HHsearch alignment for GI: 254780432 and conserved domain: TIGR00461
>TIGR00461 gcvP glycine dehydrogenase; InterPro: IPR003437 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T . The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0006544 glycine metabolic process, 0005961 glycine dehydrogenase complex (decarboxylating).
Probab=93.05 E-value=0.81 Score=25.79 Aligned_cols=286 Identities=17% Similarity=0.277 Sum_probs=170.8
Q ss_pred HHHHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999986520101333123-5655540356777665432001347860023435465654321234553211347999864
Q gi|254780432|r 77 EIFANHLIHSTFADRVFF-TNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKI 155 (392)
Q Consensus 77 ~~la~~L~~~~~~~~v~f-~~SGseA~e~Aiklar~~~~~~g~t~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~ 155 (392)
T Consensus 554 a~Le~wL~~iTGfDaislQPNsGaQGEYaGL~vIR~YheSrgE~hRn-iCLIP~SAHGTNPASA~MaGm~V-------Vp 625 (965)
T TIGR00461 554 AQLEKWLVEITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGEEHRN-ICLIPVSAHGTNPASAAMAGMQV-------VP 625 (965)
T ss_pred HHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC-EEECCCCCCCCCHHHHHHCCCEE-------EE
T ss_conf 99988752105766244178888446678899999987605889874-45307776788728996169868-------98
Q ss_pred CCCC---CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECC----CCCCCCCCCCC
Q ss_conf 3332---2210026887541012332222333222211246210123221102234572131011----00344445553
Q gi|254780432|r 156 EGFD---QAKFCDLQSLKNQISNDTAAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDE----VQTGYGRTGKL 228 (392)
Q Consensus 156 ~~~~---~~~~~d~~~l~~~~~~~iAavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DE----V~tG~GRtG~~ 228 (392)
T Consensus 626 V~Cd~~GniDl~DL~~KAEq~gd~Laa~Mv-TYPSThGvfE~t---I~~~~diVH~FGGqVYlDGANMNAQVGltsPgd~ 701 (965)
T TIGR00461 626 VKCDKDGNIDLVDLKAKAEQYGDELAAVMV-TYPSTHGVFEET---IREVCDIVHRFGGQVYLDGANMNAQVGLTSPGDL 701 (965)
T ss_pred EEECCCCCEEHHHHHHHHHHCCCCEEEEEE-ECCCCCCCCHHH---HCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf 765699950077778888750665256775-058776643222---1001311442688475245664223366786110
Q ss_pred CCCCCCCCCCCEE--ECCCCC----CCCCC-CCCCCCCCCCCCCCCCCC------------CCCCCCCCCCCHH----HH
Q ss_conf 1011124545302--103444----44434-432100011122222332------------2345321111001----23
Q gi|254780432|r 229 FAYEWANVKPDIM--TIAKGM----GGGFP-IGACLATNEVAACMNQGS------------HGSTYGGNVLAMV----LG 285 (392)
Q Consensus 229 f~~e~~gi~PDi~--~~gK~l----~gG~P-~sav~~~~~i~~~~~~~~------------~~~T~~gnpl~~a----aa 285 (392)
T Consensus 702 G--------ADVcHLNLHKTFcIPHGGGGPgmgPIgVKsHL~pflP~~~~~s~~~~~g~~~sig~vSaAPyGsAsiLpIS 773 (965)
T TIGR00461 702 G--------ADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKTDVVSVVELEGESKSIGAVSAAPYGSASILPIS 773 (965)
T ss_pred C--------CCHHHHHCCCCEECCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEECCCCCCHHHHHHH
T ss_conf 5--------63434305442012686787877522246402245888760001565312324354523654541466889
Q ss_pred HHHHHHHHCCCCCC--HHHHH-CCHHHHHHHHHHHHCCCEEEEECCCEEEEEEEECCC-----------HHHHHHHHHHC
Q ss_conf 34554320122210--11210-000268899998867970755046400999872499-----------89999999968
Q gi|254780432|r 286 EKVLNIIQSDGFLE--NVINI-AKILFEGLTAIKNRFPNMFLEVRGQGLLIGLKTVFS-----------PALLAAKFRDE 351 (392)
Q Consensus 286 ~a~L~~l~~~~l~~--~~~~~-g~~l~~~L~~l~~~~~~~v~~vRG~Gl~~~ie~~~~-----------~~~~~~~l~~~ 351 (392)
T Consensus 774 w~YI~MMG~eGL~kas~vAiLnaNYma~RL~d---~ypiLf~nemg~~~~vAHEcIlDlRplK~~~gie~~DvAKRL~Dy 850 (965)
T TIGR00461 774 WMYIKMMGAEGLKKASEVAILNANYMAKRLKD---YYPILFVNEMGRDKRVAHECILDLRPLKKKAGIEALDVAKRLIDY 850 (965)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH---CCCEEEEECCCCCCCEEEEEEECHHHHHHHHCCCHHHHHHHHHCC
T ss_conf 99998522013503557775626689988761---076544311578883135676352554565176544567664115
Q ss_pred CEEE----EECCCCEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9899----6268988995589868899999999999999
Q gi|254780432|r 352 CLLT----APSSDNVVRILPPLTITAEEIHEGLERIERT 386 (392)
Q Consensus 352 Gll~----~~~~~~~irl~Ppl~it~~eid~~i~~l~~a 386 (392)
T Consensus 851 GFHAPT~sfPV~G-TlMvEPTESEsl~ELDRF~DAMiaI 888 (965)
T TIGR00461 851 GFHAPTLSFPVAG-TLMVEPTESESLEELDRFCDAMIAI 888 (965)
T ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 7765332336787-4200554656631245888899999