HHsearch alignment for GI: 254780432 and conserved domain: TIGR01976
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein; InterPro: IPR011340 This entry describes probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. The most closely related characterised proteins are active as cysteine desulphurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown..
Probab=95.88 E-value=0.17 Score=30.21 Aligned_cols=314 Identities=19% Similarity=0.188 Sum_probs=161.8
Q ss_pred EEEECHHHHHHHCCCCCCHHHHHHHHHHHHHCCC-CCCCCCCH-HH-HH---HHH----HHHHHCCCCCCCCCCCCCCCH
Q ss_conf 6464102267435787899999999999973145-06875781-89-99---998----652010133312356555403
Q gi|254780432|r 33 PFLDFASGIAVNSLGHSHPELVAILKSQSEKLWH-VSNLYQST-QQ-EI---FAN----HLIHSTFADRVFFTNSGAESV 102 (392)
Q Consensus 33 ~yiD~~~g~~~~~lGh~~p~i~~a~~~q~~~~~~-~~~~~~~~-~~-~~---la~----~L~~~~~~~~v~f~~SGseA~ 102 (392)
T Consensus 23 ~~~DnpAG------~q~Pq~V~dAv~~~L~~~~A~~gg~~~~~G~~~~~~vd~AR~a~A~LlnA~~Pe~vv~---G~~~T 93 (410)
T TIGR01976 23 VFFDNPAG------TQIPQSVLDAVSAALTRSNANRGGAYESSGRKADQVVDDAREAVADLLNAESPEEVVF---GANAT 93 (410)
T ss_pred EEEECCCC------CCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEE---CCCHH
T ss_conf 89757888------8777347999999987413013767766306899999999999999726798885676---78668
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCC--CCCCCCCCCCH-HHHHHHHHCCCC
Q ss_conf 567776654320013478600234354656543212345532113479---998--64333222100-268875410123
Q gi|254780432|r 103 ECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQYLEG---FGP--KIEGFDQAKFC-DLQSLKNQISND 176 (392)
Q Consensus 103 e~Aiklar~~~~~~g~t~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~---~~p--~~~~~~~~~~~-d~~~l~~~~~~~ 176 (392)
T Consensus 94 ~L~~~ls~a~~~~~~-~GDEvivt~LDHe----------aNispW~~~a~~~Ga~Vkw~~~d~~~~~L~~~~L~~Lls~r 162 (410)
T TIGR01976 94 SLAYLLSRALSRRWG-PGDEVIVTRLDHE----------ANISPWLQAAEDAGAKVKWARVDEADGELHPDDLASLLSPR 162 (410)
T ss_pred HHHHHHHHHHHHHCC-CCCEEEEECCCCC----------CCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHCCCCCC
T ss_conf 999999999851268-9855897167660----------01368999998389789996336231544869982366882
Q ss_pred ---CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC---CCEEECCCCCCCC
Q ss_conf ---3222233322221124621012322110223457213101100344445553101112454---5302103444444
Q gi|254780432|r 177 ---TAAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVK---PDIMTIAKGMGGG 250 (392)
Q Consensus 177 ---iAavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f~~e~~gi~---PDi~~~gK~l~gG 250 (392)
T Consensus 163 TRLVAvt~ASn~~---Gs~~d----l~A~~~~vh~aGA~v~VDaVhya--------PH~L~Dvqa~gaD~l~cSaYK~fG 227 (410)
T TIGR01976 163 TRLVAVTAASNLL---GSIVD----LAALTELVHAAGALVYVDAVHYA--------PHGLIDVQALGADFLVCSAYKFFG 227 (410)
T ss_pred HHHHHHHHHHCCC---CCHHH----HHHHHHHHHHCCCEEEECHHHHC--------CCCCCCHHHHCCCEEEECCEECCC
T ss_conf 2555623440232---55115----88999999875987988111004--------566641342278879985631168
Q ss_pred CCCCCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCHHHHHHHHHHHH----C-------CCCC---CHHHH
Q ss_conf 34432100011122222332-------------23453211110012334554320----1-------2221---01121
Q gi|254780432|r 251 FPIGACLATNEVAACMNQGS-------------HGSTYGGNVLAMVLGEKVLNIIQ----S-------DGFL---ENVIN 303 (392)
Q Consensus 251 ~P~sav~~~~~i~~~~~~~~-------------~~~T~~gnpl~~aaa~a~L~~l~----~-------~~l~---~~~~~ 303 (392)
T Consensus 228 PH~G~l~~R~~~~~~l~~~k~~~~~d~~P~r~E~GT~~yEllAG~~AavdYLa~lg~nlA~~~~gsrR~~lv~sf~~~~a 307 (410)
T TIGR01976 228 PHLGILWGRPELLKSLPPYKLEFSEDTGPERFELGTLQYELLAGVVAAVDYLAGLGRNLAASANGSRRERLVASFEAIEA 307 (410)
T ss_pred CCEEEEEECHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 85017871146640468763367788888514514556026789999999999823210689886558999999999999
Q ss_pred HCCHHHHHHHHHHHHCCCEEEEECCCE----E-----EEEEEEC-CCHHHHHHHHHHCCEEEEEC---------------
Q ss_conf 000026889999886797075504640----0-----9998724-99899999999689899626---------------
Q gi|254780432|r 304 IAKILFEGLTAIKNRFPNMFLEVRGQG----L-----LIGLKTV-FSPALLAAKFRDECLLTAPS--------------- 358 (392)
Q Consensus 304 ~g~~l~~~L~~l~~~~~~~v~~vRG~G----l-----~~~ie~~-~~~~~~~~~l~~~Gll~~~~--------------- 358 (392)
T Consensus 308 yE~~l~~~Ll~~L~~~P~-~-t~yG~~d~~R~~~RvPTv~F~v~~~~P~~~~~~La~~~v~~~~GHfYA~~~~~~LGl~~ 385 (410)
T TIGR01976 308 YENRLAERLLAGLSDLPG-V-TVYGVQDEKRLAERVPTVAFTVAGLSPQRVVRRLADQGVDVWAGHFYAVRLLRRLGLEA 385 (410)
T ss_pred HHHHHHHHHHHHHHHCCC-E-EEECHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCEEECCCCHHHHHHHHCCCCC
T ss_conf 999999999999874895-6-99735578646425975889727878799999985368633126411689998658989
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 8988995589868899999999999
Q gi|254780432|r 359 SDNVVRILPPLTITAEEIHEGLERI 383 (392)
Q Consensus 359 ~~~~irl~Ppl~it~~eid~~i~~l 383 (392)
T Consensus 386 ~~GvvR~gLaHY~t~eevd~l~~aL 410 (410)
T TIGR01976 386 DGGVVRVGLAHYNTAEEVDRLLEAL 410 (410)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHCC
T ss_conf 8873898525779889999998509