HHsearch alignment for GI: 254780432 and conserved domain: TIGR03539
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.57 E-value=2.3e-13 Score=107.88 Aligned_cols=314 Identities=15% Similarity=0.096 Sum_probs=180.0
Q ss_pred CCCCEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC-----CCCCCCCCCCCCCHH
Q ss_conf 799764641022674357878999999999999731450687578189999986520101-----333123565554035
Q gi|254780432|r 29 ENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNLYQSTQQEIFANHLIHSTF-----ADRVFFTNSGAESVE 103 (392)
Q Consensus 29 ~dG~~yiD~~~g~~~~~lGh~~p~i~~a~~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~-----~~~v~f~~SGseA~e 103 (392)
T Consensus 18 ~~~~~vI~L~iG---~Pd~p~p~~i~~a~~~a~~~~~Y~~~~G~~eLReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~ 94 (357)
T TIGR03539 18 SHPDGIVDLSVG---TPVDPVPPLIRAALAAAADAPGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVA 94 (357)
T ss_pred HCCCCEEECCCC---CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHH
T ss_conf 689992888799---99999899999999971247998998477999999999999971999799575998688799999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC-
Q ss_conf 6777665432001347860023435465654321234553211347999864333222100268875410123322223-
Q gi|254780432|r 104 CAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILI- 182 (392)
Q Consensus 104 ~Aiklar~~~~~~g~t~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~~~~~iAavi~- 182 (392)
T Consensus 95 ~l~~~l~------~~pGD-~Vli~~P~y~~y~~~~~~~g~~~---------------v~~d~---~~~~~~~~~k~i~l~ 149 (357)
T TIGR03539 95 WLPTLLG------LGPGD-TVVIPELAYPTYEVGALLAGATP---------------VAADD---PTELDPVGPDLIWLN 149 (357)
T ss_pred HHHHHHH------CCCCC-EEEECCCCCCCHHHHHHHCCCEE---------------EECCC---HHHCCCCCCEEEEEC
T ss_conf 9999970------79999-89978887700899999859989---------------82388---666797785499989
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCC----CCCCCCEE---ECCCCCC-CCCCCC
Q ss_conf 332222112462101232211022345721310110034444555310111----24545302---1034444-443443
Q gi|254780432|r 183 EPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEW----ANVKPDIM---TIAKGMG-GGFPIG 254 (392)
Q Consensus 183 Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f~~e~----~gi~PDi~---~~gK~l~-gG~P~s 254 (392)
T Consensus 150 ~P-~NPTG~-v~s~~~l~~l~~~a~~~~i~visDEiY~~~~~~~~~~s~l~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG 227 (357)
T TIGR03539 150 SP-GNPTGR-VLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAG 227 (357)
T ss_pred CC-CCCCHH-CCCHHHHHHHHHHCCCCEEEEECHHHHHHHCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCCCCCCCEEE
T ss_conf 99-896232-0828899999873205558995233247653589884302864537675767999615310045561289
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCH----HHHHCCHHHHHHHHHHHHCCCEEEEECCCE
Q ss_conf 2100011122222332234532111100123345543201222101----121000026889999886797075504640
Q gi|254780432|r 255 ACLATNEVAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGFLEN----VINIAKILFEGLTAIKNRFPNMFLEVRGQG 330 (392)
Q Consensus 255 av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~----~~~~g~~l~~~L~~l~~~~~~~v~~vRG~G 330 (392)
T Consensus 228 ~~~~~~~li~~l~~~~~~~~~~~~~~~q~a~~~al~---~~~~~~~~~~~~~~rr~~l~~~L----~~-~g~-~~~~p~g 298 (357)
T TIGR03539 228 FVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALG---DDGHVAEQKARYAARRAQLKPAL----EK-AGF-RIDHSEA 298 (357)
T ss_pred EEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHH----HH-CCC-EECCCCE
T ss_conf 996799999999999985677788999999999956---92789999999999999999999----85-797-7626880
Q ss_pred EEEE-EEECCCHHHHHHHHHHCCEEEEEC------CCCEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 0999-872499899999999689899626------8988995589868899999999999
Q gi|254780432|r 331 LLIG-LKTVFSPALLAAKFRDECLLTAPS------SDNVVRILPPLTITAEEIHEGLERI 383 (392)
Q Consensus 331 l~~~-ie~~~~~~~~~~~l~~~Gll~~~~------~~~~irl~Ppl~it~~eid~~i~~l 383 (392)
T Consensus 299 ~~y~~~~~~~~~~~~~~~l~e~gV~v~PG~~Fg~~g~~~vRis--~~~~~e~l~eal~Rl 356 (357)
T TIGR03539 299 GLYLWATRGEDAWDTVDRLAELGILVAPGDFYGPAGSQHVRVA--LTATDERIAAAVARL 356 (357)
T ss_pred EEEEEEECCCCHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEE--ECCCHHHHHHHHHHC
T ss_conf 6999875899999999999969989947874478999979999--729999999999857