HHsearch alignment for GI: 254780432 and conserved domain: PRK09331
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional.
Probab=98.94 E-value=3.3e-08 Score=74.13 Aligned_cols=319 Identities=15% Similarity=0.179 Sum_probs=183.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCC------CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 8789999999999997314506------8757818999998652010133312356555403567776654320013478
Q gi|254780432|r 47 GHSHPELVAILKSQSEKLWHVS------NLYQSTQQEIFANHLIHSTFADRVFFTNSGAESVECAIKTARRYHYMAGKTN 120 (392)
Q Consensus 47 Gh~~p~i~~a~~~q~~~~~~~~------~~~~~~~~~~la~~L~~~~~~~~v~f~~SGseA~e~Aiklar~~~~~~g~t~ 120 (392)
T Consensus 29 g~lt~ea~ka~~~~gdgysvcd~C~~~LD~i~~Ppi~~f~~~la~flg~D~~rlvnGar~g~qAv~~a~-------c~~G 101 (386)
T PRK09331 29 GRLTPEARKALIEYGDGYSVCDYCKGRLDKIEKPPIADFHEDLAKFLGMDEARVTPGAREGKFAVMHAL-------CKKG 101 (386)
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHCCHHHCCCCCCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHH-------HCCC
T ss_conf 968999999999974887366454110112559988999999999849963785288427899999986-------3699
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC--C-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 60023435465654321234553-2113479998643332221--0-026887541012332222333222211246210
Q gi|254780432|r 121 KFRIVTFEGAFHGRTLATISAGG-KLQYLEGFGPKIEGFDQAK--F-CDLQSLKNQISNDTAAILIEPIQGEGGVRKVPE 196 (392)
Q Consensus 121 r~~ii~~~~~yHG~t~~a~s~s~-~~~~~~~~~p~~~~~~~~~--~-~d~~~l~~~~~~~iAavi~Epv~g~~G~~~~~~ 196 (392)
T Consensus 102 D~-VI-l~rnaHyS~~~A~elaG~~~~~v~~~~-~-~~~~I~~~~~~~~Iee~~~e~gk~~aL~llt~pdy~yGn~~d-- 175 (386)
T PRK09331 102 DY-VV-LDGLAHYTSYVAAERAGLNVREVPKTG-Y-PDYRITPEAYAEKIEEVEDETGKPPALALLTHVDGNYGNLHD-- 175 (386)
T ss_pred CE-EE-ECCCCHHHHHHHHHHCCCEEEEECCCC-C-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHH--
T ss_conf 97-98-448405999999997598589936877-7-234508005799999999861898559999688866445463--
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECC--CCCCCCCCCCCCCCCCCCCCC-CCC-----
Q ss_conf 123221102234572131011003444455531011124545302103--444444344321000111222-223-----
Q gi|254780432|r 197 EFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDIMTIA--KGMGGGFPIGACLATNEVAAC-MNQ----- 268 (392)
Q Consensus 197 ~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f~~e~~gi~PDi~~~g--K~l~gG~P~sav~~~~~i~~~-~~~----- 268 (392)
T Consensus 176 --~~~i~~iah~~~ip~lvdeA~~-~~~----~P~~a~~~GaD~~v~S~HK~~~s~t~sgvL~~~~e~~d~v~R~s~~~~ 248 (386)
T PRK09331 176 --AKKIAKVAHQYGIPLLLNGAYT-VGR----MPVDGKELGADFIVGSGHKSMAASAPSGVLATTEEYADKVFRTSKKFG 248 (386)
T ss_pred --HHHHHHHHHHCCCCEEEECCCC-CCC----CCCCHHHCCCCEEEEECCCCCCCCCCCEEEECCCCHHHHHHHCCCCCH
T ss_conf --8999999987498189814433-577----897466639988986345444234631244304530155652264305
Q ss_pred ----CCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCCHHHHHCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEEEC-----
Q ss_conf ----32234532111100123345543201-22210112100002688999988679707550464009998724-----
Q gi|254780432|r 269 ----GSHGSTYGGNVLAMVLGEKVLNIIQS-DGFLENVINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGLKTV----- 338 (392)
Q Consensus 269 ----~~~~~T~~gnpl~~aaa~a~L~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~~v~~vRG~Gl~~~ie~~----- 338 (392)
T Consensus 249 ~Kev~mLgcTs~g~psy~--LMASfd~vrerv~~~d~ev~~ar~~~~El~kIeG~~-~lge~P~~hdl~~-fdtt~~~~i 324 (386)
T PRK09331 249 VKEVELLGCTLRGAPLVT--LMASFPHVKERVKNWDEEVEKARWFVDELEKIEGFK-QLGEKPRNHDLMR-FETPSFDEI 324 (386)
T ss_pred HHHHHHHCCCCCCCHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HCCCCCCCCCCEE-ECCCCEEEE
T ss_conf 789988536334640899--980659999999877899999999999986087655-4065778777435-337641222
Q ss_pred -----CCHHHHHHHHHHCCEEEEE-CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf -----9989999999968989962-689889955898688999999999999999985
Q gi|254780432|r 339 -----FSPALLAAKFRDECLLTAP-SSDNVVRILPPLTITAEEIHEGLERIERTAIKL 390 (392)
Q Consensus 339 -----~~~~~~~~~l~~~Gll~~~-~~~~~irl~Ppl~it~~eid~~i~~l~~al~~L 390 (392)
T Consensus 325 a~~~~~~Gy~l~~~Lk~r~I~ge~sg~t~~lkl~-s~G~t~E~v~~li~A~keIaeky 381 (386)
T PRK09331 325 AKKHKRRGFFLYEELKKRGIHGIKPGLTKEFKLS-TYGLTWEQVEYVADSFKEIAEKY 381 (386)
T ss_pred HHHCCCCCEEHHHHHHHCCCEEEECCCCEEEEEE-ECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 3204866056799997679649955710178788-61787899999999999999982