HHsearch alignment for GI: 254780432 and conserved domain: TIGR03246

>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=100.00  E-value=0  Score=798.09  Aligned_cols=386  Identities=45%  Similarity=0.768  Sum_probs=373.3

Q ss_pred             CCEECCCCCCCCEEEEEECCCEEEECCCCEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf             31451558888748985010379967997646410226743578789999999999997314506875781899999865
Q gi|254780432|r    4 NDFLFNTYDQSDIRFEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNLYQSTQQEIFANHL   83 (392)
Q Consensus         4 ~~~~~~~~~~~p~~i~~a~G~~i~d~dG~~yiD~~~g~~~~~lGh~~p~i~~a~~~q~~~~~~~~~~~~~~~~~~la~~L   83 (392)
T Consensus         7 ~~~~~~~y~~~P~vi~ra~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~la~~L   86 (397)
T TIGR03246         7 DQVMVPNYAPAPFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGNGYTNEPVLRLAKKL   86 (397)
T ss_pred             HHHCCCCCCCCCCEEEEEECCEEEECCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf             77442669999842898364999969879999946348766557898899999999996577776863488999999999


Q ss_pred             HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             20101333123565554035677766543200134786002343546565432123455321134799986433322210
Q gi|254780432|r   84 IHSTFADRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKF  163 (392)
Q Consensus        84 ~~~~~~~~v~f~~SGseA~e~Aiklar~~~~~~g~t~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~  163 (392)
T Consensus        87 ~~~~~~~~v~f~~sGsEA~e~AlklAr~~~~~~~~~~k~~iis~~~~yHG~t~~~~s~~~~~~~~~~~~p~~~~~~~~~~  166 (397)
T TIGR03246        87 VDATFADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY  166 (397)
T ss_pred             HHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf             75148776997286778999999999999985179997689997278689856410468996556788899976420452


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             02688754101233222233322221124621012322110223457213101100344445553101112454530210
Q gi|254780432|r  164 CDLQSLKNQISNDTAAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDIMTI  243 (392)
Q Consensus       164 ~d~~~l~~~~~~~iAavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f~~e~~gi~PDi~~~  243 (392)
T Consensus       167 ~d~~~~~~~~~~~iaAvi~EPv~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~  246 (397)
T TIGR03246       167 NDLAAAKALISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILTS  246 (397)
T ss_pred             CCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEECCCCCCCCCHHHCCCCCCCEEEE
T ss_conf             33999998528873799993877888987388899999999999859358634122078777783143226989987887


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHCCCEE
Q ss_conf             34444443443210001112222233223453211110012334554320122210112100002688999988679707
Q gi|254780432|r  244 AKGMGGGFPIGACLATNEVAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGFLENVINIAKILFEGLTAIKNRFPNMF  323 (392)
Q Consensus       244 gK~l~gG~P~sav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~v  323 (392)
T Consensus       247 gK~l~gG~P~sav~~~~~i~~~~~~~~h~~T~~gnpl~~aaala~L~~i~~e~l~~~~~~~g~~l~~~L~~l~~~~-~~i  325 (397)
T TIGR03246       247 AKALGGGFPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGLEKINARY-NVF  325 (397)
T ss_pred             CCCCCCCCEEEEEEECHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC-CCE
T ss_conf             4224688404899744888865187773866882999999999999999854799999999999999999987417-987


Q ss_pred             EEECCCEEEEEEEECCC----HHHHHHHHHHCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55046400999872499----89999999968989962689889955898688999999999999999985
Q gi|254780432|r  324 LEVRGQGLLIGLKTVFS----PALLAAKFRDECLLTAPSSDNVVRILPPLTITAEEIHEGLERIERTAIKL  390 (392)
Q Consensus       324 ~~vRG~Gl~~~ie~~~~----~~~~~~~l~~~Gll~~~~~~~~irl~Ppl~it~~eid~~i~~l~~al~~L  390 (392)
T Consensus       326 ~~VRG~Glm~giel~~~~~~~a~~i~~~~~~~Gll~~~~g~n~lrl~PPL~it~eeid~~l~~l~~al~~v  396 (397)
T TIGR03246       326 SEIRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALIAGPNVVRFAPSLVISDDDIDEGLARFERAIEQV  396 (397)
T ss_pred             EEEEECCEEEEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             75422435999997278633599999999978928930799979997885189999999999999999986