidopyrimidine-DNA glycosylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 289

 Score = 24.3 bits (51), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 3/29 (10%)

Query: 78  NVYICEPVLKGQLPVVRSKRKSKSMEKNN 106
           N+Y+CE + + +L  +   RK++S+ +NN
Sbjct: 182 NIYVCEALWRAKLSPI---RKTRSLIQNN 207


>gi|254780417|ref|YP_003064830.1| transcriptional regulator CarD family protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 188

 Score = 23.9 bits (50), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 74  RQSSNVYICEPVLK---GQLPVVRSKRKSKSMEKNNTISSGIVLPISRCLRLMELTDN 128
           R+ S  +  E  LK   G+  V R+    ++ E +  I+SG ++ I+  +R +  TD+
Sbjct: 70  RKLSEAHFVERALKLVRGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDS 127


>gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 699

 Score = 23.1 bits (48), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 8/34 (23%)

Query: 18  GLSASQIAVQLGGVTRNAVI--------GKLHRL 43
           G++A Q+ +++GG++ N ++        G+LH L
Sbjct: 499 GITAMQMDMKIGGISENIMVMALQQAKRGRLHIL 532


>gi|254780226|ref|YP_003064639.1| translation-associated GTPase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 367

 Score = 22.3 bits (46), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 11/53 (20%), Positives = 29/53 (54%)

Query: 73  TRQSSNVYICEPVLKGQLPVVRSKRKSKSMEKNNTISSGIVLPISRCLRLMEL 125
           ++Q++ + I    ++ ++  +  + ++  ME+ +   SG+ L I    RL++L
Sbjct: 231 SQQNAEMIIISAAIEAEISQLPEEERALFMEELDISISGLELLIRSGYRLLDL 283


>gi|254781217|ref|YP_003065630.1| hypothetical protein CLIBASIA_05620 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 162

 Score = 21.9 bits (45), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 3  WTVERIDKLKKFWSEGLSASQ 23
          +T ERID +   +S GLS SQ
Sbjct: 6  YTKERIDNILASFSGGLSLSQ 26


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.132    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,553
Number of Sequences: 1233
Number of extensions: 4142
Number of successful extensions: 13
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 10
length of query: 178
length of database: 328,796
effective HSP length: 68
effective length of query: 110
effective length of database: 244,952
effective search space: 26944720
effective search space used: 26944720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)