HHsearch alignment for GI: 254780432 and conserved domain: cd00613
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=98.68 E-value=8.5e-07 Score=64.88 Aligned_cols=316 Identities=19% Similarity=0.226 Sum_probs=174.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCCC-CCCCCHH-------HHHHHHHHHHHCCCC--CCCCCCCCCCCHHHHHHH
Q ss_conf 226743578789999999999997314506-8757818-------999998652010133--312356555403567776
Q gi|254780432|r 39 SGIAVNSLGHSHPELVAILKSQSEKLWHVS-NLYQSTQ-------QEIFANHLIHSTFAD--RVFFTNSGAESVECAIKT 108 (392)
Q Consensus 39 ~g~~~~~lGh~~p~i~~a~~~q~~~~~~~~-~~~~~~~-------~~~la~~L~~~~~~~--~v~f~~SGseA~e~Aikl 108 (392)
T Consensus 23 ~flG~g~y~h~~p~~v~~~~~r~e--f~t~ytpyq~E~sQG~Lq~~~e~Qs~i~eLtGmdv~naSl~d~a~A~aEa~~ma 100 (398)
T cd00613 23 SFLGSGTYKHNPPAVIKRNILENE--FYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLA 100 (398)
T ss_pred CCCCCCCCCCCCHHHHHHHHCHHH--HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 567460256233889898738676--714699989688699999999999999998688835632687677999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 65432001347860023435465654321234553211347999864333222100268875410123322223332222
Q gi|254780432|r 109 ARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILIEPIQGE 188 (392)
Q Consensus 109 ar~~~~~~g~t~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~~~~~iAavi~Epv~g~ 188 (392)
T Consensus 101 ~~~~-----~~~r~~vl-v~~~~hp~~~~v~~t~~~~~---g~~i~~v~~~~~G~~d~~~l~~~~~~~~a~v~v~~Pn~~ 171 (398)
T cd00613 101 AIRA-----YHKRNKVL-VPDSAHPTNPAVARTRGEPL---GIEVVEVPSDEGGTVDLEALKEEVSEEVAALMVQYPNTL 171 (398)
T ss_pred HHHH-----HCCCCEEE-ECCCCCCCHHHHHHHHHHCC---CCEEEEECCCCCCCCCHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 9986-----26899899-77877803699999986125---865899426667774658888750788599995279996
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCEEEECCCCC---CCCCCCCCCCCCCCCCCCCEEE-----CCCCCCCCCC-CCCCCCC
Q ss_conf 11246210123221102234572131011003---4444555310111245453021-----0344444434-4321000
Q gi|254780432|r 189 GGVRKVPEEFLQQLRKICDDIDALLIFDEVQT---GYGRTGKLFAYEWANVKPDIMT-----IAKGMGGGFP-IGACLAT 259 (392)
Q Consensus 189 ~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t---G~GRtG~~f~~e~~gi~PDi~~-----~gK~l~gG~P-~sav~~~ 259 (392)
T Consensus 172 -G~~e---~~~~~i~~~~h~~gal~~~~~~~~~l~~l~~Pg~~------G--aDI~~g~~q~~g~P~~~GGP~~G~~a~~ 239 (398)
T cd00613 172 -GVFE---DLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEY------G--ADIVVGNLQKTGVPHGGGGPGAGFFAVK 239 (398)
T ss_pred -EEEE---CCHHHHHHHHHHCCCEEEEEECCHHHHCCCCCCCC------C--CCEEEECCCCCCCCCCCCCCCCCHHHHH
T ss_conf -2785---19999999998759869997440353155571004------7--8779852511466566688744326679
Q ss_pred CCCCCCCCC----------C-------------------CCCCCCCCCCCCHHHHHHHHHHHHCCCCC---CHHHHHCCH
Q ss_conf 111222223----------3-------------------22345321111001233455432012221---011210000
Q gi|254780432|r 260 NEVAACMNQ----------G-------------------SHGSTYGGNVLAMVLGEKVLNIIQSDGFL---ENVINIAKI 307 (392)
Q Consensus 260 ~~i~~~~~~----------~-------------------~~~~T~~gnpl~~aaa~a~L~~l~~~~l~---~~~~~~g~~ 307 (392)
T Consensus 240 ~~l~r~lPgrivg~t~D~~G~~~~~ltlqtreqhIrRekatsnict~qal~al~a~~Y~~~lG~~GL~~va~~~~~~A~Y 319 (398)
T cd00613 240 KELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANY 319 (398)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 98773589985650478888742154413543336777528816432789999999999984886388999999999999
Q ss_pred HHHHHHHHHHHCCCEEEEECCCEEEEE--EEECCCHHHHHHHHHHCCEE----E---EECCCCEEEECCCCCCCHHHHHH
Q ss_conf 268899998867970755046400999--87249989999999968989----9---62689889955898688999999
Q gi|254780432|r 308 LFEGLTAIKNRFPNMFLEVRGQGLLIG--LKTVFSPALLAAKFRDECLL----T---APSSDNVVRILPPLTITAEEIHE 378 (392)
Q Consensus 308 l~~~L~~l~~~~~~~v~~vRG~Gl~~~--ie~~~~~~~~~~~l~~~Gll----~---~~~~~~~irl~Ppl~it~~eid~ 378 (392)
T Consensus 320 l~~~L~~~~~-----~~-~~~~~~f~EFvi~~~~~~~~~~~~l~k~~i~~G~~~~~~y~~~~~~lli~~TE~~skediD~ 393 (398)
T cd00613 320 LAKRLKEVGG-----VL-PFNGPFFHEFVLRLPPLYGIRAEDLAKALIDGGFHAPTMYLPVDGTLMIEPTETETKEELDA 393 (398)
T ss_pred HHHHHHHCCC-----CC-CCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHH
T ss_conf 9999986389-----82-68998666999976875476899999736215828664688889979998058999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780432|r 379 GLERI 383 (392)
Q Consensus 379 ~i~~l 383 (392)
T Consensus 394 l~~aL 398 (398)
T cd00613 394 LLEAL 398 (398)
T ss_pred HHHHC
T ss_conf 99749