HHsearch alignment for GI: 254780432 and conserved domain: TIGR03539

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.57  E-value=2.3e-13  Score=107.88  Aligned_cols=314  Identities=15%  Similarity=0.096  Sum_probs=180.0

Q ss_pred             CCCCEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC-----CCCCCCCCCCCCCHH
Q ss_conf             799764641022674357878999999999999731450687578189999986520101-----333123565554035
Q gi|254780432|r   29 ENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNLYQSTQQEIFANHLIHSTF-----ADRVFFTNSGAESVE  103 (392)
Q Consensus        29 ~dG~~yiD~~~g~~~~~lGh~~p~i~~a~~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~-----~~~v~f~~SGseA~e  103 (392)
T Consensus        18 ~~~~~vI~L~iG---~Pd~p~p~~i~~a~~~a~~~~~Y~~~~G~~eLReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~   94 (357)
T TIGR03539        18 SHPDGIVDLSVG---TPVDPVPPLIRAALAAAADAPGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVA   94 (357)
T ss_pred             HCCCCEEECCCC---CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHH
T ss_conf             689992888799---99999899999999971247998998477999999999999971999799575998688799999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC-
Q ss_conf             6777665432001347860023435465654321234553211347999864333222100268875410123322223-
Q gi|254780432|r  104 CAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILI-  182 (392)
Q Consensus       104 ~Aiklar~~~~~~g~t~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~~~~~iAavi~-  182 (392)
T Consensus        95 ~l~~~l~------~~pGD-~Vli~~P~y~~y~~~~~~~g~~~---------------v~~d~---~~~~~~~~~k~i~l~  149 (357)
T TIGR03539        95 WLPTLLG------LGPGD-TVVIPELAYPTYEVGALLAGATP---------------VAADD---PTELDPVGPDLIWLN  149 (357)
T ss_pred             HHHHHHH------CCCCC-EEEECCCCCCCHHHHHHHCCCEE---------------EECCC---HHHCCCCCCEEEEEC
T ss_conf             9999970------79999-89978887700899999859989---------------82388---666797785499989


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCC----CCCCCCEE---ECCCCCC-CCCCCC
Q ss_conf             332222112462101232211022345721310110034444555310111----24545302---1034444-443443
Q gi|254780432|r  183 EPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEW----ANVKPDIM---TIAKGMG-GGFPIG  254 (392)
Q Consensus       183 Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f~~e~----~gi~PDi~---~~gK~l~-gG~P~s  254 (392)
T Consensus       150 ~P-~NPTG~-v~s~~~l~~l~~~a~~~~i~visDEiY~~~~~~~~~~s~l~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG  227 (357)
T TIGR03539       150 SP-GNPTGR-VLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAG  227 (357)
T ss_pred             CC-CCCCHH-CCCHHHHHHHHHHCCCCEEEEECHHHHHHHCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCCCCCCCEEE
T ss_conf             99-896232-0828899999873205558995233247653589884302864537675767999615310045561289


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCH----HHHHCCHHHHHHHHHHHHCCCEEEEECCCE
Q ss_conf             2100011122222332234532111100123345543201222101----121000026889999886797075504640
Q gi|254780432|r  255 ACLATNEVAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGFLEN----VINIAKILFEGLTAIKNRFPNMFLEVRGQG  330 (392)
Q Consensus       255 av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~----~~~~g~~l~~~L~~l~~~~~~~v~~vRG~G  330 (392)
T Consensus       228 ~~~~~~~li~~l~~~~~~~~~~~~~~~q~a~~~al~---~~~~~~~~~~~~~~rr~~l~~~L----~~-~g~-~~~~p~g  298 (357)
T TIGR03539       228 FVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALG---DDGHVAEQKARYAARRAQLKPAL----EK-AGF-RIDHSEA  298 (357)
T ss_pred             EEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHH----HH-CCC-EECCCCE
T ss_conf             996799999999999985677788999999999956---92789999999999999999999----85-797-7626880


Q ss_pred             EEEE-EEECCCHHHHHHHHHHCCEEEEEC------CCCEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             0999-872499899999999689899626------8988995589868899999999999
Q gi|254780432|r  331 LLIG-LKTVFSPALLAAKFRDECLLTAPS------SDNVVRILPPLTITAEEIHEGLERI  383 (392)
Q Consensus       331 l~~~-ie~~~~~~~~~~~l~~~Gll~~~~------~~~~irl~Ppl~it~~eid~~i~~l  383 (392)
T Consensus       299 ~~y~~~~~~~~~~~~~~~l~e~gV~v~PG~~Fg~~g~~~vRis--~~~~~e~l~eal~Rl  356 (357)
T TIGR03539       299 GLYLWATRGEDAWDTVDRLAELGILVAPGDFYGPAGSQHVRVA--LTATDERIAAAVARL  356 (357)
T ss_pred             EEEEEEECCCCHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEE--ECCCHHHHHHHHHHC
T ss_conf             6999875899999999999969989947874478999979999--729999999999857