HHsearch alignment for GI: 254780432 and conserved domain: COG3033
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism].
Probab=98.09 E-value=0.00027 Score=48.48 Aligned_cols=333 Identities=17% Similarity=0.194 Sum_probs=170.7
Q ss_pred CCCEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCC--H--HH
Q ss_conf 997646410226743578789999999999997314506875-781899999865201013331235655540--3--56
Q gi|254780432|r 30 NGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNLY-QSTQQEIFANHLIHSTFADRVFFTNSGAES--V--EC 104 (392)
Q Consensus 30 dG~~yiD~~~g~~~~~lGh~~p~i~~a~~~q~~~~~~~~~~~-~~~~~~~la~~L~~~~~~~~v~f~~SGseA--~--e~ 104 (392)
T Consensus 44 Sedv~IDLLTDSGTgams~----------~qwaamm~GDEAYagsrs~~~L~~avkdifGfq~~iPthQGRgAE~Il~~i 113 (471)
T COG3033 44 SEDVFIDLLTDSGTGAMTD----------KQWAAMMRGDEAYAGSRSYYALADAVKDIFGFQYTIPTHQGRGAENILIPI 113 (471)
T ss_pred CCCEEEEEECCCCCCCCCH----------HHHHHHHCCCHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHH
T ss_conf 5645788530588662538----------999988525354315533899999999861734651255773177788999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCH---HHHHHHHHC----CCC
Q ss_conf 77766543200134786002343546565432123455321134799986433-3222100---268875410----123
Q gi|254780432|r 105 AIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEG-FDQAKFC---DLQSLKNQI----SND 176 (392)
Q Consensus 105 Aiklar~~~~~~g~t~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~-~~~~~~~---d~~~l~~~~----~~~ 176 (392)
T Consensus 114 ~ik~~~~~------pg-~~~~~~sN~~FdTTr~h~~~ng~~~-~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~n 185 (471)
T COG3033 114 LIKKGEQE------PG-SKMVAFSNYHFDTTRGHIQINGATP-RNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADN 185 (471)
T ss_pred HHHHCCCC------CC-CCCCCCCCCEECCHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 84103206------77-4101234531202267787548702-1231665566455688778657999999998737145
Q ss_pred CCCCCCCCCC-CCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCC------CCCCCCC---------CCE
Q ss_conf 3222233322-22112462101232211022345721310110034444555310------1112454---------530
Q gi|254780432|r 177 TAAILIEPIQ-GEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFA------YEWANVK---------PDI 240 (392)
Q Consensus 177 iAavi~Epv~-g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f~------~e~~gi~---------PDi 240 (392)
T Consensus 186 vp-~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~Rfa---ENaYFIk~rE~gYrd~sI~~IarEm~sYaD~ 261 (471)
T COG3033 186 VP-YIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFA---ENAYFIKQREPGYRDWSIEEIAREMYSYADG 261 (471)
T ss_pred CC-EEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHH---HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 86-8999996266678712077699999999871995896445665---4202234247655546099999999865124
Q ss_pred EECCCCCCCCC-CCCCCCCCCC-----CCCCCCCC----CCCCCCCCCC-CCHHHHHHHHHHHHCCC-CCCHHHHHCCHH
Q ss_conf 21034444443-4432100011-----12222233----2234532111-10012334554320122-210112100002
Q gi|254780432|r 241 MTIAKGMGGGF-PIGACLATNE-----VAACMNQG----SHGSTYGGNV-LAMVLGEKVLNIIQSDG-FLENVINIAKIL 308 (392)
Q Consensus 241 ~~~gK~l~gG~-P~sav~~~~~-----i~~~~~~~----~~~~T~~gnp-l~~aaa~a~L~~l~~~~-l~~~~~~~g~~l 308 (392)
T Consensus 262 ~~mS~K-KD~lvnmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~~~yl~~Rv~Qv-~YL 339 (471)
T COG3033 262 CTMSAK-KDGLVNMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVNFDYLAHRVAQV-QYL 339 (471)
T ss_pred HEEECC-CCCEECCCCEEEECCCCHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHH
T ss_conf 302025-452422465788647507789999876657512666657644232899997888742708999999999-999
Q ss_pred HHHHHHHHHHCCCEEEEECCCEEEEEE-EEC-------CCH-HHHHHHHHHCCEEE-------EECC----------CCE
Q ss_conf 688999988679707550464009998-724-------998-99999999689899-------6268----------988
Q gi|254780432|r 309 FEGLTAIKNRFPNMFLEVRGQGLLIGL-KTV-------FSP-ALLAAKFRDECLLT-------APSS----------DNV 362 (392)
Q Consensus 309 ~~~L~~l~~~~~~~v~~vRG~Gl~~~i-e~~-------~~~-~~~~~~l~~~Gll~-------~~~~----------~~~ 362 (392)
T Consensus 340 ~~~l~~~G--V-pi~~paGGHavfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~el 416 (471)
T COG3033 340 ADGLEEAG--V-PIVQPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAEL 416 (471)
T ss_pred HHHHHHCC--C-EEEECCCCCEEEEEHHHHCCCCCHHHCCHHHHHHHHHHHHCEEEEEEECEECCCCCCCCCCCCCCHHE
T ss_conf 98888659--7-36852787169963456367788244847789999999838236642011115587764347871230
Q ss_pred EEECCC-CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 995589-868899999999999999998
Q gi|254780432|r 363 VRILPP-LTITAEEIHEGLERIERTAIK 389 (392)
Q Consensus 363 irl~Pp-l~it~~eid~~i~~l~~al~~ 389 (392)
T Consensus 417 vRltipRrtYt~~HmD~V~~a~~~l~e~ 444 (471)
T COG3033 417 VRLTIPRRTYTQTHMDFVIEAFKALKEN 444 (471)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 4674351114566799999999999854