HHsearch alignment for GI: 254780432 and conserved domain: COG1104
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].
Probab=99.46 E-value=9.2e-12 Score=97.38 Aligned_cols=324 Identities=22% Similarity=0.258 Sum_probs=187.4
Q ss_pred EEEECHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC----CCCHHH--HHHHH-HHHHHCC--CCCCCCCCCCCCCHH
Q ss_conf 64641022674357878999999999999731450687----578189--99998-6520101--333123565554035
Q gi|254780432|r 33 PFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNL----YQSTQQ--EIFAN-HLIHSTF--ADRVFFTNSGAESVE 103 (392)
Q Consensus 33 ~yiD~~~g~~~~~lGh~~p~i~~a~~~q~~~~~~~~~~----~~~~~~--~~la~-~L~~~~~--~~~v~f~~SGseA~e 103 (392)
T Consensus 3 iYlD~~A---TTp---~~~~v~~~m~~~~~~~-fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnN 75 (386)
T COG1104 3 IYLDNAA---TTP---VDPEVLEAMLPYLTEV-FGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNN 75 (386)
T ss_pred CCCCCCC---CCC---CCHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH
T ss_conf 2555435---688---9899999999998753-18961155757999999999999999983999780899569847777
Q ss_pred HHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 677766-54320013478600234354656543212345532113--479998643332221002688754101233222
Q gi|254780432|r 104 CAIKTA-RRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQY--LEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAI 180 (392)
Q Consensus 104 ~Aikla-r~~~~~~g~t~r~~ii~~~~~yHG~t~~a~s~s~~~~~--~~~~~p~~~~~~~~~~~d~~~l~~~~~~~iAav 180 (392)
T Consensus 76 laI~g~~~a~~~~--~~~~-HIIts~i-EH~------aVl~~~~~Le~~g~~Vtyl~v~~~G~v~~e~L~~al~~~T~LV 145 (386)
T COG1104 76 LAIKGAALAYRNA--QKGK-HIITSAI-EHP------AVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILV 145 (386)
T ss_pred HHHHHHHHHHHCC--CCCC-EEEECCC-CCH------HHHHHHHHHHHCCCEEEEECCCCCCEECHHHHHHHCCCCCEEE
T ss_conf 9998648764235--6898-5887554-349------9999999998669757996888897287999998638884599
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCCCCCCC
Q ss_conf 23332222112462101232211022345721310110034444555310111245453021034444443-44321000
Q gi|254780432|r 181 LIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDIMTIAKGMGGGF-PIGACLAT 259 (392)
Q Consensus 181 i~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f~~e~~gi~PDi~~~gK~l~gG~-P~sav~~~ 259 (392)
T Consensus 146 Sim~aNnE~G~IQp----I~ei~~i~k~~~i~fHvDAvQa-~Gkip--i~~~~~~--vD~ls~SaHK~~GpkGiGaLyv~ 216 (386)
T COG1104 146 SIMHANNETGTIQP----IAEIGEICKERGILFHVDAVQA-VGKIP--IDLEELG--VDLLSFSAHKFGGPKGIGALYVR 216 (386)
T ss_pred EEEECCCCEEECCC----HHHHHHHHHHCCCEEEEEHHHH-CCCEE--CCCCCCC--CCEEEEEHHHCCCCCCEEEEEEC
T ss_conf 99850268201120----9999999997598179761332-57600--4602157--65687311213699842799987
Q ss_pred CCCCCCCCCCCCCCCCC-------CCCCCHHHHHHHHHHHHCC--CCCCHHHHHCCHHHHHHHHHHHHCCCEEEEECCCE
Q ss_conf 11122222332234532-------1111001233455432012--22101121000026889999886797075504640
Q gi|254780432|r 260 NEVAACMNQGSHGSTYG-------GNVLAMVLGEKVLNIIQSD--GFLENVINIAKILFEGLTAIKNRFPNMFLEVRGQG 330 (392)
Q Consensus 260 ~~i~~~~~~~~~~~T~~-------gnpl~~aaa~a~L~~l~~~--~l~~~~~~~g~~l~~~L~~l~~~~~~~v~~vRG~G 330 (392)
T Consensus 217 ~~~--~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~---p~~~--~~g~~ 289 (386)
T COG1104 217 PGV--RLEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEII---PDVY--LNGDD 289 (386)
T ss_pred CCC--CCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCEE--ECCCC
T ss_conf 998--7374460476789978887557999999999999998778889999999999999998509---9689--86885
Q ss_pred -------EEEEEEECCCHHHHHHHHHHCCEEEEE-----CC------------------CCEEEECCCCCCCHHHHHHHH
Q ss_conf -------099987249989999999968989962-----68------------------988995589868899999999
Q gi|254780432|r 331 -------LLIGLKTVFSPALLAAKFRDECLLTAP-----SS------------------DNVVRILPPLTITAEEIHEGL 380 (392)
Q Consensus 331 -------l~~~ie~~~~~~~~~~~l~~~Gll~~~-----~~------------------~~~irl~Ppl~it~~eid~~i 380 (392)
T Consensus 290 ~~rlP~~~~~~f~gv-~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~ 368 (386)
T COG1104 290 EPRLPNILNFSFPGV-EGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAA 368 (386)
T ss_pred CCCCCCEEEEEECCC-CHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCHHHHCCCEEEECCCCCCHHHHHHHH
T ss_conf 457898689996897-5789998610408687336434589987149999809996883724899737999899999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999985
Q gi|254780432|r 381 ERIERTAIKL 390 (392)
Q Consensus 381 ~~l~~al~~L 390 (392)
T Consensus 369 ~~l~~~i~~l 378 (386)
T COG1104 369 EALKEIIKRL 378 (386)
T ss_pred HHHHHHHHHH
T ss_conf 9999999998