HHsearch alignment for GI: 254780432 and conserved domain: TIGR03402
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.54 E-value=1.7e-12 Score=102.20 Aligned_cols=324 Identities=21% Similarity=0.220 Sum_probs=180.1
Q ss_pred EEECHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHH------HHH-HHHHHCC--CCCCCCCCCCCCCHHH
Q ss_conf 464102267435787899999999999973145068757818999------998-6520101--3331235655540356
Q gi|254780432|r 34 FLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNLYQSTQQEI------FAN-HLIHSTF--ADRVFFTNSGAESVEC 104 (392)
Q Consensus 34 yiD~~~g~~~~~lGh~~p~i~~a~~~q~~~~~~~~~~~~~~~~~~------la~-~L~~~~~--~~~v~f~~SGseA~e~ 104 (392)
T Consensus 2 YlD~AAt------t~~~~~V~~a~~~~~~~~~-~np~~~h~~~~~a~~~~e~aR~~iA~~lga~~~eIvFt~~~T~a~n~ 74 (379)
T TIGR03402 2 YLDNNAT------TRVDPEVLEAMLPYFTEYF-GNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNT 74 (379)
T ss_pred CCCCCCC------CCCCHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHH
T ss_conf 4417665------8899999999999999658-99776589999999999999999999829996739992887999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 77766543200134786002343546565432123455321134799986433322210026887541012332222333
Q gi|254780432|r 105 AIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILIEP 184 (392)
Q Consensus 105 Aiklar~~~~~~g~t~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~~~~~iAavi~Ep 184 (392)
T Consensus 75 ~i~~~~~~-----~~~~d~Ii~s~~e-H~a~~~~~~---~l-~~~g~~v~~~~~~~~g~id~~~l~~~l~~~T~lvs~~~ 144 (379)
T TIGR03402 75 AIKSALAA-----QPEKRHIITTAVE-HPAVLSLCQ---HL-EKQGYKVTYLPVDEEGRLDLEELRAAITDDTALVSVMW 144 (379)
T ss_pred HHHHHHHH-----CCCCCEEEEECCH-HHHHHHHHH---HH-HHCCCEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEEC
T ss_conf 99999986-----7999999980131-045667999---99-96598899970378982642667887267862899612
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECC--CCCCCCCCCCCCCCCCCC
Q ss_conf 222211246210123221102234572131011003444455531011124545302103--444444344321000111
Q gi|254780432|r 185 IQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDIMTIA--KGMGGGFPIGACLATNEV 262 (392)
Q Consensus 185 v~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f~~e~~gi~PDi~~~g--K~l~gG~P~sav~~~~~i 262 (392)
T Consensus 145 ~sn~tG~i~p----v~~I~~~~~~~g~~~~vDa~Q~-~g~~--pidv~~~--~~D~~~~S~hK-~~GP~G~G~Ly~r~~~ 214 (379)
T TIGR03402 145 ANNETGTIFP----IEEIGEIAKERGALFHTDAVQA-VGKI--PIDLKEM--NIDMLSLSGHK-LHGPKGVGALYIRKGT 214 (379)
T ss_pred CCCCCCHHHH----HHHHHHHHHHCCCEEEEECCCC-CCCC--CCCHHHH--CCCCEECCHHH-CCCCCCEEEEEECCCC
T ss_conf 5788870178----9999999976398899453112-4664--6403441--57721202111-3688725999982676
Q ss_pred CCCCCCCCCCCCC-----CC--CCCCHHHHHHHHHHHHC--CCCCCHHHHHCCHHHHHHHHHHHHCCCEEE--E--ECCC
Q ss_conf 2222233223453-----21--11100123345543201--222101121000026889999886797075--5--0464
Q gi|254780432|r 263 AACMNQGSHGSTY-----GG--NVLAMVLGEKVLNIIQS--DGFLENVINIAKILFEGLTAIKNRFPNMFL--E--VRGQ 329 (392)
Q Consensus 263 ~~~~~~~~~~~T~-----~g--npl~~aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~~v~--~--vRG~ 329 (392)
T Consensus 215 --~~~P~~~Gg~~e~~~~~GT~n~~~i~gl~~a~~~~~~~~~~~~~~~~~l~~~l~~~l---l~~~~~~~i~g~~~~r~p 289 (379)
T TIGR03402 215 --RFRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGL---LARIPDARLNGDPTKRLP 289 (379)
T ss_pred --CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCCEEECCCHHHCCC
T ss_conf --668767888877776789712999999999999999759999999999999999999---850898275478666488
Q ss_pred E-EEEEEEECCCHHHHHHHHHHCCEEEEEC-----------------------CCCEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 0-0999872499899999999689899626-----------------------898899558986889999999999999
Q gi|254780432|r 330 G-LLIGLKTVFSPALLAAKFRDECLLTAPS-----------------------SDNVVRILPPLTITAEEIHEGLERIER 385 (392)
Q Consensus 330 G-l~~~ie~~~~~~~~~~~l~~~Gll~~~~-----------------------~~~~irl~Ppl~it~~eid~~i~~l~~ 385 (392)
T Consensus 290 ~~~~~~~~~-~~~~~i~~~L~~~gI~v~~G~~Ca~~~~~ps~vL~a~g~~~~~~~g~iRvS~~~ynT~edId~li~aL~~ 368 (379)
T TIGR03402 290 NTVNISFEY-IEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPP 368 (379)
T ss_pred CCEEECCCC-CCHHHHHHHHCCCCEEEECCHHCCCCCCCHHHHHHHCCCCHHHCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 730323699-8999999984518929975032159998624999975998333395699973899999999999999999
Q ss_pred HHHHH
Q ss_conf 99985
Q gi|254780432|r 386 TAIKL 390 (392)
Q Consensus 386 al~~L 390 (392)
T Consensus 369 iv~~l 373 (379)
T TIGR03402 369 IIARL 373 (379)
T ss_pred HHHHH
T ss_conf 99999