HHsearch alignment for GI: 254780432 and conserved domain: PRK13355
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional.
Probab=99.32 E-value=3e-10 Score=87.50 Aligned_cols=336 Identities=17% Similarity=0.196 Sum_probs=186.5
Q ss_pred CCCEEEECHHHHHHHCCCCC-CHHHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHH--H--HHHCCCCCCCCCCCCCCCHH
Q ss_conf 99764641022674357878-999999999999731-450687578189999986--5--20101333123565554035
Q gi|254780432|r 30 NGIPFLDFASGIAVNSLGHS-HPELVAILKSQSEKL-WHVSNLYQSTQQEIFANH--L--IHSTFADRVFFTNSGAESVE 103 (392)
Q Consensus 30 dG~~yiD~~~g~~~~~lGh~-~p~i~~a~~~q~~~~-~~~~~~~~~~~~~~la~~--L--~~~~~~~~v~f~~SGseA~e 103 (392)
T Consensus 144 ~g~~i~klnig-npa~fgf~~p~~~~~~~~~~~~~~~gy~~s~g~~~ar~a~~~~~q~~~~~~~~~~di~~gnGvSE~i~ 222 (518)
T PRK13355 144 NGTHILKLNIG-NPAPFGFRTPDEVVYDMAHQLPDTEGYSPSKGLFSARKAIMQYAQLKNIPNVDIDDIYTGNGVSELIN 222 (518)
T ss_pred CCCEEEEECCC-CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHEEECCCHHHHHH
T ss_conf 48816763478-98866888948999999973723458754557568999999999976999987403565477679999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC-C
Q ss_conf 677766543200134786002343546565432123455321134799986433322210026887541012332222-3
Q gi|254780432|r 104 CAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAIL-I 182 (392)
Q Consensus 104 ~Aiklar~~~~~~g~t~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~~~~~iAavi-~ 182 (392)
T Consensus 223 ~am~All-------n~G-DeVLiP~P~YPlyta~v~L~Gg~pV~------y~~dEe~~w~PDiedLe~kIT~kTKAIVIn 288 (518)
T PRK13355 223 LSMSALL-------DDG-DEVLVPSPDYPLWTACVNLAGGTAVH------YRCDEESEWYPDIDDIRSKITSKTKAIVII 288 (518)
T ss_pred HHHHHHC-------CCC-CEEEECCCCCCCHHHHHHHCCCEEEE------EEECCCCCCCCCHHHHHHHCCCCCEEEEEE
T ss_conf 9999836-------899-98982599997789998860987889------874522177889999985357155799996
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE-----CCCCCCC-CCCCCCC
Q ss_conf 332222112462101232211022345721310110034444555310111245453021-----0344444-4344321
Q gi|254780432|r 183 EPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDIMT-----IAKGMGG-GFPIGAC 256 (392)
Q Consensus 183 Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f~~e~~gi~PDi~~-----~gK~l~g-G~P~sav 256 (392)
T Consensus 289 NPNNPT-GA-VyS~E~LeeIaeiArehdLiIISDEIY~~LvYDg~~h~S-iasla~d~~~It~NG~SKsyaMtGWRiGwm 365 (518)
T PRK13355 289 NPNNPT-GA-LYPKEVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTS-IASLAPDLFCVTFSGLSKSHMIAGFRAGWM 365 (518)
T ss_pred CCCCCC-CC-CCCHHHHHHHHHHHHHCCEEEEECCCHHHCCCCCCCCCC-HHHCCCCCEEEEECCCCCCEECCEEEEEEE
T ss_conf 898988-87-889999999999999859699962302210068986304-767088645999887766633220113665
Q ss_pred CC--CCCCCCC-CCCCC-C-CCCCCCCCCCHHHHHHHHHHHHCC-CCCC---HHHHHCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 00--0111222-22332-2-345321111001233455432012-2210---1121000026889999886797075504
Q gi|254780432|r 257 LA--TNEVAAC-MNQGS-H-GSTYGGNVLAMVLGEKVLNIIQSD-GFLE---NVINIAKILFEGLTAIKNRFPNMFLEVR 327 (392)
Q Consensus 257 ~~--~~~i~~~-~~~~~-~-~~T~~gnpl~~aaa~a~L~~l~~~-~l~~---~~~~~g~~l~~~L~~l~~~~~~~v~~vR 327 (392)
T Consensus 366 v~sG~~~~a~~~Ie~l~~Las~~lcsnvpaQ~A~~aAL~g~qs~~d~~~~~~rl~erRdlv~e~Ln~----IpG-vscvk 440 (518)
T PRK13355 366 MLSGNKRHAKDYIEGLNMLANMRMCSNVPAQSVVQTALGGHQSVKDYTVPGGRLYDQRELVYDMLNA----IPG-ISAVK 440 (518)
T ss_pred EECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC----CCC-CEECC
T ss_conf 4248589999999999998604566368999999998628764899999999999999999999835----999-76589
Q ss_pred CCEEEEEEEEC-------CCHHHHHH-HHHHCCEEEEEC------CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 64009998724-------99899999-999689899626------89889955898688999999999999999985
Q gi|254780432|r 328 GQGLLIGLKTV-------FSPALLAA-KFRDECLLTAPS------SDNVVRILPPLTITAEEIHEGLERIERTAIKL 390 (392)
Q Consensus 328 G~Gl~~~ie~~-------~~~~~~~~-~l~~~Gll~~~~------~~~~irl~Ppl~it~~eid~~i~~l~~al~~L 390 (392)
T Consensus 441 P~GAFYlFPkID~~~~~i~dDeeFal~LL~Ee~VlVVPGsaFG~~~pghfRIs--yaps~e~L~EA~~RI~~FL~~y 515 (518)
T PRK13355 441 PKAAFYIFPKIDVKIFNIHSDEQFALDLLHEKHILISHGGAFNWDKPDHFRVV--YLPRLGMLEETMDELDDFFSYY 515 (518)
T ss_pred CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEE--ECCCHHHHHHHHHHHHHHHHHH
T ss_conf 98158995541534489989999999999858999958754489998979999--2799999999999999999986