HHsearch alignment for GI: 254780432 and conserved domain: COG1104

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].
Probab=99.46  E-value=9.2e-12  Score=97.38  Aligned_cols=324  Identities=22%  Similarity=0.258  Sum_probs=187.4

Q ss_pred             EEEECHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC----CCCHHH--HHHHH-HHHHHCC--CCCCCCCCCCCCCHH
Q ss_conf             64641022674357878999999999999731450687----578189--99998-6520101--333123565554035
Q gi|254780432|r   33 PFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNL----YQSTQQ--EIFAN-HLIHSTF--ADRVFFTNSGAESVE  103 (392)
Q Consensus        33 ~yiD~~~g~~~~~lGh~~p~i~~a~~~q~~~~~~~~~~----~~~~~~--~~la~-~L~~~~~--~~~v~f~~SGseA~e  103 (392)
T Consensus         3 iYlD~~A---TTp---~~~~v~~~m~~~~~~~-fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnN   75 (386)
T COG1104           3 IYLDNAA---TTP---VDPEVLEAMLPYLTEV-FGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNN   75 (386)
T ss_pred             CCCCCCC---CCC---CCHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH
T ss_conf             2555435---688---9899999999998753-18961155757999999999999999983999780899569847777


Q ss_pred             HHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             677766-54320013478600234354656543212345532113--479998643332221002688754101233222
Q gi|254780432|r  104 CAIKTA-RRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQY--LEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAI  180 (392)
Q Consensus       104 ~Aikla-r~~~~~~g~t~r~~ii~~~~~yHG~t~~a~s~s~~~~~--~~~~~p~~~~~~~~~~~d~~~l~~~~~~~iAav  180 (392)
T Consensus        76 laI~g~~~a~~~~--~~~~-HIIts~i-EH~------aVl~~~~~Le~~g~~Vtyl~v~~~G~v~~e~L~~al~~~T~LV  145 (386)
T COG1104          76 LAIKGAALAYRNA--QKGK-HIITSAI-EHP------AVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILV  145 (386)
T ss_pred             HHHHHHHHHHHCC--CCCC-EEEECCC-CCH------HHHHHHHHHHHCCCEEEEECCCCCCEECHHHHHHHCCCCCEEE
T ss_conf             9998648764235--6898-5887554-349------9999999998669757996888897287999998638884599


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCCCCCCC
Q ss_conf             23332222112462101232211022345721310110034444555310111245453021034444443-44321000
Q gi|254780432|r  181 LIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDIMTIAKGMGGGF-PIGACLAT  259 (392)
Q Consensus       181 i~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f~~e~~gi~PDi~~~gK~l~gG~-P~sav~~~  259 (392)
T Consensus       146 Sim~aNnE~G~IQp----I~ei~~i~k~~~i~fHvDAvQa-~Gkip--i~~~~~~--vD~ls~SaHK~~GpkGiGaLyv~  216 (386)
T COG1104         146 SIMHANNETGTIQP----IAEIGEICKERGILFHVDAVQA-VGKIP--IDLEELG--VDLLSFSAHKFGGPKGIGALYVR  216 (386)
T ss_pred             EEEECCCCEEECCC----HHHHHHHHHHCCCEEEEEHHHH-CCCEE--CCCCCCC--CCEEEEEHHHCCCCCCEEEEEEC
T ss_conf             99850268201120----9999999997598179761332-57600--4602157--65687311213699842799987


Q ss_pred             CCCCCCCCCCCCCCCCC-------CCCCCHHHHHHHHHHHHCC--CCCCHHHHHCCHHHHHHHHHHHHCCCEEEEECCCE
Q ss_conf             11122222332234532-------1111001233455432012--22101121000026889999886797075504640
Q gi|254780432|r  260 NEVAACMNQGSHGSTYG-------GNVLAMVLGEKVLNIIQSD--GFLENVINIAKILFEGLTAIKNRFPNMFLEVRGQG  330 (392)
Q Consensus       260 ~~i~~~~~~~~~~~T~~-------gnpl~~aaa~a~L~~l~~~--~l~~~~~~~g~~l~~~L~~l~~~~~~~v~~vRG~G  330 (392)
T Consensus       217 ~~~--~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~---p~~~--~~g~~  289 (386)
T COG1104         217 PGV--RLEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEII---PDVY--LNGDD  289 (386)
T ss_pred             CCC--CCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCEE--ECCCC
T ss_conf             998--7374460476789978887557999999999999998778889999999999999998509---9689--86885


Q ss_pred             -------EEEEEEECCCHHHHHHHHHHCCEEEEE-----CC------------------CCEEEECCCCCCCHHHHHHHH
Q ss_conf             -------099987249989999999968989962-----68------------------988995589868899999999
Q gi|254780432|r  331 -------LLIGLKTVFSPALLAAKFRDECLLTAP-----SS------------------DNVVRILPPLTITAEEIHEGL  380 (392)
Q Consensus       331 -------l~~~ie~~~~~~~~~~~l~~~Gll~~~-----~~------------------~~~irl~Ppl~it~~eid~~i  380 (392)
T Consensus       290 ~~rlP~~~~~~f~gv-~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~  368 (386)
T COG1104         290 EPRLPNILNFSFPGV-EGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAA  368 (386)
T ss_pred             CCCCCCEEEEEECCC-CHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCHHHHCCCEEEECCCCCCHHHHHHHH
T ss_conf             457898689996897-5789998610408687336434589987149999809996883724899737999899999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999985
Q gi|254780432|r  381 ERIERTAIKL  390 (392)
Q Consensus       381 ~~l~~al~~L  390 (392)
T Consensus       369 ~~l~~~i~~l  378 (386)
T COG1104         369 EALKEIIKRL  378 (386)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999998