HHsearch alignment for GI: 254780432 and conserved domain: PRK08960
>PRK08960 hypothetical protein; Provisional.
Probab=99.66 E-value=2.6e-14 Score=114.02 Aligned_cols=331 Identities=15% Similarity=0.137 Sum_probs=194.1
Q ss_pred CCCCEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHC-CCCC-CCCCCHHHHHHHHHHHHHCC----CCCCCCCCCCCCCH
Q ss_conf 799764641022674357878999999999999731-4506-87578189999986520101----33312356555403
Q gi|254780432|r 29 ENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKL-WHVS-NLYQSTQQEIFANHLIHSTF----ADRVFFTNSGAESV 102 (392)
Q Consensus 29 ~dG~~yiD~~~g~~~~~lGh~~p~i~~a~~~q~~~~-~~~~-~~~~~~~~~~la~~L~~~~~----~~~v~f~~SGseA~ 102 (392)
T Consensus 29 ~~G~~vi~l~~G~--pdf-~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~d~I~vt~G~~~al 105 (387)
T PRK08960 29 AAGHDVIHLEIGE--PDF-TTAAPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGLDVDPERILVTPGGSGAL 105 (387)
T ss_pred HCCCCEEECCCCC--CCC-CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHEEECCCHHHHH
T ss_conf 7799807889948--999-8899999999999853899889987729999999999999858999843289808669999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC-CCC
Q ss_conf 5677766543200134786002343546565432123455321134799986433322210026887541012332-222
Q gi|254780432|r 103 ECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTA-AIL 181 (392)
Q Consensus 103 e~Aiklar~~~~~~g~t~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~~~~~iA-avi 181 (392)
T Consensus 106 ~~~~~~l~-------~pG-D~Vlv~~P~Yp~~~~~~~~~~~~~~~v----p~~~~--~~~~~~~~~le~~~~~~~~~iil 171 (387)
T PRK08960 106 LLASSLLV-------DPG-KHWLLADPGYPCNRHFLRLVEGAAQLV----PVGPD--TRYQLTPALVERHWDSDSVGALV 171 (387)
T ss_pred HHHHHHHC-------CCC-CEEEEECCCCCCHHHHHHHHCCEEEEE----ECCCC--CCCCCCHHHHHHHCCCCCEEEEE
T ss_conf 99999956-------999-879981787655289999853744999----75754--47788999999727878729997
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCE---EECCCCCC-CCCCCCCCC
Q ss_conf 33322221124621012322110223457213101100344445553101112454530---21034444-443443210
Q gi|254780432|r 182 IEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDI---MTIAKGMG-GGFPIGACL 257 (392)
Q Consensus 182 ~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f~~e~~gi~PDi---~~~gK~l~-gG~P~sav~ 257 (392)
T Consensus 172 ~nP-~NPTG~-v~s~~~l~~l~~~a~~~~~~vI~DEiY~~l~~~~~~~s--~~~~~~~~i~i~S~SK~~~~~G~RiG~~v 247 (387)
T PRK08960 172 ASP-ANPTGT-LLSRDELAALSQALKARGGHLVVDEIYHGLTYGVDAAS--VLEVDDSAFVLNSFSKYFGMTGWRLGWLV 247 (387)
T ss_pred CCC-CCCCCC-CCCHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCC--CCCCCCCEEEEEECCCCCCCCCCEEEEEE
T ss_conf 689-898863-14689999999987623977998446144125898653--11367877999506432557763058999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCH----HHHHCCHHHHHHHHHHHHCCCEEEEECCCEEE-
Q ss_conf 0011122222332234532111100123345543201222101----12100002688999988679707550464009-
Q gi|254780432|r 258 ATNEVAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGFLEN----VINIAKILFEGLTAIKNRFPNMFLEVRGQGLL- 332 (392)
Q Consensus 258 ~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~----~~~~g~~l~~~L~~l~~~~~~~v~~vRG~Gl~- 332 (392)
T Consensus 248 ~p~~~i~~~~~~~~~~~~~~~~~~Q~aa~~al~~-~~~~~~~~~~~~~~~rrd~l~~~l~~----~~-~~~~~~P~G~~y 321 (387)
T PRK08960 248 APPAAVPELEKLAQNLYISASSMAQHAALACFEP-ETIAILEARRAEFQRRRDFLLPALRE----LG-FGIAVEPQGAFY 321 (387)
T ss_pred ECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHH----CC-CCCCCCCCEEEE
T ss_conf 8899999999999854377987999999999621-55999999999999999999999997----59-960458986669
Q ss_pred EEEEEC---CCHHHHHHHHH-HCCEEEEEC---C----CCEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 998724---99899999999-689899626---8----98899558986889999999999999999
Q gi|254780432|r 333 IGLKTV---FSPALLAAKFR-DECLLTAPS---S----DNVVRILPPLTITAEEIHEGLERIERTAI 388 (392)
Q Consensus 333 ~~ie~~---~~~~~~~~~l~-~~Gll~~~~---~----~~~irl~Ppl~it~~eid~~i~~l~~al~ 388 (392)
T Consensus 322 ~w~~~~~~~~d~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~~Rls--~~~~~~~l~eal~RL~~~Lk 386 (387)
T PRK08960 322 LYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGRHQAGHHVRFA--YTQSLPRLQEAVERIARGLR 386 (387)
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCEEEEE--ECCCHHHHHHHHHHHHHHHC
T ss_conf 978888889999999999998699999747220899999989999--76999999999999999966