HHsearch alignment for GI: 254780432 and conserved domain: TIGR03235
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=98.99 E-value=3.8e-09 Score=80.24 Aligned_cols=289 Identities=17% Similarity=0.214 Sum_probs=151.8
Q ss_pred EEECHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH------HHHH-HHHHHC--CCCCCCCCCCCCCCHHH
Q ss_conf 46410226743578789999999999997314506875781899------9998-652010--13331235655540356
Q gi|254780432|r 34 FLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNLYQSTQQE------IFAN-HLIHST--FADRVFFTNSGAESVEC 104 (392)
Q Consensus 34 yiD~~~g~~~~~lGh~~p~i~~a~~~q~~~~~~~~~~~~~~~~~------~la~-~L~~~~--~~~~v~f~~SGseA~e~ 104 (392)
T Consensus 1 YLD~aAT------tp~~~~v~~~~~~~~~~~~~Np~s~~h~~g~~a~~~le~aR~~ia~~lga~~~eiiFTsg~Tes~nl 74 (354)
T TIGR03235 1 YLDHNAT------TPVDPEVAEVMLPFLLEEFGNPGSRTHEHGHNAKKAVERARKQVAEALGAQTKEVIFTSGATESNNI 74 (354)
T ss_pred CCCCCCC------CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHH
T ss_conf 9888678------9899999999999998668797303128999999999999999999809996778996883799999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 77766543200134786002343546565432123455321134799986433322210026887541012332222333
Q gi|254780432|r 105 AIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILIEP 184 (392)
Q Consensus 105 Aiklar~~~~~~g~t~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~~~~~iAavi~Ep 184 (392)
T Consensus 75 ~i~g~~~~~---~~~g~-~ii~s~~E-H~svl~~~~----~l~~~G~~v~~~~vd~~G~id~~~l~~~l~~~t~lvsi~~ 145 (354)
T TIGR03235 75 AILGLARAH---ENKGK-HIITTAIE-HPAILEPAR----ALERNGFTVTYLEVDESGRVSVEELADAIRDDTLLVSIMH 145 (354)
T ss_pred HHHHHHHHH---HCCCC-EEEECHHH-HHHHHHHHH----HHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEEC
T ss_conf 999999850---26999-99981003-044799999----9996496899955578982877999987268977999988
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECC--CCCCCCCCCCCCCCCCCC
Q ss_conf 222211246210123221102234572131011003444455531011124545302103--444444344321000111
Q gi|254780432|r 185 IQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDIMTIA--KGMGGGFPIGACLATNEV 262 (392)
Q Consensus 185 v~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f~~e~~gi~PDi~~~g--K~l~gG~P~sav~~~~~i 262 (392)
T Consensus 146 ~nnetG~i~p----i~~i~~~~~~~g~~~~vDa~Q~-~g~~----~id~~~~~~D~~s~S~HK-~~GP~GiG~L~vr~~~ 215 (354)
T TIGR03235 146 VNNETGSLQP----IREIAELCEAREVFFHSDAAQV-VGKI----TVDLERDHIDLISLSGHK-AYGPKGIGALYIRKRG 215 (354)
T ss_pred CCCCCCCCCC----HHHHHHHHHCCCCEEEEECHHC-CCCC----CCCHHHHCCCEEEEECCC-CCCCCCEEEEEEECCC
T ss_conf 7566676388----9999886522564156250011-5875----557788499737631000-3488714999980466
Q ss_pred CC--CCCCCCC---------CCCCCCCCCCHHHHHHHHHHHHC--CCCCCHHHHHCCHHHHHHHHHHHHCCCEEEEECC-
Q ss_conf 22--2223322---------34532111100123345543201--2221011210000268899998867970755046-
Q gi|254780432|r 263 AA--CMNQGSH---------GSTYGGNVLAMVLGEKVLNIIQS--DGFLENVINIAKILFEGLTAIKNRFPNMFLEVRG- 328 (392)
Q Consensus 263 ~~--~~~~~~~---------~~T~~gnpl~~aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~~v~~vRG- 328 (392)
T Consensus 216 ~~~~~l~Pl~~GGgqe~g~r~GT~--nv~~i~g~~~A~~~~~~~~~~~~~~~~~l~~~l~~~L~---~~~~~v~--i~g~ 288 (354)
T TIGR03235 216 KPKAPLAPIMFGGGQERGLRPGTL--PVPLIVGMGEAAEIARRNAQAWGVRLRAMCNLLRDALQ---TSLPGVK--LNGD 288 (354)
T ss_pred CCCCCCCCEECCCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCEE--ECCC
T ss_conf 766664640368988687468996--59999999999999998289999999999999999997---4599659--6588
Q ss_pred ----CEEEEEEEEC-CCHHHHHHHHHHCCEEE
Q ss_conf ----4009998724-99899999999689899
Q gi|254780432|r 329 ----QGLLIGLKTV-FSPALLAAKFRDECLLT 355 (392)
Q Consensus 329 ----~Gl~~~ie~~-~~~~~~~~~l~~~Gll~ 355 (392)
T Consensus 289 ~~~r~p~i~s~~~~gi~~~~l~~~L-~~~iav 319 (354)
T TIGR03235 289 PAETLPNILSFSFEGVNPEALIRNL-KADAAV 319 (354)
T ss_pred CCCCCCCEEEEEECCCCHHHHHHHH-CCCCEE
T ss_conf 2247588899997996999999986-399899