HHsearch alignment for GI: 254780432 and conserved domain: COG3977
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism].
Probab=98.24 E-value=6.9e-05 Score=52.39 Aligned_cols=209 Identities=16% Similarity=0.219 Sum_probs=117.9
Q ss_pred HHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCC-CCCCCCCC----C
Q ss_conf 2688754101233222233-3222211246210123221102234572131011003444455531-01112454----5
Q gi|254780432|r 165 DLQSLKNQISNDTAAILIE-PIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLF-AYEWANVK----P 238 (392)
Q Consensus 165 d~~~l~~~~~~~iAavi~E-pv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f-~~e~~gi~----P 238 (392)
T Consensus 170 DF~~l--~i~e~~g~ic~SRPtNPTGN--VlTdeE~~kldalA~~~giPliIDnA------Yg~PFP~iifsd~~~~w~~ 239 (417)
T COG3977 170 DFEHL--HIGESTGAICVSRPTNPTGN--VLTDEELAKLDALARQHGIPLIIDNA------YGVPFPGIIFSDATPLWNE 239 (417)
T ss_pred CHHHH--CCCCCEEEEEECCCCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEECC------CCCCCCCEECCCCCCCCCC
T ss_conf 78881--33676026996478898877--36488999899874223896797356------6799786200356415678
Q ss_pred CEE-ECCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHH--------CCH
Q ss_conf 302-1034444--44344321000111222223322345321111001233455432012221011210--------000
Q gi|254780432|r 239 DIM-TIAKGMG--GGFPIGACLATNEVAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGFLENVINI--------AKI 307 (392)
Q Consensus 239 Di~-~~gK~l~--gG~P~sav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~--------g~~ 307 (392)
T Consensus 240 NiilC~SLSK~GLPG~R~GIiIane~viqaitnmn~i--isLap~~~G~Aiaa-~mie~gdl~rlseqVIrPFY~~~~q~ 316 (417)
T COG3977 240 NIILCMSLSKLGLPGSRCGIIIANEKVIQAITNMNGI--ISLAPGRMGPAIAA-EMIESGDLLRLSEQVIRPFYRNRVQT 316 (417)
T ss_pred CEEEEEEHHHCCCCCCEEEEEECCHHHHHHHHHCCCE--EEECCCCCCHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 7788831433489873035796269999999711453--53167875689999-88602428889998643888988999
Q ss_pred HHHHHHHHHHHCCCEEEEECCCEEEEE----EEECCCHHHHHHHHHHCCEEEEECC-------------CCEEEECCCCC
Q ss_conf 268899998867970755046400999----8724998999999996898996268-------------98899558986
Q gi|254780432|r 308 LFEGLTAIKNRFPNMFLEVRGQGLLIG----LKTVFSPALLAAKFRDECLLTAPSS-------------DNVVRILPPLT 370 (392)
Q Consensus 308 l~~~L~~l~~~~~~~v~~vRG~Gl~~~----ie~~~~~~~~~~~l~~~Gll~~~~~-------------~~~irl~Ppl~ 370 (392)
T Consensus 317 ~~~~l~~~lp~~~~~--iHkpEGAIFlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn--~~ 392 (417)
T COG3977 317 TIAILRRYLPEYRCL--IHKPEGAIFLWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMN--YV 392 (417)
T ss_pred HHHHHHHHCCCCCEE--EECCCCCEEEHHHHCCCCCCHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCEEEEE--CC
T ss_conf 999999865776525--42687515413355358766899999998686899446324789998887612247875--36
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q ss_conf 88999999999999999985
Q gi|254780432|r 371 ITAEEIHEGLERIERTAIKL 390 (392)
Q Consensus 371 it~~eid~~i~~l~~al~~L 390 (392)
T Consensus 393 ~~~e~ie~Gva~lae~ve~~ 412 (417)
T COG3977 393 PEPEKIEKGVAILAEEVERA 412 (417)
T ss_pred CCHHHHHHHHHHHHHHHHHH
T ss_conf 98799999999999999999