HHsearch alignment for GI: 254780432 and conserved domain: TIGR03392
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.73 E-value=5.5e-15 Score=118.43 Aligned_cols=333 Identities=14% Similarity=0.132 Sum_probs=195.9
Q ss_pred CCCCEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH------HHHH-HHHHHCC---CCCCCCCCCC
Q ss_conf 7997646410226743578789999999999997314506875781899------9998-6520101---3331235655
Q gi|254780432|r 29 ENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNLYQSTQQE------IFAN-HLIHSTF---ADRVFFTNSG 98 (392)
Q Consensus 29 ~dG~~yiD~~~g~~~~~lGh~~p~i~~a~~~q~~~~~~~~~~~~~~~~~------~la~-~L~~~~~---~~~v~f~~SG 98 (392)
T Consensus 14 ~~~~iYlDnAat------t~~p~~V~~a~~~~~~~~~~n~~~s~~~~~~~~~~~~e~aR~~iA~~lga~~~~~Iifts~~ 87 (398)
T TIGR03392 14 QDGTVYLDSAAT------ALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGT 87 (398)
T ss_pred CCCEEEEECCCC------CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCH
T ss_conf 999088678632------68989999999999986348887514399999999999999999997095998979995877
Q ss_pred CCCHHHHHHH-HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 5403567776-654320013478600234354656543212345532113479998643332221002688754101233
Q gi|254780432|r 99 AESVECAIKT-ARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDT 177 (392)
Q Consensus 99 seA~e~Aikl-ar~~~~~~g~t~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~~~~~i 177 (392)
T Consensus 88 Te~~n~~~~~~~~~~----~~~g-d~ii~s~~EH~s~~~pw~~~~----~~~g~~v~~~~~~~~~~~d~~~l~~~i~~~T 158 (398)
T TIGR03392 88 TESINLVAQSYARPR----LQPG-DEIIVSEAEHHANLIPWLMVA----QQTGAKVVKLPIGADLLPDIRQLPELLTPRT 158 (398)
T ss_pred HHHHHHHHHHHHHHH----CCCC-CEEEEECCCCCCCHHHHHHHH----HHCCCEEEEECCCCCCCCCHHHHHHHCCCCC
T ss_conf 999998987768872----3998-989982440034238999887----6448527996147889879999998525787
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECC--CCCCCCCCCCC
Q ss_conf 2222333222211246210123221102234572131011003444455531011124545302103--44444434432
Q gi|254780432|r 178 AAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDIMTIA--KGMGGGFPIGA 255 (392)
Q Consensus 178 Aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f~~e~~gi~PDi~~~g--K~l~gG~P~sa 255 (392)
T Consensus 159 ~lVsi~~vsn~~G~i~p----i~~I~~~~~~~g~~~~vDa~Q~-~g~~--~idv~~~--~~D~~~~S~hK-l~GP~G~G~ 228 (398)
T TIGR03392 159 RILALGQMSNVTGGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG--PPDVQAL--DIDFYAFSGHK-LYGPTGIGV 228 (398)
T ss_pred CEEEEECCCCCCCCCCC----HHHHHHHHHHCCCEEEEECCCC-CCCC--CCCCCCC--CCCEEEEECCC-CCCCCCEEE
T ss_conf 08998255567888587----9999999986597478633411-5620--3341026--78779986553-569984189
Q ss_pred CCCCCCCCCCCCCCCCCCC------------------C---CCCCCCHHHHHHHHHHHHCCC---CCCHHHHHCCHHHHH
Q ss_conf 1000111222223322345------------------3---211110012334554320122---210112100002688
Q gi|254780432|r 256 CLATNEVAACMNQGSHGST------------------Y---GGNVLAMVLGEKVLNIIQSDG---FLENVINIAKILFEG 311 (392)
Q Consensus 256 v~~~~~i~~~~~~~~~~~T------------------~---~gnpl~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~ 311 (392)
T Consensus 229 Ly~~~~~~~~l~p~~~Gg~~~~~~~~~~~~~~~~~~r~e~GT~n~~~i~gl~~al~~l~~~~~~~~~~~~~~L~~~~~~~ 308 (398)
T TIGR03392 229 LYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEER 308 (398)
T ss_pred EEECCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 99841147437973579973443347776445550211468854878999999999999649999999999999999999
Q ss_pred HHHHHHHCCCEEEEECCCE-EEEEEEECC-CHHHHHHHHHHCCEEEEECC------------CCEEEECCCCCCCHHHHH
Q ss_conf 9999886797075504640-099987249-98999999996898996268------------988995589868899999
Q gi|254780432|r 312 LTAIKNRFPNMFLEVRGQG-LLIGLKTVF-SPALLAAKFRDECLLTAPSS------------DNVVRILPPLTITAEEIH 377 (392)
Q Consensus 312 L~~l~~~~~~~v~~vRG~G-l~~~ie~~~-~~~~~~~~l~~~Gll~~~~~------------~~~irl~Ppl~it~~eid 377 (392)
T Consensus 309 l~~----l~g~-~~~~~~~~~~~~f~~~~~~~~~l~~~L~~~gi~v~~G~~ca~~~l~a~g~~g~iRvS~~~ynT~edId 383 (398)
T TIGR03392 309 LAQ----LPGF-RSFRCPGSSLLAFDFAGVHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVD 383 (398)
T ss_pred HHH----CCCC-CCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEECCCCCCHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf 863----8996-44579999679998799399999999977897996686654899998689987999678888999999
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999999852
Q gi|254780432|r 378 EGLERIERTAIKLS 391 (392)
Q Consensus 378 ~~i~~l~~al~~L~ 391 (392)
T Consensus 384 ~li~aL~~~l~~l~ 397 (398)
T TIGR03392 384 ALVDAVGAALELLN 397 (398)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999843