HHsearch alignment for GI: 254780432 and conserved domain: TIGR03542
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=99.43 E-value=1.2e-11 Score=96.51 Aligned_cols=332 Identities=13% Similarity=0.164 Sum_probs=167.9
Q ss_pred CCCEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC--CCCC-----CCHHHHHHHHHHHHH-CCCCCCCCCCCCCCC
Q ss_conf 99764641022674357878999999999999731450--6875-----781899999865201-013331235655540
Q gi|254780432|r 30 NGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHV--SNLY-----QSTQQEIFANHLIHS-TFADRVFFTNSGAES 101 (392)
Q Consensus 30 dG~~yiD~~~g~~~~~lGh~~p~i~~a~~~q~~~~~~~--~~~~-----~~~~~~~la~~L~~~-~~~~~v~f~~SGseA 101 (392)
T Consensus 31 ~~~dvI~L~iG--ePdf-~~P~~i~~a~~~ai~~~~~~~~~~gY~~~~G~~~LReaia~~~~~~~~~~d~I~vt~Ga~~~ 107 (402)
T TIGR03542 31 PSASVIRLGIG--DTTQ-PLPASVIEAFHEAVDELASEETYRGYGPEQGLPALREAIAENDYRGRISPEEIFISDGAKCD 107 (402)
T ss_pred CCCCEEECCCC--CCCC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHEEECCCCHHH
T ss_conf 89985589899--9899-98999999999999712246786777974064999999999975689988996777782999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC--CCCCCC
Q ss_conf 356777665432001347860023435465654321234553211347999864333222100268875410--123322
Q gi|254780432|r 102 VECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQI--SNDTAA 179 (392)
Q Consensus 102 ~e~Aiklar~~~~~~g~t~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~~--~~~iAa 179 (392)
T Consensus 108 l~~-l-~a~-l-----~pG-D~Vii~~P~y~~Y~~~~~-~~g~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~ktk~ 176 (402)
T TIGR03542 108 IGR-L-QSI-F-----GSD-NTVAVQDPVYPAYVDTAV-MTGRAGFADDT-GQYRGIVYLPCTKENGFIPELPEERKIDI 176 (402)
T ss_pred HHH-H-HHH-H-----CCC-CEEEEECCCCCCHHHHHH-HCCCCCCCCCC-CCCCCEEECCCCHHHCCCCCCCCCCCCEE
T ss_conf 999-9-998-3-----999-989983888815799999-85995301356-65567256767624385722234557359
Q ss_pred CCC-CCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC-------EEECCCCCC-CC
Q ss_conf 223-332222112462101232211022345721310110034444555310111245453-------021034444-44
Q gi|254780432|r 180 ILI-EPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPD-------IMTIAKGMG-GG 250 (392)
Q Consensus 180 vi~-Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f~~e~~gi~PD-------i~~~gK~l~-gG 250 (392)
T Consensus 177 iiln~P-~NPTG~-v~s~eel~~i~~la~~~~i~iIsDEiY~~~~~~~~~~~s-~~~-~~~~~~~~I~i~S~SK~~~m~G 252 (402)
T TIGR03542 177 IYLCSP-NNPTGT-VLTKEQLKELVDYANAHGSLILFDAAYSAFISDPSIPHS-IYE-IEGAKECAIEINSFSKSLGFTG 252 (402)
T ss_pred EEECCC-CCCCCC-CCCHHHHHHHHHHHHHCCEEEEECCCHHHHHCCCCCCCC-CEE-CCCCCCEEEECCCCCCCCCCCC
T ss_conf 998999-798875-689999999999987507079602228876168987620-111-3665213673167624027834
Q ss_pred CCCCCCCCCCCCCCCC-----C--CCCCCCCCCCCC-CCHHHHHHHHHHHH---CCCCCCHHHHHCCHHHHHHHHHHHHC
Q ss_conf 3443210001112222-----2--332234532111-10012334554320---12221011210000268899998867
Q gi|254780432|r 251 FPIGACLATNEVAACM-----N--QGSHGSTYGGNV-LAMVLGEKVLNIIQ---SDGFLENVINIAKILFEGLTAIKNRF 319 (392)
Q Consensus 251 ~P~sav~~~~~i~~~~-----~--~~~~~~T~~gnp-l~~aaa~a~L~~l~---~~~l~~~~~~~g~~l~~~L~~l~~~~ 319 (392)
T Consensus 253 ~RiG~~i~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~l~~----- 327 (402)
T TIGR03542 253 VRLGWTVVPKELTYADGHSVIQDWERRLCTTFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILREALEA----- 327 (402)
T ss_pred CCHHHEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_conf 054021125877542279999999999876257755999999999973788599999999999999999998875-----
Q ss_pred CCEEEEECCCEEEE-EEEECC--CHHHHHHHHH-HCCEEEEEC------CCCEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 97075504640099-987249--9899999999-689899626------89889955898688999999999999999
Q gi|254780432|r 320 PNMFLEVRGQGLLI-GLKTVF--SPALLAAKFR-DECLLTAPS------SDNVVRILPPLTITAEEIHEGLERIERTA 387 (392)
Q Consensus 320 ~~~v~~vRG~Gl~~-~ie~~~--~~~~~~~~l~-~~Gll~~~~------~~~~irl~Ppl~it~~eid~~i~~l~~al 387 (392)
T Consensus 328 ~g~-~~~~~~ga~yl~~~~~~~~~~~~~~~~ll~e~~V~vvPG~~FG~~g~g~vRls--~a~~~e~l~ea~~Rl~~~L 402 (402)
T TIGR03542 328 AGF-KVYGGENAPYLWVKTPEGISSWDFFDFLLYQYHIVGTPGSGFGSSGEGFVRFS--AFGKRENIVAACERIKHAL 402 (402)
T ss_pred CCC-EEECCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEE--EECCHHHHHHHHHHHHHHC
T ss_conf 695-76079973489787899989899999999859999976447689998969999--7299999999999999759